Citrus Sinensis ID: 012996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELLDGDQVDGSKRNVV
Secondary Structure (PSIPRED)
cEEEEEEEccccccEEEEEccccEEEEEEEccccccEEEEEccccEEEccccccccccccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEccccccccEEEEEEcccccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccccEEEEEEccccEEEEccccccEEEEccccccEEEccccccccEEEEEEEcccccEEEccccccEEEEcccccccccccccccccccccccccccEEccccccccEEEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEcEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccccccEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEcccccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEcccccEEEEccccccEEEEccccEEEEEEcccccccccccEEEEcccccEEEEEccccccEEEEEcccccHHHHccccHHHHHHHHHccccEEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MELLIasssvadtgigcwdlesgaeqlrykscaspphglacvgqrflassqlreqpsassgsilywswskpqvevkslpaepikpiaanshgtyiagggqsgdIYMWEVASGRLLKKWHAHYRAVTCLVfsedgsflisgseDGCVRIWSLLTVFEECESQRASHLYLhsftghtlrITDIVIGYGGVSATIVSASEDRTCKVWSLLKgrllrnivfpsvidaialdpaehvfyagsrdgSIYIAALnaespstssygmHIIGSLSDHSKAVTCLAystgdllisgsedgmvrvwdpiTHNIVRMFRLakgpvnnilvvrrplylnlgsfsnphtssrrhgsqlpppldkyvtsadedvdkkgvirlpslynaprdasyiSHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNelldgdqvdgskrnvv
Flexible Loop (DISEMBL)
MELLIASssvadtgiGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATivsasedrTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDllisgsedgMVRVWDPITHNIVRMFrlakgpvnnILVVRRPLYLNLGSfsnphtssrrhgsqlpppLDKYVTSadedvdkkgvirlpslynaprdasyISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNelldgdqvdgskrnvv
Low Complexity Region (SEG)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELLDGDQVDGSKRNVV
Disordered region (IsUnstruct)
*********VADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFL**************SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE*****SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS**********************************VIRLPSLYNAP**ASYISH****************************ECNRTLQMVQQWKKMYENLHEFCVNELLD************
Disordered Region (DISOPRED)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRT**********************RLKRECNRTLQMVQQWKKMYENLHEFCVNEL**************
Disordered Region (DISEMBL)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS**********GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN************PPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKEL**************RLKRECNRTLQMVQQWKKMYENLHEFCVNELLDGDQV********
Disordered Region (DISPRO)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELLDGDQVD*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMExxxxxxxxxxxxxxxxxxxxxYENLHEFCVNELLDGDQVDGSKRNVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
Q3SZD4	432	WD repeat-containing prot	yes	no	0.871	0.909	0.315	2e-42
Q499N3	431	WD repeat-containing prot	yes	no	0.691	0.723	0.338	7e-40
Q9BV38	432	WD repeat-containing prot	yes	no	0.875	0.914	0.307	8e-40
Q4VBE8	431	WD repeat-containing prot	yes	no	0.689	0.721	0.325	6e-38
Q68EI0	431	WD repeat-containing prot	yes	no	0.851	0.890	0.273	4e-32
Q10272	446	Pre-rRNA-processing prote	yes	no	0.678	0.686	0.270	4e-27
Q6BMP5	515	Pre-rRNA-processing prote	yes	no	0.385	0.337	0.353	2e-24
A3LNM0	525	Pre-rRNA-processing prote	yes	no	0.567	0.487	0.301	6e-24
A5DNK9	451	Pre-rRNA-processing prote	N/A	no	0.616	0.616	0.275	1e-23
Q6C953	426	Pre-rRNA-processing prote	yes	no	0.871	0.922	0.270	2e-23

>sp|Q3SZD4|WDR18_BOVIN WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 212/438 (48%), Gaps = 45/438 (10%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+ + + S A       W+L SGA  L Y+   + P GLA +   +L ++QL       
Sbjct: 5   MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------G 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  +  + +G Y+  G  S +IY+WEV++G LL   
Sbjct: 59  KNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ D S  ISG +D  V  WSL +V +   S+  +    H ++ HTL I
Sbjct: 118 SRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTLPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + +AS D+T K+W +  G LL +++F   I A+ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGS 235

Query: 239 DGSIYIAAL-------NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290
           DGSI+   L                +G    G    H   VTCL+ ST G +L+SGS D 
Sbjct: 236 DGSIFQVDLCTWPGQREKSFQPEQEHGKVFRG----HRNQVTCLSVSTDGSVLLSGSHDE 291

Query: 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDK 350
            VR+WD  +   +R   L KGPV N  ++  P+ +    F        R G  L P  +K
Sbjct: 292 TVRLWDVQSQQCLRTVTL-KGPVTNACIMLAPVSMLSSDF--------RPGLPL-PHFNK 341

Query: 351 YVTSAD--EDVDKKGVIRLPSLYNAPRDASYISH---------RTIENHIKELQQQGSSA 399
           ++  A+  ++  + G++    L+    + SY+            T+E ++   Q Q    
Sbjct: 342 HLLGAEHGDEPHRGGLMLRLGLHQQGSEPSYLERVEQLQAVMSSTLEKNVLGGQDQLRIR 401

Query: 400 ATEMEVE-RLKRECNRTL 416
            TE+E E R  R+ NR L
Sbjct: 402 VTELEDEVRNLRKINRDL 419

May play a role during development.
Bos taurus (taxid: 9913)

>sp|Q499N3|WDR18_RAT WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1

 Score =  165 bits (417), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 169/328 (51%), Gaps = 16/328 (4%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+++ + S A       W+L SGA  L Y+   + P GLA +   +L ++Q        
Sbjct: 5   MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------QG 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV++G LL   
Sbjct: 59  KNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ DGS  +S  +D  V  WSL +V +   S+  +    H ++ HTL I
Sbjct: 118 SRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTLPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGS 235

Query: 239 DGSIYIAALNAE-SPSTSSYG--MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294
           DGSI+   L +   P   S+    +       H   VTCL+ ST G +L+SGS D  VR+
Sbjct: 236 DGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVRL 295

Query: 295 WDPITHNIVRMFRLAKGPVNNILVVRRP 322
           WD  +   VR   L KGPV N  +   P
Sbjct: 296 WDVKSKQCVRTVPL-KGPVTNAAITLAP 322

May play a role during development.

Rattus norvegicus (taxid: 10116)

>sp|Q9BV38|WDR18_HUMAN WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2

 Score =  165 bits (417), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 134/436 (30%), Positives = 206/436 (47%), Gaps = 41/436 (9%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+ + + S A       W+L SGA  L Y+   + P GLA +   +L ++QL       
Sbjct: 5   MEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------G 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  + A+ +G Y+  G  +  I++WEV++G LL   
Sbjct: 59  KNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ D S  ISG +D  V +WSL +V +   S+  +    H ++ H L I
Sbjct: 118 SRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHALPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + ++S D+T K+W +  G LL +++F   I A+ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGS 235

Query: 239 DGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
           +GSI+   L    P       H           H   VTCL+ ST G +L+SGS D  VR
Sbjct: 236 EGSIFQVDLFTW-PGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVR 294

Query: 294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP-PPLDKYV 352
           +WD  +   +R   L KGPV N  ++  P+ +    F             LP P  +K++
Sbjct: 295 LWDVQSKQCIRTVAL-KGPVTNAAILLAPVSMLSSDFR----------PSLPLPHFNKHL 343

Query: 353 TSADE-DVDKKGVIRL----------PSLYNAPRDASYISHRTIENHIKELQQQGSSAAT 401
             A+  D  + G + L          PS  +       +   T+E  +   Q Q     T
Sbjct: 344 LGAEHGDEPRHGGLTLRLGLHQQGSEPSYLDRTEQLQAVLCSTMEKSVLGGQDQLRVRVT 403

Query: 402 EMEVE-RLKRECNRTL 416
           E+E E R  R+ NR L
Sbjct: 404 ELEDEVRNLRKINRDL 419

May play a role during development.

Homo sapiens (taxid: 9606)

>sp|Q4VBE8|WDR18_MOUSE WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1

 Score =  159 bits (401), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 18/329 (5%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+++ + + A       W+L SGA  L Y+   + P GLA +   +L ++Q        
Sbjct: 5   MEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------QG 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV +G LL   
Sbjct: 59  KNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ DGS  +S  +D     WSL +V +   S+  +    H ++ HTL I
Sbjct: 118 SRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPR--HVWSQHTLPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGS 235

Query: 239 DGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
           DGSI+   L    P    +      +       H   VTCL+ ST G +L+SGS D  VR
Sbjct: 236 DGSIFQVDL-CSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHDESVR 294

Query: 294 VWDPITHNIVRMFRLAKGPVNNILVVRRP 322
           +WD  +   +R   L KGPV N  ++  P
Sbjct: 295 LWDVKSKQCLRTVTL-KGPVTNAAIILAP 322

May play a role during development.

Mus musculus (taxid: 10090)

>sp|Q68EI0|WDR18_DANRE WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 199/431 (46%), Gaps = 47/431 (10%)

Query: 18  WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVK 76
           +D  +G+E L Y+   +    L  +   ++  +QL +        I  W    K Q++ K
Sbjct: 23  YDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQLGKN------YINVWEIQRKDQLQQK 76

Query: 77  SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF 136
            +    +  + A+  G Y+  G     IY+WEV++G LL     H++ ++C+ F++D S 
Sbjct: 77  IVCPGIVTCLCASPDGLYVLAGIAEA-IYLWEVSTGNLLAILSRHFQDLSCIKFTDDSSH 135

Query: 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196
            +SG +D    IW+L +V +  +S R      H  + H+L ITDI  G  G  A + +AS
Sbjct: 136 FVSGGKDNLAFIWNLSSVVQ-LDSSRTPEPR-HILSRHSLPITDIHCGLMGPQARVATAS 193

Query: 197 EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS--- 253
            D+T KVW +  G +L +++F   I ++  DP E+  + G  DG+I+  +L + S S   
Sbjct: 194 LDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDGNIFQVSLCSTSLSRDK 253

Query: 254 ---TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309
              + S G  +      H   VTCL+ S  G +L+SGS D  VR+WD  +   +      
Sbjct: 254 TFQSDSEGNQV---FKGHRNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTIN-H 309

Query: 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGV----I 365
           +GPV N  ++  P  + L S S+P     R    L P          E  D  G     +
Sbjct: 310 RGPVTNAAIIPAPANMFL-SDSHPAVPLPRFSRHLNP---------SEQGDGTGTGGMSL 359

Query: 366 RLPSLYNAPRDASYISHR----TIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQ 421
           RL +    P + +Y+       ++   + +    G    T++ V  L+ E       V+ 
Sbjct: 360 RLGANTQEP-EGTYLEKAEELYSLMCAVTDKSVFGDGENTKVRVSELEEE-------VRT 411

Query: 422 WKKMYENLHEF 432
            KK+ ++L+EF
Sbjct: 412 LKKINKDLYEF 422

Involved in left-right determination through controlling the correct clustering and migration of dorsal forerunner cells (DFCs) and Kupffer's vesicle formation.

Danio rerio (taxid: 7955)

>sp|Q10272|IPI3_SCHPO Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=crb3 PE=1 SV=1

 Score =  122 bits (307), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 42/348 (12%)

Query: 1   MELLIASSSVAD---TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS 57
           MELL++     +   + + C +L +G     ++  +SP     C     L S+Q   +P 
Sbjct: 1   MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQ 58

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
            +       ++ K  ++   +  E +  + ++  G+++A G + G++Y+W + SG L+  
Sbjct: 59  LN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYF 113

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGH 174
           + AHY+ +T L FS DG  L + S DG V  W + T+ ++    E+  +S   +  F+GH
Sbjct: 114 FRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGH 173

Query: 175 TLRITDIVIGYGG-VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233
              I  + IG G  VS  + +ASED T ++W +  G LL  I  PS    + +DP+E V 
Sbjct: 174 KRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVV 233

Query: 234 YAGSRDGSIYIAALNAESPSTSSY-------------------GMHIIGSLSD--HSKAV 272
           Y G+  G I+I      S  +++                    GM  +   +D   S  +
Sbjct: 234 YVGNEKGIIWIPLYTGSSTFSNNVKEKKRVTSVDNTTIPNAIGGMGRVVDYNDSRESSII 293

Query: 273 TCLAYST-------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV 313
           +C +  T         LLISG +DG V VWD ++  ++R       PV
Sbjct: 294 SCQSPITTLTVSFDASLLISGDKDGNVLVWDSVSRQVLRRLVQYYSPV 341

Involved in the processing of ITS2 sequences from 35S pre-rRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6BMP5|IPI3_DEBHA Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IPI3 PE=3 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 101/184 (54%), Gaps = 10/184 (5%)

Query: 95  IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW---SL 151
           +AGG ++G IY+WE+ASG LL    AHY+A+T + FS+ G+FL+SGS D    +W    L
Sbjct: 121 LAGGSKTGKIYVWELASGNLLCVKEAHYQAITAIKFSQCGTFLVSGSSDARCMVWRTSDL 180

Query: 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT--IVSASEDRTCKVWSLLKG 209
           ++V+ + E    +     SFT H+L ITD+ I   G+ +   + + S D T +++ ++  
Sbjct: 181 ISVYNKDEESSINIKPFASFTDHSLPITDLAISEAGIISDLRLYTVSRDSTLRIYDIMTK 240

Query: 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269
            LL   V PS I+ +  DPA    Y G  +G I    L   +P+TS     ++ S+    
Sbjct: 241 SLLTTFVLPSGIECVTKDPANRACYVGLSNGLIRTVPLYQINPNTS-----VLESIGGRG 295

Query: 270 KAVT 273
           K VT
Sbjct: 296 KIVT 299

Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A3LNM0|IPI3_PICST Pre-rRNA-processing protein IPI3 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=IPI3 PE=3 SV=2

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 144/315 (45%), Gaps = 59/315 (18%)

Query: 95  IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS---L 151
           +AGG +SG IY+WE++SG LL    AHY+ VT + FS+ G+FL++GS+D    +W    L
Sbjct: 122 LAGGSKSGKIYVWELSSGSLLCVKEAHYQNVTVVKFSKCGTFLVAGSDDARCTVWKTLDL 181

Query: 152 LTVF--EECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLL 207
           + VF  +  ES R    YL + T +TL +TD+V+   GV     + + S D T +++ ++
Sbjct: 182 IAVFDGDNDESSRNFKPYL-AITDNTLAVTDLVLNEPGVINDLKLYTVSRDNTLRIYDII 240

Query: 208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS---SYG--MHII 262
             +LL   +    I+++  DPA    Y G  +G I    L   +P+TS   S G    II
Sbjct: 241 TKQLLTTFILSEAIESVVADPAGRAVYVGLSNGLIRTIPLYNINPNTSVLESIGGNQKII 300

Query: 263 GSLSD---------HSKAVTCLAYST-------------------------------GDL 282
              SD         H + ++  A  T                               G  
Sbjct: 301 TVESDPNLKFTFLHHQQRISADANKTSILHKNLNNKKNDTENANKPIHVTKLAISLDGTN 360

Query: 283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHG 341
           LISG   G V V D +T  +V+ F     P++ I V   P   LN+ S S      ++H 
Sbjct: 361 LISGDSLGRVYVSDIVTRQVVKTFTPCNSPISQIQVSSAPFEALNVSSNSK---VDKKH- 416

Query: 342 SQLPPPLDKYVTSAD 356
            +L P L + +T  D
Sbjct: 417 -RLIPQLKRVLTGRD 430

Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

>sp|A5DNK9|IPI3_PICGU Pre-rRNA-processing protein IPI3 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IPI3 PE=3 SV=2

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 145/338 (42%), Gaps = 60/338 (17%)

Query: 41  CVGQR-----FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-- 93
           C GQ+     FLA S+           I  +SW K   + +    EP+  +A   H +  
Sbjct: 42  CSGQKAGDRLFLAGSK---------PLITVYSWGKESPDQRIPVPEPLTCMALCKHPSNE 92

Query: 94  -------------YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140
                         +AGG  SG +Y+WE++SG L+    AHY+A+  L FSE G++L+SG
Sbjct: 93  KINHKVPTFQLPWLLAGGSASGKLYIWELSSGNLVCVKEAHYQAINVLKFSECGTYLVSG 152

Query: 141 SEDGCVRIWSL--LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASE 197
             D    +W    L   ++ E+Q+ +     +F  HTL +TDI +  G  S   + S+S+
Sbjct: 153 GADARCSVWKTLDLVTIDDPETQKTASAL--TFMDHTLAVTDIWLTTGIRSDIRLYSSSK 210

Query: 198 DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257
           D T + + +  G+L+   V P  ++ +A+DPA    YAG  DG+I        +P TS  
Sbjct: 211 DGTVRNYDITSGKLITTFVLPLSVECLAVDPAGRACYAGLSDGTIRTVLQYKVNPHTS-- 268

Query: 258 GMHIIGSLSDHSKAVTCLAYST---------------------GDLLISGSEDGMVRVWD 296
              ++ ++  + K VT                           G  +IS  E G V V D
Sbjct: 269 ---VLEAVGGNGKVVTLATDPELRESFVHHQPHRVTSVKVSLDGTTIISSDESGRVMVAD 325

Query: 297 PITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH 334
            +T  +V+    A  PV  + V         G F   H
Sbjct: 326 AVTTQVVKALSPATSPVIYLAVDTVVAGSQFGRFEKKH 363

Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|Q6C953|IPI3_YARLI Pre-rRNA-processing protein IPI3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IPI3 PE=3 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 212/454 (46%), Gaps = 61/454 (13%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACV-----GQRFLASSQLREQ 55
           ME LI  ++  + G    DL SG     +K+  + P+    +     G   L S+Q +  
Sbjct: 1   MEELIIYTT--NKGACAVDLHSGNNITHFKNDETAPNLSVFLTNTPSGNPLLFSAQTK-- 56

Query: 56  PSASSGSILY-WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114
                G++++ ++W++  V+ + +  E +  +AA++ GT++AGG  SG +++WE+ASG+L
Sbjct: 57  -----GAMMHVYNWNRESVDQQIVLPEKLSCLAASTCGTWLAGGSASGRLFVWELASGKL 111

Query: 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF---EECESQRASHLYLHSF 171
           +     HY+AVT L F+ DG  L S S+D  V  WSL+T+    ++C+          ++
Sbjct: 112 VFSREVHYQAVTKLAFT-DG-LLFSTSKDARVLGWSLVTMASDPKDCQP-------CITW 162

Query: 172 TGHTLRITDIVIGYGGVSAT-IVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDP 228
           T H L + D+V+G G    T + + S D+T ++W +    LL  I  P+      +A+D 
Sbjct: 163 TEHNLGVVDLVVGGGPTRDTRVFTVSTDKTVRIWDVSSTALLTTITLPAAETPTTLAVDQ 222

Query: 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-----------SLSDHSKAVTCLAY 277
            E   + G   G+I   +L   SPST   G+  +G           +LS H  AVT LA 
Sbjct: 223 LERTLFVGCASGNILSVSLYDVSPST---GLVSVGGASGVVESGNVALSHHKSAVTSLAL 279

Query: 278 S-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-NPHT 335
           S    LL+S  + G + VWD  +  + R  +  +  +N +  V+      L +   NP T
Sbjct: 280 SFDATLLVSADDKGFICVWDLPSRQVSRSIKQPRAEMNPVTYVQTITTHGLPTEKYNPKT 339

Query: 336 SSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQ 395
           + +       P L +      ED D    I+       PR  +     T++  ++  Q  
Sbjct: 340 AVKL------PMLKRVQDDKPEDHDILVKIQ-------PRQKTVAHEDTLQQMVESAQFG 386

Query: 396 GSSAATEMEVERLKRECNRTLQMVQQWKKMYENL 429
           G S A   +V +L+ E ++        K+ ++ L
Sbjct: 387 GDSLAG--KVVQLENELSQAKSSFASLKESHDTL 418

Involved inthe processing of ITS2 sequences from 35S pre-rRNA.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
224137550	446	predicted protein [Populus trichocarpa]	0.973	0.984	0.688	1e-177
255538272	452	WD-repeat protein, putative [Ricinus com	0.993	0.991	0.689	1e-176
225458641	448	PREDICTED: WD repeat-containing protein	0.968	0.975	0.713	1e-176
356526563	449	PREDICTED: WD repeat-containing protein	0.973	0.977	0.668	1e-168
356567138	449	PREDICTED: WD repeat-containing protein	0.973	0.977	0.659	1e-166
449447253	451	PREDICTED: WD repeat-containing protein	0.975	0.975	0.641	1e-165
357502523	441	WD repeat-containing protein [Medicago t	0.973	0.995	0.595	1e-154
297816142	438	hypothetical protein ARALYDRAFT_485276 [	0.957	0.986	0.572	1e-143
15229101	438	root initiation defective 3 protein [Ara	0.957	0.986	0.545	1e-137
21592898	438	unknown [Arabidopsis thaliana]	0.957	0.986	0.545	1e-137

>gi|224137550|ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|222835469|gb|EEE73904.1| predicted protein [Populus trichocarpa]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 305/443 (68%), Positives = 359/443 (81%), Gaps = 4/443 (0%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
           E++IASSS+ D GIGCWDL++G E LRYKSCASPPHGL  VG+RFLASSQL++ P ASSG
Sbjct: 3   EIVIASSSI-DGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQD-PKASSG 60

Query: 62  SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
           +ILYWSWS+PQVEVK  P EPIKP+ ANS GTY+ GGG SG+IY WEVA+GRLLKKW AH
Sbjct: 61  AILYWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVGGGLSGNIYFWEVATGRLLKKWRAH 120

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181
           YRAVTCLVF+ED S L+SGSEDG VR+W LL +F++ + ++AS LY HSF  HTLR+TDI
Sbjct: 121 YRAVTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQASQLYEHSFQEHTLRVTDI 180

Query: 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241
           V GYGG +A I+SASEDRTCKVWSL KG LLRNIVFPS+ID+I LDP EHVFYAG RDG 
Sbjct: 181 VTGYGGGNAIIISASEDRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGGRDGK 240

Query: 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300
           I+IAAL A+S S  S+ +HIIGSLS HSK VTCLAYST G++L+SGSEDGM+RVWDP TH
Sbjct: 241 IHIAALGADSSSIKSHWLHIIGSLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVWDPKTH 300

Query: 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVD 360
           NIVR+F+ AKGPVNNI V+ RP YLN  S SN   SSRRHG  LPPPL KY+ + DE V 
Sbjct: 301 NIVRVFKHAKGPVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMDEKVI 360

Query: 361 KKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQ 420
              V  L +  N P DAS IS + I   IKELQQQGS+AA EMEVE+LK +C +++QM+Q
Sbjct: 361 SAAV-NLQATCNNPLDASCISSQVINCQIKELQQQGSAAAAEMEVEKLKLDCTQSMQMLQ 419

Query: 421 QWKKMYENLHEFCVNELLDGDQV 443
           +WKK Y+NLHEFCV+ELL+GD V
Sbjct: 420 RWKKTYDNLHEFCVDELLEGDNV 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538272|ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communis] gi|223550902|gb|EEF52388.1| WD-repeat protein, putative [Ricinus communis]

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/451 (68%), Positives = 372/451 (82%), Gaps = 3/451 (0%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
           ELL+ASSS+ D GIGCWDL++GAE LRYKSCASPPHGL CVG RFLA+SQLR+   ASSG
Sbjct: 4   ELLLASSSI-DGGIGCWDLQTGAEHLRYKSCASPPHGLTCVGSRFLAASQLRDS-HASSG 61

Query: 62  SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
           SI+YWSWSKPQVEVK  P EPIKP+ AN  GTYI GGG SG IY+WEVA+GRLLKKW AH
Sbjct: 62  SIVYWSWSKPQVEVKCFPEEPIKPLVANKEGTYIIGGGISGHIYIWEVATGRLLKKWRAH 121

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181
           YRAVTCLVF+ED SFL+SGSEDG VR+WSLL +F+E ++++AS LY HSF+ HTLR+TD+
Sbjct: 122 YRAVTCLVFTEDDSFLVSGSEDGSVRVWSLLMMFDEYQTEQASQLYEHSFSEHTLRVTDV 181

Query: 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241
           V GYGG +  IVSAS+DRTCKVWSL KG LLRNIVFPS+ID++ALDP E+VFYAG RDG+
Sbjct: 182 VTGYGGGNTIIVSASDDRTCKVWSLSKGNLLRNIVFPSIIDSLALDPGENVFYAGCRDGN 241

Query: 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITH 300
           IYIAALNA+S ST S+ +HIIGSLS HSK VTCLAYS  G+LL++GSEDG++RVWDP +H
Sbjct: 242 IYIAALNADSSSTKSHWLHIIGSLSSHSKPVTCLAYSANGNLLLAGSEDGIIRVWDPRSH 301

Query: 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVD 360
           NIVR F+ AKGPVNNI +V+RP YLN  + S    SSRRHGS LPPPLDKYV S D+ + 
Sbjct: 302 NIVRTFKHAKGPVNNIQIVKRPHYLNPRASSIVQASSRRHGSSLPPPLDKYVNSTDKSIG 361

Query: 361 KKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQ 420
              V+RL    N P D SY+S++ I N IKELQQQGS+AA EMEVERLK +C + +QM+Q
Sbjct: 362 STAVVRLQDTCNNPLDVSYVSYQVIANQIKELQQQGSAAAAEMEVERLKLDCAQYMQMLQ 421

Query: 421 QWKKMYENLHEFCVNELLDGDQVDGSKRNVV 451
           +WKKMY+NLH+ CVNELL+GD V  + +N++
Sbjct: 422 KWKKMYDNLHQLCVNELLEGDNVIKNNQNII 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458641|ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [Vitis vinifera] gi|302142303|emb|CBI19506.3| unnamed protein product [Vitis vinifera]

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 316/443 (71%), Positives = 361/443 (81%), Gaps = 6/443 (1%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
           E+++ASS V D GI CWDL+SGAE LR++SCASPPHGL CV  RF ASSQLR+  S+SS 
Sbjct: 5   EVVVASSPV-DAGISCWDLQSGAEHLRHRSCASPPHGLVCVADRFFASSQLRDSSSSSSS 63

Query: 62  S-ILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
             I YWSWSKPQVEVKS PAEPIKP+AAN  GTYIAGGG SGDIY WEVASGRLLKKWHA
Sbjct: 64  GSIFYWSWSKPQVEVKSFPAEPIKPLAANREGTYIAGGGLSGDIYFWEVASGRLLKKWHA 123

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYRAVTCLVFS+D S LISG+EDGCVR+WSL  +F++   + A HLY HSF+ HTLR+TD
Sbjct: 124 HYRAVTCLVFSDDESLLISGAEDGCVRVWSLFMIFDDLRREEAGHLYEHSFSEHTLRVTD 183

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IV GYGG +A IVSASEDRTCKVWSL  GRLLRN+VFPS+IDAIALDP EHVFYAGSRDG
Sbjct: 184 IVTGYGGGNAIIVSASEDRTCKVWSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDG 243

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299
            IYIAALNA   S++SYGMHIIGSLSDHSKAVTCLA++T G LL+SGSEDGMVRVWD  T
Sbjct: 244 KIYIAALNAVGSSSNSYGMHIIGSLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWDTKT 303

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
            NI R+F+ AKGPV+NILVVRRP   N  +  N  TSS++HGS L PPLDKY+ S+DE+ 
Sbjct: 304 RNIFRIFKHAKGPVSNILVVRRP---NDSNPRNSQTSSKKHGSFLSPPLDKYLNSSDENE 360

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMV 419
           D K  I   + ++   DASY S   I + IKELQQQGSSAATEME+ERLK +  +++QMV
Sbjct: 361 DAKVFIGCQTTFSKSVDASYRSCHIIIDQIKELQQQGSSAATEMEMERLKIDSQKSVQMV 420

Query: 420 QQWKKMYENLHEFCVNELLDGDQ 442
           QQWKKMYENLH+FCVNELLD D 
Sbjct: 421 QQWKKMYENLHQFCVNELLDADH 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526563|ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/443 (66%), Positives = 351/443 (79%), Gaps = 4/443 (0%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+++ASSSV D GIGCWDL +GAEQLRYKSC SP HGL  VG RF+ASSQLR+ P+A+ 
Sbjct: 1   MEVVLASSSV-DGGIGCWDLHTGAEQLRYKSCTSPSHGLISVGARFIASSQLRDDPAAT- 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           G +LYWSWSKPQVEVKS PAE IKPIAAN  GTYIAGG  SGDIY+WEV +GRLLKKW A
Sbjct: 59  GYVLYWSWSKPQVEVKSFPAEQIKPIAANHPGTYIAGGAPSGDIYLWEVETGRLLKKWRA 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H+RAV+CLVFSED S L+SGSEDG VR+WSL  +F++   Q+AS+LY +SF+ HTL +TD
Sbjct: 119 HFRAVSCLVFSEDDSLLVSGSEDGSVRVWSLFMIFDDLRCQQASNLYEYSFSEHTLTVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           +VIG GG +A IVSAS DRTCKVWSL +G LLRNIVFPS+I+ IALDPAEHVFYAGS DG
Sbjct: 179 VVIGNGGCNAIIVSASNDRTCKVWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDG 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG-DLLISGSEDGMVRVWDPIT 299
            I+IAALN ES +T++YGMHIIGS S+HS  VTCLAY T  +LLI+GSEDGMVRVW+  T
Sbjct: 239 KIFIAALNTESITTNNYGMHIIGSFSNHSNQVTCLAYGTSENLLITGSEDGMVRVWNART 298

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
            NIVRMF+ AKGPVNNILVVRR    +    SN   SSR+ GS LPPPL+KY  S D+D+
Sbjct: 299 RNIVRMFKHAKGPVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDL 358

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMV 419
           D K +I L     +  D SY+S   I N+IKELQ QGS+AA+EME+E+LK +  +++QM 
Sbjct: 359 DMKTMISLGGGRRSV-DPSYLSSHVISNYIKELQHQGSAAASEMEMEKLKHDYQKSVQMA 417

Query: 420 QQWKKMYENLHEFCVNELLDGDQ 442
            Q KKM ENLH+FCV ELLDG Q
Sbjct: 418 NQLKKMNENLHQFCVKELLDGGQ 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567138|ref|XP_003551778.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/443 (65%), Positives = 347/443 (78%), Gaps = 4/443 (0%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+++ASSSV D GIGCWDL +GAEQLRYKSC SP HGL  V  RF+ASSQLRE  SA  
Sbjct: 1   MEVVLASSSV-DGGIGCWDLHTGAEQLRYKSCTSPSHGLVSVAARFIASSQLREDQSAP- 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GS+L+WSWSKPQVEVKS PAE IKP+A N  GT+IA G  SGDIY+WEV +GRLLKKWHA
Sbjct: 59  GSVLFWSWSKPQVEVKSFPAEQIKPLATNHPGTFIAAGAPSGDIYLWEVETGRLLKKWHA 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H+RAV+CLVFSED S L+SGSEDG VR+WSL  +F++  +Q+AS LY +SF+ HTL +TD
Sbjct: 119 HFRAVSCLVFSEDDSLLVSGSEDGSVRVWSLFMIFDDLRNQQASSLYEYSFSEHTLTVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           +VIG GG +A IVSAS+DRTCKVWSL +G LLRNIVFPS+I+ IALDPAEHVFYAGS DG
Sbjct: 179 VVIGNGGCNAIIVSASKDRTCKVWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDG 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            I+IAALN ES +T++YGMHII S S+HS  VTCLAY S+ +LLISGSEDGMVRVW+  T
Sbjct: 239 KIFIAALNTESIATNNYGMHIISSFSNHSNQVTCLAYGSSENLLISGSEDGMVRVWNART 298

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
            NIVRMF+ +KGPVNNILVVRR    +    SN   SSR+ GS LPPPL+KY  S D+D 
Sbjct: 299 RNIVRMFKHSKGPVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDS 358

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMV 419
           D K +I L     +  D SYIS   I N+IKELQ QGS+AA+EME+E+LK +  +++QM 
Sbjct: 359 DMKTMISLGGGRKSV-DPSYISSHVISNYIKELQHQGSAAASEMEMEKLKHDYQKSVQMA 417

Query: 420 QQWKKMYENLHEFCVNELLDGDQ 442
            Q KKM E LH+FCV ELLDG Q
Sbjct: 418 NQLKKMNEKLHQFCVKELLDGSQ 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447253|ref|XP_004141383.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus] gi|449531442|ref|XP_004172695.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/458 (64%), Positives = 363/458 (79%), Gaps = 18/458 (3%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           M LL+ASSS+ D+GIGCWDL +G+EQLRYKSCASPPHGL CVG++FLA SQLR+ P+A++
Sbjct: 1   MVLLVASSSI-DSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRD-PAATA 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GS+LYWSWSKPQVEVKS PAEPI  +A+N  GTYI GGG SGDIY+WEV SGRLLKKWHA
Sbjct: 59  GSVLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHA 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYRAVTCLVFSED S L+SGSEDGC+R+WSL+TVF++   + A HLY HSFTGH L +TD
Sbjct: 119 HYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IV+GYGG +A I+S+S DRTCKVWSL KG+LLRNI+FPS+IDAIALDP EHVFY G RDG
Sbjct: 179 IVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDG 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            IY AALNA+ PS+S YG+HI+GS+S+ SK+VT LAY S+G+LLISGSEDG +RVWD  T
Sbjct: 239 KIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRT 298

Query: 300 HNIVRMFRLAK----GPVNNILVV-RRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTS 354
           +N++R+FR +K    GPVNNIL+V ++PL     S S    S R+H   LPP L K+  S
Sbjct: 299 NNVIRVFRHSKGNKAGPVNNILLVQQQPL---PKSQSTSQGSLRKHRPLLPPALAKFENS 355

Query: 355 ADEDVDKKGVIRLPSLYNAPRDA---SYISHRTIENHIKELQQQGSSAATEMEVERLKRE 411
            DED +  GVI  PS    P+++   S++S   +++ I ELQQQG SAAT ME+ERLK +
Sbjct: 356 KDED-EYTGVIIDPS--GPPKESTGFSFLSSHVMDDQITELQQQG-SAATGMELERLKHD 411

Query: 412 CNRTLQMVQQWKKMYENLHEFCVNELLDGDQVDGSKRN 449
             ++ QM+Q W+KMY+NLH+FCVNELLDG+Q    + N
Sbjct: 412 YGKSKQMLQHWRKMYDNLHQFCVNELLDGNQTKNIEGN 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502523|ref|XP_003621550.1| WD repeat-containing protein [Medicago truncatula] gi|87241484|gb|ABD33342.1| WD40-like [Medicago truncatula] gi|355496565|gb|AES77768.1| WD repeat-containing protein [Medicago truncatula]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/443 (59%), Positives = 338/443 (76%), Gaps = 4/443 (0%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           M +++ASS+ A  GIGCWDL +G+EQ+RYKS +SP HGL  VG RFLASSQLR+  S SS
Sbjct: 1   MVVVLASSTDASGGIGCWDLNTGSEQIRYKSFSSPSHGLVSVGDRFLASSQLRD-ASTSS 59

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
            S+ +WSWSKPQVEVKS P+EPI P+A+N  GTY+ GGG SG+IY+WEV +GRLLKKWH 
Sbjct: 60  ASVFFWSWSKPQVEVKSFPSEPITPLASNHSGTYLVGGGLSGEIYLWEVETGRLLKKWHG 119

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H  AVTCLVFSED S LISG ++G VR+WSLL +F++   + AS +Y +SF+ HTL + D
Sbjct: 120 HNTAVTCLVFSEDDSLLISGFKNGSVRVWSLLMIFDDVRRREASKIYEYSFSDHTLCVND 179

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           +VIGYGG +A I SAS+DRTCKVW+L  G L RNIVFPS I AIALDPAEHV YAGS DG
Sbjct: 180 VVIGYGGCNAIIASASDDRTCKVWTLSNGMLQRNIVFPSKIKAIALDPAEHVLYAGSEDG 239

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG-DLLISGSEDGMVRVWDPIT 299
            I++AALN    +T+    +I GS S+HSKAVTCLAYS   + LISGS+DG+VRVW+  T
Sbjct: 240 KIFVAALNTTRITTNDQVSYITGSFSNHSKAVTCLAYSAAENFLISGSDDGIVRVWNAST 299

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
           HNI+R+F+ AKGP+ NILV+R+   L+    SN   +S++ G+Q  PPL+KY  S DED 
Sbjct: 300 HNIIRVFKHAKGPITNILVLRQENDLSNPMSSNLQGTSKKKGAQF-PPLEKYANSMDEDS 358

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMV 419
           DK  ++ L    N   D SY+S + I ++ KELQ QGS+AA+EME+E+LKR+C +++QMV
Sbjct: 359 DKTTIVSLGG-GNICMDVSYLSSQVISSYSKELQSQGSAAASEMEIEKLKRDCQKSVQMV 417

Query: 420 QQWKKMYENLHEFCVNELLDGDQ 442
            +WKKMYENLH+FCV E+LDG++
Sbjct: 418 NKWKKMYENLHQFCVKEMLDGNE 440

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816142|ref|XP_002875954.1| hypothetical protein ARALYDRAFT_485276 [Arabidopsis lyrata subsp. lyrata] gi|297321792|gb|EFH52213.1| hypothetical protein ARALYDRAFT_485276 [Arabidopsis lyrata subsp. lyrata]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/451 (57%), Positives = 330/451 (73%), Gaps = 19/451 (4%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+ + +SS  D GIG WDL++G EQLR+K CASP HGL  VG++FLASSQLR++ S SS
Sbjct: 1   MEISVIASSSIDEGIGSWDLKTGKEQLRFKQCASPAHGLTAVGEKFLASSQLRKE-STSS 59

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GSI YWSW+KPQVEV+S P EPIK + AN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct: 60  GSIFYWSWTKPQVEVRSFPVEPIKALVANNEGTYLVGGGSSGDIYLWEVATGKLLKKWHG 119

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYR+VTCLVFS D S LISGS+DG VR+WSL+ +F++   Q+   LY H+F  HT+ +TD
Sbjct: 120 HYRSVTCLVFSGDDSLLISGSQDGSVRVWSLIRLFDDFPRQQGKTLYEHNFNEHTMSVTD 179

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IVI YGG +A I+SASEDRTCKVWSL +G+LL+NI+FPS I+A+ALDP  +VFYAG RDG
Sbjct: 180 IVIDYGGCNAMIISASEDRTCKVWSLSRGKLLKNIIFPSAINALALDPGGYVFYAGGRDG 239

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299
            IYI A+NA    TS YG  ++GS+S+ SKAVTCLAY T G+LLISGSE+G+V VWDP +
Sbjct: 240 KIYIGAINA----TSEYGTQVLGSVSEQSKAVTCLAYCTEGNLLISGSEEGVVCVWDPKS 295

Query: 300 HNIVRMFRLAKG---PVNNILVVRRPLYLNLGSFSNPHTSS-RRHGSQLPPPLDKYVTSA 355
              VR     KG   PVNNI +VR+ +  N    SN   SS +R GS +PPPL+KY  S 
Sbjct: 296 RRPVRTLGRGKGKGPPVNNIQIVRKTIVDN----SNKTQSSWKRRGSLMPPPLEKYERSG 351

Query: 356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRT 415
           ++ +D    +  P   + P  +S++S   I+  ++ELQQQG SAATE+E+ERLK E  R+
Sbjct: 352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVRELQQQG-SAATEIEMERLKLEYKRS 410

Query: 416 LQMVQQWKKMYENLHEFCVNELLDGDQVDGS 446
           LQM  QW+K YENL +  + E    +Q+ GS
Sbjct: 411 LQMNDQWQKNYENLLQVVMEE----EQIGGS 437

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229101|ref|NP_190487.1| root initiation defective 3 protein [Arabidopsis thaliana] gi|6723388|emb|CAB66397.1| putative protein [Arabidopsis thaliana] gi|28416679|gb|AAO42870.1| At3g49180 [Arabidopsis thaliana] gi|110735955|dbj|BAE99952.1| hypothetical protein [Arabidopsis thaliana] gi|332644987|gb|AEE78508.1| root initiation defective 3 protein [Arabidopsis thaliana]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/451 (54%), Positives = 326/451 (72%), Gaps = 19/451 (4%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+ + +SS  D GIG WDL++G EQL++K CASP HGL  VG++FLASSQL  +   +S
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSAR--NTS 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GSI YWSW+KPQ EVKS P EPIK +AAN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct: 59  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYR+VTCLVFS D S L+SGS+DG +R+WSL+ +F++ + Q+ + LY H+F  HT+ +TD
Sbjct: 119 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IVI YGG +A I+S+SEDRTCKVWSL +G+LL+NI+FPSVI+A+ALDP   VFYAG+RD 
Sbjct: 179 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            IYI A+NA    TS YG  ++GS+S+  KA+TCLAY + G+LLISGSEDG+V VWDP +
Sbjct: 239 KIYIGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKS 294

Query: 300 HNIVRMFRLA----KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA 355
              VR    A    KGPVNNI +VR+ +  N    +    S +  G+ +PPPL+KY    
Sbjct: 295 LRHVRTLIHAKGSRKGPVNNIQIVRKTIVAN---SNKTQVSWKSRGALIPPPLEKYERPV 351

Query: 356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRT 415
           ++ +D    +  P   + P  +S++S   I+  +KELQQQG SAATEME+ERLK E  R+
Sbjct: 352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQG-SAATEMEMERLKLEYKRS 410

Query: 416 LQMVQQWKKMYENLHEFCVNELLDGDQVDGS 446
           LQM +QW+K YENL +  + E    +Q+ G+
Sbjct: 411 LQMNEQWQKNYENLLQVVMEE----EQIGGT 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592898|gb|AAM64848.1| unknown [Arabidopsis thaliana]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/451 (54%), Positives = 326/451 (72%), Gaps = 19/451 (4%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+ + +SS  D GIG WDL++G EQL++K CASP HGL  VG++FLASSQL  +   +S
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSAR--NTS 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GSI YWSW+KPQ EVKS P EPIK +AAN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct: 59  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYR+VTCLVFS D S L+SGS+DG +R+WSL+ +F++ + Q+ + LY H+F  HT+ +TD
Sbjct: 119 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IVI YGG +A I+S+SEDRTCKVWSL +G+LL+NI+FPSVI+A+ALDP   VFYAG+RD 
Sbjct: 179 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            IYI A+NA    TS YG  ++GS+S+  KA+TCLAY + G+LLISGSEDG+V VWDP +
Sbjct: 239 KIYIGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKS 294

Query: 300 HNIVRMFRLAKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA 355
              VR    AKG    PVNNI +VR+ +  N    +    S +  G+ +PPPL+KY    
Sbjct: 295 LRHVRTLIHAKGSRKCPVNNIQIVRKTIVAN---SNKTQVSWKSRGALIPPPLEKYERPV 351

Query: 356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRT 415
           ++ +D    +  P   + P  +S++S   I+  +KELQQQG SAATEME+ERLK E  R+
Sbjct: 352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQG-SAATEMEMERLKLEYKRS 410

Query: 416 LQMVQQWKKMYENLHEFCVNELLDGDQVDGS 446
           LQM +QW+K YENL +  + E    +Q+ G+
Sbjct: 411 LQMNEQWQKNYENLLQVVMEE----EQIGGT 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2082891	438	RID3 "AT3G49180" [Arabidopsis	0.957	0.986	0.545	2e-127
DICTYBASE|DDB_G0288659	560	wdr18 "WD40 repeat-containing	0.527	0.425	0.345	4.2e-53
UNIPROTKB|Q3SZD4	432	WDR18 "WD repeat-containing pr	0.871	0.909	0.326	1.5e-44
RGD|1310646	431	Wdr18 "WD repeat domain 18" [R	0.796	0.832	0.328	3.5e-43
UNIPROTKB|Q9BV38	432	WDR18 "WD repeat-containing pr	0.873	0.912	0.318	5.7e-43
MGI|MGI:2158400	431	Wdr18 "WD repeat domain 18" [M	0.793	0.830	0.317	1.7e-41
ZFIN|ZDB-GENE-040905-4	431	wdr18 "WD repeat domain 18" [D	0.898	0.939	0.268	1.1e-34
POMBASE|SPAC13G7.08c	446	crb3 "WD repeat protein Crb3"	0.541	0.547	0.286	2.3e-28
ASPGD|ASPL0000074691	573	AN4771 [Emericella nidulans (t	0.507	0.399	0.303	5e-22
UNIPROTKB|G5EGX7	462	MGCH7_ch7g852 "WD repeat-conta	0.727	0.709	0.254	1.4e-17

TAIR|locus:2082891 RID3 "AT3G49180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 246/451 (54%), Positives = 326/451 (72%)

Query:     1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
             ME+ + +SS  D GIG WDL++G EQL++K CASP HGL  VG++FLASSQL  + +  S
Sbjct:     1 MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 58

Query:    61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
             GSI YWSW+KPQ EVKS P EPIK +AAN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct:    59 GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 118

Query:   121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
             HYR+VTCLVFS D S L+SGS+DG +R+WSL+ +F++ + Q+ + LY H+F  HT+ +TD
Sbjct:   119 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 178

Query:   181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
             IVI YGG +A I+S+SEDRTCKVWSL +G+LL+NI+FPSVI+A+ALDP   VFYAG+RD 
Sbjct:   179 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 238

Query:   241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
              IYI A+NA    TS YG  ++GS+S+  KA+TCLAY + G+LLISGSEDG+V VWDP +
Sbjct:   239 KIYIGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKS 294

Query:   300 HNIVRMFRLAKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA 355
                VR    AKG    PVNNI +VR+ +  N    +    S +  G+ +PPPL+KY    
Sbjct:   295 LRHVRTLIHAKGSRKGPVNNIQIVRKTIVANS---NKTQVSWKSRGALIPPPLEKYERPV 351

Query:   356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRT 415
             ++ +D    +  P   + P  +S++S   I+  +KELQQQGS AATEME+ERLK E  R+
Sbjct:   352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGS-AATEMEMERLKLEYKRS 410

Query:   416 LQMVQQWKKMYENLHEFCVNELLDGDQVDGS 446
             LQM +QW+K YENL +  + E    +Q+ G+
Sbjct:   411 LQMNEQWQKNYENLLQVVMEE----EQIGGT 437

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0288659 wdr18 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 423 (154.0 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 87/252 (34%), Positives = 141/252 (55%)

Query:     4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
             +IA +S  D+ +  +DL +G     + +  +  +G   +G  + A+SQ      A+   I
Sbjct:    42 VIAITSKEDSSLFIYDLRNGNLIATFNNTNNDTNGFCTIGSEYFATSQ------ANKAMI 95

Query:    64 LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
               ++W K Q   K+   E   PI  +S G Y+  G  SG +Y+WEV++G LL+ W AHY 
Sbjct:    96 NIYNWKKDQPIYKTPIQEKSGPICCSSDGNYLVMGSASGMVYLWEVSTGTLLRMWEAHYN 155

Query:   124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL-HSFTGHTLRITDIV 182
              ++C+ F++D  ++I+  +DG +  WS    FE+C  +  S L   +SF+ H+L IT IV
Sbjct:   156 KISCITFTKDDFYIITAGDDGIINCWS----FEQCLDRDVSLLRARNSFSDHSLGITSIV 211

Query:   183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 242
               +GG ++ + S S DRTCK+W L+ GR + +I+FP+ + ++ LD  E   Y G  DG I
Sbjct:   212 CSFGGCNSRLFSVSLDRTCKIWDLVTGRCINSIIFPTYLTSVCLDSTETTCYVGGGDGII 271

Query:   243 Y---IAALNAES 251
             Y   +  LN +S
Sbjct:   272 YQTDLIQLNPQS 283

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q3SZD4 WDR18 "WD repeat-containing protein 18" [Bos taurus (taxid:9913)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 143/438 (32%), Positives = 215/438 (49%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+ + + S A     C  W+L SGA  L Y+   + P GLA +   +L ++QL      
Sbjct:     5 MEVAVCTDSAAQLW-SCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------ 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  +  + +G Y+  G  S +IY+WEV++G LL  
Sbjct:    58 GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ D S  ISG +D  V  WSL +V +   S+  +    H ++ HTL 
Sbjct:   117 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + +AS D+T K+W +  G LL +++F   I A+ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGG 234

Query:   238 RDGSIYIAAL----NAESPSTSSYGMHIIGSL-SDHSKAVTCLAYST-GDLLISGSEDGM 291
              DGSI+   L         S      H  G +   H   VTCL+ ST G +L+SGS D  
Sbjct:   235 SDGSIFQVDLCTWPGQREKSFQPEQEH--GKVFRGHRNQVTCLSVSTDGSVLLSGSHDET 292

Query:   292 VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY 351
             VR+WD  +   +R   L KGPV N  ++  P+ +    F        R G  LP   +K+
Sbjct:   293 VRLWDVQSQQCLRTVTL-KGPVTNACIMLAPVSMLSSDF--------RPGLPLPH-FNKH 342

Query:   352 VTSADE-DVDKKG--VIRLPSLYNAPRDASYISH---------RTIENHIKELQQQGSSA 399
             +  A+  D   +G  ++RL  L+    + SY+            T+E ++   Q Q    
Sbjct:   343 LLGAEHGDEPHRGGLMLRL-GLHQQGSEPSYLERVEQLQAVMSSTLEKNVLGGQDQLRIR 401

Query:   400 ATEMEVE-RLKRECNRTL 416
              TE+E E R  R+ NR L
Sbjct:   402 VTELEDEVRNLRKINRDL 419

GO:0005737 "cytoplasm" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

RGD|1310646 Wdr18 "WD repeat domain 18" [Rattus norvegicus (taxid:10116)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 128/390 (32%), Positives = 196/390 (50%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+++ + S A     C  W+L SGA  L Y+   + P GLA +   +L ++Q       
Sbjct:     5 MEVVVCTDSAAPLW-SCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------Q 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV++G LL  
Sbjct:    58 GKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ DGS  +S  +D  V  WSL +V +   S+  +    H ++ HTL 
Sbjct:   117 LSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGG 234

Query:   238 RDGSIYIAAL-NAESPSTSSYGMHI-IGSL-SDHSKAVTCLAYST-GDLLISGSEDGMVR 293
              DGSI+   L +   P   S+      G +   H   VTCL+ ST G +L+SGS D  VR
Sbjct:   235 SDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVR 294

Query:   294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP-PPLDKYV 352
             +WD  +   VR   L KGPV N  +   P      S  NP          LP P  +K++
Sbjct:   295 LWDVKSKQCVRTVPL-KGPVTNAAITLAP-----PSMLNPEFRP-----SLPLPHFNKHL 343

Query:   353 TSADE-DVDKKGVIRLP-SLYNAPRDASYI 380
               A+  D  + G +RL   L+   ++ SY+
Sbjct:   344 LGAEHGDEAQGGGLRLQLGLHLQGKEPSYL 373

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q9BV38 WDR18 "WD repeat-containing protein 18" [Homo sapiens (taxid:9606)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 139/437 (31%), Positives = 213/437 (48%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+ + + S A     C  W+L SGA  L Y+   + P GLA +   +L ++QL      
Sbjct:     5 MEVAVCTDSAAPMW-SCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------ 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  + A+ +G Y+  G  +  I++WEV++G LL  
Sbjct:    58 GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ D S  ISG +D  V +WSL +V +   S+  +    H ++ H L 
Sbjct:   117 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHALP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + ++S D+T K+W +  G LL +++F   I A+ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGG 234

Query:   238 RDGSIYIAALNAESPSTSSYGMHI---IGSL-SDHSKAVTCLAYST-GDLLISGSEDGMV 292
              +GSI+   L    P       H     G +   H   VTCL+ ST G +L+SGS D  V
Sbjct:   235 SEGSIFQVDLFTW-PGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETV 293

Query:   293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP-PPLDKY 351
             R+WD  +   +R   L KGPV N  ++  P+ + L S   P          LP P  +K+
Sbjct:   294 RLWDVQSKQCIRTVAL-KGPVTNAAILLAPVSM-LSSDFRP---------SLPLPHFNKH 342

Query:   352 VTSADE-DVDKKGVIRLP-SLYNAPRDASYISHR---------TIENHIKELQQQGSSAA 400
             +  A+  D  + G + L   L+    + SY+            T+E  +   Q Q     
Sbjct:   343 LLGAEHGDEPRHGGLTLRLGLHQQGSEPSYLDRTEQLQAVLCSTMEKSVLGGQDQLRVRV 402

Query:   401 TEMEVE-RLKRECNRTL 416
             TE+E E R  R+ NR L
Sbjct:   403 TELEDEVRNLRKINRDL 419

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2158400 Wdr18 "WD repeat domain 18" [Mus musculus (taxid:10090)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 124/391 (31%), Positives = 193/391 (49%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+++ + + A     C  W+L SGA  L Y+   + P GLA +   +L ++Q       
Sbjct:     5 MEVVVCTDAAAQLW-SCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------Q 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV +G LL  
Sbjct:    58 GKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ DGS  +S  +D     WSL +V +   S+  +    H ++ HTL 
Sbjct:   117 LSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPR--HVWSQHTLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGG 234

Query:   238 RDGSIYIAALNAESPSTSSYGMHI---IGSL-SDHSKAVTCLAYST-GDLLISGSEDGMV 292
              DGSI+   L    P    +        G +   H   VTCL+ ST G +L+SGS D  V
Sbjct:   235 SDGSIFQVDL-CSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHDESV 293

Query:   293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP-PPLDKY 351
             R+WD  +   +R   L KGPV N  ++  P      S  NP          LP P  +K+
Sbjct:   294 RLWDVKSKQCLRTVTL-KGPVTNAAIILAP-----PSMLNPEFRP-----SLPLPHFNKH 342

Query:   352 VTSADE-DVDKKGVIRLP-SLYNAPRDASYI 380
             +  A+  D  + G +RL   L+   ++ SY+
Sbjct:   343 LLGAEHGDEAQGGGLRLQLGLHLQGKEPSYL 373

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040905-4 wdr18 "WD repeat domain 18" [Danio rerio (taxid:7955)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 118/439 (26%), Positives = 206/439 (46%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             +E+++++ S       C  +D  +G+E L Y+   +    L  +   ++  +QL      
Sbjct:     5 VEVVLSADSAGQL-FNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL------ 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +    +  + A+  G Y+  G     IY+WEV++G LL  
Sbjct:    58 GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAGIAEA-IYLWEVSTGNLLAI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                H++ ++C+ F++D S  +SG +D    IW+L +V +  +S R      H  + H+L 
Sbjct:   117 LSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQ-LDSSRTPEPR-HILSRHSLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITDI  G  G  A + +AS D+T KVW +  G +L +++F   I ++  DP E+  + G 
Sbjct:   175 ITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGG 234

Query:   238 RDGSIYIAALNAESPSTS-SYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
              DG+I+  +L + S S   ++     G+     H   VTCL+ S  G +L+SGS D  VR
Sbjct:   235 SDGNIFQVSLCSTSLSRDKTFQSDSEGNQVFKGHRNLVTCLSVSMDGTVLLSGSNDETVR 294

Query:   294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVT 353
             +WD  +   +      +GPV N  ++  P  + L S S+P     R    L P      +
Sbjct:   295 MWDVQSKQCIWTIN-HRGPVTNAAIIPAPANMFL-SDSHPAVPLPRFSRHLNP------S 346

Query:   354 SADEDVDKKGV-IRLPSLYNAPRDASYISHR----TIENHIKELQQQGSSAATEMEVERL 408
                +     G+ +RL +    P + +Y+       ++   + +    G    T++ V  L
Sbjct:   347 EQGDGTGTGGMSLRLGANTQEP-EGTYLEKAEELYSLMCAVTDKSVFGDGENTKVRVSEL 405

Query:   409 KRECNRTLQMVQQWKKMYE 427
             + E  RTL+ +   K +YE
Sbjct:   406 EEEV-RTLKKIN--KDLYE 421

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0007275 "multicellular organismal development" evidence=IEA

POMBASE|SPAC13G7.08c crb3 "WD repeat protein Crb3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 293 (108.2 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 74/258 (28%), Positives = 128/258 (49%)

Query:     1 MELLIASSSVAD---TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS 57
             MELL++     +   + + C +L +G     ++  +SP     C     L S+Q   +P 
Sbjct:     1 MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQ 58

Query:    58 ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
              +       ++ K  ++   +  E +  + ++  G+++A G + G++Y+W + SG L+  
Sbjct:    59 LN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYF 113

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGH 174
             + AHY+ +T L FS DG  L + S DG V  W + T+ ++    E+  +S   +  F+GH
Sbjct:   114 FRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGH 173

Query:   175 TLRITDIVIGYGG-VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233
                I  + IG G  VS  + +ASED T ++W +  G LL  I  PS    + +DP+E V 
Sbjct:   174 KRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVV 233

Query:   234 YAGSRDGSIYIAALNAES 251
             Y G+  G I+I      S
Sbjct:   234 YVGNEKGIIWIPLYTGSS 251

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005720 "nuclear heterochromatin" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0030702 "chromatin silencing at centromere" evidence=IMP

GO:0032153 "cell division site" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0097344 "Rix1 complex" evidence=IDA

ASPGD|ASPL0000074691 AN4771 [Emericella nidulans (taxid:162425)]

 Score = 281 (104.0 bits), Expect = 5.0e-22, P = 5.0e-22
 Identities = 75/247 (30%), Positives = 127/247 (51%)

Query:     6 ASSSVADTGIGCWDLE-SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSIL 64
             AS+S+ D GI   +L+ S   +  +K  ++ P+ LA       A+        A   ++ 
Sbjct:    18 ASASLRDVGICLHELQPSPTLRSTFKKSSTSPNCLAVSASHVFAAQ-------AEKATVH 70

Query:    65 YWSWSKPQVEVKSLP-AEPIKPIAA--NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
              +S  K   E  ++P  E I+ IA   + +G  +  G + G + +WEV +GR +    +H
Sbjct:    71 VYSREKGNQEA-TVPFPERIRSIAVAGSKNGDIVVLGTEGGRLILWEVCTGRQVATTASH 129

Query:   122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV--FEECES---QRASHLYLHSFTGHTL 176
              R VT +V     +F++SGS D  V +WSL+ +  F +  S   Q+  +  + +F+ H  
Sbjct:   130 LRPVTSVVVDPSSNFILSGSSDASVHVWSLVDLLSFTKPPSGRNQQPPNSPIRTFSNHRA 189

Query:   177 RITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235
              ++ IV+G+  G     +SA++D T  VW    G +LRN + P+   ++ALDP +  FYA
Sbjct:   190 AVSAIVVGHSTGRYNIAISAAQDNTAIVWDYRTGHVLRNFLLPASAISLALDPVDRAFYA 249

Query:   236 GSRDGSI 242
             G  DGS+
Sbjct:   250 GYEDGSV 256

GO:0000027 "ribosomal large subunit assembly" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030702 "chromatin silencing at centromere" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0097344 "Rix1 complex" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G5EGX7 MGCH7_ch7g852 "WD repeat-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 240 (89.5 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 92/362 (25%), Positives = 159/362 (43%)

Query:    92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
             G  +  G   G I +WE  +GRL+     H + VTCL  +     ++SGS+D  V +WSL
Sbjct:    96 GDVLILGTAEGRIMLWEFCTGRLVSTPACHVQPVTCLAVTPHS--VLSGSDDSNVHVWSL 153

Query:   152 LTVFE-ECESQRASHLYLHSFTGHTLRITDIVI------GYGGVSATI-VSASEDRTCKV 203
               + E +  +++A      + + H   IT +        G G   +T+ VSAS+D+TC V
Sbjct:   154 AQLLELDIVAEQAPE---RTLSNHRAAITALAASSGADGGSGATDSTLCVSASKDKTCVV 210

Query:   204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE----SPSTSSYGM 259
             W+   G  LR ++FP+    ++LDP        + DGS+Y+  L  E     P  +    
Sbjct:   211 WNYRTGLPLRTLLFPASPLCLSLDPCTRALTLAADDGSVYLVELFGEPALLGPHAAEAAS 270

Query:   260 HIIGSLSDHSKA------VTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312
              ++   S    A       +CLA S  G +L+SG   G +  W    ++           
Sbjct:   271 TVVQVTSPFGMAPPEAGPASCLATSYDGTVLLSGHAKGKILQWSLADNSPPTELADLNAA 330

Query:   313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL--DK-YVTSADEDVDKKGVIRLPS 369
             V+N++ V  PL       SN   S+ +  + + P    DK Y  +A  +VD  G    PS
Sbjct:   331 VSNLVFVP-PL-----PSSNFGQSTTKSPTIVKPAANADKTYAFTAHFNVDL-GDSTEPS 383

Query:   370 LYNAPRDASYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQWKKMYENL 429
              ++   +    S   ++  I   QQ  ++A   +       + N   ++ +Q +++ + +
Sbjct:   384 RFDKLMNTPGFSEDVLKQAILAFQQPSATATPAVAANGSSDDRNEVEELRRQNEELLQIV 443

Query:   430 HE 431
             +E
Sbjct:   444 NE 445

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BV38	WDR18_HUMAN	No assigned EC number	0.3073	0.8758	0.9143	yes	no
Q3SZD4	WDR18_BOVIN	No assigned EC number	0.3150	0.8713	0.9097	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	451
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-36
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
smart00320	40	smart00320, WD40, WD40 repeats	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  135 bits (342), Expect = 1e-36
 Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 36/298 (12%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQ-RFLASSQLREQPSASSGS 62
           L+A+ S  D  I  WDLE+G      K    P   +A      +LAS        +S  +
Sbjct: 23  LLATGS-GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG-------SSDKT 74

Query: 63  ILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           I  W     +  V++L      +  +A +  G  ++   +   I +W+V +G+ L     
Sbjct: 75  IRLWDLETGEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H   V  + FS DG+F+ S S+DG +++W L            +   + + TGHT  +  
Sbjct: 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDL-----------RTGKCVATLTGHTGEVNS 182

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD 239
           +     G    ++S+S D T K+W L  G+ L  +    + ++++A  P  ++  +GS D
Sbjct: 183 VAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240

Query: 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           G+I +  L              + +LS H+ +VT LA+S  G  L SGS DG +R+WD
Sbjct: 241 GTIRVWDLRTGEC---------VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (303), Expect = 4e-31
 Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 57  SASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115
            +  G+I  W     ++         P++ +AA++ GTY+A G     I +W++ +G  +
Sbjct: 27  GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86

Query: 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT 175
           +    H   V+ + FS DG  L S S D  +++W + T   +C         L +  GHT
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKC---------LTTLRGHT 135

Query: 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP-SVIDAIALDPAEHVFY 234
             +  +   +      + S+S+D T K+W L  G+ +  +      ++++A  P      
Sbjct: 136 DWVNSVA--FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL 193

Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVR 293
           + S DG+I +  L+             +G+L  H   V  +A+S  G LL SGSEDG +R
Sbjct: 194 SSSSDGTIKLWDLSTGKC---------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244

Query: 294 VWDPITHNIVRMFRLAKGPVNNI 316
           VWD  T   V+        V ++
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSL 267

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (281), Expect = 5e-28
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)

Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184
           VTC+ FS DG  L +GS DG +++W L T              L +  GHT  + D+   
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETG-----------ELLRTLKGHTGPVRDVA-- 58

Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY 243
                  + S S D+T ++W L  G  +R +    S + ++A  P   +  + SRD +I 
Sbjct: 59  ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNI 302
           +  +      T         +L  H+  V  +A+S  G  + S S+DG +++WD  T   
Sbjct: 119 VWDVETGKCLT---------TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

Query: 303 VRMFRLAKGPVNNI 316
           V       G VN++
Sbjct: 170 VATLTGHTGEVNSV 183

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  110 bits (277), Expect = 2e-27
 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 30/238 (12%)

Query: 86  IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
           +A +  G  +A G   G I +W++ +G LL+    H   V  +  S DG++L SGS D  
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74

Query: 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT---IVSASEDRTCK 202
           +R+W L T   EC         + + TGHT  ++ +       S     + S+S D+T K
Sbjct: 75  IRLWDLET--GEC---------VRTLTGHTSYVSSVAF-----SPDGRILSSSSRDKTIK 118

Query: 203 VWSLLKGRLLRNIVF-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           VW +  G+ L  +      ++++A  P      + S+DG+I +  L              
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--------- 169

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318
           + +L+ H+  V  +A+S  G+ L+S S DG +++WD  T   +   R  +  VN++  
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  103 bits (257), Expect = 6e-24
 Identities = 86/303 (28%), Positives = 133/303 (43%), Gaps = 31/303 (10%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLA--CVGQRFLASSQLREQPSAS 59
             L+AS S  D  I  WDL +G           P   LA    G   +AS        +S
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG-------SS 219

Query: 60  SGSILYWSWSKPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR-LLKK 117
            G+I  W  S  ++   +L       +++ S  G+ +A G   G I +W++ S   LL+ 
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
              H  +V  + FS DG  L SGS DG VR+W L T            L   +  GH   
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---------KLLSSLTLKGHEGP 330

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
           ++ +     G S  +   S+D T ++W L  G+ L+ +   S + +++  P   V  +GS
Sbjct: 331 VSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389

Query: 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
            DG++ +  L+  S         ++ +L  H+  VT L +S  G  L SGS D  +R+WD
Sbjct: 390 TDGTVRLWDLSTGS---------LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Query: 297 PIT 299
             T
Sbjct: 441 LKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.2 bits (204), Expect = 4e-17
 Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 31/337 (9%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
             ++ +SS  D  +  WDL +  + +R        H  +     F    +L    S+  G
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRT----LEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 62  SILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWH 119
           +I  W     + +   +   +P+  +A +  G   IA G   G I +W++++G+LL+   
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238

Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179
           + +       FS DGS L SGS DG +R+W L          R+S   L + +GH+  + 
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL----------RSSSSLLRTLSGHSSSVL 288

Query: 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDP-AEHVFYA 235
            +   +      + S S D T ++W L  G+LL ++        + +++  P    +   
Sbjct: 289 SVA--FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295
           GS DG+I +  L    P  +  G   + S+S             G ++ SGS DG VR+W
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD---------GRVVSSGSTDGTVRLW 397

Query: 296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332
           D  T +++R        V ++        L  GS  N
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 26/191 (13%)

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRIT 179
           H  ++T + FS DG  L+SGS DG +++W L                + S  G H   ++
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN----------GEKLIKSLEGLHDSSVS 113

Query: 180 DIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE-HVFYA 235
            + +     ++ ++++S  D T K+W L     L   +      + ++A  P    +   
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVR 293
            S DG+I +  L    P         + +L+ H+  V+ LA+S   G L+ SGS DG +R
Sbjct: 174 SSLDGTIKLWDLRTGKP---------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 294 VWDPITHNIVR 304
           +WD  T  ++R
Sbjct: 225 LWDLSTGKLLR 235

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
           SG LLK    H   VT + FS DG +L SGS+DG +++W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
           G+LL+    H   VT + FS DG+ L SGS+DG VR+W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLA 276
              +  +A  P   +   GS DG+I +  L       +  G         H+  V    A
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---------HTGPVRDVAA 59

Query: 277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314
            + G  L SGS D  +R+WD  T   VR        V+
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           + +L  H+  VT +A+S  G  L SGS+DG +++WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 261 IIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           ++ +L  H+  VT +A+S  G+LL SGS+DG VRVWD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319
             +L  H+  VTC+A+S  G LL +GS DG ++VWD  T  ++R  +   GPV ++   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0646	476	consensus WD40 repeat protein [General function pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
KOG0639	705	consensus Transducin-like enhancer of split protei	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG1188	376	consensus WD40 repeat protein [General function pr	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.86
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG2314	698	consensus Translation initiation factor 3, subunit	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1334	559	consensus WD40 repeat protein [General function pr	99.83
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG2321	703	consensus WD40 repeat protein [General function pr	99.78
KOG2315	566	consensus Predicted translation initiation factor	99.78
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
KOG1310	758	consensus WD40 repeat protein [General function pr	99.76
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.7
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.69
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.57
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.55
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.54
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.53
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.52
KOG2315	566	consensus Predicted translation initiation factor	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
KOG4547	541	consensus WD40 repeat-containing protein [General	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.48
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.48
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.46
KOG2314	698	consensus Translation initiation factor 3, subunit	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.38
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.36
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.33
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.33
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.29
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.29
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.26
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
COG4946	668	Uncharacterized protein related to the periplasmic	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.24
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.24
COG4946	668	Uncharacterized protein related to the periplasmic	99.23
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.2
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.18
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.15
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.15
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.14
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.14
KOG2695	425	consensus WD40 repeat protein [General function pr	99.11
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.08
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.06
PRK04043	419	tolB translocation protein TolB; Provisional	99.03
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.01
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.0
KOG2695	425	consensus WD40 repeat protein [General function pr	98.99
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.99
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.96
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.91
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.91
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.9
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.84
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.82
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.73
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.73
PRK02888	635	nitrous-oxide reductase; Validated	98.72
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.71
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.67
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.66
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.66
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.55
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.54
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.54
PRK02888	635	nitrous-oxide reductase; Validated	98.53
KOG3621	726	consensus WD40 repeat-containing protein [General	98.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.52
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.51
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.46
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.46
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.45
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.43
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.41
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.41
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.39
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.39
KOG3621	726	consensus WD40 repeat-containing protein [General	98.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.32
COG3391	381	Uncharacterized conserved protein [Function unknow	98.29
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.28
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.22
COG3391	381	Uncharacterized conserved protein [Function unknow	98.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.18
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.06
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.98
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.97
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.96
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.95
KOG2395	644	consensus Protein involved in vacuole import and d	97.94
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.92
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.92
PHA02713	557	hypothetical protein; Provisional	97.83
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.82
KOG2444	238	consensus WD40 repeat protein [General function pr	97.8
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.74
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.71
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.7
PHA02713	557	hypothetical protein; Provisional	97.66
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.62
KOG2444	238	consensus WD40 repeat protein [General function pr	97.55
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.47
COG5276	370	Uncharacterized conserved protein [Function unknow	97.44
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.4
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.37
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.32
PRK13616	591	lipoprotein LpqB; Provisional	97.29
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.28
KOG2395	644	consensus Protein involved in vacuole import and d	97.23
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.21
PRK13616	591	lipoprotein LpqB; Provisional	97.14
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.14
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.1
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.1
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.06
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.04
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.0
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.89
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.89
PHA02790	480	Kelch-like protein; Provisional	96.82
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.77
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.72
PHA03098	534	kelch-like protein; Provisional	96.72
PHA03098	534	kelch-like protein; Provisional	96.6
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.59
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.58
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.56
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.55
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.49
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.44
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.38
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.34
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.25
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.25
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.23
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.23
COG5276	370	Uncharacterized conserved protein [Function unknow	96.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.16
PHA02790	480	Kelch-like protein; Provisional	96.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.1
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.09
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.03
PRK10115	686	protease 2; Provisional	95.96
PRK10115	686	protease 2; Provisional	95.88
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.88
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.82
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.65
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.59
COG5167	776	VID27 Protein involved in vacuole import and degra	95.47
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.46
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.46
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.43
PRK13684	334	Ycf48-like protein; Provisional	95.11
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.89
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.82
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.7
KOG2247	615	consensus WD40 repeat-containing protein [General	94.65
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.55
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.41
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.19
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	94.13
KOG2247	615	consensus WD40 repeat-containing protein [General	94.13
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.05
COG4590	733	ABC-type uncharacterized transport system, permeas	94.0
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.87
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.53
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.53
COG5167	776	VID27 Protein involved in vacuole import and degra	93.52
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.5
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.41
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.24
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.98
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.65
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	92.47
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.19
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.14
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.05
PLN02153	341	epithiospecifier protein	92.04
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.9
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.89
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.81
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	91.81
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.32
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.27
PLN02153	341	epithiospecifier protein	91.21
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	91.09
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.06
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.91
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.83
PLN02193	470	nitrile-specifier protein	90.79
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.77
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.66
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.41
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.22
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.21
PRK05560	805	DNA gyrase subunit A; Validated	90.11
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.0
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	89.04
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	88.79
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.62
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.37
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.31
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	88.16
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.87
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.76
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.34
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.21
PRK13684	334	Ycf48-like protein; Provisional	87.05
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.81
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.7
PLN02193	470	nitrile-specifier protein	86.23
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.03
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.0
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.26
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.01

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-54  Score=355.51  Aligned_cols=308  Identities=21%  Similarity=0.353  Sum_probs=277.9

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPA   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~   80 (451)
                      ..||+|+ .|.++++||+.+..+..+.++   |.+.|.|++  |+|||+.||+|+.+ |+|++||..+++...+  ..|.
T Consensus       128 ~~l~tGs-GD~TvR~WD~~TeTp~~t~Kg---H~~WVlcva--wsPDgk~iASG~~d-g~I~lwdpktg~~~g~~l~gH~  200 (480)
T KOG0271|consen  128 SRLVTGS-GDTTVRLWDLDTETPLFTCKG---HKNWVLCVA--WSPDGKKIASGSKD-GSIRLWDPKTGQQIGRALRGHK  200 (480)
T ss_pred             ceEEecC-CCceEEeeccCCCCcceeecC---CccEEEEEE--ECCCcchhhccccC-CeEEEecCCCCCcccccccCcc
Confidence            3689999 999999999999999988775   558999999  99999999999999 9999999998887644  5589


Q ss_pred             CCeeEEEECC-----CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           81 EPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        81 ~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      ..|++++|.|     ..++||+++.||.|+|||+..+.++..+.+|..+|+|++|-.+| ++++|+.|++|++|+.    
T Consensus       201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a----  275 (480)
T KOG0271|consen  201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRA----  275 (480)
T ss_pred             cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEc----
Confidence            9999999965     57799999999999999999999999999999999999998654 8999999999999998    


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeec-----------C-----------------------CeeEEEEeeCCCcE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYG-----------G-----------------------VSATIVSASEDRTC  201 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-----------~-----------------------~~~~l~s~~~d~~i  201 (451)
                             ....+.+.+.+|...|+.++.+.+           +                       .+..+++|+.|.++
T Consensus       276 -------~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl  348 (480)
T KOG0271|consen  276 -------LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL  348 (480)
T ss_pred             -------cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence                   446678899999999999988621           1                       11469999999999


Q ss_pred             EEEEcCCC-ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          202 KVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       202 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      .+|+.... +++..+. |...|+.+.|+|+++++++++.|..|++||.+++         +.+.++++|-.+|+.++|+.
T Consensus       349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsa  419 (480)
T KOG0271|consen  349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSA  419 (480)
T ss_pred             EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEecc
Confidence            99997654 3555544 8889999999999999999999999999999998         56889999999999999999


Q ss_pred             -CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          280 -GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       280 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                       .++|++|+.|.++++||+++.++...+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus       420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence             89999999999999999999999999999999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-52  Score=343.50  Aligned_cols=292  Identities=24%  Similarity=0.341  Sum_probs=264.4

Q ss_pred             CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      ..+|...|.|+.  |+|+|..|++|+.| .++++||..+...... ..|...|.|++|+|||+.||+|+.||.|++||.+
T Consensus       111 ~~GH~e~Vl~~~--fsp~g~~l~tGsGD-~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  111 IAGHGEAVLSVQ--FSPTGSRLVTGSGD-TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             cCCCCCcEEEEE--ecCCCceEEecCCC-ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            346778899999  99999999999999 9999999998776544 5689999999999999999999999999999999


Q ss_pred             CCcce-eeeccccCCeeEEEEcc-----CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          111 SGRLL-KKWHAHYRAVTCLVFSE-----DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       111 ~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      +|+++ ..+.+|...|++++|.|     ..++|++++.||.++|||+           ....++..+.+|+.+|+|++|.
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~-----------~~~~~~~~lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT-----------KLGTCVRTLSGHTASVTCVRWG  256 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc-----------cCceEEEEeccCccceEEEEEc
Confidence            99775 57899999999999976     5678999999999999999           4567888999999999999996


Q ss_pred             ecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEEC-----------CCCC---------------------
Q 012996          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD-----------PAEH---------------------  231 (451)
Q Consensus       185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~-----------~~~~---------------------  231 (451)
                      -.   .+|++|+.|++|++|+...|.+.+.+. |...|+.++.+           |.++                     
T Consensus       257 G~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~  333 (480)
T KOG0271|consen  257 GE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK  333 (480)
T ss_pred             CC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence            55   599999999999999999999998887 77888888766           3333                     


Q ss_pred             ----EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe
Q 012996          232 ----VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF  306 (451)
Q Consensus       232 ----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~  306 (451)
                          .|++|++|.++.+|+.....        +++..+.+|..-|+.+.||| +.++|+++.|..|++||-++|+.+.+|
T Consensus       334 ~~~erlVSgsDd~tlflW~p~~~k--------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf  405 (480)
T KOG0271|consen  334 DSGERLVSGSDDFTLFLWNPFKSK--------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF  405 (480)
T ss_pred             cCcceeEEecCCceEEEecccccc--------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence                49999999999999987764        67889999999999999999 999999999999999999999999999


Q ss_pred             ecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996          307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~  348 (451)
                      ++|-++|..++|+.|.++|++||.|.++++|+++..++..-+
T Consensus       406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL  447 (480)
T ss_pred             hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence            999999999999999999999999999999999988775544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.1e-50  Score=335.25  Aligned_cols=280  Identities=21%  Similarity=0.298  Sum_probs=260.8

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC--CcEEEEeccCCCEEEEEcC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~  110 (451)
                      +...++..+.  |+++++.+|+++.+ |.++||+..+.... ....|.+.|.++.|+|.  +..+|+|+.||++++|++.
T Consensus       173 gd~rPis~~~--fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCS--FSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeE--eecCCCeEEEeecC-CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            3445677777  99999999999999 99999999877554 44679999999999996  6689999999999999999


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      +..++..+.+|...|..++|+|+|++|+|++.|.+-++||+++           ...+....+|...|.+++|.++|  .
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-----------k~ElL~QEGHs~~v~~iaf~~DG--S  316 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-----------KSELLLQEGHSKGVFSIAFQPDG--S  316 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-----------chhhHhhcccccccceeEecCCC--c
Confidence            9999999999999999999999999999999999999999965           44556678999999999999999  8


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      +++||+.|..-+|||+++++++..+. |..+|.+++|+|+|..|++|+.|++++|||++..         ..+.++.+|.
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ipAH~  387 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------SELYTIPAHS  387 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---------ccceeccccc
Confidence            99999999999999999999998887 8899999999999999999999999999999987         4478899999


Q ss_pred             cceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          270 KAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       270 ~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      .-|+.+.|+|  |.+|+|++.|++++||...++.+++++.+|.+.|.++..+||++++++++.|.++++|.
T Consensus       388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999998  99999999999999999999999999999999999999999999999999999999996

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-45  Score=313.47  Aligned_cols=431  Identities=34%  Similarity=0.497  Sum_probs=322.3

Q ss_pred             CeEEEeecCCCCCC-eEEEECccCceeeeeecC-CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-ee
Q 012996            1 MELLIASSSVADTG-IGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KS   77 (451)
Q Consensus         1 ~e~~l~s~~~~dg~-i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~   77 (451)
                      ||..+++.++.|.. +.+||+.||....+|++. .....+...+.      +.+++++...-..|.+|.+....... ..
T Consensus         5 le~~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q~~   78 (476)
T KOG0646|consen    5 LEGTVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQYI   78 (476)
T ss_pred             eeEEEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhhhc
Confidence            67777776656655 999999999999999887 33444444433      46666665554799999998766554 45


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      ..+++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|...|+|+.|+.||.+|+|||.||.|.+|.+......
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            56789999999999999999989999999999999999999999999999999999999999999999999998664333


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (451)
                      ...  ....+.+.+..|+.+|+++...+.+.+.+++|++.|.++++||+..+..+.++..+..+.+++++|.+..+++|+
T Consensus       159 ~~~--~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  159 DND--HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             ccC--CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence            222  256678899999999999999998777899999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCCCC-------CCCceeeeeeccCCc--ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          238 RDGSIYIAALNAESPSTS-------SYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~--~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      .+|.|.+.++........       ......+..+.+|.+  +|+|++++- |.+|++|+.||+|+|||+.+.++++++.
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            999999998876542111       122344667889988  999999999 9999999999999999999999999998


Q ss_pred             cCCCCeeEEEEEecCceeeecc-CCCCccccccCCCCCCC---ccccccccccccccceeEEecCCCCCCCCCCcccchh
Q 012996          308 LAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGSQLPP---PLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHR  383 (451)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (451)
                      ...++|+.+.+.|-.+-...+. ....+..|.... .+++   ...++-+.............+++........+..-..
T Consensus       317 ~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr-~i~~~~~~d~~~~~~v~~~~~~~~q~~pps~sd~~l~l~a~~~s  395 (476)
T KOG0646|consen  317 TSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR-MIPNLERVDEKYKNGVHLHDIGYQQLEPPSESDPILQLSANDFS  395 (476)
T ss_pred             hhccccceeEeeccccceecccccCccCCchHhhc-cCCccccccccccCCceecccCEEeccCCcccCcceeecccccc
Confidence            7789999999987544444432 223344444332 2222   1111111111111111122222222222222222222


Q ss_pred             hHHHHHHHhhhcC--------------------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 012996          384 TIENHIKELQQQG--------------------SSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELLDG  440 (451)
Q Consensus       384 ~~~~~~~~l~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  440 (451)
                      ..++...+.+++.                    ...+.+.+.+++++++++..++..++.+...++++.+.++..+.
T Consensus       396 ~~~e~v~~~~ae~~~~~~~~s~v~e~d~~~~~~~s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee~~~~  472 (476)
T KOG0646|consen  396 AYEEQVKEQEAETSHIGKVSSNVKEIDNKIDATRSLELEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEEHQQM  472 (476)
T ss_pred             chhhhhhhhhhhhhccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            2334444433331                    12345677788999999999999999999999998877776544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.5e-45  Score=292.76  Aligned_cols=281  Identities=21%  Similarity=0.373  Sum_probs=252.9

Q ss_pred             CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-CceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      ..+|.+.|.++.  |+++++++++++.| |.+.|||.-+ .+......+...|..++|+|.|+++|+|+-|+...||++.
T Consensus        51 LkGH~~Ki~~~~--ws~Dsr~ivSaSqD-GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   51 LKGHLNKIYAMD--WSTDSRRIVSASQD-GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             ecccccceeeeE--ecCCcCeEEeeccC-CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            345778899988  99999999999999 9999999764 4555566678899999999999999999999999999998


Q ss_pred             CC------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          111 SG------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       111 ~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      +.      ...+.+.+|.+.+.|+.|.+| .+|+|++.|.+..+||+++           .+.+..|.+|.+.|.++.++
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~-----------g~~~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET-----------GQQTQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc-----------ceEEEEecCCcccEEEEecC
Confidence            55      345678999999999999875 5699999999999999954           66788899999999999999


Q ss_pred             e-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996          185 Y-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (451)
Q Consensus       185 ~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (451)
                      | ++  +.+++|+.|+..++||++.+...+.|. |.+.|+++.|.|+|.-|++|+.|+..++||++...         .+
T Consensus       196 p~~~--ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---------~~  264 (343)
T KOG0286|consen  196 PSDG--NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---------EL  264 (343)
T ss_pred             CCCC--CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc---------EE
Confidence            9 55  899999999999999999999999998 89999999999999999999999999999999863         23


Q ss_pred             eeec--cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          263 GSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       263 ~~~~--~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ..+.  ....+|++++||. |++|++|..|.++.+||.-.++.+..+.+|.+.|++|..+|||.-|++||.|..++||.
T Consensus       265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            3332  3346899999999 99999999999999999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.4e-46  Score=310.17  Aligned_cols=265  Identities=20%  Similarity=0.319  Sum_probs=243.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeec--cCcccCCCCCCccEEEEECCCCcee-eeecC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVE-VKSLP   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~   79 (451)
                      ..||||+ .+|.++||+..++..+.+|.+|.+.   +.++.  |+|.  +..+|+++.| |++++|++++.... ....|
T Consensus       188 ~~laT~s-wsG~~kvW~~~~~~~~~~l~gH~~~---v~~~~--fhP~~~~~~lat~s~D-gtvklw~~~~e~~l~~l~gH  260 (459)
T KOG0272|consen  188 KHLATGS-WSGLVKVWSVPQCNLLQTLRGHTSR---VGAAV--FHPVDSDLNLATASAD-GTVKLWKLSQETPLQDLEGH  260 (459)
T ss_pred             CeEEEee-cCCceeEeecCCcceeEEEeccccc---eeeEE--EccCCCccceeeeccC-CceeeeccCCCcchhhhhcc
Confidence            4689999 9999999999999999999876654   55555  9997  5688999998 99999999985544 44568


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||.+++|||.|..-+|||+++      
T Consensus       261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt------  334 (459)
T KOG0272|consen  261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT------  334 (459)
T ss_pred             hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc------
Confidence            89999999999999999999999999999999999989999999999999999999999999999999999976      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC-CCCEEEEEe
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGS  237 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~  237 (451)
                           ..++..+.+|..+|.++.|+|+|  ..++||+.|++++|||++..+.+..+. |.+-|+.+.|+| .|.+|++++
T Consensus       335 -----gr~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  335 -----GRCIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             -----CcEEEEecccccceeeEeECCCc--eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence                 45677889999999999999999  899999999999999999999988887 889999999999 889999999


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      .|+++++|...+.         .++..+.||.+.|.++.+++ +.++++++.|.++++|.
T Consensus       408 yD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  408 YDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCcceeeecCCCc---------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999998885         67889999999999999999 99999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.1e-43  Score=273.68  Aligned_cols=275  Identities=16%  Similarity=0.259  Sum_probs=242.3

Q ss_pred             CcccCCCCCCccEEEEECCCCceeeeecC-CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeE
Q 012996           51 QLREQPSASSGSILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTC  127 (451)
Q Consensus        51 ~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~  127 (451)
                      -+|+++|.| .+|++|...++.+.....| ...|+.+.+.|+++.||+++. ..|++||+++++  ++.++.+|...|++
T Consensus        11 viLvsA~YD-hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   11 VILVSAGYD-HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             eEEEeccCc-ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence            467788888 9999999999999877766 568999999999999999876 479999999875  58899999999999


Q ss_pred             EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996          128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (451)
Q Consensus       128 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~  207 (451)
                      +.|..+|+++++|++||+++|||++.           . .......|..+|+++..+|+.  ..|++|..+|.|++||+.
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~-----------~-~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRS-----------L-SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLG  154 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccC-----------c-ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEcc
Confidence            99999999999999999999999965           1 223344578999999999998  799999999999999999


Q ss_pred             CCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEE
Q 012996          208 KGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI  284 (451)
Q Consensus       208 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~  284 (451)
                      ...+...+.  ....|.++.+.|+|.+++.+...|..++|++-...   ......++..++.|.+.+..+.+|| +++|+
T Consensus       155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEEECCCCcEEE
Confidence            887666554  45789999999999999999999999999998742   2223467788999999999999999 99999


Q ss_pred             EEcCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          285 SGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       285 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      ++|.|.+++||+.++. +.-..+.+|...+++.+||.||+||++|+.|+.+++|+...++.
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE  292 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence            9999999999999988 66667889999999999999999999999999999999886653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.6e-42  Score=269.38  Aligned_cols=287  Identities=18%  Similarity=0.305  Sum_probs=247.8

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce---eeeecC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLP   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~---~~~~~~   79 (451)
                      ++||+++ .|.+|++|...+|.+.++++...++++.+.     ..|+++.||+++.  ..|++||+++...   .....|
T Consensus        11 viLvsA~-YDhTIRfWqa~tG~C~rTiqh~dsqVNrLe-----iTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   11 VILVSAG-YDHTIRFWQALTGICSRTIQHPDSQVNRLE-----ITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eEEEecc-CcceeeeeehhcCeEEEEEecCccceeeEE-----EcCCcchhhhccC--CeeEEEEccCCCCCceeEEecc
Confidence            7899999 999999999999999999987666655544     8999999999998  6999999987654   233457


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...|+++.|..+|+++++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+      
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~------  155 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE------  155 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccC------
Confidence            8999999999999999999999999999999977666665 779999999999999999999999999999965      


Q ss_pred             hhcccccceec-ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc------eeeeee-cccceeEEEECCCCC
Q 012996          160 SQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------LLRNIV-FPSVIDAIALDPAEH  231 (451)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~-~~~~i~~~~~~~~~~  231 (451)
                           ..+... ...-..+|.++.+.++|  .+++.+...|.+++|++-+..      ++..++ |.+.+..+.+||+++
T Consensus       156 -----~~c~~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  156 -----NSCTHELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             -----CccccccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence                 212222 23345689999999999  899999999999999987653      334444 788999999999999


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                      +|++++.|.+++||+..+.-        +.-..+.+|...+...+||. +.||++|+.|+.+++||+..++.++...+|.
T Consensus       229 ~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  229 YLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             EEEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            99999999999999998752        55667889999999999999 9999999999999999999999999999998


Q ss_pred             CCeeEEEEE
Q 012996          311 GPVNNILVV  319 (451)
Q Consensus       311 ~~v~~l~~s  319 (451)
                      .+..+++..
T Consensus       301 K~~vc~~ln  309 (311)
T KOG0315|consen  301 KAAVCVALN  309 (311)
T ss_pred             cccEEEEee
Confidence            877777654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-42  Score=309.28  Aligned_cols=327  Identities=22%  Similarity=0.323  Sum_probs=269.6

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCc--ccCCCCCCccEEEEECCCCce--eeeec
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--REQPSASSGSILYWSWSKPQV--EVKSL   78 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~d~g~i~vw~~~~~~~--~~~~~   78 (451)
                      .+||+|+ .||.++|||+..+.+...|++|.   +.|..+.  |.|+-.+  |++++.| +.+++||+.....  .....
T Consensus       118 ~LlAtgg-aD~~v~VWdi~~~~~th~fkG~g---GvVssl~--F~~~~~~~lL~sg~~D-~~v~vwnl~~~~tcl~~~~~  190 (775)
T KOG0319|consen  118 TLLATGG-ADGRVKVWDIKNGYCTHSFKGHG---GVVSSLL--FHPHWNRWLLASGATD-GTVRVWNLNDKRTCLHTMIL  190 (775)
T ss_pred             ceEEecc-ccceEEEEEeeCCEEEEEecCCC---ceEEEEE--eCCccchhheeecCCC-ceEEEEEcccCchHHHHHHh
Confidence            5789999 99999999999999999998755   5566666  8887655  5555555 9999999985544  23345


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-----------------------------------------
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-----------------------------------------  117 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------------------  117 (451)
                      |...|++++|++|+..+++++.|..+.|||+.+.+.+.+                                         
T Consensus       191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~  270 (775)
T KOG0319|consen  191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG  270 (775)
T ss_pred             hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence            888999999999988888888888888888632110000                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 012996          118 --------------------------------------------------------------------------------  117 (451)
Q Consensus       118 --------------------------------------------------------------------------------  117 (451)
                                                                                                      
T Consensus       271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence                                                                                            


Q ss_pred             ----------eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996          118 ----------WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (451)
Q Consensus       118 ----------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (451)
                                +.+|...|.++....+|-+|+||+.|.++++|.+.+.       .....++....+|...|.+++++..+
T Consensus       351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~-------~~~~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-------CSKSLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC-------cchhhhhhhhcccccccceeeecccC
Confidence                      0157777777775556778899999999999987331       12334566778999999999997766


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCcee---ee-------eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRLL---RN-------IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~~---~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      . .+|+++|.|+++++|++...+..   ..       ..|...|++++++|+.+++++|+.|.+.++|++...       
T Consensus       424 a-sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------  495 (775)
T KOG0319|consen  424 A-SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------  495 (775)
T ss_pred             c-cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------
Confidence            5 89999999999999999762211   11       127889999999999999999999999999999954       


Q ss_pred             CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                        ....++.+|...|.++.|+| ...++|+|.|++|+||.+.++.++++|.+|...|..+.|-.+|..|++++.||.+++
T Consensus       496 --~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl  573 (775)
T KOG0319|consen  496 --RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL  573 (775)
T ss_pred             --eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence              77899999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCccccccc
Q 012996          337 SRRHGSQLPPPLDKYVT  353 (451)
Q Consensus       337 w~~~~~~~~~~~~~~~~  353 (451)
                      |++++..+...++.+-.
T Consensus       574 Wnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  574 WNIKTNECEMTLDAHND  590 (775)
T ss_pred             Eeccchhhhhhhhhccc
Confidence            99999999888876643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-42  Score=271.64  Aligned_cols=284  Identities=18%  Similarity=0.313  Sum_probs=239.1

Q ss_pred             CCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996           34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  106 (451)
                      +|...|..++  ..+.+ ..+.+++.| .++.+|++.....      .....|...|..+..++||++.++++.|+.+++
T Consensus        13 gh~d~Vt~la--~~~~~~~~l~sasrD-k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   13 GHTDWVTALA--IKIKNSDILVSASRD-KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             CCCceEEEEE--eecCCCceEEEcccc-eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence            4667788777  66664 455566666 9999999875432      233458899999999999999999999999999


Q ss_pred             EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      ||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++..          .......-..+...|.+++|+|+
T Consensus        90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g----------~ck~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG----------VCKYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc----------cEEEEEecCCCcCcEEEEEEcCC
Confidence            99999999999999999999999999999999999999999999843          12222222234789999999999


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      ..+.+|++++.|++|++||+++.+....+. |.+.++.++++|||...++|+.||.+.+||++..+         .+. .
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k---------~ly-s  229 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK---------NLY-S  229 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc---------eeE-e
Confidence            766899999999999999999998888777 88999999999999999999999999999999874         233 3


Q ss_pred             ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC---------CCCeeEEEEEecCceeeeccCCCCccc
Q 012996          266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA---------KGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                      .+|...|.+++|+|.++.+++..+..|+|||+.++.++.+++..         .-....++|++||..|++|-.|+.|++
T Consensus       230 l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv  309 (315)
T KOG0279|consen  230 LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV  309 (315)
T ss_pred             ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence            46889999999999777667777777999999999988876521         123567899999999999999999999


Q ss_pred             cccC
Q 012996          337 SRRH  340 (451)
Q Consensus       337 w~~~  340 (451)
                      |.+.
T Consensus       310 ~qv~  313 (315)
T KOG0279|consen  310 WQVA  313 (315)
T ss_pred             EEee
Confidence            9864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.9e-44  Score=297.33  Aligned_cols=279  Identities=20%  Similarity=0.299  Sum_probs=246.9

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  115 (451)
                      ..|..+.  |.|+|+.|++|+.. |.+.+|+...-... +...|..+|+++.|++++.++++|..+|.|++|+..-....
T Consensus        97 c~V~~v~--WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk  173 (464)
T KOG0284|consen   97 CPVNVVR--WTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK  173 (464)
T ss_pred             cceeeEE--EcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence            3456666  99999999999998 99999997543332 44568999999999999999999999999999997554443


Q ss_pred             eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (451)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~  195 (451)
                      .....|...|++++|+|++..|++++.||+|+|||...           ......+.+|.-.|.+++|+|..  .+++++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-----------~kee~vL~GHgwdVksvdWHP~k--gLiasg  240 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-----------PKEERVLRGHGWDVKSVDWHPTK--GLIASG  240 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-----------CchhheeccCCCCcceeccCCcc--ceeEEc
Confidence            33344559999999999999999999999999999954           33445679999999999999988  899999


Q ss_pred             eCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996          196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (451)
Q Consensus       196 ~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  274 (451)
                      +.|..|++||.++++++.++. |...|..+.|+|++++|++++.|..+++||+++.         +.+..+++|...|++
T Consensus       241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVTS  311 (464)
T ss_pred             cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhhee
Confidence            999999999999999999887 8899999999999999999999999999999964         567889999999999


Q ss_pred             EEEec--CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          275 LAYST--GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       275 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +.|+|  .++|.+|+.||.|..|.+...+++..+. +|.+.|++++|+|-|..|++|+.|.++++|...
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99999  8999999999999999998777777665 789999999999999999999999999999865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.9e-41  Score=288.09  Aligned_cols=310  Identities=22%  Similarity=0.373  Sum_probs=274.1

Q ss_pred             EEEeecCCCCCCeEEEECcc----CceeeeeecC------C-CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC
Q 012996            3 LLIASSSVADTGIGCWDLES----GAEQLRYKSC------A-SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP   71 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~----~~~~~~~~~~------~-~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~   71 (451)
                      -++|+++ .|-+.++|++..    +.....++..      . .....|++++  |+.+|..||+|..+ |.+++|+....
T Consensus       192 ~llasg~-~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~--Wn~~G~~LatG~~~-G~~riw~~~G~  267 (524)
T KOG0273|consen  192 GLLASGS-GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLD--WNNDGTLLATGSED-GEARIWNKDGN  267 (524)
T ss_pred             hhhhccC-CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEE--ecCCCCeEEEeecC-cEEEEEecCch
Confidence            3678888 999999999874    1111112111      1 1236799999  99999999999999 99999999988


Q ss_pred             ceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996           72 QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        72 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      .......|.++|.++.|+.+|+||++++.|+++.+||..+++....+.-|..+-.++.|-.+ ..|++++.||.|+|+.+
T Consensus       268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv  346 (524)
T KOG0273|consen  268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKV  346 (524)
T ss_pred             hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEe
Confidence            88888889999999999999999999999999999999999999999999988788999765 45899999999999999


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE  230 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~  230 (451)
                                 ....++.++.+|.+.|.++.|.|.+  .+|++++.|++++||..........+. |...|..+.|+|.+
T Consensus       347 -----------~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g  413 (524)
T KOG0273|consen  347 -----------GEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG  413 (524)
T ss_pred             -----------cCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence                       5567888999999999999999998  899999999999999998888887777 88899999999854


Q ss_pred             ---------CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996          231 ---------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       231 ---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~  300 (451)
                               ..+++++.|+.|++||+..+         .++..+..|..+|++++|+| +.++|+|+.||.|.+|++.++
T Consensus       414 ~v~~n~~~~~~l~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  414 PVTSNPNMNLMLASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             CccCCCcCCceEEEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence                     57899999999999999987         66888999999999999999 999999999999999999999


Q ss_pred             ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +.++...+ .+.|..|+|+.+|.+|..+-.||.+++-+++
T Consensus       485 ~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  485 KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999987 5679999999999999999999999887753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.4e-41  Score=287.50  Aligned_cols=287  Identities=19%  Similarity=0.332  Sum_probs=252.0

Q ss_pred             CCCceEEecceEeeccC-cccCCCCCCccEEEEECCC------Cceeee---------ecCCCCeeEEEECCCCcEEEEe
Q 012996           35 PPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSK------PQVEVK---------SLPAEPIKPIAANSHGTYIAGG   98 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~------~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~   98 (451)
                      |...|.+.+  |.|... .+++++.+ -+.++|++..      .+..++         ......|++++|+.+|..||+|
T Consensus       177 ~~~~V~~~~--WnP~~~~llasg~~~-s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG  253 (524)
T KOG0273|consen  177 HESEVFICA--WNPLRDGLLASGSGD-STARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG  253 (524)
T ss_pred             CCCceEEEe--cCchhhhhhhccCCc-cceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence            667789999  999888 77777777 9999999864      111111         1124689999999999999999


Q ss_pred             ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996           99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus        99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      +.||.+++|+ .+|.++.++..|.++|.++.|+..|.+|++++.|+++.+||..+           ......+.-|..+-
T Consensus       254 ~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-----------g~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  254 SEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-----------GTVKQQFEFHSAPA  321 (524)
T ss_pred             ecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-----------ceEEEeeeeccCCc
Confidence            9999999999 57889999999999999999999999999999999999999944           44566677788886


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      .++.|-.+   ..+++++.|+.|+++.+....++.++. |.+.|.++.|+|.+.+|++++.|++++||.....       
T Consensus       322 lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-------  391 (524)
T KOG0273|consen  322 LDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-------  391 (524)
T ss_pred             cceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-------
Confidence            77888766   589999999999999999989988887 8999999999999999999999999999998775       


Q ss_pred             CceeeeeeccCCcceeEEEEec-C---------CEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST-G---------DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~-~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (451)
                        .....+.+|...|+.+.|+| +         ..+++++.|++|++||+..+.++.+|..|..||.+++|+|+|+|+|+
T Consensus       392 --~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  392 --NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             --cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence              45668889999999999988 4         37999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccccccCCCCCCCcc
Q 012996          328 GSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       328 ~s~d~~i~iw~~~~~~~~~~~  348 (451)
                      |+.||.|.+|+.+...+....
T Consensus       470 Gs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  470 GSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             cCCCCeeEeccccchheeEee
Confidence            999999999999977665543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.3e-40  Score=285.26  Aligned_cols=324  Identities=19%  Similarity=0.297  Sum_probs=252.0

Q ss_pred             EEEeecCCCCCCeEEEECccCcee--eeeecCCCCCCceEEecceEeeccCcccCCCCCC---ccEEEEECCC-------
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQ--LRYKSCASPPHGLACVGQRFLASSQLREQPSASS---GSILYWSWSK-------   70 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---g~i~vw~~~~-------   70 (451)
                      .++|+|. ..|.|||||....+.+  .+++...++   |..++  |+.+++.+++.|..-   |.+.+||..+       
T Consensus        72 ~yiASGD-~sG~vRIWdtt~~~hiLKnef~v~aG~---I~Di~--Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G  145 (603)
T KOG0318|consen   72 FYIASGD-VSGKVRIWDTTQKEHILKNEFQVLAGP---IKDIS--WDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG  145 (603)
T ss_pred             eEEeecC-CcCcEEEEeccCcceeeeeeeeecccc---cccce--eCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence            4899999 9999999997653332  234433333   33444  666666666655421   3455555321       


Q ss_pred             ----------------------------------Cceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996           71 ----------------------------------PQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (451)
Q Consensus        71 ----------------------------------~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  115 (451)
                                                        -+... ...|..-|.|+.|+|||.++|+++.||.|.+||-.+|+.+
T Consensus       146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v  225 (603)
T KOG0318|consen  146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV  225 (603)
T ss_pred             cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence                                              11111 1126678999999999999999999999999999999999


Q ss_pred             eeec---cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh--------------------------------
Q 012996          116 KKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES--------------------------------  160 (451)
Q Consensus       116 ~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------------------  160 (451)
                      ..+.   +|.+.|.+++|+||++.|+|++.|.+++|||+.+.......                                
T Consensus       226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l  305 (603)
T KOG0318|consen  226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL  305 (603)
T ss_pred             EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence            9997   89999999999999999999999999999999764321110                                


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-----------ee-cc----------
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-----------IV-FP----------  218 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~-~~----------  218 (451)
                      .......+..+.+|...|+++..++++  .+|++|+.||.|.-||..++..-+.           +. ..          
T Consensus       306 n~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D  383 (603)
T KOG0318|consen  306 NPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD  383 (603)
T ss_pred             cccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence            012223567788999999999999998  8999999999999999865432211           00 00          


Q ss_pred             ------------------------------------------------------------cceeEEEECCCCCEEEEEeC
Q 012996          219 ------------------------------------------------------------SVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       219 ------------------------------------------------------------~~i~~~~~~~~~~~l~~~~~  238 (451)
                                                                                  ....+++++|++..+++|+.
T Consensus       384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~  463 (603)
T KOG0318|consen  384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ  463 (603)
T ss_pred             CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence                                                                        03567899999999999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE-EeecCCCCeeEE
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-MFRLAKGPVNNI  316 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l  316 (451)
                      ||.+++|.+.....       ........|.++|+++++|| +.+||+|...+.+.+||+.+.+... .+..|.+.|.++
T Consensus       464 Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  464 DGKVHVYSLSGDEL-------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV  536 (603)
T ss_pred             cceEEEEEecCCcc-------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence            99999999988642       23345667999999999999 9999999999999999999887633 345699999999


Q ss_pred             EEEecCceeeeccCCCCccccccCC
Q 012996          317 LVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       317 ~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +|+|+..++|+||.|..|.||++..
T Consensus       537 aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  537 AWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             EeCCCceEEEeccccceEEEEEccC
Confidence            9999999999999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-40  Score=266.52  Aligned_cols=264  Identities=20%  Similarity=0.323  Sum_probs=238.3

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC--c-----eee
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--Q-----VEV   75 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~-----~~~   75 (451)
                      ..|++++ .||.+.|||.-|...+..+..   +...|..++  |+|.|+++|+||.| +...||++.+.  +     ...
T Consensus        68 r~ivSaS-qDGklIvWDs~TtnK~haipl---~s~WVMtCA--~sPSg~~VAcGGLd-N~Csiy~ls~~d~~g~~~v~r~  140 (343)
T KOG0286|consen   68 RRIVSAS-QDGKLIVWDSFTTNKVHAIPL---PSSWVMTCA--YSPSGNFVACGGLD-NKCSIYPLSTRDAEGNVRVSRE  140 (343)
T ss_pred             CeEEeec-cCCeEEEEEcccccceeEEec---CceeEEEEE--ECCCCCeEEecCcC-ceeEEEecccccccccceeeee
Confidence            4688999 999999999998888877754   446677777  99999999999999 99999999854  2     123


Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcch
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~  154 (451)
                      ...|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++. 
T Consensus       141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-  218 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-  218 (343)
T ss_pred             ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-
Confidence            456899999999988 45688999999999999999999999999999999999999 999999999999999999954 


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCC
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEH  231 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~  231 (451)
                                ..+.++|.+|...|++++|.|+|  .-+++|+.|+++++||++..+.+..+.+   ..+|++++|+..|+
T Consensus       219 ----------~~c~qtF~ghesDINsv~ffP~G--~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR  286 (343)
T KOG0286|consen  219 ----------GQCVQTFEGHESDINSVRFFPSG--DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR  286 (343)
T ss_pred             ----------cceeEeecccccccceEEEccCC--CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence                      56889999999999999999999  8999999999999999999999888875   45799999999999


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      +|++|..|..+.+||.-.+         +.+..+.+|...|+++..+| |.-+++|+.|.+++||.
T Consensus       287 lLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  287 LLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999998776         55778999999999999999 99999999999999994

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-39  Score=268.80  Aligned_cols=308  Identities=21%  Similarity=0.307  Sum_probs=265.3

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~   81 (451)
                      .++|||+ .|..-.||++.+|.....+.   +|...|+++.  |+.+|.+||+|+.+ |.|+||...++....... .-+
T Consensus        77 ~l~aTGG-gDD~AflW~~~~ge~~~elt---gHKDSVt~~~--FshdgtlLATGdms-G~v~v~~~stg~~~~~~~~e~~  149 (399)
T KOG0296|consen   77 NLVATGG-GDDLAFLWDISTGEFAGELT---GHKDSVTCCS--FSHDGTLLATGDMS-GKVLVFKVSTGGEQWKLDQEVE  149 (399)
T ss_pred             ceEEecC-CCceEEEEEccCCcceeEec---CCCCceEEEE--EccCceEEEecCCC-ccEEEEEcccCceEEEeecccC
Confidence            4789999 99999999999999877665   4668899999  99999999999999 999999999888776654 567


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .+.-+.|+|.+..|+.|+.||.+.+|.+.+....+.+.+|..++++-.|.|+|+.++++..||+|++|++.++       
T Consensus       150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-------  222 (399)
T KOG0296|consen  150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-------  222 (399)
T ss_pred             ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-------
Confidence            8889999999999999999999999999998888999999999999999999999999999999999999663       


Q ss_pred             cccccceecccC-CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---------cccc---eeEEEECC
Q 012996          162 RASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSV---IDAIALDP  228 (451)
Q Consensus       162 ~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~---i~~~~~~~  228 (451)
                          .+++.... ......++.++..+  ..++.|+.++.+++-+..+++.+...+         +...   |.++.++.
T Consensus       223 ----~p~~~~~~~e~~~~~~~~~~~~~--~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss  296 (399)
T KOG0296|consen  223 ----QPLHKITQAEGLELPCISLNLAG--STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS  296 (399)
T ss_pred             ----ceeEEecccccCcCCcccccccc--ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence                33333331 23445677777776  789999999999999988888776654         2233   44444555


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  308 (451)
                      .=.+.|+|+-||+|.|||+....          ++....|..+|+.+.|-+..+|++++.||.|+.||.++|+++.++.+
T Consensus       297 ~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  297 KLPLAACGSVDGTIAIYDLAAST----------LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             ccchhhcccccceEEEEecccch----------hheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence            66788999999999999998854          44556788999999999878999999999999999999999999999


Q ss_pred             CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |..+|.+++.+|+.++++|+|.|++.+++++.
T Consensus       367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999998754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-39  Score=290.53  Aligned_cols=316  Identities=20%  Similarity=0.319  Sum_probs=270.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+||+|- ..|...+|.+..-..++.+....   ..|..+.  |+..|.++|.++..=|.+.||++.......+ ..|..
T Consensus       278 ~~lvvgF-ssG~f~LyelP~f~lih~LSis~---~~I~t~~--~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~  351 (893)
T KOG0291|consen  278 NLLVVGF-SSGEFGLYELPDFNLIHSLSISD---QKILTVS--FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD  351 (893)
T ss_pred             eEEEEEe-cCCeeEEEecCCceEEEEeeccc---ceeeEEE--ecccCCEEEEcCCccceEEEEEeeccceeeecccccc
Confidence            5789999 99999999999999998886543   5566666  9999999999988668999999998887665 45889


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .+++++++|||+++|+|+.||.|+|||..++-|..+|..|...|+.+.|+..++.+++++.||+|+.||+..        
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR--------  423 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR--------  423 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999943        


Q ss_pred             cccccceecccCC-cCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996          162 RASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       162 ~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                         ....+++... +....+++..|.|  .+++.|+.|. .|.+|++.+|+.+..+. |.++|.+++|+|.+..|++++.
T Consensus       424 ---YrNfRTft~P~p~QfscvavD~sG--elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  424 ---YRNFRTFTSPEPIQFSCVAVDPSG--ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             ---cceeeeecCCCceeeeEEEEcCCC--CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence               4445555432 3345666776766  7888888876 59999999999999988 9999999999999999999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---------
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---------  308 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------  308 (451)
                      |.+|++||+-...        ..+.++ .+...+..++|+| |.-|+++..||.|.+||+..+..+..+.+         
T Consensus       499 DkTVRiW~if~s~--------~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~  569 (893)
T KOG0291|consen  499 DKTVRIWDIFSSS--------GTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK  569 (893)
T ss_pred             cceEEEEEeeccC--------ceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence            9999999997753        122233 4678899999999 99999999999999999987766544431         


Q ss_pred             -----------CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          309 -----------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       309 -----------~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                                 ...+.+.+++|+||.++++|+..+.|++|++..+.+.+
T Consensus       570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence                       22479999999999999999999999999998776543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-39  Score=257.41  Aligned_cols=272  Identities=22%  Similarity=0.370  Sum_probs=226.1

Q ss_pred             EEeecCCCCCCeEEEECc-----cCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-ee
Q 012996            4 LIASSSVADTGIGCWDLE-----SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~   77 (451)
                      ++.+++ .|.++.+|++.     .|..++.+.+   |.+.|..+.  .+++|++.++++.| +++++||+.+++... ..
T Consensus        30 ~l~sas-rDk~ii~W~L~~dd~~~G~~~r~~~G---HsH~v~dv~--~s~dg~~alS~swD-~~lrlWDl~~g~~t~~f~  102 (315)
T KOG0279|consen   30 ILVSAS-RDKTIIVWKLTSDDIKYGVPVRRLTG---HSHFVSDVV--LSSDGNFALSASWD-GTLRLWDLATGESTRRFV  102 (315)
T ss_pred             eEEEcc-cceEEEEEEeccCccccCceeeeeec---cceEecceE--EccCCceEEecccc-ceEEEEEecCCcEEEEEE
Confidence            577888 99999999875     5666777766   556677777  99999999999999 999999999876554 45


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc--cCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcc
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSED--GSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .|...|.+++|+||.+.+++|+.|.+|++|++. +.+..++..+  .+.|+|+.|+|+  ..+|++++.|++|++||++ 
T Consensus       103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-  180 (315)
T KOG0279|consen  103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-  180 (315)
T ss_pred             ecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-
Confidence            699999999999999999999999999999975 4555555433  789999999997  7899999999999999994 


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (451)
                                ..+....+.+|++.++.++++|+|  .++++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|
T Consensus       181 ----------~~~l~~~~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  181 ----------NCQLRTTFIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWL  248 (315)
T ss_pred             ----------CcchhhccccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeE
Confidence                      466778899999999999999999  89999999999999999999999999999999999999998888


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeee-eeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      +.+... .|+|||+.+........ ..... ..........+++|++ |..|++|..|+.|++|.+.
T Consensus       249 ~~at~~-sIkIwdl~~~~~v~~l~-~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  249 CAATAT-SIKIWDLESKAVVEELK-LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eeccCC-ceEEEeccchhhhhhcc-ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            777654 49999998865322110 01111 1222234556789999 9999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.8e-40  Score=295.34  Aligned_cols=268  Identities=22%  Similarity=0.417  Sum_probs=238.5

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--------------------------------eeeeecCCCCe
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------------------------------VEVKSLPAEPI   83 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------------------------------~~~~~~~~~~v   83 (451)
                      ...+.|..  |++++..+|.|-.| ..|++|.+...+                                ......|.++|
T Consensus       378 ~~~v~ca~--fSddssmlA~Gf~d-S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  378 YQGVTCAE--FSDDSSMLACGFVD-SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             CCcceeEe--ecCCcchhhccccc-cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            36688888  99999988887777 999999887311                                11234589999


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      ..+.|+|+.++|++++.|+++++|.+.+..++..+++|..+|+++.|+|.|-+|+|++.|++.++|..           .
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~-----------d  523 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST-----------D  523 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec-----------c
Confidence            99999999999999999999999999999999999999999999999999999999999999999998           4


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI  242 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (451)
                      ...+++.+.+|-..|.|+.|+|+.  +++++||.|.+|++||+.+|..++.|. |.++|.+++|+|+|++|++|+.||.|
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             cCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            567888999999999999999999  899999999999999999999999998 99999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc--------------------
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN--------------------  301 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--------------------  301 (451)
                      .+||+.++         ..+..+.+|.+.|+++.|+. |..||+|+.|.+|++||+..-.                    
T Consensus       602 ~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~  672 (707)
T KOG0263|consen  602 KIWDLANG---------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN  672 (707)
T ss_pred             EEEEcCCC---------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence            99999997         55778999999999999999 9999999999999999975422                    


Q ss_pred             ----eEEEeecCCCCeeEEEEEecCceeeec
Q 012996          302 ----IVRMFRLAKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       302 ----~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (451)
                          ++..+.....+|.+|.|...+..|+.|
T Consensus       673 ~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  673 ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                344555556688888888877666655

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.5e-40  Score=269.22  Aligned_cols=284  Identities=19%  Similarity=0.366  Sum_probs=256.0

Q ss_pred             CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      ..+|-+.|.|++  +-|...++++++.| ++++|||+.++++.... .|-+.|..+++|+-..|+++++.|+.|+.||+.
T Consensus       147 i~gHlgWVr~va--vdP~n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  147 ISGHLGWVRSVA--VDPGNEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhccceEEEEe--eCCCceeEEecCCC-ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            346778999999  99999999999999 99999999999987664 488999999999999999999999999999999


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      ..+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++           ...+..+.+|..+|.++.+.+..  .
T Consensus       224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-----------r~~V~~l~GH~~~V~~V~~~~~d--p  290 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-----------RASVHVLSGHTNPVASVMCQPTD--P  290 (460)
T ss_pred             hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-----------cceEEEecCCCCcceeEEeecCC--C
Confidence            9999999999999999999999989999999999999999966           55688999999999999998766  6


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      .+++|+.|++|++||++.|+....+. |...+.+++.+|....|++++.| .|+.|++..+         ..+..+.+|.
T Consensus       291 qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~  360 (460)
T KOG0285|consen  291 QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHN  360 (460)
T ss_pred             ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc---------chhhcccccc
Confidence            89999999999999999998887776 78899999999999999998876 4899999887         4456688999


Q ss_pred             cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec--------CCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          270 KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL--------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       270 ~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ..|++++.+...++++|+.+|.+.+||.++|...+.+..        ....|.+.+|...|..|++|..|.+|++|+-..
T Consensus       361 ~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  361 AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            999999998889999999999999999999876665421        234689999999999999999999999998653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.7e-40  Score=299.88  Aligned_cols=242  Identities=25%  Similarity=0.386  Sum_probs=223.9

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-------------------------------cceeeeccccCCeeEE
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-------------------------------RLLKKWHAHYRAVTCL  128 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------------------~~~~~~~~~~~~v~~~  128 (451)
                      ...++|..|++|+++||.|..|..|++|.+...                               ....++.+|.++|...
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            568999999999999999999999999988631                               1123466899999999


Q ss_pred             EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996          129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (451)
Q Consensus       129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~  208 (451)
                      .|+|+.++|++++.|+++++|.+.+           ..++..+.+|..+|+.+.|+|.|  -+++|++.|++.++|....
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t-----------~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDT-----------WSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDH  524 (707)
T ss_pred             eecccccceeeccCCcceeeeeccc-----------ceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeeccc
Confidence            9999999999999999999999954           66777888999999999999988  8999999999999999999


Q ss_pred             Cceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE
Q 012996          209 GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (451)
Q Consensus       209 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~  286 (451)
                      ..+.+.+. |-+.+.|+.|+|+..|+++|+.|.++++||..++         ..+..+.||.++|++++||| |.+|++|
T Consensus       525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCCceEeec
Confidence            99988887 8899999999999999999999999999999998         45888999999999999999 9999999


Q ss_pred             cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          287 SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +.||.|.+||+.++.++..+.+|.+.|.++.||.||..||+|+.|+.|++||+....
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            999999999999999999999999999999999999999999999999999987543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.8e-40  Score=270.04  Aligned_cols=281  Identities=21%  Similarity=0.326  Sum_probs=256.4

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-  111 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-  111 (451)
                      ++...|+.+-  |+|+-...++++.| ++|++||..++++.. ...|.+.|..|+|+..|+++++++.|=.+++||..+ 
T Consensus       106 g~r~~vt~v~--~hp~~~~v~~as~d-~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  106 GHRSSVTRVI--FHPSEALVVSASED-ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             ccccceeeee--eccCceEEEEecCC-ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence            3556677777  99999999988888 999999999998743 356888899999999999999999998899999876 


Q ss_pred             CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  191 (451)
                      .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+           .-++.++.+|...|..++.+.+|  .+
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t-----------g~cv~t~~~h~ewvr~v~v~~DG--ti  249 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT-----------GYCVKTFPGHSEWVRMVRVNQDG--TI  249 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc-----------ceeEEeccCchHhEEEEEecCCe--eE
Confidence            577888899999999999999999999999999999999955           56789999999999999988888  89


Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCC---------------CCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA---------------EHVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                      +++++.|.++++|-+.++++...+. |..+|.+++|.|.               +.++.+++.|++|++||+.++     
T Consensus       250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-----  324 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-----  324 (406)
T ss_pred             EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----
Confidence            9999999999999999998877776 8889999999763               258999999999999999997     


Q ss_pred             CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCc
Q 012996          256 SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i  334 (451)
                          .++.++.+|...|..++|+| |+||+++..|+++++||++++++++++..|..-|+++.|+.+..++++|+-|.++
T Consensus       325 ----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~  400 (406)
T KOG0295|consen  325 ----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTV  400 (406)
T ss_pred             ----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccccee
Confidence                77889999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 012996          335 TSSRR  339 (451)
Q Consensus       335 ~iw~~  339 (451)
                      ++|..
T Consensus       401 KvwEc  405 (406)
T KOG0295|consen  401 KVWEC  405 (406)
T ss_pred             eeeec
Confidence            99963

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=252.35  Aligned_cols=284  Identities=18%  Similarity=0.258  Sum_probs=240.3

Q ss_pred             ecCCCCCCceEEecceEeec-cCcccCCCCCCccEEEEECCC-Cceeee----ecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996           30 KSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSK-PQVEVK----SLPAEPIKPIAANSHGTYIAGGGQSGD  103 (451)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~-~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~  103 (451)
                      +.+.+|...+..++  |+|. |..||++|.| ..|++|+... .....+    ..|...|++++|+|.|++||+|+.|++
T Consensus         8 ~~~~gh~~r~W~~a--whp~~g~ilAscg~D-k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVA--WHPGKGVILASCGTD-KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             EeecCCCCcEEEEE--eccCCceEEEeecCC-ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            34445667899999  9999 8899999998 9999999884 333322    348899999999999999999999999


Q ss_pred             EEEEEcCCC--cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996          104 IYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (451)
Q Consensus       104 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (451)
                      +.||.-..+  +++.++.+|...|.|++|+++|++||+++.|..|-||.+..        .....+...+.+|+..|..+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de--------ddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE--------DDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC--------CCcEEEEeeeccccccccEE
Confidence            999987654  67888999999999999999999999999999999999864        24566788899999999999


Q ss_pred             EEeecCCeeEEEEeeCCCcEEEEEcCC---Cceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          182 VIGYGGVSATIVSASEDRTCKVWSLLK---GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      .|+|..  .+|++++.|.+|++|+-..   -.+..++. +...|.+++|+|.|..|++++.|+.++||.....-      
T Consensus       157 ~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------  228 (312)
T KOG0645|consen  157 IWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------  228 (312)
T ss_pred             EEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------
Confidence            999988  7999999999999998662   35677776 67799999999999999999999999999866431      


Q ss_pred             CceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCC------ceEE-EeecCCCCeeEEEEEec-Cceeeecc
Q 012996          258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITH------NIVR-MFRLAKGPVNNILVVRR-PLYLNLGS  329 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~l~~s~~-~~~l~~~s  329 (451)
                             -..|..+++.+.|. ...|++++.|+.|++|.-...      +.+. .-..|...|++++|.|. ..+|++++
T Consensus       229 -------~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~  300 (312)
T KOG0645|consen  229 -------SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG  300 (312)
T ss_pred             -------chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence                   12377899999998 789999999999999976542      1122 33467889999999994 78999999


Q ss_pred             CCCCccccccC
Q 012996          330 FSNPHTSSRRH  340 (451)
Q Consensus       330 ~d~~i~iw~~~  340 (451)
                      .||.+++|.+.
T Consensus       301 DDG~v~~W~l~  311 (312)
T KOG0645|consen  301 DDGIVNFWELE  311 (312)
T ss_pred             CCceEEEEEec
Confidence            99999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-38  Score=284.05  Aligned_cols=282  Identities=26%  Similarity=0.428  Sum_probs=251.3

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccC-CCEEEEEcCCCcc
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVASGRL  114 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~  114 (451)
                      ..+++.+  |++....||++-.. |...+|.+..-.+... .....+|..++|+..|.+||.|+.. |.+.||+..+...
T Consensus       266 ~kvtaa~--fH~~t~~lvvgFss-G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY  342 (893)
T KOG0291|consen  266 SKVTAAA--FHKGTNLLVVGFSS-GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY  342 (893)
T ss_pred             cceeeee--ccCCceEEEEEecC-CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence            5677777  99999999988887 9999999987766544 3456899999999999999998765 8899999999999


Q ss_pred             eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      +...++|...+++++++|||+++++|+.||.|+|||.           ...-+..+|..|+..|+.+.|+..+  +.+++
T Consensus       343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~-----------~SgfC~vTFteHts~Vt~v~f~~~g--~~lls  409 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT-----------QSGFCFVTFTEHTSGVTAVQFTARG--NVLLS  409 (893)
T ss_pred             eeeccccccceeeEEECCCCcEEEeccCCCcEEEEec-----------cCceEEEEeccCCCceEEEEEEecC--CEEEE
Confidence            9999999999999999999999999999999999999           4566899999999999999999998  89999


Q ss_pred             eeCCCcEEEEEcCCCceeeeeeccc--ceeEEEECCCCCEEEEEeCCC-cEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
                      ++.||+|+.||+...+..+++..+.  ...|++.+|.|..+++|+.|. .|++|++.++         +.+-.+.||.++
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---------qllDiLsGHEgP  480 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---------QLLDILSGHEGP  480 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---------eeeehhcCCCCc
Confidence            9999999999999999999998554  467888999999999999887 6999999998         678899999999


Q ss_pred             eeEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          272 VTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       272 v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      |.+++|+| +..|++||.|.+|++||+-... .+.++. +...+..++|+|+|+.||+++.||.|.+||......
T Consensus       481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence            99999999 9999999999999999986553 444454 467899999999999999999999999999875543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-37  Score=268.61  Aligned_cols=320  Identities=15%  Similarity=0.216  Sum_probs=254.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee----c
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS----L   78 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~----~   78 (451)
                      ..++||+ .|++|.+|+=..-+...+++   .|..-|.|+.  |+|||..+|+++.| |+|.+||-.+++.....    .
T Consensus       161 fRi~T~s-dDn~v~ffeGPPFKFk~s~r---~HskFV~~VR--ysPDG~~Fat~gsD-gki~iyDGktge~vg~l~~~~a  233 (603)
T KOG0318|consen  161 FRIATGS-DDNTVAFFEGPPFKFKSSFR---EHSKFVNCVR--YSPDGSRFATAGSD-GKIYIYDGKTGEKVGELEDSDA  233 (603)
T ss_pred             eEEEecc-CCCeEEEeeCCCeeeeeccc---ccccceeeEE--ECCCCCeEEEecCC-ccEEEEcCCCccEEEEecCCCC
Confidence            4689999 99999999855444444444   4557788888  99999999999999 99999999888765433    5


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-----------------------------------------
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-----------------------------------------  117 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------------------  117 (451)
                      |.+.|.+++|+||+..+++++.|.+++|||+.+.+++.+                                         
T Consensus       234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~  313 (603)
T KOG0318|consen  234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL  313 (603)
T ss_pred             ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence            899999999999999999999999999999976544433                                         


Q ss_pred             --eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc---------------------------------
Q 012996          118 --WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR---------------------------------  162 (451)
Q Consensus       118 --~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------------------------------  162 (451)
                        +.+|...|+++..+|++++|++|+.||.|.-|+..++........                                 
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~  393 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD  393 (603)
T ss_pred             heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence              337999999999999999999999999999999866533211000                                 


Q ss_pred             ----------ccccc-------------------eecccCC--------cCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996          163 ----------ASHLY-------------------LHSFTGH--------TLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (451)
Q Consensus       163 ----------~~~~~-------------------~~~~~~~--------~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd  205 (451)
                                -..++                   +..+..+        .-...+++++|++  ..++.|+.|+.|++|.
T Consensus       394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVGG~Dgkvhvys  471 (603)
T KOG0318|consen  394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVGGQDGKVHVYS  471 (603)
T ss_pred             CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEEEEecccceEEEEE
Confidence                      00000                   0000111        1123567788888  8999999999999999


Q ss_pred             cCCCcee---eeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996          206 LLKGRLL---RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (451)
Q Consensus       206 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  281 (451)
                      +......   ....|.++|++++++|++.+|++|...+.+.+||..+...        ......-|...|.+++|+| ..
T Consensus       472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--------~~~~w~FHtakI~~~aWsP~n~  543 (603)
T KOG0318|consen  472 LSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--------KTNRWAFHTAKINCVAWSPNNK  543 (603)
T ss_pred             ecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--------ecceeeeeeeeEEEEEeCCCce
Confidence            9875543   3445899999999999999999999999999999998752        2334555999999999999 99


Q ss_pred             EEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          282 LLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       282 ~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ++|+|+-|-.|.||++.... .+.....|...|+.+.|-.+ ..+++++.|-.|++|++.
T Consensus       544 ~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  544 LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence            99999999999999998754 34445578888999999865 578999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-39  Score=264.61  Aligned_cols=269  Identities=22%  Similarity=0.330  Sum_probs=242.1

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce--eeeecC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLP   79 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~--~~~~~~   79 (451)
                      +.++++++ .|++|++||..+|+....+++|.   .++..+.  |+..|+++|+++.| -.+.+||.++...  .....|
T Consensus       120 ~~~v~~as-~d~tikv~D~~tg~~e~~LrGHt---~sv~di~--~~a~Gk~l~tcSsD-l~~~LWd~~~~~~c~ks~~gh  192 (406)
T KOG0295|consen  120 EALVVSAS-EDATIKVFDTETGELERSLRGHT---DSVFDIS--FDASGKYLATCSSD-LSAKLWDFDTFFRCIKSLIGH  192 (406)
T ss_pred             ceEEEEec-CCceEEEEEccchhhhhhhhccc---cceeEEE--EecCccEEEecCCc-cchhheeHHHHHHHHHHhcCc
Confidence            35788898 99999999999999998888766   4577777  99999999999998 6699999986433  234568


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...|.++.|-|.|.++++++.|.+|+.|++.+|.++.++.+|...|..++.+.||.++++++.|.+|++|-+.+      
T Consensus       193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t------  266 (406)
T KOG0295|consen  193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT------  266 (406)
T ss_pred             ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc------
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999944      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecC-------------CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEE
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGG-------------VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA  225 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~-------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~  225 (451)
                           ..+...+..|..+|.+++|.|..             .+.++.+++.|++|++||+.++.++.++. |...|..++
T Consensus       267 -----~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  267 -----KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             -----chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence                 55667788999999999996632             12589999999999999999999999988 899999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      |+|.|+||+++.+|+++++||+++.         ++...+..|..-|+++.|+. ..++++|+-|.++++|..
T Consensus       342 f~p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  342 FSPGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EcCCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999997         56778889999999999998 889999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-38  Score=285.72  Aligned_cols=313  Identities=16%  Similarity=0.206  Sum_probs=270.7

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECC
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANS   90 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~   90 (451)
                      .|..+.++|.++.+..+.+-+...   .|..+. .+-|..+++|+++.. +.+++|+..+..+.+...|.+.|.+++...
T Consensus       301 aeQnl~l~d~~~l~i~k~ivG~nd---EI~Dm~-~lG~e~~~laVATNs-~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~  375 (775)
T KOG0319|consen  301 AEQNLFLYDEDELTIVKQIVGYND---EILDMK-FLGPEESHLAVATNS-PELRLYTLPTSYCQIIPGHTEAVLSLDVWS  375 (775)
T ss_pred             ccceEEEEEccccEEehhhcCCch---hheeee-ecCCccceEEEEeCC-CceEEEecCCCceEEEeCchhheeeeeecc
Confidence            468899999999999888876553   444444 133788999999988 999999999999999999999999999767


Q ss_pred             CCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           91 HGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      +|-+|++|+.|.++++|.++++    .++....+|...|.+++++.. ..+|+++|.|+++++|++....+...  ....
T Consensus       376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~~  453 (775)
T KOG0319|consen  376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIVL  453 (775)
T ss_pred             cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--ccee
Confidence            7889999999999999988544    344566899999999999763 46899999999999999965211111  1111


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEE
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (451)
                      ....+-..|...|++++++|+.  .+++|||.|++.+||++........+. |...+.++.|+|..+.+++++.|++|+|
T Consensus       454 ~~~~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI  531 (775)
T KOG0319|consen  454 TCRYTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI  531 (775)
T ss_pred             hhhHHHHhhcccccceEecCCC--ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence            1222446799999999999998  899999999999999999888888888 8999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc
Q 012996          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL  323 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~  323 (451)
                      |.+.+.         .++.++.||...|..+.|-. +..|++++.||-|++|++.+++|+.++..|.+.|++++.+|.+.
T Consensus       532 W~is~f---------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~  602 (775)
T KOG0319|consen  532 WSISTF---------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD  602 (775)
T ss_pred             EEeccc---------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence            999986         77899999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCccccccCC
Q 012996          324 YLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       324 ~l~~~s~d~~i~iw~~~~  341 (451)
                      +++||+.||.+.+|.-.+
T Consensus       603 ~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  603 MFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             eeEecCCCeEEEEeecCc
Confidence            999999999999998543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-39  Score=269.00  Aligned_cols=286  Identities=15%  Similarity=0.238  Sum_probs=243.3

Q ss_pred             ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce----eeeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996           30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (451)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  105 (451)
                      +....|.+.|..+.  ||++|++||+++.| .+..+|.+.....    .....|..+|..+.||||.++|++++.+..+.
T Consensus       218 qil~~htdEVWfl~--FS~nGkyLAsaSkD-~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQ--FSHNGKYLASASKD-STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhHhhCCCcEEEEE--EcCCCeeEeeccCC-ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            34446778999999  99999999999999 9999999764332    12345889999999999999999999999999


Q ss_pred             EEEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC-cCceeEEEE
Q 012996          106 MWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVI  183 (451)
Q Consensus       106 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~  183 (451)
                      +||+.+|.+...+. +|...+.+++|.|||..+++|+.|+.+..||+...            ......+- ...|.++++
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn------------~~~~W~gvr~~~v~dlai  362 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN------------ILGNWEGVRDPKVHDLAI  362 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc------------hhhcccccccceeEEEEE
Confidence            99999999887774 45688999999999999999999999999999431            12223322 256899999


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (451)
                      .++|  .++++.+.|..|++++..+......+....+|++++++.+++++++.-.+..+++||+...         ..+.
T Consensus       363 t~Dg--k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---------~lv~  431 (519)
T KOG0293|consen  363 TYDG--KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---------KLVR  431 (519)
T ss_pred             cCCC--cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---------hHHH
Confidence            9999  8999999999999999988777767778899999999999999999999999999999964         5566


Q ss_pred             eeccCCcc--eeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccc
Q 012996          264 SLSDHSKA--VTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       264 ~~~~~~~~--v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~  338 (451)
                      .+.||...  +-.-+|.-  ..++++||.|+.|+||+..+++++.++.+|...|++++|+| +..++|+||+||+|+||.
T Consensus       432 kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  432 KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            77788653  33345544  57999999999999999999999999999999999999999 567889999999999998


Q ss_pred             cCC
Q 012996          339 RHG  341 (451)
Q Consensus       339 ~~~  341 (451)
                      ...
T Consensus       512 ~~~  514 (519)
T KOG0293|consen  512 PSD  514 (519)
T ss_pred             CCc
Confidence            663

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.2e-38  Score=290.58  Aligned_cols=281  Identities=27%  Similarity=0.441  Sum_probs=247.7

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--eeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc-C
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-A  110 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~  110 (451)
                      +...+.++.  |+++|+.+++++.+ +.+++|+.....  .... ..|...|.+++|+|++.++++++.|++|+|||+ .
T Consensus       158 ~~~sv~~~~--fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  158 ECPSVTCVD--FSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             ccCceEEEE--EcCCCCeEEEccCC-CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence            357788888  99999999999888 999999996555  2222 468899999999999999999999999999999 5


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      .+..++++.+|...|++++|+|+++++++|+.|++|++||+++           ..+...+.+|...|++++|++++  .
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-----------~~~~~~l~~hs~~is~~~f~~d~--~  301 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-----------GECVRKLKGHSDGISGLAFSPDG--N  301 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-----------CeEEEeeeccCCceEEEEECCCC--C
Confidence            5688999999999999999999999999999999999999954           66788999999999999999999  8


Q ss_pred             EEEEeeCCCcEEEEEcCCCc--eeeeee-ccc--ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          191 TIVSASEDRTCKVWSLLKGR--LLRNIV-FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      +|++++.|+.|++||+.++.  +...+. +..  .+++++|+|++.++++++.|+.+++||+...         .....+
T Consensus       302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~  372 (456)
T KOG0266|consen  302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---------KSVGTY  372 (456)
T ss_pred             EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---------cceeee
Confidence            99999999999999999998  445554 222  6899999999999999999999999999986         445566


Q ss_pred             ccCCcce---eEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEEecCceeeecc--CCCCccccc
Q 012996          266 SDHSKAV---TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLGS--FSNPHTSSR  338 (451)
Q Consensus       266 ~~~~~~v---~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~s--~d~~i~iw~  338 (451)
                      .+|...+   .+...++ +.++++|+.|+.|.+||+.++..+..+.+| ...+..+.++|..+++++++  .|+.+++|.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            6776643   3344456 999999999999999999999999999999 89999999999999999998  789999998


Q ss_pred             cC
Q 012996          339 RH  340 (451)
Q Consensus       339 ~~  340 (451)
                      ..
T Consensus       453 ~~  454 (456)
T KOG0266|consen  453 YD  454 (456)
T ss_pred             CC
Confidence            65

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.9e-37  Score=271.48  Aligned_cols=280  Identities=28%  Similarity=0.493  Sum_probs=248.6

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      +|...|.++.  |+|+++++++++.+ |.|.+|++.+.... ....|...+..+.|+|+++++++++.+|.|++|++.++
T Consensus         7 ~h~~~i~~~~--~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           7 GHTGGVTCVA--FSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             ccCCCEEEEE--EcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            4567899999  99999999999987 99999999876543 33457788899999999999999999999999999998


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      +.+..+..|...|.++.|+++++++++++.||.|.+||+.+           ......+..|...+.++.|++++  .++
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l  150 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-----------GKCLTTLRGHTDWVNSVAFSPDG--TFV  150 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-----------cEEEEEeccCCCcEEEEEEcCcC--CEE
Confidence            88888999999999999999988888888899999999953           33455666889999999999986  788


Q ss_pred             EEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996          193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
                      ++++.++.|++||+++++....+. +...+.+++|+|+++.+++++.++.|++||++..         ..+..+..|...
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~  221 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------KCLGTLRGHENG  221 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------ceecchhhcCCc
Confidence            888889999999999888887776 5668999999999999999999999999999875         345566678889


Q ss_pred             eeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       272 v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      +.++.|+| +.++++++.||.|++||+.+++.+..+..|...|.+++|+|++.+|++++.||.+++|+
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999999 88888888899999999999999999999999999999999999999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.2e-37  Score=249.04  Aligned_cols=284  Identities=18%  Similarity=0.288  Sum_probs=245.7

Q ss_pred             CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc
Q 012996           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV  109 (451)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  109 (451)
                      ..+|...|..+.  |+|+|.++|++|.| ..|.+|++....  ......|.++|..+.|.+|++.+++++.|.+|+.||+
T Consensus        43 l~gh~geI~~~~--F~P~gs~~aSgG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   43 LPGHKGEIYTIK--FHPDGSCFASGGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             cCCCcceEEEEE--ECCCCCeEeecCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            345777888888  99999999999999 999999965432  3344579999999999999999999999999999999


Q ss_pred             CCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996          110 ASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (451)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (451)
                      ++|+.++.+++|...|+.+.-+.-| .++.+++.||++++||+++           ...++++. ....++++.|...+ 
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-----------k~~~~t~~-~kyqltAv~f~d~s-  186 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-----------KEAIKTFE-NKYQLTAVGFKDTS-  186 (338)
T ss_pred             ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-----------cchhhccc-cceeEEEEEecccc-
Confidence            9999999999999999999854433 5677899999999999965           22333332 45678899998887 


Q ss_pred             eeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996          189 SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (451)
Q Consensus       189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (451)
                       ..+++|+-|+.|++||++.+.....+. |...|+.+..+|+|.++.+-+.|.++++||++...+..     +++..+.+
T Consensus       187 -~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~g  260 (338)
T KOG0265|consen  187 -DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQG  260 (338)
T ss_pred             -cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC-----ceEEEeec
Confidence             799999999999999999999988888 88999999999999999999999999999998765432     44666666


Q ss_pred             CCc----ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccc
Q 012996          268 HSK----AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (451)
Q Consensus       268 ~~~----~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw  337 (451)
                      |..    ....++|+| +..+.+|+.|..+++||..+...+..+.+|.+.|.+++|+|...+|.+++.|.+|++=
T Consensus       261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            643    456689999 9999999999999999999999999999999999999999999999999999998763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.7e-37  Score=243.69  Aligned_cols=272  Identities=17%  Similarity=0.346  Sum_probs=227.2

Q ss_pred             EEEeecCCCCCCeEEEECccC---ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---ee
Q 012996            3 LLIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VK   76 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---~~   76 (451)
                      .+||||+ .|+.|++|++..+   .+...+  ..+|.+.|..++  |+|.|++||+++.| .++.||.-..+...   ..
T Consensus        28 ~ilAscg-~Dk~vriw~~~~~~s~~ck~vl--d~~hkrsVRsvA--wsp~g~~La~aSFD-~t~~Iw~k~~~efecv~~l  101 (312)
T KOG0645|consen   28 VILASCG-TDKAVRIWSTSSGDSWTCKTVL--DDGHKRSVRSVA--WSPHGRYLASASFD-ATVVIWKKEDGEFECVATL  101 (312)
T ss_pred             eEEEeec-CCceEEEEecCCCCcEEEEEec--cccchheeeeee--ecCCCcEEEEeecc-ceEEEeecCCCceeEEeee
Confidence            5799999 9999999998843   233333  237889999999  99999999999999 99999997766544   33


Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC---cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ..|...|.|++|+++|++||+++.|..|.||.+..+   ++...++.|...|..+.|+|...+|++++.|.+|++|+-..
T Consensus       102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC
Confidence            568999999999999999999999999999998754   56778899999999999999999999999999999998752


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (451)
                              .....+..++.+|...|.+++|.+.|  ..|++++.|++++||-..+.   ....|...++.+.|.  ...|
T Consensus       182 --------dddW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~I  246 (312)
T KOG0645|consen  182 --------DDDWECVQTLDGHENTVWSLAFDNIG--SRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVI  246 (312)
T ss_pred             --------CCCeeEEEEecCccceEEEEEecCCC--ceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccce
Confidence                    25677899999999999999999988  89999999999999987622   112266789999998  7789


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceee-eeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~  298 (451)
                      ++++.|+.|++|.-.... ..  ..+..+ ..-..|...|+++.|+|  .+.|++|+.||.|++|.+.
T Consensus       247 aS~ggD~~i~lf~~s~~~-d~--p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSP-DE--PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EeccCCCEEEEEEecCCC-CC--chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            999999999999876421 11  112222 24456889999999999  8899999999999999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.1e-39  Score=267.80  Aligned_cols=267  Identities=20%  Similarity=0.342  Sum_probs=234.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~   81 (451)
                      ..|++|+ ..|.+.+|+..+-.....++   .|...|.++.  |+++|.+++++..+ |.|++|+.+-..+..... |.+
T Consensus       109 RRLltgs-~SGEFtLWNg~~fnFEtilQ---aHDs~Vr~m~--ws~~g~wmiSgD~g-G~iKyWqpnmnnVk~~~ahh~e  181 (464)
T KOG0284|consen  109 RRLLTGS-QSGEFTLWNGTSFNFETILQ---AHDSPVRTMK--WSHNGTWMISGDKG-GMIKYWQPNMNNVKIIQAHHAE  181 (464)
T ss_pred             ceeEeec-ccccEEEecCceeeHHHHhh---hhcccceeEE--EccCCCEEEEcCCC-ceEEecccchhhhHHhhHhhhh
Confidence            4688899 99999999974433332334   4557777888  99999999999998 999999988666655544 559


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|...++++||.|..|++||.++        
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS--------  253 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--------  253 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC--------
Confidence            999999999999999999999999999999988889999999999999999999999999999999999955        


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC-CCCEEEEEeCC
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGSRD  239 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~d  239 (451)
                         ..++.++.+|+..|..+.|.+++  ++|+++|.|..++++|+++.+.+..+. |...+.++.|+| ...+|.+|+.|
T Consensus       254 ---g~cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  254 ---GSCLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             ---cchhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence               56788899999999999999999  899999999999999999888888887 999999999999 67889999999


Q ss_pred             CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      |.|..|.+....+        ....-.+|...|++++|+| |.+|++|+.|.++++|.-
T Consensus       329 gsvvh~~v~~~~p--------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  329 GSVVHWVVGLEEP--------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             CceEEEecccccc--------ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            9999999985432        2233457999999999999 999999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.2e-38  Score=259.73  Aligned_cols=283  Identities=19%  Similarity=0.332  Sum_probs=243.6

Q ss_pred             eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996           27 LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (451)
Q Consensus        27 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  105 (451)
                      .++........+|.|+.  |  |...+++|..| ++|+|||.++..+. ...+|.+.|.|+.|.  .+.+++|+.|.+|+
T Consensus       188 ~rinc~Se~skgVYClQ--Y--DD~kiVSGlrD-nTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvr  260 (499)
T KOG0281|consen  188 QRINCRSENSKGVYCLQ--Y--DDEKIVSGLRD-NTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVR  260 (499)
T ss_pred             eeecCCcccCCceEEEE--e--cchhhhccccc-CceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEE
Confidence            34444445567888877  4  66778888888 99999998877655 446799999999996  56999999999999


Q ss_pred             EEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      |||+++++++.++-.|...|..+.|+  ..++++++.|.++.+||+...        ....+.+.+.+|...|+.+.|+.
T Consensus       261 vWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sp--------s~it~rrVLvGHrAaVNvVdfd~  330 (499)
T KOG0281|consen  261 VWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASP--------TDITLRRVLVGHRAAVNVVDFDD  330 (499)
T ss_pred             EEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCc--------hHHHHHHHHhhhhhheeeecccc
Confidence            99999999999999999999999998  568999999999999999652        22345667889999999998854


Q ss_pred             cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       186 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                          +++++++.|.+|++|++.+++.++.+. |...|.|+.+  .++++++|+.|.+|++||+..+         .++..
T Consensus       331 ----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---------~cLRv  395 (499)
T KOG0281|consen  331 ----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRV  395 (499)
T ss_pred             ----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---------HHHHH
Confidence                699999999999999999999999998 8888888876  7899999999999999999987         66888


Q ss_pred             eccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc---------eEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       265 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                      +.||..-|.++.|. ...+++|+.||+|++||+..+.         ++.++..|.+.|..+.|.  ...+++++.|.+|.
T Consensus       396 LeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtIL  472 (499)
T KOG0281|consen  396 LEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTIL  472 (499)
T ss_pred             HhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEE
Confidence            99999999999998 6889999999999999987654         455666789999999997  46799999999999


Q ss_pred             ccccCCCCC
Q 012996          336 SSRRHGSQL  344 (451)
Q Consensus       336 iw~~~~~~~  344 (451)
                      |||+....+
T Consensus       473 iWdFl~~~~  481 (499)
T KOG0281|consen  473 IWDFLNGPP  481 (499)
T ss_pred             EEEcCCCCc
Confidence            999876543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-36  Score=302.22  Aligned_cols=307  Identities=15%  Similarity=0.197  Sum_probs=247.6

Q ss_pred             CCCeEEEECccCceeeeeec--CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--------eeeeecCCC
Q 012996           12 DTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEVKSLPAE   81 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------~~~~~~~~~   81 (451)
                      +|.+++|+..+......++.  ...|...|.+++  |+|+|+++|+++.| +.|+||+.....        ......+..
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~--fs~dg~~latgg~D-~~I~iwd~~~~~~~~~~~~~~~~~~~~~~  533 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIG--FDRDGEFFATAGVN-KKIKIFECESIIKDGRDIHYPVVELASRS  533 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEE--ECCCCCEEEEEeCC-CEEEEEECCcccccccccccceEEecccC
Confidence            56788898876665544432  234678899999  99999999999998 999999975321        111223456


Q ss_pred             CeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      .|.+++|+| ++.+|++++.||.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||+++      
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~------  607 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ------  607 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC------
Confidence            899999987 578999999999999999999999999999999999999997 789999999999999999954      


Q ss_pred             hhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEEEECCCCCEEEEE
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~  236 (451)
                           ...+..+..+ ..+.++.|.+ ++  .++++|+.||.|++||+++.. .+..+. |...|.++.|. ++.+|+++
T Consensus       608 -----~~~~~~~~~~-~~v~~v~~~~~~g--~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~  678 (793)
T PLN00181        608 -----GVSIGTIKTK-ANICCVQFPSESG--RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS  678 (793)
T ss_pred             -----CcEEEEEecC-CCeEEEEEeCCCC--CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence                 2234444433 5788898864 44  899999999999999998765 344443 78899999997 67899999


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe---------
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF---------  306 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~---------  306 (451)
                      +.|+.|++||++....   .....++..+.+|...+.+++|+| +.+|++|+.||.|++|+.....++..+         
T Consensus       679 s~D~~ikiWd~~~~~~---~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~  755 (793)
T PLN00181        679 STDNTLKLWDLSMSIS---GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS  755 (793)
T ss_pred             ECCCEEEEEeCCCCcc---ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence            9999999999975321   111245678889999999999999 999999999999999998766544322         


Q ss_pred             ----ecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          307 ----RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       307 ----~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                          ..|...|.+++|+|++..|++|+.||.|++|+.
T Consensus       756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        756 GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence                234457999999999999999999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-37  Score=272.78  Aligned_cols=279  Identities=18%  Similarity=0.311  Sum_probs=256.2

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  113 (451)
                      +...|.++.  |+|....++++-.+ |.|.|||.++...... .....+|.+..|-+..+++++|+.|..|+||+..+++
T Consensus        12 rSdRVKsVd--~HPtePw~la~Lyn-G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen   12 RSDRVKSVD--FHPTEPWILAALYN-GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             cCCceeeee--cCCCCceEEEeeec-CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            557788888  99999999999888 9999999988765433 3357799999999999999999999999999999999


Q ss_pred             ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      .+..|.+|.+.|.+++.+|...+++|++.|-.|++||...          ...+.+++.+|+..|.+++|.|... +.++
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~----------~wa~~qtfeGH~HyVMqv~fnPkD~-ntFa  157 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN----------EWACEQTFEGHEHYVMQVAFNPKDP-NTFA  157 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC----------ceeeeeEEcCcceEEEEEEecCCCc-ccee
Confidence            9999999999999999999999999999999999999954          6778899999999999999999866 8999


Q ss_pred             EeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      +++.|++|++|.+.+..+..++. |...|+|+++-+  +..+|++|++|..|++||..+.         .++.++.||..
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~  228 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTN  228 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---------HHHHHhhcccc
Confidence            99999999999999998888888 899999999988  4579999999999999999986         67889999999


Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                      .|..+.|+| -..+++|+.||+++||+..+-+...++......|++++-.+.+..++.|.+.|.+.+
T Consensus       229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999 999999999999999999999999999888889999999999989999988887755

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.2e-37  Score=254.70  Aligned_cols=255  Identities=18%  Similarity=0.288  Sum_probs=234.6

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  156 (451)
                      ..|.+.|.|+++.|.+.+|++|+.|++|+|||+.+|++..++.+|-..|..+++++-..|+++++.|+.|+.||+     
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL-----  222 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL-----  222 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec-----
Confidence            458899999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEE
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  235 (451)
                            .....++.+.+|-..|.+++.+|.-  ..|++|+.|.++++||+++...+..+. |..+|.++.+.|-...+++
T Consensus       223 ------e~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  223 ------EYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             ------hhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence                  4567889999999999999999987  899999999999999999999999998 9999999999999999999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCee
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN  314 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  314 (451)
                      |+.|++|++||++.+         +...++..|...|.+++.+| ...|++++.| .|+-|++..|..+..+.+|.+-|.
T Consensus       295 ~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iin  364 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIIN  364 (460)
T ss_pred             ecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceee
Confidence            999999999999997         45668888999999999999 8888888877 499999999999999999999999


Q ss_pred             EEEEEecCceeeeccCCCCccccccCCCCCCCccccccccc
Q 012996          315 NILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA  355 (451)
Q Consensus       315 ~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~~~~~  355 (451)
                      +++...|+ ++++|++.|.+.+||.+.+..++.....+...
T Consensus       365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG  404 (460)
T KOG0285|consen  365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG  404 (460)
T ss_pred             eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCC
Confidence            99999887 88899999999999999887766654444433

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.7e-37  Score=237.35  Aligned_cols=279  Identities=18%  Similarity=0.257  Sum_probs=244.2

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      ..+..+|..+.  |..+|+|.+++|.| .+|++|+...+.+... ..|...|..++.+.|+..+++|+.|..+.+||+.+
T Consensus        14 ~~~qgaV~avr--yN~dGnY~ltcGsd-rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   14 DCAQGAVRAVR--YNVDGNYCLTCGSD-RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             cccccceEEEE--EccCCCEEEEcCCC-ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            45556777777  99999999999999 9999999888776544 56888999999999999999999999999999999


Q ss_pred             CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  191 (451)
                      |+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||-++         ....+++.+......|.++.+..    ..
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS---------~s~ePiQildea~D~V~Si~v~~----he  157 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS---------RSFEPIQILDEAKDGVSSIDVAE----HE  157 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc---------CCCCccchhhhhcCceeEEEecc----cE
Confidence            999999999999999999999999999999999999999987         56778888888899999998865    57


Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996          192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
                      |++|+.||+++.||++.|+..... ...+|++++|+++++..++++-|+.+++.|-.++         +.+..+.+|...
T Consensus       158 IvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~  227 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNM  227 (307)
T ss_pred             EEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchh---------HHHHHhcccccc
Confidence            999999999999999998765433 6789999999999999999999999999999987         567788888765


Q ss_pred             eeE--EEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEEecCceeeeccCCCCccccc
Q 012996          272 VTC--LAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       272 v~~--~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      =+.  .+++. ...+++|++||.|.+||+.....+..+..+... |+++.++|.-..|+++...+ +.+|.
T Consensus       228 eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~  297 (307)
T KOG0316|consen  228 EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY  297 (307)
T ss_pred             eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence            443  45566 889999999999999999999999999999887 99999999887777765433 34443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.5e-38  Score=267.66  Aligned_cols=284  Identities=19%  Similarity=0.318  Sum_probs=246.7

Q ss_pred             CCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEE
Q 012996           32 CASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        32 ~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  108 (451)
                      ..+|..+|.++.  |.| .+.++++++.| +.|+||++......  ....|..+|..++|+++|..+++++.|+.|++||
T Consensus       210 ~~gH~kgvsai~--~fp~~~hLlLS~gmD-~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  210 LSGHTKGVSAIQ--WFPKKGHLLLSGGMD-GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             ccCCccccchhh--hccceeeEEEecCCC-ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            345778888888  999 88888999998 99999998763332  3356899999999999999999999999999999


Q ss_pred             cCCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996          109 VASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (451)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (451)
                      +++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++           ...++.+..|-+.|..+.|-+++
T Consensus       287 tETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------~kvvqeYd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  287 TETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------GKVVQEYDRHLGAILDITFVDEG  354 (503)
T ss_pred             cccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------hHHHHHHHhhhhheeeeEEccCC
Confidence            99999999885 34678999999988 8899999999999999966           44678888999999999999998


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                        ..+++++.|+.++||+.+.+..+..+.  ......++..+|++.++++-+.|+.|.+|.+...-.      ...-..+
T Consensus       355 --~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r------~nkkK~f  426 (503)
T KOG0282|consen  355 --RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR------LNKKKRF  426 (503)
T ss_pred             --ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc------cCHhhhh
Confidence              899999999999999999888777665  345677899999999999999999999999765432      2334567


Q ss_pred             ccCCc--ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec-CceeeeccCCCCccccc
Q 012996          266 SDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-PLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       266 ~~~~~--~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~s~d~~i~iw~  338 (451)
                      .+|..  .-..+.||| |.+|++|+.||.+.+||.++-+++..++.|.+++..+.|+|. ...+|+++.||.|++|+
T Consensus       427 eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  427 EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            77754  456689999 999999999999999999999999999999999999999994 46889999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.4e-37  Score=253.53  Aligned_cols=291  Identities=22%  Similarity=0.256  Sum_probs=249.0

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCC---CcEEEEeccCCCEEEEEcCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~  111 (451)
                      |...|.++.  ..  ++.+++++.| |.+++||...........|.++|.+++|.-.   ...|++++.|.++++|..+.
T Consensus       104 hdDWVSsv~--~~--~~~IltgsYD-g~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  104 HDDWVSSVK--GA--SKWILTGSYD-GTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             chhhhhhhc--cc--CceEEEeecC-CeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            445555554  32  7899999999 9999999988888888899999998888432   33699999999999999987


Q ss_pred             Ccce----eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh--------------hhhhhcccccceecccC
Q 012996          112 GRLL----KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE--------------ECESQRASHLYLHSFTG  173 (451)
Q Consensus       112 ~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~  173 (451)
                      ++..    ....+|...|-++...++|..+++|+.|.+|.+|+..+...              ..........++.++.+
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            7543    33469999999999999999999999999999999432110              01112234567788999


Q ss_pred             CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (451)
Q Consensus       174 ~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (451)
                      |..+|.++.|++.   ..+++++.|.+|+.||+.++.....+..+..+.++.++|..++|++|+.|..|++||.+++.. 
T Consensus       259 Ht~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-  334 (423)
T KOG0313|consen  259 HTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-  334 (423)
T ss_pred             cccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCC-
Confidence            9999999999884   699999999999999999999999999999999999999999999999999999999998753 


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                           .....++.+|.+.|.++.|+|  ...|++|+.|+++++||+++.. ++..+.+|...|.++.|+. +.++++|+.
T Consensus       335 -----s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGa  408 (423)
T KOG0313|consen  335 -----SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGA  408 (423)
T ss_pred             -----ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccC
Confidence                 245678999999999999999  7789999999999999999887 9999999999999999985 568999999


Q ss_pred             CCCccccccC
Q 012996          331 SNPHTSSRRH  340 (451)
Q Consensus       331 d~~i~iw~~~  340 (451)
                      |+.++|+.-.
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999998744

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=253.14  Aligned_cols=274  Identities=24%  Similarity=0.381  Sum_probs=244.2

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCceee---------eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV  109 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  109 (451)
                      +.|..  |+|||++|++++-| |.|.|||+.+++...         ...+..+|.|+.|+.|...+|+|+.||.|++|.+
T Consensus       216 ~EcA~--FSPDgqyLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  216 VECAR--FSPDGQYLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             hhhee--eCCCCceEeecccc-ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            44444  99999999999999 999999998876532         1235789999999999999999999999999999


Q ss_pred             CCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996          110 ASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (451)
Q Consensus       110 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (451)
                      .+|.+++.|. +|...|+|+.|+.|+..+++++.|.++++.-+           .+..++..+.+|+..|+...|.++| 
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl-----------KSGK~LKEfrGHsSyvn~a~ft~dG-  360 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL-----------KSGKCLKEFRGHSSYVNEATFTDDG-  360 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc-----------ccchhHHHhcCccccccceEEcCCC-
Confidence            9999999995 89999999999999999999999999999999           4567889999999999999999999 


Q ss_pred             eeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          189 SATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                       ..+++++.||+|++|+..+.+++.++.   ...+|+++..-| +...++++...+++++.++...          .+..
T Consensus       361 -~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----------vVrs  429 (508)
T KOG0275|consen  361 -HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----------VVRS  429 (508)
T ss_pred             -CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce----------EEee
Confidence             899999999999999999999998887   356788888888 5678899999999999998774          3333


Q ss_pred             ec---cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          265 LS---DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       265 ~~---~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      +.   ...+...+.+.+| |.++.+.+.|+.++.|.+.+|++-+++..|...|-.++-+|..+.||+-+.||.+++|+
T Consensus       430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            32   2345667778899 99999999999999999999999999999999999999999999999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-35  Score=263.35  Aligned_cols=330  Identities=17%  Similarity=0.244  Sum_probs=277.3

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+||.|- .||.|+||+..++....++.+   |..+|+++.  |...|..+++|+.| +.|.+||+-...-..+ ..|.+
T Consensus        78 l~lAVGY-aDGsVqif~~~s~~~~~tfng---HK~AVt~l~--fd~~G~rlaSGskD-t~IIvwDlV~E~Gl~rL~GHkd  150 (888)
T KOG0306|consen   78 LLLAVGY-ADGSVQIFSLESEEILITFNG---HKAAVTTLK--FDKIGTRLASGSKD-TDIIVWDLVGEEGLFRLRGHKD  150 (888)
T ss_pred             ceEEEEe-cCceEEeeccCCCceeeeecc---cccceEEEE--EcccCceEeecCCC-ccEEEEEeccceeeEEeecchH
Confidence            4578888 999999999998888777765   558899998  99999999999999 9999999876665544 56899


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh---
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC---  158 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---  158 (451)
                      .|+..-|..+.+++++.+.|+.|++||+.+..+..+.-.|.+.|+.+++.+  +.+++++.|+.+++|++.......   
T Consensus       151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~  228 (888)
T KOG0306|consen  151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN  228 (888)
T ss_pred             HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc
Confidence            999999998899999999999999999999999999999999999999986  789999999999999981100000   


Q ss_pred             ---------------------------------h-------------------------------hh------c------
Q 012996          159 ---------------------------------E-------------------------------SQ------R------  162 (451)
Q Consensus       159 ---------------------------------~-------------------------------~~------~------  162 (451)
                                                       .                               ..      .      
T Consensus       229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence                                             0                               00      0      


Q ss_pred             --------------------------------------------------------------------------------
Q 012996          163 --------------------------------------------------------------------------------  162 (451)
Q Consensus       163 --------------------------------------------------------------------------------  162 (451)
                                                                                                      
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~  388 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL  388 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------ccccceecccCCcCceeEEEEeecCCe
Q 012996          163 -----------------------------------------------------ASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       163 -----------------------------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                                                                           .....+.+...|.+.|++++.+|++  
T Consensus       389 ~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~--  466 (888)
T KOG0306|consen  389 ASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN--  466 (888)
T ss_pred             eecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC--
Confidence                                                                 0000112335788888888888988  


Q ss_pred             eEEEEeeCCCcEEEEEcCC-----Cc--------eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996          190 ATIVSASEDRTCKVWSLLK-----GR--------LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~-----~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (451)
                      ..+++|+.|.+|++||+.-     +.        ..+.+..+..|.|+.+||++++|+++--|.++++|-+++.      
T Consensus       467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------  540 (888)
T KOG0306|consen  467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------  540 (888)
T ss_pred             CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------
Confidence            8899999999999999742     11        1134456789999999999999999999999999999986      


Q ss_pred             CCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                         +..-.+.||.-||.||..|| +..++|||.|.+|+||-+.-|.|-+.+-+|...|.++.|-|+..++.++|.|+.++
T Consensus       541 ---KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  541 ---KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             ---eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence               55678899999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCcccccc
Q 012996          336 SSRRHGSQLPPPLDKYV  352 (451)
Q Consensus       336 iw~~~~~~~~~~~~~~~  352 (451)
                      -||-..-...+.++.+.
T Consensus       618 qWDg~kFe~iq~L~~H~  634 (888)
T KOG0306|consen  618 QWDGEKFEEIQKLDGHH  634 (888)
T ss_pred             eechhhhhhheeeccch
Confidence            99977655555554443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-35  Score=263.59  Aligned_cols=319  Identities=18%  Similarity=0.221  Sum_probs=268.0

Q ss_pred             CCCCeEEEECcc-Cce------eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996           11 ADTGIGCWDLES-GAE------QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus        11 ~dg~i~vwd~~~-~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      .+.+|.+|.++. +..      ...+ ...+|...|..++  ++.+...+++++.  +.+++|+..+.++...... +.+
T Consensus       342 ~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~--vS~d~~~~~Sga~--~SikiWn~~t~kciRTi~~-~y~  415 (888)
T KOG0306|consen  342 ANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLC--VSSDSILLASGAG--ESIKIWNRDTLKCIRTITC-GYI  415 (888)
T ss_pred             ecCceEEEEeccCCCCCcccccccee-eeccchhheeEEE--eecCceeeeecCC--CcEEEEEccCcceeEEecc-ccE
Confidence            467888888764 222      1112 2235778888888  9999888888877  7999999999888666544 589


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      .+..|.|.++++++|...|.+.+||+.+...+.+.++|.+.|++++.+||+..+++||.|.+|++||..-.... +....
T Consensus       416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-~gt~~  494 (888)
T KOG0306|consen  416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-PGTQK  494 (888)
T ss_pred             EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc-Ccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998542220 00000


Q ss_pred             cccce--ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCC
Q 012996          164 SHLYL--HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       164 ~~~~~--~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                      ....+  ...-.-...|.|+.++|++  .+|+.+=.|.+|++|-+.+.+..-++. |.-+|.|+.++|+++.+++|+.|.
T Consensus       495 k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK  572 (888)
T KOG0306|consen  495 KVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK  572 (888)
T ss_pred             eeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence            00000  0111235678999999999  899999999999999999988777666 889999999999999999999999


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (451)
                      .|++|-++-+         .+...+.+|...|.++.|-| ...++++|.|+.|+-||-...+.++.+.+|...|++++.+
T Consensus       573 nVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~  643 (888)
T KOG0306|consen  573 NVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS  643 (888)
T ss_pred             ceEEeccccc---------hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence            9999999887         45667889999999999999 8999999999999999999999999999999999999999


Q ss_pred             ecCceeeeccCCCCccccccCCCCCCCc
Q 012996          320 RRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       320 ~~~~~l~~~s~d~~i~iw~~~~~~~~~~  347 (451)
                      |+|.+++++|.|.+|++|......+...
T Consensus       644 ~~G~~vvs~shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  644 PNGSFVVSSSHDKSIRLWERTDEILILE  671 (888)
T ss_pred             CCCCeEEeccCCceeEeeeccCcceeee
Confidence            9999999999999999999876544433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-36  Score=274.24  Aligned_cols=283  Identities=20%  Similarity=0.311  Sum_probs=249.1

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  113 (451)
                      ....+..++  |+|....++++-.+ |.|++||..-+.+..+ ..|.++|..++|+|++.++++|+.|-.|+||+..+.+
T Consensus         8 kSsRvKgls--FHP~rPwILtslHs-G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    8 KSSRVKGLS--FHPKRPWILTSLHS-GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             cccccccee--cCCCCCEEEEeecC-ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            334556666  99999999999888 9999999987776654 4589999999999999999999999999999999999


Q ss_pred             ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      ++.++.+|.+.|..+.|++.-.+++++|.|.+|+||+.           .+..++..+.+|...|.|..|+|..  ..++
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw-----------qsr~~iavltGHnHYVMcAqFhptE--DlIV  151 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW-----------QSRKCIAVLTGHNHYVMCAQFHPTE--DLIV  151 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec-----------cCCceEEEEecCceEEEeeccCCcc--ceEE
Confidence            99999999999999999999999999999999999999           5677899999999999999999987  7999


Q ss_pred             EeeCCCcEEEEEcCCCc---------------------------e-ee-eee-cccceeEEEECCCCCEEEEEeCCCcEE
Q 012996          194 SASEDRTCKVWSLLKGR---------------------------L-LR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIY  243 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~---------------------------~-~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~  243 (451)
                      ++|.|.+|++||+..-+                           . +. .+. |...|+-++|+|.-..+++|++|..|+
T Consensus       152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK  231 (1202)
T KOG0292|consen  152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK  231 (1202)
T ss_pred             EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence            99999999999985211                           0 01 111 677899999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      +|.+...+       ...+-+..+|.+.|+++-|+| .+++++.|.|++|+|||+...+.+++++.-.+..+.++.+|..
T Consensus       232 lWrmnetK-------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l  304 (1202)
T KOG0292|consen  232 LWRMNETK-------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL  304 (1202)
T ss_pred             EEEecccc-------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence            99998754       244667889999999999999 9999999999999999999999999999888999999999999


Q ss_pred             ceeeeccCCCCccccccCC
Q 012996          323 LYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       323 ~~l~~~s~d~~i~iw~~~~  341 (451)
                      +++|.| .|+-+.++.+..
T Consensus       305 NLfAAg-HDsGm~VFkleR  322 (1202)
T KOG0292|consen  305 NLFAAG-HDSGMIVFKLER  322 (1202)
T ss_pred             ceeeee-cCCceEEEEEcc
Confidence            887776 566666676653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.8e-36  Score=258.93  Aligned_cols=266  Identities=16%  Similarity=0.275  Sum_probs=227.6

Q ss_pred             EEEeecCCCCCCeEEEECcc-CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996            3 LLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~   81 (451)
                      -+|++++ .|+.|+||++-. +.++++|.+|.   .+|..+.  |+.+|..+++++.| +.|++||++++++..+.....
T Consensus       228 hLlLS~g-mD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~--~s~~g~~fLS~sfD-~~lKlwDtETG~~~~~f~~~~  300 (503)
T KOG0282|consen  228 HLLLSGG-MDGLVKLWNVYDDRRCLRTFKGHR---KPVRDAS--FNNCGTSFLSASFD-RFLKLWDTETGQVLSRFHLDK  300 (503)
T ss_pred             eEEEecC-CCceEEEEEEecCcceehhhhcch---hhhhhhh--ccccCCeeeeeecc-eeeeeeccccceEEEEEecCC
Confidence            3788999 999999999875 88998888766   4555555  99999999999999 999999999999999888889


Q ss_pred             CeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      .++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.+++.+.|+.++||+.+..      
T Consensus       301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~------  374 (503)
T KOG0282|consen  301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP------  374 (503)
T ss_pred             CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC------
Confidence            99999999988 88999999999999999999999999999999999999999999999999999999998552      


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee---eeee---cccceeEEEECCCCCEEE
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV---FPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~---~~~~i~~~~~~~~~~~l~  234 (451)
                        .....+  ...+.....++..+|++  .+++.-+.|+.|.++.+...-..   ..+.   ..+.-..+.|||+|.+|+
T Consensus       375 --v~ik~i--~~~~~hsmP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~  448 (503)
T KOG0282|consen  375 --VPIKNI--ADPEMHTMPCLTLHPNG--KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC  448 (503)
T ss_pred             --ccchhh--cchhhccCcceecCCCC--CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence              111111  22233445578888888  89999999999999986543221   1122   345667889999999999


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEe
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd  296 (451)
                      +|..||.+.+||.++.         +.+..+..|..++..+.|+|  ...+|+|+.||.|++||
T Consensus       449 SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  449 SGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999986         56788999999999999999  88999999999999997

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-36  Score=234.33  Aligned_cols=258  Identities=17%  Similarity=0.252  Sum_probs=222.1

Q ss_pred             ccEEEEECCCCc-ee--eeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEcc-CC
Q 012996           61 GSILYWSWSKPQ-VE--VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DG  134 (451)
Q Consensus        61 g~i~vw~~~~~~-~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~  134 (451)
                      |.+.|.+...+. +.  ....-.+.+..++|+++ .+.+++++.||++++||+... .++..++.|...|.++.|++ ++
T Consensus        38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r  117 (311)
T KOG0277|consen   38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR  117 (311)
T ss_pred             ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc
Confidence            899999986333 22  22234789999999985 567888899999999996433 57888999999999999998 66


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceee
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLR  213 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~  213 (451)
                      ..+++++.|++|++|+.           .....+.++.+|...|...+|+|... +.+++++.|+++++||++.. +.+.
T Consensus       118 ~~~ltsSWD~TiKLW~~-----------~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~  185 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDP-----------NRPNSVQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMS  185 (311)
T ss_pred             eeEEeeccCCceEeecC-----------CCCcceEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeE
Confidence            77889999999999998           44667888999999999999999765 89999999999999999864 4444


Q ss_pred             eee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCC
Q 012996          214 NIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSED  289 (451)
Q Consensus       214 ~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~d  289 (451)
                       +. |...+.++.|+. +...+++|+.|+.|+.||+++-.        .++..+.+|.-.|..+.|||  ..+|++++.|
T Consensus       186 -i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD  256 (311)
T KOG0277|consen  186 -IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFSPHHASLLASASYD  256 (311)
T ss_pred             -EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence             55 778999999998 67889999999999999999876        66888999999999999999  8899999999


Q ss_pred             CcEEEEeCCCC-ceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCcccccc
Q 012996          290 GMVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       290 g~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~  339 (451)
                      -+++|||...+ ..+.+...|..-|..+.||+ ++.++|+++.|+.++||+.
T Consensus       257 mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  257 MTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999998854 45667888999999999997 7789999999999999984

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=239.24  Aligned_cols=261  Identities=23%  Similarity=0.274  Sum_probs=228.9

Q ss_pred             eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ....|.+.|..+.|+|+|.+||+|+.|..|.+|++.. -+-...+++|.++|..+.|.+|++.+++++.|.+++.||+++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            4456899999999999999999999999999999643 345677889999999999999999999999999999999955


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (451)
                                 ....+.+.+|...|+++.-+.-+. .++.+++.|+++++||+++...++.+....+++++.|...+..+
T Consensus       122 -----------G~~~rk~k~h~~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  122 -----------GKRIRKHKGHTSFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             -----------ceeeehhccccceeeecCccccCC-eEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence                       567788899999999998555543 67889999999999999999999999889999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----CceEEEeec
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRL  308 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~  308 (451)
                      .+|+-|+.|++||++..         .....+.+|..+|+.+..+| |.++.+-+.|.++++||++-    .+++..+.+
T Consensus       190 ~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g  260 (338)
T KOG0265|consen  190 ISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG  260 (338)
T ss_pred             eeccccCceeeeccccC---------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence            99999999999999886         55789999999999999999 99999999999999999874    345777777


Q ss_pred             CCC----CeeEEEEEecCceeeeccCCCCccccccCCCCCCCcccccccccc
Q 012996          309 AKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSAD  356 (451)
Q Consensus       309 ~~~----~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~  356 (451)
                      |..    ....++|+|++.++..|+.|..+++|+.....+...+..+..+..
T Consensus       261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn  312 (338)
T KOG0265|consen  261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN  312 (338)
T ss_pred             chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence            643    456789999999999999999999999988776666655554443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2e-36  Score=237.36  Aligned_cols=288  Identities=16%  Similarity=0.232  Sum_probs=251.5

Q ss_pred             cCCCCCCceEEecceEe---eccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996           31 SCASPPHGLACVGQRFL---ASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (451)
Q Consensus        31 ~~~~~~~~v~~~~~~~~---~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  106 (451)
                      .+.+|.+.|..++  |+   |+|-+|++++.| |.-.+-+-+++... ....|.+.|.+...+.+....|+++.|=+-+|
T Consensus         9 ~c~ghtrpvvdl~--~s~itp~g~flisa~kd-~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen    9 TCHGHTRPVVDLA--FSPITPDGYFLISASKD-GKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             EEcCCCcceeEEe--ccCCCCCceEEEEeccC-CCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            3446777777777  66   688899999998 88888887877765 44568999999999998888999999999999


Q ss_pred             EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      ||.-+|..+.+|. |..-|..++|+.|.++|++|+.+..++|||+..          ...+...+.+|++.|..+.|+..
T Consensus        86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~----------p~App~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR----------PKAPPKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC----------CCCCchhhcCCCCcceeEEEecc
Confidence            9999999999985 888999999999999999999999999999954          34456778999999999999988


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                      .  +.+++++.|++||+||.+++..++++..+.+|+++.++++|++|.++. .+.|.+||..+..         ++..+ 
T Consensus       155 D--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~---------~lKs~-  221 (334)
T KOG0278|consen  155 D--KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG---------LLKSY-  221 (334)
T ss_pred             C--ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEecccccc---------ceeec-
Confidence            7  788888999999999999999999999999999999999999887654 5679999998853         23333 


Q ss_pred             cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe-ecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      .-...|.+...+| ...+++|+.|+.++.||..+++.+..+ ++|.++|.++.|+|+|...|+||.||+|++|.....+.
T Consensus       222 k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  222 KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            2356788999999 899999999999999999999999986 89999999999999999999999999999999876554


Q ss_pred             C
Q 012996          345 P  345 (451)
Q Consensus       345 ~  345 (451)
                      .
T Consensus       302 ~  302 (334)
T KOG0278|consen  302 Y  302 (334)
T ss_pred             h
Confidence            4

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-36  Score=248.96  Aligned_cols=269  Identities=21%  Similarity=0.343  Sum_probs=229.5

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP   82 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~   82 (451)
                      .+++|. .|++|+|||..+..+++.+.+   |.+.|.|+.  |  +.+.+++|++| .+|+|||+++++..-. ..|.+.
T Consensus       209 kiVSGl-rDnTikiWD~n~~~c~~~L~G---HtGSVLCLq--y--d~rviisGSSD-sTvrvWDv~tge~l~tlihHcea  279 (499)
T KOG0281|consen  209 KIVSGL-RDNTIKIWDKNSLECLKILTG---HTGSVLCLQ--Y--DERVIVSGSSD-STVRVWDVNTGEPLNTLIHHCEA  279 (499)
T ss_pred             hhhccc-ccCceEEeccccHHHHHhhhc---CCCcEEeee--c--cceEEEecCCC-ceEEEEeccCCchhhHHhhhcce
Confidence            478899 999999999999888877765   557788877  5  55688888887 9999999999987644 567899


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      |..+.|+  ..++++++.|.++.+||+.+..   +.+.+.+|...|+.+.|+  .+++++++.|.+|++|++.+      
T Consensus       280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st------  349 (499)
T KOG0281|consen  280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST------  349 (499)
T ss_pred             eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc------
Confidence            9999997  6799999999999999998764   345678999999999997  66999999999999999944      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                           ..+++++.+|...|.|+.+.  +  +++++|+.|.+|++||+..|.+++.+. |+.-|.++.|  +.+.+++|+.
T Consensus       350 -----~efvRtl~gHkRGIAClQYr--~--rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY  418 (499)
T KOG0281|consen  350 -----CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY  418 (499)
T ss_pred             -----eeeehhhhcccccceehhcc--C--eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccc
Confidence                 66889999999999988763  3  899999999999999999999999988 8888999999  6788999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceE
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      ||+|++||+............-++..+..|++.|..+.|. ...+++++.|.+|.|||..++-+-
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEEcCCCCcc
Confidence            9999999998875433333334567788899999999998 577899999999999998776543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-34  Score=245.04  Aligned_cols=282  Identities=22%  Similarity=0.326  Sum_probs=244.0

Q ss_pred             CCCceEEecceEeeccCc-ccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           35 PPHGLACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~-l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      ..+.|..++  |+|...+ +|++++  -.+.+|+..+....- .......|.+++|..||++||+|...|.|+|||..+.
T Consensus        25 e~~~vssl~--fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLC--FSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEe--cCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence            447788888  9997776 444444  689999987766543 3345788999999999999999999999999998887


Q ss_pred             cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996          113 RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  191 (451)
                      ..++.+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+           ......+.+|+..|.+.+|+|..+ .+
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-----------a~v~~~l~~htDYVR~g~~~~~~~-hi  168 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-----------AYVQAELSGHTDYVRCGDISPAND-HI  168 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-----------cEEEEEecCCcceeEeeccccCCC-eE
Confidence            78899999999999999999 566788999999999999965           223557899999999999998764 78


Q ss_pred             EEEeeCCCcEEEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          192 IVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      ++||+.||.|++||++.. ..+.++.|..+|..+.+-|.|..+++++. ..+++||+-++.        +.+..+..|..
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~--------qll~~~~~H~K  239 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG--------QLLTSMFNHNK  239 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc--------eehhhhhcccc
Confidence            999999999999999987 88889999999999999999999998764 579999999765        55666667999


Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      .|+|+.+.. +..|++|+-|+.|++||+.+.+.+..+.. .+||-+++.+|+++.++.|..+|.+.+=+....
T Consensus       240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence            999999998 99999999999999999999999999876 789999999999999999999999877654443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-34  Score=266.72  Aligned_cols=269  Identities=27%  Similarity=0.464  Sum_probs=230.9

Q ss_pred             EEEeecCCCCCCeEEEECccCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC-ce-eeeec
Q 012996            3 LLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QV-EVKSL   78 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-~~-~~~~~   78 (451)
                      .+|++++ .|+.+++|+..+++  ....+   .+|...|..++  |+|+++++++++.| ++|++||+... .. .....
T Consensus       172 ~~l~~~~-~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~--fs~d~~~l~s~s~D-~tiriwd~~~~~~~~~~l~g  244 (456)
T KOG0266|consen  172 RALAAAS-SDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVA--FSPDGSYLLSGSDD-KTLRIWDLKDDGRNLKTLKG  244 (456)
T ss_pred             CeEEEcc-CCCcEEEeecccccchhhccc---cccccceeeeE--ECCCCcEEEEecCC-ceEEEeeccCCCeEEEEecC
Confidence            3588888 99999999997777  44444   56778899999  99999999999998 99999999443 33 34457


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      |...|++++|+|+++++++|+.|++|+|||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.++..  
T Consensus       245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~--  322 (456)
T KOG0266|consen  245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK--  322 (456)
T ss_pred             CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999966321  


Q ss_pred             hhhcccccceecccCCcCc--eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-ccc---ceeEEEECCCCCE
Q 012996          159 ESQRASHLYLHSFTGHTLR--ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS---VIDAIALDPAEHV  232 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~i~~~~~~~~~~~  232 (451)
                             .+...+.++...  +++++|++++  .++++++.|+.+++||+..+.....+. |..   .+.+...++.+.+
T Consensus       323 -------~~~~~~~~~~~~~~~~~~~fsp~~--~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (456)
T KOG0266|consen  323 -------LCLKLLSGAENSAPVTSVQFSPNG--KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL  393 (456)
T ss_pred             -------eeeecccCCCCCCceeEEEECCCC--cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence                   034455555544  9999999999  899999999999999999998887776 433   4455566789999


Q ss_pred             EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEec-CCEEEEEc--CCCcEEEEeCC
Q 012996          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISGS--EDGMVRVWDPI  298 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~  298 (451)
                      +++|+.|+.|++||+.+.         ..+..+.+| ...+..+.++| ..++++++  .|+.+++|...
T Consensus       394 i~sg~~d~~v~~~~~~s~---------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  394 IYSGSEDGSVYVWDSSSG---------GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEEeCCceEEEEeCCcc---------chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999999985         456788899 89999999999 99999988  78999999754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.2e-34  Score=237.77  Aligned_cols=298  Identities=17%  Similarity=0.224  Sum_probs=247.8

Q ss_pred             CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      ...|...+.+++  .+|+.+++++||.| ....+|+..++.... ...|.+.|+++.|+.+|.+||+|+.+|.|+||+..
T Consensus        60 F~~H~~svFavs--l~P~~~l~aTGGgD-D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   60 FDKHTDSVFAVS--LHPNNNLVATGGGD-DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             hhhcCCceEEEE--eCCCCceEEecCCC-ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            345668899999  99999999999998 999999999888654 45699999999999999999999999999999999


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      ++.....+...-..+.=+.|+|-+..|+.|+.||.+-+|.+           ++....+.+.+|..++++=.|.|+|  +
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i-----------p~~~~~kv~~Gh~~~ct~G~f~pdG--K  203 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI-----------PSQALCKVMSGHNSPCTCGEFIPDG--K  203 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC-----------CCcceeeEecCCCCCcccccccCCC--c
Confidence            99988888766778888999999999999999999999999           3446778899999999999999998  8


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (451)
                      .++++..||+|++||+.+++++..+.  ......++.++..+..++.|..++.+++.+..+++....... ........+
T Consensus       204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~  282 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQ  282 (399)
T ss_pred             eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccc
Confidence            99999999999999999999998887  344577888888999999999999999888777643221111 001112234


Q ss_pred             CcceeEEEEec----CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          269 SKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       269 ~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      ...+.++.+.|    -.+.|+|+-||+|.|||+...++.+.+ .|..+|+.+.|-+ ..+|++++.+|.|+.||.+++++
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL  360 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence            45555555554    568899999999999999877655544 5688899999999 78999999999999999998887


Q ss_pred             CCcc
Q 012996          345 PPPL  348 (451)
Q Consensus       345 ~~~~  348 (451)
                      ...+
T Consensus       361 ~~~y  364 (399)
T KOG0296|consen  361 KFTY  364 (399)
T ss_pred             EEEE
Confidence            5544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-35  Score=261.70  Aligned_cols=314  Identities=17%  Similarity=0.206  Sum_probs=251.3

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecc----------eEeeccCcccCCCCCCccEEEEECCCC---ceeeee
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQ----------RFLASSQLREQPSASSGSILYWSWSKP---QVEVKS   77 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----------~~~~~~~~l~~~~~d~g~i~vw~~~~~---~~~~~~   77 (451)
                      .|..+.|||+..-..+......-.|..+|+.+..          .-.|.+ .+.+++.| ++|++|++...   +...+.
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD-~TIRlW~l~~ctnn~vyrRN  421 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSD-GTIRLWDLAFCTNNQVYRRN  421 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCC-CcEEEeecccccccceeecc
Confidence            7899999999876555443333345566665540          011222 25566666 99999998741   110000


Q ss_pred             -----------------------------------cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc
Q 012996           78 -----------------------------------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY  122 (451)
Q Consensus        78 -----------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  122 (451)
                                                         .....+.+++.+|+|++||+|..-|+++||++...+....+.+|.
T Consensus       422 ils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe  501 (1080)
T KOG1408|consen  422 ILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE  501 (1080)
T ss_pred             cchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc
Confidence                                               013468999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996          123 RAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR  199 (451)
Q Consensus       123 ~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~  199 (451)
                      ..|.|+.|+.   ..++|++++.|..|.|||+..          ...++.++.+|...|+++.|...+.+..+++++.|+
T Consensus       502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r----------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADk  571 (1080)
T KOG1408|consen  502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR----------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK  571 (1080)
T ss_pred             ceeEEEeecCchhhhHhhhhccCCceEEEEeccc----------ccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence            9999999985   457899999999999999953          566788999999999999999988778999999999


Q ss_pred             cEEEEEcCC---Cceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996          200 TCKVWSLLK---GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT  273 (451)
Q Consensus       200 ~i~iwd~~~---~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  273 (451)
                      .|.+--.+.   +.....-.   ....++.++..|..+++++++.|..|+||++.+++..      +....-.+|.+...
T Consensus       572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~lI  645 (1080)
T KOG1408|consen  572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDLI  645 (1080)
T ss_pred             hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee------eeecccccCCCceE
Confidence            876544432   22211111   3467899999999999999999999999999998532      22233445778888


Q ss_pred             EEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          274 CLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       274 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      .+...| |.|+++.+.|.++.++|..+++++.+..+|...|+.+.|.+|-+.|++.+.||.|.+|.+...
T Consensus       646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            899999 999999999999999999999999999999999999999999999999999999999997653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-34  Score=255.41  Aligned_cols=246  Identities=21%  Similarity=0.337  Sum_probs=227.4

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      +.+.|.++.|+|...+++++-.+|.|.|||.++...++.+....-+|.+..|-+..+++++|+.|..|+||+..+     
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-----   86 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-----   86 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-----
Confidence            678999999999999999999999999999999999999999999999999999899999999999999999954     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECC-CCCEEEE
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYA  235 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~  235 (451)
                            ...++.|..|+..|.+++.+|..  .+++++|.|-+|++||.... .+.+.+. |...|.+++|.| |.+.+++
T Consensus        87 ------~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS  158 (794)
T KOG0276|consen   87 ------GEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS  158 (794)
T ss_pred             ------ceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence                  56788999999999999999998  79999999999999999865 5566666 888999999999 7889999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecC---CEEEEEcCCCcEEEEeCCCCceEEEeecCCCC
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG---DLLISGSEDGMVRVWDPITHNIVRMFRLAKGP  312 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (451)
                      ++-|++|++|.+...         .+..++.+|...|+|+.+-++   .+|++|+.|.+|+|||..+..|++++.+|...
T Consensus       159 ~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N  229 (794)
T KOG0276|consen  159 ASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN  229 (794)
T ss_pred             eeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc
Confidence            999999999999886         456789999999999999983   49999999999999999999999999999999


Q ss_pred             eeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       313 v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                      |+.++|+|.-..+++||.||+++||...+.++..
T Consensus       230 vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  230 VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             ceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence            9999999999999999999999999988766543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.4e-33  Score=247.05  Aligned_cols=265  Identities=29%  Similarity=0.514  Sum_probs=229.6

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~   81 (451)
                      .+|++++ .||.|.+||+.+++....+..+.   ..+..+.  |+|+++.+++++.+ |.|.+|++.++... ....|..
T Consensus        22 ~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~--~~~~~~~l~~~~~~-~~i~i~~~~~~~~~~~~~~~~~   94 (289)
T cd00200          22 KLLATGS-GDGTIKVWDLETGELLRTLKGHT---GPVRDVA--ASADGTYLASGSSD-KTIRLWDLETGECVRTLTGHTS   94 (289)
T ss_pred             CEEEEee-cCcEEEEEEeeCCCcEEEEecCC---cceeEEE--ECCCCCEEEEEcCC-CeEEEEEcCcccceEEEeccCC
Confidence            4688888 89999999999888776666543   5566667  99999999999887 99999999875443 3345667


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .+.++.|+|++.++++++.+|.|.+||+.+++....+..|...|.++.|+|++.++++++.||.|++||+++        
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------  166 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT--------  166 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc--------
Confidence            899999999999999988899999999998988888889999999999999999888888899999999953        


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-ecccceeEEEECCCCCEEEEEeCCC
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                         ......+..|...+.++.|++++  ..+++++.++.+++||++.++.+..+ .+...+.+++|+|++.++++++.+|
T Consensus       167 ---~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         167 ---GKCVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             ---cccceeEecCccccceEEECCCc--CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence               33455666888899999999987  78888989999999999998888888 5778999999999988888888899


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      .|++||+...         .....+..|...|.+++|+| +.+|++++.||.|++|+
T Consensus       242 ~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCc---------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999875         44566778999999999999 89999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-34  Score=262.04  Aligned_cols=256  Identities=17%  Similarity=0.288  Sum_probs=229.6

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...|..++|+|...+++++-.+|.|.+||.+-+.++..|..|.++|..++|+|.+.+|++||.|-.|+||+.        
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY--------   80 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY--------   80 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec--------
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                         ....++.++.+|-..|..+.|++.-  .+++++|.|.+|+||+..+++++..+. |...|.|..|+|....+++++-
T Consensus        81 ---k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL  155 (1202)
T KOG0292|consen   81 ---KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL  155 (1202)
T ss_pred             ---ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc
Confidence               4577889999999999999999987  799999999999999999999999988 8999999999999999999999


Q ss_pred             CCcEEEEEccCCCCCCCCC--------------------CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          239 DGSIYIAALNAESPSTSSY--------------------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      |.+|++||+..........                    ..-....+.||...|+-++|+| -.++++|+.|..|++|..
T Consensus       156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm  235 (1202)
T KOG0292|consen  156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM  235 (1202)
T ss_pred             cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence            9999999986543221111                    1223356789999999999999 899999999999999998


Q ss_pred             CCCc--eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996          298 ITHN--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       298 ~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~  348 (451)
                      ..-+  .+.+.++|.++|+++.|+|....+++.|.|+++++||.......+.+
T Consensus       236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence            7544  45578899999999999999999999999999999999877665555

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.6e-32  Score=251.25  Aligned_cols=272  Identities=13%  Similarity=0.143  Sum_probs=204.3

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCce--------------eeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQV--------------EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~--------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  110 (451)
                      .++++..+++++.+ ..+..|+...+..              .....|.+.|.+++|+| ++++|++|+.||.|++||+.
T Consensus        28 ~~~d~~~~~~~n~~-~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~  106 (493)
T PTZ00421         28 ALWDCSNTIACNDR-FIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP  106 (493)
T ss_pred             ccCCCCCcEeECCc-eEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence            55565555555554 5555665433221              12445889999999999 88999999999999999997


Q ss_pred             CC-------cceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          111 SG-------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       111 ~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      ++       ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+           ......+.+|...|.+++
T Consensus       107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-----------g~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421        107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-----------GKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-----------CeEEEEEcCCCCceEEEE
Confidence            65       3467789999999999999975 6899999999999999954           345667788999999999


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-ccc-ceeEEEECCCCCEEEEEe----CCCcEEEEEccCCCCCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS-VIDAIALDPAEHVFYAGS----RDGSIYIAALNAESPSTSS  256 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~  256 (451)
                      |++++  .+|++++.|+.|++||+++++.+..+. |.+ ....+.|.+++..+++++    .|+.|++||++...     
T Consensus       176 ~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-----  248 (493)
T PTZ00421        176 WNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-----  248 (493)
T ss_pred             EECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----
Confidence            99988  899999999999999999999887776 443 345678899887777654    47899999998753     


Q ss_pred             CCceeeeeecc-CCcceeEEEEec-CCEEEEEc-CCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCC
Q 012996          257 YGMHIIGSLSD-HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       257 ~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                         .++..... +...+....|++ +.+|++|+ .||.|++||+.+++++..... +..++..++|.|.-.  +-...--
T Consensus       249 ---~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~E  323 (493)
T PTZ00421        249 ---SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCE  323 (493)
T ss_pred             ---CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--cccccee
Confidence               22333322 234556667888 88888887 599999999999988876654 345788999998432  2222223


Q ss_pred             CccccccCC
Q 012996          333 PHTSSRRHG  341 (451)
Q Consensus       333 ~i~iw~~~~  341 (451)
                      ..+++++..
T Consensus       324 i~r~~~l~~  332 (493)
T PTZ00421        324 IARFYALTY  332 (493)
T ss_pred             eeEEEEecC
Confidence            345566543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-34  Score=238.17  Aligned_cols=269  Identities=19%  Similarity=0.341  Sum_probs=226.0

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC--C
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--A   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~--~   80 (451)
                      .+||+++ .|.+..+|++.....+.-.+...+|..+|..+.  ||||.+++++++.+ ..+.+||+.++.......+  .
T Consensus       237 kyLAsaS-kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdryLlaCg~~-e~~~lwDv~tgd~~~~y~~~~~  312 (519)
T KOG0293|consen  237 KYLASAS-KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRYLLACGFD-EVLSLWDVDTGDLRHLYPSGLG  312 (519)
T ss_pred             eeEeecc-CCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCeEEecCch-HheeeccCCcchhhhhcccCcC
Confidence            5899999 999999999876666555566667888999999  99999999999998 8899999999987766554  4


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc-CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ..+.+++|.|||..+++|+.|+.+..||+ +|+.+..+++-. ..|.+++.++||+++++.+.|..|++++.++...   
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---  388 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---  388 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---
Confidence            78999999999999999999999999997 566666665543 5689999999999999999999999999865211   


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c--ccceeEEEECC-CCCEEEE
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F--PSVIDAIALDP-AEHVFYA  235 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~--~~~i~~~~~~~-~~~~l~~  235 (451)
                               ..+.....+|+++.++.++  .++++.-.+..+++||+.....++.+. |  ..-+-.-||-. +..++++
T Consensus       389 ---------r~lise~~~its~~iS~d~--k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS  457 (519)
T KOG0293|consen  389 ---------RGLISEEQPITSFSISKDG--KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS  457 (519)
T ss_pred             ---------hccccccCceeEEEEcCCC--cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence                     1133345689999999988  899999999999999999877777665 2  22344445554 5689999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCC
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~  299 (451)
                      |+.|+.|+||+..++         .++..+.||...|++++|+|  ..++|+||.||+|+||....
T Consensus       458 GSED~kvyIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  458 GSEDSKVYIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCceEEEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999987         67889999999999999999  78999999999999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-34  Score=260.46  Aligned_cols=251  Identities=18%  Similarity=0.220  Sum_probs=206.9

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--------------------------------C-------------
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------------------------------G-------------  112 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------------------~-------------  112 (451)
                      .|.+.|.++.||+||+|||+||.||.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5889999999999999999999999999998754                                0             


Q ss_pred             ---------------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996          113 ---------------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (451)
Q Consensus       113 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (451)
                                     ++++.+.+|.+.|.++.|+.+ ++|++++.|.+|++|++           ....++..|. |...
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~-----------~~~~CL~~F~-Hndf  411 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHP-----------GRKECLKVFS-HNDF  411 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecC-----------CCcceeeEEe-cCCe
Confidence                           122345689999999999975 58999999999999999           4456666665 9999


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      |+|++|+|..+ +++++|+.||.|+||++...+.+.......-|++++|.|+|++.++|+.+|.+++|+....+......
T Consensus       412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            99999999876 89999999999999999998888877788999999999999999999999999999998764321100


Q ss_pred             CceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC--CeeEEEEEecCceeeeccCCCC
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNP  333 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~  333 (451)
                      ....-..-..|. .|+++.|.|  .+.+++.+.|..|+|||.++..++..|+++..  .-....|+.||++|++++.|..
T Consensus       491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~  569 (712)
T KOG0283|consen  491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW  569 (712)
T ss_pred             EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence            000000011133 899999999  44577788999999999999999999987643  4456789999999999999999


Q ss_pred             ccccccCCCC
Q 012996          334 HTSSRRHGSQ  343 (451)
Q Consensus       334 i~iw~~~~~~  343 (451)
                      |++|+.....
T Consensus       570 VYiW~~~~~~  579 (712)
T KOG0283|consen  570 VYIWKNDSFN  579 (712)
T ss_pred             EEEEeCCCCc
Confidence            9999985443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-33  Score=247.17  Aligned_cols=270  Identities=19%  Similarity=0.257  Sum_probs=231.1

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc-ccC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYR  123 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~  123 (451)
                      |+ ..+.+|++..  ..|.+|+..++.+... ..+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |..
T Consensus       185 Ws-s~n~laValg--~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~  261 (484)
T KOG0305|consen  185 WS-SANVLAVALG--QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS  261 (484)
T ss_pred             cc-cCCeEEEEec--ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence            66 4556666655  5899999998885543 33488999999999999999999999999999999999999988 999


Q ss_pred             CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i  203 (451)
                      .|-+++|.  +..+.+|+.|+.|..+|++..          ......+.+|...|..+.|++++  .++++|+.|+.+.|
T Consensus       262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~----------~~~~~~~~~H~qeVCgLkws~d~--~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  262 RVGSLAWN--SSVLSSGSRDGKILNHDVRIS----------QHVVSTLQGHRQEVCGLKWSPDG--NQLASGGNDNVVFI  327 (484)
T ss_pred             eeEEEecc--CceEEEecCCCcEEEEEEecc----------hhhhhhhhcccceeeeeEECCCC--CeeccCCCccceEe
Confidence            99999998  678999999999999999762          12222488999999999999999  89999999999999


Q ss_pred             EEcCCCceeeeee-cccceeEEEECC-CCCEEEEE--eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          204 WSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       204 wd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      ||.....++..+. |...|.+++|+| ....||+|  +.|+.|++||..++.         .+... .-...|++|.|++
T Consensus       328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~v-dtgsQVcsL~Wsk  397 (484)
T KOG0305|consen  328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------RIDSV-DTGSQVCSLIWSK  397 (484)
T ss_pred             ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------Eeccc-ccCCceeeEEEcC
Confidence            9997777777665 999999999999 67788886  468999999999864         23333 3467999999999


Q ss_pred             -CCEEEEE--cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          280 -GDLLISG--SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       280 -~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                       .+-|+++  ..++.|.||++.+.+++..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  398 KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence             5445543  45778999999999999999999999999999999999999999999999998765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=219.03  Aligned_cols=246  Identities=18%  Similarity=0.268  Sum_probs=215.4

Q ss_pred             eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        74 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .....+.++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            34455789999999999999999999999999999999999999999999999999999999999999999999999955


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--ceeeeee-cccceeEEEECCCC
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAE  230 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~  230 (451)
                                 .+..+.+.+|.+.|+.++|+.+.  ..+++|+.|..+++||.++.  ++++.+. ....|.++..  .+
T Consensus        91 -----------Gkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~  155 (307)
T KOG0316|consen   91 -----------GKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AE  155 (307)
T ss_pred             -----------CeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cc
Confidence                       66788999999999999999887  89999999999999999865  5566665 5667877777  56


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      ..+++|+.||+++.||++.+..         ...  .-..+|+++.|++ ++..++++.|+++++.|-.+|++++.+++|
T Consensus       156 heIvaGS~DGtvRtydiR~G~l---------~sD--y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTL---------SSD--YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             cEEEeeccCCcEEEEEeeccee---------ehh--hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence            7899999999999999998742         222  2356999999999 999999999999999999999999999999


Q ss_pred             CCCe--eEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996          310 KGPV--NNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       310 ~~~v--~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~  345 (451)
                      ...-  ...+++.....+++||.||.+++|++......
T Consensus       225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             ccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence            8753  44567777889999999999999998765443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-32  Score=275.03  Aligned_cols=260  Identities=20%  Similarity=0.281  Sum_probs=220.2

Q ss_pred             ccEEEEECCCCceeee------ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----c----ceeeeccccCCee
Q 012996           61 GSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----R----LLKKWHAHYRAVT  126 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~  126 (451)
                      |.+++|+.........      ..|...|.+++|+|+|++||+|+.|+.|+||++...    .    ....+. +...|.
T Consensus       458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~  536 (793)
T PLN00181        458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS  536 (793)
T ss_pred             hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence            7788888775544322      226789999999999999999999999999997532    1    122233 356789


Q ss_pred             EEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEE
Q 012996          127 CLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVW  204 (451)
Q Consensus       127 ~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iw  204 (451)
                      +++|++ ++.+|++++.||.|++||+.+           ...+..+.+|...|++++|++ ++  .+|++|+.||.|++|
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~-----------~~~~~~~~~H~~~V~~l~~~p~~~--~~L~Sgs~Dg~v~iW  603 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVAR-----------SQLVTEMKEHEKRVWSIDYSSADP--TLLASGSDDGSVKLW  603 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCC-----------CeEEEEecCCCCCEEEEEEcCCCC--CEEEEEcCCCEEEEE
Confidence            999987 578999999999999999954           445677889999999999996 45  799999999999999


Q ss_pred             EcCCCceeeeeecccceeEEEEC-CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996          205 SLLKGRLLRNIVFPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (451)
Q Consensus       205 d~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l  283 (451)
                      |++++..+..+.....+.++.|+ +++.+|++|+.||.|++||++...        .++..+.+|...|+++.|.++.+|
T Consensus       604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~~~~l  675 (793)
T PLN00181        604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVDSSTL  675 (793)
T ss_pred             ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeCCCEE
Confidence            99999988888877789999995 579999999999999999998753        245567789999999999878899


Q ss_pred             EEEcCCCcEEEEeCCC------CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          284 ISGSEDGMVRVWDPIT------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       284 ~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      ++++.|++|++||+..      ..++.++.+|...+..++|+|++.+|++|+.|+.+++|+....
T Consensus       676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999999999874      3678899999999999999999999999999999999997643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5.4e-34  Score=239.05  Aligned_cols=276  Identities=19%  Similarity=0.273  Sum_probs=233.2

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      |...+..+.  |.++...|+++|.| ..|++|+.........   ....++|+.+.|.++++++++++.|+.+++|++.+
T Consensus       174 h~gev~~v~--~l~~sdtlatgg~D-r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~  250 (459)
T KOG0288|consen  174 HEGEVHDVE--FLRNSDTLATGGSD-RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS  250 (459)
T ss_pred             cccccceeE--EccCcchhhhcchh-hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence            334445555  99999999999999 9999999987663322   33467899999999999999999999999999999


Q ss_pred             CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  191 (451)
                      .+...++.+|.+.|+++.|......+++|+.|.+|+.||+..           ..+..++. ....+.+|+.+  +  ..
T Consensus       251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-----------~~C~kt~l-~~S~cnDI~~~--~--~~  314 (459)
T KOG0288|consen  251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-----------AYCSKTVL-PGSQCNDIVCS--I--SD  314 (459)
T ss_pred             hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-----------hheecccc-ccccccceEec--c--ee
Confidence            999999999999999999988766699999999999999954           33333322 23455566655  2  67


Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc----
Q 012996          192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD----  267 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----  267 (451)
                      +++|..|+.|++||+++..+...+...+.|+++..++++..+.+++.|..+.+.|+++...         ...+..    
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI---------~~~~sA~g~k  385 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI---------RQTFSAEGFK  385 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE---------EEEeeccccc
Confidence            8999999999999999999999999889999999999999999999999999999998642         222221    


Q ss_pred             CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC--eeEEEEEecCceeeeccCCCCccccc
Q 012996          268 HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP--VNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       268 ~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      .....+.+.||| +.|+++||.||.|+||++.++++...+.....+  |++++|+|.|.+|++++.++.+.+|.
T Consensus       386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            123488999999 999999999999999999999999988866554  99999999999999999999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-33  Score=221.14  Aligned_cols=289  Identities=15%  Similarity=0.212  Sum_probs=237.9

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      .+|.++++.+.  |..+|.+|.+++.| .++.||-..+++.. ....|.+.|.|++.+.+.+++++|+.|.++++||+.+
T Consensus         7 ~GHERplTqiK--yN~eGDLlFscaKD-~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    7 QGHERPLTQIK--YNREGDLLFSCAKD-STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccCccccceEE--ecCCCcEEEEecCC-CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            35778888888  99999999999999 99999987555544 5577999999999999999999999999999999999


Q ss_pred             CcceeeeccccCCeeEEEEccCCcEEEEeeC-----CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      |+.+..++ ...+|..+.|+++|++++.+..     .+.|.++|++....    ......+...+..+...++.+.|.+.
T Consensus        84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~----~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS----DIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh----hhcccCceEEecCCccceeeeeeccc
Confidence            99999987 5678999999999998876654     46799999975322    12234456667778899999999998


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeee-e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNI-V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                      +  ..|++|..||.|.+||++++.....- . |...|+.++++|+..++++++.|.+-++||..+.         ..+.+
T Consensus       159 ~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---------~v~Kt  227 (327)
T KOG0643|consen  159 G--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---------EVLKT  227 (327)
T ss_pred             C--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---------eeEEE
Confidence            8  89999999999999999998655443 3 8889999999999999999999999999999985         44555


Q ss_pred             eccCCcceeEEEEec-CCEEEEEc-CCCc-------------EEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          265 LSDHSKAVTCLAYST-GDLLISGS-EDGM-------------VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       265 ~~~~~~~v~~~~~~~-~~~l~s~~-~dg~-------------i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      +. ...||++.+++| .+.++.|+ .+..             -++|++...+.+..+++|-+||++++|+|+|+..++|+
T Consensus       228 y~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  228 YT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             ee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence            54 467999999999 66555554 3321             23333334456778889999999999999999999999


Q ss_pred             CCCCccccccCC
Q 012996          330 FSNPHTSSRRHG  341 (451)
Q Consensus       330 ~d~~i~iw~~~~  341 (451)
                      .||.|++.-+..
T Consensus       307 EDG~VR~h~Fd~  318 (327)
T KOG0643|consen  307 EDGYVRLHHFDS  318 (327)
T ss_pred             CCceEEEEEecc
Confidence            999999886553

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.8e-32  Score=227.53  Aligned_cols=268  Identities=21%  Similarity=0.333  Sum_probs=219.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----eee
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKS   77 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----~~~   77 (451)
                      -.+.||+ .||.+++||. .|+....+.+|.++...+..+.  -.+....+++++.| .++++|.++.+...     ...
T Consensus       116 ~~Iltgs-YDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~--~n~~~~~fvsas~D-qtl~Lw~~~~~~~~~~~~~~~~  190 (423)
T KOG0313|consen  116 KWILTGS-YDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVI--KNSSSCLFVSASMD-QTLRLWKWNVGENKVKALKVCR  190 (423)
T ss_pred             ceEEEee-cCCeeEEEec-CCceEEEEecCCcceeeeEEEe--cCCccceEEEecCC-ceEEEEEecCchhhhhHHhHhc
Confidence            3578999 9999999995 5999999998887766555433  23333458888888 99999999876643     223


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-------------------------CcceeeeccccCCeeEEEEcc
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-------------------------GRLLKKWHAHYRAVTCLVFSE  132 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~  132 (451)
                      +|...|.+++..++|..+++|+.|..|.||+..+                         +.++.++.+|.++|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            7899999999999999999999999999999321                         234566789999999999997


Q ss_pred             CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-
Q 012996          133 DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-  211 (451)
Q Consensus       133 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  211 (451)
                       ...+++++.|.+|+.||+.++           ....++. ....+.++..++..  .+|++|+.|..+++||.+++.- 
T Consensus       271 -~~v~yS~SwDHTIk~WDletg-----------~~~~~~~-~~ksl~~i~~~~~~--~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETG-----------GLKSTLT-TNKSLNCISYSPLS--KLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             -CCceEeecccceEEEEEeecc-----------cceeeee-cCcceeEeeccccc--ceeeecCCCCceeecCCCCCCCc
Confidence             667999999999999999663           2222333 34577888888876  8999999999999999998632 


Q ss_pred             --eeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEc
Q 012996          212 --LRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS  287 (451)
Q Consensus       212 --~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~  287 (451)
                        .+.+. |.+-|.++.|+| +...|++|+.|+++++||++...        .++..+.+|...|.++.|+.+.++++||
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~~~~~IvSGG  407 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWNEGGLIVSGG  407 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEeccCCceEEecc
Confidence              22333 888999999999 45668889999999999999975        5788999999999999999888999999


Q ss_pred             CCCcEEEEeCC
Q 012996          288 EDGMVRVWDPI  298 (451)
Q Consensus       288 ~dg~i~iwd~~  298 (451)
                      .|.+|+|+...
T Consensus       408 aD~~l~i~~~~  418 (423)
T KOG0313|consen  408 ADNKLRIFKGS  418 (423)
T ss_pred             CcceEEEeccc
Confidence            99999999753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=229.37  Aligned_cols=268  Identities=22%  Similarity=0.364  Sum_probs=233.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecC-----CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSC-----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-   76 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-   76 (451)
                      .+|++|+ .||.|.|||..+|+..+.++-.     .-+...|.|+.  |+.|...+|+|+.| |.|+||.+.++++..+ 
T Consensus       226 qyLvsgS-vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~--FSRDsEMlAsGsqD-GkIKvWri~tG~ClRrF  301 (508)
T KOG0275|consen  226 QYLVSGS-VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS--FSRDSEMLASGSQD-GKIKVWRIETGQCLRRF  301 (508)
T ss_pred             ceEeecc-ccceeeeehhccchhhhhhhhhhhcceeecccceEEEe--ecccHHHhhccCcC-CcEEEEEEecchHHHHh
Confidence            5899999 9999999999999987655422     23567899999  99999999999999 9999999999998755 


Q ss_pred             -ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           77 -SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        77 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                       ..|...|+|+.|+.|+..+++++.|.+++|.-+.+|+++..+++|...|+...|++||.++++++.||+|++|+..+. 
T Consensus       302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt-  380 (508)
T KOG0275|consen  302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT-  380 (508)
T ss_pred             hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch-
Confidence             358899999999999999999999999999999999999999999999999999999999999999999999999663 


Q ss_pred             hhhhhhcccccceeccc--CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECCC
Q 012996          156 EECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPA  229 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~  229 (451)
                                .++.++.  +...+|.++...|... ..++++...++++|.++ .|+.++.+.    ..+...+.+.+|.
T Consensus       381 ----------eC~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  381 ----------ECLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             ----------hhhhhccCCCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence                      3333333  3456778887777654 78889999999999998 578888876    3456778889999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      |.++++.+.|+.++.|...++         ..-.++.-|...|..++-+| .+.|++-+.||.+++|.
T Consensus       449 GewiYcigED~vlYCF~~~sG---------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSG---------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecC---------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999887         44567778999999999999 99999999999999995

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=8.8e-33  Score=258.73  Aligned_cols=284  Identities=19%  Similarity=0.265  Sum_probs=237.0

Q ss_pred             ceEEecceEeeccCcccCCC--CCCccEEEEECCCCc-------------eeeeecCCCCeeEEEECCCCcEEEEeccCC
Q 012996           38 GLACVGQRFLASSQLREQPS--ASSGSILYWSWSKPQ-------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSG  102 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~--~d~g~i~vw~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  102 (451)
                      .|..++  .+|+|..+|++|  .| |.+++|+.+.-.             ......|.+.|.|+.|+|||.+||+|+.|+
T Consensus        15 ~IfSId--v~pdg~~~aTgGq~~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   15 SIFSID--VHPDGVKFATGGQVLD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             eEEEEE--ecCCceeEecCCcccc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            378888  999999999999  77 888899875211             112334789999999999999999999999


Q ss_pred             CEEEEEcCC------------------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccc
Q 012996          103 DIYMWEVAS------------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRAS  164 (451)
Q Consensus       103 ~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  164 (451)
                      .|.||+...                  .+....+.+|...|..++|+|++.+|++++.|++|.+|+..+           
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-----------  160 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-----------  160 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-----------
Confidence            999999762                  135667889999999999999999999999999999999965           


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-------cccceeEEEECCCCCEEEEEe
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~  237 (451)
                      ...+..+.+|.+.|.++.|.|-|  ++|++-+.|++|++|+..+....+.+.       .......+.|+|||.+|++..
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ceeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            46788899999999999999998  999999999999999987766665554       234578899999999999874


Q ss_pred             C----CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec------CC------------EEEEEcCCCcEEEE
Q 012996          238 R----DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST------GD------------LLISGSEDGMVRVW  295 (451)
Q Consensus       238 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~------------~l~s~~~dg~i~iw  295 (451)
                      .    -..+.|.+-.+         +..-..+.||.+++.++.|+|      ..            .+|+|+.|++|.||
T Consensus       239 A~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             hccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence            3    22566666544         355668889999999999987      12            68899999999999


Q ss_pred             eCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          296 DPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       296 d~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                      .....+++..+. ....+|.+++|+|||..|..+|.||+|.+..+....+..
T Consensus       310 ~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~  361 (942)
T KOG0973|consen  310 NTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV  361 (942)
T ss_pred             ecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence            998888877654 345699999999999999999999999999988665533

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-33  Score=232.25  Aligned_cols=281  Identities=16%  Similarity=0.230  Sum_probs=237.0

Q ss_pred             CCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           33 ASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      .+|..+|.|++  =+|.. ..+++|+.| |.|++||+....+... ..|.+.|..|++..  ..+++++.|.+|+.|.+.
T Consensus        63 ~gHrdGV~~la--khp~~ls~~aSGs~D-G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   63 DGHRDGVSCLA--KHPNKLSTVASGSCD-GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             cccccccchhh--cCcchhhhhhccccC-ceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            57889999999  88877 778888888 9999999987665544 55888999999986  667888999999999975


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      - .++.++.+ ...+..+.-+..+..++|+|.  .|.|||.           ....++..+.-....|.++.|+|... .
T Consensus       138 ~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~-----------~R~~Pv~smswG~Dti~svkfNpvET-s  201 (433)
T KOG0268|consen  138 G-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDE-----------QRDNPVSSMSWGADSISSVKFNPVET-S  201 (433)
T ss_pred             C-Ccceeeec-cccccccccccccccccccCc--eeeeccc-----------ccCCccceeecCCCceeEEecCCCcc-h
Confidence            4 46666643 355677777767778999987  4999998           34556777777788899999999875 7


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      +|++++.|+.|.+||++.+.++..+.....-+.++|+|.+-.|++|+.|..++.||++...        .++....+|.+
T Consensus       202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--------~p~~v~~dhvs  273 (433)
T KOG0268|consen  202 ILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--------RPLNVHKDHVS  273 (433)
T ss_pred             heeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc--------ccchhhcccce
Confidence            8888989999999999999999999988889999999988889999999999999999876        77889999999


Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      .|.++.||| |.-|++||.|.+|+||.++.+..-.... --...|.++.||.|.+|+++||+|+.|++|+....
T Consensus       274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            999999999 9999999999999999998765433221 11247999999999999999999999999997643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-32  Score=241.99  Aligned_cols=267  Identities=19%  Similarity=0.290  Sum_probs=231.5

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ec-CC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SL-PA   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~-~~   80 (451)
                      +.||+|.  ...|.+|+..++....-...+   ...|+++.  |+++|.+||+|..+ |.|.|||......... .. |.
T Consensus       189 n~laVal--g~~vylW~~~s~~v~~l~~~~---~~~vtSv~--ws~~G~~LavG~~~-g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  189 NVLAVAL--GQSVYLWSASSGSVTELCSFG---EELVTSVK--WSPDGSHLAVGTSD-GTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             CeEEEEe--cceEEEEecCCCceEEeEecC---CCceEEEE--ECCCCCEEEEeecC-CeEEEEehhhccccccccCCcC
Confidence            3566665  458999999998865444332   68899999  99999999999999 9999999876554432 33 78


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ..|-+++|.  +..+.+|+.++.|..+|++..+.... +.+|...|..++|++|+.+|++|+.|+.+.|||..       
T Consensus       261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-------  331 (484)
T KOG0305|consen  261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-------  331 (484)
T ss_pred             ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC-------
Confidence            999999998  77899999999999999998876655 88999999999999999999999999999999993       


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-  236 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  236 (451)
                          ...+...+..|...|..++|+|-.. .+||+|+  .|++|++||..++..+..+...+.|.++.|++..+-|+++ 
T Consensus       332 ----~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  332 ----SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             ----CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec
Confidence                4556788899999999999999865 6888865  6999999999999999999999999999999988777664 


Q ss_pred             -eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996          237 -SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       237 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~  300 (451)
                       ..++.|.+|+..+.         ..+..+.+|...|..++++| +..+++|+.|.++++|++-..
T Consensus       407 G~s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  407 GYSENQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCCcEEEEecccc---------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence             56779999999884         66788999999999999999 999999999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.2e-32  Score=231.63  Aligned_cols=291  Identities=24%  Similarity=0.321  Sum_probs=234.2

Q ss_pred             ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---e-e---------------ecCCCCeeEEEECC
Q 012996           30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---V-K---------------SLPAEPIKPIAANS   90 (451)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---~-~---------------~~~~~~v~~~~~~~   90 (451)
                      ..+..|...+.+++  ++|++++.++++.+ |+|.=|++.++...   . .               ..|...+.+++.++
T Consensus       136 ~~~~~H~~s~~~va--ls~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVA--LSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             eeeccccCcceEEE--eeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            34456778899999  99999999999999 99999998765521   0 0               14667899999999


Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                      ||+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|++           .....+.+
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~-----------~~~s~vet  281 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI-----------DQLSYVET  281 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEeh-----------hHhHHHHH
Confidence            9999999999999999999999999999999999999999988888999999999999999           44567888


Q ss_pred             ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      +.+|...|.+|....-.  +.+.+|+.|+++++|++.....+....+.+.+.|++|- +...|++|+.+|.|.+|++...
T Consensus       282 lyGHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HhCCccceeeechhccc--ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeeccc
Confidence            99999999999877665  66667779999999999665555545577789999986 4567899999999999999887


Q ss_pred             CCCCCCCCceeeeee---ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC----ceEEEeecCCCCeeEEEEEecC
Q 012996          251 SPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      ++.......+.+...   ..+..+|++++..| .+++++|+.+|.|++|-+..+    +++..+. -.+-|+.|+|+++|
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sg  437 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSG  437 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCC
Confidence            654332211111111   22335899999999 999999999999999998876    4556665 47889999999999


Q ss_pred             ceeeec-cCCCCccccc
Q 012996          323 LYLNLG-SFSNPHTSSR  338 (451)
Q Consensus       323 ~~l~~~-s~d~~i~iw~  338 (451)
                      +++++| +....+-=|.
T Consensus       438 k~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  438 KRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             CEEEEecccccccceee
Confidence            966554 4444444443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.4e-32  Score=218.28  Aligned_cols=280  Identities=18%  Similarity=0.283  Sum_probs=220.4

Q ss_pred             eeecCCCCCCceEEecceEeeccCccc-CCCCCCccEEEEECCCC-cee--eeecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996           28 RYKSCASPPHGLACVGQRFLASSQLRE-QPSASSGSILYWSWSKP-QVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGD  103 (451)
Q Consensus        28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~g~i~vw~~~~~-~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  103 (451)
                      .+.....+...|.+++  |||....++ +++.| |+|++|+++.. ...  ....|.++|.+++|+.||..+++|+.|+.
T Consensus        19 d~ev~~pP~DsIS~l~--FSP~~~~~~~A~SWD-~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~   95 (347)
T KOG0647|consen   19 DYEVPNPPEDSISALA--FSPQADNLLAAGSWD-GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ   95 (347)
T ss_pred             ceecCCCcccchheeE--eccccCceEEecccC-CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence            3444456778899999  999655555 56666 99999999863 332  22347899999999999999999999999


Q ss_pred             EEEEEcCCCcceeeeccccCCeeEEEEccCCc--EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (451)
                      +++||+.++ .+..+..|.++|.++.|-+...  .|+||+.|.+|+.||.+.           ..++.++. -...++++
T Consensus        96 ~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-----------~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   96 AKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-----------SNPVATLQ-LPERVYAA  162 (347)
T ss_pred             eEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC-----------CCeeeeee-ccceeeeh
Confidence            999999999 4567778999999999987554  899999999999999965           33333333 34456665


Q ss_pred             EEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-ee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (451)
Q Consensus       182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (451)
                      ..-.    .+++.+..++.|.+|+++.+..... +.  ..-.+.|++..++....+.|+-+|++.+..++.+.+ ...+.
T Consensus       163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFt  237 (347)
T KOG0647|consen  163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFT  237 (347)
T ss_pred             hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCcee
Confidence            5433    5788999999999999977643322 22  566799999999999899999999999999988654 33333


Q ss_pred             ceeeeee---ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996          259 MHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       259 ~~~~~~~---~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (451)
                      +++.+.-   .+.-..|++|+|+| ...|+|+|.||++.+||-.....+++.+.|..+|++..|+.+|.++|.+
T Consensus       238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            3332221   11124688999999 9999999999999999999999999999999999999999999999765

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.7e-31  Score=202.96  Aligned_cols=280  Identities=20%  Similarity=0.262  Sum_probs=230.0

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCC--------------Ccee--eeecCCCCeeEEEECCCCcEEEEe
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK--------------PQVE--VKSLPAEPIKPIAANSHGTYIAGG   98 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~--------------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~   98 (451)
                      ....|..++  |+|.|.+.++++.. .+++|.....              +.+.  ....|.+.|.|.+|+|+|.++++|
T Consensus        31 dsqairav~--fhp~g~lyavgsns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg  107 (350)
T KOG0641|consen   31 DSQAIRAVA--FHPAGGLYAVGSNS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG  107 (350)
T ss_pred             chhheeeEE--ecCCCceEEeccCC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence            446677888  99999999999988 9999875421              1111  223478899999999999999999


Q ss_pred             ccCCCEEEEEcCCCcc-----eeeeccccCCeeEEEEccC----CcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccce
Q 012996           99 GQSGDIYMWEVASGRL-----LKKWHAHYRAVTCLVFSED----GSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYL  168 (451)
Q Consensus        99 ~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~  168 (451)
                      +.|..|++..++...+     -..+.-|.+.|..++|..+    +..|++++. |..|.+-|.           ......
T Consensus       108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc-----------~~g~~~  176 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC-----------GRGQGF  176 (350)
T ss_pred             CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec-----------CCCCcc
Confidence            9999999987654432     2356779999999999653    456666554 555666565           456678


Q ss_pred             ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---c-----ccceeEEEECCCCCEEEEEeCCC
Q 012996          169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---F-----PSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       169 ~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                      +.+.+|++.|.++ +++++  ..+++|+.|.+|++||++-..++..+.   +     .+.|.+++..|.|++|++|..|.
T Consensus       177 ~a~sghtghilal-yswn~--~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds  253 (350)
T KOG0641|consen  177 HALSGHTGHILAL-YSWNG--AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS  253 (350)
T ss_pred             eeecCCcccEEEE-EEecC--cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence            8899999999887 45666  799999999999999999988887765   2     35799999999999999999999


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----CceEEEeecCCCCeeE
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRLAKGPVNN  315 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~  315 (451)
                      ...+||++.+         +.++.+..|...|.++.|+| ..|+++|+.|..|++-|+..    .-++.....|...+..
T Consensus       254 sc~lydirg~---------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~  324 (350)
T KOG0641|consen  254 SCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ  324 (350)
T ss_pred             ceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence            9999999987         66889999999999999999 89999999999999999753    2234456678999999


Q ss_pred             EEEEecCceeeeccCCCCccccccC
Q 012996          316 ILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       316 l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +.|+|..-.+++.+.|.++.+|...
T Consensus       325 ~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  325 CRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEecCccceeeeccCcceEEEeccC
Confidence            9999999999999999999999865

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=211.84  Aligned_cols=271  Identities=15%  Similarity=0.227  Sum_probs=231.2

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee---eecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEc
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEV  109 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~  109 (451)
                      +|...+..++  |..+|..|++++.| +++.+|+++......   ...|.+.|-.++|+| ....+++++.|..|++||+
T Consensus        18 ~~~~~v~Sv~--wn~~g~~lasgs~d-ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   18 GHVQKVHSVA--WNCDGTKLASGSFD-KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             hhhhcceEEE--EcccCceeeecccC-CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            4556667777  99999999999999 999999998765432   245778899999988 5678999999999999999


Q ss_pred             CCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          110 ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                      +++++........+.+ -+.|+|+|.+++.++.|..|.+.|.++.           ..... ......+..++|+.++  
T Consensus        95 r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-----------~~~~~-~~~~~e~ne~~w~~~n--  159 (313)
T KOG1407|consen   95 RSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-----------KIVNE-EQFKFEVNEISWNNSN--  159 (313)
T ss_pred             ccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-----------ceeeh-hcccceeeeeeecCCC--
Confidence            9999998886555554 5789999999999999999999999652           22222 2234566778888555  


Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (451)
                      .+++.....|+|.|......+++..+. |+....|+.|+|+|++|++|+.|..+.+||+...         -+...+..+
T Consensus       160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRl  230 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------ICERCISRL  230 (313)
T ss_pred             CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---------hhheeeccc
Confidence            677777778999999999999999998 9999999999999999999999999999999875         556778889


Q ss_pred             CcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       269 ~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      .-+|..+.||. |++||+||.|..|-|=++.+|..+..++. .++...++|+|...+||.+..|.
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC-EGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec-cCCceeEEecCCCceeeEEecCC
Confidence            99999999999 99999999999999999999999999974 88999999999999999887653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-32  Score=219.27  Aligned_cols=239  Identities=23%  Similarity=0.365  Sum_probs=210.4

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc--EEEEeeCCCcEEEeeCcchh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~  155 (451)
                      .|..+|++++.+  +.++|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+.    
T Consensus        41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~----  114 (362)
T KOG0294|consen   41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV----  114 (362)
T ss_pred             ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc----
Confidence            478899999996  89999999999999999999999999999999999999998664  8999999999999999    


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (451)
                             .....+.++.+|.+.|+.++++|.+  .+.++.+.|+.++.||+-+|+.-...+.......+.|+|.|.+|++
T Consensus       115 -------~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  115 -------GSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             -------CCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence                   5678899999999999999999998  8999999999999999999998887777777777999999999998


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (451)
                      +..+ .|-+|.+.+...         ...+ .....+.++.|-.+..|++|+.|+.|.+||..+..++..+.+|...|-+
T Consensus       186 ~~~~-~i~i~q~d~A~v---------~~~i-~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~  254 (362)
T KOG0294|consen  186 SGRN-KIDIYQLDNASV---------FREI-ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD  254 (362)
T ss_pred             Eecc-EEEEEecccHhH---------hhhh-hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence            8765 588888877531         1111 1224577777766899999999999999999999999999999999999


Q ss_pred             EEEE--ecCceeeeccCCCCccccccCCC
Q 012996          316 ILVV--RRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       316 l~~s--~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      +.+-  |++.+|+++|.||.|++||++..
T Consensus       255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  255 IASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9854  67899999999999999998854

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-31  Score=212.33  Aligned_cols=277  Identities=19%  Similarity=0.239  Sum_probs=233.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      -+|.+++ .|.++.||-...|+.+.++.+|.   ..|.|++  ..-+.+++++++.| .++++||+.++++........+
T Consensus        23 DLlFsca-KD~~~~vw~s~nGerlGty~GHt---GavW~~D--id~~s~~liTGSAD-~t~kLWDv~tGk~la~~k~~~~   95 (327)
T KOG0643|consen   23 DLLFSCA-KDSTPTVWYSLNGERLGTYDGHT---GAVWCCD--IDWDSKHLITGSAD-QTAKLWDVETGKQLATWKTNSP   95 (327)
T ss_pred             cEEEEec-CCCCceEEEecCCceeeeecCCC---ceEEEEE--ecCCcceeeecccc-ceeEEEEcCCCcEEEEeecCCe
Confidence            4788999 99999999988999999998654   7799999  88899999999999 9999999999999998888999


Q ss_pred             eeEEEECCCCcEEEEecc-----CCCEEEEEcC-------CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           83 IKPIAANSHGTYIAGGGQ-----SGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      |..+.|+++|++++....     .+.|.++|++       +.++...+..+...++..-|.|-+++|++|..||.|.+||
T Consensus        96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d  175 (327)
T KOG0643|consen   96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD  175 (327)
T ss_pred             eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence            999999999998877643     4679999998       3456777888889999999999999999999999999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      ++++          ...+.....|...|++++++++.  .++++++.|.+-++||.++.+.+.++....++++.+++|..
T Consensus       176 a~~g----------~~~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~  243 (327)
T KOG0643|consen  176 ARTG----------KELVDSDEEHSSKINDLQFSRDR--TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL  243 (327)
T ss_pred             cccC----------ceeeechhhhccccccccccCCc--ceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence            9663          34566677899999999999998  89999999999999999999999999999999999999988


Q ss_pred             CEEEEEeCCCcEEEEEc--cCCCCCCCCC---CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          231 HVFYAGSRDGSIYIAAL--NAESPSTSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~--~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      ..++.|+.....-+--.  +.++.....+   -.+.+..+++|-++|++++|+| |...++|+.||.|++.-..
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            87777764433222222  2221111110   0134677899999999999999 9999999999999998554

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=9.6e-31  Score=242.69  Aligned_cols=274  Identities=11%  Similarity=0.131  Sum_probs=198.7

Q ss_pred             CCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCc--------ceeeeccccCCe
Q 012996           56 PSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR--------LLKKWHAHYRAV  125 (451)
Q Consensus        56 ~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v  125 (451)
                      ||.. +.|++|+....... ....|.+.|.+++|+|+ +++|++|+.||.|+|||+.++.        .+..+.+|...|
T Consensus        50 GG~~-gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLI-GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCce-eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            4444 89999998665433 33568899999999996 7899999999999999997642        344678899999


Q ss_pred             eEEEEccCCcE-EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEE
Q 012996          126 TCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVW  204 (451)
Q Consensus       126 ~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iw  204 (451)
                      .+++|+|++.. |++++.|+.|++||++++           .....+. |...|.+++|++++  .+|++++.|+.|+||
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-----------~~~~~i~-~~~~V~SlswspdG--~lLat~s~D~~IrIw  194 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENE-----------KRAFQIN-MPKKLSSLKWNIKG--NLLSGTCVGKHMHII  194 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCC-----------cEEEEEe-cCCcEEEEEECCCC--CEEEEEecCCEEEEE
Confidence            99999998875 578999999999999652           2233333 56789999999998  899999999999999


Q ss_pred             EcCCCceeeeee-cccceeE-----EEECCCCCEEEEEeCCC----cEEEEEccCCCCCCCCCCceeeee--eccCCcce
Q 012996          205 SLLKGRLLRNIV-FPSVIDA-----IALDPAEHVFYAGSRDG----SIYIAALNAESPSTSSYGMHIIGS--LSDHSKAV  272 (451)
Q Consensus       205 d~~~~~~~~~~~-~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v  272 (451)
                      |+++++.+..+. |.+.+.+     ..|++++.+|++++.++    .|++||++...        .++..  +..+.+.+
T Consensus       195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L  266 (568)
T PTZ00420        195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPL  266 (568)
T ss_pred             ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccce
Confidence            999999888776 5544332     34568989999988774    79999998643        22333  33333444


Q ss_pred             eEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCccc
Q 012996          273 TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD  349 (451)
Q Consensus       273 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~  349 (451)
                      ......+ +.++++|+.|++|++|++..+. +..+.  .+..++.+++|.|+..  +-...--..|++.+.......|+.
T Consensus       267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~--~dv~~cEi~R~~kl~~~~~i~pis  343 (568)
T PTZ00420        267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI--CDVYKCEIGRVYKNENNSSIRPIS  343 (568)
T ss_pred             EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc--cCchhhhHhHHhhhcCCCeEEEEE
Confidence            4444445 8899999999999999998764 33333  2457899999999643  222222345667665433344444


Q ss_pred             cccccc
Q 012996          350 KYVTSA  355 (451)
Q Consensus       350 ~~~~~~  355 (451)
                      -.++..
T Consensus       344 f~vPRk  349 (568)
T PTZ00420        344 FYVPRK  349 (568)
T ss_pred             EEeccC
Confidence            444444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-32  Score=215.55  Aligned_cols=264  Identities=15%  Similarity=0.254  Sum_probs=217.8

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCCCCeeEEEE
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAA   88 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~~~v~~~~~   88 (451)
                      ..|.+.|-++..++-+..+.... -..++..++  |++.....+.++..||.+++||...+..++.  ..|...|.++.|
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdw  112 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYD-TEDGLFDVA--WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDW  112 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeee-cccceeEee--ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecc
Confidence            36889999987666555554332 457788888  9987665544444349999999765554433  448899999999


Q ss_pred             CC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhccccc
Q 012996           89 NS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHL  166 (451)
Q Consensus        89 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  166 (451)
                      ++ ++..+++++.|++|++|+...++.+.++.+|...|....|+| .++.+++++.||.+++||++.          ..+
T Consensus       113 n~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~----------~gk  182 (311)
T KOG0277|consen  113 NTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS----------PGK  182 (311)
T ss_pred             ccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC----------CCc
Confidence            98 566778889999999999999999999999999999999999 788999999999999999965          233


Q ss_pred             ceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEEEECC-CCCEEEEEeCCCcEE
Q 012996          167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIY  243 (451)
Q Consensus       167 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~  243 (451)
                      .+. +..|...|.++.|+.-.. +.++||+.|+.|++||+++-+ ++..+. |.-.|..+.|+| ....|++++.|-+++
T Consensus       183 ~~~-i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  183 FMS-IEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             eeE-EEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence            333 788999999999987654 899999999999999998754 455555 788999999999 467889999999999


Q ss_pred             EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeC
Q 012996          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~  297 (451)
                      +||...+.        ..+.+...|+.-|..+.|++  +.++|+++.|+.+.||+.
T Consensus       261 iw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  261 IWDPERQD--------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ecccccch--------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99998664        44667778999999999999  899999999999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-31  Score=242.57  Aligned_cols=318  Identities=18%  Similarity=0.301  Sum_probs=267.4

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC-CC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EP   82 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~-~~   82 (451)
                      -++.|+ .+|.+.|||+.+++.+.+++.+.   ..|+++.  -+|.-..+|.|..+ |+|.++++..++......+. ++
T Consensus       174 KIvvGs-~~G~lql~Nvrt~K~v~~f~~~~---s~IT~ie--qsPaLDVVaiG~~~-G~ViifNlK~dkil~sFk~d~g~  246 (910)
T KOG1539|consen  174 KIVVGS-SQGRLQLWNVRTGKVVYTFQEFF---SRITAIE--QSPALDVVAIGLEN-GTVIIFNLKFDKILMSFKQDWGR  246 (910)
T ss_pred             eEEEee-cCCcEEEEEeccCcEEEEecccc---cceeEec--cCCcceEEEEeccC-ceEEEEEcccCcEEEEEEccccc
Confidence            467788 89999999999999999998765   7788888  88888999999988 99999999999998888775 99


Q ss_pred             eeEEEECCCCcE-EEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh---
Q 012996           83 IKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE---  157 (451)
Q Consensus        83 v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---  157 (451)
                      |++++|..||+. +|+|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=..++...   
T Consensus       247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~  326 (910)
T KOG1539|consen  247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL  326 (910)
T ss_pred             eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence            999999999875 5667777999999999888776664 88899999999998888999999988888744311000   


Q ss_pred             ---------hh------------------------------------hh---------c---------------------
Q 012996          158 ---------CE------------------------------------SQ---------R---------------------  162 (451)
Q Consensus       158 ---------~~------------------------------------~~---------~---------------------  162 (451)
                               .+                                    ..         .                     
T Consensus       327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~  406 (910)
T KOG1539|consen  327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA  406 (910)
T ss_pred             eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence                     00                                    00         0                     


Q ss_pred             -----------------------------------------------------------------------ccccceecc
Q 012996          163 -----------------------------------------------------------------------ASHLYLHSF  171 (451)
Q Consensus       163 -----------------------------------------------------------------------~~~~~~~~~  171 (451)
                                                                                             .+......+
T Consensus       407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf  486 (910)
T KOG1539|consen  407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF  486 (910)
T ss_pred             hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence                                                                                   000011222


Q ss_pred             ---cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996          172 ---TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       172 ---~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (451)
                         ..|..+|++++...-+  +.+++++.+|.+.+||+.+...+..+.....+.++..+.....++++..|-.|+++|..
T Consensus       487 ~~~~ah~~~V~gla~D~~n--~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~  564 (910)
T KOG1539|consen  487 GDSPAHKGEVTGLAVDGTN--RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV  564 (910)
T ss_pred             ccCccccCceeEEEecCCC--ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence               3577788888775554  88999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (451)
                      +.         +.+..+.+|...|++++||| |++|++++.|++|++||+.++.++..+.. ..+.+.+.|||+|.+|||
T Consensus       565 t~---------kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT  634 (910)
T KOG1539|consen  565 TR---------KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLAT  634 (910)
T ss_pred             hh---------hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEE
Confidence            86         56778999999999999999 99999999999999999999999988865 789999999999999999


Q ss_pred             ccCC-CCccccccC
Q 012996          328 GSFS-NPHTSSRRH  340 (451)
Q Consensus       328 ~s~d-~~i~iw~~~  340 (451)
                      +..| .-|++|.-.
T Consensus       635 ~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  635 VHVDQNGIYLWSNK  648 (910)
T ss_pred             EEecCceEEEEEch
Confidence            9988 669999744

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=248.00  Aligned_cols=279  Identities=21%  Similarity=0.350  Sum_probs=243.8

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  113 (451)
                      ...+.+..  |.  ..+++++..+ ++|++|+..++.....  ..|.+.|.++++...+.+|++|+.|.++++||+.+|.
T Consensus       208 ~~~~~~~q--~~--~~~~~~~s~~-~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  208 DHVVLCLQ--LH--DGFFKSGSDD-STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             cchhhhhe--ee--cCeEEecCCC-ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence            34555555  55  5667777777 9999999988876654  5689999999998888999999999999999999999


Q ss_pred             ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      +..++.+|.+.|.++...  +..+++|+.|.+|++|++.           ....+..+.+|.++|.++...  +  .+++
T Consensus       283 C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-----------n~~~l~l~~~h~~~V~~v~~~--~--~~lv  345 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-----------NGACLNLLRGHTGPVNCVQLD--E--PLLV  345 (537)
T ss_pred             EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc-----------CcceEEEeccccccEEEEEec--C--CEEE
Confidence            999999999999999876  4578889999999999994           466788888899999999987  3  7999


Q ss_pred             EeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      +|+.|++|++||+.+++++..+. |...|.++.+.+. ..+++|+.|+.|++||+.+..        +++.++.+|..-+
T Consensus       346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLV  416 (537)
T ss_pred             EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCcccc
Confidence            99999999999999999999998 8999999988776 899999999999999999863        5678899999999


Q ss_pred             eEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996          273 TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       273 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~  348 (451)
                      ..+.+. +++|++++.||+|++||..++++++++.+ |.+.|+.+++.  ...+++++.||.+.+|++....+...+
T Consensus       417 ~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  417 SSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cccccc-cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            777665 79999999999999999999999999998 67888888887  568899999999999999877655443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-32  Score=216.27  Aligned_cols=270  Identities=20%  Similarity=0.332  Sum_probs=233.8

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .+|++++ .||.-.+-+-+||..+.+|.+|.   ..|....  ...+....|+++.| -+.+|||.-++.......|..-
T Consensus        30 ~flisa~-kd~~pmlr~g~tgdwigtfeghk---gavw~~~--l~~na~~aasaaad-ftakvw~a~tgdelhsf~hkhi  102 (334)
T KOG0278|consen   30 YFLISAS-KDGKPMLRNGDTGDWIGTFEGHK---GAVWSAT--LNKNATRAASAAAD-FTAKVWDAVTGDELHSFEHKHI  102 (334)
T ss_pred             eEEEEec-cCCCchhccCCCCCcEEeeeccC---cceeeee--cCchhhhhhhhccc-chhhhhhhhhhhhhhhhhhhhe
Confidence            5788999 99999999999999999998765   5566555  66666777777777 9999999999988888889999


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      |.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.|++++.|++|++||.+++       
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg-------  175 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG-------  175 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccC-------
Confidence            9999999999999999999999999998764 56778999999999999998899999999999999999763       


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCc
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                          ..++++. ...+|+++.+++++   .+++....+.|.+||..+...+..+..+..|.+..++|+...+++|+.|..
T Consensus       176 ----t~v~sL~-~~s~VtSlEvs~dG---~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~  247 (334)
T KOG0278|consen  176 ----TEVQSLE-FNSPVTSLEVSQDG---RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK  247 (334)
T ss_pred             ----cEEEEEe-cCCCCcceeeccCC---CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE
Confidence                3344443 45688999999997   456666678899999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCceeeee-eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          242 IYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      ++.||..++.         .+.. .++|.++|.|+.|+| |...++||.||+|++|....++..
T Consensus       248 ~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  248 VYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EEEEeccCCc---------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999984         2333 489999999999999 999999999999999998765543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.6e-31  Score=215.17  Aligned_cols=275  Identities=17%  Similarity=0.302  Sum_probs=223.1

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  113 (451)
                      .+...|..+.  |+|.++.|++++.| |++++|++..........|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus        11 pP~d~IS~v~--f~~~~~~LLvssWD-gslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   11 PPEDGISSVK--FSPSSSDLLVSSWD-GSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             CChhceeeEE--EcCcCCcEEEEecc-CcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence            4567888888  99999999999998 999999999988888888999999999987 5568899999999999998876


Q ss_pred             ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      .. .+..|..+|.||.+++....+++||.|++|++||.+.           ......+. ....|.++...  +  +.|+
T Consensus        87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-----------~~~~~~~d-~~kkVy~~~v~--g--~~Lv  149 (323)
T KOG1036|consen   87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-----------KVVVGTFD-QGKKVYCMDVS--G--NRLV  149 (323)
T ss_pred             ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-----------cccccccc-cCceEEEEecc--C--CEEE
Confidence            55 4557999999999999888899999999999999964           11222222 23377776653  3  6899


Q ss_pred             EeeCCCcEEEEEcCCCceeeee---ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCC-CCCCCCceeeeeecc--
Q 012996          194 SASEDRTCKVWSLLKGRLLRNI---VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP-STSSYGMHIIGSLSD--  267 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~--  267 (451)
                      +|+.+..+.+||+++.......   .....+.++++-|++.-+++++-||+|.+=.++.... ....+.+++......  
T Consensus       150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~  229 (323)
T KOG1036|consen  150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT  229 (323)
T ss_pred             EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence            9999999999999987655533   2677899999999999999999999998876665421 111222222211111  


Q ss_pred             -CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          268 -HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       268 -~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                       --.+|++|+|+| ...|+||+.||.|.+||+.+.+.+..+......|..++|+.+|..||+++
T Consensus       230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence             125899999999 99999999999999999999999999988888999999999999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=3e-31  Score=223.98  Aligned_cols=268  Identities=22%  Similarity=0.333  Sum_probs=233.8

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-eeeeecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-~~~~~~~~~   81 (451)
                      ..+.+|+ .|..+.++|..+++.+..+++|.   ..|+.+.  |+|+...+++++.| ..|+||...... ......|.+
T Consensus       232 ~~ilTGG-~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~--~~~~~~~v~~aSad-~~i~vws~~~~s~~~~~~~h~~  304 (506)
T KOG0289|consen  232 SKILTGG-EDKTAVLFDKPSNQILATLKGHT---KKITSVK--FHKDLDTVITASAD-EIIRVWSVPLSSEPTSSRPHEE  304 (506)
T ss_pred             CcceecC-CCCceEEEecchhhhhhhccCcc---eEEEEEE--eccchhheeecCCc-ceEEeeccccccCccccccccc
Confidence            3578899 99999999999999998887654   6666666  99999999999998 999999987544 334566899


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc--ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      +|+.+..+|.|.||++++.||...+.|++++..+.....  ..-.+++.+|+|||..|.+|..||.|+|||+..      
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks------  378 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS------  378 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC------
Confidence            999999999999999999999999999999998876643  234589999999999999999999999999954      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc--ceeEEEECCCCCEEEEEe
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~  237 (451)
                           ...+..|.+|+++|..+.|+.+|  .+|++++.|+.|++||+|..+...++..+.  .+.+++|++.|.+|+.++
T Consensus       379 -----~~~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  379 -----QTNVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             -----ccccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence                 44678899999999999999999  899999999999999999999888887544  599999999999999998


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      .+=.|++++-.+..       |..+..+..|.+..+++.|.. ..+++++|.|..++++.+
T Consensus       452 ~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  452 SDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeEEEEEeccccc-------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            88888888755543       677888889999999999998 999999999999988764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=7.4e-32  Score=232.43  Aligned_cols=285  Identities=14%  Similarity=0.186  Sum_probs=225.4

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee------ecCCCCeeEEEECCCCcEEEEeccCCCEEEEE
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  108 (451)
                      +...|.+++  +.|.|..+++|+.| .+|++||+.......+      ......|.++.|++.|..|++.+.....+|+|
T Consensus       166 gtk~Vsal~--~Dp~GaR~~sGs~D-y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  166 GTKIVSALA--VDPSGARFVSGSLD-YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             CceEEEEee--ecCCCceeeecccc-ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            456788888  99999999999999 9999999986543322      12356899999999999998888888999999


Q ss_pred             cCCCcceee-------------eccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996          109 VASGRLLKK-------------WHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus       109 ~~~~~~~~~-------------~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      - .|..+..             -++|...++|.+|+|+ ...|+|++.||++++||+.........     .....-.+.
T Consensus       243 R-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV-----ik~k~~~g~  316 (641)
T KOG0772|consen  243 R-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV-----IKTKPAGGK  316 (641)
T ss_pred             c-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-----EeeccCCCc
Confidence            4 4433322             2689999999999994 467999999999999999763321110     001112345


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce--eeeee--ccc--ceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL--LRNIV--FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~--~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (451)
                      ..+++.++|++++  .+|++|+.||.|.+|+..+...  ...+.  |..  .|+|+.|+++|++|++-+.|+.+++||++
T Consensus       317 Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  317 RVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            5678899999999  8999999999999999865422  22222  544  89999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeeeeeccC--CcceeEEEEec-CCEEEEEcC------CCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996          249 AESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLISGSE------DGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (451)
                      ..+        +++....+-  ..+-+.++||| ..+|++|..      .|++.+||..+.+.++++......|..+.|+
T Consensus       395 q~k--------kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh  466 (641)
T KOG0772|consen  395 QFK--------KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH  466 (641)
T ss_pred             ccc--------cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence            876        444444332  34667899999 889998853      5789999999999999999888999999999


Q ss_pred             ecCceeeeccCCCCccccc
Q 012996          320 RRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       320 ~~~~~l~~~s~d~~i~iw~  338 (451)
                      |.-+.|..|+.||.+.++=
T Consensus       467 pkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  467 PKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             chhhheeeecCCCceEEEE
Confidence            9999999999999987663

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=6.9e-32  Score=218.50  Aligned_cols=285  Identities=16%  Similarity=0.226  Sum_probs=230.4

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCC------Cc-------------eeeeecCCCCeeEEEECCCCcE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQ-------------VEVKSLPAEPIKPIAANSHGTY   94 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~------~~-------------~~~~~~~~~~v~~~~~~~~~~~   94 (451)
                      .|.....+.+  |++||.++|+|+.| ..|++.|++.      ..             +.....|.++|+++.|+|....
T Consensus       110 ~HK~~cR~aa--fs~DG~lvATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  110 SHKSPCRAAA--FSPDGSLVATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             ecccceeeee--eCCCCcEEEccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            4556666667  99999999999999 9999999861      11             1122337899999999999999


Q ss_pred             EEEeccCCCEEEEEcCCCcceeeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996           95 IAGGGQSGDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT  172 (451)
Q Consensus        95 l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  172 (451)
                      |++|+.|++|++||+......+.++  ....+|.++.|+|.|.+|+.|.....+++||+.+...        ......-.
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc--------fvsanPd~  258 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC--------FVSANPDD  258 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE--------eeecCccc
Confidence            9999999999999987654443332  2456899999999999999999999999999976311        11112345


Q ss_pred             CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--c-ccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--F-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       173 ~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      .|++.|+++.+++.+  ++.++++.||.|++||--+++++.++.  | ...|.+..|..+++++++.+.|..+++|.+.+
T Consensus       259 qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             ccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence            799999999999998  899999999999999999999999887  3 56799999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeeeeccC-----CcceeEEEEec-CCEEEEEcC-CCcEEEEeCCCCceEEEee-cCCCCeeEEEEEec
Q 012996          250 ESPSTSSYGMHIIGSLSDH-----SKAVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRR  321 (451)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~  321 (451)
                      +.         .+..+.|-     ..--+...|+. .+|++.-.. .+.++-||.++...+..+. +|.+++..+.-||.
T Consensus       337 ~R---------~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~  407 (430)
T KOG0640|consen  337 GR---------MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV  407 (430)
T ss_pred             Cc---------eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence            74         34444332     11223445666 777776654 5779999999988776654 79999999999999


Q ss_pred             CceeeeccCCCCccccccC
Q 012996          322 PLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       322 ~~~l~~~s~d~~i~iw~~~  340 (451)
                      +.-+.++|.|-..++|-.+
T Consensus       408 ~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  408 EPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceeeecccceeeeeeec
Confidence            9999999999999999755

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=9.2e-31  Score=242.06  Aligned_cols=270  Identities=23%  Similarity=0.400  Sum_probs=230.8

Q ss_pred             EEEeecCCCCCCeEEEECccCceeee-eecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLR-YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPA   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~   80 (451)
                      ..+++++ .|++|++||..++..+.. +.+   |..+|.+++  |...+..+++|+.| .+++|||..++++.... .|.
T Consensus       219 ~~~~~~s-~~~tl~~~~~~~~~~i~~~l~G---H~g~V~~l~--~~~~~~~lvsgS~D-~t~rvWd~~sg~C~~~l~gh~  291 (537)
T KOG0274|consen  219 GFFKSGS-DDSTLHLWDLNNGYLILTRLVG---HFGGVWGLA--FPSGGDKLVSGSTD-KTERVWDCSTGECTHSLQGHT  291 (537)
T ss_pred             CeEEecC-CCceeEEeecccceEEEeeccC---CCCCceeEE--EecCCCEEEEEecC-CcEEeEecCCCcEEEEecCCC
Confidence            4678888 999999999999998876 665   556677776  77667888888888 99999999999987654 488


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      +.|.++...  +.++++|+.|.+|++|++.++..+..+.+|.++|.++..+  +.++++|+.||+|++||+.        
T Consensus       292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~--------  359 (537)
T KOG0274|consen  292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR--------  359 (537)
T ss_pred             ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh--------
Confidence            999998885  5678889999999999999999999999999999999998  7899999999999999994        


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeeec-ccceeEEEECCCCCEEEEEeC
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIVF-PSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~  238 (451)
                         ...+++.+.+|...|+++.+...   ..+++|+.|++|++||+++. +++..+.+ ...+..  +...+++|++++.
T Consensus       360 ---~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~--l~~~~~~Lvs~~a  431 (537)
T KOG0274|consen  360 ---TGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS--LLLRDNFLVSSSA  431 (537)
T ss_pred             ---hceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccc--cccccceeEeccc
Confidence               47789999999999999987664   58999999999999999999 88888874 444433  3447889999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      |+.|++||....         ..+..+.+ |...|+.+++. ...+++++.||++++||++++.+.+.+-.+
T Consensus       432 D~~Ik~WD~~~~---------~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  432 DGTIKLWDAEEG---------ECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             cccEEEeecccC---------ceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence            999999999987         45667777 67888888775 578999999999999999999998877433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.5e-31  Score=208.69  Aligned_cols=245  Identities=17%  Similarity=0.286  Sum_probs=216.3

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee--eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcc
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ..|...|.+++|+.+|..|++|+.|+++.+|++...+....  ..+|.+.|-.++|+| +...|++++.|.+|++||++.
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            34678999999999999999999999999999988765543  478999999999998 677899999999999999965


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (451)
                                 .++........+.+ -+.|+|++  .+++.++.|..|.+.|.++.+.....+....+.-++|+.++.+|
T Consensus        97 -----------~k~~~~i~~~~eni-~i~wsp~g--~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F  162 (313)
T KOG1407|consen   97 -----------GKCTARIETKGENI-NITWSPDG--EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF  162 (313)
T ss_pred             -----------CcEEEEeeccCcce-EEEEcCCC--CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence                       34455444444444 46788888  89999999999999999999999998888899999999989999


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP  312 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (451)
                      +.....|.|.|......         +++..+..|.....||.|+| |++||+|+.|..+.+||+...-+++.+..+.-|
T Consensus       163 flt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             EEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence            98888899999988764         67889999999999999999 999999999999999999999999999999999


Q ss_pred             eeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       313 v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      |..|.||.||++||+||.|..|-|-+++++..
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEeEecccCCe
Confidence            99999999999999999999998877776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=2.4e-30  Score=218.53  Aligned_cols=281  Identities=16%  Similarity=0.180  Sum_probs=237.8

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  114 (451)
                      ..++..+.  ..|....+++||.| ..+.++|...++.. ...+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus       219 ~pgi~ald--~~~s~~~ilTGG~d-~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  219 TPGITALD--IIPSSSKILTGGED-KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCCeeEEe--ecCCCCcceecCCC-CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            34566666  77777888899988 99999999888765 4466889999999999999999999999999999988888


Q ss_pred             eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      ......|.++|+.+..+|.|.||++++.||+..+.|++++         .......-....-.+++.+|+|+|  .++.+
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g---------~~lt~vs~~~s~v~~ts~~fHpDg--Lifgt  364 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG---------SQLTVVSDETSDVEYTSAAFHPDG--LIFGT  364 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC---------cEEEEEeeccccceeEEeeEcCCc--eEEec
Confidence            8888999999999999999999999999999999999763         222222222234568999999999  89999


Q ss_pred             eeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCCcce
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAV  272 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v  272 (451)
                      |..||.|+|||+.++..+..|. |.++|..++|+.+|-+|++++.|+.|++||++....         ..++. .....+
T Consensus       365 gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---------~kt~~l~~~~~v  435 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---------FKTIQLDEKKEV  435 (506)
T ss_pred             cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---------cceeeccccccc
Confidence            9999999999999999888888 899999999999999999999999999999998641         22222 223479


Q ss_pred             eEEEEec-CCEEEEEcCCCcEEEEeC--CCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          273 TCLAYST-GDLLISGSEDGMVRVWDP--ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       273 ~~~~~~~-~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      .++.|.+ |.+|+.++.|=.|++++-  .+..++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus       436 ~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  436 NSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            9999999 999999988866766663  367788889999999999999999999999999999887653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3e-29  Score=204.27  Aligned_cols=276  Identities=15%  Similarity=0.168  Sum_probs=222.5

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCC
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASG  112 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~  112 (451)
                      ...|.++.  |+++|.++++++.| ..+++||..++....... +.-.|..++|....+.++.++.  |.+|+..++.+.
T Consensus        14 ~~~i~sl~--fs~~G~~litss~d-Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   14 NGKINSLD--FSDDGLLLITSSED-DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             CCceeEEE--ecCCCCEEEEecCC-CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            35677788  99999999997777 899999998887765544 3457888889776677776666  789999999999


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      +.++.|.+|...|++++.+|-+..+++++.|++|++||++.           ..+...+...  .-..++|.|.|  -++
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-----------~~cqg~l~~~--~~pi~AfDp~G--Lif  155 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-----------KKCQGLLNLS--GRPIAAFDPEG--LIF  155 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-----------CCCceEEecC--CCcceeECCCC--cEE
Confidence            99999999999999999999889999999999999999964           1122222212  22346788887  788


Q ss_pred             EEeeCCCcEEEEEcCCC--ceeeeee----cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          193 VSASEDRTCKVWSLLKG--RLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                      |++.....|++||++.-  .+...+.    .....+.+.|+|+|++++.++..+.+++.|.-.+.         ...++.
T Consensus       156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs  226 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---------VKSTFS  226 (311)
T ss_pred             EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---------EeeeEe
Confidence            88888879999999863  3444444    24678899999999999999999999999998874         344555


Q ss_pred             cCCcce---eEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          267 DHSKAV---TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       267 ~~~~~v---~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      .+...-   -..+|+| ++++++|+.||+|.+|+++++..+..+++ +.++++++.|+|.-..++++  +..+.+|-..
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence            554322   5678899 99999999999999999999999999998 68899999999988777776  4667777654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.98  E-value=2.6e-31  Score=228.45  Aligned_cols=277  Identities=19%  Similarity=0.280  Sum_probs=238.9

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----eee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEE
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  108 (451)
                      |..-|.++.  ++...+++.++|.  |.|+|||+....-.     ... .....|.++...|||+.|++|+.-.++.|||
T Consensus       418 HGEvVcAvt--IS~~trhVyTgGk--gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  418 HGEVVCAVT--ISNPTRHVYTGGK--GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             cCcEEEEEE--ecCCcceeEecCC--CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            445566666  8889999999998  89999999754321     111 1356799999999999999999999999999


Q ss_pred             cCCCcc--eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          109 VASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       109 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      +.....  ...+....-.+.+++.+||.+..+++..||.|.|||+.           ....++.|.+|+..+.||.++++
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-----------nq~~VrqfqGhtDGascIdis~d  562 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-----------NQTLVRQFQGHTDGASCIDISKD  562 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-----------cceeeecccCCCCCceeEEecCC
Confidence            976644  33444444567789999999999999999999999994           46788999999999999999999


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                      |  ..|.+|+.|.+|+.||++.++.+....+.+.|.++.++|.+.++++|-.++.+.+.......          ...+.
T Consensus       563 G--tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----------kyqlh  630 (705)
T KOG0639|consen  563 G--TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----------KYQLH  630 (705)
T ss_pred             C--ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----------ceeec
Confidence            9  89999999999999999999999998899999999999999999999999999988776643          44667


Q ss_pred             cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      -|...|.++.|.+ |+++++.+.|+.+..|...-|..+...+. .++|.++.+|.|.+|++|||.|....+|.+
T Consensus       631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            7999999999999 99999999999999999999988888765 678999999999999999999988777653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=7.5e-31  Score=223.24  Aligned_cols=254  Identities=16%  Similarity=0.203  Sum_probs=209.6

Q ss_pred             eeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCc----------ceeeeccccCCeeEEEEcc-CCcEEEEeeC
Q 012996           75 VKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGR----------LLKKWHAHYRAVTCLVFSE-DGSFLISGSE  142 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~  142 (451)
                      .+..|.+.|+.+.+.|.. ..+|+++..+.|+|||.....          +-..+.+|.+.-.+++|++ ..-.|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            445689999999999965 556777888999999986432          1236789998888999998 4457999999


Q ss_pred             CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--Cceeeeee-ccc
Q 012996          143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIV-FPS  219 (451)
Q Consensus       143 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~-~~~  219 (451)
                      |+.|++||+......    .....+...+.+|...|..++|++-.. .++++++.|+.+.|||+|+  .++..... |..
T Consensus       199 d~~i~lwdi~~~~~~----~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  199 DHTICLWDINAESKE----DKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             CCcEEEEeccccccC----CccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            999999999764322    122345667899999999999998765 7899999999999999995  34434443 889


Q ss_pred             ceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEe
Q 012996          220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd  296 (451)
                      .+.|++|+| ++..||+|+.|++|.+||+++..        .++.++.+|...|.++.|+|  ...|++++.|+.+.|||
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence            999999999 67788999999999999999976        67889999999999999999  88999999999999999


Q ss_pred             CCC--------------CceEEEeecCCCCeeEEEEEecCc-eeeeccCCCCccccccCC
Q 012996          297 PIT--------------HNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       297 ~~~--------------~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s~d~~i~iw~~~~  341 (451)
                      +..              .+++..-.+|.+.|..+.|+|... .+++++.|+.+.||+...
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            864              134566778999999999999664 568899999999999764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-30  Score=211.91  Aligned_cols=273  Identities=22%  Similarity=0.296  Sum_probs=233.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEEC------CCCc----
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW------SKPQ----   72 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~------~~~~----   72 (451)
                      .++.+++ .|.+.+||.+++|+++.+|.+|.   +.|.++.  |++.+.++++++.| ++.+||..      ..+.    
T Consensus       161 pi~gtAS-ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsik--fh~s~~L~lTaSGD-~taHIW~~av~~~vP~~~a~~~  233 (481)
T KOG0300|consen  161 PICGTAS-ADHTARIWSLESGACLATYTGHT---GSVNSIK--FHNSGLLLLTASGD-ETAHIWKAAVNWEVPSNNAPSD  233 (481)
T ss_pred             cceeecc-cccceeEEeeccccceeeecccc---cceeeEE--eccccceEEEccCC-cchHHHHHhhcCcCCCCCCCCC
Confidence            3578899 99999999999999999998765   5566666  99999999999999 99999962      1100    


Q ss_pred             -------------------------------eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc
Q 012996           73 -------------------------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH  121 (451)
Q Consensus        73 -------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  121 (451)
                                                     +.....|...|.+..|-..|..+++++.|.+..+||+++|+.+..+.+|
T Consensus       234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH  313 (481)
T KOG0300|consen  234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH  313 (481)
T ss_pred             CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence                                           0112236778889999999999999999999999999999999999999


Q ss_pred             cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ....+.++-+|..+++++++.|.+.++||++.          ....+..|.+|...|++..|..+   ..+++|+.|.+|
T Consensus       314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFRe----------aI~sV~VFQGHtdtVTS~vF~~d---d~vVSgSDDrTv  380 (481)
T KOG0300|consen  314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE----------AIQSVAVFQGHTDTVTSVVFNTD---DRVVSGSDDRTV  380 (481)
T ss_pred             chhccccccCCcceEEEEeccCceeEeccchh----------hcceeeeecccccceeEEEEecC---CceeecCCCceE
Confidence            99999999999999999999999999999953          45567889999999999999887   589999999999


Q ss_pred             EEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996          202 KVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (451)
Q Consensus       202 ~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  279 (451)
                      ++||+++. .++.++...++++.++++..+..++.-..+..|++||++......     .+-..-++|...|+|++|.. 
T Consensus       381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeecccc
Confidence            99999975 567888899999999999999999999999999999998764321     12234568999999999986 


Q ss_pred             --CCEEEEEcCCCcEEEEeCCCC
Q 012996          280 --GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       280 --~~~l~s~~~dg~i~iwd~~~~  300 (451)
                        -.-|++++.|..+.=|.+...
T Consensus       456 hp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  456 HPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CcccccccccccceeeeeEeccc
Confidence              456889999999999998754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.3e-31  Score=205.92  Aligned_cols=250  Identities=18%  Similarity=0.206  Sum_probs=208.5

Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC---cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEee
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd  150 (451)
                      ...|.+.|..+...-.|+.||+++.|+.|+|+.++.+   .++.++.+|.++|..++|..  .|.+|++++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3457788888888778999999999999999999765   45788999999999999975  899999999999999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c-eeeee--ecccceeEEEE
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R-LLRNI--VFPSVIDAIAL  226 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~--~~~~~i~~~~~  226 (451)
                      -.+         ...........|...|++++|.|.+.+-.|++++.||.|.+.+++.. . ....+  .|+-.+++++|
T Consensus        87 e~~---------g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   87 EEN---------GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             cCC---------CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence            865         34555677788999999999999998899999999999999998764 1 22222  28889999999


Q ss_pred             CCC---C-----------CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-----CCEEEEEc
Q 012996          227 DPA---E-----------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----GDLLISGS  287 (451)
Q Consensus       227 ~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~l~s~~  287 (451)
                      .|.   |           +.|++|+.|..|++|+.....       +..-.++.+|...|+.++|.|     ..+|++++
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S  230 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS  230 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence            995   4           569999999999999998863       344556999999999999999     35899999


Q ss_pred             CCCcEEEEeCCCC-c--eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          288 EDGMVRVWDPITH-N--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       288 ~dg~i~iwd~~~~-~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .||+|.||-.... +  ....+......+..+.||+.|+.|+.++.|+.+.+|.-..
T Consensus       231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            9999999976521 1  1122333467899999999999999999999999998553

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4e-29  Score=203.55  Aligned_cols=254  Identities=16%  Similarity=0.231  Sum_probs=214.2

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFE  156 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~  156 (451)
                      ....|.++.|+++|.++++++.|..+++||..+++.+.++..+.-.|..++|......++.++.  |.+|+..++     
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl-----   87 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL-----   87 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe-----
Confidence            3578999999999999999999999999999999999999888888999999887777777766  889999999     


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (451)
                            .....++.|.||...|.+++.+|.+  ..+++++.|++|++||++..++...+... .-..++|+|.|-++|++
T Consensus        88 ------~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~  158 (311)
T KOG1446|consen   88 ------HDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALA  158 (311)
T ss_pred             ------ecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEe
Confidence                  4577899999999999999999998  89999999999999999988777666533 33457899999999999


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe--
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV--  313 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--  313 (451)
                      ...+.|++||++.-....    +.......+-....+.|.||| |++|+.+...+.+.+.|.-+|..+.++..+...-  
T Consensus       159 ~~~~~IkLyD~Rs~dkgP----F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGP----FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL  234 (311)
T ss_pred             cCCCeEEEEEecccCCCC----ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence            988899999998753210    111111124467889999999 9999999999999999999999999998775532  


Q ss_pred             -eEEEEEecCceeeeccCCCCccccccCCCCCCCcccc
Q 012996          314 -NNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDK  350 (451)
Q Consensus       314 -~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~  350 (451)
                       -..+|+||++++.+|+.||++.+|+.+.+.....++.
T Consensus       235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence             5678999999999999999999999987665444433

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.4e-29  Score=233.49  Aligned_cols=232  Identities=16%  Similarity=0.181  Sum_probs=185.3

Q ss_pred             eccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC
Q 012996           98 GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (451)
Q Consensus        98 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (451)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|++||+.+......   ....++..+.+|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---EIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---ccccceEEeecCCC
Confidence            567889999998877788889999999999999996 78999999999999999965211000   00123446788999


Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (451)
                      .|.+++|+|++. .++++++.|++|++||+++++....+.+...|.+++|+|+|.+|++++.|+.|++||++++      
T Consensus       127 ~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg------  199 (568)
T PTZ00420        127 KISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ------  199 (568)
T ss_pred             cEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC------
Confidence            999999999873 4568999999999999999988887778888999999999999999999999999999986      


Q ss_pred             CCceeeeeeccCCcceeEE-----EEec-CCEEEEEcCCC----cEEEEeCCC-CceEEEeecC--CCCeeEEEEEecCc
Q 012996          257 YGMHIIGSLSDHSKAVTCL-----AYST-GDLLISGSEDG----MVRVWDPIT-HNIVRMFRLA--KGPVNNILVVRRPL  323 (451)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~-----~~~~-~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~~--~~~v~~l~~s~~~~  323 (451)
                         ..+..+.+|.+.+.+.     .|++ +.+|++++.|+    .|+|||+++ ..++..+..+  .+.+......++|.
T Consensus       200 ---~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        200 ---EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             ---cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence               4456788888765433     3446 78888887764    799999985 5666665433  33344444455688


Q ss_pred             eeeeccCCCCccccccCCC
Q 012996          324 YLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       324 ~l~~~s~d~~i~iw~~~~~  342 (451)
                      ++++|+.|+.|++|++...
T Consensus       277 l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEEEECCCeEEEEEccCC
Confidence            9999999999999998654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-30  Score=230.24  Aligned_cols=283  Identities=14%  Similarity=0.217  Sum_probs=238.5

Q ss_pred             eccCcccCCCCCCccEEEEECCCCce-------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC--cceeee
Q 012996           48 ASSQLREQPSASSGSILYWSWSKPQV-------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW  118 (451)
Q Consensus        48 ~~~~~l~~~~~d~g~i~vw~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~  118 (451)
                      |.+++|.+||.| |.|++|+.....-       .....|.+.|..+....+++.|++++.|-+|++|+...+  -+..++
T Consensus        35 ~~~ryLfTgGRD-g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRD-GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCCceEEecCCC-ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence            567789999999 9999999864332       122347889999999999999999999999999999877  577888


Q ss_pred             ccccCCeeEEEE-ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEee
Q 012996          119 HAHYRAVTCLVF-SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS  196 (451)
Q Consensus       119 ~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~  196 (451)
                      ..|.+.|.|+++ .++...+++||.|+.|.+||+.++....... ........+. ++..+|++++..+.+  ..+++|+
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-~n~~t~~sl~sG~k~siYSLA~N~t~--t~ivsGg  190 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-FNNVTVNSLGSGPKDSIYSLAMNQTG--TIIVSGG  190 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-ccccccccCCCCCccceeeeecCCcc--eEEEecC
Confidence            999999999999 7788899999999999999998764311111 1122233333 899999999999888  8999999


Q ss_pred             CCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996          197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (451)
Q Consensus       197 ~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  275 (451)
                      ..+.+++||.++++.+..+. |...|.++..+++|..+++++.||+|++||+..+         +++.++..|...|+++
T Consensus       191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWAL  261 (735)
T ss_pred             cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------ceeeeEEeccCceEEE
Confidence            99999999999998887777 8899999999999999999999999999999987         6788899999999999


Q ss_pred             EEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          276 AYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       276 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      ..+| -..+.+|+.||.|..=|+++......+.....||..+..+.+.+-+-+++.|+.|+-|......
T Consensus       262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~  330 (735)
T KOG0308|consen  262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI  330 (735)
T ss_pred             eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence            9999 8999999999999999999865544555557789998888766666888899999999876543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.6e-29  Score=202.63  Aligned_cols=267  Identities=18%  Similarity=0.266  Sum_probs=212.1

Q ss_pred             EEEeecCCCCCCeEEEECccCc------e---eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce
Q 012996            3 LLIASSSVADTGIGCWDLESGA------E---QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV   73 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~   73 (451)
                      .-|++|+ ....|.-+++.-..      +   +..+-.+..|...+++++    .++.++|+|+.| .+|+|||+.+...
T Consensus         2 m~iIvGt-YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavA----Vs~~~~aSGssD-etI~IYDm~k~~q   75 (362)
T KOG0294|consen    2 MEIIVGT-YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALA----VSGPYVASGSSD-ETIHIYDMRKRKQ   75 (362)
T ss_pred             eeEEEee-eeeEEEEEEeccCccccccccceeeeccccccccccceeEEE----ecceeEeccCCC-CcEEEEeccchhh
Confidence            3567777 67777777654221      1   111234556778888877    678999999999 9999999986554


Q ss_pred             e-eeecCCCCeeEEEECCCCc--EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           74 E-VKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        74 ~-~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      . ....|.+.|+++.|.++-.  .|++|+.||.|.+|+..+..++.++++|.+.|+.++.+|.+++-++.+.|+.++.||
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN  155 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence            3 4556899999999998765  899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      +-++         ....+..+. +  .-+.+.|++.|  .+++.+..+ .|-+|.+.+......+..+..+.++.|. ++
T Consensus       156 LV~G---------r~a~v~~L~-~--~at~v~w~~~G--d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~  219 (362)
T KOG0294|consen  156 LVRG---------RVAFVLNLK-N--KATLVSWSPQG--DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DG  219 (362)
T ss_pred             hhcC---------ccceeeccC-C--cceeeEEcCCC--CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CC
Confidence            9552         222333332 1  12337898887  677777665 4999999988888777777667777664 67


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe--c-CCEEEEEcCCCcEEEEeCCCC
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS--T-GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~l~s~~~dg~i~iwd~~~~  300 (451)
                      ..|++|+.|+.|.+||.+..         .+...+.+|...|-++.+-  | +.+|+++|+||.|+|||++..
T Consensus       220 ~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  220 SELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            78999999999999999875         5577889999999999843  3 789999999999999998765

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.3e-29  Score=232.73  Aligned_cols=250  Identities=16%  Similarity=0.209  Sum_probs=190.7

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCC----------Ccce---eeeccccCCeeEEEEcc-CCcEEEEeeCCCcE
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVAS----------GRLL---KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV  146 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~---~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i  146 (451)
                      ..|.....++++..+++++.+.....|+...          |+..   ..+.+|.+.|.+++|+| ++++|++|+.||+|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            3455555566655555555555555555432          2221   24678999999999999 88999999999999


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEE
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA  225 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~  225 (451)
                      ++||+.+....    .....++..+.+|...|.+++|+|.+. ++|++++.|++|++||+.+++.+..+. |...|.+++
T Consensus       101 kIWdi~~~~~~----~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421        101 MGWGIPEEGLT----QNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             EEEecCCCccc----cccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            99999652110    011234667889999999999999753 689999999999999999998888876 788999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc-eeEEEEec-CCEEEEEc----CCCcEEEEeCCC
Q 012996          226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA-VTCLAYST-GDLLISGS----EDGMVRVWDPIT  299 (451)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~l~s~~----~dg~i~iwd~~~  299 (451)
                      |+|++.+|++++.|+.|++||++++         ..+..+.+|.+. +..+.|.+ +..+++++    .|+.|++||+++
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            9999999999999999999999886         446677788765 44677888 66776654    479999999987


Q ss_pred             Cc-eEEEeecCC-CCeeEEEEEecCceeeecc-CCCCccccccCCCCC
Q 012996          300 HN-IVRMFRLAK-GPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGSQL  344 (451)
Q Consensus       300 ~~-~~~~~~~~~-~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~~~~  344 (451)
                      .. ++.....+. ..+....|++++.+|++++ .|+.|++|++....+
T Consensus       247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            54 444444333 4566678899999999887 599999999986654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.7e-29  Score=225.34  Aligned_cols=280  Identities=22%  Similarity=0.310  Sum_probs=231.5

Q ss_pred             ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee---eecCCCCeeE-EEECC-CCcEEEEe
Q 012996           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKP-IAANS-HGTYIAGG   98 (451)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~-~~~~~-~~~~l~~~   98 (451)
                      +..+.+.+|...+..+.     . .++-.+++++.| |++++|+-..++...   ...|.+-|.+ +++-+ ++-.+++|
T Consensus         5 ~ls~~l~gH~~DVr~v~-----~-~~~~~i~s~sRd-~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g   77 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVA-----V-TDGVCIISGSRD-GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG   77 (745)
T ss_pred             eeEEEeccCccchheeE-----e-cCCeEEeecCCC-CceeeeeccCcccccceecccCcceeeccceeccccCcceEee
Confidence            44556666665544433     2 234567788887 999999976655443   2235555555 77765 45569999


Q ss_pred             ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996           99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus        99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      +.|+.|.+|......++.++++|...|.|+....++. +++||.|.++++|....             +...+.+|+..|
T Consensus        78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-------------l~~~l~gH~asV  143 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-------------LVYSLQGHTASV  143 (745)
T ss_pred             cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-------------hhcccCCcchhe
Confidence            9999999999999999999999999999999887777 99999999999998843             455689999999


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      ++++.-|.   ..++||+.|.+|++|.-  ++.++++. |...|+.+++-|++. |++++.||.|++|++..        
T Consensus       144 WAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g--------  209 (745)
T KOG0301|consen  144 WAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG--------  209 (745)
T ss_pred             eeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccC--------
Confidence            99998887   48999999999999984  77788887 899999999987754 67889999999999955        


Q ss_pred             CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                        ..+.++.+|+..|+++.... +..++++++|++++||+..  ++.+.+..+...|+++.+-++| -+++|+.||.|+|
T Consensus       210 --e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrV  284 (745)
T KOG0301|consen  210 --EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRV  284 (745)
T ss_pred             --ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEE
Confidence              55888999999999999766 9999999999999999976  8899999888899999999988 4788889999999


Q ss_pred             cccCCCC
Q 012996          337 SRRHGSQ  343 (451)
Q Consensus       337 w~~~~~~  343 (451)
                      |.....+
T Consensus       285 fT~~k~R  291 (745)
T KOG0301|consen  285 FTVDKDR  291 (745)
T ss_pred             EEecccc
Confidence            9987443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2e-29  Score=203.48  Aligned_cols=248  Identities=20%  Similarity=0.245  Sum_probs=203.9

Q ss_pred             eeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC-Ccce-eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           74 EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-GRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        74 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      .+...+.+.|.+|+||| ...++++|+.||+|++|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            34455678999999999 666777999999999999987 3333 34567999999999999999999999999999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      +.+           . .+..+..|.++|..+.|-+......|+||+.|++|+.||.+...++.++..+..++++..  ..
T Consensus       101 L~S-----------~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~  166 (347)
T KOG0647|consen  101 LAS-----------G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LY  166 (347)
T ss_pred             ccC-----------C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cC
Confidence            955           2 355677899999999998877556899999999999999999999999999999888765  45


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC--ceEEEee
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRMFR  307 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~--~~~~~~~  307 (451)
                      .+++++..+..|.+|+++++....       -.........++|++..+ .+..+.|+-+|.+.|..++.+  +.-.+|+
T Consensus       167 pm~vVata~r~i~vynL~n~~te~-------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEF-------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchh-------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence            688999999999999998764211       111112345688998888 677799999999999998876  4445677


Q ss_pred             cCCC---------CeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          308 LAKG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       308 ~~~~---------~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      .|..         +|++|+|+|.-..|+|++.||+..+||-...
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence            7752         5889999999999999999999999997643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1e-30  Score=219.44  Aligned_cols=247  Identities=22%  Similarity=0.299  Sum_probs=216.9

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcch
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  154 (451)
                      ..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++.+..++|+++.|.++++++++++.|+.+++|++   
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv---  248 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV---  248 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec---
Confidence            3478899999999998999999999999999987766  67788888999999999999999999999999999999   


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (451)
                              ......+++.+|+..|+++.|....  ..+++|+.|.+|++||+....+..++...+.+..++.+  ...++
T Consensus       249 --------d~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~  316 (459)
T KOG0288|consen  249 --------DSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVI  316 (459)
T ss_pred             --------cchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccccccccceEec--ceeee
Confidence                    4566788999999999999998876  45999999999999999999998888877888888876  66789


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC----
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA----  309 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----  309 (451)
                      +|..|+.|++||.+...         +......+ +.|+++..++ +..|.+++.|.++.+.|+++.+....+...    
T Consensus       317 SgH~DkkvRfwD~Rs~~---------~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~  386 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSAD---------KTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC  386 (459)
T ss_pred             ecccccceEEEeccCCc---------eeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence            99999999999999874         34455554 4999999999 999999999999999999999888877642    


Q ss_pred             CCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~  348 (451)
                      ....+.+.|||++.|+++||.||.++||++.++++...+
T Consensus       387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence            235899999999999999999999999999988765443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=5.3e-28  Score=208.23  Aligned_cols=312  Identities=15%  Similarity=0.282  Sum_probs=244.7

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-----cC
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LP   79 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-----~~   79 (451)
                      ++.-.+.+..+.|||...+......+.   ....+....  |+|.+..+++.... |.+.+|+..++....+.     ..
T Consensus       172 ~~vD~s~~h~lSVWdWqk~~~~~~vk~---sne~v~~a~--FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~e  245 (626)
T KOG2106|consen  172 CAVDDSNPHMLSVWDWQKKAKLGPVKT---SNEVVFLAT--FHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKRE  245 (626)
T ss_pred             EEecCCCccccchhhchhhhccCccee---ccceEEEEE--eccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccccc
Confidence            333333678899999998877755553   235566666  99988887777777 99999999877655332     23


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||- .......
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-~y~k~r~  322 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-NYRKLRE  322 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccc-ccccccc
Confidence            47899999999987 77899999999999987777777779999999999999987 555999999999992 2111100


Q ss_pred             hh--c----------------------------ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC
Q 012996          160 SQ--R----------------------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG  209 (451)
Q Consensus       160 ~~--~----------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~  209 (451)
                      ..  .                            -.........+|......++.+|+.  +.+++++.|+.+++|+  ..
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~  398 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DH  398 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcceEEEcc--CC
Confidence            00  0                            0011122345788888899999988  8999999999999999  67


Q ss_pred             ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC
Q 012996          210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE  288 (451)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~  288 (451)
                      ++..+.....++.|+.|+|.| .+++|+..|...+.|..+..         .+. +.....+++++.|+| |.+||.|+.
T Consensus       399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---------lv~-~~~d~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---------LVT-IHTDNEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce---------eEE-EEecCCceEEEEEcCCCCEEEEecC
Confidence            777777788999999999999 99999999999999998852         233 333388999999999 999999999


Q ss_pred             CCcEEEEeCCC-CceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          289 DGMVRVWDPIT-HNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       289 dg~i~iwd~~~-~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |+.|+||-+.. +....... .+..+|+.|.||+|+++|.+-|.|-.+..|...
T Consensus       468 d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  468 DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            99999998864 34333333 344799999999999999999999999999543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-28  Score=199.33  Aligned_cols=259  Identities=17%  Similarity=0.221  Sum_probs=206.6

Q ss_pred             eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEE
Q 012996           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI  148 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~v  148 (451)
                      +...|.+-|.++.|.+.|+.+|+|+.|++|+|||..+.    .+-...+.|.+.|..+.|.+  -|+.+++++.|+++.|
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            44557788999999999999999999999999997544    45566789999999999965  6899999999999999


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee------eeee------
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL------RNIV------  216 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~------  216 (451)
                      |.=....  ............++....+.|+++.|.|...|-.+++++.||.++||+....-.+      ..+.      
T Consensus        88 WEE~~~~--~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   88 WEEQEKS--EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeecccc--cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9753111  1111123445667778889999999999887789999999999999987654322      2222      


Q ss_pred             --cccceeEEEECC---CCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--C---C
Q 012996          217 --FPSVIDAIALDP---AEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G---D  281 (451)
Q Consensus       217 --~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~---~  281 (451)
                        +..+..|+.|+|   ...+|++|+.+     +.++||.......     .+..+.++.+|..+|+.++|.|  |   .
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~kva~L~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLKVAELPDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----eeeeehhcCCCCCcceeeeeccccCCcee
Confidence              345678999998   45788888876     4788887765432     1356778889999999999999  4   3


Q ss_pred             EEEEEcCCCcEEEEeCCCC--------------------ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          282 LLISGSEDGMVRVWDPITH--------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       282 ~l~s~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +||+++.|| |+||.+...                    +.+..+..|.++|+.+.|+-.|..|++.|.||.+++|+..-
T Consensus       241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            899999999 999998731                    23556779999999999999999999999999999999653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.7e-29  Score=229.64  Aligned_cols=240  Identities=19%  Similarity=0.315  Sum_probs=194.4

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC----------------------------ce------------
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----------------------------QV------------   73 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~----------------------------~~------------   73 (451)
                      .|.++|.++.  |++||+|||+||.| |.|+||.+...                            ..            
T Consensus       265 ah~gaIw~mK--FS~DGKyLAsaGeD-~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMK--FSHDGKYLASAGED-GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEE--eCCCCceeeecCCC-ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            6778999999  99999999999999 99999986540                            00            


Q ss_pred             ---------------------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc
Q 012996           74 ---------------------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE  132 (451)
Q Consensus        74 ---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  132 (451)
                                           .....|.+.|..|.||.+ ++|++++.|.+|++|++...++++.|. |...|+|++|+|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence                                 001136778999999975 578899999999999999999999996 999999999999


Q ss_pred             -CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce
Q 012996          133 -DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL  211 (451)
Q Consensus       133 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  211 (451)
                       |.+||++|+-||.|+||++..           .. +.....-..-|+++++.|+|  +..+.|+.+|.+++|+....+.
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d-----------~~-Vv~W~Dl~~lITAvcy~PdG--k~avIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISD-----------KK-VVDWNDLRDLITAVCYSPDG--KGAVIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             cCCCcEeecccccceEEeecCc-----------Ce-eEeehhhhhhheeEEeccCC--ceEEEEEeccEEEEEEccCCeE
Confidence             899999999999999999933           22 33344455889999999998  8999999999999999988776


Q ss_pred             eeeee---c------ccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--ceeEEEEec
Q 012996          212 LRNIV---F------PSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST  279 (451)
Q Consensus       212 ~~~~~---~------~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~  279 (451)
                      ...+.   +      ...|+.+.|.| +...+++.+.|..|+|||.+..         .++..++++..  .-....|+.
T Consensus       486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc
Confidence            65543   1      23699999998 4456888899999999999775         33455555432  234456777


Q ss_pred             -CCEEEEEcCCCcEEEEeCCCCc
Q 012996          280 -GDLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       280 -~~~l~s~~~dg~i~iwd~~~~~  301 (451)
                       |.+|++++.|..|++|+.....
T Consensus       557 Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             CCCEEEEeecCceEEEEeCCCCc
Confidence             9999999999999999985443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.4e-29  Score=205.88  Aligned_cols=259  Identities=22%  Similarity=0.360  Sum_probs=225.7

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC-----
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL-----  151 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~-----  151 (451)
                      ..|.+.|..++.......+.+++.|.+.+||.++++.++.++.+|.+.|++++|++.+.++++++.|++..||..     
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~  224 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE  224 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence            458899999999888889999999999999999999999999999999999999999999999999999999973     


Q ss_pred             -cch--------hhhh-hh------------h--cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996          152 -LTV--------FEEC-ES------------Q--RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (451)
Q Consensus       152 -~~~--------~~~~-~~------------~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~  207 (451)
                       ...        .++. ..            .  ..-..++..+.+|.+.|.+..|...+  ..+++++.|.+..+||+.
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVE  302 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--ceeeeeeccccceeeeec
Confidence             110        0000 00            0  01123566788999999999999888  899999999999999999


Q ss_pred             CCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEE
Q 012996          208 KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISG  286 (451)
Q Consensus       208 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~  286 (451)
                      +++++..+. |....+.++-+|..+++++.+.|-+.++||++...        ..+..+++|...|+++.|..+..+++|
T Consensus       303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI--------~sV~VFQGHtdtVTS~vF~~dd~vVSg  374 (481)
T KOG0300|consen  303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI--------QSVAVFQGHTDTVTSVVFNTDDRVVSG  374 (481)
T ss_pred             cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc--------ceeeeecccccceeEEEEecCCceeec
Confidence            999999887 88899999999999999999999999999999653        668899999999999999888899999


Q ss_pred             cCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          287 SEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       287 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                      +.|.+|++||+++. .++.+++. .++++.++.+..++.+|.--.+..|++||+.|..+..
T Consensus       375 SDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             CCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence            99999999999875 57888876 6899999999988899988888889999999987644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.9e-29  Score=211.82  Aligned_cols=247  Identities=21%  Similarity=0.359  Sum_probs=215.6

Q ss_pred             eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce----ee-------------e-ccccCCeeEEEEccCC
Q 012996           73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL----KK-------------W-HAHYRAVTCLVFSEDG  134 (451)
Q Consensus        73 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~  134 (451)
                      ......|.-+|.+++++|++.+.++++.+|+|.-|++.++...    ..             - +.|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3444568889999999999999999999999999999887532    01             1 2788899999999999


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  214 (451)
                      ++|++|+.|..|.||+..+           ...++.+.+|.+.|.+++|-...  ..+++++.|+.|++|++.....+.+
T Consensus       215 kylatgg~d~~v~Iw~~~t-----------~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDT-----------LEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             cEEEecCCCceEEEecCcc-----------cchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHH
Confidence            9999999999999999955           55677799999999999998877  7899999999999999998877776


Q ss_pred             ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEE
Q 012996          215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR  293 (451)
Q Consensus       215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~  293 (451)
                      +. |+..|.++....-++.+-+|+.|+++++|++....          ...+.+|.+.+-|++|-....|++|+.||.|.
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----------qlifrg~~~sidcv~~In~~HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----------QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIA  351 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEeccccc----------eeeeeCCCCCeeeEEEecccceeeccCCceEE
Confidence            65 89999999999999999999999999999996543          33577888999999998888999999999999


Q ss_pred             EEeCCCCceEEEeec-C-----------CCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          294 VWDPITHNIVRMFRL-A-----------KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       294 iwd~~~~~~~~~~~~-~-----------~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      +|++...+++.+.+. |           ...|++|+..|...++|+||.+|.+++|.+..+
T Consensus       352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            999999999887652 1           127899999999999999999999999999876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.2e-28  Score=198.30  Aligned_cols=252  Identities=19%  Similarity=0.201  Sum_probs=207.0

Q ss_pred             eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcch
Q 012996           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  154 (451)
                      +...+.+.|.++.|+|.++.|+++++||.+++||+....+...++ |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus         8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence            444567899999999999999999999999999998886666664 899999999986 557999999999999999652


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (451)
                                  ....+..|..+|.++..++..  ..+++|++|++|++||.+.......+..+..|.++..  .++.|+
T Consensus        86 ------------~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~Lv  149 (323)
T KOG1036|consen   86 ------------NEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLV  149 (323)
T ss_pred             ------------cceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEE
Confidence                        233456799999999999776  7899999999999999998777777776777877765  678999


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC----ceEEEeecC
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRLA  309 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~  309 (451)
                      +|+.+..+.+||+++.....       ...-..-...+.++++-| +.-+++++-||.|.+=.++..    ..-..|+.|
T Consensus       150 Vg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH  222 (323)
T KOG1036|consen  150 VGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH  222 (323)
T ss_pred             EeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence            99999999999999865211       112223456889999999 777888899999888666655    444567766


Q ss_pred             CC---------CeeEEEEEecCceeeeccCCCCccccccCCCCCCCccccc
Q 012996          310 KG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY  351 (451)
Q Consensus       310 ~~---------~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~  351 (451)
                      ..         ||++|+|+|-...||||+.||.|.+||....+....+.++
T Consensus       223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            43         8999999999999999999999999999988777766666

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=225.03  Aligned_cols=232  Identities=19%  Similarity=0.327  Sum_probs=205.0

Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCc------ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGR------LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      |.++||++|+.||.|++|++....      .+..+..|...|+++....+++.|++++.|-+|++|+...         .
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~---------~  105 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK---------D  105 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc---------C
Confidence            467889999999999999985432      3677889999999999999999999999999999999955         2


Q ss_pred             cccceecccCCcCceeEEEE-eecCCeeEEEEeeCCCcEEEEEcCCC--ceeeeee----------cccceeEEEECCCC
Q 012996          164 SHLYLHSFTGHTLRITDIVI-GYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV----------FPSVIDAIALDPAE  230 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~-~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~----------~~~~i~~~~~~~~~  230 (451)
                      ..-+..++..|...|.|+++ .++.  ..+++|+.|+.|.+||+.++  +.+..+.          +..+|++++..+.+
T Consensus       106 ~~~c~stir~H~DYVkcla~~ak~~--~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~  183 (735)
T KOG0308|consen  106 NTFCMSTIRTHKDYVKCLAYIAKNN--ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG  183 (735)
T ss_pred             cchhHhhhhcccchheeeeecccCc--eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence            23567888999999999998 5554  89999999999999999987  2333222          34679999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      ..++.|+.++.+++||.++.         ..+..+++|+..|.++..++ |..++++|+||+|++||+...+++.++..|
T Consensus       184 t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH  254 (735)
T KOG0308|consen  184 TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH  254 (735)
T ss_pred             eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence            99999999999999999997         44667889999999999999 999999999999999999999999999999


Q ss_pred             CCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ...|+++..+|+-.++.+|+.||.|..=++..
T Consensus       255 ~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  255 KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             cCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            99999999999999999999999998877765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=5.5e-29  Score=201.76  Aligned_cols=270  Identities=20%  Similarity=0.318  Sum_probs=215.3

Q ss_pred             EEEeecCCCCCCeEEEECcc------------Ccee---eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEE
Q 012996            3 LLIASSSVADTGIGCWDLES------------GAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWS   67 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~------------~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~   67 (451)
                      .++|||+ .|.+|+|.|++.            |...   ..++....|...|.++.  |+|....|++++.| ++|+++|
T Consensus       125 ~lvATGs-aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~--FHPre~ILiS~srD-~tvKlFD  200 (430)
T KOG0640|consen  125 SLVATGS-ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD--FHPRETILISGSRD-NTVKLFD  200 (430)
T ss_pred             cEEEccC-CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee--ecchhheEEeccCC-CeEEEEe
Confidence            4789999 999999999871            1110   12334446778899999  99999999999999 9999999


Q ss_pred             CCCCcee--ee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCCcEEEEee
Q 012996           68 WSKPQVE--VK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGS  141 (451)
Q Consensus        68 ~~~~~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~  141 (451)
                      +.+....  .+ .....+|.++.|+|.|.+|++|.....+++||+++.++....   .+|.+.|+++.+++.+++.++|+
T Consensus       201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS  280 (430)
T KOG0640|consen  201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS  280 (430)
T ss_pred             cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec
Confidence            9865533  11 224679999999999999999999999999999998876554   56999999999999999999999


Q ss_pred             CCCcEEEeeCcchhhhhhhhcccccceeccc-CCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc
Q 012996          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS  219 (451)
Q Consensus       142 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  219 (451)
                      .||.|++||-           .+..++.++. .|. ..|.+..|..++  +++++.+.|..+++|.+.+++++..+...+
T Consensus       281 kDG~IklwDG-----------VS~rCv~t~~~AH~gsevcSa~Ftkn~--kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  281 KDGAIKLWDG-----------VSNRCVRTIGNAHGGSEVCSAVFTKNG--KYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             cCCcEEeecc-----------ccHHHHHHHHhhcCCceeeeEEEccCC--eEEeecCCcceeeeeeecCCceEEEEecCC
Confidence            9999999997           3455555554 343 468888999988  999999999999999999999998876321


Q ss_pred             ------ceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc
Q 012996          220 ------VIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM  291 (451)
Q Consensus       220 ------~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~  291 (451)
                            .-+...|+....+++.-. ..+.+.-||.++..        +....-.+|.+.+..+.-|| +..+++|+.|-.
T Consensus       348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad--------r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD--------RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             cccchhhhhhhhhcCccceEEccccccCceeeccccchh--------hhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence                  123344555666655443 45678999999875        22333458999999999999 999999999999


Q ss_pred             EEEEeC
Q 012996          292 VRVWDP  297 (451)
Q Consensus       292 i~iwd~  297 (451)
                      +++|--
T Consensus       420 aRFWyr  425 (430)
T KOG0640|consen  420 ARFWYR  425 (430)
T ss_pred             eeeeee
Confidence            999964

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.3e-29  Score=213.23  Aligned_cols=242  Identities=19%  Similarity=0.298  Sum_probs=204.0

Q ss_pred             CCCCeeEEEECCCCcE-EEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           79 PAEPIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      ....|.+++|+|...+ +|+.+ .-.+.||+..+.....++......|.++.|-.||++|++|...|.|+|||+.     
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k-----   98 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK-----   98 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc-----
Confidence            3578999999996654 44433 4579999998888888887788899999999999999999999999999973     


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCC-CCEEEE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA-EHVFYA  235 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~l~~  235 (451)
                            ....+..+..|+.++..+.|+|.+. ..+++|+.|+.+++||+.+......+. |...|.|.+|+|. +..+++
T Consensus        99 ------~r~iLR~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt  171 (487)
T KOG0310|consen   99 ------SRVILRQLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT  171 (487)
T ss_pred             ------cHHHHHHHhhccCceeEEEecccCC-eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence                  3556788999999999999999875 788999999999999999888644554 8899999999995 558999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-ceEEEeecCCCCe
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-NIVRMFRLAKGPV  313 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v  313 (451)
                      |+.||.|++||++...        ..+.++ .|..+|..+.+-| |..+++++. ..|+|||+.+| +.+..+..|...|
T Consensus       172 GsYDg~vrl~DtR~~~--------~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtV  241 (487)
T KOG0310|consen  172 GSYDGKVRLWDTRSLT--------SRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTV  241 (487)
T ss_pred             cCCCceEEEEEeccCC--------ceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceE
Confidence            9999999999999863        233344 5899999999999 888888874 46999999955 5555565699999


Q ss_pred             eEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          314 NNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       314 ~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +|+.+..++..|+++|-|+.+++|++...+
T Consensus       242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~K  271 (487)
T KOG0310|consen  242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYK  271 (487)
T ss_pred             EEEEeecCCceEeecccccceEEEEccceE
Confidence            999999999999999999999999965443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=6.5e-27  Score=209.23  Aligned_cols=286  Identities=13%  Similarity=0.109  Sum_probs=211.2

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~   81 (451)
                      |.++++++ .|+.|.+||+.+++.+..+..+..    +..+.  |+|+++.+++++.+++.|++||..+++.........
T Consensus         1 ~~~~~s~~-~d~~v~~~d~~t~~~~~~~~~~~~----~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866         1 EKAYVSNE-KDNTISVIDTATLEVTRTFPVGQR----PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             CcEEEEec-CCCEEEEEECCCCceEEEEECCCC----CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence            45788998 999999999999998888865432    34456  999999875544444999999998877654433334


Q ss_pred             CeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC-cEEEeeCcchhhhhh
Q 012996           82 PIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~  159 (451)
                      .+..++|+|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+.     
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-----  147 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-----  147 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-----
Confidence            56789999999977654 5689999999998887777653 34468899999999999888775 4667788542     


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCCCceeeeeecc--------cceeEEEECCCC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFP--------SVIDAIALDPAE  230 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~  230 (451)
                            ....... ....+.++.|++++  ..+ +++..++.|++||+.+++.+..+...        .....++|+|++
T Consensus       148 ------~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       148 ------EIVDNVL-VDQRPRFAEFTADG--KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             ------eEEEEEE-cCCCccEEEECCCC--CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence                  1122111 12244678898887  566 45557999999999998877665421        123468899999


Q ss_pred             CEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-cCCCcEEEEeCCCCceEEEee
Q 012996          231 HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       231 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      ++++++ +.++.+.+||..+..         ..... .+...+.+++|+| +.+|+++ +.+|.|.+||+.+++++.+++
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~~~---------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKTYE---------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCc---------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            986654 456789999997653         22222 2445789999999 8888876 568999999999999999998


Q ss_pred             cCCCCeeEEEEEe
Q 012996          308 LAKGPVNNILVVR  320 (451)
Q Consensus       308 ~~~~~v~~l~~s~  320 (451)
                      .. ...+.++++|
T Consensus       289 ~~-~~~~~~~~~~  300 (300)
T TIGR03866       289 VG-RLPWGVVVRP  300 (300)
T ss_pred             cc-cccceeEeCC
Confidence            75 4458888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.3e-29  Score=209.44  Aligned_cols=268  Identities=21%  Similarity=0.289  Sum_probs=212.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      .+|+|+ .||.|+|||+.+..+..+++.|.+.+.++.     +..  ..++++|.| .+|+.|.++.+ ..........+
T Consensus        81 ~~aSGs-~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~-----v~~--~~~~tvgdD-KtvK~wk~~~~-p~~tilg~s~~  150 (433)
T KOG0268|consen   81 TVASGS-CDGEVKIWNLSQRECIRTFKAHEGLVRGIC-----VTQ--TSFFTVGDD-KTVKQWKIDGP-PLHTILGKSVY  150 (433)
T ss_pred             hhhccc-cCceEEEEehhhhhhhheeecccCceeeEE-----ecc--cceEEecCC-cceeeeeccCC-cceeeeccccc
Confidence            478999 999999999999999999999887777665     333  667777777 99999998875 22333446678


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      ..+.-+..++.++++|.  .|.|||.....++..+.-....|.++.|+| ....|++|+.|+.|.+||+++.        
T Consensus       151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~--------  220 (433)
T KOG0268|consen  151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA--------  220 (433)
T ss_pred             cccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC--------
Confidence            88888888888999876  499999999999999988888999999999 4567788889999999999762        


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCCEEEEEeCCC
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                         .+++... -...-+.|+|+|..  ..+++++.|..++.||++.... +.... |.+.|.++.|+|.|+-|++|+.|.
T Consensus       221 ---~Pl~KVi-~~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  221 ---SPLKKVI-LTMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             ---Cccceee-eeccccceecCccc--cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence               2222221 23344678999965  7889999999999999987543 33333 888999999999999999999999


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM  305 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~  305 (451)
                      +|+||..+.+..       ..+ ....-...|.|+.||. ..++++||.|++|++|.....+.+..
T Consensus       295 sIRIf~~~~~~S-------Rdi-YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  295 SIRIFPVNHGHS-------RDI-YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV  352 (433)
T ss_pred             eEEEeecCCCcc-------hhh-hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence            999999987642       111 1111235799999999 99999999999999999776555443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5e-28  Score=206.22  Aligned_cols=286  Identities=16%  Similarity=0.246  Sum_probs=234.5

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~  110 (451)
                      ...+|+++.  |+|..+.++++|.| |++++|.++...   +........+|.+..|.|+|. .+++++....++.||+.
T Consensus       212 s~~~I~sv~--FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQ--FHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEE--ecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            447789999  99999999999999 999999987543   223334577999999999999 88999999999999998


Q ss_pred             CCccee--eecccc-CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996          111 SGRLLK--KWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (451)
Q Consensus       111 ~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (451)
                      +.+...  .+.++. ..+.....+|++++|+..|..|.|.+....+           ...+.++. -.+.|.+++|+.++
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-----------~eli~s~K-ieG~v~~~~fsSds  356 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-----------KELITSFK-IEGVVSDFTFSSDS  356 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-----------hhhhheee-eccEEeeEEEecCC
Confidence            886543  334443 4567788999999999999999999998744           33444444 46789999999887


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCceeeeeecccce--eEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                        ..|++++.+|.|.+||++...+++.+...+.+  +++|.++++.+||+|+..|.|.|||..+.....   .++++..+
T Consensus       357 --k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---~PkPik~~  431 (514)
T KOG2055|consen  357 --KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---NPKPIKTV  431 (514)
T ss_pred             --cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---CCCchhhh
Confidence              88888899999999999999999999866655  567778999999999999999999976643221   23667777


Q ss_pred             ccCCcceeEEEEec-CCEEEEEcC--CCcEEEEeCCCCceEEEeecC---CCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          266 SDHSKAVTCLAYST-GDLLISGSE--DGMVRVWDPITHNIVRMFRLA---KGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       266 ~~~~~~v~~~~~~~-~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ..-...|++|.|++ ..+|+.+|.  +..+++-.+.+......+...   -+.|+|++|||.+.+||.|..+|.+.+|++
T Consensus       432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            77889999999999 888888775  678999999888777766643   346999999999999999999999999986


Q ss_pred             C
Q 012996          340 H  340 (451)
Q Consensus       340 ~  340 (451)
                      +
T Consensus       512 ~  512 (514)
T KOG2055|consen  512 H  512 (514)
T ss_pred             c
Confidence            5

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=5e-27  Score=213.91  Aligned_cols=314  Identities=20%  Similarity=0.262  Sum_probs=230.1

Q ss_pred             EEeecCCCCCCeEEEECccCcee----eeeecCCCCCCceEEecceEeecc--CcccCCCCCCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQ----LRYKSCASPPHGLACVGQRFLASS--QLREQPSASSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~d~g~i~vw~~~~~~~~~~~   77 (451)
                      .++++. .++.+.||+..+++..    ..+...  ....|+++   ++|.-  +.++.|+.. |.+.+|++++++.....
T Consensus       126 ~lia~d-~~~~l~vw~~s~~~~e~~l~~~~~~~--~~~~Ital---~HP~TYLNKIvvGs~~-G~lql~Nvrt~K~v~~f  198 (910)
T KOG1539|consen  126 HLIAVD-ISNILFVWKTSSIQEELYLQSTFLKV--EGDFITAL---LHPSTYLNKIVVGSSQ-GRLQLWNVRTGKVVYTF  198 (910)
T ss_pred             eEEEEE-ccCcEEEEEeccccccccccceeeec--cCCceeeE---ecchhheeeEEEeecC-CcEEEEEeccCcEEEEe
Confidence            355666 7999999998874211    111111  11225544   44542  446677777 99999999999987664


Q ss_pred             c-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcchh
Q 012996           78 L-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        78 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~  155 (451)
                      . +...|+++.-+|--..+|.|..+|.|.+++++.++.+.+++...+.|+.++|..||.. +++|+..|.+.+||++.. 
T Consensus       199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-  277 (910)
T KOG1539|consen  199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-  277 (910)
T ss_pred             cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC-
Confidence            4 5689999999999999999999999999999999999999866799999999998865 556667799999999542 


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc----eeee-----------------
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR----LLRN-----------------  214 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~-----------------  214 (451)
                               .........|.+.|....|.+..  ..+++++.|+.+++|=..++.    .++.                 
T Consensus       278 ---------kl~~v~~nah~~sv~~~~fl~~e--pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  278 ---------KLINVTRNAHYGSVTGATFLPGE--PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             ---------eeeeeeeccccCCcccceecCCC--ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence                     11111222455555555555544  455555555554444222100    0000                 


Q ss_pred             --------------------------------------------------------------------------------
Q 012996          215 --------------------------------------------------------------------------------  214 (451)
Q Consensus       215 --------------------------------------------------------------------------------  214 (451)
                                                                                                      
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence                                                                                            


Q ss_pred             ------------eec------ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee---ccCCccee
Q 012996          215 ------------IVF------PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL---SDHSKAVT  273 (451)
Q Consensus       215 ------------~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~  273 (451)
                                  +.+      ...+.+++.++.|++.+.|+..|.|-+|++.++..         ...+   ..|..+|+
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---------r~sf~~~~ah~~~V~  497 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---------RKSFGDSPAHKGEVT  497 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee---------ecccccCccccCcee
Confidence                        000      01578899999999999999999999999998742         2233   57999999


Q ss_pred             EEEEec-CCEEEEEcCCCcEEEEeCCCCceE-----------------------------------------EEeecCCC
Q 012996          274 CLAYST-GDLLISGSEDGMVRVWDPITHNIV-----------------------------------------RMFRLAKG  311 (451)
Q Consensus       274 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~-----------------------------------------~~~~~~~~  311 (451)
                      +++... ++.+++++.+|.+++||.....++                                         +.|.+|.+
T Consensus       498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n  577 (910)
T KOG1539|consen  498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN  577 (910)
T ss_pred             EEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc
Confidence            999999 999999999999999998765532                                         23348999


Q ss_pred             CeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996          312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       312 ~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~  345 (451)
                      .|++++|||||++|++++.|++|++||+.++.+.
T Consensus       578 ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  578 RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             ceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence            9999999999999999999999999999887653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.96  E-value=6.4e-28  Score=207.39  Aligned_cols=295  Identities=17%  Similarity=0.204  Sum_probs=228.6

Q ss_pred             CeEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC--ceee-ee
Q 012996            1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--QVEV-KS   77 (451)
Q Consensus         1 ~e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~~~~-~~   77 (451)
                      ||++.++.+  ...+++||.........+..+.. ..++..+.  |.....+++.....|..+++|.-...  .++. ..
T Consensus         2 qeNl~~aS~--gd~~kl~D~s~~~~~~~~~~~t~-~pg~~s~~--w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k   76 (673)
T KOG4378|consen    2 QENLHVAST--GDKTKLSDFSDLETKSEYVHQTA-EPGDFSFN--WQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK   76 (673)
T ss_pred             Ccceeeecc--CCceEEeecccccCccccccCCC-CCcceeee--ccccceEEEeecCCceeEEEecccCCCCccceeec
Confidence            566655555  34799999987777766655554 44588777  87776543333333489999986544  2322 22


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      ...+.-.|++......|+++|+..+.|+|||++...+.+.+++|...|+++.+...+.+|++++..|.|.|..+.+.   
T Consensus        77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---  153 (673)
T KOG4378|consen   77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---  153 (673)
T ss_pred             cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---
Confidence            33445566666666699999999999999999977778888999999999999999999999999999999999652   


Q ss_pred             hhhhcccccceecccCC-cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC-CCCEE
Q 012996          158 CESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP-AEHVF  233 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l  233 (451)
                              .....|... ...|.-+.+++... .+|.+++.+|.|.+||+....++..+.  |..+...+||+| +..+|
T Consensus       154 --------~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  154 --------QKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             --------ccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence                    222233322 33456788888764 678889999999999998888887765  889999999999 56678


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCC
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKG  311 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~  311 (451)
                      ++.+.|..|.+||.+....         ...+ ....+.+.++|++ |.+|+.|...|.|..||++. ..++..+..|..
T Consensus       225 vsVG~Dkki~~yD~~s~~s---------~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~  294 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRSQAS---------TDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA  294 (673)
T ss_pred             EEecccceEEEeecccccc---------ccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence            8889999999999987532         2222 2457899999999 99999999999999999985 568999999999


Q ss_pred             CeeEEEEEecC
Q 012996          312 PVNNILVVRRP  322 (451)
Q Consensus       312 ~v~~l~~s~~~  322 (451)
                      .|++++|-|..
T Consensus       295 sVt~vafq~s~  305 (673)
T KOG4378|consen  295 SVTRVAFQPSP  305 (673)
T ss_pred             ceeEEEeeecc
Confidence            99999998864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=2.8e-28  Score=210.50  Aligned_cols=269  Identities=17%  Similarity=0.261  Sum_probs=207.0

Q ss_pred             EEEeecCCCCCCeEEEECccC----ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----
Q 012996            3 LLIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----   74 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----   74 (451)
                      ..|++|+ .|-+|++||+...    ...+.+..+.+  +.|.++.  |++.|..+++.+.. ...+|+|-+..+..    
T Consensus       180 aR~~sGs-~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~--ys~Tg~~iLvvsg~-aqakl~DRdG~~~~e~~K  253 (641)
T KOG0772|consen  180 ARFVSGS-LDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQ--YSVTGDQILVVSGS-AQAKLLDRDGFEIVEFSK  253 (641)
T ss_pred             ceeeecc-ccceEEEEecccccccchhhhccCcccc--cccceee--ecCCCCeEEEEecC-cceeEEccCCceeeeeec
Confidence            4689999 9999999998632    33344444433  4577777  99999888887776 89999997654432    


Q ss_pred             ---------eeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcc-eeee-----ccccCCeeEEEEccCCcEEE
Q 012996           75 ---------VKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSEDGSFLI  138 (451)
Q Consensus        75 ---------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~l~  138 (451)
                               ....|...++|.+|+|.. ..+++++.||+++|||+...+. +..+     .+..-+++.++|++|++.|+
T Consensus       254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA  333 (641)
T KOG0772|consen  254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA  333 (641)
T ss_pred             cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence                     223477789999999954 5788999999999999976643 3333     23445789999999999999


Q ss_pred             EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC--ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeee
Q 012996          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI  215 (451)
Q Consensus       139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~  215 (451)
                      +|..||.|.+|+....        ........-..|..  .|+++.|+++|  ++|++-+.|+++++||++..+ ++...
T Consensus       334 agc~DGSIQ~W~~~~~--------~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  334 AGCLDGSIQIWDKGSR--------TVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             hcccCCceeeeecCCc--------ccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccccchhhh
Confidence            9999999999998542        12223334456776  99999999999  899999999999999999754 33333


Q ss_pred             e---cccceeEEEECCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996          216 V---FPSVIDAIALDPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (451)
Q Consensus       216 ~---~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s  285 (451)
                      .   ...+-+.++|+|+.+++++|+.      .|.+++||..+.         ..+..+.-....|..+.|+| -+.|++
T Consensus       404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecchhhheee
Confidence            2   3456788999999999999864      568999998875         44556666678899999999 777888


Q ss_pred             EcCCCcEEEEe
Q 012996          286 GSEDGMVRVWD  296 (451)
Q Consensus       286 ~~~dg~i~iwd  296 (451)
                      |+.||++++|=
T Consensus       475 gsgdG~~~vyY  485 (641)
T KOG0772|consen  475 GSGDGTAHVYY  485 (641)
T ss_pred             ecCCCceEEEE
Confidence            88899998863

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2.6e-27  Score=211.58  Aligned_cols=259  Identities=16%  Similarity=0.278  Sum_probs=211.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEE-ecceEee-ccCcccCCCCCCccEEEEECCCCcee-eeecC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC-VGQRFLA-SSQLREQPSASSGSILYWSWSKPQVE-VKSLP   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~   79 (451)
                      ..+++++ .||++++|+-...+.+.+ ....+|.+.+.+ ++  |.+ ++-.+++|+.| .+|.+|...+.... ....|
T Consensus        26 ~~i~s~s-Rd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~D-~~i~v~~~~~~~P~~~LkgH  100 (745)
T KOG0301|consen   26 VCIISGS-RDGTVKVWAKKGKQYLET-HAFEGPKGFIANSIC--YAESDKGRLVVGGMD-TTIIVFKLSQAEPLYTLKGH  100 (745)
T ss_pred             eEEeecC-CCCceeeeeccCcccccc-eecccCcceeeccce--eccccCcceEeeccc-ceEEEEecCCCCchhhhhcc
Confidence            4678888 999999999654444332 223345555655 55  665 34457888888 99999999877765 44679


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...|.|++...++. +++|+.|.++++|.  .+++...+.+|...|+++...|++ .++||+.|.+|++|.-        
T Consensus       101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--------  168 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--------  168 (745)
T ss_pred             ccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--------
Confidence            99999999888887 99999999999996  467778899999999999999987 7999999999999986        


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                           ...++++.+|...|+++++-++.   .+++++.||.|++|++ +++.+..+. |..-++++...+++..+++++.
T Consensus       169 -----~~~l~tf~gHtD~VRgL~vl~~~---~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  169 -----GTLLKTFSGHTDCVRGLAVLDDS---HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             -----CchhhhhccchhheeeeEEecCC---CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence                 34788999999999999999884   7999999999999999 566655554 8999999999899999999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~  298 (451)
                      |+++++|+...           +.+.+.-....|+++.+-+..-+++|++||.|+||...
T Consensus       240 DrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  240 DRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CceEEEeecCc-----------eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            99999999863           23444444558888888775557889999999999765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=8.9e-28  Score=215.17  Aligned_cols=276  Identities=17%  Similarity=0.257  Sum_probs=222.0

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeec----------------------------------CCCCCCceEEecceEee
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKS----------------------------------CASPPHGLACVGQRFLA   48 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~~~~   48 (451)
                      ..++|++ .|++|++||+..+..-..++.                                  ...+..++.+++  .+|
T Consensus       393 ~cF~TCS-sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~--vSp  469 (1080)
T KOG1408|consen  393 GCFTTCS-SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA--VSP  469 (1080)
T ss_pred             cceeEec-CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE--ECC
Confidence            3578999 999999999986332211110                                  012445788888  999


Q ss_pred             ccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECC---CCcEEEEeccCCCEEEEEcCCC-cceeeeccccC
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYR  123 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~  123 (451)
                      +|++||+|..- |+++||++....... ...|...|.|+.|+.   ..++||+++.|..|.|||+... .++.++.+|..
T Consensus       470 ~gqhLAsGDr~-GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs  548 (1080)
T KOG1408|consen  470 DGQHLASGDRG-GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS  548 (1080)
T ss_pred             CcceecccCcc-CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence            99999999988 999999998766553 356899999999985   3578999999999999999654 66788999999


Q ss_pred             CeeEEEEccCC--cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          124 AVTCLVFSEDG--SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       124 ~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      .|+++.|..+|  ..+++++.|..|.+--......      ...-+..+-......++++++.|..  .++++++.|..|
T Consensus       549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~------g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v~t~cQDrni  620 (1080)
T KOG1408|consen  549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASS------GRLFPRHTQTLSKTTLYDMAVDPTS--KLVVTVCQDRNI  620 (1080)
T ss_pred             ceeEEEEeecCCceEEEeccCchhhheehhccccC------ceeccccccccccceEEEeeeCCCc--ceEEEEecccce
Confidence            99999998876  6789999997765433221000      0000111122234578899998887  899999999999


Q ss_pred             EEEEcCCCceeeeee----cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996          202 KVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (451)
Q Consensus       202 ~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  277 (451)
                      +|||+.+++..+.|.    +.+..-.+..+|.|.|+++.+.|.++.++|+.++         +++.++.+|...|+.+.|
T Consensus       621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKF  691 (1080)
T ss_pred             EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeee
Confidence            999999999999987    5577888999999999999999999999999987         678899999999999999


Q ss_pred             ec-CCEEEEEcCCCcEEEEeCCC
Q 012996          278 ST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       278 ~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      .+ -+.|++.+.||.|.||.+..
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cccchhheeecCCceEEEEECch
Confidence            99 89999999999999999764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.2e-26  Score=176.13  Aligned_cols=271  Identities=17%  Similarity=0.301  Sum_probs=214.9

Q ss_pred             EEeecCCCCCCeEEEECccCce------------eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC
Q 012996            4 LIASSSVADTGIGCWDLESGAE------------QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP   71 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~   71 (451)
                      +.|+|+ ...+++|--...-..            ...++...-|...|.|.+  |+|+|+++++++.| .+|++..++..
T Consensus        46 lyavgs-nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~geliatgsnd-k~ik~l~fn~d  121 (350)
T KOG0641|consen   46 LYAVGS-NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGELIATGSND-KTIKVLPFNAD  121 (350)
T ss_pred             eEEecc-CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccCeEEecCCC-ceEEEEecccc
Confidence            567788 888888875431111            112233345778899999  99999999999998 99999887644


Q ss_pred             cee------eeecCCCCeeEEEECC----CCcEEEEec-cCCCEEEEEcCCCcceeeeccccCCeeEE-EEccCCcEEEE
Q 012996           72 QVE------VKSLPAEPIKPIAANS----HGTYIAGGG-QSGDIYMWEVASGRLLKKWHAHYRAVTCL-VFSEDGSFLIS  139 (451)
Q Consensus        72 ~~~------~~~~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s  139 (451)
                      ...      ....|.+.|..++|-.    .+.+|++++ .|..|++-|...|+....+.+|.+.|.++ .|  ++-.+++
T Consensus       122 t~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~s  199 (350)
T KOG0641|consen  122 TCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFAS  199 (350)
T ss_pred             cccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEc
Confidence            322      3345889999999954    356777654 46778888999999999999999999887 34  4789999


Q ss_pred             eeCCCcEEEeeCcchhhhhhhhcccccceeccc----C---CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee
Q 012996          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT----G---HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL  212 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~---~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  212 (451)
                      |+.|.+|++||++-           ..++.++.    +   .+..|.++++.|.+  ++|++|-.|....+||++.++++
T Consensus       200 gsqdktirfwdlrv-----------~~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~lydirg~r~i  266 (350)
T KOG0641|consen  200 GSQDKTIRFWDLRV-----------NSCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLYDIRGGRMI  266 (350)
T ss_pred             cCCCceEEEEeeec-----------cceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEEEeeCCcee
Confidence            99999999999954           22222221    1   23678899998988  89999999999999999999999


Q ss_pred             eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996          213 RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       213 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      +.+. |...|.++.|+|...++++++.|..|++-|+......     .-++.....|...+..+.|+| .--+++.+.|.
T Consensus       267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-----el~~~vv~ehkdk~i~~rwh~~d~sfisssadk  341 (350)
T KOG0641|consen  267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-----ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK  341 (350)
T ss_pred             eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-----cCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence            9887 8899999999999999999999999999999764311     123556677999999999999 88899999999


Q ss_pred             cEEEEeCC
Q 012996          291 MVRVWDPI  298 (451)
Q Consensus       291 ~i~iwd~~  298 (451)
                      ++.+|-++
T Consensus       342 t~tlwa~~  349 (350)
T KOG0641|consen  342 TATLWALN  349 (350)
T ss_pred             eEEEeccC
Confidence            99999764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=197.90  Aligned_cols=271  Identities=15%  Similarity=0.224  Sum_probs=211.8

Q ss_pred             CCCCCCccEEEEECCCCceeeeecCCCC--eeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeeccccCCeeEEEEc
Q 012996           55 QPSASSGSILYWSWSKPQVEVKSLPAEP--IKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFS  131 (451)
Q Consensus        55 ~~~~d~g~i~vw~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  131 (451)
                      +++.|...+.+||+.++...........  -.++..- .+.|++++.. ...|.+|.+...........-.++|.+++-+
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS   90 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence            3344547799999999887665543211  1111111 2356666543 3469999987665554444456889999999


Q ss_pred             cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC----
Q 012996          132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL----  207 (451)
Q Consensus       132 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~----  207 (451)
                      |+|.+|+.|+..|.|++|.+.+           ...+..+..|-..|+++.|+.++  .+|+||+.||.|.+|++.    
T Consensus        91 n~G~~l~ag~i~g~lYlWelss-----------G~LL~v~~aHYQ~ITcL~fs~dg--s~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSS-----------GILLNVLSAHYQSITCLKFSDDG--SHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             CCceEEEeecccCcEEEEEecc-----------ccHHHHHHhhccceeEEEEeCCC--cEEEecCCCccEEEEEEEeecc
Confidence            9999999998999999999954           56777889999999999999998  899999999999999874    


Q ss_pred             -----CCceeeeee-cccceeEEEECCC--CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          208 -----KGRLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       208 -----~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                           +-++...+. |.-+|+.+...+.  ..++++++.|.++++||+..+.         .+.++ .....+.+++.+|
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---------LLlti-~fp~si~av~lDp  227 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---------LLLTI-TFPSSIKAVALDP  227 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce---------eeEEE-ecCCcceeEEEcc
Confidence                 234555665 7778999888764  5789999999999999999873         33333 2467899999999


Q ss_pred             -CCEEEEEcCCCcEEEEeCCC----------------CceEEEeecCCC--CeeEEEEEecCceeeeccCCCCccccccC
Q 012996          280 -GDLLISGSEDGMVRVWDPIT----------------HNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       280 -~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                       +..++.|+.+|.|.+.++..                +..+..+.+|.+  +|+|++.+-||..|++|+.||.+++||+.
T Consensus       228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence             99999999999999887643                234556778888  99999999999999999999999999999


Q ss_pred             CCCCCCccc
Q 012996          341 GSQLPPPLD  349 (451)
Q Consensus       341 ~~~~~~~~~  349 (451)
                      ..++...+.
T Consensus       308 S~Q~iRtl~  316 (476)
T KOG0646|consen  308 SKQCIRTLQ  316 (476)
T ss_pred             hHHHHHHHh
Confidence            887765544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.4e-27  Score=203.36  Aligned_cols=252  Identities=14%  Similarity=0.216  Sum_probs=200.7

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----------eeecCCCCeeEEEECCC-CcEEEEeccCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSH-GTYIAGGGQSG  102 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----------~~~~~~~~v~~~~~~~~-~~~l~~~~~dg  102 (451)
                      |.+.|.-+.  +.|....++++..+++.|.|||..+..-.           ....|...-+.++|++. .-.|++|+.|+
T Consensus       123 h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  123 HDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             CCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            444444444  88988888887777799999998632211           33446666788999884 45788999999


Q ss_pred             CEEEEEcCCCc-------ceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996          103 DIYMWEVASGR-------LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus       103 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      .|.+||+....       ....+.+|...|..++|++ +...|++++.|+.+.|||+++         ....+.+...+|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---------~~~~~~~~~~ah  271 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---------NTSKPSHSVKAH  271 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---------CCCCCccccccc
Confidence            99999996543       3456789999999999999 667899999999999999975         234456677889


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCC
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      .+.|.|++|+|.+. ..||+|+.|++|++||+|+.. ++..+. |...|.++.|+| ....|++++.|+.+.+||+..-.
T Consensus       272 ~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             CCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            99999999999874 899999999999999999753 455555 889999999999 56788999999999999997643


Q ss_pred             CCCC-----CCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996          252 PSTS-----SYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       252 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~  298 (451)
                      ....     .....++....||...|..+.|+|  .-.+++.+.|+.+.||...
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            2221     123455677889999999999999  5678888999999999975

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.9e-29  Score=224.89  Aligned_cols=246  Identities=20%  Similarity=0.350  Sum_probs=220.3

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  140 (451)
                      -.+++|+....     ..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|++|
T Consensus        14 t~Lr~~~~~~~-----~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag   88 (825)
T KOG0267|consen   14 TKLRVWDTREF-----VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG   88 (825)
T ss_pred             eccccccchhh-----hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc
Confidence            56677775432     3367788888887788999999999999999998888888899999999999999999999999


Q ss_pred             eCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-ccc
Q 012996          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS  219 (451)
Q Consensus       141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~  219 (451)
                      +.+|+|++||+..           ...++++.+|...+.++.|+|-+  .+.++|+.|+.+++||++..-+...+. |..
T Consensus        89 sasgtiK~wDlee-----------Ak~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   89 SASGTIKVWDLEE-----------AKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             ccCCceeeeehhh-----------hhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcc
Confidence            9999999999954           55678999999999999999998  899999999999999999888888777 788


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      .+..+.|+|+|++++.|+.|..+++||+..+         .....+..|...+.++.|+| .-++++|+.|++|++||++
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            8999999999999999999999999999887         55778899999999999999 8899999999999999999


Q ss_pred             CCceEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996          299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (451)
Q Consensus       299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~  333 (451)
                      +.+.+.........|.++.|+|++..+++|.....
T Consensus       227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence            99999988888889999999999999998865543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.8e-27  Score=223.30  Aligned_cols=263  Identities=21%  Similarity=0.281  Sum_probs=215.5

Q ss_pred             ecCCCCeeEEEECCCCcEEEEec--cCCCEEEEEcCC------------CcceeeeccccCCeeEEEEccCCcEEEEeeC
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGG--QSGDIYMWEVAS------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE  142 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  142 (451)
                      .++...|.+++.+|+|..+|+|+  .||.+.||+...            .+.+.++..|.+.|+|+.|+|||++||+|++
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            33466799999999999999999  899999998642            2455677889999999999999999999999


Q ss_pred             CCcEEEeeCcchh--h-----hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee
Q 012996          143 DGCVRIWSLLTVF--E-----ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (451)
Q Consensus       143 dg~i~vwd~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  215 (451)
                      |+.|.||+.....  .     ..............+.+|...|.+++|+|++  .++++++.|++|.+|+.++.+.+..+
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceeeeee
Confidence            9999999987310  0     1112234556778899999999999999988  89999999999999999999888888


Q ss_pred             e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc------CCcceeEEEEec-CCEEEEEc
Q 012996          216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      . |.+.|..+.|+|-|++|++-+.|++|++|++....         ....+.+      .......+.||| |.+|++..
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ecccccccceEECCccCeeeeecCCceEEEEEcccce---------eeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            7 89999999999999999999999999999976632         2222222      234678899999 99999974


Q ss_pred             C----CCcEEEEeCCCCceEEEeecCCCCeeEEEEEec-----Cc------------eeeeccCCCCccccccCCCCCCC
Q 012996          288 E----DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-----PL------------YLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       288 ~----dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~------------~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                      .    -.++.|.+-.+.+.-..+-+|.+++.++.|+|.     ..            .+|+||.|+++-||.....++.-
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence            3    346899998888888899999999999999971     11            57999999999999987655544


Q ss_pred             cccc
Q 012996          347 PLDK  350 (451)
Q Consensus       347 ~~~~  350 (451)
                      ....
T Consensus       319 vi~~  322 (942)
T KOG0973|consen  319 VIHN  322 (942)
T ss_pred             hhhh
Confidence            4333

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=4.2e-27  Score=208.30  Aligned_cols=321  Identities=17%  Similarity=0.257  Sum_probs=227.5

Q ss_pred             CeEEEeecCCCCCCeEEEECccCcee---eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--
Q 012996            1 MELLIASSSVADTGIGCWDLESGAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--   75 (451)
Q Consensus         1 ~e~~l~s~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--   75 (451)
                      ||-+||.+. .||.|.++|...-...   +.|+....|-+.|..+.  |.|....|++++.| .++++||+++..+.-  
T Consensus        63 ~eHiLavad-E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wapge~~lVsasGD-sT~r~Wdvk~s~l~G~~  138 (720)
T KOG0321|consen   63 KEHILAVAD-EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAPGESLLVSASGD-STIRPWDVKTSRLVGGR  138 (720)
T ss_pred             ccceEEEec-CCCceeeecchhhhcchhhhhhcccccccceeEeec--cCCCceeEEEccCC-ceeeeeeeccceeecce
Confidence            577899999 9999999997643322   33556667889999999  99977777888887 999999999877653  


Q ss_pred             -eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCc--------------------c-------eeeeccccCCee
Q 012996           76 -KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR--------------------L-------LKKWHAHYRAVT  126 (451)
Q Consensus        76 -~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------------------~-------~~~~~~~~~~v~  126 (451)
                       ...|...|.+++|.|. ...|++|+.||.|.|||++-..                    .       +.....+...|.
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence             4668999999999995 5678999999999999985321                    0       111223444555


Q ss_pred             E---EEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCC---cCceeEEEEeecCCeeEEEEeeCCC
Q 012996          127 C---LVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGH---TLRITDIVIGYGGVSATIVSASEDR  199 (451)
Q Consensus       127 ~---~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~~l~s~~~d~  199 (451)
                      +   +.+..|...|++++. |+.|+|||+++.........   .....+..|   ...+.++.....|  .++++.+.|+
T Consensus       219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep---~~~~~~~t~skrs~G~~nL~lDssG--t~L~AsCtD~  293 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP---RGSDKYPTHSKRSVGQVNLILDSSG--TYLFASCTDN  293 (720)
T ss_pred             eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC---CcccCccCcccceeeeEEEEecCCC--CeEEEEecCC
Confidence            4   555568888999888 99999999987544332221   112222333   3455666665555  7888888899


Q ss_pred             cEEEEEcCCCce--eeeeec---ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996          200 TCKVWSLLKGRL--LRNIVF---PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (451)
Q Consensus       200 ~i~iwd~~~~~~--~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  274 (451)
                      .|++|++.+-..  +..+.+   ...-..-..+|++.++++|+.|...++|.+....        .....+.+|...|++
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~  365 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------APPALLLGHTREVTT  365 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------CChhhhhCcceEEEE
Confidence            999999986432  222221   1112234568999999999999999999999875        556678899999999


Q ss_pred             EEEec--CCEEEEEcCCCcEEEEeCCCCc--------------eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          275 LAYST--GDLLISGSEDGMVRVWDPITHN--------------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       275 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ++|.|  -.-+++++.|..++||++..+-              ....+++|.-.+..+.++-.+.+..-.  .+..++|.
T Consensus       366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s  443 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS  443 (720)
T ss_pred             EeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhcccccc
Confidence            99999  5567778999999999986542              233455666666666666544433332  44555555


Q ss_pred             cC
Q 012996          339 RH  340 (451)
Q Consensus       339 ~~  340 (451)
                      ..
T Consensus       444 sP  445 (720)
T KOG0321|consen  444 SP  445 (720)
T ss_pred             Cc
Confidence            44

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.5e-28  Score=218.37  Aligned_cols=275  Identities=17%  Similarity=0.202  Sum_probs=219.0

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeee----cC----CCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC---Cc
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS----LP----AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GR  113 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~----~~----~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~  113 (451)
                      ..++-..++.+|.  ..+.||.++........    ..    .-.+..+.|.. +.++||+++.+|.|.+||+..   .+
T Consensus        47 ~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk  124 (839)
T KOG0269|consen   47 VNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK  124 (839)
T ss_pred             ecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccch
Confidence            5567777888887  58899987654332111    11    12345667764 578999999999999999987   56


Q ss_pred             ceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996          114 LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      ++..|..|...++++.|++ ...+|++|+.||.|++||++.           .....++.+....|.++.|+|... ..+
T Consensus       125 ~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----------~~S~~t~~~nSESiRDV~fsp~~~-~~F  192 (839)
T KOG0269|consen  125 LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----------KKSKSTFRSNSESIRDVKFSPGYG-NKF  192 (839)
T ss_pred             hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-----------ccccccccccchhhhceeeccCCC-ceE
Confidence            7788999999999999998 667899999999999999965           334566777889999999999864 899


Q ss_pred             EEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          193 VSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      +++...|.+++||++.... ...+. |.++|.++.|+|++.+||+|+.|+.|+|||+.+...       .+..++. ...
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~tIn-Tia  264 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------KPKHTIN-TIA  264 (839)
T ss_pred             EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------cceeEEe-ecc
Confidence            9999999999999987543 33343 999999999999999999999999999999987542       2232332 357


Q ss_pred             ceeEEEEec--CCEEEEEcC--CCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccCCC
Q 012996          271 AVTCLAYST--GDLLISGSE--DGMVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       271 ~v~~~~~~~--~~~l~s~~~--dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      +|.++.|-|  ...|++++.  |-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||++..-.++..
T Consensus       265 pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  265 PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            999999999  667777764  778999999754 46678999999999999976 6678899999999877665543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.3e-26  Score=205.53  Aligned_cols=319  Identities=18%  Similarity=0.169  Sum_probs=249.0

Q ss_pred             eEEEeecCCCCCCeEEEECccCce---------------------eeeee-------cCCCCCCceEEecceEeeccCcc
Q 012996            2 ELLIASSSVADTGIGCWDLESGAE---------------------QLRYK-------SCASPPHGLACVGQRFLASSQLR   53 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~---------------------~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l   53 (451)
                      +++||+++ +|..||||.+.-+..                     ..++.       ...+|.+.|.++-  |+|.+..|
T Consensus       206 ~~~laS~S-QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~--W~p~~~~L  282 (764)
T KOG1063|consen  206 DLLLASSS-QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW--WHPEGLDL  282 (764)
T ss_pred             cEEEEecC-CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE--Eccchhhh
Confidence            57899999 999999998764331                     11111       1236888898888  99999999


Q ss_pred             cCCCCCCccEEEEECCCCcee----eee----cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC---cceeeecccc
Q 012996           54 EQPSASSGSILYWSWSKPQVE----VKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHY  122 (451)
Q Consensus        54 ~~~~~d~g~i~vw~~~~~~~~----~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~  122 (451)
                      ++++.| .++.+|.-....-.    .+.    .........-|+|+++.+++-+..|..++|...+.   .......+|.
T Consensus       283 LSASaD-ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~  361 (764)
T KOG1063|consen  283 LSASAD-KSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV  361 (764)
T ss_pred             eecccC-cceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence            999998 99999987755311    111    12456889999999999999999999999984332   2344568999


Q ss_pred             CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~  202 (451)
                      +.|.++.|+|.|.+|++.|.|-+-+++-.-..       ......+...+.|...++|+++-+..  ..+++|.....+|
T Consensus       362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~-------q~~wHEiaRPQiHGyDl~c~~~vn~~--~~FVSgAdEKVlR  432 (764)
T KOG1063|consen  362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR-------QQEWHEIARPQIHGYDLTCLSFVNED--LQFVSGADEKVLR  432 (764)
T ss_pred             ccceeeeecCCCCEEEEeccccceeeeccccc-------ccceeeecccccccccceeeehccCC--ceeeecccceeee
Confidence            99999999999999999999999999876310       01233445556788899999998854  7899999999999


Q ss_pred             EEEcCC----------C----------------------ceee-------------------------------------
Q 012996          203 VWSLLK----------G----------------------RLLR-------------------------------------  213 (451)
Q Consensus       203 iwd~~~----------~----------------------~~~~-------------------------------------  213 (451)
                      +|+...          +                      +...                                     
T Consensus       433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~  512 (764)
T KOG1063|consen  433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN  512 (764)
T ss_pred             eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence            998731          0                      0000                                     


Q ss_pred             --------eeecccceeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996          214 --------NIVFPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (451)
Q Consensus       214 --------~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  279 (451)
                              .+.|...|.+++.+|+++++++++...     .|++|+..+.         .....+.+|+-.|+.|+||| 
T Consensus       513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpd  583 (764)
T KOG1063|consen  513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPD  583 (764)
T ss_pred             ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCC
Confidence                    001233799999999999999998654     6999998875         44567899999999999999 


Q ss_pred             CCEEEEEcCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          280 GDLLISGSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       280 ~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      +++|++.|.|.++.+|......    .....+.|.--|++..|+|++.+|+|+|.|..|++|.....
T Consensus       584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            9999999999999999874322    23346789899999999999999999999999999998765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=6.4e-26  Score=182.80  Aligned_cols=291  Identities=15%  Similarity=0.175  Sum_probs=217.1

Q ss_pred             EEEeecCCCCCCeEEEECccCc------------eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC
Q 012996            3 LLIASSSVADTGIGCWDLESGA------------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK   70 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~   70 (451)
                      -++++|+ .||.|.|||++...            ++-.-+...+|..+|..+-  |.|-..-+++.++-|.+++|||.++
T Consensus        57 rymlSGg-adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~--WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   57 RYMLSGG-ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI--WYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             eEEeecC-CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE--EeeecCceeecccccceEEEeeccc
Confidence            5789999 99999999987443            1111122345667777777  8886666555555559999999999


Q ss_pred             CceeeeecCCCCeeEEEECCC---CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcE
Q 012996           71 PQVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCV  146 (451)
Q Consensus        71 ~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i  146 (451)
                      .+.......++.|.+-+++|-   ..++|+|..+-.|++-|+.+|..-.++.+|.+.|.++.|+|...+ |++|+.||.|
T Consensus       134 lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i  213 (397)
T KOG4283|consen  134 LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI  213 (397)
T ss_pred             ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence            998888888899999999983   457888899999999999999999999999999999999996655 7799999999


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEE
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL  226 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~  226 (451)
                      ++||++..          ..+...+..|..                        .     +.........|.+.+..++|
T Consensus       214 rlWDiRra----------sgcf~~lD~hn~------------------------k-----~~p~~~~n~ah~gkvngla~  254 (397)
T KOG4283|consen  214 RLWDIRRA----------SGCFRVLDQHNT------------------------K-----RPPILKTNTAHYGKVNGLAW  254 (397)
T ss_pred             EEEEeecc----------cceeEEeecccC------------------------c-----cCccccccccccceeeeeee
Confidence            99999541          011111222211                        0     00111123347889999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE
Q 012996          227 DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM  305 (451)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~  305 (451)
                      ..++.++++++.|.++++|+...+......++...-. ...|. .+. +. +- ...++---.++.+.++++-++..++.
T Consensus       255 tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n-~~~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~  330 (397)
T KOG4283|consen  255 TSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN-QTTSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRR  330 (397)
T ss_pred             cccchhhhhccCccceEEeecccCccccccccccccc-ccccc-eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEe
Confidence            9999999999999999999998876443333221111 11111 111 22 22 34455455669999999999999999


Q ss_pred             eecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          306 FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       306 ~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      +..|...|.+.++-|+-+...++..|+.+..|..
T Consensus       331 l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  331 LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eecccceeeEEeecCchhhhhccccCCccccccc
Confidence            9999889999999999999999999999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.7e-25  Score=200.04  Aligned_cols=270  Identities=12%  Similarity=0.119  Sum_probs=199.7

Q ss_pred             cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE
Q 012996           52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF  130 (451)
Q Consensus        52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  130 (451)
                      .+++++.+ +.|.+||..+++..........+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+.|
T Consensus         3 ~~~s~~~d-~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~   80 (300)
T TIGR03866         3 AYVSNEKD-NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL   80 (300)
T ss_pred             EEEEecCC-CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence            45566666 99999999887765554444567889999999876 5667889999999999888777765544 567899


Q ss_pred             ccCCcEEEEe-eCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCC
Q 012996          131 SEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLK  208 (451)
Q Consensus       131 ~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~  208 (451)
                      +|+++.++++ +.++.+.+||+.+           ...+..+. +...+.+++|++++  .++++++.++ .+.+||..+
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~-----------~~~~~~~~-~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIET-----------RKVLAEIP-VGVEPEGMAVSPDG--KIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCC-----------CeEEeEee-CCCCcceEEECCCC--CEEEEEecCCCeEEEEeCCC
Confidence            9999877654 5689999999954           22233332 22345788999988  7888877765 567789988


Q ss_pred             CceeeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccC-------CcceeEEEEec-
Q 012996          209 GRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDH-------SKAVTCLAYST-  279 (451)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~-  279 (451)
                      ++..........+.+++|+|++.+|++++ .++.|++||+.+...         +..+..+       ......++|+| 
T Consensus       147 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       147 YEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             CeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------eeeeeecccccccccCCccceEECCC
Confidence            87776665556678899999999886554 689999999987632         2222111       11235688999 


Q ss_pred             CCEEEE-EcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec-cCCCCccccccCCCCCCCc
Q 012996          280 GDLLIS-GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       280 ~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-s~d~~i~iw~~~~~~~~~~  347 (451)
                      ++++++ .+.++.|.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+|+..+..+...
T Consensus       218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS  286 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            777544 4557789999999988877654 34579999999999999876 5689999999987654433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=8.5e-27  Score=206.33  Aligned_cols=121  Identities=16%  Similarity=0.194  Sum_probs=108.1

Q ss_pred             ceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEe
Q 012996          220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd  296 (451)
                      .|+.+.|+| |...|++++.||.|++|.+..+....  ..+.+-..+..|...|+++.|+|  .+.|++++.|.+|++||
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCc--ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            577889999 77899999999999999998765322  22355667889999999999999  89999999999999999


Q ss_pred             CCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          297 PITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       297 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      +.+++....+.+|.+.|.+++|||||+.+|+.+.||++++|+....
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence            9999999999999999999999999999999999999999997644

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.7e-26  Score=210.53  Aligned_cols=276  Identities=16%  Similarity=0.198  Sum_probs=224.0

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC-ceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      .|..+.+.++  |.|+|.++.+++.| |.|++|+.... ..+.... +...|.+++..  +++|++|+.++.|.+|.+.+
T Consensus        11 aht~G~t~i~--~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLIC--YDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEE--EcCCCCEEEEecCC-CceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            3556678888  99999999999998 99999998765 3322222 67788888775  55899999999999999998


Q ss_pred             CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  191 (451)
                      ++.-..+....-++++++|+.+|++++.||.|-.|++-++.+           ......+.+|.++|.++.++|.+  ++
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-----------~s~~~~lrgh~apVl~l~~~p~~--~f  152 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-----------SSQEKVLRGHDAPVLQLSYDPKG--NF  152 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-----------cchheeecccCCceeeeeEcCCC--CE
Confidence            877666666778899999999999999999999999999844           44567789999999999999998  89


Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeee---------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996          192 IVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (451)
                      |++.+.||.|++||+.++.+...+.         ....+..++|+|++..|++.+.|+.|.+|+..+....       ..
T Consensus       153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-------f~  225 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-------FK  225 (933)
T ss_pred             EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh-------ee
Confidence            9999999999999999987766554         1345678999999999999999999999999886421       11


Q ss_pred             eeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          263 GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       263 ~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      .....+...+.++.|+| |.|||+++.||.|.|||+.+...    ......|++++|.|+..-+.....-|...+|-
T Consensus       226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~  298 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVSP  298 (933)
T ss_pred             ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence            22233455699999999 99999999999999999998322    22345899999999998776665556555553

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=6.2e-27  Score=201.65  Aligned_cols=264  Identities=16%  Similarity=0.250  Sum_probs=215.5

Q ss_pred             EEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC-
Q 012996            4 LIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-   79 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-   79 (451)
                      .+.||+  .|.|+|||+....   .+..+ .+....+.|..+.  .+|+|+.|++||.- .++.|||+..+...++... 
T Consensus       433 hVyTgG--kgcVKVWdis~pg~k~PvsqL-dcl~rdnyiRSck--L~pdgrtLivGGea-stlsiWDLAapTprikaelt  506 (705)
T KOG0639|consen  433 HVYTGG--KGCVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCK--LLPDGRTLIVGGEA-STLSIWDLAAPTPRIKAELT  506 (705)
T ss_pred             eeEecC--CCeEEEeeccCCCCCCccccc-cccCcccceeeeE--ecCCCceEEecccc-ceeeeeeccCCCcchhhhcC
Confidence            356666  7899999987432   22222 2223556677777  99999999999997 9999999987776555332 


Q ss_pred             --CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           80 --AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        80 --~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                        .-.+.+++.+||.+..++++.||.|.|||+.+...++.|++|.+.+.||..++||..|.||+.|.+|+.||++++.. 
T Consensus       507 ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-  585 (705)
T KOG0639|consen  507 SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-  585 (705)
T ss_pred             CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-
Confidence              34678899999999999999999999999999999999999999999999999999999999999999999976321 


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (451)
                              ...   ......|.++-.+|.+  .+++.|-.++.+.+......+....-.|.+.|.++.|.+.|+++++.+
T Consensus       586 --------lqq---hdF~SQIfSLg~cP~~--dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  586 --------LQQ---HDFSSQIFSLGYCPTG--DWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             --------hhh---hhhhhhheecccCCCc--cceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence                    111   1235678889899988  899999999999999887666555556899999999999999999999


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      .|+.+..|.+..+..         +... .....|.++.+|. .++++||+.|..-.||.+
T Consensus       653 kDnlLnawrtPyGas---------iFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGAS---------IFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCccccc---------eeec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999887642         2222 2467899999998 999999999998888865

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=9.6e-26  Score=183.70  Aligned_cols=284  Identities=14%  Similarity=0.140  Sum_probs=209.7

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----eeecCCCCeeEEEECCCCcEEEEecc-CCCEEE
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYM  106 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  106 (451)
                      .+|...|++++  |+.+|++||+++.| +.|++|+++.-...     ......+..+.+.|+||.+-+++... ...+++
T Consensus        83 KgH~~~vt~~~--FsSdGK~lat~~~D-r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   83 KGHKKEVTDVA--FSSDGKKLATISGD-RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hccCCceeeeE--EcCCCceeEEEeCC-ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            46778899999  99999999999999 99999998753321     22224457899999999876655544 456999


Q ss_pred             EEcCC---Cccee---------eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996          107 WEVAS---GRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus       107 wd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      |.+..   |....         .-+.|.-.|..+-...++.+|++++.|..|.+|+++            .+.+..+...
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk------------Gq~L~~idtn  227 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK------------GQLLQSIDTN  227 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC------------Cceeeeeccc
Confidence            97642   22111         113466677777777789999999999999999993            4456666666


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC---CCc-----eeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KGR-----LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~-----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (451)
                      ...-+..+++|+|  +++++++..--|++|.+-   .|.     .+..+. |.+.|..++|+|+...+++.+.||.+++|
T Consensus       228 q~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  228 QSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             cccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence            6667778899999  899999999999999863   221     122333 78899999999999999999999999999


Q ss_pred             EccCCCCCCCCCCceeeee----eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEE
Q 012996          246 ALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVV  319 (451)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s  319 (451)
                      |++-.-....  .+..+.+    +..-.+....+.++| ++.|+.+ ....+.+|..++++...+++ .|.+.|++++|+
T Consensus       306 dtdVrY~~~q--Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~  382 (420)
T KOG2096|consen  306 DTDVRYEAGQ--DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYS  382 (420)
T ss_pred             eccceEecCC--CchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence            9865321110  0111111    222234445899999 7777765 45679999999998887765 688999999999


Q ss_pred             ecCceeeeccCCCCcccc
Q 012996          320 RRPLYLNLGSFSNPHTSS  337 (451)
Q Consensus       320 ~~~~~l~~~s~d~~i~iw  337 (451)
                      ++|+++++++. ..+++.
T Consensus       383 ~~g~~~atcGd-r~vrv~  399 (420)
T KOG2096|consen  383 SDGKYIATCGD-RYVRVI  399 (420)
T ss_pred             CCCcEEeeecc-eeeeee
Confidence            99999999874 444443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2e-26  Score=180.76  Aligned_cols=232  Identities=18%  Similarity=0.277  Sum_probs=185.2

Q ss_pred             EEEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEee--ccCcccCCCCCCccEEEEECCCCcee---
Q 012996            3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKPQVE---   74 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~g~i~vw~~~~~~~~---   74 (451)
                      ..|||++ .|++|+|+..+...   .+.++.+|.++   +.-++  |..  -|.+||+++.| |.|.||.-.+++..   
T Consensus        24 krlATcs-SD~tVkIf~v~~n~~s~ll~~L~Gh~GP---Vwqv~--wahPk~G~iLAScsYD-gkVIiWke~~g~w~k~~   96 (299)
T KOG1332|consen   24 KRLATCS-SDGTVKIFEVRNNGQSKLLAELTGHSGP---VWKVA--WAHPKFGTILASCSYD-GKVIIWKEENGRWTKAY   96 (299)
T ss_pred             ceeeeec-CCccEEEEEEcCCCCceeeeEecCCCCC---eeEEe--ecccccCcEeeEeecC-ceEEEEecCCCchhhhh
Confidence            5799999 99999999988654   45666666555   55555  654  79999999999 99999998887543   


Q ss_pred             eeecCCCCeeEEEECCC--CcEEEEeccCCCEEEEEcCCC---cceeeeccccCCeeEEEEccC---C-----------c
Q 012996           75 VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSED---G-----------S  135 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~  135 (451)
                      ....|...|++++|.|.  |-.|++++.||.|.|.+.++.   ........|.-.|++++|.|.   |           +
T Consensus        97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k  176 (299)
T KOG1332|consen   97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK  176 (299)
T ss_pred             hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence            23447889999999885  678999999999999998755   223445789999999999985   4           5


Q ss_pred             EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC--CeeEEEEeeCCCcEEEEEcCCCcee-
Q 012996          136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLLKGRLL-  212 (451)
Q Consensus       136 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~-  212 (451)
                      .|++|+.|..|+||+...         ........+.+|...|+.++|.|.-  ....|++++.||+|.||-.+..... 
T Consensus       177 rlvSgGcDn~VkiW~~~~---------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  177 RLVSGGCDNLVKIWKFDS---------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             eeeccCCccceeeeecCC---------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence            699999999999999966         3455566799999999999999864  2368999999999999987632111 


Q ss_pred             -eee--ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          213 -RNI--VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       213 -~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                       .++  .++..+..+.|++.|+.|++++.|+.+.+|.-+..
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence             111  15778999999999999999999999999976543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.9e-26  Score=183.91  Aligned_cols=287  Identities=12%  Similarity=0.123  Sum_probs=214.8

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  117 (451)
                      ..|+.  |++.|.+||+|+.+ |.|.+||+.+..+. ....|-.+|.+++||+||+.|++++.|..|.+||+..|.+++.
T Consensus        26 a~~~~--Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQ--FSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEE--eccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            45566  99999999999999 99999999887654 3356889999999999999999999999999999999999888


Q ss_pred             eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC--cCceeEEEEeecCCeeEEEE
Q 012996          118 WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       118 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~~l~s  194 (451)
                      +. ...+|+...|+| +.+.+++.-.+..-.+-++...         ....+..-...  ...-.+..|.+.|  +++++
T Consensus       103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---------~h~~Lp~d~d~dln~sas~~~fdr~g--~yIit  170 (405)
T KOG1273|consen  103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---------KHSVLPKDDDGDLNSSASHGVFDRRG--KYIIT  170 (405)
T ss_pred             EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---------ceeeccCCCccccccccccccccCCC--CEEEE
Confidence            86 678999999999 3344444444444555555321         11111110100  1111122455666  89999


Q ss_pred             eeCCCcEEEEEcCCCceeeeeec--ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--CCc
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSK  270 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~  270 (451)
                      |...|.+.++|..+.+++..+..  ...|..+.++..|+.|+.-+.|..|+.|++..-..........+...++.  ...
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            99999999999999999988873  36899999999999999999999999999874321111111122222221  123


Q ss_pred             ceeEEEEec-CCEEEEEcC-CCcEEEEeCCCCceEEEeecCC-CCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          271 AVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +-.+++|+. |.|+++|+. -..++||....|.+++.+.+.. ....++.|+|-...+++. ..|.+++|....
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence            446788888 888888875 3469999999999999999887 467889999998888887 789999999663

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=209.05  Aligned_cols=235  Identities=18%  Similarity=0.252  Sum_probs=197.8

Q ss_pred             Eee-ccCcccCCCCCCccEEEEECCCC---c-eeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeec
Q 012996           46 FLA-SSQLREQPSASSGSILYWSWSKP---Q-VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWH  119 (451)
Q Consensus        46 ~~~-~~~~l~~~~~d~g~i~vw~~~~~---~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  119 (451)
                      |.. +.++||+++.. |.|.+||+...   . ......|...+.+++|++ ..++|++|+.||.|++||++..+...++.
T Consensus        95 W~~~~~NlIAT~s~n-G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~  173 (839)
T KOG0269|consen   95 WGQLYSNLIATCSTN-GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR  173 (839)
T ss_pred             cccchhhhheeecCC-CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence            553 46778888887 99999999862   2 223345889999999988 56788999999999999999999999999


Q ss_pred             cccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996          120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (451)
Q Consensus       120 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d  198 (451)
                      +....|.+++|+| .+..|+++...|.+++||++.          ...+...+..|.++|.++.|+|+.  .+|+||+.|
T Consensus       174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq----------p~r~~~k~~AH~GpV~c~nwhPnr--~~lATGGRD  241 (839)
T KOG0269|consen  174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ----------PDRCEKKLTAHNGPVLCLNWHPNR--EWLATGGRD  241 (839)
T ss_pred             ccchhhhceeeccCCCceEEEecCCceEEEeeccC----------chhHHHHhhcccCceEEEeecCCC--ceeeecCCC
Confidence            9999999999999 778899999999999999975          455777889999999999999977  899999999


Q ss_pred             CcEEEEEcCCCc--eeeeeecccceeEEEECCCCCE-EEEEe--CCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996          199 RTCKVWSLLKGR--LLRNIVFPSVIDAIALDPAEHV-FYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT  273 (451)
Q Consensus       199 ~~i~iwd~~~~~--~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  273 (451)
                      +.|+|||..+++  .+.++....++.++.|-|...+ |++++  .|-.|++||++..-        -+..++..|...++
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------IP~~t~~eH~~~vt  313 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------IPYATFLEHTDSVT  313 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc--------ccceeeeccCcccc
Confidence            999999998654  4566667889999999997655 55543  46789999999864        56778899999999


Q ss_pred             EEEEec--CCEEEEEcCCCcEEEEeCCCCc
Q 012996          274 CLAYST--GDLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       274 ~~~~~~--~~~l~s~~~dg~i~iwd~~~~~  301 (451)
                      .++|..  ...|.+++.||+|..-.+++..
T Consensus       314 ~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             ceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            999987  6789999999998776665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=7.1e-25  Score=189.13  Aligned_cols=294  Identities=19%  Similarity=0.301  Sum_probs=224.4

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeec--cCcccCCC-CCCccEEEEECCCCceeee-ecCCCCeeEEEEC
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS--SQLREQPS-ASSGSILYWSWSKPQVEVK-SLPAEPIKPIAAN   89 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~-~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~   89 (451)
                      .+++||..+...+..+-   ....+|.|++  |++.  |.+++... +.+..+.|||+..+..... ...++.|....|+
T Consensus       135 hvriWdsv~L~TL~V~g---~f~~GV~~va--Fsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FH  209 (626)
T KOG2106|consen  135 HVRIWDSVTLSTLHVIG---FFDRGVTCVA--FSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFH  209 (626)
T ss_pred             eeeecccccceeeeeec---cccccceeee--ecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEec
Confidence            49999988777776664   4557899999  8863  44544432 2237899999987665433 3356788999999


Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCcceee---eccc-cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |.+..+++....|.+.+|+.+.+.+...   +..+ ...|.|++|.++|. +++|..+|.|.||+..+           .
T Consensus       210 Ptd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~-----------~  277 (626)
T KOG2106|consen  210 PTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT-----------N  277 (626)
T ss_pred             cCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC-----------c
Confidence            9766665556678999999988866543   3322 36799999999987 78999999999999843           3


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--------------------------------
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--------------------------------  213 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------  213 (451)
                      ...+....|.+.|.+++...+|   .|++|+.|+.|..||- .-+.++                                
T Consensus       278 ~~~k~~~aH~ggv~~L~~lr~G---tllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~  353 (626)
T KOG2106|consen  278 RISKQVHAHDGGVFSLCMLRDG---TLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ  353 (626)
T ss_pred             eEEeEeeecCCceEEEEEecCc---cEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence            3344444899999999999887   6777999999999983 111111                                


Q ss_pred             ----------eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCE
Q 012996          214 ----------NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDL  282 (451)
Q Consensus       214 ----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  282 (451)
                                .+.|......++.+|+...+++++.|+.+++|+  ..         ++.-+ ..-..++.|+.|+| | .
T Consensus       354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~---------k~~wt-~~~~d~~~~~~fhpsg-~  420 (626)
T KOG2106|consen  354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH---------KLEWT-KIIEDPAECADFHPSG-V  420 (626)
T ss_pred             eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC---------ceeEE-EEecCceeEeeccCcc-e
Confidence                      111334567788999999999999999999999  22         11111 12357889999999 7 9


Q ss_pred             EEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       283 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      ++.|...|...+.|.++...+..-.. ..+++.+.|+|+|.+||.|+.|+.|.+|.+...
T Consensus       421 va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  421 VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            99999999999999999766655555 889999999999999999999999999998744

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.9e-27  Score=211.36  Aligned_cols=245  Identities=22%  Similarity=0.445  Sum_probs=212.5

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANS   90 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~   90 (451)
                      +-.+++||....         ..|...+.++.  .-..++.+++||.+ ..+-+|.......... ..|..+|.++.|++
T Consensus        13 ~t~Lr~~~~~~~---------~~hsaav~~lk--~~~s~r~~~~Gg~~-~k~~L~~i~kp~~i~S~~~hespIeSl~f~~   80 (825)
T KOG0267|consen   13 ATKLRVWDTREF---------VAHSAAVGCLK--IRKSSRSLVTGGED-EKVNLWAIGKPNAITSLTGHESPIESLTFDT   80 (825)
T ss_pred             eeccccccchhh---------hhhhhhhceee--eeccceeeccCCCc-eeeccccccCCchhheeeccCCcceeeecCc
Confidence            556778875421         12444555555  55677888888888 8888999887665544 77999999999999


Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                      +..+|++|+.+|+|++||+..++.++++.+|...+..+.|+|-+.++++|+.|+.+++||.+           ...+.+.
T Consensus        81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-----------k~Gc~~~  149 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-----------KKGCSHT  149 (825)
T ss_pred             chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh-----------ccCceee
Confidence            99999999999999999999999999999999999999999999999999999999999994           3557888


Q ss_pred             ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      +.+|...+..+.|+|+|  .++++++.|.++++||...|+....|. |...+.++.|+|..-.++.|+.|+.+++||+.+
T Consensus       150 ~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  150 YKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             ecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence            89999999999999999  899999999999999999999999998 899999999999999999999999999999997


Q ss_pred             CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      .         ..+.........|.+.+|+| +..+++|....
T Consensus       228 f---------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  228 F---------EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             e---------EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            4         55666666678999999999 88888876554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5e-25  Score=196.62  Aligned_cols=280  Identities=18%  Similarity=0.224  Sum_probs=230.8

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee---cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      -.+..|.+++  |+...+.||++-.+ |.|.+|++...-.....   .....|.+++|++. ..|++.+.+|.|.-||+.
T Consensus        23 ~~Ps~I~slA--~s~kS~~lAvsRt~-g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   23 YKPSEIVSLA--YSHKSNQLAVSRTD-GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eeccceEEEE--EeccCCceeeeccC-CcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecc
Confidence            4568899999  99999999988888 99999999876554333   34678999999954 457777889999999999


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      +++.+..+....+.|++++.+|.+..++.|+.||.+..++...         .....-..+...++.|.++.|.+++  .
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p---------~~I~~~r~l~rq~sRvLslsw~~~~--~  167 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP---------DKITYKRSLMRQKSRVLSLSWNPTG--T  167 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC---------ceEEEEeecccccceEEEEEecCCc--c
Confidence            9999999999999999999999999999999999777777744         2333445556667999999999998  7


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeee---------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCcee
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI  261 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  261 (451)
                      .+++|+.||.|++||..++..+....         .+.-|.++.+- ....+++|..-|.|.+||...+         ..
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~g---------TL  237 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFG---------TL  237 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCc---------ch
Confidence            89999999999999999988776222         12346677766 4567899999999999999887         55


Q ss_pred             eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCce----EEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996          262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       262 ~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                      +..+..|...|.+++..+ ++++++++.|+.|.-|...+...    ......|...|.+++..++  .|++|+.|.++.+
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            777888999999999999 89999999999999998766533    2234578889999999987  8999999998877


Q ss_pred             cccC
Q 012996          337 SRRH  340 (451)
Q Consensus       337 w~~~  340 (451)
                      -...
T Consensus       316 ~~s~  319 (691)
T KOG2048|consen  316 CSSR  319 (691)
T ss_pred             cccc
Confidence            6544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1e-25  Score=212.69  Aligned_cols=247  Identities=21%  Similarity=0.288  Sum_probs=204.5

Q ss_pred             CCCCeeEEEECCCCcE----EEEeccCCCEEEEEcCCC------cceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEE
Q 012996           79 PAEPIKPIAANSHGTY----IAGGGQSGDIYMWEVASG------RLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVR  147 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~  147 (451)
                      .....+.++|.+.|..    ||.|..||.|.+||...-      ..+.+...|.+.|..+.|++. +++|++|+.||.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            3568899999987765    888999999999998652      346677889999999999994 55999999999999


Q ss_pred             EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---cceeEE
Q 012996          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAI  224 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~i~~~  224 (451)
                      |||+.+....         ....-......|.+++|+..-. .+|++++.+|++.|||++..+.+-.+...   ..+..+
T Consensus       143 iWDlnn~~tP---------~~~~~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l  212 (1049)
T KOG0307|consen  143 IWDLNKPETP---------FTPGSQAPPSEIKCLSWNRKVS-HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL  212 (1049)
T ss_pred             EeccCCcCCC---------CCCCCCCCcccceEeccchhhh-HHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence            9999662211         1111223567899999987543 78999999999999999999888777633   348899


Q ss_pred             EECCCC-CEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996          225 ALDPAE-HVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       225 ~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~  298 (451)
                      +|+|+. ..+++++.|.   .|.+||++...        .++..+.+|...|.+|.|++  ..+|++++.|+.|.+|+.+
T Consensus       213 ~WhP~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  213 AWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             eeCCCCceeeeeecCCCCCceeEeecccccC--------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence            999965 4566666554   69999999875        66778899999999999999  4899999999999999999


Q ss_pred             CCceEEEeecCCCCeeEEEEEecCc-eeeeccCCCCccccccCCCC
Q 012996          299 THNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       299 ~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +++.+..+......+..+.|.|... .++.++.||.|-|+.+.+..
T Consensus       285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999998888999999999665 88999999999999988765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=5.8e-26  Score=183.04  Aligned_cols=216  Identities=22%  Similarity=0.301  Sum_probs=177.5

Q ss_pred             eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhc-cccc---ceecccCCcCceeEEEEeecCCeeEE
Q 012996          118 WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQR-ASHL---YLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       118 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~---~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      ...|.+.|+++...+ .|+++++|+.||.|.+||+........... ....   ....-.+|.-.|.++.|-|-.. ..+
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-cee
Confidence            356889999999988 789999999999999999976432111110 0111   1223457889999999998765 588


Q ss_pred             EEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCC---CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA---EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      .+++.|.++++||..+.+....|..++.|++-+++|-   .-++++|..+-.|++.|+..+         ....++.+|.
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr  188 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHR  188 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeecccc
Confidence            8999999999999999999999999999999999993   457888889999999999998         4567899999


Q ss_pred             cceeEEEEec--CCEEEEEcCCCcEEEEeCCCC-ceEEEee--------------cCCCCeeEEEEEecCceeeeccCCC
Q 012996          270 KAVTCLAYST--GDLLISGSEDGMVRVWDPITH-NIVRMFR--------------LAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       270 ~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      ..|.++.|+|  .-.|++|+.||.|++||++.. .+...+.              .|.+.|..++|+.++.++++++.|.
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            9999999999  667899999999999999754 3444333              5667899999999999999999999


Q ss_pred             CccccccCCCC
Q 012996          333 PHTSSRRHGSQ  343 (451)
Q Consensus       333 ~i~iw~~~~~~  343 (451)
                      .+++|+...+.
T Consensus       269 r~r~wn~~~G~  279 (397)
T KOG4283|consen  269 RIRVWNMESGR  279 (397)
T ss_pred             ceEEeecccCc
Confidence            99999976543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.7e-25  Score=204.01  Aligned_cols=254  Identities=17%  Similarity=0.218  Sum_probs=207.0

Q ss_pred             eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .+..|....+.|+|.|+|.+|++++.||.|++|+..+. +...++..+...|.+++..  +.+|++|+.+++|.+|.+..
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            44568888999999999999999999999999998766 4445555578888888776  55899999999999999844


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCE
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV  232 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~  232 (451)
                                 ...-..+...+.++++++++.+|  .+++.|+.|-.|++.+.........+. |..+|.++.|+|.+.+
T Consensus        86 -----------~~~~~iL~Rftlp~r~~~v~g~g--~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f  152 (933)
T KOG1274|consen   86 -----------GEEDTILARFTLPIRDLAVSGSG--KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF  152 (933)
T ss_pred             -----------CCccceeeeeeccceEEEEecCC--cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence                       22222344456789999999888  899999999999999999887777776 9999999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec--C
Q 012996          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--A  309 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~  309 (451)
                      ||+.+-||.|++||+.++..........+...+. ....+..++|+| +..|+..+.|+.|++|+..++.....++.  +
T Consensus       153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~  231 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS  231 (933)
T ss_pred             EEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence            9999999999999999875432211111111111 145677899999 88899999999999999999998887763  3


Q ss_pred             CCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      ...++.+.|+|.|+|||+++.||.|.|||+++...
T Consensus       232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~  266 (933)
T KOG1274|consen  232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER  266 (933)
T ss_pred             ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence            44599999999999999999999999999996433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=191.17  Aligned_cols=277  Identities=18%  Similarity=0.219  Sum_probs=208.3

Q ss_pred             EeeccCcccCCCCCC--ccEEEEECCCCceeeeecC----CCCeeEEEECC-------CCcEEEEeccCCCEEEEEcCCC
Q 012996           46 FLASSQLREQPSASS--GSILYWSWSKPQVEVKSLP----AEPIKPIAANS-------HGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      .-|+.++++++-..+  ..+.+|=.+.........|    .....|+.|..       -|+|+|.|+.|..|.|||+.--
T Consensus       133 V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~  212 (463)
T KOG0270|consen  133 VKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV  212 (463)
T ss_pred             eccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccc
Confidence            446566666654432  3455554443332222222    45557888743       3689999999999999998421


Q ss_pred             cc---ee------------------eeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996          113 RL---LK------------------KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus       113 ~~---~~------------------~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                      ..   ..                  ...+|...|..+.|.. ..+.|++||.|.+|++||+.+           ..+..+
T Consensus       213 d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-----------g~p~~s  281 (463)
T KOG0270|consen  213 DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-----------GKPKSS  281 (463)
T ss_pred             cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-----------CCccee
Confidence            10   00                  1236888999999987 456799999999999999954           556777


Q ss_pred             ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-CceeeeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 012996          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  248 (451)
                      +..|...|.++.|++... .+|++|+.|++|.+.|.+. ...-..+...+.|..++|.| ....+++++.||.++-+|++
T Consensus       282 ~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  282 ITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             hhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence            788999999999998765 8999999999999999994 34445566889999999999 45678888999999999999


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce--EEEeecCCCCeeEEEEEecCc-
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPL-  323 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~-  323 (451)
                      ...        +++.+++.|..+|.++++++  ..++++++.|+.|++|++....+  +..-...-+...|.++.|+-. 
T Consensus       361 ~~~--------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  361 NPG--------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF  432 (463)
T ss_pred             CCC--------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce
Confidence            975        77889999999999999999  88999999999999999864333  322222234567777777654 


Q ss_pred             eeeeccCCCCccccccCCC
Q 012996          324 YLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       324 ~l~~~s~d~~i~iw~~~~~  342 (451)
                      .+|.|+..+.+++|++...
T Consensus       433 ~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  433 TLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             EEEecCccceEEEeecccC
Confidence            5577888888999998754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.3e-25  Score=186.81  Aligned_cols=241  Identities=19%  Similarity=0.300  Sum_probs=190.8

Q ss_pred             CCCCeeEEEECCCC--cEEEEeccCCCEEEEEcCC----------------CcceeeeccccCCeeEEEEcc-CCcEEEE
Q 012996           79 PAEPIKPIAANSHG--TYIAGGGQSGDIYMWEVAS----------------GRLLKKWHAHYRAVTCLVFSE-DGSFLIS  139 (451)
Q Consensus        79 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~s  139 (451)
                      |.+.++.+.-++-+  .+.++-+..|.|.||++..                .+++.++.+|.+.=..++||| ....|++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            55667777776644  5566668899999999842                256778889999999999999 2234888


Q ss_pred             eeCCCcEEEeeCcchhhhhhhhccccc-ceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---ceeeee
Q 012996          140 GSEDGCVRIWSLLTVFEECESQRASHL-YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNI  215 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~  215 (451)
                      |..-+.|++|...++         ... -...+.+|+..|..++|+|... ..|++|+.||+|+|||++.+   ..+..-
T Consensus       230 GDc~~~I~lw~~~~g---------~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTG---------SWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             CccccceEeeeeccC---------ceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEee
Confidence            888889999998662         111 2344677999999999999876 79999999999999999998   455555


Q ss_pred             ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEE
Q 012996          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVR  293 (451)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~  293 (451)
                      .|++.|+.+.|+....+|++|+.||.++|||++..+..      .++..+..|..+|+++.|+|  ...|++++.|.+|.
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence            59999999999998889999999999999999987643      67889999999999999999  78999999999999


Q ss_pred             EEeCCCCc----------------eEEEeecCC--CCeeEEEEEec-CceeeeccCCCCcc
Q 012996          294 VWDPITHN----------------IVRMFRLAK--GPVNNILVVRR-PLYLNLGSFSNPHT  335 (451)
Q Consensus       294 iwd~~~~~----------------~~~~~~~~~--~~v~~l~~s~~-~~~l~~~s~d~~i~  335 (451)
                      +||+..-.                +-+.+..|.  ..+..+.|++. ..+|++.+.||.-.
T Consensus       374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV  434 (440)
T KOG0302|consen  374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV  434 (440)
T ss_pred             EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence            99975311                111223443  36888999984 35778888887543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.5e-24  Score=192.21  Aligned_cols=278  Identities=19%  Similarity=0.241  Sum_probs=219.3

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~   81 (451)
                      ..||.+. .||.|.+|++..+=.... ..+.+..+.|..++  |++ +..|++.+.+ |.|.-||+.+.+...... ..+
T Consensus        38 ~~lAvsR-t~g~IEiwN~~~~w~~~~-vi~g~~drsIE~L~--W~e-~~RLFS~g~s-g~i~EwDl~~lk~~~~~d~~gg  111 (691)
T KOG2048|consen   38 NQLAVSR-TDGNIEIWNLSNNWFLEP-VIHGPEDRSIESLA--WAE-GGRLFSSGLS-GSITEWDLHTLKQKYNIDSNGG  111 (691)
T ss_pred             Cceeeec-cCCcEEEEccCCCceeeE-EEecCCCCceeeEE--Ecc-CCeEEeecCC-ceEEEEecccCceeEEecCCCc
Confidence            3588999 999999999986543322 23445668888898  984 5556677777 999999999888776644 578


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      .|.+++.+|.+..++.|+.||.++.++...+....  .+....+.|.++.|+|++..+++|+.||.|++||+..+...-.
T Consensus       112 ~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~  191 (691)
T KOG2048|consen  112 AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI  191 (691)
T ss_pred             ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE
Confidence            99999999999999999999988888877775543  3455568999999999999999999999999999966321110


Q ss_pred             hhcccccceecccC-CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996          160 SQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (451)
                         ... .+..+.. ...-|+++.+-.+   ..|++|...|+|.+||...+..++.+. |...|.+++..++++++++++
T Consensus       192 ---~~~-~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  192 ---ITM-QLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             ---eee-cccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence               000 0111222 4456788888766   589999999999999999999999888 899999999999999999999


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~  299 (451)
                      .|+.|..|...+....     +........|...|.+++..+ ..+++|+.|..+.+-....
T Consensus       265 vd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~-~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  265 VDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIE-NALISGGRDFTLAICSSRE  320 (691)
T ss_pred             CCCceEEEEecCCccc-----eeeeccccCCcccceeeeeec-ceEEecceeeEEEEccccc
Confidence            9999999988776431     334455667999999999984 6999999999998876554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3e-24  Score=174.19  Aligned_cols=276  Identities=16%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-----ecCCCCeeEEEECC--CCcEEEEeccCCCEEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAANS--HGTYIAGGGQSGDIYM  106 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i  106 (451)
                      +|..-|.++.  |.+.|+.+|+++.| ++|+|||.+...-...     ..|.+.|..+.|.+  -|+.+|+++.|+++.|
T Consensus        11 ~h~DlihdVs--~D~~GRRmAtCSsD-q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVS--FDFYGRRMATCSSD-QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             CCcceeeeee--ecccCceeeeccCC-CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            4667788888  99999999999999 9999999764442221     34889999999954  5899999999999999


Q ss_pred             EEcCCC---------cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee------
Q 012996          107 WEVASG---------RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH------  169 (451)
Q Consensus       107 wd~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------  169 (451)
                      |.-...         ....++....+.|++++|.|  -|-.|++++.||.++||+.-.....     ......+      
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL-----s~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL-----SQWTLQHEIQNVI  162 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc-----ccchhhhhhhhcc
Confidence            985211         22345666788999999999  5778999999999999998542211     1122222      


Q ss_pred             -cccCCcCceeEEEEeecCC-eeEEEEeeCC-----CcEEEEEcCCCc-e---eeeee-cccceeEEEECCC----CCEE
Q 012996          170 -SFTGHTLRITDIVIGYGGV-SATIVSASED-----RTCKVWSLLKGR-L---LRNIV-FPSVIDAIALDPA----EHVF  233 (451)
Q Consensus       170 -~~~~~~~~i~~i~~~~~~~-~~~l~s~~~d-----~~i~iwd~~~~~-~---~~~~~-~~~~i~~~~~~~~----~~~l  233 (451)
                       ....+..+..|+.|++..- ..+|+.|+.+     +.++||....+. .   +.++. +..+|+.++|.|+    -..|
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence             2235667778888886432 2567777665     479999876543 2   22333 7899999999995    3579


Q ss_pred             EEEeCCCcEEEEEccCCC-----------CCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC--
Q 012996          234 YAGSRDGSIYIAALNAES-----------PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--  299 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~--  299 (451)
                      ++++.|| |+||.+....           ........+.+..+.+|.+.|..+.|+- |..|++.|.||.|++|...-  
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            9999999 9999998421           1112234466778899999999999999 99999999999999998542  


Q ss_pred             -CceEEEeecCCCCeeEEEEE
Q 012996          300 -HNIVRMFRLAKGPVNNILVV  319 (451)
Q Consensus       300 -~~~~~~~~~~~~~v~~l~~s  319 (451)
                       .+++..++. .+.++...|+
T Consensus       322 ~~kC~sv~~~-e~~~~~~~~~  341 (361)
T KOG2445|consen  322 LWKCTSVLKA-EGSVTKPDFS  341 (361)
T ss_pred             hheeeeEEec-cCCCCCcccc
Confidence             345555544 2334444443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=2.6e-25  Score=195.68  Aligned_cols=279  Identities=17%  Similarity=0.187  Sum_probs=222.1

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCc--EEEEeccCCCEEEEEcCC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~  111 (451)
                      +|.+.|.++.  ..|.|.+|++|+.| |+|+||.+.++.+.......+.|.||+|+|.+.  .||++-.. .+.|.+..-
T Consensus       398 GHtg~Vr~iS--vdp~G~wlasGsdD-GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~  473 (733)
T KOG0650|consen  398 GHTGLVRSIS--VDPSGEWLASGSDD-GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIF  473 (733)
T ss_pred             ccCCeEEEEE--ecCCcceeeecCCC-CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccc
Confidence            4556777887  88999999999998 999999999999998888889999999999765  34443332 344443321


Q ss_pred             C-------------------------------------cceeeeccccCCeeEEEEccCCcEEEEeeCC---CcEEEeeC
Q 012996          112 G-------------------------------------RLLKKWHAHYRAVTCLVFSEDGSFLISGSED---GCVRIWSL  151 (451)
Q Consensus       112 ~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~  151 (451)
                      |                                     .-++..-.|...|..+.|+..|.||++...+   ..|.|+++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            1                                     0012233578899999999999999987664   46899998


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE  230 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~  230 (451)
                      ..           ......|....+.|.++.|+|..  .+|++++. ..|+|||+..+..+..+. ....|..++++|.|
T Consensus       554 SK-----------~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  554 SK-----------RKSQSPFRKSKGLVQRVKFHPSK--PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cc-----------ccccCchhhcCCceeEEEecCCC--ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            54           22234455567788999999987  56666654 579999998877776665 45678999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC------C---C
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI------T---H  300 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~------~---~  300 (451)
                      ..|++|+.|+.+..||+.-..        ++..++..|...+++++|++ -.+|++|+.||++.|+.-.      .   -
T Consensus       620 Dnli~gs~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli  691 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI  691 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence            999999999999999998865        67788999999999999999 8999999999999998532      1   1


Q ss_pred             ceEEEeecCCCC----eeEEEEEecCceeeeccCCCCccccc
Q 012996          301 NIVRMFRLAKGP----VNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       301 ~~~~~~~~~~~~----v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      -+++.+++|...    |.++.|+|....|++++.||+|++|.
T Consensus       692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             EeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            356778888654    88999999999999999999999984

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=3.9e-25  Score=195.92  Aligned_cols=285  Identities=16%  Similarity=0.166  Sum_probs=208.2

Q ss_pred             ccCcccCCCCCCccEEEEECCCCcee-------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee--ec
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WH  119 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~  119 (451)
                      ....++..+.++|.|.++|.......       .-..|...|..+.|.|....|++++.|.++++||++.+++...  +.
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~  141 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL  141 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence            33444444444599999998754433       2234889999999999778899999999999999999998876  88


Q ss_pred             cccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh----------------hhcccccceecccCCcCceeE--
Q 012996          120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE----------------SQRASHLYLHSFTGHTLRITD--  180 (451)
Q Consensus       120 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~--  180 (451)
                      +|.+.|.+++|.| +...|++|+.||.|.|||++-......                ........+.....+...|.+  
T Consensus       142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv  221 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV  221 (720)
T ss_pred             ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence            9999999999999 566789999999999999975331100                000011112333445555555  


Q ss_pred             -EEEeecCCeeEEEEeeC-CCcEEEEEcCCCceeeeee---------c---ccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996          181 -IVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIV---------F---PSVIDAIALDPAEHVFYAGSRDGSIYIAA  246 (451)
Q Consensus       181 -i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~---------~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  246 (451)
                       +.+..+.  ..|++++. |+.|++||+++........         +   ...+.++..+..|.+|++.+.|+.|++|+
T Consensus       222 Tvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn  299 (720)
T KOG0321|consen  222 TVVLFKDE--STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN  299 (720)
T ss_pred             EEEEEecc--ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence             4444555  68888887 9999999998764332221         1   24578888999999999999999999999


Q ss_pred             ccCCCCCCCCCCceeeeeeccCCcce--eEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecC
Q 012996          247 LNAESPSTSSYGMHIIGSLSDHSKAV--TCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      +.....       .++..+.++...-  ..-..+| +.++++|+.|....+|.+.+.+ ....+.+|.-.|++++|.|..
T Consensus       300 m~s~s~-------sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  300 MRSLSI-------SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             ccccCc-------CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            988653       3344444443211  1123467 9999999999999999998754 455677999999999999833


Q ss_pred             -ceeeeccCCCCccccccCCC
Q 012996          323 -LYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       323 -~~l~~~s~d~~i~iw~~~~~  342 (451)
                       .-+++++.|..+++|++..+
T Consensus       373 ~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  373 TTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CCCceeeccCcceEEEeccCc
Confidence             45677799999999998644

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=2.3e-24  Score=192.77  Aligned_cols=328  Identities=15%  Similarity=0.217  Sum_probs=245.6

Q ss_pred             EEeecCCCCCCeEEEECcc--CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----eeeee
Q 012996            4 LIASSSVADTGIGCWDLES--GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~~~   77 (451)
                      .|.+++ .|.++.+|...+  |--+...+...-.....-+.+..|+|++..+++-+.. |..++|......    .....
T Consensus       281 ~LLSAS-aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~-Gg~hlWkt~d~~~w~~~~~iS  358 (764)
T KOG1063|consen  281 DLLSAS-ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT-GGFHLWKTKDKTFWTQEPVIS  358 (764)
T ss_pred             hheecc-cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc-CcEEEEeccCccceeeccccc
Confidence            577888 999999998654  3344333332222122223333499999999888888 999999943322    23445


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .|.+.|+.++|+|.|.+|++.+.|.+-+++-.-..    ..+..-+-|.-.++|++|-+....|++|.....+++|+...
T Consensus       359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk  438 (764)
T KOG1063|consen  359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK  438 (764)
T ss_pred             cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence            68899999999999999999999999999864311    22334467888999999998667799999999999998743


Q ss_pred             hhhhh-------------h-----------------h--h---------------------------------cccccce
Q 012996          154 VFEEC-------------E-----------------S--Q---------------------------------RASHLYL  168 (451)
Q Consensus       154 ~~~~~-------------~-----------------~--~---------------------------------~~~~~~~  168 (451)
                      .....             .                 .  .                                 ..-.+.+
T Consensus       439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv  518 (764)
T KOG1063|consen  439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV  518 (764)
T ss_pred             HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence            21000             0                 0  0                                 0011223


Q ss_pred             ecccCCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996          169 HSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI  242 (451)
Q Consensus       169 ~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (451)
                      +.+.+|...|++++.+|++  +++++++...     .|++|+..+-.....+. |.-.|+.++|+|++++|++.+.|.++
T Consensus       519 ~KLYGHGyEv~~l~~s~~g--nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~  596 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTG--NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV  596 (764)
T ss_pred             HHhccCceeEEEEEecCCC--CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence            5678999999999999998  8999988754     58999998887777666 88899999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC--ceEEE--eecCCCCeeEEE
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRM--FRLAKGPVNNIL  317 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~l~  317 (451)
                      .+|.........     ......+.|+.-|.+..|+| +.+|+|+|.|.+|++|.....  +.+..  ...+..+|+.++
T Consensus       597 sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~  671 (764)
T KOG1063|consen  597 SLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA  671 (764)
T ss_pred             Eeeeeecccchh-----hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence            999985543111     11233778999999999999 889999999999999998877  44443  224678999999


Q ss_pred             EEe-c----CceeeeccCCCCccccccC
Q 012996          318 VVR-R----PLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       318 ~s~-~----~~~l~~~s~d~~i~iw~~~  340 (451)
                      |.| +    +..++.|-..|.|.+|+..
T Consensus       672 ~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  672 YLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             eeccccccccceEEEEecccEEEEEecc
Confidence            987 2    2267888899999999966

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1.9e-24  Score=176.56  Aligned_cols=273  Identities=18%  Similarity=0.238  Sum_probs=213.1

Q ss_pred             eEeeccCcccCCCCCCccEEEEECCCCc--------------eeeeecCCCCeeEEEEC-------CCCcEEEEeccCCC
Q 012996           45 RFLASSQLREQPSASSGSILYWSWSKPQ--------------VEVKSLPAEPIKPIAAN-------SHGTYIAGGGQSGD  103 (451)
Q Consensus        45 ~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------------~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~  103 (451)
                      +|+|||..+++-+.| ..+++|++....              ...+....+.|...+|-       |+.+++|+.+.+.-
T Consensus        56 kWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   56 KWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             eeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            499999999999998 999999974211              12333346677777773       67889999999999


Q ss_pred             EEEEEcCCCcceeeecc--ccC---CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          104 IYMWEVASGRLLKKWHA--HYR---AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      |.+||..+|++...+.+  |..   ...+++|+|||.+|++|. ...|+++|+......+.   ......+.-.+..+-|
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~---vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP---VYTTVTKGKFGQKGII  210 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc---chhhhhccccccccee
Confidence            99999999998877753  333   346899999999998875 46999999943211110   0001111123447788


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCC
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSS  256 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  256 (451)
                      .+++|+|... ..++.++...++-||.-..+.++..+. |.+.|+.++|.++|+.|++|.. +..|..||++...     
T Consensus       211 sc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-----  284 (406)
T KOG2919|consen  211 SCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-----  284 (406)
T ss_pred             eeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-----
Confidence            9999999764 689999999999999888888887776 8899999999999999999975 6689999999865     


Q ss_pred             CCceeeeeeccCCc-ceeEEEE--ec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996          257 YGMHIIGSLSDHSK-AVTCLAY--ST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (451)
Q Consensus       257 ~~~~~~~~~~~~~~-~v~~~~~--~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d  331 (451)
                         .++..+..|.. .-..|.|  .| +++|++|+.||.|++||+.+ +..+..+..|...++.++++|--..+|+++..
T Consensus       285 ---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  285 ---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence               55667777766 3334444  46 99999999999999999998 77788888999999999999998888888643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=6.3e-25  Score=189.11  Aligned_cols=255  Identities=17%  Similarity=0.272  Sum_probs=203.7

Q ss_pred             EEEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeec
Q 012996            3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSL   78 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~   78 (451)
                      +.+|+.+ .|..|++|.- .|+   ....-+...   ..-.|++  ......+++++|.. +.|+|||+....+. ....
T Consensus        48 lvvas~~-gdk~~~~~~K-~g~~~~Vp~~~k~~g---d~~~Cv~--~~s~S~y~~sgG~~-~~Vkiwdl~~kl~hr~lkd  119 (673)
T KOG4378|consen   48 LVVASMA-GDKVMRIKEK-DGKTPEVPRVRKLTG---DNAFCVA--CASQSLYEISGGQS-GCVKIWDLRAKLIHRFLKD  119 (673)
T ss_pred             EEEeecC-CceeEEEecc-cCCCCccceeecccc---chHHHHh--hhhcceeeeccCcC-ceeeehhhHHHHHhhhccC
Confidence            4556666 8999999973 333   222212111   1333444  33445889999998 99999999854443 2345


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcchhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFE  156 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~  156 (451)
                      |...|+++.++-...|||+++..|.|.|..+.++..-..|... ...|.-+.|+|..++ |.+++.+|.|.+||+..   
T Consensus       120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g---  196 (673)
T KOG4378|consen  120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---  196 (673)
T ss_pred             CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---
Confidence            8899999999999999999999999999999998877777644 455668999996554 66889999999999943   


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (451)
                             ..+...-...|..+..+|+|+|... .+|++.+.|..|.+||++..+....+....+...++|.++|.+|++|
T Consensus       197 -------~sp~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  197 -------MSPIFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG  268 (673)
T ss_pred             -------CCcccchhhhccCCcCcceecCCcc-ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEee
Confidence                   2334445678999999999999875 78999999999999999999988888889999999999999999999


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEE
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI  284 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~  284 (451)
                      +..|.|+.||++..+        .++.....|...|++++|-|...++
T Consensus       269 ~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~s~tvl  308 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQPSPTVL  308 (673)
T ss_pred             cCCceEEEEecccCC--------CCceEeeecccceeEEEeeecceee
Confidence            999999999999876        7788999999999999998733433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.3e-24  Score=175.76  Aligned_cols=272  Identities=17%  Similarity=0.232  Sum_probs=201.5

Q ss_pred             EEEeecCCCCCCeEEEECccCcee--eeee--cCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---ee-
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQ--LRYK--SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VE-   74 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~--~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~-   74 (451)
                      -.|||++ .|++|+||++..-...  +.++  ....|+..|   .  |.||.+.+++....+.++++|...+..   .. 
T Consensus        99 K~lat~~-~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V---~--FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~  172 (420)
T KOG2096|consen   99 KKLATIS-GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV---V--FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH  172 (420)
T ss_pred             ceeEEEe-CCceEEEEecchhhhhhhhHhhccccCCCceEE---E--ECCCcceEEEEEccCCEEEEEEeeecccCCCCc
Confidence            4689999 9999999998753221  1111  111244444   4  999999988887776899999875322   11 


Q ss_pred             ---------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc
Q 012996           75 ---------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC  145 (451)
Q Consensus        75 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  145 (451)
                               +...|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++..-.
T Consensus       173 ~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD  251 (420)
T KOG2096|consen  173 HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD  251 (420)
T ss_pred             ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC
Confidence                     122245567777788889999999999999999998 9999988877777788899999999999999999


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-------Cceeeeee--
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GRLLRNIV--  216 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~--  216 (451)
                      |++|.+--....   .......+..+.+|...|..++|+++.  ..+++.+.||++++||..-       .+.+....  
T Consensus       252 VkVwE~~f~kdG---~fqev~rvf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p  326 (420)
T KOG2096|consen  252 VKVWEPIFTKDG---TFQEVKRVFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP  326 (420)
T ss_pred             ceEEEEEeccCc---chhhhhhhheeccchhheeeeeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence            999987321110   012233466789999999999999998  8999999999999999752       12222221  


Q ss_pred             ---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcE
Q 012996          217 ---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV  292 (451)
Q Consensus       217 ---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i  292 (451)
                         ..+....+.++|+|+.|+++. ...+.+|..+.++.        .-..-..|...|.+++|++ |+++++++ |..+
T Consensus       327 l~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~--------~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v  396 (420)
T KOG2096|consen  327 LHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD--------YPELEDIHSTTISSISYSSDGKYIATCG-DRYV  396 (420)
T ss_pred             hhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc--------chhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence               123455899999999998765 45788998887642        1222345899999999999 99999987 6677


Q ss_pred             EEEe
Q 012996          293 RVWD  296 (451)
Q Consensus       293 ~iwd  296 (451)
                      +++.
T Consensus       397 rv~~  400 (420)
T KOG2096|consen  397 RVIR  400 (420)
T ss_pred             eeec
Confidence            7775

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=3.5e-24  Score=182.74  Aligned_cols=289  Identities=14%  Similarity=0.166  Sum_probs=214.8

Q ss_pred             CCCceEEecceEeeccC-cccCCCCCCccEEEEECCCC-----ceeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEE
Q 012996           35 PPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKP-----QVEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMW  107 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw  107 (451)
                      +.+.|++++  |+|... .++++|...|.|-+||+.+.     .......|..+|.+|.|+| +...+++.+.||+|++-
T Consensus       185 ~~~Rit~l~--fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  185 TDRRITSLA--FHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             cccceEEEE--ecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            457899999  999876 44444444499999999522     2334456889999999999 45678888999999999


Q ss_pred             EcCCCcc--eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          108 EVASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       108 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      |++.+..  +..+......+.++.|+.+...++.+..=|...+||+++.          ......+.-|...|.+++++|
T Consensus       263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~----------~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD----------GSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC----------CccchhhhhhhcccceeecCC
Confidence            9987743  3344435566778889888888888888889999999762          223445566888999999999


Q ss_pred             cCCeeEEEEeeCCCcEEEEEcCCCc-----eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCce
Q 012996          186 GGVSATIVSASEDRTCKVWSLLKGR-----LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH  260 (451)
Q Consensus       186 ~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  260 (451)
                      -.. .+|+|++.|++++|||++.-.     .+..+.|...|.+..|+|.+..|++.+.|..|++||..--...     ..
T Consensus       333 ~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-----~~  406 (498)
T KOG4328|consen  333 VCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-----DE  406 (498)
T ss_pred             CCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-----CC
Confidence            765 799999999999999998632     2556668999999999998888999999999999998411000     01


Q ss_pred             eeeeec---cCC--cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeE-EEEEecCceeee-ccCC
Q 012996          261 IIGSLS---DHS--KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNN-ILVVRRPLYLNL-GSFS  331 (451)
Q Consensus       261 ~~~~~~---~~~--~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-l~~s~~~~~l~~-~s~d  331 (451)
                      +..++.   .+.  -......|.| ..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+..+++ ++..
T Consensus       407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence            111221   111  1234568999 89999999999999999998888887654433 4555 479998874555 5566


Q ss_pred             CCccccccCC
Q 012996          332 NPHTSSRRHG  341 (451)
Q Consensus       332 ~~i~iw~~~~  341 (451)
                      |.|.+|.-++
T Consensus       487 Gki~vft~k~  496 (498)
T KOG4328|consen  487 GKIYVFTNKK  496 (498)
T ss_pred             ceEEEEecCC
Confidence            7888887553

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.2e-24  Score=176.57  Aligned_cols=280  Identities=20%  Similarity=0.274  Sum_probs=203.0

Q ss_pred             CeEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee----
Q 012996            1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK----   76 (451)
Q Consensus         1 ~e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~----   76 (451)
                      +|..+|++- ..|+|++||..+|+.+..++++..+.+.+..+...   ....+.+++.| |+|++||++......+    
T Consensus        39 ~e~~vav~l-Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d---s~h~v~s~ssD-G~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   39 FETAVAVSL-SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD---SPHGVISCSSD-GTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             cceeEEEEe-cCCeEEEEeccchhhhheecCCCCcccceEEecCC---CCCeeEEeccC-CeEEEEEeecchhhhheecc
Confidence            467888988 89999999999999999999888887777754411   44556677777 9999999986543322    


Q ss_pred             ecCCCCeeEEEECCCCcEEEEecc----CCCEEEEEcCCCcc-eeee-ccccCCeeEEEEcc-CCcEEEEeeCCCcEEEe
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASGRL-LKKW-HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW  149 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw  149 (451)
                      ..+..+..|++....++.+++|..    +..|.+||++..+. +..+ ..|...|++++|+| +.++|++|+.||.|.+|
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence            223457788888878888998853    56799999998866 5544 68999999999999 77899999999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc----------
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------  219 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------  219 (451)
                      |+...        .....+...-.|...|..+.|...+. ..|.+-+..++..+|++..+.....+..+.          
T Consensus       194 D~~~d--------~EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~  264 (376)
T KOG1188|consen  194 DTKKD--------NEEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED  264 (376)
T ss_pred             ecCCC--------cchhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence            99653        12223344455888899999988765 568999999999999999887655544221          


Q ss_pred             -ceeEE-EECC-CCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996          220 -VIDAI-ALDP-AEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVR  293 (451)
Q Consensus       220 -~i~~~-~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~dg~i~  293 (451)
                       .-+-+ +.+| +...+++++. -|...++-+.......   ....+..+.+ |..-|+++.|.. +.++.|||.||.+.
T Consensus       265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~---~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~  341 (376)
T KOG1188|consen  265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS---LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ  341 (376)
T ss_pred             hhhheeecccCCCcceEEEeccccCceeEEEeeeccccc---ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence             00111 1223 4455555544 5666666554321110   1133445555 777888999988 99999999999999


Q ss_pred             EEeC
Q 012996          294 VWDP  297 (451)
Q Consensus       294 iwd~  297 (451)
                      +|..
T Consensus       342 ~Wk~  345 (376)
T KOG1188|consen  342 AWKV  345 (376)
T ss_pred             EEec
Confidence            9986

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.1e-24  Score=183.28  Aligned_cols=267  Identities=15%  Similarity=0.287  Sum_probs=205.3

Q ss_pred             EEeecCCCCCCeEEEECcc--CceeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEECCCCceeeeec--
Q 012996            4 LIASSSVADTGIGCWDLES--GAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSL--   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~~--   78 (451)
                      +|.+++ .||+++||.+..  ...+..+..   ...+|.+..  |.|+|. .+++++.. ..++.||+.+.+......  
T Consensus       227 lllvaG-~d~~lrifqvDGk~N~~lqS~~l---~~fPi~~a~--f~p~G~~~i~~s~rr-ky~ysyDle~ak~~k~~~~~  299 (514)
T KOG2055|consen  227 LLLVAG-LDGTLRIFQVDGKVNPKLQSIHL---EKFPIQKAE--FAPNGHSVIFTSGRR-KYLYSYDLETAKVTKLKPPY  299 (514)
T ss_pred             eEEEec-CCCcEEEEEecCccChhheeeee---ccCccceee--ecCCCceEEEecccc-eEEEEeeccccccccccCCC
Confidence            567788 899999999762  223333332   335566777  999999 78888887 999999998877653332  


Q ss_pred             --CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh
Q 012996           79 --PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (451)
Q Consensus        79 --~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  156 (451)
                        ....+.....+|++++|+..+..|.|.+....+++.+.+++ -.+.|..++|+.|++.|++++.+|.|.+||+++   
T Consensus       300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~---  375 (514)
T KOG2055|consen  300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ---  375 (514)
T ss_pred             CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCC---
Confidence              23467788889999999999999999999999999999886 567899999999999999999999999999965   


Q ss_pred             hhhhhcccccceecccCCcCce--eEEEEeecCCeeEEEEeeCCCcEEEEEcCC------Cceeeeee-cccceeEEEEC
Q 012996          157 ECESQRASHLYLHSFTGHTLRI--TDIVIGYGGVSATIVSASEDRTCKVWSLLK------GRLLRNIV-FPSVIDAIALD  227 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~~~~i~~~~~~  227 (451)
                              ..+++.+.. .+.|  ++++.+.++  .++++|+..|.|.|||..+      .+++..+. ....|+++.|+
T Consensus       376 --------~~~~~rf~D-~G~v~gts~~~S~ng--~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn  444 (514)
T KOG2055|consen  376 --------NSCLHRFVD-DGSVHGTSLCISLNG--SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN  444 (514)
T ss_pred             --------cceEEEEee-cCccceeeeeecCCC--ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence                    345555543 2333  456666777  8999999999999999653      34444444 67789999999


Q ss_pred             CCCCEEEEEeC--CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          228 PAEHVFYAGSR--DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       228 ~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      |+..+|+.++.  +..+++..+.+......   +.   .....-+.|+||+||| +.+|+.|..+|.+.+|.+.
T Consensus       445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsN---fP---~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  445 HDAQILAIASRVKKNALRLVHVPSCTVFSN---FP---TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             cchhhhhhhhhccccceEEEeccceeeecc---CC---CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99999998875  55788887766431111   11   1122346799999999 9999999999999999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.8e-24  Score=174.19  Aligned_cols=243  Identities=17%  Similarity=0.222  Sum_probs=185.2

Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      ..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++||+||+.|+|++.|..|.+||+..         
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~---------   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK---------   96 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC---------
Confidence            78999999999999999999999999999998899999999999999999999999999999999999955         


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------cccceeEEEECCCCCEEEEE
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~  236 (451)
                        ..+++.+. ...+|+...|+|...+..+++ -.+..-.+.++..+.. ..+.      .+....+..|++.|+++++|
T Consensus        97 --gs~l~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   97 --GSPLKRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             --CCceeEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEe
Confidence              33444444 567899999999876444444 3444455555554221 1111      12233345689999999999


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCC-cceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-------ce--EEE
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------NI--VRM  305 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-------~~--~~~  305 (451)
                      ...|.+.+||..+.         +++..++-.. ..|..+.++. |++|+.-+.|..||.|++..-       ++  .+.
T Consensus       172 tsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K  242 (405)
T KOG1273|consen  172 TSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK  242 (405)
T ss_pred             cCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence            99999999999886         4455554444 7889999999 999999999999999997621       11  111


Q ss_pred             ee--cCCCCeeEEEEEecCceeeeccCC-CCccccccCCCCCCCcc
Q 012996          306 FR--LAKGPVNNILVVRRPLYLNLGSFS-NPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       306 ~~--~~~~~v~~l~~s~~~~~l~~~s~d-~~i~iw~~~~~~~~~~~  348 (451)
                      +.  ....+-.+++||.+|.|++.++.. ..++||....+.+...+
T Consensus       243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence            11  123356788999999999877744 56999998877665443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.3e-24  Score=179.51  Aligned_cols=215  Identities=21%  Similarity=0.286  Sum_probs=174.4

Q ss_pred             ccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhh-----hhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996          119 HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEEC-----ESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (451)
Q Consensus       119 ~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  191 (451)
                      ..|.+.++.+..++  +..+.++-+..|.|.||++.......     ........++.++.+|...=++++|+|... ..
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g~  226 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-GR  226 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-cc
Confidence            46788888888776  44566777889999999996543221     122245667889999999999999999543 46


Q ss_pred             EEEeeCCCcEEEEEcCCCceeee----eecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          192 IVSASEDRTCKVWSLLKGRLLRN----IVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                      +++|..-+.|++|...++.-...    ..|...|..++|+| ....|++|+-||.|+|||++....       ......+
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~~~~~~k  299 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------KAAVSTK  299 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------cceeEee
Confidence            88999999999999988754321    22888999999999 457889999999999999998742       2233348


Q ss_pred             cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC---CceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccCC
Q 012996          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT---HNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .|.+.|+.|.|+. ..+||+|+.||+++|||++.   ++++.+|+.|.++|++|.|+| +...|++++.|..|.+||+.-
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            8999999999999 66999999999999999875   678999999999999999998 456789999999999999764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=8.7e-24  Score=186.13  Aligned_cols=272  Identities=16%  Similarity=0.243  Sum_probs=209.5

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCccc--CCCCC---------------------
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLRE--QPSAS---------------------   59 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~d---------------------   59 (451)
                      ..||+|+ .||+|+||.+.||.+++++...    ..|.|++  |.|.+..-+  ++...                     
T Consensus       413 ~wlasGs-dDGtvriWEi~TgRcvr~~~~d----~~I~~va--w~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el  485 (733)
T KOG0650|consen  413 EWLASGS-DDGTVRIWEIATGRCVRTVQFD----SEIRSVA--WNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL  485 (733)
T ss_pred             ceeeecC-CCCcEEEEEeecceEEEEEeec----ceeEEEE--ecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence            4689999 9999999999999999988633    4677777  877665422  22221                     


Q ss_pred             ----------CccEEEEECCC---C--ceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccc
Q 012996           60 ----------SGSILYWSWSK---P--QVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAH  121 (451)
Q Consensus        60 ----------~g~i~vw~~~~---~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~  121 (451)
                                ++.+..|.-..   .  .+.....|...|..+.|+..|.||++...+   ..|.|+++.......-|+..
T Consensus       486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks  565 (733)
T KOG0650|consen  486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS  565 (733)
T ss_pred             hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc
Confidence                      12333443221   1  122445578899999999999999987654   45999999888777777777


Q ss_pred             cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      .+.|.++.|+|...+|++++.. .|++||+.           ....+..+......|..+++++.|  ..|+.|+.|+.+
T Consensus       566 kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~-----------kqelvKkL~tg~kwiS~msihp~G--Dnli~gs~d~k~  631 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPYLFVATQR-SVRIYDLS-----------KQELVKKLLTGSKWISSMSIHPNG--DNLILGSYDKKM  631 (733)
T ss_pred             CCceeEEEecCCCceEEEEecc-ceEEEehh-----------HHHHHHHHhcCCeeeeeeeecCCC--CeEEEecCCCee
Confidence            7889999999998899988875 89999993           355566666677789999999998  789999999999


Q ss_pred             EEEEcCCC-ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc----eeEE
Q 012996          202 KVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA----VTCL  275 (451)
Q Consensus       202 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~  275 (451)
                      ..+|+.-. ++.+.+. |...+++++|++.-.+|++|+.||.+.+|--.--.-.....-.-++..+.+|...    |..+
T Consensus       632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~  711 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT  711 (733)
T ss_pred             EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence            99999754 4555555 8889999999999999999999999998853321111111223567788898766    8899


Q ss_pred             EEec-CCEEEEEcCCCcEEEE
Q 012996          276 AYST-GDLLISGSEDGMVRVW  295 (451)
Q Consensus       276 ~~~~-~~~l~s~~~dg~i~iw  295 (451)
                      .|+| ..+|++++.||+|++|
T Consensus       712 ~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  712 IWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccCCCceEEecCCCceEEee
Confidence            9999 9999999999999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.6e-24  Score=181.45  Aligned_cols=236  Identities=17%  Similarity=0.262  Sum_probs=185.4

Q ss_pred             ccCcccCCCCCCccEEEEECCCCc-----eee-----------------eecCCCCeeEEEECCC-CcEEEEeccCCCEE
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQ-----VEV-----------------KSLPAEPIKPIAANSH-GTYIAGGGQSGDIY  105 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~-----~~~-----------------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  105 (451)
                      .|+++|.|..+ ..|.|||+.-..     ..+                 ...|.+.|.+++|+.+ .+.||+|+.|.+|+
T Consensus       191 ~gNyvAiGtmd-p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMD-PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccC-ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            47899999998 899999986211     110                 1136778889999874 56789999999999


Q ss_pred             EEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          106 MWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      +||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+...        .   ....-...+.|-.++|.
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--------~---s~~~wk~~g~VEkv~w~  338 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--------N---SGKEWKFDGEVEKVAWD  338 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--------c---cCceEEeccceEEEEec
Confidence            999999999999999999999999999 67889999999999999997411        0   11111245678889999


Q ss_pred             ecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCcee
Q 012996          185 YGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI  261 (451)
Q Consensus       185 ~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  261 (451)
                      +... ..+++++.||+|+-+|+|.. +++.++. |...|.++++++ ...++++++.|+.+.+|++....+..       
T Consensus       339 ~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-------  410 (463)
T KOG0270|consen  339 PHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-------  410 (463)
T ss_pred             CCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-------
Confidence            8765 67888899999999999986 7888887 999999999998 45678899999999999998765321       


Q ss_pred             eeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEE
Q 012996          262 IGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVR  304 (451)
Q Consensus       262 ~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~  304 (451)
                      +....---+...|.++.|  ..+++.|+..+.++|||+.+...+.
T Consensus       411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            111111123366777778  6788999999999999998776554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.92  E-value=2.6e-23  Score=167.33  Aligned_cols=266  Identities=14%  Similarity=0.167  Sum_probs=202.1

Q ss_pred             ccEEEEECCCCcee----eeecCCCCeeEEEECCC-CcEEEEeccC-------CCEEEEEcCCC---------cceeeec
Q 012996           61 GSILYWSWSKPQVE----VKSLPAEPIKPIAANSH-GTYIAGGGQS-------GDIYMWEVASG---------RLLKKWH  119 (451)
Q Consensus        61 g~i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------g~i~iwd~~~~---------~~~~~~~  119 (451)
                      +.|.+.+++...-.    ....+.+.|..++-+|- .+.|+++..+       -.+.||.+...         +++..+.
T Consensus        40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld  119 (370)
T KOG1007|consen   40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD  119 (370)
T ss_pred             ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC
Confidence            78888877654432    22346889999999994 5556665432       23789988532         3344443


Q ss_pred             -cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996          120 -AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (451)
Q Consensus       120 -~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d  198 (451)
                       .+-+.|.|+.|.|++..+++-. |..|.+|++........     ......-.++....++-+|+|..+++.+++. .|
T Consensus       120 teavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va-----ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d  192 (370)
T KOG1007|consen  120 TEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA-----EVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD  192 (370)
T ss_pred             HHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe-----eecccccccccceecccccCCCCccceEEEe-CC
Confidence             4567999999999999988876 77999999976332100     0111112235667788899996665676665 58


Q ss_pred             CcEEEEEcCCCceeeeee--cccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996          199 RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  275 (451)
                      +++..||+++.+....+.  |...+..+.|+|+.. +|++|+.||.|++||.+..+        .++..+.+|...|+++
T Consensus       193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------~pv~el~~HsHWvW~V  264 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------FPVQELPGHSHWVWAV  264 (370)
T ss_pred             CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------ccccccCCCceEEEEE
Confidence            899999999988888877  778899999999754 67889999999999999876        7788999999999999


Q ss_pred             EEec--CCEEEEEcCCCcEEEEeCCCC-----------------------------ceEEEeecCCCCeeEEEEEe-cCc
Q 012996          276 AYST--GDLLISGSEDGMVRVWDPITH-----------------------------NIVRMFRLAKGPVNNILVVR-RPL  323 (451)
Q Consensus       276 ~~~~--~~~l~s~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~s~-~~~  323 (451)
                      .|+|  ..++++||.|..|.+|...+-                             ..+.++..|...|.+++||. |.-
T Consensus       265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW  344 (370)
T KOG1007|consen  265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW  344 (370)
T ss_pred             EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence            9999  889999999999999964321                             12456778999999999997 666


Q ss_pred             eeeeccCCCCccccccCC
Q 012996          324 YLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       324 ~l~~~s~d~~i~iw~~~~  341 (451)
                      .||+-|+||.+.|-++..
T Consensus       345 iFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  345 IFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eEEEeccCceEEeecCCh
Confidence            779999999999887653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=3.7e-23  Score=176.54  Aligned_cols=252  Identities=17%  Similarity=0.222  Sum_probs=196.0

Q ss_pred             ecCCCCeeEEEECCCC--cEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEe
Q 012996           77 SLPAEPIKPIAANSHG--TYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW  149 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw  149 (451)
                      ..+.++|++++|+|..  +++|+|...|.|-+||+.+.    .-+..+..|.++|.++.|+| +...+++.+.||+|++-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            3467899999999954  58899999999999999532    34567789999999999999 66789999999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEEC
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALD  227 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~  227 (451)
                      |++..         ....+.....-.....++.|+.+.  ..++.+..=|...+||.+++.. ...+. |...|.+++++
T Consensus       263 D~~~~---------i~e~v~s~~~d~~~fs~~d~~~e~--~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  263 DFEGN---------ISEEVLSLDTDNIWFSSLDFSAES--RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eecch---------hhHHHhhcCccceeeeeccccCCC--ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            99662         122233333344566677777766  5677777777999999998754 44444 67799999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC----CCCc
Q 012996          228 P-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP----ITHN  301 (451)
Q Consensus       228 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~----~~~~  301 (451)
                      | ...+|++++.|++.+|||++.......     ++-....|...|.+..||| +..|+|.+.|..|+|||.    ....
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~  406 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE  406 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence            9 556789999999999999998653322     2344557999999999999 666999999999999998    3445


Q ss_pred             eEEEeecCCC-----CeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          302 IVRMFRLAKG-----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       302 ~~~~~~~~~~-----~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      ++.++.+...     ......|.|+-.++++|-.-..|-|++-.+++.
T Consensus       407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~  454 (498)
T KOG4328|consen  407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM  454 (498)
T ss_pred             ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence            5666653222     345568999999999999999999999888763

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=6.1e-23  Score=172.75  Aligned_cols=284  Identities=18%  Similarity=0.260  Sum_probs=210.6

Q ss_pred             CceEEecceEeeccC-cccCCCCCCccEEEEECCCCc-------ee---eeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996           37 HGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQ-------VE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~-------~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  105 (451)
                      ..+..+.  |.+++. .+|++|.| ..|++|-++...       +.   ....|...|+++.|+|+|..||+|+.+|.|.
T Consensus        14 ~pv~s~d--fq~n~~~~laT~G~D-~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   14 EPVYSVD--FQKNSLNKLATAGGD-KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             CceEEEE--eccCcccceecccCc-cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            4455666  777766 89999999 999999876332       11   2245889999999999999999999999999


Q ss_pred             EEEcC--------C--------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996          106 MWEVA--------S--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (451)
Q Consensus       106 iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  169 (451)
                      +|-..        +        ......+.+|...|..++|+|++.++++++.|..+++||+.           ......
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-----------~G~l~~  159 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-----------AGQLLA  159 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-----------cceeEe
Confidence            99765        2        12234567899999999999999999999999999999994           466788


Q ss_pred             cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------------------c----ccceeEEE
Q 012996          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------------------F----PSVIDAIA  225 (451)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~----~~~i~~~~  225 (451)
                      .+..|...+..++|.|-+  .++++-+.|...+.+.+...+.+....                    |    +.-...++
T Consensus       160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls  237 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS  237 (434)
T ss_pred             eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence            889999999999999987  899999999877777765443332221                    1    12245678


Q ss_pred             ECCCCCEEEEEeC----CC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-----------------
Q 012996          226 LDPAEHVFYAGSR----DG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----------------  279 (451)
Q Consensus       226 ~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------  279 (451)
                      |+|+|..+++...    .+     ..++|+-....        ++...+.....++..+.++|                 
T Consensus       238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~l  309 (434)
T KOG1009|consen  238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVL  309 (434)
T ss_pred             cCCCCcEEEcccceeeeCCceeeceeEeecccccc--------CceeecCCCCcceEEEEeeeeEEEecccccccccccc
Confidence            9999999987542    22     23444433221        33334444444444444433                 


Q ss_pred             --CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996          280 --GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       280 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~  345 (451)
                        +..++.++ ...|.|||..+..++.... .|-.+|++++|++||.+|+..|.||..-+-.+.+..+.
T Consensus       310 pyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  310 PYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             ccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence              23455554 4579999999988887654 67889999999999999999999999877777665554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.1e-24  Score=185.26  Aligned_cols=262  Identities=16%  Similarity=0.208  Sum_probs=193.3

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      .|.+.|+.+.|.|....|++++.||.|.+|+++.        -+.+.+|++|.++|.|+++.+++.++++|+-||+|+.|
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            3677899999999999999999999999999932        15678899999999999999999999999999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEE
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL  226 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~  226 (451)
                      ++... ...............+.||...|+.++++...  ..|++++.||++++|+.....+ ..+.   ..+...++.+
T Consensus       372 ~~p~n-~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  372 NLPPN-QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             ccCCC-CCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            87521 11111112234566789999999999999988  7899999999999999876665 3332   2334455555


Q ss_pred             CCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE
Q 012996          227 DPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR  304 (451)
Q Consensus       227 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~  304 (451)
                      -... ...++...-+.-.++++.......... .. ..........+..+.++| ..+.+++..|+.|+++|..++.++.
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~-s~-~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE-SS-ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeecc-cc-CCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            4332 222222222322333333221100000 00 000011124577788889 9999999999999999999999999


Q ss_pred             EeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996          305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       305 ~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~  345 (451)
                      ....|...++++++.|+|.+|++++.|+.+++|+.....+.
T Consensus       526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             heeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            99999999999999999999999999999999998765443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=1.4e-22  Score=166.06  Aligned_cols=281  Identities=15%  Similarity=0.202  Sum_probs=202.1

Q ss_pred             EEEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceee
Q 012996            3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV   75 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~   75 (451)
                      ..+|+.+  ...+.+|......   .+..+... .+......++  |+-+    ..++|++|.- |.|+|.|+.+++..-
T Consensus        56 ~vfatvG--~~rvtiy~c~~d~~ir~lq~y~D~-d~~Esfytcs--w~yd~~~~~p~la~~G~~-GvIrVid~~~~~~~~  129 (385)
T KOG1034|consen   56 QVFATVG--GNRVTIYECPGDGGIRLLQSYADE-DHDESFYTCS--WSYDSNTGNPFLAAGGYL-GVIRVIDVVSGQCSK  129 (385)
T ss_pred             ceEEEeC--CcEEEEEEECCccceeeeeeccCC-CCCcceEEEE--EEecCCCCCeeEEeecce-eEEEEEecchhhhcc
Confidence            3566666  5688899876433   33333322 3555555555  6543    4578888887 999999999888764


Q ss_pred             e-ecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           76 K-SLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        76 ~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      . ..|...|+.|.+.|+. +++++++.|..|++|++++..++..+   .+|.+.|.++.|+++|.+|+++|.|..|++|+
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence            3 5689999999999965 68899999999999999999999887   67999999999999999999999999999999


Q ss_pred             Ccchhhhhhhhc---------------c--cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCce-
Q 012996          151 LLTVFEECESQR---------------A--SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRL-  211 (451)
Q Consensus       151 ~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~-  211 (451)
                      +....-......               .  ..+...+-..|...|.|+.|--    +++++-+.++.|..|... -.+. 
T Consensus       210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~  285 (385)
T KOG1034|consen  210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESI  285 (385)
T ss_pred             cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhh
Confidence            973211110000               0  0000113345777888877743    689999999999999872 1111 


Q ss_pred             ------------eeeeec-cccee--EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE
Q 012996          212 ------------LRNIVF-PSVID--AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (451)
Q Consensus       212 ------------~~~~~~-~~~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  276 (451)
                                  +..+.. ...|.  ..+|+|-++.|+.|...|.|++||++...+..     ............|...+
T Consensus       286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~-----~ttl~~s~~~~tVRQ~s  360 (385)
T KOG1034|consen  286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK-----CTTLTHSKSGSTVRQTS  360 (385)
T ss_pred             hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc-----CceEEeccccceeeeee
Confidence                        112221 12333  34667889999999999999999999876421     11111122346889999


Q ss_pred             Eec-CCEEEEEcCCCcEEEEeCC
Q 012996          277 YST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       277 ~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      |+. +.+|+..+.|++|.-||..
T Consensus       361 fS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  361 FSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ecccCcEEEEEeCCCcEEEEEee
Confidence            999 9999999999999999854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=4e-22  Score=178.00  Aligned_cols=263  Identities=16%  Similarity=0.244  Sum_probs=211.2

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~   81 (451)
                      |++||+|+    .+.+||...|..+.++++   |...|.|++  |+.+|+.+|+|+.| ..|.+|+-. -+-..+..|.+
T Consensus        26 qL~lAAg~----rlliyD~ndG~llqtLKg---HKDtVycVA--ys~dGkrFASG~aD-K~VI~W~~k-lEG~LkYSH~D   94 (1081)
T KOG1538|consen   26 QLILAAGS----RLLVYDTSDGTLLQPLKG---HKDTVYCVA--YAKDGKRFASGSAD-KSVIIWTSK-LEGILKYSHND   94 (1081)
T ss_pred             eEEEecCC----EEEEEeCCCccccccccc---ccceEEEEE--EccCCceeccCCCc-eeEEEeccc-ccceeeeccCC
Confidence            45666666    799999999999988886   558899999  99999999999999 999999843 33446777999


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .|.|+.|+|-...|++++-+ ..-+|........+ . .....|.+.+|..||++|+.|-.||+|.+-+-..        
T Consensus        95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g--------  163 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG--------  163 (1081)
T ss_pred             eeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC--------
Confidence            99999999999999997764 57788765433222 1 2345788999999999999999999999986532        


Q ss_pred             cccccceecccCCcCceeEEEEeecC---CeeEEEEeeCCCcEEEEEcCCCceee-eeecccceeEEEECCCCCEEEEEe
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGG---VSATIVSASEDRTCKVWSLLKGRLLR-NIVFPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~  237 (451)
                       .....+....+...+|.+++|+|..   ....+++.....++.+|.+. |+.+. .-...-...|+.+.|+|.++..|+
T Consensus       164 -Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  164 -EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             -CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence             2233444556678899999999853   34688999999999999985 44444 444666778999999999999999


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      .|+.+.+|.-..          -.+.++.....+|+.++..| +.+++.|+.||+|..|++.
T Consensus       242 sdk~L~~fTR~G----------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  242 SDKQLSLFTRDG----------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CCCceEEEeecC----------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            999999997654          34566666788999999999 9999999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=9.7e-22  Score=180.84  Aligned_cols=272  Identities=15%  Similarity=0.181  Sum_probs=202.7

Q ss_pred             ccEEEEECCCCc-eeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcc--eee----eccccCCeeEEEEcc
Q 012996           61 GSILYWSWSKPQ-VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRL--LKK----WHAHYRAVTCLVFSE  132 (451)
Q Consensus        61 g~i~vw~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~  132 (451)
                      +.+.||++..+. ..........|.|+.|+| +.++++.|+.+|.|.+||++.+..  ...    ...|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            579999998773 334455678999999999 667888999999999999987755  222    246889999999977


Q ss_pred             CC--cEEEEeeCCCcEEEeeCcchhhhhhhhcccc-cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE---c
Q 012996          133 DG--SFLISGSEDGCVRIWSLLTVFEECESQRASH-LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS---L  206 (451)
Q Consensus       133 ~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd---~  206 (451)
                      +.  .-|++++.||.|+.|+++............. .....-......++++.|.+... ..++.|+.+|.|.--+   .
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCC
Confidence            44  4499999999999999876433221111111 00111112345678889987655 7899999999887733   2


Q ss_pred             CCCc-----ee-eeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996          207 LKGR-----LL-RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (451)
Q Consensus       207 ~~~~-----~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  279 (451)
                      +...     .. ....|.++|+++.++|-+..++..+.|..+++|......        .++..+..+...|++++||| 
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--------~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--------SPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--------CcchhhhhccceeeeeEEcCc
Confidence            2222     11 222378999999999977666655559999999987332        45666777888899999999 


Q ss_pred             -CCEEEEEcCCCcEEEEeCCC--CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          280 -GDLLISGSEDGMVRVWDPIT--HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       280 -~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                       ...|+++..||.|.+||+..  ..++.+...+....+.+.|++.|+.|++|...|.+.+|++..
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence             77999999999999999864  456666666667788889999999999999999999999763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=1.9e-22  Score=165.25  Aligned_cols=288  Identities=17%  Similarity=0.243  Sum_probs=209.6

Q ss_pred             CCCCceEEecceEe---e--ccCcccCCCCCCccEEEEECCCCc--eeee----ecCCCCeeEEEECCC----CcEEEEe
Q 012996           34 SPPHGLACVGQRFL---A--SSQLREQPSASSGSILYWSWSKPQ--VEVK----SLPAEPIKPIAANSH----GTYIAGG   98 (451)
Q Consensus        34 ~~~~~v~~~~~~~~---~--~~~~l~~~~~d~g~i~vw~~~~~~--~~~~----~~~~~~v~~~~~~~~----~~~l~~~   98 (451)
                      .|...|..++  |.   .  .-+.+|++|.  ..+.+|.....-  ....    ..+.+....++|+-+    ..++|+|
T Consensus        36 d~~~~I~gv~--fN~~~~~~e~~vfatvG~--~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   36 DHNKPIFGVA--FNSFLGCDEPQVFATVGG--NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             cCCCccceee--eehhcCCCCCceEEEeCC--cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3445566555  44   2  2345566666  689999876433  1111    125677888888653    5688999


Q ss_pred             ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee---cccCC
Q 012996           99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH---SFTGH  174 (451)
Q Consensus        99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~  174 (451)
                      +.-|.|+|.|+.++++...+.+|...|+.+.++|+ .+++++++.|..|++|++++           ..++.   ...+|
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-----------~~Cv~VfGG~egH  180 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-----------DVCVAVFGGVEGH  180 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-----------CeEEEEecccccc
Confidence            99999999999999999999999999999999994 57899999999999999965           33333   45689


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------------------------cccceeEEE
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIA  225 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~  225 (451)
                      ...|.++.|+.++  .++++++.|..+++|++...+....+.                             |...|.|+.
T Consensus       181 rdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  181 RDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            9999999999999  799999999999999997433221111                             222333333


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEccCCCCC-----CCCCCceeeeeeccCCcceeEEEE--ec-CCEEEEEcCCCcEEEEeC
Q 012996          226 LDPAEHVFYAGSRDGSIYIAALNAESPS-----TSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      |  -|+++++-+-++.|..|....-...     ........+..+.-....|+-+.|  .| ++.||.|...|.|.+||+
T Consensus       259 w--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  259 W--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             H--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence            3  2578888888999999987321111     111112334455555566666655  45 899999999999999999


Q ss_pred             CCCceEE--EeecC--CCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          298 ITHNIVR--MFRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       298 ~~~~~~~--~~~~~--~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +..++..  ++..+  ...|...+|+.||..|+....|++|.-||.-
T Consensus       337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            8876632  23222  3479999999999999999999999999853

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=8.6e-22  Score=175.93  Aligned_cols=271  Identities=16%  Similarity=0.184  Sum_probs=214.9

Q ss_pred             ceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  116 (451)
                      +|..++  |-|||..|+.+..  ..+.+||.+.+... ....|.+.|.|++|+.||..+|+|+.|..|.+|.-+-.-.+ 
T Consensus        14 ci~d~a--fkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-   88 (1081)
T KOG1538|consen   14 CINDIA--FKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-   88 (1081)
T ss_pred             chheeE--ECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence            677778  9999999988877  58999999876654 45679999999999999999999999999999985322222 


Q ss_pred             eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc--CceeEEEEeecCCeeEEEE
Q 012996          117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~s  194 (451)
                      . ..|.+.|.|+.|+|-...|++++.. ..-+|....               .....|.  ..+.+.+|..+|  .+++.
T Consensus        89 k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q---------------K~V~K~kss~R~~~CsWtnDG--qylal  149 (1081)
T KOG1538|consen   89 K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ---------------KSVSKHKSSSRIICCSWTNDG--QYLAL  149 (1081)
T ss_pred             e-eccCCeeeEeecCchHHHhhhcchh-hccccChhh---------------hhHHhhhhheeEEEeeecCCC--cEEEE
Confidence            2 3699999999999988899998875 678898743               1122233  455566666666  99999


Q ss_pred             eeCCCcEEEEEcCCCceeeeee----cccceeEEEECCCC-----CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      |-.+|+|.+-+- +++....+.    .+++|.+++|+|..     ..+++.....++.+|.+...          .+..-
T Consensus       150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~----------~Igk~  218 (1081)
T KOG1538|consen  150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK----------QIGKD  218 (1081)
T ss_pred             eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----------eeccc
Confidence            999999999874 455444444    46789999999953     57888888888888888763          23333


Q ss_pred             ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       266 ~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      +.-.-...|+.+.+ |.+++.|+.|+.+.+|- +.|-.+.++......|+.++..|++++++.|+.||++.-|++-....
T Consensus       219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTV  297 (1081)
T KOG1538|consen  219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTV  297 (1081)
T ss_pred             ccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHh
Confidence            33445667888889 99999999999999997 67888888888888999999999999999999999999888654433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=1.6e-19  Score=170.03  Aligned_cols=315  Identities=26%  Similarity=0.446  Sum_probs=238.4

Q ss_pred             EEeecCCCCCCeEEEECccCc-eeeeeecCCCCCCceEEecceE-eeccC-cccCCCCCCccEEEEECCC--Cceeeeec
Q 012996            4 LIASSSVADTGIGCWDLESGA-EQLRYKSCASPPHGLACVGQRF-LASSQ-LREQPSASSGSILYWSWSK--PQVEVKSL   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~l~~~~~d~g~i~vw~~~~--~~~~~~~~   78 (451)
                      .++.++ .|+.+.+|+...+. ....+.....  ..+..+.  + .+++. .++..+..++.+.+|+...  ........
T Consensus        79 ~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  153 (466)
T COG2319          79 LLLSGS-SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLA--LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG  153 (466)
T ss_pred             EEEEec-CCCcEEEEEcCCCceeEEEEeccCC--CceeeEE--EECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec
Confidence            456666 79999999998876 6666655332  3555555  4 67777 4555455349999999987  44455667


Q ss_pred             CCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFE  156 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~  156 (451)
                      |...|..+.|+|++.++++++. ++.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...   
T Consensus       154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---  230 (466)
T COG2319         154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---  230 (466)
T ss_pred             CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---
Confidence            8899999999999998888885 99999999999888999999999999999999987 555669999999998742   


Q ss_pred             hhhhhccccccee-cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeee-ecccceeEEEECCCCCEE
Q 012996          157 ECESQRASHLYLH-SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-VFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       157 ~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~i~~~~~~~~~~~l  233 (451)
                              ..... .+.+|.... ...|++++  ..+++++.|+.+++|++..... ...+ .+...+.++.|.|++..+
T Consensus       231 --------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  299 (466)
T COG2319         231 --------GKLLRSTLSGHSDSV-VSSFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL  299 (466)
T ss_pred             --------CcEEeeecCCCCcce-eEeECCCC--CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence                    33334 577777775 33788887  7888999999999999987664 3333 367889999999988888


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeee--eccCCcceeEEEEecC-CEEEEE-cCCCcEEEEeCCCCceEEEeecC
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYSTG-DLLISG-SEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      ++++.|+.+.+|+.....         ....  ...|...+..+.+.+. ..++.+ ..|+.+.+|+.............
T Consensus       300 ~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  370 (466)
T COG2319         300 ASGSSDGTVRLWDLETGK---------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH  370 (466)
T ss_pred             EEeeCCCcEEEEEcCCCc---------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence            889999999999887753         1222  2467778999999323 566666 68899999999888733333332


Q ss_pred             CCCeeEEEEEecCceeee-ccCCCCccccccCCCCCCCcc
Q 012996          310 KGPVNNILVVRRPLYLNL-GSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~-~s~d~~i~iw~~~~~~~~~~~  348 (451)
                       ..+..+.+++ ...+.. +..++.+.+|+..........
T Consensus       371 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (466)
T COG2319         371 -SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL  408 (466)
T ss_pred             -ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence             2388999999 544444 689999999998876554433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.8e-22  Score=189.68  Aligned_cols=234  Identities=22%  Similarity=0.303  Sum_probs=188.0

Q ss_pred             EEEeecCCCCCCeEEEECcc---CceeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEECCCCceeeee-
Q 012996            3 LLIASSSVADTGIGCWDLES---GAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKS-   77 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~-   77 (451)
                      -+||.|. .||.|.+||...   +.....+.....|.+.|..+.  |.+... .||+|+.+ |.|.|||+++.+..... 
T Consensus        81 GlIaGG~-edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLD--fN~~q~nlLASGa~~-geI~iWDlnn~~tP~~~~  156 (1049)
T KOG0307|consen   81 GLIAGGL-EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLD--FNPFQGNLLASGADD-GEILIWDLNKPETPFTPG  156 (1049)
T ss_pred             ceeeccc-cCCceEEecchhhccCcchHHHhhhcccCCceeeee--ccccCCceeeccCCC-CcEEEeccCCcCCCCCCC
Confidence            3678888 999999999875   444444444555666777777  999877 66666666 99999999987665444 


Q ss_pred             --cCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccC--CeeEEEEccCC-cEEEEeeCCC---cEEE
Q 012996           78 --LPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR--AVTCLVFSEDG-SFLISGSEDG---CVRI  148 (451)
Q Consensus        78 --~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~s~~~dg---~i~v  148 (451)
                        ...+.|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..|.+  .+..+.|+|+. ..+++++.|.   .|.+
T Consensus       157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql  236 (1049)
T KOG0307|consen  157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL  236 (1049)
T ss_pred             CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence              24678999999874 56789999999999999999888777755544  57789999965 4566666653   5999


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEEC
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD  227 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~  227 (451)
                      ||++.          ...+++.+.+|...|.++.|++.+. .++++++.|+.|.+|+..+++.+..+. ....+..+.|+
T Consensus       237 WDlR~----------assP~k~~~~H~~GilslsWc~~D~-~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  237 WDLRF----------ASSPLKILEGHQRGILSLSWCPQDP-RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             ecccc----------cCCchhhhcccccceeeeccCCCCc-hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence            99964          4556778899999999999998765 799999999999999999999999988 56779999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEEccCCC
Q 012996          228 PAE-HVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       228 ~~~-~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      |.. ..+++++.||.|.||.+....
T Consensus       306 pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  306 PRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcchhhhheeccceeeeeeecCC
Confidence            965 488899999999999998764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5.3e-22  Score=163.56  Aligned_cols=230  Identities=15%  Similarity=0.242  Sum_probs=175.9

Q ss_pred             cEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996           93 TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus        93 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                      ..+|++..+|.|++||..+++.+..++++...++.+.|..  ....+.+|+.||+|++||++.         ........
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs---------~~e~a~~~  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS---------QAESARIS  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec---------chhhhhee
Confidence            5688999999999999999999999999999999999987  456799999999999999987         33334445


Q ss_pred             ccCCc-CceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCCce-eeeee--cccceeEEEECC-CCCEEEEEeCCCc
Q 012996          171 FTGHT-LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRL-LRNIV--FPSVIDAIALDP-AEHVFYAGSRDGS  241 (451)
Q Consensus       171 ~~~~~-~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~  241 (451)
                      +..++ .+..+++.....  +++++|+.    +-.|.+||++..+. +..+.  |...|+++.|+| +.+.|++|+.||.
T Consensus       112 ~~~~~~~~f~~ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  112 WTQQSGTPFICLDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             ccCCCCCcceEeeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence            55555 455555555444  67777753    66899999998776 66655  889999999999 6789999999999


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEE---------------
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVR---------------  304 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~---------------  304 (451)
                      |.+||+......      ..+.....|...|.++.|..  -+.|.+-+..++..+|+++.+.+..               
T Consensus       190 vnlfD~~~d~Ee------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~  263 (376)
T KOG1188|consen  190 VNLFDTKKDNEE------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE  263 (376)
T ss_pred             EEeeecCCCcch------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence            999999875311      22333445677788888877  3467777778888888776543211               


Q ss_pred             ----------------------------------------------Eee-cCCCCeeEEEEEecCceeeeccCCCCcccc
Q 012996          305 ----------------------------------------------MFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (451)
Q Consensus       305 ----------------------------------------------~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw  337 (451)
                                                                    .+. +|..-|.++.|...+.++.||+.||.+.+|
T Consensus       264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence                                                          111 244457778888888899999999999999


Q ss_pred             cc
Q 012996          338 RR  339 (451)
Q Consensus       338 ~~  339 (451)
                      ..
T Consensus       344 k~  345 (376)
T KOG1188|consen  344 KV  345 (376)
T ss_pred             ec
Confidence            96

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=158.65  Aligned_cols=287  Identities=11%  Similarity=0.069  Sum_probs=217.3

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCC------Cceeee--ecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQVEVK--SLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~------~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  105 (451)
                      +|-.+|.++.  |+.++++|++||.| ..+++|+++.      ++....  ..|...|.|++|...++++.+|+.+++|.
T Consensus        54 ~H~GCiNAlq--FS~N~~~L~SGGDD-~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   54 EHTGCINALQ--FSHNDRFLASGGDD-MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhccccceee--eccCCeEEeecCCc-ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            4667788888  99999999999998 9999999862      222222  23568999999999999999999999999


Q ss_pred             EEEcCCCcceeeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          106 MWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       106 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                      ..|+++.+.+..+.  ...+.|..+..+|-.+.|++.+.+|.|.+||.+..        ........+.........+.|
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~--------~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR--------QNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC--------CCCCceeeecCCCccceeeee
Confidence            99999998888774  23458999999998899999999999999999762        111122223334456677888


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee----ccc---ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV----FPS---VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                      +|... .+|++.+..+-+-+||++.... +....    .+.   .-.++.|+|+|..|++--....-.+||+-....   
T Consensus       203 ~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~---  278 (609)
T KOG4227|consen  203 HPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC---  278 (609)
T ss_pred             cCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc---
Confidence            88765 7899999999999999986532 11111    122   235688999999998877777777888877531   


Q ss_pred             CCCceeeeeeccC-------CcceeEEEEecCCEEEEEcCCCcEEEEeCCC----------C-------------ceEEE
Q 012996          256 SYGMHIIGSLSDH-------SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT----------H-------------NIVRM  305 (451)
Q Consensus       256 ~~~~~~~~~~~~~-------~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~-------------~~~~~  305 (451)
                           ++..+ .|       ...+.+++|.....+++|+.+-.|.+|.+..          |             ..+..
T Consensus       279 -----~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~V  352 (609)
T KOG4227|consen  279 -----FVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTV  352 (609)
T ss_pred             -----eeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEE
Confidence                 11111 12       2356677887656699999999999998642          1             12456


Q ss_pred             eecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          306 FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       306 ~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +++|.+-+..+.|+|...+|++.+-.+.+++|.-..
T Consensus       353 LrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  353 LRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             EecccccccceeecCCcceEeccchhhheecccccc
Confidence            789999999999999999999999999999998653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=1.8e-21  Score=159.31  Aligned_cols=222  Identities=20%  Similarity=0.260  Sum_probs=178.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCC--CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-----
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCA--SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-----   75 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-----   75 (451)
                      .++|+.+ .+.-|++||.-+|+...++++-.  ....+..+++  |+|||..|++|-.  ..|+++|+..+-...     
T Consensus       124 ~l~a~ss-r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~--Fs~DGeqlfaGyk--rcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  124 NLFAVSS-RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQ--FSPDGEQLFAGYK--RCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             ceeeecc-ccCceeeeeccccccccchhhhhhHHhhhhheeEE--ecCCCCeEeeccc--ceEEEeeccCCCCCCcchhh
Confidence            4677788 99999999999999998886543  2334556777  9999999998877  799999995332111     


Q ss_pred             ----eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEe
Q 012996           76 ----KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIW  149 (451)
Q Consensus        76 ----~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vw  149 (451)
                          +....+-+.|++|+|- ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|+. |-.|..|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence                1122567899999995 458999999999999998888999999999999999999999999999987 6689999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcC-ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEE
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIAL  226 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~  226 (451)
                      |++.          ...++..+..|.. .-..|.|.-++.+++|++|+.||.|++||+.. +..+..+. +...++.+++
T Consensus       279 DiR~----------~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  279 DIRY----------SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             eehh----------ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence            9965          4556667777766 44567777666669999999999999999988 66555554 7788999999


Q ss_pred             CCCCCEEEEEeCC
Q 012996          227 DPAEHVFYAGSRD  239 (451)
Q Consensus       227 ~~~~~~l~~~~~d  239 (451)
                      +|.-.++++++..
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9998888877643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=3.9e-19  Score=167.40  Aligned_cols=286  Identities=28%  Similarity=0.499  Sum_probs=225.8

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--eeeeecCC-CCeeEEEE-CCCCc-EEEEecc-CCCEEEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPA-EPIKPIAA-NSHGT-YIAGGGQ-SGDIYMW  107 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~iw  107 (451)
                      .+...+..+.  +.+.+..++.++.+ +.+.+|+.....  ........ ..+..+.+ ++++. +++..+. |+.+.+|
T Consensus        63 ~~~~~i~~~~--~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          63 GHEDSITSIA--FSPDGELLLSGSSD-GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eccceEEEEE--ECCCCcEEEEecCC-CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            4556777777  99999999988877 999999998875  22222222 36777777 88887 5555444 8999999


Q ss_pred             EcCC-CcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          108 EVAS-GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       108 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      +... ......+..|...|.+++|+|++..+++++. |+.+++|++..           ...+..+.+|...|.+++|++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~  208 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-----------GKPLSTLAGHTDPVSSLAFSP  208 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-----------CceEEeeccCCCceEEEEEcC
Confidence            9988 7788888999999999999999998888886 99999999943           445666777999999999997


Q ss_pred             cCCeeEEEEeeCCCcEEEEEcCCCceee-eee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee
Q 012996          186 GGVSATIVSASEDRTCKVWSLLKGRLLR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (451)
Q Consensus       186 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (451)
                      ++. ..+++++.|+.+++||...+.... .+. +.... ...|+|++..+++++.|+.+++|+......        ...
T Consensus       209 ~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~  278 (466)
T COG2319         209 DGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLR  278 (466)
T ss_pred             Ccc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEE
Confidence            762 255556999999999998777776 344 44443 338999998999999999999999987642        222


Q ss_pred             eeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEEecCceeeec-cCCCCcccccc
Q 012996          264 SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRR  339 (451)
Q Consensus       264 ~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~-s~d~~i~iw~~  339 (451)
                      .+.+|...+.++.|+| +..+++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ ..|+.+.+|+.
T Consensus       279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence            3367899999999999 8888889999999999999888777776  787789999993332455555 68888999998


Q ss_pred             CCCC
Q 012996          340 HGSQ  343 (451)
Q Consensus       340 ~~~~  343 (451)
                      ....
T Consensus       359 ~~~~  362 (466)
T COG2319         359 RTGK  362 (466)
T ss_pred             CCCc
Confidence            8665

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.8e-20  Score=175.77  Aligned_cols=283  Identities=20%  Similarity=0.296  Sum_probs=207.5

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEee--ccCcccCCCCCCccEEEEECCCC---ceeee
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKP---QVEVK   76 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~g~i~vw~~~~~---~~~~~   76 (451)
                      |-.++++. ..-.|+|||.+.++.+..|..+..+...|+.+.  +..  |..++++++.| |.|+||+-...   .....
T Consensus      1076 ~p~i~~ad-~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~--liNe~D~aLlLtas~d-GvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1076 EPQIAAAD-DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLE--LINEQDDALLLTASSD-GVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred             CceeEEcC-CcceEEEEecccCceeccccCCCCCCCccceee--eecccchhheeeeccC-ceEEEecccccccCCceeE
Confidence            45678888 788999999999999999998888888888887  654  45667777777 99999974321   11111


Q ss_pred             ec----------CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEcc-CCcEEEEeeCCC
Q 012996           77 SL----------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSE-DGSFLISGSEDG  144 (451)
Q Consensus        77 ~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~dg  144 (451)
                      ..          ..+.=.-++|.....+|+++|.-..|+|||......+..+. +....|+++.-+. .|+.+++|..||
T Consensus      1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred             EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence            10          11111445677766666666667889999998877766653 3445667765543 579999999999


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccCCcCc--eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee--ee----
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLR--ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN--IV----  216 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~----  216 (451)
                      .|++||.+..        .....+.....|+..  |..+.+.+.|.+ .|++|+.+|.|++||++.......  +.    
T Consensus      1232 svRvyD~R~a--------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1232 SVRVYDRRMA--------PPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred             ceEEeecccC--------CccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceeeeccc
Confidence            9999999762        233456677888887  999999888763 799999999999999997422221  21    


Q ss_pred             cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996          217 FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (451)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw  295 (451)
                      ..+..+++..++....+++|+. +.|.||++.........+......   ...+.+.|++|+| .-++|+|+.|.+|.||
T Consensus      1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~---q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMG---QRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccccc---CcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            2345999999999999999998 999999998765322221111111   1235679999999 8899999999999999


Q ss_pred             eCCCCc
Q 012996          296 DPITHN  301 (451)
Q Consensus       296 d~~~~~  301 (451)
                      .....+
T Consensus      1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred             ecCCcC
Confidence            876543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=4.4e-21  Score=170.48  Aligned_cols=154  Identities=19%  Similarity=0.242  Sum_probs=121.6

Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee-------eeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-------RNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  248 (451)
                      |+++.|.|-.. ..|++++.||.|++|.+..+-..       ..+. |...|+++.|+| ..+.|++++.|-+|++||+.
T Consensus       630 vtDl~WdPFD~-~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  630 VTDLHWDPFDD-ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeecccCCCCh-HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            55566666443 78999999999999998764322       2233 778899999999 67889999999999999999


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCC-CCeeEEEEEecCcee
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAK-GPVNNILVVRRPLYL  325 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~-~~v~~l~~s~~~~~l  325 (451)
                      +.         .....+.+|...|.+++||| |+.+++.+.||+|++|+.++++ ++++-++.. ..--.+.|.-||+++
T Consensus       709 ~~---------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v  779 (1012)
T KOG1445|consen  709 NA---------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV  779 (1012)
T ss_pred             hh---------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence            86         44568899999999999999 9999999999999999998764 444433322 234568899999999


Q ss_pred             eeccCCCC----ccccccCC
Q 012996          326 NLGSFSNP----HTSSRRHG  341 (451)
Q Consensus       326 ~~~s~d~~----i~iw~~~~  341 (451)
                      ++.+.|..    +.+|+...
T Consensus       780 iv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  780 IVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             EEecccccchhhhhhhhhhh
Confidence            99887754    66777553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=4.2e-21  Score=152.80  Aligned_cols=255  Identities=14%  Similarity=0.142  Sum_probs=190.9

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc---
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT---  153 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---  153 (451)
                      .|...|+++.|-.+++ |.+|..-|.|++|++.+...+..++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-   
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~   89 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF   89 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence            5778899999987776 8889999999999999998888887 67788999998887 4588999999999999854   


Q ss_pred             -----------hhhhhhhhccc------------------------cccee----cccCCcCceeEEEEeec-CCeeEEE
Q 012996          154 -----------VFEECESQRAS------------------------HLYLH----SFTGHTLRITDIVIGYG-GVSATIV  193 (451)
Q Consensus       154 -----------~~~~~~~~~~~------------------------~~~~~----~~~~~~~~i~~i~~~~~-~~~~~l~  193 (451)
                                 ++.........                        ...+.    .-.+..+.+.+..+... +..-+++
T Consensus        90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll  169 (323)
T KOG0322|consen   90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL  169 (323)
T ss_pred             EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence                       11110000000                        00000    00123344555553322 2224677


Q ss_pred             EeeCCCcEEEEEcCCCceeeee-----------ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996          194 SASEDRTCKVWSLLKGRLLRNI-----------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (451)
                      +|..+|.+.+||+.++..+-.+           .|..++.++.+.+....=++|+.+..+..|+++......     +.-
T Consensus       170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-----q~~  244 (323)
T KOG0322|consen  170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-----QIR  244 (323)
T ss_pred             EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc-----ccc
Confidence            8889999999999987333222           267889999999876666788888899999987653211     111


Q ss_pred             eeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          263 GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       263 ~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ....-....|..+..-| ++.+||++.|+.||||+.++.+++..++.|.+.|.+++|+|+...+|.+|.|+.|-+|++
T Consensus       245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22223345788889999 999999999999999999999999999999999999999999999999999999999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.86  E-value=1.6e-20  Score=163.74  Aligned_cols=261  Identities=15%  Similarity=0.178  Sum_probs=191.9

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEE-CC-------CCcEEEEeccCCCEEE
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA-NS-------HGTYIAGGGQSGDIYM  106 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~dg~i~i  106 (451)
                      +...+.|+.  |+.....+.++..+ ..+.-|++.+........+.+.|....+ -+       ....|+.++.||.+.|
T Consensus        13 ~~e~vc~v~--w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   13 NSEKVCCVD--WSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             cceeEEeec--ccccceEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            334556777  88877776665554 5566666665554433333333322222 11       2246778899999999


Q ss_pred             EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      .+ +.++......+|.+.+.+-.|+|||.-|++++.||.|++|.-            ......++.....+|+|++|.|+
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr------------sGMLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR------------SGMLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec------------cchHHHHHhhcCceeEEEEECCC
Confidence            98 678888899999999999999999999999999999999985            23344455567789999999998


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          187 GVSATIVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      .. +.+++.+  +.+.|=-+... ++++--.|++-|.++.|+|..+.+++|+.|-..++||-...          .+...
T Consensus       157 S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----------~Lf~S  223 (737)
T KOG1524|consen  157 SN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----------NLFTS  223 (737)
T ss_pred             CC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----------ccccC
Confidence            74 4444443  45666555544 44444459999999999999999999999999999998763          45667


Q ss_pred             ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996          266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                      ..|..+|++++|+|...++.++.+ +++           --+...+.|..++||+||..++.|...|.+.+
T Consensus       224 ~~~ey~ITSva~npd~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  224 AAEEYAITSVAFNPEKDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             Chhccceeeeeeccccceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            789999999999996555555532 343           11234678999999999999999999888754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.5e-19  Score=164.54  Aligned_cols=318  Identities=14%  Similarity=0.156  Sum_probs=224.7

Q ss_pred             CCCeEEEECccCce-eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-----CceeeeecCCCCeeE
Q 012996           12 DTGIGCWDLESGAE-QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSLPAEPIKP   85 (451)
Q Consensus        12 dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-----~~~~~~~~~~~~v~~   85 (451)
                      +..+.+|+..++.. ......+..|.-.+.|.+  ++|.++++|++..| |.|.+|.--.     .......-|...|.+
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~--~spn~~~~Aa~d~d-GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVA--LSPNERYLAAGDSD-GRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             eeeEEEEEecccceeeccchhhhhhcccceeEE--eccccceEEEeccC-CcEEEEeccccccccccceEEEecccccce
Confidence            34688888876551 111222223444467888  99999999999998 9999997433     223333447889999


Q ss_pred             EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      ++|+++|.+|.+|+..|.+.+|.+.+++ ..-++.-.++|..+.++||+.+.+....|..|.+....+............
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~  335 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP  335 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence            9999999999999999999999999988 555677789999999999999999999999999998755332222111111


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------c------ccceeEEEECCCCCEE
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------F------PSVIDAIALDPAEHVF  233 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~------~~~i~~~~~~~~~~~l  233 (451)
                      .....-....+-.+.++++|..  +.++-.+..|.|.+||+.+.+.+..+.      .      .-.+++++.+-.|.++
T Consensus       336 ~~~~~k~~~~~l~t~~~idpr~--~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m  413 (792)
T KOG1963|consen  336 PTPSTKTRPQSLTTGVSIDPRT--NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM  413 (792)
T ss_pred             CCccccccccccceeEEEcCCC--CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence            1001112234455677788855  788888999999999999887776553      1      1246677777788888


Q ss_pred             EEEe--------CCC--cEEEEEccCCCCCCCCCCcee-eeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEEeCCC
Q 012996          234 YAGS--------RDG--SIYIAALNAESPSTSSYGMHI-IGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       234 ~~~~--------~dg--~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +++-        .||  .+++|-.......     +.. ......|...+...++.+   ...+++++.||.++||-+.+
T Consensus       414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt-----~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~  488 (792)
T KOG1963|consen  414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKT-----FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD  488 (792)
T ss_pred             EEeeeeehhhhccCceEEEEEEEEcCCcce-----eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence            8863        233  5778877654321     111 123345776666666655   34899999999999998732


Q ss_pred             ----------CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          300 ----------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       300 ----------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                                ..+...-..|..+++.++|+.||. +++.+.|++|.+||...
T Consensus       489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence                      223333335788999999999995 55567899999999887

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=6.3e-20  Score=154.21  Aligned_cols=213  Identities=14%  Similarity=0.212  Sum_probs=168.0

Q ss_pred             eeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          116 KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       116 ~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      -.+.+|.++|..++|+| +...|++||.|.+|.||.+......    .....++..+.+|...|--++|+|... +.|++
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLls  149 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----RDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLS  149 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----cCcccceEEEeecceeEEEEeecccch-hhHhh
Confidence            34579999999999999 7788999999999999999543221    122356778899999999999999876 89999


Q ss_pred             eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--ce
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AV  272 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v  272 (451)
                      ++.|.+|.+||+.+++.+.++.|+..|.+++|+.+|.+|++.+.|..|++||.+++.         .+..-.+|.+  +.
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---------~v~e~~~heG~k~~  220 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---------VVSEGVAHEGAKPA  220 (472)
T ss_pred             ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---------EeeecccccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999974         4444456654  34


Q ss_pred             eEEEEecCCEEEEEc---CCCcEEEEeCCCCc---eEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccccCCCC
Q 012996          273 TCLAYSTGDLLISGS---EDGMVRVWDPITHN---IVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       273 ~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~~~~~~  343 (451)
                      ..+....+.++.||-   ++..+-+||..+.+   .+.++.. .+.|.-=.|.+|...+ ++|-.|+.|+.|.+....
T Consensus       221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            444444377555553   47789999977643   2334443 3456666778888877 456689999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=7.7e-19  Score=158.46  Aligned_cols=264  Identities=13%  Similarity=0.121  Sum_probs=175.5

Q ss_pred             CccEEEEECCC-Ccee--eeecCCCCeeEEEECCCCcEEEEec-cCCCEEEEEcCC-Ccc--eeeeccccCCeeEEEEcc
Q 012996           60 SGSILYWSWSK-PQVE--VKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GRL--LKKWHAHYRAVTCLVFSE  132 (451)
Q Consensus        60 ~g~i~vw~~~~-~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~  132 (451)
                      ++.|.+|++.+ +...  ......+....++++|++++|++++ .++.|.+|++.. +..  +.... ..+....++|+|
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~   89 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH   89 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence            39999999963 3322  2223446788999999999987664 478899999863 332  22222 334567899999


Q ss_pred             CCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCCCc
Q 012996          133 DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGR  210 (451)
Q Consensus       133 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~  210 (451)
                      ++++|++++. ++.|.+|++.+...       ....+..+. +.....+++++|++  +++ ++...++.|.+||+.+..
T Consensus        90 ~g~~l~v~~~~~~~v~v~~~~~~g~-------~~~~~~~~~-~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         90 QGRFLFSASYNANCVSVSPLDKDGI-------PVAPIQIIE-GLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CCCEEEEEEcCCCeEEEEEECCCCC-------CCCceeecc-CCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCC
Confidence            9999888765 78999999853100       001122222 22345667888887  555 455567999999997633


Q ss_pred             eee-------eeecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeecc------CCcceeEEE
Q 012996          211 LLR-------NIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLA  276 (451)
Q Consensus       211 ~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~  276 (451)
                      .+.       ..........++|+|++++++++.. ++.|.+|++......     ...+..+..      +......+.
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEE
Confidence            221       1223455678999999999998876 899999999743110     122222211      112334688


Q ss_pred             Eec-CCEEEEEcC-CCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEecCceeeeccC-CCCccccccC
Q 012996          277 YST-GDLLISGSE-DGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRH  340 (451)
Q Consensus       277 ~~~-~~~l~s~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~-d~~i~iw~~~  340 (451)
                      ++| +++++++.. ++.|.+|++....    .+..+.. ......+.|+|+|++|+++.. ++.|.+|+++
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999 898888854 7899999986533    2222222 124568999999999987765 8999999875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=2.3e-20  Score=156.76  Aligned_cols=258  Identities=16%  Similarity=0.213  Sum_probs=186.4

Q ss_pred             eeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCC-------cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCc
Q 012996           75 VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGC  145 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~  145 (451)
                      ....|.++|..++|+| +...||+|+.|.+|.||.+..+       +.+..+.+|...|-.++|+| -.+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4456899999999999 6778999999999999998655       44667889999999999999 4578899999999


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cc-cceeE
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP-SVIDA  223 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~i~~  223 (451)
                      |.+|++.+           ...+.++. |...|+++.|+.+|  .++++++.|..|+|||.++++.+..-. |. .....
T Consensus       156 v~iWnv~t-----------geali~l~-hpd~i~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  156 VSIWNVGT-----------GEALITLD-HPDMVYSMSFNRDG--SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR  221 (472)
T ss_pred             EEEEeccC-----------CceeeecC-CCCeEEEEEeccCC--ceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence            99999966           33344455 99999999999999  899999999999999999999988764 43 34556


Q ss_pred             EEECCCCCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCC
Q 012996          224 IALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI  298 (451)
Q Consensus       224 ~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~  298 (451)
                      +.|-.++.++-+|.   .+..+-+||..+....      -....+. ..+.|.-=.|.+ .+ ..++|-.|+.|+.|.+.
T Consensus       222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP------~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEP------IALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             eEEeccCceeeeccccccccceeccCcccccCc------ceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            67778888665553   4678999998775411      1122332 334555555666 34 44566679999999987


Q ss_pred             CCce-EEEeec--CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcccccccccc
Q 012996          299 THNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSAD  356 (451)
Q Consensus       299 ~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~  356 (451)
                      ...+ ++.+..  ...+-..+.|-|.-  -+-.+.....++|+.... ...++.-++..+.
T Consensus       295 ~d~P~~hyln~f~S~epQRG~g~mPKR--Gl~Vs~cEI~rfyKl~~~-~~epIsm~VPRkS  352 (472)
T KOG0303|consen  295 NEPPFVHYLNTFSSKEPQRGMGFMPKR--GLDVSKCEIARFYKLHER-KCEPISMTVPRKS  352 (472)
T ss_pred             CCCceeEEecccccCCccccccccccc--cccchHHHHHHHHHhhcc-eeeeEEEeccccc
Confidence            6552 333322  24567778888743  233344456778887766 4444444444433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=3.8e-19  Score=155.96  Aligned_cols=352  Identities=12%  Similarity=0.117  Sum_probs=208.1

Q ss_pred             EEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc-----------CCCEEEEE
Q 012996           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-----------SGDIYMWE  108 (451)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd  108 (451)
                      +.+.  |||.|.||++-..  ..|.+|--.+-....+..| ..|.-+.|||+.+||++-+.           ...+.|||
T Consensus       214 tyv~--wSP~GTYL~t~Hk--~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVR--WSPKGTYLVTFHK--QGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEE--ecCCceEEEEEec--cceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            3445  9999999999988  5799998776666666666 46899999999999998643           25699999


Q ss_pred             cCCCcceeeeccc--cCCee-EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          109 VASGRLLKKWHAH--YRAVT-CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       109 ~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      +.+|...+.+...  ...++ -+.||.|++++|.-..| .|.||+..+.           .++..-.-.-..|....|+|
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-----------~lld~Kslki~gIr~FswsP  356 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-----------MLLDKKSLKISGIRDFSWSP  356 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-----------eeecccccCCccccCcccCC
Confidence            9999999888652  22333 36899999999987775 7899987431           11111111112233333333


Q ss_pred             cC---------------------------------------------CeeEEEEe----------eCCCcEEEEEcCCCc
Q 012996          186 GG---------------------------------------------VSATIVSA----------SEDRTCKVWSLLKGR  210 (451)
Q Consensus       186 ~~---------------------------------------------~~~~l~s~----------~~d~~i~iwd~~~~~  210 (451)
                      .+                                             .+.+|+.-          +.-..+.|+.++...
T Consensus       357 ~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd  436 (698)
T KOG2314|consen  357 TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD  436 (698)
T ss_pred             CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence            32                                             11222210          000112222222221


Q ss_pred             -eeeeeecccceeEEEECCCCCEEEEEeC---CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996          211 -LLRNIVFPSVIDAIALDPAEHVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (451)
Q Consensus       211 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s  285 (451)
                       ++........|...+|.|.|+.+++-+.   ..++.+|.+.+...     .+..+..+..  ...+.+.|+| |++++.
T Consensus       437 Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk--~~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  437 IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK--KFANTVFWSPKGRFVVV  509 (698)
T ss_pred             CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc--cccceEEEcCCCcEEEE
Confidence             1222334567888899999988877554   34788888774221     1233444432  5668899999 998887


Q ss_pred             E---cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC------CCCccccccCCCCCCCcccccccccc
Q 012996          286 G---SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQLPPPLDKYVTSAD  356 (451)
Q Consensus       286 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~~~~~~~  356 (451)
                      +   |..|.+.++|.....+..+-..-....+.+.|.|.|+|+++++.      |...++|++.|..+        ....
T Consensus       510 a~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll--------~~~~  581 (698)
T KOG2314|consen  510 AALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL--------KEDI  581 (698)
T ss_pred             EEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH--------HHHH
Confidence            6   45789999998753333222221235688999999999999874      45567777766432        2222


Q ss_pred             ccccceeEEecCCCCCCCCCCcccchhhHHHHHHHhhhcCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996          357 EDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAA------TEMEVERLKRECNRTLQMVQQWKKMYENLH  430 (451)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  430 (451)
                      .....+.+++++.+       +.++.+.+++..+.|++......      .-....+|.+..+++++...+.+.+..+.+
T Consensus       582 i~~f~qF~WRPRPp-------s~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElvekrRqlm~~f~~yR~~~~~~~  654 (698)
T KOG2314|consen  582 IDRFKQFLWRPRPP-------SLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVEKRRQLMEQFTEYREKIIEEM  654 (698)
T ss_pred             HHHHHhhccCCCCC-------cccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22223344555433       33444444444455543322111      111124455555555555555555544333

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=9.2e-21  Score=166.30  Aligned_cols=254  Identities=21%  Similarity=0.243  Sum_probs=190.2

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---------eeeeecCCCCeeEEEECCCCcEEEEeccCCCE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  104 (451)
                      +|..++..++  |.|....+++++.+ |++.+|++....         +.....|.++|.|+++.+++..+.+|+.||+|
T Consensus       292 s~~d~ir~l~--~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  292 SHDDCIRALA--FHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             cchhhhhhhh--cCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            5678888888  99999999999999 999999993211         12334589999999999999999999999999


Q ss_pred             EEEEcCCC----------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996          105 YMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus       105 ~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      +.|++...          .....+.+|.+.|+.+++|+....|++++.||+++.|+....          ..+.......
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~----------~~~~f~~~~e  438 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE----------SPCTFGEPKE  438 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc----------CccccCCccc
Confidence            99966421          234567899999999999998888999999999999998441          1111111111


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------cccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGSRDGSIYIAA  246 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  246 (451)
                      .+.-.++.+..... ...++...-+.-.++++.....+..+.        ....+..+.++|.+.+.+++..|+.|+++|
T Consensus       439 ~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD  517 (577)
T ss_pred             cCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence            22223444332211 223333333333444444444444333        124577889999999999999999999999


Q ss_pred             ccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996          247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                      ..++         .++.....|...++++++.| |.+|++++.||.+++|.+....++.....|.
T Consensus       518 n~~~---------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  518 NKTG---------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cccc---------ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            9987         55777888999999999999 9999999999999999998888888777664

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=1.5e-19  Score=145.83  Aligned_cols=273  Identities=16%  Similarity=0.217  Sum_probs=193.3

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC----C---ccEEEEECCCCcee---------
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----S---GSILYWSWSKPQVE---------   74 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~---g~i~vw~~~~~~~~---------   74 (451)
                      .|+.|.+-+++.+.....-+....+.+.|..++  -+|..+.+++....    .   ..+.||.+..+...         
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v  115 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV  115 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence            356677777665443322334444667777777  77766655443321    1   35789998644322         


Q ss_pred             --eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-eeee-----ccccCCeeEEEEcc--CCcEEEEeeCCC
Q 012996           75 --VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSE--DGSFLISGSEDG  144 (451)
Q Consensus        75 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~~l~s~~~dg  144 (451)
                        ....+-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+     ..|....++-+|+|  +++.+++. .|+
T Consensus       116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~  193 (370)
T KOG1007|consen  116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDS  193 (370)
T ss_pred             hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCC
Confidence              1111345899999999999998855 78999999987765 3333     23566788889998  77777765 478


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-ccccee
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVID  222 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~  222 (451)
                      ++..||+++...          ....-..|...|.++.|+|+.. .+|++|+.||.|+|||.+.. .++..+. |...+.
T Consensus       194 tl~~~D~RT~~~----------~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW  262 (370)
T KOG1007|consen  194 TLQFWDLRTMKK----------NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW  262 (370)
T ss_pred             cEEEEEccchhh----------hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence            999999987321          2223356888899999999875 78999999999999999864 4556665 788999


Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEEccCCCCC--------------------CCCCCceeeeeeccCCcceeEEEEec-C
Q 012996          223 AIALDP-AEHVFYAGSRDGSIYIAALNAESPS--------------------TSSYGMHIIGSLSDHSKAVTCLAYST-G  280 (451)
Q Consensus       223 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~~~-~  280 (451)
                      ++.|+| ...++++|+.|..|.+|....-...                    ..+.....+.++..|...|++++||. .
T Consensus       263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad  342 (370)
T KOG1007|consen  263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD  342 (370)
T ss_pred             EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence            999999 5677889999999999976543210                    00111233557888999999999999 4


Q ss_pred             -CEEEEEcCCCcEEEEeCC
Q 012996          281 -DLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       281 -~~l~s~~~dg~i~iwd~~  298 (451)
                       =.||+-+.||.+.|=.+.
T Consensus       343 PWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  343 PWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             CeeEEEeccCceEEeecCC
Confidence             467778999999887764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.3e-19  Score=141.29  Aligned_cols=251  Identities=18%  Similarity=0.211  Sum_probs=183.5

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCC----------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      .|.+-+++|.+++|++|..+|.|.+..+++.          ..+...++|.++|..++|+  ..+|++|+. |.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence            4666789999999999999999999988542          2334558999999999998  457777765 99999988


Q ss_pred             cchhhhhh--hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC
Q 012996          152 LTVFEECE--SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP  228 (451)
Q Consensus       152 ~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~  228 (451)
                      +...+...  .......+.+.-...-..|+++-..|..  +-++.++.|+.++-||+++|+..+.+. |...+.++.-..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            65433111  0001111111111123457788787776  567777799999999999999999998 889999999877


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      ....+++|+.||++++||+++.+........+....++.| ...|-+++.+ .++|++|+ .-.+.+|.+++.++...|.
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEecC-CCceeEEeccCCCceEEEe
Confidence            7788999999999999999998653322222222223333 3457777766 68888776 4569999999999988887


Q ss_pred             cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      . .+++..+.|..|  .+++++.-+.+.-|...+.
T Consensus       245 i-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  245 I-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             c-ccceeEeeeecc--eEEEeccccceeeeeeccE
Confidence            5 577888888765  6777777888888887764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1.2e-19  Score=146.61  Aligned_cols=273  Identities=14%  Similarity=0.186  Sum_probs=198.5

Q ss_pred             CCCceEEecceEe--ec-cCcccCCCCC---CccEEEEECC--CCceeee--ecCCCCeeEEEECCCCc-----EEEEec
Q 012996           35 PPHGLACVGQRFL--AS-SQLREQPSAS---SGSILYWSWS--KPQVEVK--SLPAEPIKPIAANSHGT-----YIAGGG   99 (451)
Q Consensus        35 ~~~~v~~~~~~~~--~~-~~~l~~~~~d---~g~i~vw~~~--~~~~~~~--~~~~~~v~~~~~~~~~~-----~l~~~~   99 (451)
                      .+-.+.+++  |+  ++ .-++|.|+..   .+.|.|-.++  +++....  ..|.-+++.+.|.|+..     +||+.+
T Consensus        43 ap~~lya~~--Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~  120 (364)
T KOG0290|consen   43 APWPLYAMN--WSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS  120 (364)
T ss_pred             CCCceeeec--cccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc
Confidence            345567777  76  22 3445665532   2566666554  3333333  35778999999999763     466543


Q ss_pred             cCCCEEEEEcCCCcc----eeee-----ccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996          100 QSGDIYMWEVASGRL----LKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (451)
Q Consensus       100 ~dg~i~iwd~~~~~~----~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  169 (451)
                       | .+++|.+...+.    ...+     ..+..++++..|+. +.+++.+++-|-+..|||++++        .......
T Consensus       121 -D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~--------~~~~vkT  190 (364)
T KOG0290|consen  121 -D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--------VSGTVKT  190 (364)
T ss_pred             -C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec--------cccceee
Confidence             3 799999874211    1111     23567899999987 7889999999999999999763        1222344


Q ss_pred             cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECC-CCCEEEEEeCC-CcEE
Q 012996          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDP-AEHVFYAGSRD-GSIY  243 (451)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~d-g~i~  243 (451)
                      .+-.|...|.+++|..++. ..+++.+.||.|++||++..+....+.    ...+...++|++ +-+++++-..| ..|.
T Consensus       191 QLIAHDKEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~  269 (364)
T KOG0290|consen  191 QLIAHDKEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV  269 (364)
T ss_pred             EEEecCcceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence            5678999999999998654 799999999999999999876544443    245678899988 55677765544 5799


Q ss_pred             EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce------EEEeecCCCCeeE
Q 012996          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI------VRMFRLAKGPVNN  315 (451)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~  315 (451)
                      +.|++...        .++..+++|.+.|+.++|.|  ...|.+++.|..+.+||+...-.      +-.+. ..+.|..
T Consensus       270 iLDiR~P~--------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNq  340 (364)
T KOG0290|consen  270 ILDIRVPC--------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQ  340 (364)
T ss_pred             EEEecCCC--------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeee
Confidence            99999875        77889999999999999999  88999999999999999875322      22222 3568999


Q ss_pred             EEEEe-cCceeeecc
Q 012996          316 ILVVR-RPLYLNLGS  329 (451)
Q Consensus       316 l~~s~-~~~~l~~~s  329 (451)
                      +.|++ .+..++.+.
T Consensus       341 i~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  341 IQWSSSQPDWIAICF  355 (364)
T ss_pred             eeecccCCCEEEEEe
Confidence            99996 556676654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=3e-18  Score=154.61  Aligned_cols=273  Identities=12%  Similarity=0.156  Sum_probs=176.0

Q ss_pred             EeecCCCCCCeEEEECcc-Cc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC-CCceeee--ec
Q 012996            5 IASSSVADTGIGCWDLES-GA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVK--SL   78 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~-~~~~~~~--~~   78 (451)
                      .++.. .++.|.+||+.+ |+  .+..+.. .   .....+.  ++|++++|++++..++.|.+|+++ ++.....  ..
T Consensus         5 y~~~~-~~~~I~~~~~~~~g~l~~~~~~~~-~---~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~   77 (330)
T PRK11028          5 YIASP-ESQQIHVWNLNHEGALTLLQVVDV-P---GQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP   77 (330)
T ss_pred             EEEcC-CCCCEEEEEECCCCceeeeeEEec-C---CCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec
Confidence            33445 689999999964 33  3344432 1   2334455  999999998776655999999987 3333222  22


Q ss_pred             CCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCC-Cc---ceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCc
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GR---LLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLL  152 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~  152 (451)
                      .......++|+|+++++++++. ++.|.+|++.+ +.   .+..+. +.....+++++|+++++++++ .++.|.+||+.
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            3446778999999998887764 78899999964 32   222222 234567889999998886554 56899999996


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCC--Cc--eeeeee-cc------cc
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLK--GR--LLRNIV-FP------SV  220 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~-~~------~~  220 (451)
                      +.....    .......... .......++|+|++  +++++++. ++.|.+|++..  ++  .+..+. .+      ..
T Consensus       157 ~~g~l~----~~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~  229 (330)
T PRK11028        157 DDGHLV----AQEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW  229 (330)
T ss_pred             CCCccc----ccCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence            411000    0000000111 12335678999988  77777665 89999999973  32  233332 11      12


Q ss_pred             eeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-CCcEEEEeC
Q 012996          221 IDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGMVRVWDP  297 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~  297 (451)
                      ...+.++|++++++++.. ++.|.+|++......     ...+..... ......+.++| +++|+++.. +++|.+|++
T Consensus       230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            336889999999999864 689999999654211     122222221 13456789999 888888775 899999987


Q ss_pred             C
Q 012996          298 I  298 (451)
Q Consensus       298 ~  298 (451)
                      .
T Consensus       304 ~  304 (330)
T PRK11028        304 D  304 (330)
T ss_pred             c
Confidence            4

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=3.8e-19  Score=163.88  Aligned_cols=270  Identities=20%  Similarity=0.247  Sum_probs=196.4

Q ss_pred             CCCeEEEECccC-ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-------eeecCCCCe
Q 012996           12 DTGIGCWDLESG-AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPI   83 (451)
Q Consensus        12 dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-------~~~~~~~~v   83 (451)
                      ++.+.||++... .+...+.    ....|.|+.  |+|....+++||..+|.|.+||+..+...       ....|.++|
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~----~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE----SPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             CceEEEEecCCCCCceEEEe----cCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            457999999865 3333332    456788888  99988888888887799999999866542       223478899


Q ss_pred             eEEEECCCC--cEEEEeccCCCEEEEEcCCCcce------eeec------cccCCeeEEEEcc-CCcEEEEeeCCCcEEE
Q 012996           84 KPIAANSHG--TYIAGGGQSGDIYMWEVASGRLL------KKWH------AHYRAVTCLVFSE-DGSFLISGSEDGCVRI  148 (451)
Q Consensus        84 ~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v  148 (451)
                      +.+.|..+-  .-+++++.||.|..|+++.-...      ....      .....+++++|.+ +...|+.|+.+|.|.-
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            999996643  44899999999999988644321      1111      1234678999988 6678999999999877


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeee-cccceeEEEE
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDAIAL  226 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~i~~~~~  226 (451)
                      -+-........   ........+..|.++|+++.++|-.. ..+++++ |.+++||.-. ...++..+. ....+++++|
T Consensus       375 ~~r~g~~~~~~---~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  375 GCRKGYTPAPE---VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             EeccCCccccc---ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence            33322111000   11223446677999999999998874 3444444 9999999977 555665555 5566999999


Q ss_pred             CCC-CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      ||. ...|+++..+|.|.+||+.....       .++....-+....+.+.|++ +..|++|...|++.+|++..
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhcccc-------CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            995 56788888899999999987653       44445555567788899999 99999999999999999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2e-19  Score=168.78  Aligned_cols=275  Identities=16%  Similarity=0.248  Sum_probs=196.0

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeec----CCCCeeEEEECC--CCcEEEEeccCCCEEEEEcCCC-----cc
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL----PAEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASG-----RL  114 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~----~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~-----~~  114 (451)
                      |+|-...++++... ..|+|||++.+.......    ....|+.+.+-.  |..++++|+.||.|+||+-...     ++
T Consensus      1072 ~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred             ecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCcee
Confidence            77778888888765 799999999887643322    356899998854  5678999999999999974322     23


Q ss_pred             eeeec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc-cCCcCceeEEEEeec
Q 012996          115 LKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYG  186 (451)
Q Consensus       115 ~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~  186 (451)
                      +..+.       +..+.=.-+.|.....+|+++|.-..|+|||...           ...+..+ .+....|+++.-...
T Consensus      1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-----------E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK-----------EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc-----------ceeEeecccCCCccceeeccccc
Confidence            32222       1222224567877666677777778999999954           2222222 234455666654433


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCce---eeeee-cccc--eeEEEECCCCCE-EEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRL---LRNIV-FPSV--IDAIALDPAEHV-FYAGSRDGSIYIAALNAESPSTSSYGM  259 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (451)
                      . ++.+++|..||.|++||.+....   +.... |...  |..+.+.+.|-. |++|+.+|.|++||++....       
T Consensus      1220 ~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~------- 1291 (1387)
T KOG1517|consen 1220 H-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK------- 1291 (1387)
T ss_pred             C-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-------
Confidence            3 38999999999999999886543   22222 5544  899999886654 99999999999999998521       


Q ss_pred             eeeeeeccCC---cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-------CCCeeEEEEEecCceeeec
Q 012996          260 HIIGSLSDHS---KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-------KGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       260 ~~~~~~~~~~---~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~  328 (451)
                      ....+...|.   +.++++..++ ...+|+|+. +.|+||++. |+.+..++.+       .+++.+++|+|.-..||+|
T Consensus      1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            1111222222   3599999999 999999998 999999965 5555555433       3478999999999999999


Q ss_pred             cCCCCccccccCCC
Q 012996          329 SFSNPHTSSRRHGS  342 (451)
Q Consensus       329 s~d~~i~iw~~~~~  342 (451)
                      +.|.+|.||.....
T Consensus      1370 ~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCCceEEEeecCCc
Confidence            99999999987654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=5.5e-21  Score=174.83  Aligned_cols=238  Identities=20%  Similarity=0.335  Sum_probs=189.9

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      .|..+|+|..|...|.++++|+.|..++||...++.++....+|.+.|+.++.+.+..++++++.|..|++|.+      
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl------  261 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL------  261 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec------
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee-----eeecccceeEEEECCCCCE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-----NIVFPSVIDAIALDPAEHV  232 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~  232 (451)
                           ....++..+.+|++.|++++|+|-.      +.+.||++++||.+-...+.     .+.....+.++.|...+..
T Consensus       262 -----~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~  330 (1113)
T KOG0644|consen  262 -----PDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR  330 (1113)
T ss_pred             -----CCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence                 4566788899999999999998853      77899999999987111111     1112233444444444444


Q ss_pred             EEEEeCCCc-------------------------------------EEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996          233 FYAGSRDGS-------------------------------------IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (451)
Q Consensus       233 l~~~~~dg~-------------------------------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  275 (451)
                      +++|+.|+.                                     +.+|++.++         .....+.+|...+..+
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvL  401 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDEVYVL  401 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccccceeee
Confidence            444444443                                     334444433         4455677899999999


Q ss_pred             EEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          276 AYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       276 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .++|  .....+++.||...|||+..|.+++......+.+..-.||+||..++....-|.+.|.....
T Consensus       402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCC
Confidence            9999  56777889999999999999988887665567788899999999999988888888887643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.8e-19  Score=155.72  Aligned_cols=213  Identities=12%  Similarity=0.212  Sum_probs=158.2

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECC--CCcEEEEeccCCCEEEEE
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd  108 (451)
                      .+|.++|.|+.  |+.+|.+|++|+.| -.+.|||.-..+..  +...|...|.++.|-|  +.+.+++|..|..|+++|
T Consensus        47 ~GH~GCVN~Le--Wn~dG~lL~SGSDD-~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   47 TGHTGCVNCLE--WNADGELLASGSDD-TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             ccccceeccee--ecCCCCEEeecCCc-ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            46778899999  99999999999988 99999998754443  4567899999999998  567899999999999999


Q ss_pred             cCCC----------cceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996          109 VASG----------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (451)
Q Consensus       109 ~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (451)
                      +.+.          +....+..|...|..|+-.|++ ..+.+++.||+|+-+|++......... .-...+..+...-..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~-~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE-DCPSILVNYNPQLIE  202 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc-cccHHHHHhchhhhe
Confidence            9742          3445667899999999999987 789999999999999997632211111 011112222233345


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--------c----------eeeeee--c-----------ccceeEEEE
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------R----------LLRNIV--F-----------PSVIDAIAL  226 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~----------~~~~~~--~-----------~~~i~~~~~  226 (451)
                      ..++.++|... .+|++|+.|-..++||.+..        .          ++..+.  |           ...++-+.|
T Consensus       203 lk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  203 LKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            67888888765 79999999999999995321        1          111121  0           112566789


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCC
Q 012996          227 DPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      +|+|.-|++.-..-.|+++|+...
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCC
Confidence            999999888877778999887553

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.1e-17  Score=132.02  Aligned_cols=264  Identities=15%  Similarity=0.225  Sum_probs=180.7

Q ss_pred             EEEeecCCCCCCeEEEECccC---------c-eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc
Q 012996            3 LLIASSSVADTGIGCWDLESG---------A-EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ   72 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~---------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~   72 (451)
                      -+|++|+ .+|.|.+..+.+.         + .+...++   |...+..+.  |.  ..+|++++.  |.|+-|.++...
T Consensus        23 ~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~--f~--d~~Lls~gd--G~V~gw~W~E~~   92 (325)
T KOG0649|consen   23 QYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLA--FH--DDFLLSGGD--GLVYGWEWNEEE   92 (325)
T ss_pred             eEEEEec-CCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeee--ee--hhheeeccC--ceEEEeeehhhh
Confidence            3688898 9999999987532         1 2223344   445566666  65  456666654  999999986432


Q ss_pred             ee--------eee------cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996           73 VE--------VKS------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI  138 (451)
Q Consensus        73 ~~--------~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (451)
                      ..        ...      ..--.|+++-..|..+-++.++.|+.++-||+++|+..+++++|.+.|.++.--.....++
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil  172 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL  172 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence            20        010      1123689999999777777777899999999999999999999999999998855556799


Q ss_pred             EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec
Q 012996          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF  217 (451)
Q Consensus       139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  217 (451)
                      +|+.||++++||.++...........  ....+..|- ..|-+++.+.    .++++|+ ...+.+|.+++.++...+..
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~ie~yk--~~~~lRp~~g~wigala~~e----dWlvCGg-Gp~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSMIEPYK--NPNLLRPDWGKWIGALAVNE----DWLVCGG-GPKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             ecCCCccEEEEeccccceeEEecccc--ChhhcCcccCceeEEEeccC----ceEEecC-CCceeEEeccCCCceEEEec
Confidence            99999999999998743322211111  111223333 3355555433    5777665 45699999999999999999


Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEE
Q 012996          218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVW  295 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iw  295 (451)
                      +..+..+.|.  .+.+++++..+.+.-|.+...          ............++..|+.  -++|-.++....+.|+
T Consensus       246 pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv----------l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  246 PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV----------LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ccceeEeeee--cceEEEeccccceeeeeeccE----------EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            9999999984  557788888888999988763          2223333334455555544  4555566666666665

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=4.7e-18  Score=142.03  Aligned_cols=234  Identities=15%  Similarity=0.193  Sum_probs=176.2

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC--CcEEEeeCcchhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED--GCVRIWSLLTVFEEC  158 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~  158 (451)
                      ..+..+.|+.+...|..|+.|| .++|.................|.-+-|+  ..+++..+.+  ..+++++.+.     
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk-----   77 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK-----   77 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc-----
Confidence            4567777999999999999987 6788876655433333334456666777  4466655544  3488888843     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECCCCCEEE
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~  234 (451)
                            ...+..+. ...+|.++.+...    .|+++=.+ .|+|||+++.+++.++.    ++..+.++++++.+.+++
T Consensus        78 ------~~~ICe~~-fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA  145 (391)
T KOG2110|consen   78 ------KTTICEIF-FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA  145 (391)
T ss_pred             ------CceEEEEe-cCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence                  22222222 3557888888664    44444443 39999999999999887    233455555666667887


Q ss_pred             EE--eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc-EEEEeCCCCceEEEeecCC
Q 012996          235 AG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       235 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~  310 (451)
                      .-  ...|.|.+||..+-         +++..+..|.+++.+++|++ |.+|||+|..|+ |||+.+.+|+.+.+|+...
T Consensus       146 yp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~  216 (391)
T KOG2110|consen  146 YPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT  216 (391)
T ss_pred             ecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence            64  35789999999886         66778889999999999999 999999999998 8999999999999998543


Q ss_pred             --CCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          311 --GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       311 --~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                        ..|.+|+|+|++++|++.|..++|.++++....
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence              368999999999999999999999999988654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=2.3e-18  Score=139.19  Aligned_cols=239  Identities=15%  Similarity=0.206  Sum_probs=174.2

Q ss_pred             CCCCCceEEecceEeeccC-----cccCCCCCCccEEEEECCCCc--eee--------eecCCCCeeEEEECC-CCcEEE
Q 012996           33 ASPPHGLACVGQRFLASSQ-----LREQPSASSGSILYWSWSKPQ--VEV--------KSLPAEPIKPIAANS-HGTYIA   96 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~-----~l~~~~~d~g~i~vw~~~~~~--~~~--------~~~~~~~v~~~~~~~-~~~~l~   96 (451)
                      ..|+..++-+.  |.|+..     +||+++   ..+++|.+....  ...        ...+..++++..|+. +-+++.
T Consensus        93 fd~~YP~tK~~--wiPd~~g~~pdlLATs~---D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ig  167 (364)
T KOG0290|consen   93 FDHPYPVTKLM--WIPDSKGVYPDLLATSS---DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIG  167 (364)
T ss_pred             CCCCCCccceE--ecCCccccCcchhhccc---CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeE
Confidence            35667777777  888763     455544   489999987422  211        122467999999987 778899


Q ss_pred             EeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996           97 GGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT  172 (451)
Q Consensus        97 ~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  172 (451)
                      +.+-|-+..|||++++.   ....+-+|..+|..++|...+ +.|++.|.||.+++||++..        .....+..-.
T Consensus       168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l--------eHSTIIYE~p  239 (364)
T KOG0290|consen  168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL--------EHSTIIYEDP  239 (364)
T ss_pred             eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc--------ccceEEecCC
Confidence            99999999999999873   356678999999999999844 57899999999999999763        2222333333


Q ss_pred             CCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCC-ceeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 012996          173 GHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       173 ~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  248 (451)
                      ....+...++|++... +++++-..| ..|.|.|++.. .++..+. |.+.|+.++|.| ....+++++.|..+.+||+.
T Consensus       240 ~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             CCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence            3355677788877654 677776654 56999999865 4555555 899999999999 56789999999999999998


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCC
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSED  289 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~d  289 (451)
                      ..... .  ...++..+. -.+.|+.+.|++  +++++.+...
T Consensus       319 q~~~~-~--~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  319 QMPRE-N--GEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             ccccc-C--CCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            75321 0  112222333 467899999998  8888887644

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=156.09  Aligned_cols=299  Identities=15%  Similarity=0.160  Sum_probs=222.3

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCCCCeeEEEECC--CCcEEEEeccCCCEEEEE
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd  108 (451)
                      ..|.++|..+.  |...|..+++++.| ..|.+||+........  ..|...|..-.|-|  +.+.+++++.||.+++=.
T Consensus       139 ~~H~GcVntV~--FN~~Gd~l~SgSDD-~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  139 NKHKGCVNTVH--FNQRGDVLASGSDD-LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             cCCCCccceee--ecccCceeeccCcc-ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            35666677777  99999999999988 9999999987766544  45777787777877  456789999999999877


Q ss_pred             cCCC-cc--eeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC---ceeEE
Q 012996          109 VASG-RL--LKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDI  181 (451)
Q Consensus       109 ~~~~-~~--~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i  181 (451)
                      +... .+  ...+..|.++|.-++.-|+. .-|.+++.|+.+.-+|++.....        ..+..-..+..   ...++
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--------~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--------EKFVCREADEKERVGLYTI  287 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc--------ceeeeeccCCccceeeeeE
Confidence            6433 22  23456799999999999954 56899999999999999763221        11112222222   56777


Q ss_pred             EEeecCCeeEEEEeeCCCcEEEEEcCCCce------eeee-------ecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRL------LRNI-------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (451)
                      +..|... ..+++++.|..+++||.+.-..      +..+       ..+..|++++|+.++.-|.++..|-.|+++.-.
T Consensus       288 a~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  288 AVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             ecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence            8877654 6899999999999999875321      1222       135679999999888888888999999999544


Q ss_pred             CCCCCCC---C-CCceeeeeeccCCc--ceeEEEE-ec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          249 AESPSTS---S-YGMHIIGSLSDHSK--AVTCLAY-ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       249 ~~~~~~~---~-~~~~~~~~~~~~~~--~v~~~~~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      .+.....   . ........+++|..  .|..+-| -| ..|+++|+.-|.|.||+-.+++.++.+.+-..-|+||.-+|
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence            3321110   0 00111223778864  4666655 45 88999999999999999999999999988777999999999


Q ss_pred             cCceeeeccCCCCccccccCCCC
Q 012996          321 RPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       321 ~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      .-..||+++-|.-|+||...+..
T Consensus       447 ~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  447 HLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             CCchhhccCCccceeeecCCccc
Confidence            99999999999999999975443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.83  E-value=1.6e-18  Score=142.63  Aligned_cols=291  Identities=12%  Similarity=0.141  Sum_probs=207.6

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      ..|.... .|+.|.+|++...+--..+..   .+.++....  |||+|+.++..+.-+-.|.||.+.+........+...
T Consensus        62 ~ilC~~y-k~~~vqvwsl~Qpew~ckIde---g~agls~~~--WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~  135 (447)
T KOG4497|consen   62 HILCVAY-KDPKVQVWSLVQPEWYCKIDE---GQAGLSSIS--WSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN  135 (447)
T ss_pred             eeeeeee-ccceEEEEEeecceeEEEecc---CCCcceeee--ECCCcceEeeeecceeEEEEEEeccceeEEecccccC
Confidence            3456666 899999999988777766654   446677777  9999988777776669999999999888887777888


Q ss_pred             eeEEEECCCCcEEEEeccCCC---EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGD---IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      +..++|+|||++.+..+.-..   +.|.......+++.+.-..-..+.+.|+|||+.|++         ||---      
T Consensus       136 ~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~L------  200 (447)
T KOG4497|consen  136 VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVL------  200 (447)
T ss_pred             ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchh------
Confidence            999999999999988765322   333333344566667666777889999999987664         44300      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------------------
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------  216 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------  216 (451)
                           ...+. .......+..+.|+|.+  ++++.|+.|+.+++.+--+-++...+-                       
T Consensus       201 -----eykv~-aYe~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql  272 (447)
T KOG4497|consen  201 -----EYKVY-AYERGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL  272 (447)
T ss_pred             -----hheee-eeeeccceeEEEecccc--ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence                 00000 11123467788899987  899999999999886532221111110                       


Q ss_pred             --------------------------------------------cccceeEEEECCCCCEEEEEeCC--CcEEEEEccCC
Q 012996          217 --------------------------------------------FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAE  250 (451)
Q Consensus       217 --------------------------------------------~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~  250 (451)
                                                                  ..-.+.-++|++|..++++-.+.  +.+.+||++..
T Consensus       273 ~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l  352 (447)
T KOG4497|consen  273 LHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL  352 (447)
T ss_pred             cccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh
Confidence                                                        01146678999999999886543  57999999885


Q ss_pred             CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      +          +...-....+|....|.| ...|+.+.....+++|...-...+.. ....-.|..+.|..+|.+++..+
T Consensus       353 ~----------l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~  421 (447)
T KOG4497|consen  353 K----------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCG  421 (447)
T ss_pred             h----------hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEc
Confidence            3          333334567999999999 66777777777899999765444443 33335899999999999999988


Q ss_pred             CCCC
Q 012996          330 FSNP  333 (451)
Q Consensus       330 ~d~~  333 (451)
                      .|..
T Consensus       422 kDaf  425 (447)
T KOG4497|consen  422 KDAF  425 (447)
T ss_pred             CCce
Confidence            8764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=1.4e-18  Score=146.80  Aligned_cols=286  Identities=17%  Similarity=0.226  Sum_probs=192.8

Q ss_pred             EEEeecCCCCCCeEEEECccCc------eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC-------
Q 012996            3 LLIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-------   69 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~-------   69 (451)
                      +.||||+ .|..|++|-+..+.      .+.-+.....|...|.++.  |+|+|..||+++.+ |.|.+|...       
T Consensus        27 ~~laT~G-~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR--f~p~gelLASg~D~-g~v~lWk~~~~~~~~~  102 (434)
T KOG1009|consen   27 NKLATAG-GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR--FSPDGELLASGGDG-GEVFLWKQGDVRIFDA  102 (434)
T ss_pred             cceeccc-CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE--EcCCcCeeeecCCC-ceEEEEEecCcCCccc
Confidence            3789999 99999999876443      3333344556778888888  99999999999998 999999865       


Q ss_pred             -C-----C-ce---eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEE
Q 012996           70 -K-----P-QV---EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS  139 (451)
Q Consensus        70 -~-----~-~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  139 (451)
                       +     . ..   .....|.+.|..++|+|++.++++|+.|..+++||+..|..+..+..|...|..++|.|-++++++
T Consensus       103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s  182 (434)
T KOG1009|consen  103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS  182 (434)
T ss_pred             cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence             2     1 11   122347889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEEeeCcchhhhhhh----------hcccccceecccC--CcCceeEEEEeecCCeeEEEEeeC----CC----
Q 012996          140 GSEDGCVRIWSLLTVFEECES----------QRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASE----DR----  199 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~~~----d~----  199 (451)
                      -+.|...+.+.+.........          ........+.+..  -..-...++|+|+|  .++++.+.    ++    
T Consensus       183 ~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG--~llvtPag~~~~g~~~~~  260 (434)
T KOG1009|consen  183 KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG--SLLVTPAGLFKVGGGVFR  260 (434)
T ss_pred             hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC--cEEEcccceeeeCCceee
Confidence            999986666665321100000          0000001111111  01122345677777  67765432    22    


Q ss_pred             -cEEEEEcCC-Cceeeeee-cccceeEEEEC------------------CCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996          200 -TCKVWSLLK-GRLLRNIV-FPSVIDAIALD------------------PAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (451)
Q Consensus       200 -~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (451)
                       +.++|+-.. .++...++ ...+...+.++                  |.+..+++++ ...+++||.....+      
T Consensus       261 n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P------  333 (434)
T KOG1009|consen  261 NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEP------  333 (434)
T ss_pred             ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccc------
Confidence             234443221 12222222 12223333333                  2333455555 46799999988642      


Q ss_pred             ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                        ....-.-|-..|+.++|++ |.+|+..|.||...+--+...++-
T Consensus       334 --~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  334 --LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             --eEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence              2223344888999999999 999999999999888777665544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.3e-18  Score=158.13  Aligned_cols=337  Identities=15%  Similarity=0.121  Sum_probs=224.0

Q ss_pred             eEEEeecCCCCCCeEEEECcc-CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC
Q 012996            2 ELLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~   80 (451)
                      |.++|+|. .||.|.+|.--. ...-.+.....=|...|.+++  |+++|.+|.+||.. |.+.+|...++...+...-.
T Consensus       217 ~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~LlSGG~E-~VLv~Wq~~T~~kqfLPRLg  292 (792)
T KOG1963|consen  217 ERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAYLLSGGRE-GVLVLWQLETGKKQFLPRLG  292 (792)
T ss_pred             cceEEEec-cCCcEEEEeccccccccccceEEEecccccceeE--EecCCceEeecccc-eEEEEEeecCCCcccccccC
Confidence            57899999 999999997432 122222223334667899999  99999999999999 99999999999977777788


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc-----------ccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-----------HYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      .+|..+.++||+.+.++...|..|.+....+.+...++.+           ..+-.+.++++|..+.++-.+..|.|.+|
T Consensus       293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y  372 (792)
T KOG1963|consen  293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY  372 (792)
T ss_pred             CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence            9999999999999999999999999998866654444322           24456788999966778888899999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--------C--CcEEEEEcCCCc----eeeee
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------D--RTCKVWSLLKGR----LLRNI  215 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~--------d--~~i~iwd~~~~~----~~~~~  215 (451)
                      |+.+.................-..+...++.++.+..+  .+++|.-.        |  -.+++|-.....    +...+
T Consensus       373 dl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g--s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I  450 (792)
T KOG1963|consen  373 DLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG--SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI  450 (792)
T ss_pred             eccccceeeeEEEEeecccCCcceeEEeeeeehhhccc--eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence            99663222111100000000001234456666666665  78887542        3  357788765443    22333


Q ss_pred             e--cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996          216 V--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (451)
Q Consensus       216 ~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg  290 (451)
                      .  |...+.+.++.+  ....+++++.||.+++|-+...+.... ...+.+...-.-|..++++++|+...-+++.+.|+
T Consensus       451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD  530 (792)
T ss_pred             ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence            3  555555555544  333789999999999999955432222 22334443334589999999999933566667899


Q ss_pred             cEEEEeCCC-CceEEEeecCCCCeeEEEEEecCc--eeeeccCCCCccccccCCCCC
Q 012996          291 MVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPL--YLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       291 ~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      +|.+||..+ ..+..+...-..++..+.|.....  ..+.....+.+.+|++-...+
T Consensus       531 ~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l  587 (792)
T KOG1963|consen  531 TITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL  587 (792)
T ss_pred             EEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence            999999998 444444444344555555543221  223333456677787665544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.82  E-value=2.6e-17  Score=147.87  Aligned_cols=322  Identities=12%  Similarity=0.092  Sum_probs=202.5

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~   81 (451)
                      ++++++-. .+|.|.|.|..+.+.+.++......   -..+.  |+|||+++.+++.| |.|.++|+.+.+.........
T Consensus         6 ~l~~V~~~-~~~~v~viD~~t~~~~~~i~~~~~~---h~~~~--~s~Dgr~~yv~~rd-g~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen    6 NLFYVVER-GSGSVAVIDGATNKVVARIPTGGAP---HAGLK--FSPDGRYLYVANRD-GTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GEEEEEEG-GGTEEEEEETTT-SEEEEEE-STTE---EEEEE---TT-SSEEEEEETT-SEEEEEETTSSSEEEEEE-SS
T ss_pred             cEEEEEec-CCCEEEEEECCCCeEEEEEcCCCCc---eeEEE--ecCCCCEEEEEcCC-CeEEEEECCcccEEEEEecCC
Confidence            35666777 7999999999999999999764321   22344  89999999999887 999999999999877776677


Q ss_pred             CeeEEEECCCCcEEEEec-cCCCEEEEEcCCCcceeeeccc-------cCCeeEEEEccCCcEEEEeeC-CCcEEEeeCc
Q 012996           82 PIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE-DGCVRIWSLL  152 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~  152 (451)
                      ....+++++||+++++++ ..+.+.++|.++.+.+..+...       ...+..+..+|....++..-. .+.|-+.|..
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            889999999999998875 5789999999999998877533       346778888888775655544 4778777874


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCCceeeeee-----cccceeEEEE
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIAL  226 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~  226 (451)
                      ..         .. .............+..|.+++  ++++. ...+..|.++|..+++....+.     ++.....+ .
T Consensus       159 d~---------~~-~~~~~i~~g~~~~D~~~dpdg--ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-p  225 (369)
T PF02239_consen  159 DP---------KN-LKVTTIKVGRFPHDGGFDPDG--RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-P  225 (369)
T ss_dssp             TS---------SC-EEEEEEE--TTEEEEEE-TTS--SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-E
T ss_pred             cc---------cc-cceeeecccccccccccCccc--ceeeecccccceeEEEeeccceEEEEeeccccccccccccc-c
Confidence            41         11 111222233455678888887  55544 5667799999999988776654     33344443 3


Q ss_pred             CCCCCEEEEEeCCCc--EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE----cCCCcEEEEeCCC
Q 012996          227 DPAEHVFYAGSRDGS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG----SEDGMVRVWDPIT  299 (451)
Q Consensus       227 ~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~----~~dg~i~iwd~~~  299 (451)
                      +|....+...+..+.  +-........ ......++.+.++.....+ ..+..+| ++++.+.    ...++|.++|..+
T Consensus       226 hp~~g~vw~~~~~~~~~~~~ig~~~v~-v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  226 HPGFGPVWATSGLGYFAIPLIGTDPVS-VHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEE--TTT--STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             CCCcceEEeeccccceecccccCCccc-cchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence            443322222222222  2222222111 0222335677777776666 7788899 8999888    4558899999999


Q ss_pred             CceEEEeecCC-CCeeEEEEEecCceeeeccCCC--CccccccCCCCCC
Q 012996          300 HNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQLP  345 (451)
Q Consensus       300 ~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~s~d~--~i~iw~~~~~~~~  345 (451)
                      .+.+.++.... ..+..+.|+++|+++..+..++  .|.++|..+.+..
T Consensus       304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence            98888886433 3699999999999886655443  5999998765443

...

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=2.1e-17  Score=138.14  Aligned_cols=300  Identities=16%  Similarity=0.181  Sum_probs=202.2

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      +|..|+ .|| -++++.+.-....     ....+++..+.  ..-...++|..+.+ ...++++++.............+
T Consensus        19 ~lsvGs-~~G-yk~~~~~~~~k~~-----~~~~~~~~IvE--mLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~   89 (391)
T KOG2110|consen   19 LLSVGS-KDG-YKIFSCSPFEKCF-----SKDTEGVSIVE--MLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS   89 (391)
T ss_pred             EEEccC-CCc-eeEEecCchHHhh-----cccCCCeEEEE--eecccceeEEEecCCCceEEEEEcccCceEEEEecCCc
Confidence            455666 554 5677766543311     11234455555  44445566555554 25799999999888888878899


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec---cccCCeeEEEEccCCcEEEEe--eCCCcEEEeeCcchhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---AHYRAVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~  157 (451)
                      |.++.++.  +.|+++-.+ .|+|||+++.+++.++.   .+...+.++.+++.+.+++--  ...|.|.+||+.     
T Consensus        90 IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-----  161 (391)
T KOG2110|consen   90 ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-----  161 (391)
T ss_pred             eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-----
Confidence            99999974  456665554 59999999999988774   345566667777677788843  336899999994     


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc-EEEEEcCCCceeeeee---cccceeEEEECCCCCEE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVF  233 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l  233 (451)
                            ....+..+..|.+++.+++|+++|  .+|+|++..|+ ||++.+.+|+.+..|.   ....|.+++|+|++.+|
T Consensus       162 ------nl~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  162 ------NLQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             ------cceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence                  456677788999999999999999  89999999997 6899999999999987   46789999999999999


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-  312 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-  312 (451)
                      ++.+..++|++|.+........ .........        .-.|  ...+.+---.+.-.+||...  ...+.+...+. 
T Consensus       234 ~~sS~TeTVHiFKL~~~~~~~~-~~p~~~~~~--------~~~~--sk~~~sylps~V~~~~~~~R--~FAt~~l~~s~~  300 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEKVSNNPP-ESPTAGTSW--------FGKV--SKAATSYLPSQVSSVLDQSR--KFATAKLPESGR  300 (391)
T ss_pred             EEecCCCeEEEEEecccccCCC-CCCCCCCcc--------cchh--hhhhhhhcchhhhhhhhhcc--ceeEEEccCCCc
Confidence            9999999999999987531110 000000000        0000  01111100011222355432  33333333332 


Q ss_pred             --eeEEEEEecCceeeeccCCCCccccccCC
Q 012996          313 --VNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       313 --v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                        +..+.-.+...++..++.||.+..+.+..
T Consensus       301 ~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  301 KNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             cceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence              33333335788999999999999998764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.81  E-value=7.2e-18  Score=160.90  Aligned_cols=304  Identities=16%  Similarity=0.182  Sum_probs=205.2

Q ss_pred             EECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-------eeee-cCCCCeeEEEEC
Q 012996           18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-------EVKS-LPAEPIKPIAAN   89 (451)
Q Consensus        18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-------~~~~-~~~~~v~~~~~~   89 (451)
                      |+. .|..+..+..|.+.+..+..    -++.+.++++++.| |+|++|+...-..       .... .....+.++...
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~----s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAV----SSEHTSLFVSGSDD-GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCc-cceEeehhhhccccccceee----cCCCCceEEEecCC-ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence            664 58888888777766554442    23556888888888 9999999864221       1222 246789999999


Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCc-------ceeeeccc-cCCeeE-EEEcc-CCc-EEEEeeCCCcEEEeeCcchhhhh
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGR-------LLKKWHAH-YRAVTC-LVFSE-DGS-FLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~v~~-~~~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      +.+..+|+++.||.|.+.++....       .....+.+ .+.+.+ -+|.. .+. .++.+...+.|..||++...   
T Consensus      1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~--- 1184 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH--- 1184 (1431)
T ss_pred             cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh---
Confidence            999999999999999999986521       11112222 233333 34433 333 68888889999999997632   


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--cceeEEEECCC---CCEE
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--SVIDAIALDPA---EHVF  233 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~---~~~l  233 (451)
                            ...........+.|++++.++.+  ++++.|+..|.+.+||++-+.++....++  .++..++.+|-   ....
T Consensus      1185 ------~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1185 ------DAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred             ------hHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence                  22233345567899999999998  89999999999999999999988887754  56777777763   2444


Q ss_pred             EEEe--CCCcEEEEEccCCCCCCCCCCc--e-eeee-e------ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996          234 YAGS--RDGSIYIAALNAESPSTSSYGM--H-IIGS-L------SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       234 ~~~~--~dg~i~i~d~~~~~~~~~~~~~--~-~~~~-~------~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~  300 (451)
                      ++++  ..+.|.+|++.++.........  . .+.. .      +.+.-......+.. +.++++|+.|..|+.||....
T Consensus      1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             EEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            4443  5678999999887542211100  0 0000 0      01122223333444 889999999999999997542


Q ss_pred             ceE-----------------------------EE-------------------e--------ecCCCCeeEEEEEecC-c
Q 012996          301 NIV-----------------------------RM-------------------F--------RLAKGPVNNILVVRRP-L  323 (451)
Q Consensus       301 ~~~-----------------------------~~-------------------~--------~~~~~~v~~l~~s~~~-~  323 (451)
                      ...                             ..                   .        ..|..+|+++++-... .
T Consensus      1337 ~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~ 1416 (1431)
T KOG1240|consen 1337 EISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQP 1416 (1431)
T ss_pred             ccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCcc
Confidence            211                             00                   0        0566789999887644 6


Q ss_pred             eeeeccCCCCccccc
Q 012996          324 YLNLGSFSNPHTSSR  338 (451)
Q Consensus       324 ~l~~~s~d~~i~iw~  338 (451)
                      +|++++.||.|++|+
T Consensus      1417 llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1417 LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             EEEEecCCCeeeecC
Confidence            889999999999995

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=6e-18  Score=138.71  Aligned_cols=242  Identities=16%  Similarity=0.164  Sum_probs=189.7

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      ..++|+|.+|++|+..+|++..+..|.||......   ...++..|...|++++|+|..+.|++++.|..-++|....  
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~--   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS--   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC--
Confidence            45899999999999999999999999999976554   5778899999999999999999999999999999999843  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee-----eeeecccceeEEEECCCC
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-----RNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~  230 (451)
                            .....+...+..+....+++.|+|.+  +.+++|+....|.+|-+.....-     ....+.+.|.++.|+|++
T Consensus        87 ------~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   87 ------GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ------CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence                  14556666677789999999999998  89999999999999988654332     122356889999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCC----CCCCCCCC-----ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996          231 HVFYAGSRDGSIYIAALNAE----SPSTSSYG-----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~----~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~  300 (451)
                      -+|++|+.|+..++|..--.    ++...+.+     ...+.++....+.|..+.|+| |..|+-.+.|+.+.+-|....
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            99999999999999875321    11111111     122333445568999999999 999999999999999997765


Q ss_pred             c-eEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996          301 N-IVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (451)
Q Consensus       301 ~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d  331 (451)
                      . .+.......-|..++.|-.+...++. +.|
T Consensus       239 ~~~v~~~~~~~lP~ls~~~ise~~vv~a-g~~  269 (361)
T KOG1523|consen  239 SERVQSVATAQLPLLSVSWISENSVVAA-GYD  269 (361)
T ss_pred             chhccchhhccCCceeeEeecCCceeec-CCC
Confidence            4 44555444568888888877654444 444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.2e-18  Score=138.93  Aligned_cols=253  Identities=17%  Similarity=0.251  Sum_probs=182.9

Q ss_pred             eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECCCCcEEEEeccCC
Q 012996           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSG  102 (451)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg  102 (451)
                      +...++   .+...++++.  |-.+++ |.++... |.|++|++.+....  ++..+...|+.+..-|++ .|.+-+.|+
T Consensus         6 P~fvLR---p~~~~v~s~~--fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~   77 (323)
T KOG0322|consen    6 PFFVLR---PHSSSVTSVL--FQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDP   77 (323)
T ss_pred             CeeEec---cccchheehh--hccchh-hhccccc-ceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCc
Confidence            344455   3456677777  777666 6777777 99999999876644  333577889999999874 566778899


Q ss_pred             CEEEEEcCCCccee--------------ee---------------------------------------ccccCCeeEEE
Q 012996          103 DIYMWEVASGRLLK--------------KW---------------------------------------HAHYRAVTCLV  129 (451)
Q Consensus       103 ~i~iwd~~~~~~~~--------------~~---------------------------------------~~~~~~v~~~~  129 (451)
                      .+.+|++.-+..+.              .+                                       .+..+.+.|..
T Consensus        78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~  157 (323)
T KOG0322|consen   78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD  157 (323)
T ss_pred             eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence            99999875421110              00                                       01224455555


Q ss_pred             Ecc-CCc--EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996          130 FSE-DGS--FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (451)
Q Consensus       130 ~~~-~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~  206 (451)
                      +.. ++.  +++.|.++|.+.+||+.++...... ............|..+|.++.+.+..  ..=++|+.+..+..|++
T Consensus       158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~-~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga~dkl~~~Sl  234 (323)
T KOG0322|consen  158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL-PQSSKVESPNASHKQPVLSLDYASSC--DRGISGGADDKLVMYSL  234 (323)
T ss_pred             ccccccceEEEEEeccCCeEEEEEccCCceeecc-ccccccccchhhccCcceeeeechhh--cCCcCCCccccceeeee
Confidence            433 232  4667888999999999774222111 12234455567799999999987654  45678888888999988


Q ss_pred             CCC--ceee--eee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C
Q 012996          207 LKG--RLLR--NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G  280 (451)
Q Consensus       207 ~~~--~~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  280 (451)
                      ...  .+..  .+. .+..+..+.+-||++.+++++.|++|++|..++.         .++..+..|...|++++|+| .
T Consensus       235 ~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  235 NHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             ccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCCCC
Confidence            643  2221  112 3456888999999999999999999999999997         56788999999999999999 7


Q ss_pred             CEEEEEcCCCcEEEEeC
Q 012996          281 DLLISGSEDGMVRVWDP  297 (451)
Q Consensus       281 ~~l~s~~~dg~i~iwd~  297 (451)
                      .++|+++.|++|.+|++
T Consensus       306 ~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 ELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhccCCceEEeeec
Confidence            99999999999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=7.8e-18  Score=141.69  Aligned_cols=282  Identities=10%  Similarity=0.089  Sum_probs=203.4

Q ss_pred             EEEeecCCCCCCeEEEECccC------ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee
Q 012996            3 LLIASSSVADTGIGCWDLESG------AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK   76 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~   76 (451)
                      -.||+|+ .|..++||+++..      +++.. .++ .|...|.|++  |......+.+|+.+ ++|...|+++.+....
T Consensus        69 ~~L~SGG-DD~~~~~W~~de~~~~k~~KPI~~-~~~-~H~SNIF~L~--F~~~N~~~~SG~~~-~~VI~HDiEt~qsi~V  142 (609)
T KOG4227|consen   69 RFLASGG-DDMHGRVWNVDELMVRKTPKPIGV-MEH-PHRSNIFSLE--FDLENRFLYSGERW-GTVIKHDIETKQSIYV  142 (609)
T ss_pred             eEEeecC-CcceeeeechHHHHhhcCCCCcee-ccC-ccccceEEEE--EccCCeeEecCCCc-ceeEeeecccceeeee
Confidence            4789999 9999999998633      33322 222 3557899999  99999999999998 9999999999887776


Q ss_pred             ecCCC---CeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-cee--eeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEe
Q 012996           77 SLPAE---PIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLK--KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW  149 (451)
Q Consensus        77 ~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~--~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw  149 (451)
                      ..|..   .|+.+..+|..+.|++.+.++.|.+||.+... .+.  .+.........+.|+| ...+|++.+..+-+.+|
T Consensus       143 ~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~  222 (609)
T KOG4227|consen  143 ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVF  222 (609)
T ss_pred             ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence            66644   99999999999999999999999999997654 222  2223445677889999 56788899999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeeecc-------cce
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIVFP-------SVI  221 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~-------~~i  221 (451)
                      |.+......-.    ......+......-.+..|+++|  +.+++--....-.+||+-+.++ +..+.|.       ..+
T Consensus       223 D~R~~~~~~~~----~~~~~~L~~~~~~~M~~~~~~~G--~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~  296 (609)
T KOG4227|consen  223 DRRMQARPVYQ----RSMFKGLPQENTEWMGSLWSPSG--NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTI  296 (609)
T ss_pred             eeccccchHHh----hhccccCcccchhhhheeeCCCC--CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeee
Confidence            99762211100    00011122222233567888888  7888777777778889877543 3333332       245


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC--------------CCCceeeeeeccCCcceeEEEEec-CCEEEEE
Q 012996          222 DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS--------------SYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (451)
Q Consensus       222 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~  286 (451)
                      .+++|-.+-. +++|+.+-.|++|.+........              ...-..+..+++|..-++.+.|+| ..+|++.
T Consensus       297 KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SS  375 (609)
T KOG4227|consen  297 KSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSS  375 (609)
T ss_pred             eeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEecc
Confidence            6677765444 89999999999999865432111              011234567899999999999999 8888888


Q ss_pred             cCCCcEEEEeC
Q 012996          287 SEDGMVRVWDP  297 (451)
Q Consensus       287 ~~dg~i~iwd~  297 (451)
                      +-...++||..
T Consensus       376 GVE~~~KlWS~  386 (609)
T KOG4227|consen  376 GVENSFKLWSD  386 (609)
T ss_pred             chhhheecccc
Confidence            89999999974

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=2.5e-19  Score=153.71  Aligned_cols=260  Identities=16%  Similarity=0.199  Sum_probs=206.1

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV  125 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  125 (451)
                      |+.+|++++.+|.. |.|..+|+.+..+.....-.+.|..+.|-.+..++|++- ...++||| ..|..+..++.| ..|
T Consensus       137 ytrnGrhlllgGrK-GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v  212 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRK-GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRV  212 (545)
T ss_pred             ecCCccEEEecCCc-cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-Cch
Confidence            89999999999999 999999999999988888889999999999899888854 56899999 678888888766 568


Q ss_pred             eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996          126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (451)
Q Consensus       126 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd  205 (451)
                      ..+.|.|..-+|++++..|.++.-|+.+           ...+..+....+.+..++-+|-.  ..+-+|...|+|.+|.
T Consensus       213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~-----------GklVa~~~t~~G~~~vm~qNP~N--aVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  213 ARLEFLPYHFLLVAASEAGFLKYQDVST-----------GKLVASIRTGAGRTDVMKQNPYN--AVIHLGHSNGTVSLWS  279 (545)
T ss_pred             hhhcccchhheeeecccCCceEEEeech-----------hhhhHHHHccCCccchhhcCCcc--ceEEEcCCCceEEecC
Confidence            8999999888899999999999999965           44566666677788888877766  7889999999999999


Q ss_pred             cCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEE
Q 012996          206 LLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI  284 (451)
Q Consensus       206 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~  284 (451)
                      ....+++..+. |.++|.++++.++|.++++.+.|..++|||++...         .+.++.. ..+...+++|... ++
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---------ql~t~~t-p~~a~~ls~Sqkg-lL  348 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---------QLHTYRT-PHPASNLSLSQKG-LL  348 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------ccceeec-CCCcccccccccc-ce
Confidence            99988877665 99999999999999999999999999999999863         2223322 4567788888733 44


Q ss_pred             EEcCCCcEEEEe-CCCCc--eEEEeecC--CCCeeEEEEEecCceeeeccCCCC
Q 012996          285 SGSEDGMVRVWD-PITHN--IVRMFRLA--KGPVNNILVVRRPLYLNLGSFSNP  333 (451)
Q Consensus       285 s~~~dg~i~iwd-~~~~~--~~~~~~~~--~~~v~~l~~s~~~~~l~~~s~d~~  333 (451)
                      +++....|.||. .-.+.  .-..+-.|  .++|.++.|.|-...|-.|-.-|.
T Consensus       349 A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  349 ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence            445566799995 22211  11111112  458999999997766666544443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=7.6e-18  Score=156.54  Aligned_cols=232  Identities=15%  Similarity=0.122  Sum_probs=164.2

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcc--eeeeccccCCeeEEEEccCCc
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRL--LKKWHAHYRAVTCLVFSEDGS  135 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~  135 (451)
                      ..|.+||.+.........+...+.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+|||+
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~  260 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS  260 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC
Confidence            79999999876655555567789999999999999887654   3699999988754  3333333   34689999999


Q ss_pred             EEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCCC-cee
Q 012996          136 FLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKG-RLL  212 (451)
Q Consensus       136 ~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~~-~~~  212 (451)
                      .|+.++ .+|.+.||.+..         ... ....+..+...+.+..|+|++  ..|+ ++..+|...||++... ...
T Consensus       261 ~La~~~~~~g~~~Iy~~d~---------~~~-~~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGA---------NGG-TPSQLTSGAGNNTEPSWSPDG--QSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             EEEEEEecCCcEEEEEEEC---------CCC-CeEeeccCCCCcCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCe
Confidence            888764 688776664421         111 233455566678889999998  5554 5556788888876532 222


Q ss_pred             eeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc
Q 012996          213 RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM  291 (451)
Q Consensus       213 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~  291 (451)
                      ..+.+..  ....|+|+|+.|+.++.++ +.+||+.++..       .   .+..+ .....+.|+| +.+|+.++.+|.
T Consensus       329 ~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-------~---~lt~~-~~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        329 SLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST-------E---VLSST-FLDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             EEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-------E---EecCC-CCCCCceECCCCCEEEEEEcCCC
Confidence            2222322  4578999999998887755 66699877641       1   11111 1235678999 999999999998


Q ss_pred             EEEEeC--CCCceEEEeecCCCCeeEEEEEec
Q 012996          292 VRVWDP--ITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       292 i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      +.+|++  .++..++.+..|.+.+...+|+|-
T Consensus       395 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        395 GKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            888875  468888999888888999999984

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=3.3e-18  Score=149.50  Aligned_cols=207  Identities=18%  Similarity=0.222  Sum_probs=160.3

Q ss_pred             CcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE
Q 012996           51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF  130 (451)
Q Consensus        51 ~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  130 (451)
                      ..++.++.| |.+.+.+-..........|.+.+.|-.|+|||.-|++++.||.|++|. ++|.+..++-....+|.|++|
T Consensus        76 d~~~i~s~D-Gkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSND-GRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCC-ceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            345666666 888888755444445566889999999999999999999999999999 688777777777889999999


Q ss_pred             ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc
Q 012996          131 SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR  210 (451)
Q Consensus       131 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  210 (451)
                      .|+.+.++-+.. +.+.|=.+           .....+.....|.+-|.++.|++..  +++++|+.|-..++||-....
T Consensus       154 ~p~S~~vl~c~g-~h~~IKpL-----------~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~G~~  219 (737)
T KOG1524|consen  154 APNSNSIVFCQG-GHISIKPL-----------AANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQGAN  219 (737)
T ss_pred             CCCCCceEEecC-CeEEEeec-----------ccccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeecccCcc
Confidence            997766555433 35666555           2344556688999999999999887  899999999999999976555


Q ss_pred             eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996          211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (451)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d  289 (451)
                      ....-.|+.+|++++|.|+ ..+++++. +..+                    --....+.|..++||+ |..+++|+..
T Consensus       220 Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R--------------------~~~p~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  220 LFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR--------------------FSSPRVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             cccCChhccceeeeeeccc-cceeeeee-eeee--------------------ecCCCccceEEEEEcCCCceeeccccC
Confidence            5555569999999999999 55555543 2222                    1112457899999999 9999999999


Q ss_pred             CcEEEE
Q 012996          290 GMVRVW  295 (451)
Q Consensus       290 g~i~iw  295 (451)
                      |.+.+=
T Consensus       278 G~v~~A  283 (737)
T KOG1524|consen  278 GQLIVA  283 (737)
T ss_pred             ceEEEe
Confidence            987653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.1e-18  Score=148.28  Aligned_cols=198  Identities=21%  Similarity=0.315  Sum_probs=157.7

Q ss_pred             eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996          126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (451)
Q Consensus       126 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd  205 (451)
                      .+++|+++|..+++++.||++|||+.           +....+.....|...|.++.|+|++  .+|++.+.| ..+||+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~-----------Ps~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEW-----------PSMLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEec-----------CcchhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEE
Confidence            68999999999999999999999997           3455566677899999999999999  899999999 899999


Q ss_pred             cCCCceeeeee---cccceeEEEECCCC-----CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996          206 LLKGRLLRNIV---FPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (451)
Q Consensus       206 ~~~~~~~~~~~---~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  277 (451)
                      ..++..+....   .+.....+.|+.++     ..++.-...+.|+.|++.......    .-...........|++++.
T Consensus       214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEE
Confidence            99996665554   34456677777766     333334455678888776543210    0112222233458999999


Q ss_pred             ec-CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       278 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ++ |++++.|+.||.|.|++..+.++++.++ .|...|+.+.|+||.+++++.+.|....+-.+..
T Consensus       290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99 9999999999999999999988887665 7889999999999999999999999988887654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=1.8e-17  Score=135.91  Aligned_cols=234  Identities=12%  Similarity=0.166  Sum_probs=175.8

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      ...|+|.+  |++++..+|++... ..|.||...+.+.-    ....|...|++|+|+|..+.|++++.|..-+||...+
T Consensus        10 ~~pitchA--wn~drt~iAv~~~~-~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   10 LEPITCHA--WNSDRTQIAVSPNN-HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             cCceeeee--ecCCCceEEeccCC-ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            46789999  99999999999887 89999998876622    2344788999999999999999999999999999843


Q ss_pred             C---cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996          112 G---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (451)
Q Consensus       112 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (451)
                      +   +....+..+....+++.|+|.++.|++|+.-..|.||-++...       .=....+.-..+...|+++.|++++ 
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-------dWWVsKhikkPirStv~sldWhpnn-  158 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-------DWWVSKHIKKPIRSTVTSLDWHPNN-  158 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-------ceehhhhhCCccccceeeeeccCCc-
Confidence            3   3444556788999999999999999999999999999885411       0111223335577899999999998 


Q ss_pred             eeEEEEeeCCCcEEEEEcC-----C-------------Cceeeee-ecccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          189 SATIVSASEDRTCKVWSLL-----K-------------GRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       189 ~~~l~s~~~d~~i~iwd~~-----~-------------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                       -++++|+.|+.++++..-     .             |+.+..+ ...+.+..+.|+|+|..|+-.+.|..+.+-|...
T Consensus       159 -VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  159 -VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             -ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence             799999999999998642     1             2233333 3467899999999999999999999999999877


Q ss_pred             CCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC
Q 012996          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED  289 (451)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d  289 (451)
                      ..+        .+.......-+..++.|-....++.++.|
T Consensus       238 p~~--------~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  238 PSE--------RVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             Cch--------hccchhhccCCceeeEeecCCceeecCCC
Confidence            642        12222222255566666543334444443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.2e-17  Score=155.19  Aligned_cols=237  Identities=14%  Similarity=0.082  Sum_probs=162.7

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEEC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN   89 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~   89 (451)
                      +..|.+||..... ...+..   +...+....  |+|+|+.++.++.++  ..|.+||+.++.........+....++|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~---~~~~v~~p~--wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNR---SSQPLMSPA--WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC-ceEecc---CCCccccce--EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence            5789999986444 444443   334566666  999999998876542  47999999887654333333445678999


Q ss_pred             CCCcEEEEec-cCCCEEEE--EcCCCcceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccc
Q 012996           90 SHGTYIAGGG-QSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        90 ~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |||+.|+.++ .+|.+.||  |+.++. ...+..+...+....|+|||+.|+.++ .+|...||++...         ..
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~---------~~  326 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS---------GG  326 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC---------CC
Confidence            9999888764 57765554  665554 445566777788999999999877554 5788899987431         11


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (451)
                       ....+ .+..  ....|+|++  +.++.++.++ +.+||+.+++...... ......+.|+|+++.|+.++.++.+.+|
T Consensus       327 -~~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        327 -GASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             -CeEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence             11111 2332  356788988  7777777665 6669998886543222 2234567899999999999999988888


Q ss_pred             EccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      ++....       ......+..|.+.+...+|+|
T Consensus       399 ~~~~~~-------G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        399 QLVSAD-------GRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             EEEECC-------CCceEEccCCCCCCCCcccCC
Confidence            764321       134566777888899999998

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=6.7e-18  Score=143.61  Aligned_cols=195  Identities=24%  Similarity=0.237  Sum_probs=149.4

Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      .+++|+++|..+++|+.||.++||+..+...+.....|.+.|.++.|+|||++|++.+.| ..+||++.++..       
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-------  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-------  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-------
Confidence            789999999999999999999999988888888888999999999999999999999999 999999977421       


Q ss_pred             cccceecc--cCCcCceeEEEEeecCCe--eEEE-EeeCCCcEEEEEcCCCce------eeeeecccceeEEEECCCCCE
Q 012996          164 SHLYLHSF--TGHTLRITDIVIGYGGVS--ATIV-SASEDRTCKVWSLLKGRL------LRNIVFPSVIDAIALDPAEHV  232 (451)
Q Consensus       164 ~~~~~~~~--~~~~~~i~~i~~~~~~~~--~~l~-s~~~d~~i~iwd~~~~~~------~~~~~~~~~i~~~~~~~~~~~  232 (451)
                          +...  .........+.|+.++..  -+++ .....+.|+.||+....-      .+.+.....|.+++.+++|++
T Consensus       220 ----~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  220 ----LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF  295 (398)
T ss_pred             ----hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence                1111  122334445566655421  1222 233445677766643221      112224568999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      ++.|+.||.|.+++....+        .....-+.|...|+.+.|+| .+++++.+.|....+..+.
T Consensus       296 ~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  296 LALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999999999999998764        33445567999999999999 9999999999888887764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=9.9e-17  Score=141.53  Aligned_cols=300  Identities=12%  Similarity=0.114  Sum_probs=211.8

Q ss_pred             CCeEEEECccCceeeeeec---------------------CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC
Q 012996           13 TGIGCWDLESGAEQLRYKS---------------------CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP   71 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~   71 (451)
                      +.|+||+++.|+.+..+-.                     --.++..-+.+.  .+|||+|+.++|.---.|++||+.+.
T Consensus         7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik--~s~DGqY~lAtG~YKP~ikvydlanL   84 (703)
T KOG2321|consen    7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIK--VSPDGQYLLATGTYKPQIKVYDLANL   84 (703)
T ss_pred             CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeE--ecCCCcEEEEecccCCceEEEEcccc
Confidence            4688999887765433211                     112334444455  99999998777765489999999988


Q ss_pred             ceeeeecC-CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           72 QVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        72 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      .+.+.... .+.|.-.-.+.|-.-++.-..|..|.+.. .-|....+ + -...-.+++++.-..-|+.++....|.-++
T Consensus        85 SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-k~G~hy~~-R-IP~~GRDm~y~~~scDly~~gsg~evYRlN  161 (703)
T KOG2321|consen   85 SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-KYGRHYRT-R-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLN  161 (703)
T ss_pred             eeeeeecccccceeEEEeccchhhheEeecCceeeehh-hcCeeeee-e-cCcCCccccccCCCccEEEeecCcceEEEE
Confidence            77766544 34555555565655555556677776643 22222111 1 011224566654222344445555788888


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc-----------
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-----------  219 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------  219 (451)
                      ++           ...++..+....+.++++.+++..  .+|++|+.+|.|..||.++...+..+....           
T Consensus       162 LE-----------qGrfL~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~  228 (703)
T KOG2321|consen  162 LE-----------QGRFLNPFETDSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA  228 (703)
T ss_pred             cc-----------ccccccccccccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCcccccc
Confidence            84           456677777777899999998877  799999999999999999888777665322           


Q ss_pred             -ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEE
Q 012996          220 -VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVW  295 (451)
Q Consensus       220 -~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iw  295 (451)
                       .|+++.|+.+|-.+++|+.+|.++|||+++..+        .+..-.+..-+|..+.|.+   ++.+++ .....++||
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiW  299 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIW  299 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccCCc--------eeecccCCccceeeecccccCCCceEEe-cchHHhhhc
Confidence             399999999999999999999999999999763        2333334456899999987   344544 456679999


Q ss_pred             eCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |-.+|+....+.. ...+..+|+-|++.+++++-.++.+..+=+.
T Consensus       300 d~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  300 DECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             ccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            9999999998876 4569999999999999999888877666554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=1.1e-16  Score=141.00  Aligned_cols=308  Identities=12%  Similarity=0.090  Sum_probs=202.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      .++.-+  .-.+.+|+........+...+..........+  ++++|+++|.+..  +.+.|++.......+..... .+
T Consensus         4 ~~aVRs--Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~--~S~~G~lfA~~~~--~~v~i~~~~~~~~~lt~~~~-~~   76 (566)
T KOG2315|consen    4 VYAVRS--SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFA--YSNNGRLFAYSDN--QVVKVFEIATLKVVLCVELK-KT   76 (566)
T ss_pred             eEEEEc--cceeEEeccCCccccccccccCCCCCcceeEE--EcCCCcEEEEEcC--CeEEEEEccCCcEEEEeccc-ee
Confidence            344444  34688998765343333333321223333444  8999999988776  69999999888655555555 89


Q ss_pred             eEEEECCCCcEEEEe-----cc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           84 KPIAANSHGTYIAGG-----GQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .++.|+|.|++|.+-     ..     .-.+.+|++.++.....+......-++..|++|..+.+-- ..+.+.+|++..
T Consensus        77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~  155 (566)
T KOG2315|consen   77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGS  155 (566)
T ss_pred             eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCC
Confidence            999999999998752     11     2347899999865555554333333689999887654322 235788888754


Q ss_pred             hhhhhhhhcccccceecccCCcCceeE----------------------------------------------------E
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITD----------------------------------------------------I  181 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------------------------------------i  181 (451)
                      ......            .-|...|+.                                                    +
T Consensus       156 f~~~~~------------kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm  223 (566)
T KOG2315|consen  156 FKTIQH------------KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM  223 (566)
T ss_pred             ccceee------------eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence            211000            001222222                                                    2


Q ss_pred             EEeecCCeeEEEE-eeCC---------CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE--eCCCcEEEEEccC
Q 012996          182 VIGYGGVSATIVS-ASED---------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNA  249 (451)
Q Consensus       182 ~~~~~~~~~~l~s-~~~d---------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  249 (451)
                      .|.+.+.+-++++ ..-|         .+++++++........+...++|.++.|+|+++-|+++  -.-..+.+||++.
T Consensus       224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~  303 (566)
T KOG2315|consen  224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG  303 (566)
T ss_pred             EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence            3333333211111 1112         24666666544444455567899999999999887764  4566899999986


Q ss_pred             CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee
Q 012996          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL  325 (451)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  325 (451)
                      .          ++..  -..++=+++.|+| |++++.+|-+   |.|-|||+.+.+++..+.....  +-+.|+|||++|
T Consensus       304 ~----------~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~f  369 (566)
T KOG2315|consen  304 K----------PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYF  369 (566)
T ss_pred             C----------EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEE
Confidence            3          3333  3467888999999 9999888764   7899999999999999887544  667999999999


Q ss_pred             eecc------CCCCccccccCCCCCC
Q 012996          326 NLGS------FSNPHTSSRRHGSQLP  345 (451)
Q Consensus       326 ~~~s------~d~~i~iw~~~~~~~~  345 (451)
                      +|++      -|+.++||...|..+.
T Consensus       370 lTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  370 LTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             EEEeccccEEecCCeEEEEecCceee
Confidence            8877      4789999999887653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=3.8e-18  Score=146.54  Aligned_cols=261  Identities=15%  Similarity=0.170  Sum_probs=206.3

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      .|+.|+ ..|.|..+|+.++.....+...    ..|..+.  |..+.+++|++-.  ..+.|||-..-++.....+ ..|
T Consensus       143 hlllgG-rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~--~LHneq~~AVAQK--~y~yvYD~~GtElHClk~~-~~v  212 (545)
T KOG1272|consen  143 HLLLGG-RKGHLAAFDWVTKKLHFEINVM----ETVRDVT--FLHNEQFFAVAQK--KYVYVYDNNGTELHCLKRH-IRV  212 (545)
T ss_pred             EEEecC-Cccceeeeecccceeeeeeehh----hhhhhhh--hhcchHHHHhhhh--ceEEEecCCCcEEeehhhc-Cch
Confidence            466777 7999999999999998887533    4455666  9999999999877  6999999776666554444 689


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      ..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|..           .
T Consensus       213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP-----------~  281 (545)
T KOG1272|consen  213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP-----------N  281 (545)
T ss_pred             hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC-----------C
Confidence            99999999999999999999999999999999999888899999999998888999999999999998           3


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEE
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY  243 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  243 (451)
                      ...++..+..|.++|.++++.++|  .+++|++.|..++|||++....+.++..+.+...+++|..|  +++.+....+.
T Consensus       282 skePLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~  357 (545)
T KOG1272|consen  282 SKEPLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQ  357 (545)
T ss_pred             CcchHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeee
Confidence            455667778899999999999999  99999999999999999998888777777788888887655  33344556788


Q ss_pred             EEEccCC-CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996          244 IAALNAE-SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (451)
Q Consensus       244 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i  294 (451)
                      +|.=... ....     ..........++|..+.|.| .+.|-.|...|.-.+
T Consensus       358 iw~d~~~~s~~~-----~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  358 IWKDALKGSGHG-----ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             eehhhhcCCCCC-----CcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence            8843222 1100     11111111235899999999 888877766664333

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=1.7e-16  Score=151.71  Aligned_cols=265  Identities=12%  Similarity=0.110  Sum_probs=184.6

Q ss_pred             EECCCCceeeeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCC-------cceeeeccccCCeeEEEEccCCcEE
Q 012996           66 WSWSKPQVEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        66 w~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      |+.....+.....|...|..++.++.. .++++|+.||+|++|+.+.-       +...++..-...+.++...+.+..+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            554444444445577788888887754 99999999999999998642       2233344456788999999999999


Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEE-EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDI-VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  215 (451)
                      |.++.||.|.+.++.......    ........... ..+.+.++ ++........++.+..-+.|..||++.......+
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~----~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSK----RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             EEEcCCCeEEEEEcccccccc----ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence            999999999999986521100    00111111111 22334444 3333333247888889999999999988777666


Q ss_pred             e---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--C--CEEEEEcC
Q 012996          216 V---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G--DLLISGSE  288 (451)
Q Consensus       216 ~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~~l~s~~~  288 (451)
                      +   ..+.|++++.+|.+.++++|+..|.+.+||++-+.+.        ..--..+..++..+..+|  +  ...++++.
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i--------~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI--------LSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee--------ecccCcccCCcceEEeeccCCCCceEEEecc
Confidence            5   3578999999999999999999999999999986421        112234557888888888  4  56666654


Q ss_pred             --CCcEEEEeCCCCceEEEeecCC-----------------C--CeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          289 --DGMVRVWDPITHNIVRMFRLAK-----------------G--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       289 --dg~i~iwd~~~~~~~~~~~~~~-----------------~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                        .+-|.+|++.+|.+-.++-...                 .  +.....+...+.++.+|+.|+.|+.||....
T Consensus      1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence              6779999999987766654321                 1  1222333445578899999999999997644

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=2.5e-16  Score=129.29  Aligned_cols=235  Identities=15%  Similarity=0.259  Sum_probs=167.9

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC--eeEEEEccCCcEEE-EeeCC------CcEEEeeCc
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA--VTCLVFSEDGSFLI-SGSED------GCVRIWSLL  152 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~-s~~~d------g~i~vwd~~  152 (451)
                      ...+++|+.|...+++|..+| .+||+++.-+.....+.+.+.  +.-+-|-  .++|+ +||.+      ..|.|||= 
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD-   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD-   82 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec-
Confidence            455699999999999988776 899998764433222222222  2223332  33444 34333      46999993 


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeee---cccceeEEEECC
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV---FPSVIDAIALDP  228 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~---~~~~i~~~~~~~  228 (451)
                                ....++..+. ...+|.++.+..+    .|++. ..+.|++|.+. +.+.++.+.   .+....+++-..
T Consensus        83 ----------~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   83 ----------LKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ----------ccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence                      2334444444 5678999998776    33333 46789999988 556666665   344444444333


Q ss_pred             CCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc-EEEEeCCCCceEEE
Q 012996          229 AEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRM  305 (451)
Q Consensus       229 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~-i~iwd~~~~~~~~~  305 (451)
                      +..+|+. |..-|.|.+-|+.....       .....+.+|.+.|.|++.+. |..+||+|..|+ |||||..+|+++.+
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence            5555554 45668999999987652       12456789999999999999 999999999998 89999999999999


Q ss_pred             eecC--CCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          306 FRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       306 ~~~~--~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      ++..  ...|.+++|||++.+||++|+-|++.|+.++...
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            9843  3479999999999999999999999999988644

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.1e-17  Score=141.04  Aligned_cols=222  Identities=22%  Similarity=0.270  Sum_probs=164.0

Q ss_pred             ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEEeecCCeeEE
Q 012996          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      +...+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-           ..++++. -.+|...|.++.|-|...+.++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-----------~~KllhsI~TgHtaNIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-----------EYKLLHSISTGHTANIFSVKFVPYTNNRIV  110 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecch-----------hcceeeeeecccccceeEEeeeccCCCeEE
Confidence            345678999999999999999999999999999999983           3334443 4689999999999998887999


Q ss_pred             EEeeCCCcEEEEEcCCC----------ceeeeee-cccceeEEEECCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCC-c
Q 012996          193 VSASEDRTCKVWSLLKG----------RLLRNIV-FPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPSTSSYG-M  259 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~  259 (451)
                      ++|..|..|+++|+...          .....+. |...|..++..|++ ..+.+++.||.|+.||++.......... .
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            99999999999999742          1222222 66778889999988 8899999999999999998543222111 1


Q ss_pred             eeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCC--------Cc----------eEEEee-cCC--------
Q 012996          260 HIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT--------HN----------IVRMFR-LAK--------  310 (451)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~--------~~----------~~~~~~-~~~--------  310 (451)
                      ..+..+...--...++.++|  ..+|++|+.|--.++||.+.        +.          ++..+. +|.        
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            11122222234567899999  78999999999999999421        11          222222 222        


Q ss_pred             ---CCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          311 ---GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       311 ---~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                         ..++-+.|+|+|.-|...-....|+++++...+.+.
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence               126778899999887776666678899988665543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.76  E-value=4.7e-17  Score=134.03  Aligned_cols=282  Identities=13%  Similarity=0.108  Sum_probs=191.3

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeeeccccCC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRA  124 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~  124 (451)
                      |||+|+++|+.+.  ..+.|-|..+-++......-+.|..+.|..|.-+++++ ..++.|.+|++...+-...+.....+
T Consensus        16 fSp~g~yiAs~~~--yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag   93 (447)
T KOG4497|consen   16 FSPCGNYIASLSR--YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG   93 (447)
T ss_pred             ECCCCCeeeeeee--eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence            9999999999887  58888888887766555556788999999888776655 66789999999998888888888899


Q ss_pred             eeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----
Q 012996          125 VTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----  198 (451)
Q Consensus       125 v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----  198 (451)
                      +..++|+|||+.++ +...|-.|.+|.+.+.         ..   ..+.-....+..++|++++  ++.+.++.-     
T Consensus        94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~---------~~---~~~~~pK~~~kg~~f~~dg--~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQ---------KG---YLLPHPKTNVKGYAFHPDG--QFCAILSRRDCKDY  159 (447)
T ss_pred             ceeeeECCCcceEeeeecceeEEEEEEeccc---------ee---EEecccccCceeEEECCCC--ceeeeeecccHHHH
Confidence            99999999996655 6666889999999652         11   1111122234556666665  444443321     


Q ss_pred             -------------------------------CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 012996          199 -------------------------------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL  247 (451)
Q Consensus       199 -------------------------------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  247 (451)
                                                     ..+.+||---.-.+..+...-.+..++|+|.+++|++|+.|+.+++.+-
T Consensus       160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence                                           2234454322112222233457888999999999999999999888543


Q ss_pred             cCCCCC-----------------------------------CC------------CC----------CceeeeeeccCCc
Q 012996          248 NAESPS-----------------------------------TS------------SY----------GMHIIGSLSDHSK  270 (451)
Q Consensus       248 ~~~~~~-----------------------------------~~------------~~----------~~~~~~~~~~~~~  270 (451)
                      -+-++.                                   ..            .+          ..++...+.....
T Consensus       240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~  319 (447)
T KOG4497|consen  240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC  319 (447)
T ss_pred             eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence            221110                                   00            00          0000111112234


Q ss_pred             ceeEEEEec-CCEEEEEcC--CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          271 AVTCLAYST-GDLLISGSE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      .+.-++|++ ..+++|-.+  -+.+.+||+...+....+. ...+|....|+|.-..|+.+.....+++|...+...
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence            567799999 666666533  2569999998776555443 367999999999998898888888899999887543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-15  Score=126.18  Aligned_cols=269  Identities=16%  Similarity=0.220  Sum_probs=177.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---------
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---------   74 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---------   74 (451)
                      .+|++. .|-+|++||-.. ++...++.  .....|+|++  |-|.+..-++.+.. +.|.+|..+.....         
T Consensus       112 ~fava~-nddvVriy~kss-t~pt~Lks--~sQrnvtcla--wRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~  184 (445)
T KOG2139|consen  112 AFAVAT-NDDVVRIYDKSS-TCPTKLKS--VSQRNVTCLA--WRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMST  184 (445)
T ss_pred             hhhhhc-cCcEEEEeccCC-CCCceecc--hhhcceeEEE--eccCCcceeeeeec-ceeEEEEcCcccccccccccccc
Confidence            367788 899999999665 55555543  3457899999  99976654444444 89999987632211         


Q ss_pred             -----eeecCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEE
Q 012996           75 -----VKSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI  148 (451)
Q Consensus        75 -----~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  148 (451)
                           .+.....+|+++.|.+||..+++++. |..|.|||..++..+.......+.++-+.||||+.+|++++-|+..++
T Consensus       185 ~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrl  264 (445)
T KOG2139|consen  185 HHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRL  264 (445)
T ss_pred             cchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeee
Confidence                 11112468999999999999998875 567999999999877665455678889999999999999999999999


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-------------eeee
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-------------LRNI  215 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------~~~~  215 (451)
                      |....          ...... ..--++.|...+|+|.|. .+|++++..-.++-..+.....             +..+
T Consensus       265 w~e~q----------~wt~er-w~lgsgrvqtacWspcGs-fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL  332 (445)
T KOG2139|consen  265 WQENQ----------SWTKER-WILGSGRVQTACWSPCGS-FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL  332 (445)
T ss_pred             ehhcc----------cceecc-eeccCCceeeeeecCCCC-EEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence            96532          111111 222345899999999985 5566666555444333221110             0001


Q ss_pred             e----------cccceeEEEECCCCCEEEEEeCCC--------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996          216 V----------FPSVIDAIALDPAEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (451)
Q Consensus       216 ~----------~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  277 (451)
                      .          ..+.+.+++|+|.|.+|++....+        .|.+||.+.....    .........+  .....++|
T Consensus       333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v----els~cg~i~g--e~P~~IsF  406 (445)
T KOG2139|consen  333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV----ELSYCGMIGG--EYPAYISF  406 (445)
T ss_pred             hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce----EEEecccccC--CCCceEEe
Confidence            0          135788999999999999976554        3666777654211    0011111111  22455667


Q ss_pred             ec----CCEEEEEcCCCcEEEEeC
Q 012996          278 ST----GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       278 ~~----~~~l~s~~~dg~i~iwd~  297 (451)
                      +|    +.+|..+=..|.+.-|++
T Consensus       407 ~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  407 GPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             eecccCCcEEEEEeccCceEeeee
Confidence            66    556666666677766664

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=6.2e-16  Score=135.53  Aligned_cols=246  Identities=17%  Similarity=0.194  Sum_probs=173.7

Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee----eccccCCeeEEEE-----ccCCcEEEEeeCCCcEEEeeCcc
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----WHAHYRAVTCLVF-----SEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~-----~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      +....++-.|.+|+-.- ...+++|+.+.+..+..    ..-.....+|-.|     .|.+--++.|-.-|.|.+.|...
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            44444555666665532 34689998875432211    1001122334444     34566688888889999998854


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--------------C----------
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--------------G----------  209 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~----------  209 (451)
                      ..-       ..............|+++.|-+.++ ..++.+-.+|.+++||..-              +          
T Consensus       205 ~~~-------sklfne~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks  276 (636)
T KOG2394|consen  205 FEV-------SKLFNEERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS  276 (636)
T ss_pred             hHH-------HHhhhhcccccccceEEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence            110       0000111112347899999999876 6777888999999997531              0          


Q ss_pred             ----ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE
Q 012996          210 ----RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL  283 (451)
Q Consensus       210 ----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l  283 (451)
                          .++..+. ..+.|+..+|+|||++||+.+.||.++|||+.+.         +++..++..-+...|++||| |+||
T Consensus       277 k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  277 KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCccEE
Confidence                0111111 2457889999999999999999999999999986         44556666678899999999 9999


Q ss_pred             EEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe-------------------------------------------
Q 012996          284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-------------------------------------------  320 (451)
Q Consensus       284 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-------------------------------------------  320 (451)
                      ++|++|..|.||.+..++.+..-.+|++.|+.++|.|                                           
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~  427 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF  427 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence            9999999999999999999999999999999999983                                           


Q ss_pred             -----cCceeeeccCCCCccccccCCCCCCC
Q 012996          321 -----RPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       321 -----~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                           ..-.|.+.+.|..+++||+....+.+
T Consensus       428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  428 NRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             ccccceEEEeecccccceEEEEecchhhccc
Confidence                 01246778889999999987655543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.4e-17  Score=152.99  Aligned_cols=255  Identities=20%  Similarity=0.274  Sum_probs=183.4

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      .+|-++|.|..  |...|.++++++.| ..++||..++..+... .+|.+.|+.++.+.++.++++++.|..|++|.+.+
T Consensus       187 lgH~naVyca~--fDrtg~~Iitgsdd-~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  187 LGHRNAVYCAI--FDRTGRYIITGSDD-RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             Hhhhhheeeee--eccccceEeecCcc-ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            35778899999  99999999999988 9999999988876644 56899999999999999999999999999999999


Q ss_pred             CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc-hhhhh--hhhcccccceec----------cc------
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEEC--ESQRASHLYLHS----------FT------  172 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~--~~~~~~~~~~~~----------~~------  172 (451)
                      +.++..+.+|.+.|++++|+|-.    +.+.||++++||.+- ...-.  ............          ..      
T Consensus       264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            99999999999999999999854    778899999999871 00000  000000000000          00      


Q ss_pred             CCcCceeEEEEeecC---------CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC-CCCEEEEEeCCCc
Q 012996          173 GHTLRITDIVIGYGG---------VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGS  241 (451)
Q Consensus       173 ~~~~~i~~i~~~~~~---------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~  241 (451)
                      ...-....++|....         .+.+.+++-.+-.+++|++.+|...+... |...+..+.++| +.....+++.||.
T Consensus       340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence            000001111111111         01234444456678889998888777665 788899999999 5556668899999


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      ..|||+-.+.+.        .....+| ..+..-.||+ |..++....-|.+.|.....++..
T Consensus       420 t~iwdi~eg~pi--------k~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  420 TIIWDIWEGIPI--------KHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             eEeeecccCCcc--------eeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            999999887532        1222444 5666678999 888888888899999876655443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=3.3e-15  Score=138.56  Aligned_cols=233  Identities=15%  Similarity=0.077  Sum_probs=158.1

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      ..|.+||.+.........+...+.+.+|+|||+.|+..+.   +..|++|++.+++.... ....+.+..+.|+|||+.|
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence            5799999887665555556678999999999999886542   34699999988754322 2223334568999999988


Q ss_pred             EEe-eCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CCc--EEEEEcCCCce
Q 012996          138 ISG-SEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRT--CKVWSLLKGRL  211 (451)
Q Consensus       138 ~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~  211 (451)
                      +.. +.+|  .|.+||+.++           . ...+..+...+....|+|++  +.|+..+. ++.  |+++|+.++..
T Consensus       258 a~~~~~~g~~~I~~~d~~tg-----------~-~~~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASG-----------Q-IRQVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCC-----------C-EEEccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCCCe
Confidence            754 4454  4888898542           1 22233344567788999998  66665554 444  45557766654


Q ss_pred             eeeeecccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996          212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      ..............|+|+|++++..+.+   ..|++||+.++..       .   .+.. ........|+| |.+|+.++
T Consensus       324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~---~Lt~-~~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------Q---VLTD-TFLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------E---EeCC-CCCCCCceECCCCCEEEEEE
Confidence            3322234455678999999998876543   3588889877531       1   2221 12234678999 99999988


Q ss_pred             CCCc---EEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          288 EDGM---VRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       288 ~dg~---i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      .++.   +.++++ ++.....+..|.+.+...+|+|
T Consensus       393 ~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        393 SQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             cCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            7764   677776 5666777888888899999987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.6e-15  Score=126.61  Aligned_cols=246  Identities=17%  Similarity=0.187  Sum_probs=163.9

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCC----
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG----  112 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~----  112 (451)
                      +..++  |++.-..+|+++.| ..|++|+-+..... .+......|+|++|-|. +..|++|+..| |.+|.....    
T Consensus       101 lr~~a--WhqH~~~fava~nd-dvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen  101 LRGVA--WHQHIIAFAVATND-DVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             eeeEe--echhhhhhhhhccC-cEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            44556  88877778888888 99999997764333 33445789999999994 56788888754 999986422    


Q ss_pred             cc----------eeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996          113 RL----------LKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (451)
Q Consensus       113 ~~----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (451)
                      ..          +....+| .+|++++|.+||..+++++. |..|.|||..++         ...++.  ....+.++-+
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg---------~~~pL~--~~glgg~slL  244 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG---------QKIPLI--PKGLGGFSLL  244 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC---------Cccccc--ccCCCceeeE
Confidence            11          1112344 78999999999999998876 568999999762         222222  2345677889


Q ss_pred             EEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCce
Q 012996          182 VIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH  260 (451)
Q Consensus       182 ~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  260 (451)
                      .|+|++  .++++++-|+..++|+.. +....+-.-..+.|...+|+|+|++|+..+. |.                   
T Consensus       245 kwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gs-------------------  302 (445)
T KOG2139|consen  245 KWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GS-------------------  302 (445)
T ss_pred             EEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CC-------------------
Confidence            999999  899999999999999544 3333333446679999999999988765442 11                   


Q ss_pred             eeeeeccCCcceeEEEEec-CCEEE-EEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996          261 IIGSLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (451)
Q Consensus       261 ~~~~~~~~~~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d  331 (451)
                               ..++++.|.. ...+. .++......+-|+..-....--+...+++.+++|+|.|.+||+.-..
T Consensus       303 ---------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  303 ---------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             ---------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence                     2233444433 11111 33333344444543211111112235789999999999999986443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=5e-15  Score=137.56  Aligned_cols=236  Identities=17%  Similarity=0.176  Sum_probs=155.2

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      ..|.++|.+.........+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+..|+|||+.|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            46778887655544444567789999999999999876643   359999998886543 33334556789999999887


Q ss_pred             E-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEc--CCCceee
Q 012996          138 I-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSL--LKGRLLR  213 (451)
Q Consensus       138 ~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~--~~~~~~~  213 (451)
                      + +.+.+|...+|.+..         ... ....+..+........|+|++  +.|+..+ .+|...+|.+  .++....
T Consensus       255 a~~~~~~g~~~Iy~~d~---------~~~-~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        255 AVALSRDGNSQIYTVNA---------DGS-GLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             EEEEccCCCceEEEEEC---------CCC-CcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEE
Confidence            6 567788877776532         111 123344455556677899998  5655444 4566666654  4444322


Q ss_pred             eeecccceeEEEECCCCCEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996          214 NIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (451)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d  289 (451)
                      ...........+|+|+|++++..+.++   .|++||+.++..       .   .+..+ .......|+| ++.|+.++.+
T Consensus       323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------~---~lt~~-~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        323 VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------T---ALTDT-TRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-------E---EccCC-CCccCceECCCCCEEEEEEec
Confidence            222233345678999999998776654   699999987541       1   22211 2346779999 8887777654


Q ss_pred             C---cEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          290 G---MVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       290 g---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      +   .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            4   3555566 46666677767778888888873

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=9.4e-17  Score=138.94  Aligned_cols=259  Identities=17%  Similarity=0.194  Sum_probs=195.7

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-ccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcch
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~  154 (451)
                      .|.+.|..|.|+..|..|++|+.|..|.+||...+.....+ .+|...|..-.|-|  +.+.+++++.||.+++=.+...
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            47899999999999999999999999999999998877666 67888888888888  5577999999999999877431


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----ccc---ceeEEEEC
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPS---VIDAIALD  227 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~---~i~~~~~~  227 (451)
                              ........+..|.++|.-++.-|+.. ..|.+++.|+.+.-+|++.+.+-..+.    ...   ...+++..
T Consensus       220 --------~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  220 --------GYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             --------cceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence                    22223456778999999999988775 789999999999999999876544443    222   57789999


Q ss_pred             CCCC-EEEEEeCCCcEEEEEccCCCCCCCCC---CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC--C
Q 012996          228 PAEH-VFYAGSRDGSIYIAALNAESPSTSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--H  300 (451)
Q Consensus       228 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~--~  300 (451)
                      |... .+++|+.|-.+++||.+.-.......   .+.+-.-.......|++++|+. +.-|+++-.|-.|+++.-..  |
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            9554 89999999999999987743221110   1111111123346799999997 66666667788899995432  2


Q ss_pred             ----------ceEEE-eecCCC--CeeEEEE-EecCceeeeccCCCCccccccCCCCCC
Q 012996          301 ----------NIVRM-FRLAKG--PVNNILV-VRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       301 ----------~~~~~-~~~~~~--~v~~l~~-s~~~~~l~~~s~d~~i~iw~~~~~~~~  345 (451)
                                ..+.. +++|..  .|..+-| -|...|+++||.-|.|.||+.++.++.
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence                      22333 677765  5777765 488999999999999999999987654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=3.2e-14  Score=117.06  Aligned_cols=227  Identities=19%  Similarity=0.242  Sum_probs=156.2

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC------CccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~g~i~vw~~~~~~~~~~~   77 (451)
                      .++.|.  |...+||+++.-+...+.+..   ..++..+.  ..--.+++|..|..      ...|.|||-.........
T Consensus        19 cFava~--~~Gfriyn~~P~ke~~~r~~~---~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el   91 (346)
T KOG2111|consen   19 CFAVAT--DTGFRIYNCDPFKESASRQFI---DGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL   91 (346)
T ss_pred             eEEEEe--cCceEEEecCchhhhhhhccc---cCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE
Confidence            345555  667899998764443222222   22222222  22233444433322      158999996566666666


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeeecccc--CCeeEEEEccCCcEEEE-eeCCCcEEEeeCcc
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHY--RAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLT  153 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~  153 (451)
                      ....+|.++.+.++  .|++.- .+.|+||... +.+.++.+....  ....+++-+.+..+|+. |-.-|.|.|-|+..
T Consensus        92 ~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   92 SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence            66789999999864  455544 4689999987 446666553222  22333333334444554 33468999999955


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc-EEEEEcCCCceeeeee---cccceeEEEECCC
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPA  229 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~  229 (451)
                      .         .......+..|...|.+++.+..|  ..++|+|..|+ |||||..+|..+..+.   ....|.+++|+|+
T Consensus       169 ~---------~~~~p~~I~AH~s~Iacv~Ln~~G--t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  169 T---------KPNAPSIINAHDSDIACVALNLQG--TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN  237 (346)
T ss_pred             c---------CcCCceEEEcccCceeEEEEcCCc--cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence            2         111345678899999999999988  89999999997 7899999999999987   4678999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCC
Q 012996          230 EHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      ..+|+++++.|++++|.++...
T Consensus       238 ~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ccEEEEEcCCCeEEEEEeecCC
Confidence            9999999999999999997743

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=7.3e-16  Score=135.09  Aligned_cols=220  Identities=10%  Similarity=0.158  Sum_probs=155.8

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceee-----eecCCCCeeEEEE-----CCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEV-----KSLPAEPIKPIAA-----NSHGTYIAGGGQSGDIYMWEVASGRLL  115 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-----~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~  115 (451)
                      ++-.|.+|+-.-.  ..+.+|+........     +........|-+|     .|.+--++.|-.-|.|.+.|....+..
T Consensus       131 ~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~s  208 (636)
T KOG2394|consen  131 QSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVS  208 (636)
T ss_pred             ccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHH
Confidence            4444555444333  478888877432221     1122334455555     345667888888899999987663332


Q ss_pred             eeec----cccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhh-----------------hcccccceecccC
Q 012996          116 KKWH----AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECES-----------------QRASHLYLHSFTG  173 (451)
Q Consensus       116 ~~~~----~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----------------~~~~~~~~~~~~~  173 (451)
                      +.+.    -....|+|+.|-| +...++.+-.+|.+.+||..-.......                 ......++..+.-
T Consensus       209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~  288 (636)
T KOG2394|consen  209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI  288 (636)
T ss_pred             HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe
Confidence            2221    1347899999999 5566777788999999987321111000                 0011123333344


Q ss_pred             CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q 012996          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP  252 (451)
Q Consensus       174 ~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (451)
                      -.+.|..++|++++  .+|++.+.||.++|||+.+.+++..+. .-+...|++|+|||+++++|+.|..|.+|.+...  
T Consensus       289 ~~g~in~f~FS~DG--~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--  364 (636)
T KOG2394|consen  289 GEGSINEFAFSPDG--KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--  364 (636)
T ss_pred             ccccccceeEcCCC--ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc--
Confidence            45688899999988  999999999999999999888777666 5678999999999999999999999999999886  


Q ss_pred             CCCCCCceeeeeeccCCcceeEEEEe
Q 012996          253 STSSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                             +.+..-++|..+|+.++|.
T Consensus       365 -------RVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  365 -------RVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             -------eEEEeccccccceeeEeec
Confidence                   6788889999999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=9.8e-15  Score=135.47  Aligned_cols=235  Identities=13%  Similarity=0.128  Sum_probs=156.7

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--CccEEEEECCCCceeeeecCCCCeeEEEECC
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAANS   90 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~   90 (451)
                      ..|.+||...+.. +.+..   +...+....  |+|+|+.++..+..  +..|.+|++.+++........+.+....|+|
T Consensus       179 ~~l~~~d~dg~~~-~~lt~---~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP  252 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHR---SPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP  252 (429)
T ss_pred             eeEEEEcCCCCCC-EEeec---CCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence            3699999875443 33332   234566666  99999999865422  2579999998876554444445567889999


Q ss_pred             CCcEEEEe-ccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC-CcEEEe--eCcchhhhhhhhccc
Q 012996           91 HGTYIAGG-GQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED-GCVRIW--SLLTVFEECESQRAS  164 (451)
Q Consensus        91 ~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vw--d~~~~~~~~~~~~~~  164 (451)
                      ||+.|+.. +.+|  .|++||+.+++... +..+...+....|+|||+.|+..+.+ +...+|  |+.++          
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----------  321 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----------  321 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------
Confidence            99988764 4444  49999998876544 33344567889999999988766654 455555  44321          


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCC---CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCc
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                        ....+..+........|+|++  ++++..+.+   ..|.+||+.++... .+..........|+|+|+.|+.++.++.
T Consensus       322 --~~~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        322 --APQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             --CeEEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence              112222233445567899988  666665433   35888999887643 3332223456789999999999887764


Q ss_pred             ---EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          242 ---IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       242 ---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                         ++++++....          ...+.+|.+.+...+|+|
T Consensus       397 ~~~l~~~~~~G~~----------~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        397 GSVLNLVSTDGRF----------KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ceEEEEEECCCCC----------eEECccCCCCcCCcccCC
Confidence               6777775532          445667788888888887

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=3.6e-15  Score=125.86  Aligned_cols=228  Identities=16%  Similarity=0.206  Sum_probs=165.5

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc----ceeeeccccCCeeEEEEccC-CcEEEEeeCC--CcEEEeeCc
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSED-GSFLISGSED--GCVRIWSLL  152 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d--g~i~vwd~~  152 (451)
                      ..+|..++..  ...|++|-.+|.+.+|..+.+.    .+..+..+ ..+..+.-++. ...+++||..  ..+.+||+.
T Consensus       105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            4455555554  3457777889999999988543    23333333 45666666664 4456668888  789999997


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECCCC
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPAE  230 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~  230 (451)
                      +..............+.  -.-+-.++++.|.+......|++++.-+.+++||.+.+ +++..+. ...+++++...|.+
T Consensus       182 ~~~qiw~aKNvpnD~L~--LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g  259 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLG--LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG  259 (412)
T ss_pred             cceeeeeccCCCCcccc--ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence            64221111111100000  01233567788888744489999999999999999876 4666676 67899999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      +++++|...|.+..||++.+.        .....+.+..+.|+++..+| ..+++++|-|..|||+|+.+.+++..... 
T Consensus       260 n~Iy~gn~~g~l~~FD~r~~k--------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-  330 (412)
T KOG3881|consen  260 NFIYTGNTKGQLAKFDLRGGK--------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-  330 (412)
T ss_pred             cEEEEecccchhheecccCce--------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-
Confidence            999999999999999999974        33445888899999999999 89999999999999999999887776543 


Q ss_pred             CCCeeEEEEEec
Q 012996          310 KGPVNNILVVRR  321 (451)
Q Consensus       310 ~~~v~~l~~s~~  321 (451)
                      ...+++|.+.++
T Consensus       331 Ks~lt~il~~~~  342 (412)
T KOG3881|consen  331 KSRLTFILLRDD  342 (412)
T ss_pred             hccccEEEecCC
Confidence            456777777654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=2.1e-15  Score=127.26  Aligned_cols=246  Identities=10%  Similarity=0.129  Sum_probs=185.1

Q ss_pred             CCCeeEEEECCCCc--EEEEeccCCCEEEEEcCCCcceeee------ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996           80 AEPIKPIAANSHGT--YIAGGGQSGDIYMWEVASGRLLKKW------HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        80 ~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      ...|..++|..+++  .+...+.+-.+..+.+....+...+      ....++|..++..  +..|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            45788888865543  3444446666777776665544432      3445677777665  346888899999999998


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC--CcEEEEEcCCCceeeeee----------ccc
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--RTCKVWSLLKGRLLRNIV----------FPS  219 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~----------~~~  219 (451)
                      ..+..       ....+..+..+ ..+..+.-++... .++++|+..  ..+.+||+...+.+..-.          .+-
T Consensus       133 k~~d~-------hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  133 KSGDL-------HSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             cCCcc-------ccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence            64211       01112222222 3344444444332 677789988  889999998876555432          234


Q ss_pred             ceeEEEECCC--CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          220 VIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       220 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      .++++.|-|.  ...|++++.-+.+++||.+.+.        +++..+.-...+++++...| ++++++|..-|.+..||
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeEeccccCcceeeeecCCCcEEEEecccchhheec
Confidence            5778889887  8899999999999999999875        77778888889999999999 99999999999999999


Q ss_pred             CCCCceEEE-eecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          297 PITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       297 ~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      .+.++.+.. +.+..+.|++|..+|.+++||+++-|..+||+|+.+..+
T Consensus       276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            999998887 888899999999999999999999999999999998444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1e-14  Score=136.01  Aligned_cols=233  Identities=17%  Similarity=0.113  Sum_probs=157.1

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      ..|.+||...........+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +..+.+...+..|+|||+.|
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            57999998766555555566789999999999999887643   459999998876533 33344455678999999877


Q ss_pred             E-EeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCc--EEEEEcCCCce
Q 012996          138 I-SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT--CKVWSLLKGRL  211 (451)
Q Consensus       138 ~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~  211 (451)
                      + +.+.+|  .|.+||+.++           . ...+..+.......+|++++  +.|+.++ .+|.  |+++|+.+++.
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g-----------~-~~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSR-----------Q-LTRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             EEEEeCCCCceEEEEECCCC-----------C-eEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCe
Confidence            5 445555  5888998542           1 23344454455678899988  6666554 4554  66677766654


Q ss_pred             eeeeecccceeEEEECCCCCEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996          212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      .............+|+|+|++++..+.++   .|++||+.++..       .   .+. +........|+| +++++..+
T Consensus       329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-------~---~Lt-~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-------R---TLT-PGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-------E---ECC-CCCCCCCceECCCCCEEEEEE
Confidence            33222333455789999999998765443   689999876531       1   222 222345678999 88777766


Q ss_pred             CC---CcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          288 ED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       288 ~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      .+   +.|.++++. +.....+..+.+.+...+|+|
T Consensus       398 ~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        398 REGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            53   358888874 555666666667788888876

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.69  E-value=2e-14  Score=125.54  Aligned_cols=279  Identities=14%  Similarity=0.169  Sum_probs=183.3

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---------------
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---------------  101 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------  101 (451)
                      -.+..+.  |||.|.+|++...  ..|.+|............| ..|..+.|+|.++||.+-+..               
T Consensus        33 ~p~~~~~--~SP~G~~l~~~~~--~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          33 WPVAYVS--ESPLGTYLFSEHA--AGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cchhhee--ecCcchheehhhc--cceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            4455556  9999999999888  5899999887775444444 679999999999999986543               


Q ss_pred             CCEEEEEcCCCcceeeeccccCC--ee-EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          102 GDIYMWEVASGRLLKKWHAHYRA--VT-CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       102 g~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      ..+.+||+.+|..+..+.....+  .+ -+.|+-++++++-... ..+.|+++.....        ..+.+.+.  ...|
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~--------~~p~~~lr--~~gi  176 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIE--------EHPFKNLR--PVGI  176 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccc--------cCchhhcc--ccce
Confidence            34999999999999998776655  55 6889988888775533 3799999622100        11111111  2345


Q ss_pred             eEEEEeecCCeeEEEE-----eeCCCcEEEEEcCCCceeeeee-------------------------------------
Q 012996          179 TDIVIGYGGVSATIVS-----ASEDRTCKVWSLLKGRLLRNIV-------------------------------------  216 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~-------------------------------------  216 (451)
                      ....|+|.++...|+.     .+.++.+++|.+..++.+....                                     
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn  256 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN  256 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence            5555665543333332     3445566666665443332222                                     


Q ss_pred             ----------------cccceeEEEECCCCCEEEEEe--CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996          217 ----------------FPSVIDAIALDPAEHVFYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       217 ----------------~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                                      ..++|...+|.|.++.+++.+  .+-.+.++|++..-            .+......=+.+.|+
T Consensus       257 Lyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------------~~~~Pe~~rNT~~fs  324 (561)
T COG5354         257 LYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------------RFYFPEQKRNTIFFS  324 (561)
T ss_pred             EEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce------------EEecCCccccccccc
Confidence                            234566666666555554433  44556666665531            222234455667899


Q ss_pred             c-CCEEEEEcCC---CcEEEEeCCCCceEE-EeecCCCCeeEEEEEecCceeeecc------CCCCccccccCCCCCC
Q 012996          279 T-GDLLISGSED---GMVRVWDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGS------FSNPHTSSRRHGSQLP  345 (451)
Q Consensus       279 ~-~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~s------~d~~i~iw~~~~~~~~  345 (451)
                      | +++++.++-|   |.|-+||......+. .+.+.  ..+-+.|+||++++.+..      .|+.+.+|++.+....
T Consensus       325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             CcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            9 9999988765   679999987765544 56553  346678999999986654      4788999999887654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.69  E-value=6.5e-15  Score=132.45  Aligned_cols=281  Identities=11%  Similarity=0.094  Sum_probs=176.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-----
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-----   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-----   78 (451)
                      ++.+++ .||.|.++|+.+++.+.+++...    ....++  ++++|++++++...++.+.++|..+.+......     
T Consensus        50 ~~yv~~-rdg~vsviD~~~~~~v~~i~~G~----~~~~i~--~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~  122 (369)
T PF02239_consen   50 YLYVAN-RDGTVSVIDLATGKVVATIKVGG----NPRGIA--VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP  122 (369)
T ss_dssp             EEEEEE-TTSEEEEEETTSSSEEEEEE-SS----EEEEEE--E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred             EEEEEc-CCCeEEEEECCcccEEEEEecCC----CcceEE--EcCCCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence            355556 79999999999999999997643    334555  999999999998777999999999877654332     


Q ss_pred             ---CCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCccee-eeccccCCeeEEEEccCCcEEEEe-eCCCcEEEeeCc
Q 012996           79 ---PAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLL  152 (451)
Q Consensus        79 ---~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~  152 (451)
                         ....+..|..+|....++.. -..+.|.+.|....+.+. .............|+|++++++.+ ..+..|-++|..
T Consensus       123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence               23467888888988855554 445788888877665442 222344567789999999987765 446689999986


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEE-------EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEE
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDI-------VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIA  225 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~  225 (451)
                      +.........       .-..|..++..+       .|...+.+...++.-....+.+||..+.+.+..+...+...-+.
T Consensus       203 ~~k~v~~i~~-------g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~  275 (369)
T PF02239_consen  203 TGKLVALIDT-------GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK  275 (369)
T ss_dssp             TTEEEEEEE--------SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE
T ss_pred             cceEEEEeec-------cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceee
Confidence            5321110000       012233333322       23333322333333334466789999999999999666668889


Q ss_pred             ECCCCCEEEEE----eCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEEEEcC--CCcEEEEeC
Q 012996          226 LDPAEHVFYAG----SRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSE--DGMVRVWDP  297 (451)
Q Consensus       226 ~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~--dg~i~iwd~  297 (451)
                      .+|+++++++.    ...+.|.++|..+.         +.+..+.. -...+..+.|++ |+.+..+..  +|.|.+||.
T Consensus       276 thP~s~~vwvd~~~~~~~~~v~viD~~tl---------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  276 THPDSRYVWVDTFLNPDADTVQVIDKKTL---------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             --TT-SEEEEE-TT-SSHT-EEEEECCGT---------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             cCCCCccEEeeccCCCCCceEEEEECcCc---------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            99999999998    44579999999986         33334332 223589999999 886666544  346999999


Q ss_pred             CCCceEEEee
Q 012996          298 ITHNIVRMFR  307 (451)
Q Consensus       298 ~~~~~~~~~~  307 (451)
                      .+.+.+.++.
T Consensus       347 ~Tl~~~~~i~  356 (369)
T PF02239_consen  347 KTLKEKKRIP  356 (369)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            9999999987

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.4e-14  Score=134.64  Aligned_cols=238  Identities=14%  Similarity=0.105  Sum_probs=152.1

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEEC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN   89 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~   89 (451)
                      ...|.+||.. |.....+..   +...+....  |+|+|+.++.++..+  ..|.+||+.+++........+.+.+.+|+
T Consensus       175 ~~~L~~~D~d-G~~~~~l~~---~~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S  248 (427)
T PRK02889        175 RYQLQISDAD-GQNAQSALS---SPEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS  248 (427)
T ss_pred             ccEEEEECCC-CCCceEecc---CCCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence            4567788864 544444433   234455666  999999998776432  46999999888765444344567789999


Q ss_pred             CCCcEEE-EeccCCCEEEE--EcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccc
Q 012996           90 SHGTYIA-GGGQSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        90 ~~~~~l~-~~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |||+.|+ +.+.+|...||  |+..+. ...+..+........|+|||+.|+..+. +|...+|.+...         ..
T Consensus       249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~---------~g  318 (427)
T PRK02889        249 PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS---------GG  318 (427)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC---------CC
Confidence            9999886 45667775555  444443 4455556566677899999998876554 466777765321         11


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCC--
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--  240 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--  240 (451)
                      . ...+..+........|+|++  ++++..+.++   .|.+||+.+++... +..........|+|+++.|+.++.++  
T Consensus       319 ~-~~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        319 A-AQRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             c-eEEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCC
Confidence            1 11111122233456899988  6777666544   69999998876543 33333456789999999988876544  


Q ss_pred             -cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                       .+++.+....          ....+..+.+.+...+|+|
T Consensus       395 ~~l~~~~~~g~----------~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        395 SVLAAVSSDGR----------IKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             EEEEEEECCCC----------ceEEeecCCCCCCCCccCC
Confidence             3555555332          2333444566777778876

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.9e-14  Score=134.23  Aligned_cols=235  Identities=14%  Similarity=0.114  Sum_probs=153.3

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEECC
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANS   90 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~   90 (451)
                      ..|.+||.. +...+.+..+   ...+....  |+|+|+.++.++..+  ..|.+||+.++.........+...+.+|+|
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~---~~~v~~p~--wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRS---AEPILSPA--WSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCC-CCCceEeecC---CCcccccc--CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence            469999985 4444444433   34456666  999999998876432  469999998877654444445566889999


Q ss_pred             CCcEEEE-eccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCc--EEEeeCcchhhhhhhhccc
Q 012996           91 HGTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRAS  164 (451)
Q Consensus        91 ~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~  164 (451)
                      ||+.|+. .+.+|  .|++||+.+++.. .+..+.......+|+|||+.|+.++. +|.  |.++++.++         .
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~  327 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S  327 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C
Confidence            9997764 34455  5999999887643 45555555678899999998887664 455  555565331         1


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC--
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--  239 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  239 (451)
                         ...+..+.......+|+|++  +.++..+.++   .|.+||+.+++.. .+..........|+|+|+.++..+.+  
T Consensus       328 ---~~~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g  401 (433)
T PRK04922        328 ---AERLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGG  401 (433)
T ss_pred             ---eEEeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCC
Confidence               11111222334467899998  6666554332   6999999887654 33333345567999999988776653  


Q ss_pred             -CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                       +.|+++++....          ...+..+.+.+...+|+|
T Consensus       402 ~~~L~~~~~~g~~----------~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        402 RGVLAAVSTDGRV----------RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ceEEEEEECCCCc----------eEEcccCCCCCCCCccCC
Confidence             357777775432          333444556667777765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=5.8e-14  Score=131.19  Aligned_cols=232  Identities=13%  Similarity=0.013  Sum_probs=157.2

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      ..|.+||.+.........+...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+|||+.|
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            5899999877766666667789999999999999887653   467999999887653 344566677889999999877


Q ss_pred             E-EeeCCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCC--cEEEEEcCCCce
Q 012996          138 I-SGSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL  211 (451)
Q Consensus       138 ~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~  211 (451)
                      + +.+.++.  |.+||+.++            ....+..+........|+|++  +.++..+ .+|  .|+++|+..+..
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~------------~~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSG------------TTTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             EEEEecCCCceEEEEECCCC------------ceEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCe
Confidence            5 5555655  666677441            123344555566778999998  6666554 333  688889876654


Q ss_pred             eeeeecccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996          212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      .........+....|+|+|+.|+....+   ..|.+||+....          ...+. ....+....|+| ++.|+..+
T Consensus       327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----------~~~lt-~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----------ERILT-SGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------eEecc-CCCCCCCCeECCCCCEEEEEE
Confidence            4333345556778999999999876643   367888875532          11121 123467789999 88777654


Q ss_pred             CC------CcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          288 ED------GMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       288 ~d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      .+      ..+.++|+..+.. ..+.. .+.+...+|+|
T Consensus       396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP  432 (435)
T ss_pred             ccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence            42      2577888765544 44442 44566667765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=1.6e-14  Score=118.04  Aligned_cols=132  Identities=16%  Similarity=0.205  Sum_probs=100.5

Q ss_pred             cEEEEEcCC-Cceeeeee--cccceeEEEECCCCCEEEEE--eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996          200 TCKVWSLLK-GRLLRNIV--FPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (451)
Q Consensus       200 ~i~iwd~~~-~~~~~~~~--~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  274 (451)
                      ...+|.++. +.....+.  ..++|.+++|+|+++.|++.  ..++.|.+||++.          ..+..+  +...++.
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------~~i~~~--~~~~~n~  105 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------KKIFSF--GTQPRNT  105 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------cEeEee--cCCCceE
Confidence            355555532 23344444  34579999999999987665  3567999999963          334444  3567889


Q ss_pred             EEEec-CCEEEEEcC---CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC------CCCccccccCCCCC
Q 012996          275 LAYST-GDLLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQL  344 (451)
Q Consensus       275 ~~~~~-~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~------d~~i~iw~~~~~~~  344 (451)
                      +.|+| |++|++++.   .|.|.+||+++.+.+.+....  .++.++|+|||++|++++.      |+.++||+..|..+
T Consensus       106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            99999 999999875   467999999999998887643  4789999999999998874      78899999988654


Q ss_pred             C
Q 012996          345 P  345 (451)
Q Consensus       345 ~  345 (451)
                      .
T Consensus       184 ~  184 (194)
T PF08662_consen  184 Y  184 (194)
T ss_pred             E
Confidence            3

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.6e-13  Score=128.25  Aligned_cols=204  Identities=14%  Similarity=0.047  Sum_probs=140.8

Q ss_pred             CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      ..|.++|. .+.....+..|...+.+..|+|||+.|+..+.   +..|.+||+.++         .   ...+..+.+.+
T Consensus       182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---------~---~~~l~~~~g~~  248 (435)
T PRK05137        182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---------Q---RELVGNFPGMT  248 (435)
T ss_pred             eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------c---EEEeecCCCcc
Confidence            36889997 45555667778889999999999999887654   468999999652         1   12233455567


Q ss_pred             eEEEEeecCCeeEEEEeeCCCc--EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCC
Q 012996          179 TDIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPS  253 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~  253 (451)
                      ....|+|++. .++++.+.++.  |++||+.++.......+........|+|+|+.++..+. +|  .|+++|+....  
T Consensus       249 ~~~~~SPDG~-~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--  325 (435)
T PRK05137        249 FAPRFSPDGR-KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--  325 (435)
T ss_pred             cCcEECCCCC-EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--
Confidence            7889999983 34456666665  77779888766544345556677899999998887664 33  68888876643  


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                              ...+..+...+....|+| ++.|+..+.+   ..|.+||+..+. ...+.. ...+....|+|||+.|+..+
T Consensus       326 --------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        326 --------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             --------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEE
Confidence                    222333345567788999 8888876543   358888976554 333432 23577889999999987765


Q ss_pred             CC
Q 012996          330 FS  331 (451)
Q Consensus       330 ~d  331 (451)
                      .+
T Consensus       396 ~~  397 (435)
T PRK05137        396 QT  397 (435)
T ss_pred             cc
Confidence            43

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.8e-13  Score=121.36  Aligned_cols=275  Identities=11%  Similarity=0.150  Sum_probs=183.3

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .++|||. ..-.|++||+.......  ..|. ....|....  .+.|-...+.-..| .+|.+......-...+  -+..
T Consensus        65 Y~lAtG~-YKP~ikvydlanLSLKF--ERhl-Dae~V~fei--LsDD~SK~v~L~~D-R~IefHak~G~hy~~R--IP~~  135 (703)
T KOG2321|consen   65 YLLATGT-YKPQIKVYDLANLSLKF--ERHL-DAEVVDFEI--LSDDYSKSVFLQND-RTIEFHAKYGRHYRTR--IPKF  135 (703)
T ss_pred             EEEEecc-cCCceEEEEcccceeee--eecc-cccceeEEE--eccchhhheEeecC-ceeeehhhcCeeeeee--cCcC
Confidence            5789999 88999999987654432  2222 123333333  34444443333444 5555543222111111  2233


Q ss_pred             eeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           83 IKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        83 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      -..++++. ...++++ +....|+-+++..|..+..+....+.++++..++-..+|++|+.+|.|-.||.+.........
T Consensus       136 GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             CccccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence            45666654 3444444 444579999999999999998888999999999988899999999999999997633222211


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec--ccceeEEEECCCC-CEEEEEeC
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE-HVFYAGSR  238 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~  238 (451)
                      ................|+++.|..+|  -.+++|+.+|.+.|||+++.+++..-.|  ..+|..+.|.+.+ .--++...
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~g--L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D  292 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDG--LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD  292 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCc--eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence            11111111111223349999999887  8999999999999999999998877765  4578889997752 22333455


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      ...++|||-.++++         ...+ .....++.+++-| +.+++++-.++.+..|=+..
T Consensus       293 k~~~kiWd~~~Gk~---------~asi-Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  293 KRILKIWDECTGKP---------MASI-EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             hHHhhhcccccCCc---------eeec-cccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            67899999988753         2222 2345699999999 88999998888887776554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.60  E-value=1.5e-12  Score=119.78  Aligned_cols=303  Identities=15%  Similarity=0.101  Sum_probs=187.5

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      .+++++ .+|.|..+|..+|+.+..+.........       ...++..+++++.+ |.+..+|..+++..........+
T Consensus        67 ~v~v~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~-------p~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~  137 (377)
T TIGR03300        67 KVYAAD-ADGTVVALDAETGKRLWRVDLDERLSGG-------VGADGGLVFVGTEK-GEVIALDAEDGKELWRAKLSSEV  137 (377)
T ss_pred             EEEEEC-CCCeEEEEEccCCcEeeeecCCCCcccc-------eEEcCCEEEEEcCC-CEEEEEECCCCcEeeeeccCcee
Confidence            466677 7899999999999998776544322111       22345666666666 99999999998887765544433


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe-----eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-----TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      .+.-.. .+..++.++.+|.++.||..+|+.+..+......+     .+....  +..++.+..+|.+..+|+.++....
T Consensus       138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence            321111 24567777889999999999999887765332211     111121  2467788888999999987653221


Q ss_pred             hhhcccccceecccCCcCcee-EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996          159 ESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (451)
                      ............. .+...+. +..+ . +  ..++.++.+|.++.||..+++.+....... ....  ...+..+++++
T Consensus       215 ~~~~~~~~g~~~~-~~~~~~~~~p~~-~-~--~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p--~~~~~~vyv~~  286 (377)
T TIGR03300       215 EQRVALPKGRTEL-ERLVDVDGDPVV-D-G--GQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGP--AVDDNRLYVTD  286 (377)
T ss_pred             eeccccCCCCCch-hhhhccCCccEE-E-C--CEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCc--eEeCCEEEEEC
Confidence            1000000000000 0000000 0111 1 2  578888889999999999998877665322 1111  12567888889


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (451)
                      .+|.++.+|..++....         ..... .....+.... +..+++++.+|.|.++|..+++.+.++..+..++..-
T Consensus       287 ~~G~l~~~d~~tG~~~W---------~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~s  356 (377)
T TIGR03300       287 ADGVVVALDRRSGSELW---------KNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASP  356 (377)
T ss_pred             CCCeEEEEECCCCcEEE---------ccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccC
Confidence            99999999998774221         11111 1111111122 7889999999999999999999999988766544433


Q ss_pred             EEEecCceeeeccCCCCcccc
Q 012996          317 LVVRRPLYLNLGSFSNPHTSS  337 (451)
Q Consensus       317 ~~s~~~~~l~~~s~d~~i~iw  337 (451)
                      -...++ .|+.++.||.+..+
T Consensus       357 p~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       357 PVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEECC-EEEEEeCCceEEEe
Confidence            333344 47788889887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.59  E-value=4.2e-12  Score=111.30  Aligned_cols=284  Identities=14%  Similarity=0.184  Sum_probs=195.8

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEE
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAA   88 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~   88 (451)
                      +..+.+||+.+|..+..+.....+...=-.+.  |+.+.+++|-...  ..+.|+++ ++.....   ......|....|
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k--~s~~D~y~ARvv~--~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi  181 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLK--FSIDDKYVARVVG--SSLYIHEI-TDNIEEHPFKNLRPVGILDFSI  181 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceee--eeecchhhhhhcc--CeEEEEec-CCccccCchhhccccceeeEEe
Confidence            34699999999999998876554311111445  9999999887755  58999997 4433322   223467888999


Q ss_pred             CCCC--cEEEE-----eccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee-----------CCCcEEEee
Q 012996           89 NSHG--TYIAG-----GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-----------EDGCVRIWS  150 (451)
Q Consensus        89 ~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----------~dg~i~vwd  150 (451)
                      +|.+  ..||.     ++..+.+++|.+..+..+.+..-....=..+.|.+.|++|+.--           ....+.+++
T Consensus       182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~  261 (561)
T COG5354         182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR  261 (561)
T ss_pred             cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence            9964  33443     35678899999987776655432333334688999888776321           124577777


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      +..          ..  +.......++|.+.+|.|.+.+--+++|..+..+.++|++..  +.....+..=+.+.|+|.+
T Consensus       262 ~~e----------~~--i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~  327 (561)
T COG5354         262 ITE----------RS--IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHE  327 (561)
T ss_pred             ecc----------cc--cceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcc
Confidence            742          11  111225678999999999886555666778999999999866  3334355566778999999


Q ss_pred             CEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc------CCCcEEEEeCCCC
Q 012996          231 HVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS------EDGMVRVWDPITH  300 (451)
Q Consensus       231 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~------~dg~i~iwd~~~~  300 (451)
                      +++++++.|   |.|.+||.....        ..+..+.+  ...+-+.|+| +.++.+..      .|..|.|||+...
T Consensus       328 r~il~agF~nl~gni~i~~~~~rf--------~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         328 RYILFAGFDNLQGNIEIFDPAGRF--------KVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cEEEEecCCccccceEEeccCCce--------EEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            999997765   579999987752        44444544  3445578999 88877764      3788999997643


Q ss_pred             ceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      ...        ..+.+.|.|.|++..+.|.+.
T Consensus       398 ~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         398 KVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             hhh--------hhhhccccCCcccceeeccCC
Confidence            322        567788999898888877665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=1.8e-11  Score=110.66  Aligned_cols=289  Identities=16%  Similarity=0.199  Sum_probs=180.4

Q ss_pred             CCeEEEEC--ccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---CCccEEEEECCCC--ceeee---ecCCCC
Q 012996           13 TGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---SSGSILYWSWSKP--QVEVK---SLPAEP   82 (451)
Q Consensus        13 g~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~g~i~vw~~~~~--~~~~~---~~~~~~   82 (451)
                      +.|.+|++  ++++... ... .........++  ++|++++|.++..   ++|.|..|.+...  .+...   ......
T Consensus        13 ~gI~~~~~d~~~g~l~~-~~~-~~~~~~Ps~l~--~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTL-VQT-VAEGENPSWLA--VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS   88 (345)
T ss_dssp             TEEEEEEEETTTTEEEE-EEE-EEESSSECCEE--E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred             CcEEEEEEcCCCCCceE-eee-ecCCCCCceEE--EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence            78999988  4444332 221 11223334455  8999999988866   4589999998764  33222   114556


Q ss_pred             eeEEEECCCCcEEEEecc-CCCEEEEEcCC-Ccceee---ec----------cccCCeeEEEEccCCcEEEEeeC-CCcE
Q 012996           83 IKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GRLLKK---WH----------AHYRAVTCLVFSEDGSFLISGSE-DGCV  146 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~s~~~-dg~i  146 (451)
                      ...++++|++++|+++.. +|.|.++++.. +.+...   +.          .......++.|+|+++++++... ...|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            678999999999988864 78999999976 433222   11          12345689999999998887643 3479


Q ss_pred             EEeeCcchhhhhhhhcccccceecc-cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC--CCc--eeeeee-c---
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL--KGR--LLRNIV-F---  217 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~--~~~~~~-~---  217 (451)
                      .+|++......       ......+ .........++|++++. ...++.-.++.|.++++.  ++.  .+..+. .   
T Consensus       169 ~~~~~~~~~~~-------l~~~~~~~~~~G~GPRh~~f~pdg~-~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  169 YVYDIDDDTGK-------LTPVDSIKVPPGSGPRHLAFSPDGK-YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             EEEEE-TTS-T-------EEEEEEEECSTTSSEEEEEE-TTSS-EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             EEEEEeCCCce-------EEEeeccccccCCCCcEEEEcCCcC-EEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            99998552110       1011111 12344568899999883 334455678889999988  442  222222 1   


Q ss_pred             ---ccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-CCCc
Q 012996          218 ---PSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGM  291 (451)
Q Consensus       218 ---~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~dg~  291 (451)
                         ......++++|++++|+++.. .+.|.+|+++....     ....+..........+.++++| +++|+++. .++.
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence               125778999999999998764 56899999954321     1234444444455689999999 99888876 4668


Q ss_pred             EEEEeC--CCCceEEEee-cCCCCeeEEEE
Q 012996          292 VRVWDP--ITHNIVRMFR-LAKGPVNNILV  318 (451)
Q Consensus       292 i~iwd~--~~~~~~~~~~-~~~~~v~~l~~  318 (451)
                      |.+|++  .+|.+...-. ..-....||.|
T Consensus       316 v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  316 VSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            999866  5666554432 22345566655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=2.3e-13  Score=111.28  Aligned_cols=150  Identities=13%  Similarity=0.176  Sum_probs=109.3

Q ss_pred             eEEEECCCCcEEEEecc----------CCCEEEEEcCC-Ccceeeecc-ccCCeeEEEEccCCcEEEEe--eCCCcEEEe
Q 012996           84 KPIAANSHGTYIAGGGQ----------SGDIYMWEVAS-GRLLKKWHA-HYRAVTCLVFSEDGSFLISG--SEDGCVRIW  149 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~--~~dg~i~vw  149 (451)
                      ..+.|+|+|.+|++-..          -|...+|.++. +.....+.- ..++|.+++|+|+|+.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999988765432          13355555522 233334432 34579999999999987654  457799999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC---CCcEEEEEcCCCceeeeeecccceeEEEE
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLLRNIVFPSVIDAIAL  226 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~i~~~~~  226 (451)
                      |++            ...+..+  +...+..+.|+|+|  +++++++.   .|.|.+||.++.+.+....+.. +..++|
T Consensus        89 d~~------------~~~i~~~--~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~W  151 (194)
T PF08662_consen   89 DVK------------GKKIFSF--GTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEW  151 (194)
T ss_pred             cCc------------ccEeEee--cCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEE
Confidence            993            2233333  35677889999999  88888774   4679999999988888877664 689999


Q ss_pred             CCCCCEEEEEeC------CCcEEEEEccCC
Q 012996          227 DPAEHVFYAGSR------DGSIYIAALNAE  250 (451)
Q Consensus       227 ~~~~~~l~~~~~------dg~i~i~d~~~~  250 (451)
                      +|+|++|++++.      |+.++||+....
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999999999874      678999998653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=4.7e-11  Score=100.92  Aligned_cols=301  Identities=15%  Similarity=0.189  Sum_probs=196.0

Q ss_pred             CeEEEeecCCC---CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--CccEEEEECCC--Cce
Q 012996            1 MELLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--SGSILYWSWSK--PQV   73 (451)
Q Consensus         1 ~e~~l~s~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--~g~i~vw~~~~--~~~   73 (451)
                      |...+..|++.   +..|.+|++.+..-..............+.++  |+|+++.|.++..+  .|.|.-|.++.  +..
T Consensus         1 m~~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L   78 (346)
T COG2706           1 MKQTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL   78 (346)
T ss_pred             CceEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence            44444444445   77899999884333323333334556667777  99999999888766  58899888875  454


Q ss_pred             eeee---cCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCC-Cccee--eeccccCC----------eeEEEEccCCcE
Q 012996           74 EVKS---LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GRLLK--KWHAHYRA----------VTCLVFSEDGSF  136 (451)
Q Consensus        74 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~  136 (451)
                      ....   ....+...++++++|++++++.. .|.|.++-++. |.+..  ..-.|.+.          +....+.|++++
T Consensus        79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~  158 (346)
T COG2706          79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY  158 (346)
T ss_pred             EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence            4332   23455589999999999998865 47899999865 43322  12235444          888999999999


Q ss_pred             EEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCC-ce-
Q 012996          137 LISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKG-RL-  211 (451)
Q Consensus       137 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~-~~-  211 (451)
                      |++...  | .|.+|++..+....       .....+ .....-..|.|+|++  ++.+. +-.+++|.+|..... .. 
T Consensus       159 l~v~DLG~D-ri~~y~~~dg~L~~-------~~~~~v-~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~  227 (346)
T COG2706         159 LVVPDLGTD-RIFLYDLDDGKLTP-------ADPAEV-KPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKF  227 (346)
T ss_pred             EEEeecCCc-eEEEEEcccCcccc-------cccccc-CCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceE
Confidence            988754  4 79999996432110       011111 334456789999998  55554 446899999998763 22 


Q ss_pred             --eeeee-------cccceeEEEECCCCCEEEEEeCC-CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C
Q 012996          212 --LRNIV-------FPSVIDAIALDPAEHVFYAGSRD-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G  280 (451)
Q Consensus       212 --~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  280 (451)
                        ++.+.       ......++.++|+|++|+++... ..|.+|.+......     ...+.....+....+...+++ +
T Consensus       228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC
Confidence              22221       24567789999999999998543 36888877664311     133444444556678899999 9


Q ss_pred             CEEEEEcCCC-cEEEEeC--CCCceEEEee-cCCCCeeEEEEE
Q 012996          281 DLLISGSEDG-MVRVWDP--ITHNIVRMFR-LAKGPVNNILVV  319 (451)
Q Consensus       281 ~~l~s~~~dg-~i~iwd~--~~~~~~~~~~-~~~~~v~~l~~s  319 (451)
                      ++|+++..++ +|.+|..  .+|++-.... .......|+.|.
T Consensus       303 ~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         303 RFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            9999998754 5888765  4565544333 222344555553

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.57  E-value=4.3e-13  Score=109.29  Aligned_cols=270  Identities=17%  Similarity=0.144  Sum_probs=178.4

Q ss_pred             CCCeEEEECccCceee--eeecCCCCCCceEEecceEe---eccC-cccCCCCCCccEEEEECCCCceeeeec-------
Q 012996           12 DTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFL---ASSQ-LREQPSASSGSILYWSWSKPQVEVKSL-------   78 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~~-------   78 (451)
                      -|.+.+|++...+...  +++..  ....+..+.  |.   .+|. .++-+... |.|.++............       
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~--dts~~~dm~--w~~~~~~g~~~l~~a~a~-G~i~~~r~~~~~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCT--DTSTEFDML--WRIRETDGDFNLLDAHAR-GQIQLYRNDEDESSVHLRGLSSKKI  119 (339)
T ss_pred             ccceEEEeecccccCccceeeee--cccccceee--eeeccCCccceeeecccc-ceEEEEeeccceeeeeecccchhhh
Confidence            4678888887655543  11110  111222222  32   2333 34444455 889998765433221111       


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee--eeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      ......++.|++.+.-++++-.+|.+.+-+.....+..  .++.|.-+++...|+. +.+.+++|+.|+.+..||++-  
T Consensus       120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~--  197 (339)
T KOG0280|consen  120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI--  197 (339)
T ss_pred             hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC--
Confidence            11135688899999999999999999976665554444  7899999999999986 567899999999999999963  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeeecccceeEEEECCCC-CEE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSVIDAIALDPAE-HVF  233 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l  233 (451)
                             +..-.-+....|...|.+|.-+|... .++++|+.|-.|++||.+ -++++..-...+.|..+.++|.- ..+
T Consensus       198 -------p~~~i~~n~kvH~~GV~SI~ss~~~~-~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~l  269 (339)
T KOG0280|consen  198 -------PKTFIWHNSKVHTSGVVSIYSSPPKP-TYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRL  269 (339)
T ss_pred             -------CcceeeecceeeecceEEEecCCCCC-ceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHH
Confidence                   12222233567899999998876532 899999999999999999 47788777788999999999942 233


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-CCCcEE-EEeCCCC
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVR-VWDPITH  300 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~dg~i~-iwd~~~~  300 (451)
                      +.++.-.-.++.+.......    ..........|.+-.+.-.|.. ..+|+|++ .|..++ +|-..++
T Consensus       270 L~~CMh~G~ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  270 LAACMHNGAKILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             HHHHHhcCceEEEecccccc----hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            33333344566666554321    0123445667888788888866 67888875 466644 6655444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=1.6e-12  Score=121.74  Aligned_cols=231  Identities=18%  Similarity=0.162  Sum_probs=150.6

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      ..|.++|...........+...+...+|+|||++|+.+...   ..|++||+.+++... +..+.+.+.++.|+||++.|
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            56888888765555445566678999999999999887643   469999998876543 33455667789999999877


Q ss_pred             EE-eeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCce
Q 012996          138 IS-GSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRL  211 (451)
Q Consensus       138 ~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~  211 (451)
                      +. .+.++  .|.+||+.+.            ....+..+........|++++  ..|+..+. ++  .|+++|+.+++.
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGK------------QLTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             EEEECCCCCccEEEEECCCC------------CEEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence            64 44444  5888888542            122233344444566888887  56655443 33  588888877765


Q ss_pred             eeeeecccceeEEEECCCCCEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996          212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      ..............|+|++++++.++.++   .|.+||+.+...       .   .+... .......|+| +++|+..+
T Consensus       315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-------~---~l~~~-~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-------R---VLTDT-GLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence            43333555677889999999999888776   788888876431       1   11111 2234567999 88887776


Q ss_pred             CCC---cEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996          288 EDG---MVRVWDPITHNIVRMFRLAKGPVNNILV  318 (451)
Q Consensus       288 ~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (451)
                      .++   .+.+.+. ++.....+..+.+.+..+.|
T Consensus       384 ~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       384 TRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             eCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            654   3555553 45555666555555555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.57  E-value=2.7e-12  Score=121.78  Aligned_cols=187  Identities=20%  Similarity=0.221  Sum_probs=147.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~   81 (451)
                      ..++... .+..+.+||...+.....+.... ...-..++-..++++.-++++++.. +.|.+|+........ ...|.+
T Consensus       100 k~i~l~~-~~ns~~i~d~~~~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~-~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen  100 KKIALVT-SRNSLLIRDSKNSSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVF-GEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             ceEEEEE-cCceEEEEecccCceehhcCCCc-eEEEEeEEEEeccCcEEEEEecccc-ccEEEEeccccCCcceecccCC
Confidence            4566666 77899999988777765554321 1111112222267778888888888 999999987555544 677999


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      .|.++.++-||+++++.+.|.++++|++.+.+... ..-+|...|+.++|+|+  .++|++.|.+.++|+..        
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--------  246 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--------  246 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc--------
Confidence            99999999999999999999999999999998776 66789999999999988  89999999999999762        


Q ss_pred             hcccccceecccCCcC-ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996          161 QRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~  208 (451)
                          ...+..+.+|.+ .|..++..++.  ...+|++.|+.+++||+..
T Consensus       247 ----~~~l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  247 ----GTQLEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ----cceehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence                223346777754 67888887776  7999999999999999753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=2.5e-13  Score=113.02  Aligned_cols=258  Identities=18%  Similarity=0.270  Sum_probs=176.3

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-----ceeeecccc------------CCeeEEEEccCC--cEEEE
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS  139 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s  139 (451)
                      ..+-|.++.|...|.+||+|..+|.|.++.-....     ....++.|.            ..|..+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            45678999999999999999999999999753322     223344443            468889998854  56778


Q ss_pred             eeCCCcEEEeeCcchhhhhhh---------hc---------------ccccceec-ccCCcCceeEEEEeecCCeeEEEE
Q 012996          140 GSEDGCVRIWSLLTVFEECES---------QR---------------ASHLYLHS-FTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~---------~~---------------~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      .+.|.+|++|.+.........         ..               ....+.+. -..|+--|.++.++.+.  ..+++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--Et~lS  181 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--ETFLS  181 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--ceEee
Confidence            889999999998653221100         00               00001111 14578888999888876  55555


Q ss_pred             eeCCCcEEEEEcCCCceeeeee---------cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCC-------CCC
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPST-------SSY  257 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~  257 (451)
                      + .|=.|.+|++.--.....+.         ....|++..|+| ..+.|+-.+..|.|++.|++....-.       .+.
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            4 57789999986433222221         234688999999 56778888999999999998532110       011


Q ss_pred             CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC-CCCceEEEeecCCC------------C---eeEEEEEe
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP-ITHNIVRMFRLAKG------------P---VNNILVVR  320 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~------------~---v~~l~~s~  320 (451)
                      .+....-+.+--..|..+.|++ |+|+++-+. -+|++||+ ...+++.+++.|..            .   =..++|+-
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence            1111122333346788999999 999997643 57999999 45678888776642            2   24578999


Q ss_pred             cCceeeeccCCCCccccccC
Q 012996          321 RPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       321 ~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ++.+++|||..+..++++..
T Consensus       340 ~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             CcceEecccccceEEEecCC
Confidence            99999999999999999954

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.56  E-value=4.5e-11  Score=105.16  Aligned_cols=267  Identities=10%  Similarity=0.016  Sum_probs=171.7

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeecCCC-
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLPAE-   81 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~~~~-   81 (451)
                      .++|.+.|..+++.+.++.....+. .+      ++|+++.+.++..         ++..|.+||..+.+......... 
T Consensus        26 ~~~v~ViD~~~~~v~g~i~~G~~P~-~~------~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMTDGGFLPN-PV------VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             CceEEEEECCCCEEEEEEEccCCCc-ee------ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence            3899999999999999887665433 22      7799999988887         77999999999988775544322 


Q ss_pred             -------CeeEEEECCCCcEEEEec-c-CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           82 -------PIKPIAANSHGTYIAGGG-Q-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        82 -------~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                             ....++++|||++|++.. . +..|.+.|+.+++.+..+.... ...-...+++.. + +-+.||......+.
T Consensus        99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d  175 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYG  175 (352)
T ss_pred             chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEec
Confidence                   334889999999998776 3 6889999999999988876422 222222222222 2 22345555444432


Q ss_pred             chhhhhhhhcccccceecccCCcCceeE-EEEee-cCCeeEEEEeeCCCcEEEEEcCCC-----ceeeeee--------c
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITD-IVIGY-GGVSATIVSASEDRTCKVWSLLKG-----RLLRNIV--------F  217 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~--------~  217 (451)
                      +.....   ....   ..+..-..++.. -.+.+ ++  .+++.... |.|.+.|+...     .....+.        .
T Consensus       176 ~~g~~~---~~~~---~vf~~~~~~v~~rP~~~~~dg--~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       176 TKGNPK---IKPT---EVFHPEDEYLINHPAYSNKSG--RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             CCCceE---Eeee---eeecCCccccccCCceEcCCC--cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence            211000   0000   001100000000 03344 44  56666555 99999996443     2222221        2


Q ss_pred             ccceeEEEECCCCCEEEEEe----------CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEE
Q 012996          218 PSVIDAIALDPAEHVFYAGS----------RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLIS  285 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s  285 (451)
                      +....-++++|+++.+++..          ..+.|.++|..+.         +.+..+.- ...+..++++| ++ +|++
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyv  316 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYA  316 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEE
Confidence            33445599999999999853          1247999999886         34444432 45889999999 77 7776


Q ss_pred             Ec-CCCcEEEEeCCCCceEEEee
Q 012996          286 GS-EDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       286 ~~-~dg~i~iwd~~~~~~~~~~~  307 (451)
                      .. .++.|.++|..+++.++++.
T Consensus       317 tn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       317 LSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             eCCCCCcEEEEECcCCeEEeeec
Confidence            65 67889999999999999983

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.55  E-value=2.3e-13  Score=128.78  Aligned_cols=194  Identities=19%  Similarity=0.247  Sum_probs=154.0

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC----CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  156 (451)
                      +.|....+.-+...++.++.+..+.+||...+...........    ...-+-++++.-++++|+.-+.|.+|+...   
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~---  164 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE---  164 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---
Confidence            3444455566677888888889999999987766655543221    122334566777899999999999999842   


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--eeecccceeEEEECCCCCEEE
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~  234 (451)
                             ...+ ..+.+|.+.|.++.++.++  .++++.|.|.++++|++.+.+...  -+.|...+..+++.|+  .++
T Consensus       165 -------dn~p-~~l~GHeG~iF~i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~  232 (967)
T KOG0974|consen  165 -------DNKP-IRLKGHEGSIFSIVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII  232 (967)
T ss_pred             -------cCCc-ceecccCCceEEEEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence                   1111 2678999999999999998  899999999999999999988765  4559999999999999  999


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC-cceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +++.|.+.++|+....          .+..+.+|. ..|..++..+ ...++|++.||.+++||+..
T Consensus       233 t~gedctcrvW~~~~~----------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  233 TVGEDCTCRVWGVNGT----------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EeccceEEEEEecccc----------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999999976653          244666675 4789999988 88999999999999999764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.54  E-value=1.8e-12  Score=105.70  Aligned_cols=258  Identities=10%  Similarity=0.084  Sum_probs=177.9

Q ss_pred             ccEEEEECCCCceee----eecCCCCeeEEEECC---CCc-EEEEeccCCCEEEEEcCCCcceeeecccc------CCee
Q 012996           61 GSILYWSWSKPQVEV----KSLPAEPIKPIAANS---HGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHY------RAVT  126 (451)
Q Consensus        61 g~i~vw~~~~~~~~~----~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~  126 (451)
                      |.+.+|++...+...    .......+..+.|.-   +|. .++.+-..|.|.+|..........+.+-.      ....
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            889999987554322    222345677777753   455 45666778999999875544444443221      1345


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (451)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~  206 (451)
                      ++.|++.+..++++..+|.+.+-+...         .....++.++.|...++...|+.... +++++|+.|+.+..||+
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~---------~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETE---------MVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDI  195 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecce---------eeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEe
Confidence            788999888999999999998555422         23334557889999999999987654 89999999999999999


Q ss_pred             C-CCceeee--eecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---
Q 012996          207 L-KGRLLRN--IVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---  279 (451)
Q Consensus       207 ~-~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---  279 (451)
                      + .++.+..  ..|...|.++.-+| .+.++++|+.|-.|++||.++..        +++..- .-.+.|+.+.++|   
T Consensus       196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--------kPl~~~-~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--------KPLFKA-KVGGGVWRIKHHPEIF  266 (339)
T ss_pred             cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--------CccccC-ccccceEEEEecchhh
Confidence            9 3333333  23788899988887 68899999999999999999653        222221 1238899999999   


Q ss_pred             CCEEEEEcCCCcEEEEeCCCC--c---eEEEeecCCCCeeEEEEEecCceeeecc-CCCCcc-ccc
Q 012996          280 GDLLISGSEDGMVRVWDPITH--N---IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHT-SSR  338 (451)
Q Consensus       280 ~~~l~s~~~dg~i~iwd~~~~--~---~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~-iw~  338 (451)
                      +.+|+++-.+| .+|-+...+  +   .+...+.|.+-+..-.|.....+|||++ .|+.++ +|-
T Consensus       267 ~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  267 HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence            44566655555 566665543  3   3445567777677777766666788876 455533 554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4e-12  Score=119.08  Aligned_cols=232  Identities=19%  Similarity=0.148  Sum_probs=148.7

Q ss_pred             cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996           62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI  138 (451)
Q Consensus        62 ~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (451)
                      .|.++|.+.........+...+....|+|||+.|+..+.+   ..|++||+.+++... +....+.+....|+|||+.|+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence            5888888766655555567788999999999998876543   359999998876543 222334455789999998877


Q ss_pred             -EeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCC--cEEEEEcCCCcee
Q 012996          139 -SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRLL  212 (451)
Q Consensus       139 -s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~  212 (451)
                       +.+.+|  .|.+||+.++            ....+..+........|+|++  ..++..+ .+|  .|+++|+.+++..
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~------------~~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASR------------QLSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             EEEccCCCceEEEEECCCC------------CeEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEE
Confidence             444455  5777888542            122233444455667899988  5554443 444  5777788777643


Q ss_pred             eeeecccceeEEEECCCCCEEEEEeCC-C--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC
Q 012996          213 RNIVFPSVIDAIALDPAEHVFYAGSRD-G--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE  288 (451)
Q Consensus       213 ~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~  288 (451)
                      .............|+|+++.++..+.+ +  .|.++|+.++..       ..+   .. ........|+| |+.++..+.
T Consensus       325 ~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-------~~l---t~-~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        325 RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-------RIL---TD-TSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------EEc---cC-CCCCCCceECCCCCEEEEEEe
Confidence            322222334457899999999877653 3  588888877531       111   11 11222458999 888777654


Q ss_pred             C---CcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          289 D---GMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       289 d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      +   ..|.++++. +.....+..+.+.+...+|+|
T Consensus       394 ~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        394 QQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            3   346777764 444455655566677777776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=5e-12  Score=117.97  Aligned_cols=233  Identities=15%  Similarity=0.114  Sum_probs=146.9

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      ..|.++|.+.............+.+..|+|||+.|+..+.+   ..|++||+.+++... +....+......|+|||+.|
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            36777887766555455567788999999999998876542   258999998876432 22222334578999999987


Q ss_pred             EE-eeCCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCC--cEEEEEcCCCce
Q 012996          138 IS-GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDR--TCKVWSLLKGRL  211 (451)
Q Consensus       138 ~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~--~i~iwd~~~~~~  211 (451)
                      +. .+.+|.  |.++|+.++            ....+..+........|+|++  +.++. ...++  .|+++|+.+++.
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg------------~~~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATK------------ALTRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCC------------CeEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence            64 555665  666777441            122334444556678899988  55544 43344  466678877764


Q ss_pred             eeeeecccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996          212 LRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      .............+|+|+|++++..+. ++  .|.++|+.++..       .   .+... .......|+| ++.|+..+
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-------~---~lt~~-~~d~~ps~spdG~~I~~~~  411 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-------Q---VLTST-RLDESPSVAPNGTMVIYST  411 (448)
T ss_pred             EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence            332222233345789999999887654 34  455667766531       1   11111 1122347999 87776655


Q ss_pred             C-CCc--EEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          288 E-DGM--VRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       288 ~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      . +|.  +.+++. ++.....+..+.+.+...+|+|
T Consensus       412 ~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        412 TYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            4 333  777786 5667777776667788888887

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.53  E-value=8e-13  Score=110.09  Aligned_cols=229  Identities=15%  Similarity=0.204  Sum_probs=162.4

Q ss_pred             eEEEeecCCCCCCeEEEE-CccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----e-ee
Q 012996            2 ELLIASSSVADTGIGCWD-LESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----V-EV   75 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~-~~   75 (451)
                      |.-+++.+ .|.+++||- ...|+.-..+..  .-+..++++.  |.+....|.++-.. |++.-+.+....    . ..
T Consensus        36 e~gv~~~s-~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~--y~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~  109 (404)
T KOG1409|consen   36 EEGVISVS-EDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAME--YVSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKD  109 (404)
T ss_pred             CCCeEEcc-ccceeeeEEeccccccCchhhh--hCCCCceEee--eeccceEEEEEEec-ceEEEEEhhhhhhhcchhhh
Confidence            34577888 999999995 334554444432  3456677777  88888888777666 999888765322    1 12


Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      ...|...|..+-|+-...++++.+.|..+.---.+++..+..+. .....+++.+.-.  +...|...|.|.+-.+..  
T Consensus       110 ~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~--  184 (404)
T KOG1409|consen  110 YLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDHSGQITMLKLEQ--  184 (404)
T ss_pred             hhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEecccccceEEEEEee--
Confidence            23478899999999888999999988766543344444433221 0111122222211  556666677777766643  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeeecccceeEEEECCCCCEE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l  233 (451)
                             ....++.++.+|.+.++++.|.+..  ..+++|..|..+.+||+.-++-.  ....|...|..++.-+.-+.+
T Consensus       185 -------~~~~~i~~~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l  255 (404)
T KOG1409|consen  185 -------NGCQLITTFNGHTGEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQL  255 (404)
T ss_pred             -------cCCceEEEEcCcccceEEEEEcCCC--cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheee
Confidence                   4566788899999999999999887  89999999999999999754433  333478889999988888999


Q ss_pred             EEEeCCCcEEEEEccCC
Q 012996          234 YAGSRDGSIYIAALNAE  250 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~  250 (451)
                      .+++.||.|.+|+++..
T Consensus       256 ~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  256 ISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eeccCCCeEEEEeccce
Confidence            99999999999998654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.5e-13  Score=136.61  Aligned_cols=228  Identities=18%  Similarity=0.257  Sum_probs=171.3

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      ++..+.++.  -+|...+.++|+.| |.|++|.+..++...  +......|+.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus      2207 ~v~~v~r~~--sHp~~~~Yltgs~d-gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMT--SHPSDPYYLTGSQD-GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             ccCceeeec--CCCCCceEEecCCC-ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            566777777  88889999999998 999999998776553  33345889999999999999999999999999975 6


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                      +.....+.|.....++.|-.  ..+++++.   ++.+.+||..-.        ....+++  ..|.+.++++++.|..  
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~--------~~~s~v~--~~H~~gaT~l~~~P~~-- 2348 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP--------PMNSLVH--TCHDGGATVLAYAPKH-- 2348 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC--------cccceee--eecCCCceEEEEcCcc--
Confidence            77778899999999999984  66777654   688999997431        2223344  7899999999999998  


Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      ..+++|+.+|.|++||++..+..+.++.        ++ ...+|++|+..|.|+||++...........-.....+..+.
T Consensus      2349 qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~ 2419 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNI 2419 (2439)
T ss_pred             eEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhc
Confidence            8999999999999999998887776653        44 67889999999999999998763221111000000011111


Q ss_pred             cceeEEEEecCCEEEEEcCCCc
Q 012996          270 KAVTCLAYSTGDLLISGSEDGM  291 (451)
Q Consensus       270 ~~v~~~~~~~~~~l~s~~~dg~  291 (451)
                      +  ..+...+.+.|.+|+.||+
T Consensus      2420 g--~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2420 G--MQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             C--ceeeeccCceEEEecCCCC
Confidence            1  2333334677888888874

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.5e-11  Score=109.21  Aligned_cols=274  Identities=10%  Similarity=0.177  Sum_probs=183.1

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCC
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG   92 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~   92 (451)
                      -.+.+|+++++.....++....  .+ .+..  |+.|..+.|--..  +.+++|+...........|...|+.+.+||.+
T Consensus       105 pn~~v~~vet~~~~s~~q~k~Q--~~-W~~q--fs~dEsl~arlv~--nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp  177 (566)
T KOG2315|consen  105 PNVLVYNVETGVQRSQIQKKMQ--NG-WVPQ--FSIDESLAARLVS--NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP  177 (566)
T ss_pred             Cceeeeeeccceehhheehhhh--cC-cccc--cccchhhhhhhhc--ceEEEEecCCccceeeeeeccceeeEEecCCC
Confidence            3477999999666655543221  21 4566  9999887666555  79999999987777777788999999999863


Q ss_pred             --cEEEE-----eccCCCEEEEEcCCCcce-----eeeccccCCeeEEEEccCCcEE-EEe--eCC---------CcEEE
Q 012996           93 --TYIAG-----GGQSGDIYMWEVASGRLL-----KKWHAHYRAVTCLVFSEDGSFL-ISG--SED---------GCVRI  148 (451)
Q Consensus        93 --~~l~~-----~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l-~s~--~~d---------g~i~v  148 (451)
                        ..+|+     ++.-+.|+||...-...-     ++|-  ...=..+.|.+-|.-| +.+  .-|         .++++
T Consensus       178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl  255 (566)
T KOG2315|consen  178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL  255 (566)
T ss_pred             CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence              34443     355567999987522211     1111  1122356787755432 222  223         24666


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP  228 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~  228 (451)
                      .++..           ...... -...++|.++.|++++..--++.|-.-..+.|||++ +.++..+ ..++=+++-|+|
T Consensus       256 l~t~g-----------~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp  321 (566)
T KOG2315|consen  256 LATQG-----------ESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNP  321 (566)
T ss_pred             EEecC-----------ceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-CCCCccceEECC
Confidence            66631           111111 224789999999999964455667788899999985 5555554 356678899999


Q ss_pred             CCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC------CCcEEEEeCC
Q 012996          229 AEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------DGMVRVWDPI  298 (451)
Q Consensus       229 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~------dg~i~iwd~~  298 (451)
                      .|++++.++.+   |.+-+||..+.         +.+..+..  ..-+-+.|+| |.+|+|+..      |+.++||++ 
T Consensus       322 ~g~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-  389 (566)
T KOG2315|consen  322 HGNIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-  389 (566)
T ss_pred             CCCEEEEeecCCCCCceEEEeccch---------hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-
Confidence            99999988764   68999999885         34444443  3446678999 999999874      788999996 


Q ss_pred             CCceEEEeecCCCCeeEEEEEecC
Q 012996          299 THNIVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       299 ~~~~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      +|.++..-.-.. ....+.|-|-.
T Consensus       390 tG~~l~~~~f~s-EL~qv~W~P~~  412 (566)
T KOG2315|consen  390 TGSLLHEKMFKS-ELLQVEWRPFN  412 (566)
T ss_pred             cCceeehhhhhH-hHhheeeeecC
Confidence            566665433222 57888888743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2e-11  Score=113.02  Aligned_cols=241  Identities=13%  Similarity=0.041  Sum_probs=144.0

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCccc---CCCCC-CccEEEEECCCCceeeeecCCCCeeEEEE
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLRE---QPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAA   88 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v~~~~~   88 (451)
                      ..|.+.|...+.. +.+....   .....-.  |+|||+.++   +...+ ...|.+.++.+++........+.....+|
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~--wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~w  238 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEH---SLSITPT--WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTF  238 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCC---CCcccce--EccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEE
Confidence            4677788764443 3333221   2223334  999998633   22222 14677778887765554444556667899


Q ss_pred             CCCCcEEEEecc-CC--C--EEEEEcCCC---cceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhh
Q 012996           89 NSHGTYIAGGGQ-SG--D--IYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        89 ~~~~~~l~~~~~-dg--~--i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~  159 (451)
                      +|||+.|+..+. +|  .  +.+|++..+   ........+.+......|+|||+.|+..+ .+|...+|.+.-.     
T Consensus       239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~-----  313 (428)
T PRK01029        239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID-----  313 (428)
T ss_pred             CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc-----
Confidence            999998876542 22  2  344676653   33333333334456789999999877655 4666566644210     


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC---CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (451)
                         ........+..+...+....|+|++  +.|+..+.+   ..|.+||+.+++..........+....|+|+|+.|+..
T Consensus       314 ---~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        314 ---PEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             ---ccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE
Confidence               0011122333444566778899998  666655432   36999999888765433344467789999999988754


Q ss_pred             eC---CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          237 SR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       237 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      ..   ...|+++|+..+.          ...+....+.+...+|+|
T Consensus       389 ~~~~g~~~L~~vdl~~g~----------~~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        389 AGNSNESELYLISLITKK----------TRKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             ECCCCCceEEEEECCCCC----------EEEeecCCCcccCceecC
Confidence            43   3468888887653          122223344566777877

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.50  E-value=3e-12  Score=114.29  Aligned_cols=191  Identities=19%  Similarity=0.263  Sum_probs=148.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEec----ceEe--------------eccCcccCCCCCCccEE
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG----QRFL--------------ASSQLREQPSASSGSIL   64 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~----~~~~--------------~~~~~l~~~~~d~g~i~   64 (451)
                      .++|... .||.+++||+..++....|.....-...-++..    ..++              .+...++-|... |.|.
T Consensus         6 ~~~A~~~-~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~-g~v~   83 (541)
T KOG4547|consen    6 DYFALST-GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ-GSVL   83 (541)
T ss_pred             heEeecC-CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC-ccEE
Confidence            4788888 999999999999998877754433222222222    1111              233344445455 9999


Q ss_pred             EEECCCCceeeeec---CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee
Q 012996           65 YWSWSKPQVEVKSL---PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS  141 (451)
Q Consensus        65 vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  141 (451)
                      +|+...+++..+..   |.+.|.++.++.+-..|.+++.|+.+..|+......++.+++....+.+++.+||+..+++++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as  163 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS  163 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence            99999999876643   789999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec--CC-eeEE-EEeeCCCcEEEEEcCC
Q 012996          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG--GV-SATI-VSASEDRTCKVWSLLK  208 (451)
Q Consensus       142 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~-~~~l-~s~~~d~~i~iwd~~~  208 (451)
                        +.|++||+++           ...+..|.+|.++|.++.|...  +. +.++ .+...+..+.+|-+..
T Consensus       164 --~~ik~~~~~~-----------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 --RQIKVLDIET-----------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --ceEEEEEccC-----------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence              5899999944           6678999999999999999876  11 1444 4455566677887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.49  E-value=7.6e-12  Score=117.14  Aligned_cols=205  Identities=16%  Similarity=0.089  Sum_probs=138.2

Q ss_pred             CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC---CcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT  179 (451)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  179 (451)
                      .|.++|.. +.....+..+...+....|+|||++|+.++.+   ..|.+||+.++         ..   ..+..+...+.
T Consensus       171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g---------~~---~~~~~~~~~~~  237 (417)
T TIGR02800       171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG---------QR---EKVASFPGMNG  237 (417)
T ss_pred             eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC---------CE---EEeecCCCCcc
Confidence            58888875 44445555567778899999999999877654   47999998652         11   12223445566


Q ss_pred             EEEEeecCCeeEEEEeeCCC--cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCCC
Q 012996          180 DIVIGYGGVSATIVSASEDR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPST  254 (451)
Q Consensus       180 ~i~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~  254 (451)
                      +++|+|++. .++++.+.++  .|++||+.++.......+........|+|+++.|+..+. ++  .|+++|+.+..   
T Consensus       238 ~~~~spDg~-~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---  313 (417)
T TIGR02800       238 APAFSPDGS-KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---  313 (417)
T ss_pred             ceEECCCCC-EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence            788999883 3444555444  588899987765444334444557789999998876654 33  57777876543   


Q ss_pred             CCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC---cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996          255 SSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG---MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       255 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                             ...+..+...+....|+| +++++.++.++   .|.+||+.++... .+... .......|+|+|++|+.++.
T Consensus       314 -------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       314 -------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             -------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEe
Confidence                   223333455677889999 88888887776   7899998876543 33322 23456689999999988776


Q ss_pred             CCC
Q 012996          331 SNP  333 (451)
Q Consensus       331 d~~  333 (451)
                      ++.
T Consensus       385 ~~~  387 (417)
T TIGR02800       385 RGG  387 (417)
T ss_pred             CCC
Confidence            653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=9.2e-11  Score=106.01  Aligned_cols=273  Identities=15%  Similarity=0.139  Sum_probs=172.1

Q ss_pred             ccEEEEEC--CCCceeeee--cCCCCeeEEEECCCCcEEEEecc----CCCEEEEEcCCC--c--ceeeeccccCCeeEE
Q 012996           61 GSILYWSW--SKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASG--R--LLKKWHAHYRAVTCL  128 (451)
Q Consensus        61 g~i~vw~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~~  128 (451)
                      +.|.+|++  +++.+....  ........++++|++++|.+...    +|.|..|++...  +  .+............+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            78888888  444443222  24567889999999999988766    568999988764  2  233333344556789


Q ss_pred             EEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhh-ccc--ccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEE
Q 012996          129 VFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQ-RAS--HLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKV  203 (451)
Q Consensus       129 ~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~i  203 (451)
                      +++|++++|+++.. +|.|.++++.......... ...  ..-............++.++|++  +++++.. ....|.+
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYV  170 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEE
Confidence            99999999998874 8899999996521100000 000  00000001123445678899988  6666544 4457999


Q ss_pred             EEcCCCc--eee--e--eecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeecc------CCc
Q 012996          204 WSLLKGR--LLR--N--IVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD------HSK  270 (451)
Q Consensus       204 wd~~~~~--~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~  270 (451)
                      |++....  ...  .  +........++|+|+++++++... ++.|.+|++......     ...+.....      ...
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS-----LTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESCETTSCSSS
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-----eeEEEEeeeccccccccC
Confidence            9997654  322  2  235567899999999999887754 668999998832210     122222211      122


Q ss_pred             ceeEEEEec-CCEEEEEc-CCCcEEEEeCC--CCc--eEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccC
Q 012996          271 AVTCLAYST-GDLLISGS-EDGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH  340 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~  340 (451)
                      ....|.++| +++|+++. ..+.|.+|++.  ++.  .+..+......-+.++++|+|++|+++. .++.|.+|+++
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            678899999 88877765 46789999983  233  3444444344579999999999998776 55789998875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.5e-11  Score=115.17  Aligned_cols=234  Identities=15%  Similarity=0.124  Sum_probs=145.5

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~   91 (451)
                      .|.++|...+. ...+..+   ...+....  |+|+|+.|+..+.++  ..|.+|++.++.........+.+...+|+||
T Consensus       180 ~l~~~d~~g~~-~~~l~~~---~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQS---REPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCCC-ceEEecC---CCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC
Confidence            47888876444 3334332   24456666  999999998766442  4688999988776544434455667999999


Q ss_pred             CcEEEE-eccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CC--cEEEeeCcchhhhhhhhcccc
Q 012996           92 GTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        92 ~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |+.|+. ...+|  .|++||+.+++.. .+..+........|+|||+.|+..+. +|  .|.++++.++.         .
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---------~  323 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---------A  323 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---------E
Confidence            998874 44444  5888899877644 34445556677899999998776554 33  46666764321         1


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC-C-
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G-  240 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g-  240 (451)
                      ..+ .+.+  .......|+|++  +.++..+. ++  .|.+||+.+++.. .+..........|+|+|+.++..+.+ | 
T Consensus       324 ~~l-t~~~--~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~~g~  397 (430)
T PRK00178        324 ERV-TFVG--NYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQQGR  397 (430)
T ss_pred             EEe-ecCC--CCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEecCCc
Confidence            111 1111  223346788888  56665543 33  5888999887643 23322233356899999998876644 3 


Q ss_pred             -cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                       .++++++....          ...+..+.+.+...+|+|
T Consensus       398 ~~l~~~~~~g~~----------~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        398 GVLMLVSINGRV----------RLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             eEEEEEECCCCc----------eEECcCCCCCcCCCccCC
Confidence             46677775432          223333445666677776

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.48  E-value=2.7e-12  Score=107.01  Aligned_cols=248  Identities=17%  Similarity=0.260  Sum_probs=191.5

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeee-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      ++.+.|+....-|-..-+++.+.|.+++||--+ +++.-..+ .....+++++.+.++...|++|-.+|++.-+.+....
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf  101 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF  101 (404)
T ss_pred             CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence            355677777777777779999999999999643 33332222 2234678999999999999999999999999885432


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (451)
                             .+....+....|...+..+.|+...  .++++.+.|..+.---.+.+..+..+.......++.+.-.  +.++
T Consensus       102 -------nkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen  102 -------NKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV  170 (404)
T ss_pred             -------hhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence                   3344566778899999999998877  8999999998877666666666555543333333333222  6777


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCe
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPV  313 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v  313 (451)
                      |...|.|..-.+....       ..++.++.+|...+++++|.+ ...|.+|..|..+.+||+.-++ ...++.+|.+.|
T Consensus       171 Gd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV  243 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV  243 (404)
T ss_pred             cccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence            8888888777765543       367889999999999999999 9999999999999999987554 345678899999


Q ss_pred             eEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          314 NNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       314 ~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      ..+..-+.-+.|.+++.||.|.+|+.+-..
T Consensus       244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  244 QALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            999999999999999999999999987543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.48  E-value=8.3e-13  Score=131.44  Aligned_cols=222  Identities=17%  Similarity=0.302  Sum_probs=170.5

Q ss_pred             cCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEE
Q 012996           50 SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCL  128 (451)
Q Consensus        50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~  128 (451)
                      ++....+..+ +...-|..+...... ..+-..|.++.-+|...+.++|+.||.|++|....+..+..++ .....|+.+
T Consensus      2180 s~~~~~~n~~-~~~~tq~~~~~~~~~-k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2180 SNRFTPSNLP-WLGSTQTSRGASVMI-KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred             cccCCcccCC-ccccceecccceeEe-ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence            3444444444 555556654444333 3355789999999999999999999999999998888887774 233789999


Q ss_pred             EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEE
Q 012996          129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWS  205 (451)
Q Consensus       129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd  205 (451)
                      .|+.+|+.+..+..||.+.+|...            ..+......|.....++.|-.    ..+++++   .++.+.+||
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~------------pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS------------PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC------------CcceeccccCCccccceeeee----hhhhccccCCCCCcccchh
Confidence            999999999999999999999983            445667788998888888866    3456544   578899999


Q ss_pred             cCCC--ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996          206 LLKG--RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (451)
Q Consensus       206 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l  283 (451)
                      ..-.  .......|.+.++++++-|....|++|+.+|.|++||++...         ....++.         +....+|
T Consensus      2322 tl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq---------l~h~~~~---------~~~~~~f 2383 (2439)
T KOG1064|consen 2322 TLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ---------LRHTFQA---------LDTREYF 2383 (2439)
T ss_pred             cccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH---------HHHHhhh---------hhhhhee
Confidence            6432  222224489999999999999999999999999999998863         2222222         2237899


Q ss_pred             EEEcCCCcEEEEeCCCCceEEEee
Q 012996          284 ISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       284 ~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      ++|+..|.++||++.....++++.
T Consensus      2384 ~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eccCcccceEEEEccccchhhcCc
Confidence            999999999999999888887765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=6.5e-12  Score=112.21  Aligned_cols=192  Identities=16%  Similarity=0.161  Sum_probs=149.2

Q ss_pred             cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee------------------cCCeeEEE
Q 012996          132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY------------------GGVSATIV  193 (451)
Q Consensus       132 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~------------------~~~~~~l~  193 (451)
                      |...+++....||.+++|+.......     ....+...   -++..++..|.-                  .++...++
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~-----~e~~p~~~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv   74 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQ-----QEFAPIAS---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV   74 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceee-----eeeccchh---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence            45678999999999999999653211     01111111   122333333310                  11226788


Q ss_pred             EeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      -|...|.|.+|+...++....+.   |.+.|.++.++.+-..|++++.|+.+..|+....         ..+........
T Consensus        75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~  145 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---------VIIRIWKEQKP  145 (541)
T ss_pred             eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---------eeeeeeccCCC
Confidence            89999999999999999888876   8899999999999999999999999999999886         55677777888


Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec-----Cceee-eccCCCCccccccCCC
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-----PLYLN-LGSFSNPHTSSRRHGS  342 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~~l~-~~s~d~~i~iw~~~~~  342 (451)
                      .+.+++.+| +..+++++  +.|++||+++++.+.+|.+|.++|+++.|.-+     |.++. +...+..+.+|.+...
T Consensus       146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            999999999 88998875  57999999999999999999999999999987     55554 4556667888987753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.4e-11  Score=113.40  Aligned_cols=234  Identities=16%  Similarity=0.118  Sum_probs=140.5

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~   91 (451)
                      .|.++|...... +.+...   ...+....  |+|+|+.++..+.++  ..|.+||+.+++..............+|+||
T Consensus       199 ~l~i~d~dG~~~-~~l~~~---~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRS---PEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCCc-eEeecC---CCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence            577778654333 333322   23445555  999999998775443  3588889887765433333344567899999


Q ss_pred             CcEEEE-eccCCC--EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCc--EEEeeCcchhhhhhhhcccc
Q 012996           92 GTYIAG-GGQSGD--IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        92 ~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |+.|+. .+.+|.  |+++|+.+++.. .+..+........|+||++.|+..+. ++.  |.++|+.++         ..
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~~  342 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------KV  342 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------CE
Confidence            998865 455564  888898777643 44445556678899999998876554 444  555566431         11


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC-C-
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G-  240 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g-  240 (451)
                      ..+ ++.+  .......|+|++  ++++..+. ++  .|.++|+.+++... +..........|+|+|+.|+..+.+ | 
T Consensus       343 ~~L-t~~g--~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~  416 (448)
T PRK04792        343 SRL-TFEG--EQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGK  416 (448)
T ss_pred             EEE-ecCC--CCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCc
Confidence            111 1222  223356889988  55555443 44  45567887776432 2212222345799999988766543 3 


Q ss_pred             -cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                       .+++++....          ....+..+.+.+...+|+|
T Consensus       417 ~~l~~~~~~G~----------~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        417 QVLAAVSIDGR----------FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             eEEEEEECCCC----------ceEECcCCCCCcCCCccCC
Confidence             3667776442          2333444555667777776

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=6.8e-11  Score=109.49  Aligned_cols=240  Identities=13%  Similarity=0.026  Sum_probs=145.0

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE---EEeccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCc
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI---AGGGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS  135 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  135 (451)
                      ..|.+.|.+.............+.+-+|+|||+.+   ++...+|  .|++.++.+++.... ....+......|+|||+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCC
Confidence            46777787766554444445566778999999752   2444343  488889887764333 22344455789999998


Q ss_pred             EEEEeeC-CC----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEE--EcC
Q 012996          136 FLISGSE-DG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVW--SLL  207 (451)
Q Consensus       136 ~l~s~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iw--d~~  207 (451)
                      .|+..+. +|    .+..|++..+.        ..........+........|+|++  +.|+..+ .+|...+|  ++.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~--------~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGA--------IGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCC--------CCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECc
Confidence            8886543 23    34446664310        011111122222334567899998  5555444 56655555  443


Q ss_pred             C-Cceeeeee-cccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996          208 K-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (451)
Q Consensus       208 ~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  281 (451)
                      . +.....+. ....+....|+|+|+.|+..+.+   ..|++||+.++..          ..+......+....|+| ++
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------YQLTTSPENKESPSWAIDSL  383 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------EEccCCCCCccceEECCCCC
Confidence            2 22233333 33466788999999988876543   3699999987641          22322334567789999 88


Q ss_pred             EEEEEcC---CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996          282 LLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       282 ~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      .|+..+.   ...|.+||+..++..... ...+.+...+|+|-.
T Consensus       384 ~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        384 HLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence            7765432   346888998877654443 345567778888753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=3e-11  Score=110.32  Aligned_cols=276  Identities=15%  Similarity=0.150  Sum_probs=185.8

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeee------------ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRY------------KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS   69 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~   69 (451)
                      +.++|.|+ .||.++|-.+.+...-...            +...+|...|..+.  |....+.|-++..+ |.|.||-+-
T Consensus        26 ~gyIAcgG-~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT--WNe~~QKLTtSDt~-GlIiVWmly  101 (1189)
T KOG2041|consen   26 SGYIACGG-ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT--WNENNQKLTTSDTS-GLIIVWMLY  101 (1189)
T ss_pred             CCeEEecc-ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEE--eccccccccccCCC-ceEEEEeee
Confidence            36899999 9999999987654332211            23346778888888  99888888777766 999999988


Q ss_pred             CCcee---eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-eeeccccCCeeEEEEccCCcEEEEeeCCCc
Q 012996           70 KPQVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGC  145 (451)
Q Consensus        70 ~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  145 (451)
                      ++...   ......+-|.+++|+.||..++..-.||.|.|=.+...+.- +.+++  .....+.|++|.+.++.+-.+|.
T Consensus       102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange  179 (1189)
T KOG2041|consen  102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGE  179 (1189)
T ss_pred             cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCc
Confidence            77643   33345678999999999999999999999988776433221 11221  22347899999999999999999


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec------CCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG------GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS  219 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  219 (451)
                      +.+||....+...-...-.......+......|..+.|...      ++...++.+...|.+.|-.-.+......+..+-
T Consensus       180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm  259 (1189)
T KOG2041|consen  180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM  259 (1189)
T ss_pred             EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence            99999855332211100000011112223334666666422      123688999999999887665555555556667


Q ss_pred             ceeEEEECCCCCEEEEEeCCC---------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996          220 VIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (451)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d  289 (451)
                      .+....|+++|..|++++.+.         .|.+|..-.          +.+.+++-....|++++|-. |-.++.+ .|
T Consensus       260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~A-vd  328 (1189)
T KOG2041|consen  260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIA-VD  328 (1189)
T ss_pred             EeecceecCCCcEEEEccCcccccCccccceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEE-ec
Confidence            889999999999999988653         455554332          44667777788899999976 4333332 34


Q ss_pred             CcEEE
Q 012996          290 GMVRV  294 (451)
Q Consensus       290 g~i~i  294 (451)
                      +.|.+
T Consensus       329 sfiyf  333 (1189)
T KOG2041|consen  329 SFIYF  333 (1189)
T ss_pred             ceEEE
Confidence            44444

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1e-10  Score=103.75  Aligned_cols=267  Identities=13%  Similarity=0.152  Sum_probs=171.9

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH   91 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~   91 (451)
                      ..++|||+.+|...+.|....++-..--..  +||.+++++|....  ..|.||+..+-.+. .+...-..|....|+|.
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~f--rWS~DdKy~Arm~~--~sisIyEtpsf~lld~Kslki~gIr~FswsP~  357 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIF--RWSHDDKYFARMTG--NSISIYETPSFMLLDKKSLKISGIRDFSWSPT  357 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceE--EeccCCceeEEecc--ceEEEEecCceeeecccccCCccccCcccCCC
Confidence            579999999999999887654332222223  49999999998888  58999997663332 22334678999999999


Q ss_pred             CcEEEEecc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe----------eCCCcEEEeeCcchhh
Q 012996           92 GTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG----------SEDGCVRIWSLLTVFE  156 (451)
Q Consensus        92 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~~~  156 (451)
                      +++||.-..     -..+.+-.+.+++.+++.+-|.-.=..+.|-.+|.+|+.-          +.-..+-|+.++.   
T Consensus       358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire---  434 (698)
T KOG2314|consen  358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE---  434 (698)
T ss_pred             cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec---
Confidence            998886533     2457788888888887766555444457777788887742          1222355565533   


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCC-C---ceeeeeecccceeEEEECCCCC
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLK-G---RLLRNIVFPSVIDAIALDPAEH  231 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~---~~~~~~~~~~~i~~~~~~~~~~  231 (451)
                             ...++... .-...|...+|-|.|+.-.+++|. ...++.+|.+.+ .   +.+..+. ....+.+.|+|.|+
T Consensus       435 -------KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~  505 (698)
T KOG2314|consen  435 -------KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGR  505 (698)
T ss_pred             -------cCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCc
Confidence                   22222222 235577788888888522222332 235788888873 2   2222222 35678899999999


Q ss_pred             EEEEE---eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          232 VFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       232 ~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      +++++   +..|.+.++|+.....       . ......| ...+.+.|.| |+|+++++.-+..   .+.+|-.+.+|+
T Consensus       506 fvvva~l~s~~g~l~F~D~~~a~~-------k-~~~~~eh-~~at~veWDPtGRYvvT~ss~wrh---k~d~GYri~tfq  573 (698)
T KOG2314|consen  506 FVVVAALVSRRGDLEFYDTDYADL-------K-DTASPEH-FAATEVEWDPTGRYVVTSSSSWRH---KVDNGYRIFTFQ  573 (698)
T ss_pred             EEEEEEecccccceEEEecchhhh-------h-hccCccc-cccccceECCCCCEEEEeeehhhh---ccccceEEEEee
Confidence            98876   4578999999985321       1 1111122 4567899999 9999999865432   233444444444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.45  E-value=2.3e-10  Score=100.72  Aligned_cols=263  Identities=11%  Similarity=0.038  Sum_probs=161.9

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc----------CCCEEEEEcCCCcceeeecccc-------C
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ----------SGDIYMWEVASGRLLKKWHAHY-------R  123 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~-------~  123 (451)
                      +.|.+.|..+.+..-...-......+ ++|||+.|.++..          +..|.+||..+++.+..+....       .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            78999999998876554433344445 9999998877654          6789999999999988875322       2


Q ss_pred             CeeEEEEccCCcEEEEee-C-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          124 AVTCLVFSEDGSFLISGS-E-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ....++++|||++|+... . +..|.+.|+.+           ...+..+.- .+...-... .+   ......+.||..
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-----------~kvv~ei~v-p~~~~vy~t-~e---~~~~~~~~Dg~~  169 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-----------KAFVRMMDV-PDCYHIFPT-AN---DTFFMHCRDGSL  169 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCC-----------CcEEEEEeC-CCCcEEEEe-cC---CccEEEeecCce
Confidence            334789999999998776 3 68999999955           333333322 111111111 11   111122334444


Q ss_pred             EEEEcCC-Cce-eeeee--cc--cce-eEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-------
Q 012996          202 KVWSLLK-GRL-LRNIV--FP--SVI-DAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------  266 (451)
Q Consensus       202 ~iwd~~~-~~~-~~~~~--~~--~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------  266 (451)
                      ....+.+ ++. .....  +.  .++ ..-.+.+ +++++++... |.|++.|+........    .....+.       
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~----~~~~~~~~~~~~~~  244 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL----PAIEAFTEAEKADG  244 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec----ceeeeccccccccc
Confidence            3332221 111 11100  01  000 0003455 8888888777 9999999765432111    1111111       


Q ss_pred             cCCcceeEEEEec-CCEEEEEc----------CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc-eeeecc-CCCC
Q 012996          267 DHSKAVTCLAYST-GDLLISGS----------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNLGS-FSNP  333 (451)
Q Consensus       267 ~~~~~v~~~~~~~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-~d~~  333 (451)
                      -....+.-+++++ ++.+++..          ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.
T Consensus       245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCc
Confidence            1233444599998 77766642          225799999999999999886 45899999999999 777655 6788


Q ss_pred             ccccccCCCCCCC
Q 012996          334 HTSSRRHGSQLPP  346 (451)
Q Consensus       334 i~iw~~~~~~~~~  346 (451)
                      +.+.|....+...
T Consensus       324 VsViD~~t~k~i~  336 (352)
T TIGR02658       324 LYIFDAETGKELS  336 (352)
T ss_pred             EEEEECcCCeEEe
Confidence            9999987664433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.44  E-value=7e-10  Score=111.04  Aligned_cols=281  Identities=12%  Similarity=0.087  Sum_probs=188.7

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEE----ECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYW----SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      ....|..+.  |.++...++.+..+ |.|.+.    +...........-...|.+++||||+..|+..+.++++.+-.- 
T Consensus        74 ~~~~ivs~~--yl~d~~~l~~~~~~-Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-  149 (928)
T PF04762_consen   74 PNDKIVSFQ--YLADSESLCIALAS-GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-  149 (928)
T ss_pred             CCCcEEEEE--eccCCCcEEEEECC-ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-
Confidence            345666777  99999888888887 999999    7677777766667889999999999999999998888877542 


Q ss_pred             CCc------------------------ceeeecc------------------------ccCCeeEEEEccCCcEEEEeeC
Q 012996          111 SGR------------------------LLKKWHA------------------------HYRAVTCLVFSEDGSFLISGSE  142 (451)
Q Consensus       111 ~~~------------------------~~~~~~~------------------------~~~~v~~~~~~~~~~~l~s~~~  142 (451)
                      +..                        ....|+|                        +...-..|+|-.||.+|++.+.
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence            111                        1111110                        2234457899999999998765


Q ss_pred             ---C---CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC---CCcEEEEEcCCCceee
Q 012996          143 ---D---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLLR  213 (451)
Q Consensus       143 ---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~  213 (451)
                         .   ..++||+-+            .....+...-.+--.+++|.|.|  ++|++...   ...|.+|. ++|-...
T Consensus       230 ~~~~~~~R~iRVy~Re------------G~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhg  294 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE------------GELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHG  294 (928)
T ss_pred             EcCCCceeEEEEECCC------------ceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEee
Confidence               2   468999863            11222222222223467888888  78888765   34567777 4555555


Q ss_pred             eeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec--CCEEEE
Q 012996          214 NIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST--GDLLIS  285 (451)
Q Consensus       214 ~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~l~s  285 (451)
                      .|..     ...|..+.|++++..|++...|. |.+|-..+-.       |-....+.- ....+..+.|+|  ...|..
T Consensus       295 eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v  366 (928)
T PF04762_consen  295 EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRLHV  366 (928)
T ss_pred             eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence            5542     45799999999999999987655 9999887642       222223322 223455589998  566777


Q ss_pred             EcCCCcEEEEeC----CCCc--------eEEEee-----------------------cCCCCeeEEEEEecCceeeeccC
Q 012996          286 GSEDGMVRVWDP----ITHN--------IVRMFR-----------------------LAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       286 ~~~dg~i~iwd~----~~~~--------~~~~~~-----------------------~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                      .+.+|.+..++.    ..+.        .+..+.                       ....+|.+++|++++..+++-..
T Consensus       367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~  446 (928)
T PF04762_consen  367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS  446 (928)
T ss_pred             EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC
Confidence            777676655442    2110        111111                       12468999999999988999999


Q ss_pred             CCCccccccCCC
Q 012996          331 SNPHTSSRRHGS  342 (451)
Q Consensus       331 d~~i~iw~~~~~  342 (451)
                      ||.+.+|.....
T Consensus       447 d~~l~~~~~~~~  458 (928)
T PF04762_consen  447 DGSLSIYEWDLK  458 (928)
T ss_pred             CCCEEEEEecCC
Confidence            999999885543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=6.2e-10  Score=94.27  Aligned_cols=269  Identities=13%  Similarity=0.116  Sum_probs=176.9

Q ss_pred             ccEEEEECCCCce----eeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCC--Ccc--eeeeccccCCeeEEE
Q 012996           61 GSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS--GRL--LKKWHAHYRAVTCLV  129 (451)
Q Consensus        61 g~i~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~  129 (451)
                      .-|.+|++++..-    .......+.++-|+|+|++++|.++..   +|.|.-|.+..  |++  +........+.+.++
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs   95 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS   95 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence            7899999884332    233345678999999999999988754   46787777764  443  222222334447899


Q ss_pred             EccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCc----------eeEEEEeecCCeeEEEEeeC-
Q 012996          130 FSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR----------ITDIVIGYGGVSATIVSASE-  197 (451)
Q Consensus       130 ~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~i~~~~~~~~~~l~s~~~-  197 (451)
                      +++++++++++.. -|.|.++-+....        ..........|.+.          +....+.|++  +++++.+. 
T Consensus        96 vd~~g~~vf~AnY~~g~v~v~p~~~dG--------~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG  165 (346)
T COG2706          96 VDEDGRFVFVANYHSGSVSVYPLQADG--------SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLG  165 (346)
T ss_pred             ECCCCCEEEEEEccCceEEEEEcccCC--------ccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecC
Confidence            9999999998876 4789999885521        11111112223333          6667788888  77777663 


Q ss_pred             CCcEEEEEcCCCceeeee----ecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeec---cCC
Q 012996          198 DRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLS---DHS  269 (451)
Q Consensus       198 d~~i~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~  269 (451)
                      --.|.+|++..+.....-    ........|.|+|++++.++.+. +++|.+|..+.....  ....+.+..+.   .-.
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~--~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK--FEELQTIDTLPEDFTGT  243 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce--EEEeeeeccCccccCCC
Confidence            346999999877654322    35667899999999999988764 789999998875211  00111111111   123


Q ss_pred             cceeEEEEec-CCEEEEEcC-CCcEEEEeCCCC-ceEEE---eecCCCCeeEEEEEecCceeeeccCCC-CccccccCC
Q 012996          270 KAVTCLAYST-GDLLISGSE-DGMVRVWDPITH-NIVRM---FRLAKGPVNNILVVRRPLYLNLGSFSN-PHTSSRRHG  341 (451)
Q Consensus       270 ~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~~-~~~~~---~~~~~~~v~~l~~s~~~~~l~~~s~d~-~i~iw~~~~  341 (451)
                      .....|..++ |++|.++.. ...|.+|.+... ..+..   ...+...-....|+|.|++|+++..++ .+.++.++.
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            4667788999 999988754 336888876532 22332   223333468899999999999988764 577777653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=1.1e-11  Score=103.31  Aligned_cols=243  Identities=14%  Similarity=0.157  Sum_probs=154.4

Q ss_pred             EEEeecCCCCCCeEEEECccCc-----eeeeeecCCCCCCceEEec-------ceEeeccCc--ccCCCCCCccEEEEEC
Q 012996            3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVG-------QRFLASSQL--REQPSASSGSILYWSW   68 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~--l~~~~~d~g~i~vw~~   68 (451)
                      .+||||. .+|.|.++.-....     ....++.|...-..+.++.       .+|.++++.  ++..+.| .+|++|.+
T Consensus        38 e~LatGd-kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd-ktiKlWKi  115 (433)
T KOG1354|consen   38 ERLATGD-KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND-KTIKLWKI  115 (433)
T ss_pred             ceEeecC-CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC-cceeeeee
Confidence            5799999 99999999754322     2333444433222222211       127665543  4444555 99999987


Q ss_pred             CCCcee-------------------------------------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           69 SKPQVE-------------------------------------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        69 ~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      ......                                     ....|.-.|.+|.++.|+..++++ .|=.|.+|++.-
T Consensus       116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei  194 (433)
T KOG1354|consen  116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEI  194 (433)
T ss_pred             eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccc
Confidence            532110                                     011245578899999999988884 567899999864


Q ss_pred             Ccc---eeeeccc-----cCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh-----hhcccccceecccCCcCc
Q 012996          112 GRL---LKKWHAH-----YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE-----SQRASHLYLHSFTGHTLR  177 (451)
Q Consensus       112 ~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  177 (451)
                      ...   +.-++.+     ..-|++..|+| ..+.|+-.+..|+|++.|++.......     ..........-+.+--..
T Consensus       195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsS  274 (433)
T KOG1354|consen  195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISS  274 (433)
T ss_pred             cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhh
Confidence            322   1112222     35688899999 456777888899999999984211100     000111112223344567


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEc-CCCceeeeee-cc------------cc---eeEEEECCCCCEEEEEeCCC
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSL-LKGRLLRNIV-FP------------SV---IDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~-~~------------~~---i~~~~~~~~~~~l~~~~~dg  240 (451)
                      |.++.|+.+|  +++++-+. -+|++||+ ...+++.+++ |.            ..   -..++|+.++.++++|+...
T Consensus       275 ISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n  351 (433)
T KOG1354|consen  275 ISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN  351 (433)
T ss_pred             hhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence            8899999998  78887643 57999999 4556666655 21            12   24578999999999999999


Q ss_pred             cEEEEEccCCC
Q 012996          241 SIYIAALNAES  251 (451)
Q Consensus       241 ~i~i~d~~~~~  251 (451)
                      .+++|+...+.
T Consensus       352 ~frvf~~~~gs  362 (433)
T KOG1354|consen  352 VFRVFNLARGS  362 (433)
T ss_pred             eEEEecCCCCc
Confidence            99999976654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=2.2e-11  Score=112.12  Aligned_cols=309  Identities=13%  Similarity=0.055  Sum_probs=201.2

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeeeec-C
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKSL-P   79 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~   79 (451)
                      .++||++. ..|.|.+||...+..+..+..+..+...+..+.  +-++. ..|++.... .++.+|+..+++...+.. .
T Consensus        79 ~lliAsaD-~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~--~rd~Srd~LlaIh~s-s~lvLwntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen   79 QLLIASAD-ISGRIILVDFVLASVINWLSHSNDSVQDLCWVP--ARDDSRDVLLAIHGS-STLVLWNTDTGEKFWKYDYS  154 (1062)
T ss_pred             ceeEEecc-ccCcEEEEEehhhhhhhhhcCCCcchhheeeee--ccCcchheeEEecCC-cEEEEEEccCCceeeccccC
Confidence            36899999 999999999999999988887776666666554  44556 344444444 899999999999887754 3


Q ss_pred             CCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC-------CcceeeeccccC-------------------------Cee
Q 012996           80 AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-------GRLLKKWHAHYR-------------------------AVT  126 (451)
Q Consensus        80 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~-------------------------~v~  126 (451)
                      .....|+.+.| |.+.+..-+..|.+.+-+.-.       ++..+.-..|.+                         ...
T Consensus       155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a  234 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA  234 (1062)
T ss_pred             CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence            45666799988 666666666667777765421       111111111111                         012


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (451)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~  206 (451)
                      .++|+|.-+.++-......+.++|++           -..++....-..+.+.-+.+.|++....+++...||.+.+|--
T Consensus       235 ~faf~p~~rn~lfi~~prellv~dle-----------~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  235 QFAFSPHWRNILFITFPRELLVFDLE-----------YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             hhhcChhhhceEEEEeccceEEEcch-----------hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            34567765555555667789999983           3444555555556666678888888789999999999999975


Q ss_pred             CCCceeeee-----e--cccce-----------eEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCC----------CC
Q 012996          207 LKGRLLRNI-----V--FPSVI-----------DAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTS----------SY  257 (451)
Q Consensus       207 ~~~~~~~~~-----~--~~~~i-----------~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~  257 (451)
                      +......+.     .  ....+           ......|. ...+++--.+|...+|.+.++.....          ++
T Consensus       304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf  383 (1062)
T KOG1912|consen  304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF  383 (1062)
T ss_pred             eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc
Confidence            542111111     0  11222           22233343 44555556778888888875432110          00


Q ss_pred             C------------ceeeeeeccCCcceeEEEEec-C------------------CEEEEEcCCCcEEEEeCCCCceEEEe
Q 012996          258 G------------MHIIGSLSDHSKAVTCLAYST-G------------------DLLISGSEDGMVRVWDPITHNIVRMF  306 (451)
Q Consensus       258 ~------------~~~~~~~~~~~~~v~~~~~~~-~------------------~~l~s~~~dg~i~iwd~~~~~~~~~~  306 (451)
                      .            ...+....+|....++....| .                  .+++.|...|+|.++|+.++..-+.+
T Consensus       384 ~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f  463 (1062)
T KOG1912|consen  384 DFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF  463 (1062)
T ss_pred             cccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh
Confidence            0            011112234555555555443 1                  26888999999999999999999999


Q ss_pred             ecCCCCeeEEEEEecCcee
Q 012996          307 RLAKGPVNNILVVRRPLYL  325 (451)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l  325 (451)
                      ..|.+.|.++.|.-...++
T Consensus       464 svht~~VkgleW~g~sslv  482 (1062)
T KOG1912|consen  464 SVHTSLVKGLEWLGNSSLV  482 (1062)
T ss_pred             cccccceeeeeeccceeEE
Confidence            9999999999998766555

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=6.7e-11  Score=108.11  Aligned_cols=276  Identities=13%  Similarity=0.153  Sum_probs=198.5

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----------------eeecCCCCeeEEEECCCCcEEEEecc
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----------------VKSLPAEPIKPIAANSHGTYIAGGGQ  100 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----------------~~~~~~~~v~~~~~~~~~~~l~~~~~  100 (451)
                      ..+.|+.  |.....++|+||.| |.++|..+.+....                ...+|.+.|.-+.|+.+...|-+...
T Consensus        15 vkL~c~~--WNke~gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   15 VKLHCAE--WNKESGYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             ceEEEEE--EcccCCeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            3467777  99999999999999 99999987643211                12347889999999999999999999


Q ss_pred             CCCEEEEEcCCCcceeee--ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          101 SGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       101 dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      +|.|.||-+..|.-...+  ....+-|.+++|..||..++....||.|.+=.+..          ....-+.+.+  ...
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG----------NRIwgKeLkg--~~l  159 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG----------NRIWGKELKG--QLL  159 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc----------ceecchhcch--hec
Confidence            999999999888654433  23456789999999999999999999998876632          1111122222  123


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-------eeeee-----ecccceeEEEEC--------CCCCEEEEEeC
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-------LLRNI-----VFPSVIDAIALD--------PAEHVFYAGSR  238 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~-----~~~~~i~~~~~~--------~~~~~l~~~~~  238 (451)
                      ..+.|+++.  ..++.+-..|.+.+||....-       +....     ..+..|..+.|.        |+...|+++..
T Consensus       160 ~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~  237 (1189)
T KOG2041|consen  160 AHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA  237 (1189)
T ss_pred             cceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence            467888887  777788888999999975321       10111     123446666663        57889999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---------CcEEEEeCCCCceEEEeec
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---------GMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~  308 (451)
                      .|.+.+..-.+..        .++..  ...-.+....|++ |.+|+.++.+         +.|.+|. .-|+.+.+++.
T Consensus       238 nGr~QiMR~eND~--------~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv  306 (1189)
T KOG2041|consen  238 NGRMQIMRSENDP--------EPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV  306 (1189)
T ss_pred             CceehhhhhcCCC--------CCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence            9998887554432        22222  2236788999999 9999999864         2566776 45888999999


Q ss_pred             CCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ....|++++|-..|-.+|.+ .|+.+.+-++++
T Consensus       307 pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  307 PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             CCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            89999999999888777655 456665555543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.36  E-value=2.7e-10  Score=92.04  Aligned_cols=235  Identities=10%  Similarity=0.004  Sum_probs=155.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~   81 (451)
                      .+||.|+ ..|...+|...+.+...  +.+..+.+.|..+. ++......+..++.| .++++.+++.+....... ..-
T Consensus        85 ~~la~gG-~~g~fd~~~~~tn~~h~--~~cd~snn~v~~~~-r~cd~~~~~~i~snd-ht~k~~~~~~~s~~~~~h~~~~  159 (344)
T KOG4532|consen   85 VTLADGG-ASGQFDLFACNTNDGHL--YQCDVSNNDVTLVK-RYCDLKFPLNIASND-HTGKTMVVSGDSNKFAVHNQNL  159 (344)
T ss_pred             cEEEecc-ccceeeeecccCcccce--eeecccccchhhhh-hhcccccceeeccCC-cceeEEEEecCcccceeecccc
Confidence            5799999 99999999988665442  33444556555443 122222233444454 788888776544332221 113


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-c-ee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-L-LK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~-~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      .+.++++++|++++++.+....|..|.+.... . +. ......+.=.+..|+.....+|++..||++.|||++......
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            48899999999999999999999999886542 2 22 223334445688999999999999999999999997632211


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---------cceeEEEECCC
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDPA  229 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~  229 (451)
                            .....+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|++++...+.+..+         ..|..-+|+.+
T Consensus       240 ------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~  313 (344)
T KOG4532|consen  240 ------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE  313 (344)
T ss_pred             ------hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence                  111223345899999999998776677888878889999999998776665422         12555666666


Q ss_pred             CCEEEEEeCCCcEEEEEccC
Q 012996          230 EHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~  249 (451)
                      +..+.+.+.+ .+.-|++..
T Consensus       314 n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  314 NESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             Ccccccccch-hhheeeccc
Confidence            6555554432 234444433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.33  E-value=2.2e-09  Score=99.26  Aligned_cols=308  Identities=12%  Similarity=0.054  Sum_probs=181.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCC-------CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK   76 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~   76 (451)
                      .+++++ .+|.+.-+|..+|+.+.+.......       ...+.. .  ....+..+++++.+ |.+.-+|.++++....
T Consensus        71 ~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~v~v~~~~-g~l~ald~~tG~~~W~  145 (394)
T PRK11138         71 KVYAAD-RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSG-G--VTVAGGKVYIGSEK-GQVYALNAEDGEVAWQ  145 (394)
T ss_pred             EEEEEC-CCCeEEEEECCCCcEeeEEcCCCccccccccccccccc-c--cEEECCEEEEEcCC-CEEEEEECCCCCCccc
Confidence            455666 7899999999999998776543210       000100 0  11234455555555 8999999999888776


Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE-EEEcc--CCcEEEEeeCCCcEEEeeCcc
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-LVFSE--DGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ......+.+--.- .+..+++++.+|.+.-+|..+|+.+..+......+.. ..-+|  .+..++.++.+|.+..+|..+
T Consensus       146 ~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~  224 (394)
T PRK11138        146 TKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ  224 (394)
T ss_pred             ccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence            5544433221111 2445667788899999999999988776532111000 00111  133566777889999988876


Q ss_pred             hhhhhhhhccccc---ceeccc-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCC
Q 012996          154 VFEECESQRASHL---YLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA  229 (451)
Q Consensus       154 ~~~~~~~~~~~~~---~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~  229 (451)
                      +............   ....+. ....++    + .+   ..++.++.+|.+..+|..+|+.+........ ..+.  ..
T Consensus       225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----v-~~---~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~  293 (394)
T PRK11138        225 GQLIWQQRISQPTGATEIDRLVDVDTTPV----V-VG---GVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VD  293 (394)
T ss_pred             ChhhheeccccCCCccchhcccccCCCcE----E-EC---CEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EE
Confidence            5432211100000   000000 001111    1 12   4677778899999999999988766543321 1111  25


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      +..+++++.+|.++.+|..++.......      .. .+ ....+.... +..|+.++.||.|.+.|..+|+.+...+..
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~------~~-~~-~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~  364 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWSQS------DL-LH-RLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVD  364 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEccc------cc-CC-CcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence            6788888999999999998875221100      00 01 111111122 678889999999999999999998887654


Q ss_pred             CCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ...+..--.- .+..|+.++.||.+..++
T Consensus       365 ~~~~~s~P~~-~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        365 SSGFLSEPVV-ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CCcceeCCEE-ECCEEEEEeCCceEEEEe
Confidence            3333321111 345788888999887665

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.33  E-value=1.3e-11  Score=112.98  Aligned_cols=275  Identities=17%  Similarity=0.198  Sum_probs=186.4

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeec---CCCCeeEEEECCC--CcEEEEeccCCCEEEEEcCCC---cceee
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL---PAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG---RLLKK  117 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~---~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~  117 (451)
                      .+|.|+-+|.++.-  .+.+-|+..+-...+..   ..=.|-.+.|+|.  ..+-++......-.+|++...   .....
T Consensus        32 i~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~  109 (1081)
T KOG0309|consen   32 INPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV  109 (1081)
T ss_pred             eccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE
Confidence            88999999999885  56677877554433322   2345777888774  344455555667788988533   34456


Q ss_pred             eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996          118 WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS  196 (451)
Q Consensus       118 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~  196 (451)
                      +.+|...|+.+.|+| ....+++++.|..+..||++.          ...++..+..-...-..++|+...  ..+.+.+
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS----------p~~p~ys~~~w~s~asqVkwnyk~--p~vlass  177 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS----------PHRPFYSTSSWRSAASQVKWNYKD--PNVLASS  177 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccC----------CCcceeeeecccccCceeeecccC--cchhhhc
Confidence            789999999999998 456789999999999999976          233444555445556678888765  4566667


Q ss_pred             CCCcEEEEEcCCCc-eeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996          197 EDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT  273 (451)
Q Consensus       197 ~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  273 (451)
                      ..+.|.+||.+.|. ++..+. +-..++.+.|.. ....+.+++.||+|.+||.......        -........+|.
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e--------~~~~vtt~~piw  249 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE--------SKRTVTTNFPIW  249 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc--------cceeccccCcce
Confidence            77889999999875 444444 556677777765 4456788899999999998765321        112222345566


Q ss_pred             EEEEec-CC-EEEEEc-CCCcEEE---------EeCCC-CceEEEeecCCCCeeEEEEEecC----------ceeeeccC
Q 012996          274 CLAYST-GD-LLISGS-EDGMVRV---------WDPIT-HNIVRMFRLAKGPVNNILVVRRP----------LYLNLGSF  330 (451)
Q Consensus       274 ~~~~~~-~~-~l~s~~-~dg~i~i---------wd~~~-~~~~~~~~~~~~~v~~l~~s~~~----------~~l~~~s~  330 (451)
                      .-.+-| |. +++--. .+..+.+         |+..+ .+++++|.+|...|....|-..+          -.|+|-|.
T Consensus       250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk  329 (1081)
T KOG0309|consen  250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK  329 (1081)
T ss_pred             eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence            656666 32 222111 1123333         44433 46889999999988877775433          36899999


Q ss_pred             CCCccccccCCC
Q 012996          331 SNPHTSSRRHGS  342 (451)
Q Consensus       331 d~~i~iw~~~~~  342 (451)
                      |..+++|-+...
T Consensus       330 D~~lrlWpI~~~  341 (1081)
T KOG0309|consen  330 DQTLRLWPIDSQ  341 (1081)
T ss_pred             CCceEeeeccHH
Confidence            999999987643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.29  E-value=3.6e-09  Score=97.52  Aligned_cols=266  Identities=15%  Similarity=0.111  Sum_probs=163.6

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeecCCCCee-EEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK-PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC  127 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  127 (451)
                      .+..+++++.+ |.|..+|..+++..........+. ...  .++..+++++.+|.++.+|..+|+.+....... .+.+
T Consensus        64 ~~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~  139 (377)
T TIGR03300        64 AGGKVYAADAD-GTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLS  139 (377)
T ss_pred             ECCEEEEECCC-CeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeec
Confidence            35666777776 899999999888776654333332 222  246778888899999999999999887654322 2221


Q ss_pred             -EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996          128 -LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (451)
Q Consensus       128 -~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~  206 (451)
                       ...  .+..++.++.+|.+..||..++...........  .........+    .. .+   ..++.+..++.+..+|.
T Consensus       140 ~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~~~~~sp----~~-~~---~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       140 PPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP--ALTLRGSASP----VI-AD---GGVLVGFAGGKLVALDL  207 (377)
T ss_pred             CCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC--ceeecCCCCC----EE-EC---CEEEEECCCCEEEEEEc
Confidence             112  245677778899999999976432211110000  0000000111    11 12   36777888899999999


Q ss_pred             CCCceeeeeecccc--------eeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE
Q 012996          207 LKGRLLRNIVFPSV--------IDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (451)
Q Consensus       207 ~~~~~~~~~~~~~~--------i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  276 (451)
                      .+|+.+........        ...+.-+|  .+..+++++.+|.++.+|..+++..         -... .. ......
T Consensus       208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~---------W~~~-~~-~~~~p~  276 (377)
T TIGR03300       208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL---------WKRD-AS-SYQGPA  276 (377)
T ss_pred             cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE---------Eeec-cC-CccCce
Confidence            99987765432110        00111122  4568888899999999999876421         1111 11 111222


Q ss_pred             EecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       277 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      .. +..++.++.||.|..+|..+++.+........ .......  .+..|++++.+|.+.+++..+++.
T Consensus       277 ~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       277 VD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             Ee-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            22 67888889999999999999988766532112 2222222  467888899999999999876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.29  E-value=7e-09  Score=104.01  Aligned_cols=310  Identities=14%  Similarity=0.137  Sum_probs=191.3

Q ss_pred             CCCCeEEE----ECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-------------Cc-
Q 012996           11 ADTGIGCW----DLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-------------PQ-   72 (451)
Q Consensus        11 ~dg~i~vw----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-------------~~-   72 (451)
                      .+|.|.+.    |..+....    ....-..+|.+++  ||||+..++.+..+ +++.+-+-+-             +. 
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~E----~VG~vd~GI~a~~--WSPD~Ella~vT~~-~~l~~mt~~fd~i~E~~l~~~~~~~~  167 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEIE----IVGSVDSGILAAS--WSPDEELLALVTGE-GNLLLMTRDFDPISEVPLDSDDFGES  167 (928)
T ss_pred             CCceEEEEEccCCCCCceeE----EEEEEcCcEEEEE--ECCCcCEEEEEeCC-CEEEEEeccceEEEEeecCccccCCC
Confidence            45778888    44333221    1123447899999  99999999999887 7777754210             00 


Q ss_pred             ---------eeee--------------ec-----------CCCCeeEEEECCCCcEEEEecc---C---CCEEEEEcCCC
Q 012996           73 ---------VEVK--------------SL-----------PAEPIKPIAANSHGTYIAGGGQ---S---GDIYMWEVASG  112 (451)
Q Consensus        73 ---------~~~~--------------~~-----------~~~~v~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~  112 (451)
                               ....              ..           ..+.-..|+|-.||.|+|+.+.   .   ..++||+- .|
T Consensus       168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG  246 (928)
T PF04762_consen  168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EG  246 (928)
T ss_pred             ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-Cc
Confidence                     0000              00           1224467889999999998764   3   46999994 57


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                      .+..+...-.+--.+++|-|.|+++++...   ...|.+|.-...        ....+...+......|..+.|+.++  
T Consensus       247 ~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL--------rhgeF~l~~~~~~~~v~~l~Wn~ds--  316 (928)
T PF04762_consen  247 ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL--------RHGEFTLRFDPEEEKVIELAWNSDS--  316 (928)
T ss_pred             eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc--------EeeeEecCCCCCCceeeEEEECCCC--
Confidence            665554444444457899999999998765   345666764221        1222222333456788999999998  


Q ss_pred             eEEEEeeCCCcEEEEEcCCCcee--eeee--cccceeEEEECC-CCCEEEEEeCCCcEEEEEccC----CCCCCC-----
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLL--RNIV--FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNA----ESPSTS-----  255 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~--~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~----~~~~~~-----  255 (451)
                      ..|+....|. |.+|-..+-.-.  +.+.  ....+..+.|+| +...|.+.+.+|.+..+++.-    ......     
T Consensus       317 ~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~  395 (928)
T PF04762_consen  317 EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGT  395 (928)
T ss_pred             CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceE
Confidence            7888876555 999998775432  2333  234455699999 455677777777776655421    110000     


Q ss_pred             ----------------CCCcee--eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCce--------EEEee-
Q 012996          256 ----------------SYGMHI--IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--------VRMFR-  307 (451)
Q Consensus       256 ----------------~~~~~~--~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~-  307 (451)
                                      ...+.+  ...+ .-..+|.+++|++ +..+++-..||.|.+|.......        ...+. 
T Consensus       396 vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  474 (928)
T PF04762_consen  396 VAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL  474 (928)
T ss_pred             EEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc
Confidence                            000011  1111 2357899999999 76789999999999998543221        11111 


Q ss_pred             ---------cCCCCeeEEEEEecCceeeeccCC---CCccccccC
Q 012996          308 ---------LAKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRH  340 (451)
Q Consensus       308 ---------~~~~~v~~l~~s~~~~~l~~~s~d---~~i~iw~~~  340 (451)
                               .....+..++|..+..+++....+   ..+.+++..
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  519 (928)
T PF04762_consen  475 DSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID  519 (928)
T ss_pred             ccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence                     123467889998888777665554   456666653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=6.9e-09  Score=106.08  Aligned_cols=252  Identities=10%  Similarity=0.038  Sum_probs=154.2

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeec-C-------------CCCeeEEEECCCCcEEEEe-ccCCCEEEEEcC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-------------AEPIKPIAANSHGTYIAGG-GQSGDIYMWEVA  110 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~  110 (451)
                      +.+.+..+.++...++.|++||........... .             -.....|+++++++.|+++ ..++.|+++|+.
T Consensus       575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~  654 (1057)
T PLN02919        575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV  654 (1057)
T ss_pred             EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence            555544444444444899999986543322211 0             1236889999988866554 445679999987


Q ss_pred             CCcceeeeccc-----------------cCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996          111 SGRLLKKWHAH-----------------YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT  172 (451)
Q Consensus       111 ~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  172 (451)
                      ++. +.++.+-                 -.....++|+| ++..+++.+.++.|++||..++....-.  ... ......
T Consensus       655 ~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~--G~G-~~~~~~  730 (1057)
T PLN02919        655 NET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS--GDG-YERNLN  730 (1057)
T ss_pred             CCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe--cCC-ccccCC
Confidence            654 3232110                 12346899999 5666777778889999998653211000  000 000000


Q ss_pred             C------CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-----------e-----------cccceeEE
Q 012996          173 G------HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-----------V-----------FPSVIDAI  224 (451)
Q Consensus       173 ~------~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------~-----------~~~~i~~~  224 (451)
                      +      .-....++++++++. .++++-+.++.|++||+.++......           .           .-.....+
T Consensus       731 g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        731 GSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence            1      112456789999873 35666677899999999876532111           0           00124688


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC----ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +++++|..+++-+.++.|++||..+.........    ..--....+.-.....|++++ |+++++-+.++.|++||+.+
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            9999999888888999999999876532100000    000000112234678899999 98888889999999999998


Q ss_pred             Cce
Q 012996          300 HNI  302 (451)
Q Consensus       300 ~~~  302 (451)
                      ++.
T Consensus       890 ~~~  892 (1057)
T PLN02919        890 GEA  892 (1057)
T ss_pred             Ccc
Confidence            765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.26  E-value=9.7e-11  Score=100.04  Aligned_cols=167  Identities=18%  Similarity=0.197  Sum_probs=115.2

Q ss_pred             eeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe-eEEEEeeCCCcEEE
Q 012996          125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTCKV  203 (451)
Q Consensus       125 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~~~d~~i~i  203 (451)
                      ...+..++.+++++++..+....++++.....       ...+..... -...-+++.+..+... ...-..+....+.+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di  136 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------GAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDI  136 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-------cceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeee
Confidence            34456677888888888888877777754211       011111111 1112233334333310 22223444455666


Q ss_pred             EEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996          204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (451)
Q Consensus       204 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l  283 (451)
                      |....+.....+.|-+.+..++|+||+++++++..|..|++-......        ..-.-.-||..-|..++.-++..|
T Consensus       137 ~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~~~~~L  208 (390)
T KOG3914|consen  137 LSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLTDNYLL  208 (390)
T ss_pred             ecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeeccCcee
Confidence            666667777777788999999999999999999999999998776642        112234579999999999988889


Q ss_pred             EEEcCCCcEEEEeCCCCceEEEee
Q 012996          284 ISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       284 ~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      ++||.|++|++||+.+|+.+.++.
T Consensus       209 lS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  209 LSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eecCCCCcEEEEecccCCcccccc
Confidence            999999999999999999987765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=5.2e-11  Score=105.69  Aligned_cols=239  Identities=15%  Similarity=0.118  Sum_probs=159.4

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      ..|.+.|..++--.+.+-+++++.|.+|++|.++..       .+..+++.|..+|.++.|-.+-++++++  ||.|.+|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            347778888877777888999999999999998642       3566788999999999999888877765  8899999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCCceeeeee------ccccee
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGRLLRNIV------FPSVID  222 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~------~~~~i~  222 (451)
                      |.--+.....         .......+.+..+..-++-...+++. ++...+|+++|.+..+-...+.      .+..+.
T Consensus       810 DPFigr~Laq---------~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  810 DPFIGRLLAQ---------MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             cccccchhHh---------hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            9733211100         01111223333333334322234444 4788999999999987766654      235688


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE-EeCCCC
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV-WDPITH  300 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i-wd~~~~  300 (451)
                      +++..|.|+.++++-.+|.|.+.|.+++.         .+...+.-......++- | ...|+....|.++.+ |..-++
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~---------vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGK---------VINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCc---------eeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence            99999999999999999999999999974         23333222223333332 4 667777778888888 887777


Q ss_pred             ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ....+.+....+..-+.  .-|..|+++...+.+.+|.
T Consensus       951 imh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  951 IMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             eeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence            66666654433322111  2244555555555555554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.25  E-value=1.1e-08  Score=89.68  Aligned_cols=218  Identities=16%  Similarity=0.124  Sum_probs=153.5

Q ss_pred             EEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc------cc-----CCeeEEE-Ecc-CCcEEEEeeCCCcEEEeeC
Q 012996           85 PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA------HY-----RAVTCLV-FSE-DGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~-----~~v~~~~-~~~-~~~~l~s~~~dg~i~vwd~  151 (451)
                      +=..+.||+.++- +..|.|++||..+.++...--+      ..     .+..-+. |++ +|.+++..|. |...+.+.
T Consensus       271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~  348 (668)
T COG4946         271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP  348 (668)
T ss_pred             ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence            3345678888776 5568899999876643321100      00     1111111 444 6888888776 57777765


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      ..           ..  ...-+|.+.|.-..+..++  +-++.|..|| .+-++|..+++.......-+.|.++..+|+|
T Consensus       349 ~~-----------~~--~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG  413 (668)
T COG4946         349 WD-----------GY--SIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG  413 (668)
T ss_pred             CC-----------Ce--eEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC
Confidence            32           11  1123567778777777776  6788899998 8999999988877666677899999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC----cEEEEeCCCCceEEE
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG----MVRVWDPITHNIVRM  305 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg----~i~iwd~~~~~~~~~  305 (451)
                      ++++++.....|.++|+.++..         ...-+...+-|+...|+| ++++|-+--+|    .|+++|+..++....
T Consensus       414 K~~vvaNdr~el~vididngnv---------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         414 KKVVVANDRFELWVIDIDNGNV---------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             cEEEEEcCceEEEEEEecCCCe---------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            9999999999999999999852         122233457899999999 99999887766    599999988776654


Q ss_pred             eecCCCCeeEEEEEecCceeeecc
Q 012996          306 FRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       306 ~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      -. ..+.=.+=+|.||+++|.--|
T Consensus       485 TT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         485 TT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cC-CcccccCcccCCCCcEEEEEe
Confidence            33 233334558899999885543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=5.2e-09  Score=106.93  Aligned_cols=241  Identities=15%  Similarity=0.095  Sum_probs=151.2

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCC--C---------CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCA--S---------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ   72 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~--~---------~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~   72 (451)
                      ++++-. .++.|.+||.. |..+..+....  +         .-..-..++  +.+++..+.++...++.|+++|..++.
T Consensus       582 lyVaDs-~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~Ir~id~~~~~  657 (1057)
T PLN02919        582 LFISDS-NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHALREIDFVNET  657 (1057)
T ss_pred             EEEEEC-CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCceEEEEecCCCE
Confidence            445555 78899999965 55544443211  0         011223444  888888766665544889999987766


Q ss_pred             eeeeecC-----------------CCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeecc--------------
Q 012996           73 VEVKSLP-----------------AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHA--------------  120 (451)
Q Consensus        73 ~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------  120 (451)
                      .......                 -.....++++| ++.++++.+.++.|++||..++... .+.+              
T Consensus       658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~  736 (1057)
T PLN02919        658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTS  736 (1057)
T ss_pred             EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCcccc
Confidence            5432110                 12346899999 5666677777889999998776432 1111              


Q ss_pred             -ccCCeeEEEEccCCcEE-EEeeCCCcEEEeeCcchhhhhhhhcc--cccceecccC--------CcCceeEEEEeecCC
Q 012996          121 -HYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECESQRA--SHLYLHSFTG--------HTLRITDIVIGYGGV  188 (451)
Q Consensus       121 -~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~i~~i~~~~~~~  188 (451)
                       .-.....++++|+++.| ++-+.++.|++||+.++.........  .......+..        .-....++++++++ 
T Consensus       737 ~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-  815 (1057)
T PLN02919        737 TSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-  815 (1057)
T ss_pred             ccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-
Confidence             11245679999998844 45566789999998653210000000  0000000100        11123578888887 


Q ss_pred             eeEEEEeeCCCcEEEEEcCCCceeeeeec--------------ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          189 SATIVSASEDRTCKVWSLLKGRLLRNIVF--------------PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                       .++++-+.++.|++||..++........              -.....++++++|+.+++-+.++.|++||+.+..
T Consensus       816 -~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        816 -QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             -cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence             7888888999999999987765533221              1246789999999988888899999999998764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.24  E-value=2.6e-10  Score=94.11  Aligned_cols=258  Identities=18%  Similarity=0.297  Sum_probs=170.1

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-----ceeeecccc------------CCeeEEEEccCC--cEEEE
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS  139 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s  139 (451)
                      ..+.|+++.|...|.||++|...|.|.+|.-....     ....+++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45689999999999999999999999999854432     223355554            357888887643  45777


Q ss_pred             eeCCCcEEEeeCcchhhhhh------------------h------h--cccc-----ccee-cccCCcCceeEEEEeecC
Q 012996          140 GSEDGCVRIWSLLTVFEECE------------------S------Q--RASH-----LYLH-SFTGHTLRITDIVIGYGG  187 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~------------------~------~--~~~~-----~~~~-~~~~~~~~i~~i~~~~~~  187 (451)
                      .+.|.+|++|.+........                  .      .  ....     .+.+ .-..|+-.|.++.+..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            78899999999865310000                  0      0  0000     0011 114577778888887775


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCceeeeee---------cccceeEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                        ..+++ +.|-.|.+|++.-......+.         ....|++..|+|. ...+.-.+..|.|++-|++....-....
T Consensus       185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence              44444 467789999986433222221         2345888999994 5667777889999999998543211100


Q ss_pred             -------CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCC------------Ce---
Q 012996          258 -------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKG------------PV---  313 (451)
Q Consensus       258 -------~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~------------~v---  313 (451)
                             ......-+.+-...|..+.|++ |+++++-+. -+|+|||++. ..++.++..|..            .|   
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence                   0001112233446788999999 888887654 4799999985 467888875532            22   


Q ss_pred             eEEEEEecCceeeeccCCCCccccccC
Q 012996          314 NNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       314 ~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ..+.||-|...+.+|+..+...++-..
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             EEEEecCCcccccccccccceeeeccc
Confidence            347789999999999998888877643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.24  E-value=3.2e-08  Score=85.31  Aligned_cols=223  Identities=17%  Similarity=0.159  Sum_probs=147.0

Q ss_pred             EEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc-cCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           85 PIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        85 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      ++.|.+ ++.++++-...+.|+.|+..++.... +....  ...+.+. +++. |+.+... .+.++|+.++        
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g--------   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTG--------   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTT--------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCC--------
Confidence            577887 77777887778999999987775433 22222  6777887 6655 4554554 4566687552        


Q ss_pred             ccccceecc--cC-CcCceeEEEEeecCCeeEEEEeeCC--------CcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996          163 ASHLYLHSF--TG-HTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (451)
Q Consensus       163 ~~~~~~~~~--~~-~~~~i~~i~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (451)
                       ....+...  .. .....+++++.+++  ++.++....        |.|..++.. ++.......-...+.++|+|+++
T Consensus        71 -~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   71 -KVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             -EEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred             -cEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence             22222222  22 45677889999988  666665543        567888876 55544444556678999999999


Q ss_pred             EEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          232 VFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       232 ~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      .|++ -+..+.|..|++.......  ........+....+..-.+++.. |++.++....+.|.++|.. |+.+..+...
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             heeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence            8774 5677889999997543100  00122223333334578899999 8888887789999999977 9999999887


Q ss_pred             CCCeeEEEEE-ecCceeee
Q 012996          310 KGPVNNILVV-RRPLYLNL  327 (451)
Q Consensus       310 ~~~v~~l~~s-~~~~~l~~  327 (451)
                      ...+++++|. ++...|..
T Consensus       224 ~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEE
T ss_pred             CCCEEEEEEECCCCCEEEE
Confidence            6789999995 56555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.23  E-value=8e-09  Score=90.41  Aligned_cols=172  Identities=12%  Similarity=0.042  Sum_probs=132.2

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC-CEEEEEcCCCcceeeeccccCCeeE
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG-DIYMWEVASGRLLKKWHAHYRAVTC  127 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~  127 (451)
                      +|.+++..+.  |...+.+...+-. +...+...|.-..+.-++.-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus       331 ~Gd~ia~VSR--GkaFi~~~~~~~~-iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSR--GKAFIMRPWDGYS-IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEec--CcEEEECCCCCee-EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence            5777777777  7888877554433 4455667799999988888999999999 799999877664 445567788999


Q ss_pred             EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC----cEEE
Q 012996          128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKV  203 (451)
Q Consensus       128 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~----~i~i  203 (451)
                      +..+++|++++.+.....+-+.|+.++           .....-....+-|+.+.|++++  ++++-+--+|    .|++
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididng-----------nv~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~Ikl  473 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNG-----------NVRLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSIKL  473 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCC-----------CeeEecccccceeEEEEEcCCc--eeEEEecCcceeeeeEEE
Confidence            999999999999998889999999663           1222223456789999999998  8988776655    6899


Q ss_pred             EEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996          204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       204 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (451)
                      +|+..++........+.-.+-+|.|++++|+--+
T Consensus       474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            9999888776655555556778999999887654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.20  E-value=7.4e-09  Score=83.94  Aligned_cols=246  Identities=14%  Similarity=0.055  Sum_probs=158.8

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECC-----CCcEEEEeccCCCEEEEEcCCCcce-eeeccccCCeeEEEEccC-
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSED-  133 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~-  133 (451)
                      ..+.+|+.-+........    -..+.|.|     ...+||.|+..|...+|...+.+.. +....|...|+-+.=..+ 
T Consensus        52 ~sv~i~~~y~N~~~iv~~----y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~  127 (344)
T KOG4532|consen   52 ISVPINSHYSNPKGIVEF----YTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL  127 (344)
T ss_pred             eeeEeccccCCchhhEEe----eecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc
Confidence            567777765443111111    13444544     4568999999999999999866543 333445444432221111 


Q ss_pred             CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc--CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-
Q 012996          134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-  210 (451)
Q Consensus       134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-  210 (451)
                      ..-+..++.|.++++.++.-.         ...    +..|.  ..+.++.+++++  .++++.+....|..|.+.... 
T Consensus       128 ~~~~~i~sndht~k~~~~~~~---------s~~----~~~h~~~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~se  192 (344)
T KOG4532|consen  128 KFPLNIASNDHTGKTMVVSGD---------SNK----FAVHNQNLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESE  192 (344)
T ss_pred             ccceeeccCCcceeEEEEecC---------ccc----ceeeccccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccc
Confidence            223667788889999888441         111    11232  237788888888  899999999999999987542 


Q ss_pred             eeeee---ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---CCEEE
Q 012996          211 LLRNI---VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLI  284 (451)
Q Consensus       211 ~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~  284 (451)
                      -+..+   .....-.+..|+.....+|++..||.+.|||++.......    ....+-..|.+.+..+.|++   -++|+
T Consensus       193 y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf  268 (344)
T KOG4532|consen  193 YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA----EISSTRPHHNGAFRVCRFSLYGLLDLLF  268 (344)
T ss_pred             eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh----hhcccCCCCCCceEEEEecCCCcceEEE
Confidence            22222   1445567889999999999999999999999988642111    11223445899999999998   34566


Q ss_pred             EEcCCCcEEEEeCCCCceEEEeecCCC--------CeeEEEEEecCceeeecc
Q 012996          285 SGSEDGMVRVWDPITHNIVRMFRLAKG--------PVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       285 s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~l~~s~~~~~l~~~s  329 (451)
                      -.-.-+.+.+-|++++...+.+.....        .|..-.|+.++.-+.+.+
T Consensus       269 ~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  269 ISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             EecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence            555667899999999877665543222        266666666665554443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.18  E-value=4e-10  Score=90.74  Aligned_cols=195  Identities=17%  Similarity=0.196  Sum_probs=119.9

Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcc------------eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRL------------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      ++.+.++.+ ..|+++..++.+.....-.+.+            ...+..|.++-.+-+.+-.++-+++++.||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            555555543 3466666666655554433322            223333443333333333456799999999999999


Q ss_pred             Ccchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEee-----CCCcEEEEEcCCCceee-eeecccceeE
Q 012996          151 LLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS-----EDRTCKVWSLLKGRLLR-NIVFPSVIDA  223 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~-~~~~~~~i~~  223 (451)
                      .+.....          .+... .|.+. .+.+....+  +.+.++.     .-+..+.|+++..+.+. .......+.+
T Consensus       118 ~~~~~~~----------~~~i~~~~~~~-as~~~~~~~--~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  118 TDKDLAL----------MSRIPSIHSGS-ASRKICRHG--NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             chHHHhh----------hhhcccccccc-cccceeecc--cEEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            8652111          11111 11111 122222222  3333322     22345667665433222 1223344999


Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCC
Q 012996          224 IALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       224 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~  299 (451)
                      ++-+| ....+++|+.||.+-+||.+...        .+...+..|..+|+.+-|+|  +..|++++.||.+.-||..+
T Consensus       185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQQHLVCCGTDDGIVGLWDARNVA--------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhCCcccccEEEEecCCCeEEEEEccccc--------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99999 45677788999999999999874        56778889999999999999  88999999999999999763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=4e-11  Score=106.43  Aligned_cols=215  Identities=16%  Similarity=0.222  Sum_probs=155.5

Q ss_pred             eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      +..+.+|...|..++--.+.+-+++++.|.+|++|.++.....    .....+..++..|+.+|.++.|-.+-  +++++
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~S  801 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----IGTSACQFTYQAHKKPIHDIGFLADL--RSIAS  801 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----cccceeeeEhhhccCcccceeeeecc--ceeee
Confidence            4567899999999887777888999999999999999653211    12334667889999999999998875  45554


Q ss_pred             eeCCCcEEEEEcCCCceeeeee---cccceeEEEECC--CCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP--AEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (451)
                        .||.|.+||.--++++..+.   ..+.+..+..-|  +...+.+| +...+++++|.+.......    -.+..-.+.
T Consensus       802 --cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E----~kVcna~~P  875 (1034)
T KOG4190|consen  802 --CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE----LKVCNAPGP  875 (1034)
T ss_pred             --ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee----EEeccCCCC
Confidence              58899999998887776443   233444444434  34455555 6788999999987642110    112223445


Q ss_pred             CcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc-cccCCC
Q 012996          269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS-SRRHGS  342 (451)
Q Consensus       269 ~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i-w~~~~~  342 (451)
                      ...+.+++..+ |+.++++-.+|.|.+.|.++|+.+..++........++ .|..+.|+....|.++.+ |-...+
T Consensus       876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            57789999999 99999999999999999999999988776544444443 355678888888888877 765444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.18  E-value=4.5e-08  Score=80.73  Aligned_cols=234  Identities=13%  Similarity=0.074  Sum_probs=136.1

Q ss_pred             EEECCCCcEEEEeccCCCEEEEEcCCC--cceeeecccc---CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           86 IAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHY---RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      ++.+++|+.||+ -.|..|.|-..++.  ..+...+.+.   -.=..++|+||+.+|+.+...|+|++||+.....-.. 
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I-   80 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI-   80 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc-
Confidence            567889998887 45667777765543  2223332222   2346799999999999999999999999953111000 


Q ss_pred             hcccccceecccCCcCceeEEEEeecCC----eeEEEEeeCCCcEEEEEcCC-----Cceeeeee----cccceeEEEEC
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGV----SATIVSASEDRTCKVWSLLK-----GRLLRNIV----FPSVIDAIALD  227 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~----~~~~i~~~~~~  227 (451)
                         .. .......-...|.++.|.....    ...|++-..+|.++-|-+..     .+....+.    ++..|.++.++
T Consensus        81 ---~p-~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   81 ---PP-AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             ---Cc-ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence               00 0001112345677776654321    13567777788888776532     23333443    47789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE---ecCCEEEEEcCCCc------EEEEeCC
Q 012996          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY---STGDLLISGSEDGM------VRVWDPI  298 (451)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~l~s~~~dg~------i~iwd~~  298 (451)
                      |..++|++|+....      ..+.             -.+....+++=..   +|--..++...|+.      -.+|.+-
T Consensus       157 p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~  217 (282)
T PF15492_consen  157 PKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP  217 (282)
T ss_pred             CCCCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecc
Confidence            99999888875432      0000             0011112222111   12111122222221      2344443


Q ss_pred             CCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      +.+...........|..|..||||..||+...+|.+.+|++..-.+
T Consensus       218 ~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  218 SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            3322222223456899999999999999999999999999876443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=8.4e-09  Score=95.59  Aligned_cols=247  Identities=14%  Similarity=0.120  Sum_probs=180.2

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCC------------cEEEEeeCCCcEE
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG------------SFLISGSEDGCVR  147 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~s~~~dg~i~  147 (451)
                      ...-.+++|+|.| ++|.|+. ..|.+.|..+.+.+..+.-|...|+.+.|.|-.            -.|+++...|.|.
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            3446788999876 5666664 479999999999999999999999999998721            2467788889999


Q ss_pred             EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC--eeEEEEeeCCCcEEEEEcCCCceeeeeec-ccceeEE
Q 012996          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVF-PSVIDAI  224 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~i~~~  224 (451)
                      +||...           ...+..+..|..++..++|-+..+  ...++.-....++.+|+..+|+....... +....|+
T Consensus        93 l~d~~~-----------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f  161 (1062)
T KOG1912|consen   93 LVDFVL-----------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCF  161 (1062)
T ss_pred             EEEehh-----------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeee
Confidence            999954           334455677888999999987543  25677778888999999999999888774 4455669


Q ss_pred             EECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc----------------c---------eeEEEEe
Q 012996          225 ALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK----------------A---------VTCLAYS  278 (451)
Q Consensus       225 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------v~~~~~~  278 (451)
                      .++| +.+.+..-+..|.+.+.+.-.........  +..+....|..                .         ...++|+
T Consensus       162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg--k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG--KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             eeCCCCcceEEEEccCceEEEEeccCCCCCCCCc--eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            9999 77788888888888877764433211111  11111111111                0         1235678


Q ss_pred             c-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC--ceeeeccCCCCccccccCC
Q 012996          279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP--LYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       279 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~s~d~~i~iw~~~~  341 (451)
                      | -+.++-......+.++|++-..++..+....+.+.-+.+-|++  ..|.+.-.||.+.+|-.+.
T Consensus       240 p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  240 PHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            8 3333333456679999999999999988888888888888877  4688899999999998764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.15  E-value=7.4e-10  Score=89.21  Aligned_cols=194  Identities=16%  Similarity=0.200  Sum_probs=121.0

Q ss_pred             CeEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEec--------ceEeeccCcccCCCCCCccEEEEECCCCc
Q 012996            1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG--------QRFLASSQLREQPSASSGSILYWSWSKPQ   72 (451)
Q Consensus         1 ~e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~l~~~~~d~g~i~vw~~~~~~   72 (451)
                      ||..|+++. .++.+......++.+...... ....+...+.+        ...+..+..+++++.| |.+.+.+.+...
T Consensus        46 ~~~~lf~~e-~~~~~ss~g~~r~~~~~~~~r-t~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d-g~~~v~s~~~~~  122 (319)
T KOG4714|consen   46 AEYILFTGE-TSSQIISLGKGRGRCISLWER-DDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD-GSLAVFSTDKDL  122 (319)
T ss_pred             hhheeeccc-chhheeeeccceEEEechhhc-ccCcCceeeeeccCCCCCcccccccCCceEecCCC-ceEEEEechHHH
Confidence            567788888 888887777655544432211 11222222222        0023346777888888 999999987622


Q ss_pred             eeeeecC--CCCeeEEEECCCCcEEEEecc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCC
Q 012996           73 VEVKSLP--AEPIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDG  144 (451)
Q Consensus        73 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg  144 (451)
                      .......  ...-.+..+...++++.++.-     -+..+.|+++..+.+..-......|++++-+| ..+.+++|+.||
T Consensus       123 ~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg  202 (319)
T KOG4714|consen  123 ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG  202 (319)
T ss_pred             hhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCC
Confidence            1111111  011122223334555554321     23466676654433322222334599999999 556678889999


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~  208 (451)
                      .+-+||.+..          ..+...+..|+.+++.+.|+|... ..|++++.||.+.-||..+
T Consensus       203 ~~~l~d~rn~----------~~p~S~l~ahk~~i~eV~FHpk~p-~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  203 IVGLWDARNV----------AMPVSLLKAHKAEIWEVHFHPKNP-EHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEEEEEcccc----------cchHHHHHHhhhhhhheeccCCCc-hheeEecCCCcEEEEcCCC
Confidence            9999999762          445667888999999999999765 7899999999999999764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.14  E-value=4.9e-10  Score=95.80  Aligned_cols=156  Identities=18%  Similarity=0.214  Sum_probs=110.3

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCce----eeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeee
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~  118 (451)
                      +++.++++|++..+ ....++++.....    .....-...-+++.|..+.....++..   ...+.+|....+.+. .+
T Consensus        70 ~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~  147 (390)
T KOG3914|consen   70 TSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PI  147 (390)
T ss_pred             cCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hh
Confidence            77889999888877 6666666543321    111222344455556555555544443   344555555444444 33


Q ss_pred             ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASE  197 (451)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~  197 (451)
                      -+|-..++.++|+||+++++++..|..|++-....           ...+.. +.||+..|..+++.++   ..|++++.
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-----------~f~IesfclGH~eFVS~isl~~~---~~LlS~sG  213 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----------TFVIESFCLGHKEFVSTISLTDN---YLLLSGSG  213 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-----------ccchhhhccccHhheeeeeeccC---ceeeecCC
Confidence            47999999999999999999999999999988732           222333 4579999999999877   57999999


Q ss_pred             CCcEEEEEcCCCceeeeeec
Q 012996          198 DRTCKVWSLLKGRLLRNIVF  217 (451)
Q Consensus       198 d~~i~iwd~~~~~~~~~~~~  217 (451)
                      |+++++||+.+|+.+..+..
T Consensus       214 D~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             CCcEEEEecccCCcccccch
Confidence            99999999999998876653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.14  E-value=5.1e-10  Score=102.85  Aligned_cols=224  Identities=18%  Similarity=0.263  Sum_probs=162.4

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeecccc--CCeeEEEEccCC--cEEEEeeCCCcEEEeeCcc
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHY--RAVTCLVFSEDG--SFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~--~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~  153 (451)
                      -.+++..+.++|.|+-+|.++.-| +.+.|+... ....-+ .|.  -.|-.+.|+|..  .+-++......-.+|++..
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            357888999999999999988876 666777544 333222 232  246678888743  2333334445667899855


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCC
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEH  231 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~  231 (451)
                      .        ........+.+|...|+++.|.+... ..+++++.|-.+..||+++... +..+. -......+.|+-...
T Consensus       101 s--------s~~aIef~lhghsraitd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p  171 (1081)
T KOG0309|consen  101 S--------SSNAIEFVLHGHSRAITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP  171 (1081)
T ss_pred             C--------CccceEEEEecCccceeccccCCCCC-cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCc
Confidence            1        23344556789999999999998765 7899999999999999998653 33333 456677889988666


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce--EEEee
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI--VRMFR  307 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~  307 (451)
                      .+.+.+....|++||++.+.        .++..+++|...|+.+.|..  ...+.+++.||+|++||......  -+++ 
T Consensus       172 ~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-  242 (1081)
T KOG0309|consen  172 NVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-  242 (1081)
T ss_pred             chhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-
Confidence            66666777899999999886        77889999999999999988  77899999999999999875432  2222 


Q ss_pred             cCCCCeeEEEEEecC
Q 012996          308 LAKGPVNNILVVRRP  322 (451)
Q Consensus       308 ~~~~~v~~l~~s~~~  322 (451)
                      .-..+|+.-.+.|-|
T Consensus       243 tt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  243 TTNFPIWRGRYLPFG  257 (1081)
T ss_pred             cccCcceeccccccC
Confidence            224566666666644

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=3.3e-10  Score=94.86  Aligned_cols=156  Identities=17%  Similarity=0.250  Sum_probs=122.6

Q ss_pred             cCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-----cceeeeccccCCeeEE
Q 012996           54 EQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-----RLLKKWHAHYRAVTCL  128 (451)
Q Consensus        54 ~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~  128 (451)
                      ++.|.+ ..|.+-|+.++-..... ....|.++.|...++++..|+.+|.|..+|++.+     .+...+ -|...|+++
T Consensus       228 fs~G~s-qqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLS-QQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             eccccc-ceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            444554 68888888877654433 5678999999999999999999999999999865     333334 488999999


Q ss_pred             EEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996          129 VFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (451)
Q Consensus       129 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~  207 (451)
                      ..-. ++++|++.+.+|.|++||++..        ....-+..+.+|...-.-+-++-+..+..+++++.|...+||.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~--------K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRAT--------KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhh--------hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            8776 7889999999999999999752        222347778888776666666555555789999999999999999


Q ss_pred             CCceeeeeecccc
Q 012996          208 KGRLLRNIVFPSV  220 (451)
Q Consensus       208 ~~~~~~~~~~~~~  220 (451)
                      .+..+.+++.+..
T Consensus       377 ~ghLl~tipf~~s  389 (425)
T KOG2695|consen  377 SGHLLCTIPFPYS  389 (425)
T ss_pred             cCceeeccCCCCc
Confidence            9999999886544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.08  E-value=1.4e-07  Score=80.99  Aligned_cols=222  Identities=17%  Similarity=0.128  Sum_probs=136.0

Q ss_pred             CccEEEEECCCCceeeeecCCCCeeEEE--ECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           60 SGSILYWSWSKPQVEVKSLPAEPIKPIA--ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        60 ~g~i~vw~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      +|.|..||..+++...............  ..+++..+++++.++.|+.||..+|+.+..+.. .+.+..... .++..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccccc
Confidence            4899999999888877765432233333  333566777778899999999999998877764 222222122 234566


Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF  217 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  217 (451)
                      +.++.++.+..+|..++.......      ........ ..........+  ..++.+..++.|..+|+.+|+.+.....
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~------~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIY------LTSSPPAG-VRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEE------E-SSCTCS-TB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccceeeeEecccCCcceeeeec------cccccccc-cccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            777788899999986643211100      00000011 11122222224  6788888899999999999999887763


Q ss_pred             cc-c----------eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996          218 PS-V----------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (451)
Q Consensus       218 ~~-~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s  285 (451)
                      .. .          +..-....++ .+++++.++.+..+|+.++.         .+-...  ...+..+ ... +..|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~---------~~w~~~--~~~~~~~-~~~~~~~l~~  217 (238)
T PF13360_consen  151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE---------KLWSKP--ISGIYSL-PSVDGGTLYV  217 (238)
T ss_dssp             STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE---------EEEEEC--SS-ECEC-EECCCTEEEE
T ss_pred             CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC---------EEEEec--CCCccCC-ceeeCCEEEE
Confidence            22 1          1122222234 77778878864444888874         122221  2223331 223 788888


Q ss_pred             EcCCCcEEEEeCCCCceEEE
Q 012996          286 GSEDGMVRVWDPITHNIVRM  305 (451)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~  305 (451)
                      ++.++.|..||+.+++.+-+
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999999987643

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.9e-07  Score=86.12  Aligned_cols=224  Identities=12%  Similarity=0.033  Sum_probs=129.6

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcE-EEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTY-IAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF  136 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  136 (451)
                      ..|.+=|.+.......... .....-.|+|||+. ++..+.+   ..|+++|+.+++...... ..+......|+|||+.
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            4566656654443323223 37788999999985 5544333   459999998886554433 4455667889999987


Q ss_pred             EEE-eeCC--CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC--cEEEEEcCCCce
Q 012996          137 LIS-GSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR--TCKVWSLLKGRL  211 (451)
Q Consensus       137 l~s-~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~  211 (451)
                      ++. .+.+  ..|.++|+.++           . ...+..+........|+|++. .++++....+  .|++.|+.+++.
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g-----------~-~~~LT~~~~~d~~p~~SPDG~-~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTK-----------T-LTQITNYPGIDVNGNFVEDDK-RIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCC-----------c-EEEcccCCCccCccEECCCCC-EEEEEECCCCCceEEEEECCCCCe
Confidence            664 3334  45777777441           1 222333333233457999984 3444443334  577888887765


Q ss_pred             eeeeecccceeEEEECCCCCEEEEEeCC---------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996          212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (451)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  281 (451)
                      .+......  ....|+|+|+.++.....         ..|++.|+.++..       .   .+... .......|+| |+
T Consensus       314 ~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------~---~LT~~-~~~~~p~~SPDG~  380 (419)
T PRK04043        314 EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------R---RLTAN-GVNQFPRFSSDGG  380 (419)
T ss_pred             EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------E---ECCCC-CCcCCeEECCCCC
Confidence            43332221  234899999988776543         3678888876531       1   22222 2233578999 88


Q ss_pred             EEEEEcCC-C--cEEEEeCCCCceEEEeecCCCCe
Q 012996          282 LLISGSED-G--MVRVWDPITHNIVRMFRLAKGPV  313 (451)
Q Consensus       282 ~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v  313 (451)
                      .++..+.+ +  .+.+.++. +.....+....+.+
T Consensus       381 ~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~  414 (419)
T PRK04043        381 SIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKI  414 (419)
T ss_pred             EEEEEEccCCcEEEEEEecC-CCeeEEeecCCCcc
Confidence            76665543 2  36666664 33333444333433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.7e-09  Score=93.83  Aligned_cols=219  Identities=17%  Similarity=0.187  Sum_probs=161.7

Q ss_pred             ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CC
Q 012996          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR  199 (451)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~  199 (451)
                      |...|+.+..+ -.+++.+++.||.++.|--..        ......+..+..|.+.|.+++.+.++  .++.|.+. |.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dh   76 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------ISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDH   76 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------ccceeehhhhHHHHHHHHhhhccccc--eeEeeccCccc
Confidence            77777776554 457899999999999998632        12344567778899999999999988  78888777 99


Q ss_pred             cEEEEEcCCCceeeeeecccceeEEEECC-CC---CEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996          200 TCKVWSLLKGRLLRNIVFPSVIDAIALDP-AE---HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (451)
Q Consensus       200 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  274 (451)
                      .++++|+.+-..+.-+........+.|.. .|   ..++++ -.+|.+.++|-.....       +....-.-|..+|.+
T Consensus        77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~  149 (558)
T KOG0882|consen   77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKK  149 (558)
T ss_pred             ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEE
Confidence            99999998876665555433333334432 22   134433 4678999999877542       334455569999999


Q ss_pred             EEEec-CCEEEEEcCCCcEEEEeCCC------CceE---------EEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          275 LAYST-GDLLISGSEDGMVRVWDPIT------HNIV---------RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       275 ~~~~~-~~~l~s~~~dg~i~iwd~~~------~~~~---------~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      +.+++ ++.+++....|.|.-|....      .+..         ..+.-..+..+++.|+|+|..+++-+.|..|+++.
T Consensus       150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence            99999 99999999999999998762      1111         12223356789999999999999999999999999


Q ss_pred             cCCCCCCCccccccccccc
Q 012996          339 RHGSQLPPPLDKYVTSADE  357 (451)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~  357 (451)
                      +.++.+.+.++........
T Consensus       230 ~KtGklvqeiDE~~t~~~~  248 (558)
T KOG0882|consen  230 FKTGKLVQEIDEVLTDAQY  248 (558)
T ss_pred             eccchhhhhhhccchhhhh
Confidence            9999888877666544433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.8e-09  Score=93.66  Aligned_cols=253  Identities=14%  Similarity=0.092  Sum_probs=169.0

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--C-cceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcch
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTV  154 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~  154 (451)
                      |.+.|+.+..+ -.+++.+++.||.++.|.-..  + +.+..+..|.+.|.+++.+-++.++.|.+. |..++++|+.+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            55666666554 367899999999999998543  1 345566789999999999999999999777 999999999652


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCc-eeeeee--cccceeEEEECCCC
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-LLRNIV--FPSVIDAIALDPAE  230 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~--~~~~i~~~~~~~~~  230 (451)
                      ..         .....+..-++.+..+. ++. .....-++.-.++.+.++|-.... ....+.  |..+|..+-+.|.+
T Consensus        87 Dm---------inmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   87 DM---------INMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             ch---------hhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence            21         11111222222222211 111 111223344467889999976544 222222  78899999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCC------CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          231 HVFYAGSRDGSIYIAALNAESPS------TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      ..+++....|.|..|.....-..      .....-..+..+........++.|+| +..+.+-+.|..|++++..+++.+
T Consensus       157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            99999999999999998741110      00000111223333456788999999 999999999999999999998876


Q ss_pred             EEee--------------------------------cC-CCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          304 RMFR--------------------------------LA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       304 ~~~~--------------------------------~~-~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +.+.                                -| ...-+.+.|...|++|+.++.=| |++.++.+..
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~  308 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT  308 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence            6553                                11 12456778888999998876433 3444444443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=3.2e-07  Score=84.67  Aligned_cols=214  Identities=13%  Similarity=-0.008  Sum_probs=127.7

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCc-ccCCCCC--CccEEEEECCCCceeeeecCCCCeeEEEE
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL-REQPSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAA   88 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d--~g~i~vw~~~~~~~~~~~~~~~~v~~~~~   88 (451)
                      ...|.+=|.. |...+.+...    .......  |+|+|+. ++..+..  ...|.++|+.+++........+......|
T Consensus       168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~  240 (419)
T PRK04043        168 KSNIVLADYT-LTYQKVIVKG----GLNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDV  240 (419)
T ss_pred             cceEEEECCC-CCceeEEccC----CCeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEE
Confidence            3456665654 3333333221    1333444  9999985 5543332  26799999988877665555566777889


Q ss_pred             CCCCcEEEEe-cc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CC--cEEEeeCcchhhhhhhhc
Q 012996           89 NSHGTYIAGG-GQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQR  162 (451)
Q Consensus        89 ~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~  162 (451)
                      +|||+.++.. +.  +..|+++|+.+++.. .+..+........|+|||+.|+-.+. .+  .|.++|+.++.       
T Consensus       241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-------  312 (419)
T PRK04043        241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-------  312 (419)
T ss_pred             CCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-------
Confidence            9999877654 32  346888898777643 34334433345689999987776553 33  46677774421       


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEEEeeCC---------CcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (451)
                        .. ..+..+.  .  ...|+|++  +.++..+..         ..|.+.|+.++... .+..........|+|+|+.+
T Consensus       313 --~~-rlt~~g~--~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I  382 (419)
T PRK04043        313 --VE-QVVFHGK--N--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSI  382 (419)
T ss_pred             --eE-eCccCCC--c--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEE
Confidence              10 1111111  1  23789988  555544432         36888898877643 33323334468899999988


Q ss_pred             EEEeCCC---cEEEEEccCC
Q 012996          234 YAGSRDG---SIYIAALNAE  250 (451)
Q Consensus       234 ~~~~~dg---~i~i~d~~~~  250 (451)
                      +..+.++   .+.+.++...
T Consensus       383 ~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        383 MFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEEccCCcEEEEEEecCCC
Confidence            7665433   3666666553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.02  E-value=2e-09  Score=89.06  Aligned_cols=207  Identities=16%  Similarity=0.259  Sum_probs=142.4

Q ss_pred             cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc------------CceeEEEEeecCCe
Q 012996          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT------------LRITDIVIGYGGVS  189 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~i~~~~~~~~  189 (451)
                      ...|+++.|...|.+|++|...|+|.+|.-.....      -.......+.+|.            ..|..+.|..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~------ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccc------cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            45789999999999999999999999998654221      0112223344443            34777888877666


Q ss_pred             eEEEEeeCCCcEEEEEcCCCce-------------------e-----------------------eee--ecccceeEEE
Q 012996          190 ATIVSASEDRTCKVWSLLKGRL-------------------L-----------------------RNI--VFPSVIDAIA  225 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~-------------------~-----------------------~~~--~~~~~i~~~~  225 (451)
                      ..++..+.|.+|++|.+.....                   +                       +..  .|+..+.++.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence            7788888999999998854310                   0                       000  1455678889


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-----CcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996          226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-----SKAVTCLAYST--GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~  298 (451)
                      +..+...++++ .|-+|.+|++.-....      ..+..++.|     ..-|++..|+|  ...+.-.++.|.|++-|++
T Consensus       180 ~NsD~et~lSa-DdLrINLWnl~i~D~s------FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         180 FNSDKETLLSA-DDLRINLWNLEIIDGS------FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             ecCchheeeec-cceeeeeccccccCCc------eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            98888777654 5778999998765422      122233333     35688999999  7788888899999999987


Q ss_pred             CCc------eEEE----------eecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          299 THN------IVRM----------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       299 ~~~------~~~~----------~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      ...      .+..          +..-...|..+.|+++|+++++-+. .++++||+...
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            321      1111          1122347899999999999988643 68999998754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.1e-07  Score=89.50  Aligned_cols=207  Identities=16%  Similarity=0.189  Sum_probs=141.7

Q ss_pred             ECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC-eeEEEEccCCcEEEEeeCCCc-----EEEeeCcchhhhhhhh
Q 012996           88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA-VTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECESQ  161 (451)
Q Consensus        88 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~  161 (451)
                      |++.+..++.|+.+|.|.+++ ++-+.++.++++... |..+....+..+|++.+.|+.     ++||+++......+  
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s--  107 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--  107 (933)
T ss_pred             EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC--
Confidence            577788999999999999887 455666888888777 555544445578888877654     89999976432111  


Q ss_pred             cccccce--ec-----ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC---CC--ceeeeeecccceeEEEECCC
Q 012996          162 RASHLYL--HS-----FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KG--RLLRNIVFPSVIDAIALDPA  229 (451)
Q Consensus       162 ~~~~~~~--~~-----~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~---~~--~~~~~~~~~~~i~~~~~~~~  229 (451)
                         ..++  +.     +...+.++.+++++.+-  ..+++|-.+|.|..+.=.   ..  +.........+|+.+++..+
T Consensus       108 ---P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  108 ---PQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             ---cceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence               2222  11     22246678889998886  899999999999998421   11  11122235689999999988


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee-
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-  307 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  307 (451)
                      +..++-...-..|.+|.+....        .....+..|...++|..+++ ...|++++.. -+.+|+.....+-..+. 
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~  253 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEV  253 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecC
Confidence            8773333334578899888543        22445777888999999999 3336665544 59999988766666676 


Q ss_pred             cCCC
Q 012996          308 LAKG  311 (451)
Q Consensus       308 ~~~~  311 (451)
                      +|..
T Consensus       254 g~kk  257 (933)
T KOG2114|consen  254 GEKK  257 (933)
T ss_pred             CCeE
Confidence            5543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.00  E-value=2e-07  Score=77.00  Aligned_cols=233  Identities=14%  Similarity=0.148  Sum_probs=131.9

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH  119 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  119 (451)
                      .+.+|+.||+.-.  ..|.+=..+..-.      .......-.=..++||||+.+||.+...|+|++||+.. ..+..+.
T Consensus         5 ~~~~Gk~lAi~qd--~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~   81 (282)
T PF15492_consen    5 LSSDGKLLAILQD--QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP   81 (282)
T ss_pred             ecCCCcEEEEEec--cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence            4566776666544  4666655443221      11111223457899999999999999999999999864 3333332


Q ss_pred             c-------ccCCeeEEEEccC------CcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee--cccC-CcCceeEEEE
Q 012996          120 A-------HYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH--SFTG-HTLRITDIVI  183 (451)
Q Consensus       120 ~-------~~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~i~~  183 (451)
                      .       -...|..+.|.+.      ...|++-..+|.++-|-+..+..      ......+  .+.. +...|.++.+
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~------q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN------QGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC------CcceeeEEEEecccCCCceeEEEE
Confidence            1       2356777777542      12466777788888777632111      1222222  2333 4778999999


Q ss_pred             eecCCeeEEEEeeCCCc-----------EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q 012996          184 GYGGVSATIVSASEDRT-----------CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP  252 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~-----------i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (451)
                      ++..  ++|+.|+....           +..|.+-++.+...         ...+.+...-......   .+|.+-+.  
T Consensus       156 ~p~h--~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---------~v~~~~~~~~~~~~~~---~~~~~~~~--  219 (282)
T PF15492_consen  156 HPKH--RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK---------QVTSSEDDITASSKRR---GLLRIPSF--  219 (282)
T ss_pred             cCCC--CEEEEeccCCCCCccccccccCceEEEEcCCCCcEE---------EccccCcccccccccc---ceeeccce--
Confidence            9987  66666654322           22222222111110         0001111111111111   12222111  


Q ss_pred             CCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996          253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                             ............|..|..|| +..||+...+|.|.+|++.+-++.+.+..+.
T Consensus       220 -------~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  220 -------KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             -------eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                   11111223467899999999 9999999999999999999988877766543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=1.7e-09  Score=90.67  Aligned_cols=152  Identities=13%  Similarity=0.123  Sum_probs=119.0

Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-----cee
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-----RLL  212 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~  212 (451)
                      ++.+.+-.+.+-|+.++.            ...|. ..+.|.++.|...+  ++++.|+..|.|..+|++.+     .+.
T Consensus       228 fs~G~sqqv~L~nvetg~------------~qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH------------QQSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             ecccccceeEEEEeeccc------------ccccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcce
Confidence            455566678888886631            12233 56778888888766  89999999999999999864     566


Q ss_pred             eeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE--Eec-CCEEEEEcC
Q 012996          213 RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA--YST-GDLLISGSE  288 (451)
Q Consensus       213 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~~l~s~~~  288 (451)
                      ..+.|++.|+++..-. ++.+|++.+.+|+|.+||++..+..      .-+.++.+|...-.-+-  ..+ ...+++++.
T Consensus       293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc------cceeeeecccccccccccccccccceEEEccC
Confidence            7788999999998877 8899999999999999999986431      23677888866544433  345 778899999


Q ss_pred             CCcEEEEeCCCCceEEEeecCC
Q 012996          289 DGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                      |...+||.+.++.++.++....
T Consensus       367 DcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  367 DCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             eeEEEEEecccCceeeccCCCC
Confidence            9999999999999999987543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.99  E-value=9e-08  Score=82.23  Aligned_cols=228  Identities=16%  Similarity=0.117  Sum_probs=136.1

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~   91 (451)
                      +|+|..||..+|+.+.+...... .....+.   ..+++..+++++.+ +.|..||..+++........+++...... .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~---~~~~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPG-IGGPVAT---AVPDGGRVYVASGD-GNLYALDAKTGKVLWRFDLPGPISGAPVV-D   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSS-CSSEEET---EEEETTEEEEEETT-SEEEEEETTTSEEEEEEECSSCGGSGEEE-E
T ss_pred             CCEEEEEECCCCCEEEEEECCCC-CCCccce---EEEeCCEEEEEcCC-CEEEEEECCCCCEEEEeeccccccceeee-c
Confidence            78999999999999988864221 2222221   23356666666555 99999999999887766554443333222 3


Q ss_pred             CcEEEEeccCCCEEEEEcCCCcceeee-cccc---CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccc
Q 012996           92 GTYIAGGGQSGDIYMWEVASGRLLKKW-HAHY---RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY  167 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  167 (451)
                      +..+++++.++.++.+|..+|+.+... ....   ..........++..++.+..++.|..+|+.++.............
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            455666667889999999999998874 3221   111222233337788888889999999997643211111000000


Q ss_pred             eecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 012996          168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL  247 (451)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  247 (451)
                      ...+. ....+.+-....+   ..++.++.++.+..+|+.+++.+.... ...+..+ ..+.+..+++++.++.+..||+
T Consensus       156 ~~~~~-~~~~~~~~~~~~~---~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  156 SSPIS-SFSDINGSPVISD---GRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             S--EE-EETTEEEEEECCT---TEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred             Cccee-eecccccceEEEC---CEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence            00000 0011112122222   366666667754444999998665333 3333331 3467788888889999999999


Q ss_pred             cCCC
Q 012996          248 NAES  251 (451)
Q Consensus       248 ~~~~  251 (451)
                      .+++
T Consensus       230 ~tG~  233 (238)
T PF13360_consen  230 KTGK  233 (238)
T ss_dssp             TTTE
T ss_pred             CCCC
Confidence            9874

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.99  E-value=3e-07  Score=85.17  Aligned_cols=256  Identities=13%  Similarity=0.085  Sum_probs=152.4

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      .++.++ .+|.+..+|..+|+.+.+.....    .+.+..  ...++ .++++..+ |.+.-+|..+++.........+.
T Consensus       122 ~v~v~~-~~g~l~ald~~tG~~~W~~~~~~----~~~ssP--~v~~~-~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        122 KVYIGS-EKGQVYALNAEDGEVAWQTKVAG----EALSRP--VVSDG-LVLVHTSN-GMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             EEEEEc-CCCEEEEEECCCCCCcccccCCC----ceecCC--EEECC-EEEEECCC-CEEEEEEccCCCEeeeecCCCCc
Confidence            345566 78999999999999988775432    122222  22334 34445555 89999999999887665432211


Q ss_pred             eEE--EECC--CCcEEEEeccCCCEEEEEcCCCcceeeeccccC-------CeeEEEEcc--CCcEEEEeeCCCcEEEee
Q 012996           84 KPI--AANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-------AVTCLVFSE--DGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        84 ~~~--~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~s~~~dg~i~vwd  150 (451)
                      ..+  .-+|  .+..++.++.+|.+..+|..+|+.+........       ....+.-+|  .+..++.++.+|.+..+|
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence            100  0122  133566678889999999999987665431110       011111222  245677778899999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-c-cceeEEEECC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVIDAIALDP  228 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~i~~~~~~~  228 (451)
                      ..++.....         ..+.    ....+..  .+  ..++.++.+|.+..+|..+++.+..... . ....+..+  
T Consensus       273 ~~tG~~~W~---------~~~~----~~~~~~~--~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--  333 (394)
T PRK11138        273 LRSGQIVWK---------REYG----SVNDFAV--DG--GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--  333 (394)
T ss_pred             CCCCCEEEe---------ecCC----CccCcEE--EC--CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--
Confidence            976432111         1111    1111222  23  5778888999999999999987665431 1 11111111  


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE-EEEecCCEEEEEcCCCcEEEEeC
Q 012996          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYSTGDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~dg~i~iwd~  297 (451)
                      .+..+++++.+|.++.+|..+++         .+....-....+.+ ..+. +..|+.++.||.|..++.
T Consensus       334 ~~g~l~v~~~~G~l~~ld~~tG~---------~~~~~~~~~~~~~s~P~~~-~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 YNGYLVVGDSEGYLHWINREDGR---------FVAQQKVDSSGFLSEPVVA-DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCC---------EEEEEEcCCCcceeCCEEE-CCEEEEEeCCceEEEEeC
Confidence            36788899999999999998874         23333222222221 1111 678999999999988764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.97  E-value=1.5e-06  Score=74.23  Aligned_cols=231  Identities=18%  Similarity=0.231  Sum_probs=154.6

Q ss_pred             CCeeEEEECC-CCcEEEEeccCCC-EEEEEcCCCcceeeeccccCCe--eEEEEccCCcEEEEeeC-----CCcEEEeeC
Q 012996           81 EPIKPIAANS-HGTYIAGGGQSGD-IYMWEVASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSE-----DGCVRIWSL  151 (451)
Q Consensus        81 ~~v~~~~~~~-~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~-----dg~i~vwd~  151 (451)
                      .....++.+| ....++.+-.-|. ..+||..+++....+....+.-  -.-.|++||++|++.-.     .|.|-|||.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            4456788889 5566677766665 7899999998887765433322  13689999999998643     578999999


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee------------------CCCcEEEEEcCCCceee
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS------------------EDRTCKVWSLLKGRLLR  213 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~------------------~d~~i~iwd~~~~~~~~  213 (451)
                      ..          ....+..+..|.-.-..+.+.+++  ..|+.+.                  .+-.+.+.|..+|+.+.
T Consensus        85 ~~----------~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~  152 (305)
T PF07433_consen   85 AR----------GYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE  152 (305)
T ss_pred             cC----------CcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence            52          345566677776666778888887  4444432                  13356777888898887


Q ss_pred             eee-----cccceeEEEECCCCCEEEEEeCCCc-------EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C
Q 012996          214 NIV-----FPSVIDAIALDPAEHVFYAGSRDGS-------IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G  280 (451)
Q Consensus       214 ~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  280 (451)
                      ...     +...|..+++.++|..++..-..|.       +.+++....-....    .+......-.+.+-+|++++ +
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~----~p~~~~~~l~~Y~gSIa~~~~g  228 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLP----APEEQWRRLNGYIGSIAADRDG  228 (305)
T ss_pred             eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceecc----CChHHHHhhCCceEEEEEeCCC
Confidence            754     3457999999999887777654442       33333332110000    00011223457899999999 7


Q ss_pred             CEEEEEc-CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996          281 DLLISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       281 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                      .++++.+ ..|.+.+||..+++.+......  .+..++-.+++ ++++.+.
T Consensus       229 ~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  229 RLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC
Confidence            7665544 5778999999999999887654  56777877777 5665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1.9e-08  Score=94.26  Aligned_cols=286  Identities=15%  Similarity=0.103  Sum_probs=162.2

Q ss_pred             EeeccCcccCCCCC---CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc
Q 012996           46 FLASSQLREQPSAS---SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY  122 (451)
Q Consensus        46 ~~~~~~~l~~~~~d---~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  122 (451)
                      |+|...++|+++..   .|.|.||- ++++......-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|.
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~  101 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP  101 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC
Confidence            78888887776532   38888885 444433222233457789999999999999999999999987777666667899


Q ss_pred             CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh-----hccccc--ceec---------------ccCCcCce--
Q 012996          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES-----QRASHL--YLHS---------------FTGHTLRI--  178 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~--~~~~---------------~~~~~~~i--  178 (451)
                      .+|..+.||++|..++++..-|.+.+|...........     ......  ....               ..+....+  
T Consensus       102 a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~  181 (1416)
T KOG3617|consen  102 APIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDE  181 (1416)
T ss_pred             CCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcc
Confidence            99999999999999999999999999987521110000     000000  0000               00000000  


Q ss_pred             ----------eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996          179 ----------TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       179 ----------~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (451)
                                .++.-+....+..++.++.+|+|+..|- .|+........+.| .+-|.+...-+.+-..+-++.++-..
T Consensus       182 ~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~  259 (1416)
T KOG3617|consen  182 PFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSEV-QMLFMGYCEAISIIIEFLRDCLIFVL  259 (1416)
T ss_pred             cccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccchH-HHHHhcccceEEEEeeeceeeEEEec
Confidence                      0111111112367778888888888873 44444443333221 12233322222222222222222111


Q ss_pred             CCCCC-------------CC--------CCC-ceee-eeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC-CC---C
Q 012996          249 AESPS-------------TS--------SYG-MHII-GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP-IT---H  300 (451)
Q Consensus       249 ~~~~~-------------~~--------~~~-~~~~-~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~-~~---~  300 (451)
                      .....             ..        ..+ ..+. ..-......++|++++. +..|..|...|++.+|-- .+   |
T Consensus       260 ~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g  339 (1416)
T KOG3617|consen  260 AKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQG  339 (1416)
T ss_pred             CCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccC
Confidence            10000             00        000 0000 00011246799999999 999999999999999953 22   1


Q ss_pred             ce---EEEe---ecCCCCeeEEEEEecCceeeeccCCCCc
Q 012996          301 NI---VRMF---RLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (451)
Q Consensus       301 ~~---~~~~---~~~~~~v~~l~~s~~~~~l~~~s~d~~i  334 (451)
                      .+   ..++   ....+.|+.+.|.|--..++..+....+
T Consensus       340 ~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~  379 (1416)
T KOG3617|consen  340 DPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVV  379 (1416)
T ss_pred             CCCcceEEecCchhhccceEEEEeccccchhhhhhhhhee
Confidence            11   2222   2345689999999977666665544433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.96  E-value=1.8e-08  Score=95.08  Aligned_cols=183  Identities=20%  Similarity=0.308  Sum_probs=141.6

Q ss_pred             CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc
Q 012996           92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF  171 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  171 (451)
                      +..++.|+-...+..+|+++.+..+...-..+.|.-++.  +++++++|...|+|.+-|.           .....++++
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~-----------~s~~~iht~  213 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDP-----------NSFETIHTF  213 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecC-----------CcCceeeee
Confidence            456777777788999999988877776555555666665  4889999999999999999           456788999


Q ss_pred             cCCcCceeEEEEeecCCeeEEEEeeC---------CCcEEEEEcCCCceeeeeecccceeEEEECC-CCCEEEEEeCCCc
Q 012996          172 TGHTLRITDIVIGYGGVSATIVSASE---------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGS  241 (451)
Q Consensus       172 ~~~~~~i~~i~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~  241 (451)
                      ..|++.|.++..  .|  +.|++++.         |..|++||++..+.+..+..+....-+.|.| -...+++++..|.
T Consensus       214 ~aHs~siSDfDv--~G--NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  214 DAHSGSISDFDV--QG--NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             eccccceeeeec--cC--CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccc
Confidence            999999988765  33  68888775         5568999999998888888766667788888 4567888999999


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      ..+.|..+....     ..-+..+......+..+.+++ ++.++.|..+|.|.+|.
T Consensus       290 ~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccCCC-----ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            999994432210     011223333445699999999 99999999999999997

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=1.9e-06  Score=74.20  Aligned_cols=214  Identities=18%  Similarity=0.190  Sum_probs=135.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEe-eccCcccCCCCCCccEEEEECCCCceeeeec---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFL-ASSQLREQPSASSGSILYWSWSKPQVEVKSL---   78 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~---   78 (451)
                      .++++.- ..+.|..||..+++... +....     ...+.  +. +++.++++. .  +.+.++|..++.......   
T Consensus        13 ~l~~~D~-~~~~i~~~~~~~~~~~~-~~~~~-----~~G~~--~~~~~g~l~v~~-~--~~~~~~d~~~g~~~~~~~~~~   80 (246)
T PF08450_consen   13 RLYWVDI-PGGRIYRVDPDTGEVEV-IDLPG-----PNGMA--FDRPDGRLYVAD-S--GGIAVVDPDTGKVTVLADLPD   80 (246)
T ss_dssp             EEEEEET-TTTEEEEEETTTTEEEE-EESSS-----EEEEE--EECTTSEEEEEE-T--TCEEEEETTTTEEEEEEEEET
T ss_pred             EEEEEEc-CCCEEEEEECCCCeEEE-EecCC-----CceEE--EEccCCEEEEEE-c--CceEEEecCCCcEEEEeeccC
Confidence            3455555 67889999987766542 22211     23333  66 565555544 3  456666988876543321   


Q ss_pred             ---CCCCeeEEEECCCCcEEEEeccC--------CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcE
Q 012996           79 ---PAEPIKPIAANSHGTYIAGGGQS--------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCV  146 (451)
Q Consensus        79 ---~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i  146 (451)
                         .....+.+++.|+|++.++....        |.|..++.. ++... +...-...+.|+|+|+++.|+ +-+..+.|
T Consensus        81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i  158 (246)
T PF08450_consen   81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRI  158 (246)
T ss_dssp             TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred             CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeeccccccee
Confidence               34578899999999977765433        457777765 44333 333456678999999998776 55667888


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc-cceeEEE
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP-SVIDAIA  225 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~i~~~~  225 (451)
                      ..+++.......    ........+....+....+++..++  ++.++....+.|.++|.. |+.+..+..+ ..+++++
T Consensus       159 ~~~~~~~~~~~~----~~~~~~~~~~~~~g~pDG~~vD~~G--~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  159 WRFDLDADGGEL----SNRRVFIDFPGGPGYPDGLAVDSDG--NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             EEEEEETTTCCE----EEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             EEEeccccccce----eeeeeEEEcCCCCcCCCcceEcCCC--CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            888885311000    0111222233333457889998877  777777789999999987 9988888866 7899999


Q ss_pred             E-CCCCCEEEEEe
Q 012996          226 L-DPAEHVFYAGS  237 (451)
Q Consensus       226 ~-~~~~~~l~~~~  237 (451)
                      | -++.+.|++.+
T Consensus       232 fgg~~~~~L~vTt  244 (246)
T PF08450_consen  232 FGGPDGKTLYVTT  244 (246)
T ss_dssp             EESTTSSEEEEEE
T ss_pred             EECCCCCEEEEEe
Confidence            9 46767776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.91  E-value=2.8e-06  Score=80.61  Aligned_cols=293  Identities=16%  Similarity=0.175  Sum_probs=161.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCC-C--ceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeeeecC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPP-H--GLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKSLP   79 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~~~~   79 (451)
                      .+..++ .++.|.-.|..+|+.+.++....... .  .+..-.  ....+ ..++.++.+ |.|.-+|.++++...+...
T Consensus        63 ~vy~~~-~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g--~~~~~~~~V~v~~~~-g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          63 DMYFTT-SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG--VAYWDPRKVFFGTFD-GRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             EEEEeC-CCCcEEEEECCCChhhceeCCCCCccccccccccCC--cEEccCCeEEEecCC-CeEEEEECCCCCEeeeecC
Confidence            455666 78999999999999988775433200 0  011101  11122 555566666 9999999999988876543


Q ss_pred             CCCe---eEEEECC--CCcEEEEec---------cCCCEEEEEcCCCcceeeeccccC--------------------Ce
Q 012996           80 AEPI---KPIAANS--HGTYIAGGG---------QSGDIYMWEVASGRLLKKWHAHYR--------------------AV  125 (451)
Q Consensus        80 ~~~v---~~~~~~~--~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------~v  125 (451)
                      ...+   ..+.-+|  .+..+++++         .+|.+..+|..+|+.+..+.....                    .+
T Consensus       139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            3321   0111122  124455553         367899999999998877643211                    01


Q ss_pred             -eEEEEccCCcEEEEeeCCC------------------cEEEeeCcchhhhhhhhcccccceecccCCcCce-eEEEEee
Q 012996          126 -TCLVFSEDGSFLISGSEDG------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGY  185 (451)
Q Consensus       126 -~~~~~~~~~~~l~s~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~  185 (451)
                       ....+.+.+..++.++.++                  .|.-+|..++........... ....+.....++ ..+. .-
T Consensus       219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~-~~~~~~~~s~p~~~~~~-~~  296 (488)
T cd00216         219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH-DLWDYDGPNQPSLADIK-PK  296 (488)
T ss_pred             cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC-CCcccccCCCCeEEecc-cc
Confidence             1234444456677776665                  688888866433221110000 000001111111 1111 01


Q ss_pred             cCC-eeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE------------------eCCCcEEEEE
Q 012996          186 GGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG------------------SRDGSIYIAA  246 (451)
Q Consensus       186 ~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d  246 (451)
                      ++. ...++.++.+|.+...|..+|+.+......  ...++.+|  ..++++                  ..+|.+.-.|
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence            121 136788889999999999999998876532  11233444  334332                  2357788888


Q ss_pred             ccCCCCCCCCCCceeeeeeccCCcce--eEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996          247 LNAESPSTSSYGMHIIGSLSDHSKAV--TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  308 (451)
                      ..+++........... ....-..+.  ..+... +..++.++.||.|+.+|..+|+.+.+++.
T Consensus       373 ~~tG~~~W~~~~~~~~-~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         373 PKTGKVVWEKREGTIR-DSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCCCcEeeEeeCCccc-cccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            8877533211100000 000000111  112222 68899999999999999999999998875

The alignment model contains an 8-bladed beta-propeller.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=1.3e-09  Score=102.25  Aligned_cols=212  Identities=16%  Similarity=0.186  Sum_probs=151.7

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFE  156 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~  156 (451)
                      +....+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.+.-+.||..+++.+.-.  -..+|++..   
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--- 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--- 1176 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc---
Confidence            467899999999999999999999999999999999999999999999999999998887665543  467899854   


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----cccceeEEEECCCCC
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEH  231 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~  231 (451)
                             ...+.+++.+    -.++.|+...  ..-+.|+......+||+.++..+.++-     ....-++..|+|+..
T Consensus      1177 -------~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1177 -------TGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             -------ccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence                   2233444443    2356676654  344455555678999999998877642     223346788999888


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                      +++-   ||  .+||.+...         .+..+......+ .=.|+| |.-++.-+     .|||+++.++++....- 
T Consensus      1244 LIln---dG--vLWDvR~~~---------aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L- 1302 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPE---------AIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL- 1302 (1516)
T ss_pred             eEee---Cc--eeeeeccHH---------HHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCccc-
Confidence            7763   44  479998752         233333222111 225788 77777654     38999999988877643 


Q ss_pred             CCeeEEEEEecCceeeec
Q 012996          311 GPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       311 ~~v~~l~~s~~~~~l~~~  328 (451)
                       .-..+.|+..|..+...
T Consensus      1303 -dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             -cceEEEeccCccchhhh
Confidence             23677888888766544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.90  E-value=2.5e-06  Score=69.43  Aligned_cols=304  Identities=14%  Similarity=0.069  Sum_probs=165.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .+++.|+ -.+.+.--|..+|+...+-- ..   ..+.+-+  .. -|.+++.|+.. |.+++.+.+++.........+.
T Consensus        24 T~v~igS-Hs~~~~avd~~sG~~~We~i-lg---~RiE~sa--~v-vgdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   24 TLVVIGS-HSGIVIAVDPQSGNLIWEAI-LG---VRIECSA--IV-VGDFVVLGCYS-GGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             eEEEEec-CCceEEEecCCCCcEEeehh-hC---ceeeeee--EE-ECCEEEEEEcc-CcEEEEEecchhheeeeeehhh
Confidence            3566677 77888888888888775432 11   2233332  22 46678888888 9999999999977766655555


Q ss_pred             eeEEE-ECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           83 IKPIA-ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        83 v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      |.+-+ ..+++..+..|+.|++.+..|.++..++...+...+...+-+..|-...|+.+...|.+.--...+.       
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~-------  167 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY-------  167 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC-------
Confidence            54433 4678999999999999999999999888887655554445556663334555555566555444321       


Q ss_pred             cccccceecccC--CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeE-EEEC-CCCCEEEEEe
Q 012996          162 RASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDA-IALD-PAEHVFYAGS  237 (451)
Q Consensus       162 ~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~-~~~~-~~~~~l~~~~  237 (451)
                           ....+-.  ..++|.+--..-.   ..+..++-||.+.-+| ..|+.+..+...++|.. -+.+ |..+.+..+.
T Consensus       168 -----~~~~~w~~~~~~PiF~splcv~---~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~  238 (354)
T KOG4649|consen  168 -----SSTEFWAATRFGPIFASPLCVG---SSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLEN  238 (354)
T ss_pred             -----CcceehhhhcCCccccCceecc---ceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEec
Confidence                 0011111  1122221100011   3444555666666666 45555555544444321 1111 3434444444


Q ss_pred             CCCcE--------EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          238 RDGSI--------YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       238 ~dg~i--------~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      .+..+        .+|..+.+.....-.  .+.-.+.-|...+.     ...+|..++.||.+.|.-+.  +.+.++..|
T Consensus       239 ~~Cf~~~~p~~ghL~w~~~~g~t~~vy~--~p~l~F~~h~~~~S-----~~~ll~~~s~dgkv~il~~~--~sl~~~~s~  309 (354)
T KOG4649|consen  239 ENCFCAPLPIAGHLLWATQSGTTLHVYL--SPKLRFDLHSPGIS-----YPKLLRRSSGDGKVMILMTS--KSLAEISSN  309 (354)
T ss_pred             CCeEEEeccccceEEEEecCCcEEEEEe--CcccceeccCCCCc-----chhhhhhhcCCCcEEEEEec--ccccccccC
Confidence            43332        234433321000000  00001111211111     13577788899998887433  224445555


Q ss_pred             CCCeeEEE--------EE-e---cCceeeeccCCCCccccccCC
Q 012996          310 KGPVNNIL--------VV-R---RPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       310 ~~~v~~l~--------~s-~---~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .+.+..+.        |+ |   +| .|..|+.|.-++-||+.+
T Consensus       310 ~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~  352 (354)
T KOG4649|consen  310 GGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDT  352 (354)
T ss_pred             CCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEeccc
Confidence            44433333        22 2   34 577888999999998765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2e-07  Score=80.20  Aligned_cols=243  Identities=12%  Similarity=0.125  Sum_probs=142.0

Q ss_pred             eeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCc
Q 012996           75 VKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  152 (451)
                      +...+...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-| .+++..|..+|.|.|||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            3344677899999999777 7888899999999999999999998888 88999999875 4667788889999999998


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEE------EeecCCeeEEEEeeCCCcEEEEEcCC----Cceeeeeeccccee
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIV------IGYGGVSATIVSASEDRTCKVWSLLK----GRLLRNIVFPSVID  222 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~------~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~i~  222 (451)
                      ...........        .....+|..++      ..+.+  .+++....+  +..|++.-    ..++..+..++...
T Consensus       267 ~~~~~~~e~~a--------~~t~~pv~~i~~~~~n~~f~~g--glLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ci  334 (463)
T KOG1645|consen  267 QPEGPLMELVA--------NVTINPVHKIAPVQPNKIFTSG--GLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICI  334 (463)
T ss_pred             CCCchHhhhhh--------hhccCcceeecccCcccccccc--ceEEeeehh--hhhhhhhccccCCCcccccCCCccee
Confidence            74322111100        00112222222      22222  344444433  45665532    22333444567777


Q ss_pred             EEEECCCCCEEEEEeCCC----cEEE----EEccCCCCCCCCCCceeeeeeccC-Ccce-----eEEEEe-c-CCEEE-E
Q 012996          223 AIALDPAEHVFYAGSRDG----SIYI----AALNAESPSTSSYGMHIIGSLSDH-SKAV-----TCLAYS-T-GDLLI-S  285 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg----~i~i----~d~~~~~~~~~~~~~~~~~~~~~~-~~~v-----~~~~~~-~-~~~l~-s  285 (451)
                      ++.+++..+.++......    .++.    -|...+.        .....-.++ ...-     +...+. + .++++ +
T Consensus       335 smqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--------pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~  406 (463)
T KOG1645|consen  335 SMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--------PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV  406 (463)
T ss_pred             eeeecCccceEEEEecCCCCCccceeeeeeeccccCc--------eeeeecccccCCcccccccccceeccccccEEEEe
Confidence            788877555555443321    1111    0111111        111111111 0000     111122 2 33433 4


Q ss_pred             EcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe-cC-ceeeeccCCCCccccccC
Q 012996          286 GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RP-LYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~-~~l~~~s~d~~i~iw~~~  340 (451)
                      |+.-+.+.+||+.+++.++++.. +.+|.+++... ++ .||++- .|..+.|++.+
T Consensus       407 gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  407 GDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             cCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence            45567799999999999999876 47888888765 33 355444 45666666543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=4.4e-08  Score=91.44  Aligned_cols=184  Identities=18%  Similarity=0.253  Sum_probs=134.9

Q ss_pred             cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ...+.|++++  +++|+-|+.+|.|++++...           . + .....|+..      ...  |.++++|+.||+|
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-----------~-~-~~~~~~s~~------~~~--Gey~asCS~DGkv   95 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-----------N-P-KTNFDHSSS------ILE--GEYVASCSDDGKV   95 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-----------c-c-ccccccccc------ccC--CceEEEecCCCcE
Confidence            3456777777  78999999999999999732           1 1 223334433      233  4899999999999


Q ss_pred             EEEEcCCCceeeeeecccceeEEEECCC-----CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE
Q 012996          202 KVWSLLKGRLLRNIVFPSVIDAIALDPA-----EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (451)
Q Consensus       202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  276 (451)
                      .|..+-+.+....+....++.+++++|+     .+.+++|+.-| +.++.-+-...       .....+....++|.++.
T Consensus        96 ~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~  167 (846)
T KOG2066|consen   96 VIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIK  167 (846)
T ss_pred             EEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEE
Confidence            9999999999999999999999999997     57899999988 77765433211       11114556678999999


Q ss_pred             EecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC------eeEEEEEecCceeeeccCCCCccccccC
Q 012996          277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP------VNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       277 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |. |+++|-++.+| |+|||+.+++.+..++.....      -..+.|.++.+.++ | +.-+|+|..++
T Consensus       168 W~-g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  168 WR-GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK  233 (846)
T ss_pred             ec-CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence            98 89999998888 899999999988887754433      34577777654443 3 33445555554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=1.1e-07  Score=90.11  Aligned_cols=179  Identities=11%  Similarity=0.104  Sum_probs=127.4

Q ss_pred             cCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE
Q 012996           50 SQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL  128 (451)
Q Consensus        50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  128 (451)
                      +..++.||.. ..+..+|+.+.+...... ....|+-++.  +++++.+|...|+|.+-|.++.+.+.++.+|.+.|.++
T Consensus       147 ~~~~i~Gg~Q-~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQ-EKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             Ccceeecchh-hheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            4445555555 567777877766544332 2334666555  58999999999999999999999999999999999887


Q ss_pred             EEccCCcEEEEeeC---------CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996          129 VFSEDGSFLISGSE---------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR  199 (451)
Q Consensus       129 ~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~  199 (451)
                      ...  |+.|+++|.         |..|+|||++....           +..+.-+.++ .-+.|.|.-. ..+++++..|
T Consensus       224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----------l~PI~~~~~P-~flrf~Psl~-t~~~V~S~sG  288 (1118)
T KOG1275|consen  224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----------LSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSG  288 (1118)
T ss_pred             ecc--CCeEEEeecccccccccccchhhhhhhhhhhc-----------cCCcccccCc-hhhhhccccc-ceEEEEeccc
Confidence            765  889999876         45589999976322           1112222222 2345666543 6788888999


Q ss_pred             cEEEEEc---CCCc-eeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996          200 TCKVWSL---LKGR-LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA  246 (451)
Q Consensus       200 ~i~iwd~---~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  246 (451)
                      ...+-|.   .+.. .+..+. ..+.+..++++++++.++.|..+|.|.+|.
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9999993   3321 122222 345599999999999999999999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.82  E-value=1.2e-08  Score=59.44  Aligned_cols=39  Identities=36%  Similarity=0.888  Sum_probs=36.6

Q ss_pred             CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      ++++.++.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=6.2e-06  Score=70.49  Aligned_cols=229  Identities=15%  Similarity=0.135  Sum_probs=142.8

Q ss_pred             EEeecCCCCCC-eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC----CccEEEEECCCCceeee--
Q 012996            4 LIASSSVADTG-IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVK--   76 (451)
Q Consensus         4 ~l~s~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~g~i~vw~~~~~~~~~~--   76 (451)
                      .+|.+. ..|+ ..+||..+|+....+....+   .-..=-.-|+++|++|.++-.|    .|.|-|||....-....  
T Consensus        19 avafaR-RPG~~~~v~D~~~g~~~~~~~a~~g---RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~   94 (305)
T PF07433_consen   19 AVAFAR-RPGTFALVFDCRTGQLLQRLWAPPG---RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF   94 (305)
T ss_pred             EEEEEe-CCCcEEEEEEcCCCceeeEEcCCCC---CEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe
Confidence            455666 5554 78999999999887754322   1111112299999999987443    38999999984333322  


Q ss_pred             ecCCCCeeEEEECCCCcEEEEec------------------cCCCEEEEEcCCCcceee--e--ccccCCeeEEEEccCC
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGG------------------QSGDIYMWEVASGRLLKK--W--HAHYRAVTCLVFSEDG  134 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~  134 (451)
                      ..+.-....+.+.|||..|+++.                  .+-++...|..+|+++..  +  .-|.-.|..+++.++|
T Consensus        95 ~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G  174 (305)
T PF07433_consen   95 PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG  174 (305)
T ss_pred             cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC
Confidence            22344567788999998887762                  123466677788888766  4  3377889999999998


Q ss_pred             cEEEEeeCCCc-------EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996          135 SFLISGSEDGC-------VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (451)
Q Consensus       135 ~~l~s~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~  207 (451)
                      ..++..-..|.       |-+++.......      -.........-...+-+|+++.++. ...+|+-..+.+.+||..
T Consensus       175 ~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~------~~~p~~~~~~l~~Y~gSIa~~~~g~-~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  175 TVAFAMQYQGDPGDAPPLVALHRRGGALRL------LPAPEEQWRRLNGYIGSIAADRDGR-LIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             cEEEEEecCCCCCccCCeEEEEcCCCccee------ccCChHHHHhhCCceEEEEEeCCCC-EEEEECCCCCEEEEEECC
Confidence            76665544332       334433210000      0000011223456788999998873 344666678899999999


Q ss_pred             CCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996          208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAA  246 (451)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  246 (451)
                      +++.+....... +..++..+++  |++.+..|.+...+
T Consensus       248 tg~~~~~~~l~D-~cGva~~~~~--f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  248 TGRLLGSVPLPD-ACGVAPTDDG--FLVSSGQGQLIRLS  283 (305)
T ss_pred             CCCEeeccccCc-eeeeeecCCc--eEEeCCCccEEEcc
Confidence            999888776433 4455555555  44444455544433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=6.7e-09  Score=60.49  Aligned_cols=39  Identities=23%  Similarity=0.182  Sum_probs=37.0

Q ss_pred             CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ++++.++.+|.++|++|+|+|++.+|++++.|+.+++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.73  E-value=9.4e-06  Score=73.85  Aligned_cols=257  Identities=13%  Similarity=0.124  Sum_probs=139.7

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-cc-------c---------cC
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HA-------H---------YR  123 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-------~---------~~  123 (451)
                      +.+.+||+.++...........+....|||+|+.+|... ++.|++++..++...+.- .+       -         -+
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~  101 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD  101 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence            789999999987665544467899999999999998865 578999998776433221 11       0         12


Q ss_pred             CeeEEEEccCCcEEEEeeCC-CcEEEeeCcchhhhhh-------------hh-------------ccccccee---cccC
Q 012996          124 AVTCLVFSEDGSFLISGSED-GCVRIWSLLTVFEECE-------------SQ-------------RASHLYLH---SFTG  173 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~-------------~~-------------~~~~~~~~---~~~~  173 (451)
                      .-..+-||||+++|+....| ..|..+.+........             ..             ......+.   .+..
T Consensus       102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~  181 (353)
T PF00930_consen  102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP  181 (353)
T ss_dssp             SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred             cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence            23578899999998876543 3344443321111000             00             00000001   1122


Q ss_pred             CcCceeEEEEeecCCeeEEE--EeeCCC---cEEEEEcCCCceeeeee--cccc---eeEEEEC-C-CCCEEEEEeCCCc
Q 012996          174 HTLRITDIVIGYGGVSATIV--SASEDR---TCKVWSLLKGRLLRNIV--FPSV---IDAIALD-P-AEHVFYAGSRDGS  241 (451)
Q Consensus       174 ~~~~i~~i~~~~~~~~~~l~--s~~~d~---~i~iwd~~~~~~~~~~~--~~~~---i~~~~~~-~-~~~~l~~~~~dg~  241 (451)
                      ....+..+.|.+++  ..++  ..+.+.   .+.++|..++.......  .+..   .....+. + .+.++.....+|.
T Consensus       182 ~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  182 QDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             SSEEEEEEEEEETT--EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CccCcccceecCCC--cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            34456778888887  4233  333333   46677887765433332  2222   2244554 5 4455666667775


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CC-EEEEEcCCC----cEEEEeCCCCceEEEeecCCCCee
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GD-LLISGSEDG----MVRVWDPITHNIVRMFRLAKGPVN  314 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~-~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~  314 (451)
                      -++|-+....        .....+....-.|.. +.+++ ++ +.+++..++    .|..-++..+..+..+....+.-.
T Consensus       260 ~hly~~~~~~--------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~  331 (353)
T PF00930_consen  260 RHLYLYDLDG--------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHY  331 (353)
T ss_dssp             EEEEEEETTS--------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTE
T ss_pred             cEEEEEcccc--------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCce
Confidence            5544443332        223345555566755 66777 44 445565433    455556663455566665444346


Q ss_pred             EEEEEecCceeeec
Q 012996          315 NILVVRRPLYLNLG  328 (451)
Q Consensus       315 ~l~~s~~~~~l~~~  328 (451)
                      .+.|||++++++..
T Consensus       332 ~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  332 SASFSPDGKYYVDT  345 (353)
T ss_dssp             EEEE-TTSSEEEEE
T ss_pred             EEEECCCCCEEEEE
Confidence            99999999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.73  E-value=2.7e-06  Score=83.56  Aligned_cols=233  Identities=12%  Similarity=0.102  Sum_probs=145.8

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc----CCC
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----ASG  112 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~  112 (451)
                      ..|.++.  |..+...++.+... |.|.+-|..+........-...|.+++||||+..++..+..+++.+-.-    -..
T Consensus        69 ~~i~s~~--fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQ--FLADTNSICVITAL-GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEE--EecccceEEEEecC-CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            4566666  88888888888887 8899989888888777777899999999999999998888777765432    000


Q ss_pred             -------------------cceeeeccc---------------------cCCeeEEEEccCCcEEEEe-----eCCCcEE
Q 012996          113 -------------------RLLKKWHAH---------------------YRAVTCLVFSEDGSFLISG-----SEDGCVR  147 (451)
Q Consensus       113 -------------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~s~-----~~dg~i~  147 (451)
                                         +....|.+.                     .+.=+.|.|--||.++++.     .....|+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence                               111112211                     0112358999999999873     2237899


Q ss_pred             EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCceeee----eeccc-
Q 012996          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRN----IVFPS-  219 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~----~~~~~-  219 (451)
                      |||-+.            ..-..-....+.-.++.|-|.|  ..+++-.   .|+.|.+|.- +|-....    +..+. 
T Consensus       226 V~drEg------------~Lns~se~~~~l~~~LsWkPsg--s~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~  290 (1265)
T KOG1920|consen  226 VYDREG------------ALNSTSEPVEGLQHSLSWKPSG--SLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK  290 (1265)
T ss_pred             Eecccc------------hhhcccCcccccccceeecCCC--CeEeeeeecCCCCcEEEEec-CCccccccccCCccccc
Confidence            999741            1111111122233467888876  6777643   4567888884 3433332    33333 


Q ss_pred             ceeEEEECCCCCEEEE---EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEE
Q 012996          220 VIDAIALDPAEHVFYA---GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRV  294 (451)
Q Consensus       220 ~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~i  294 (451)
                      .+..++|+.++..|++   ......|++|-+.+-.       |-....+.-.....  +.|+|  ...|..-..+|...+
T Consensus       291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-------WYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v  361 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-------WYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV  361 (1265)
T ss_pred             chheeeecCCCCceeeeecccccceEEEEEecCeE-------EEEEEEEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence            3899999999999998   4445569999887642       22222222222222  66777  334444445555554


Q ss_pred             Ee
Q 012996          295 WD  296 (451)
Q Consensus       295 wd  296 (451)
                      +|
T Consensus       362 ~~  363 (1265)
T KOG1920|consen  362 RD  363 (1265)
T ss_pred             EE
Confidence            44

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.72  E-value=2.1e-05  Score=73.76  Aligned_cols=209  Identities=11%  Similarity=0.037  Sum_probs=126.4

Q ss_pred             CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC----cEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996          102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (451)
Q Consensus       102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (451)
                      +.+.+.|..+.+...++... +....+.++++|+++++.+.+.    ++...+..+           ...+..+....  
T Consensus       215 ~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-----------~d~~vvfni~~--  280 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-----------RDWVVVFNIAR--  280 (635)
T ss_pred             EEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc-----------CceEEEEchHH--
Confidence            45667777766665555432 2446788999999988876432    233332211           00111111000  


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-----CceeeeeecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCC
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLK-----GRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAES  251 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~  251 (451)
                      +.  ++.+++  ++...  .++.|.+.|.++     ...+..+..+.....+.++|+|+++++++. ++.+.++|+....
T Consensus       281 ie--a~vkdG--K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        281 IE--EAVKAG--KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             HH--HhhhCC--CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            00  222344  44443  367899999998     467777778889999999999999887654 8899999998754


Q ss_pred             CCCC---CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----------CceEEEeecCCCCeeEEE
Q 012996          252 PSTS---SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMFRLAKGPVNNIL  317 (451)
Q Consensus       252 ~~~~---~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~l~  317 (451)
                      ....   ........+..- .......+|.+ |....|-.-|..|..||+..          ...+..+..|-.+-...+
T Consensus       355 ~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~  433 (635)
T PRK02888        355 DLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHA  433 (635)
T ss_pred             hhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeee
Confidence            2110   000111222222 23344567888 88888888999999999876          345555655544322222


Q ss_pred             -----EEecCceeeeccCC
Q 012996          318 -----VVRRPLYLNLGSFS  331 (451)
Q Consensus       318 -----~s~~~~~l~~~s~d  331 (451)
                           -.|||++|++...-
T Consensus       434 ~~g~t~~~dgk~l~~~nk~  452 (635)
T PRK02888        434 SMGETKEADGKWLVSLNKF  452 (635)
T ss_pred             cCCCcCCCCCCEEEEcccc
Confidence                 36899999987543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.71  E-value=2.2e-08  Score=91.12  Aligned_cols=263  Identities=16%  Similarity=0.216  Sum_probs=154.9

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeeecCCCCeeEEEECC-CCcEEEEec----cCCCEEEEE
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANS-HGTYIAGGG----QSGDIYMWE  108 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iwd  108 (451)
                      ..+.|++..+..+...+++|..+ |.|.+-.+....   ......+..++++++|++ |.+.||+|-    .|..+.|||
T Consensus        57 qy~kcva~~y~~d~cIlavG~at-G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSAT-GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCchhhhhhcccc-CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34556663344454566677776 999999876443   234455678999999998 667788873    356799999


Q ss_pred             cCCC--ccee--eecc-ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          109 VASG--RLLK--KWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       109 ~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                      +.++  .+..  .+.+ ......+++|..+.+++++|.....+.++|++...            .....-.+..+.++.+
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~------------~~~~svnTk~vqG~tV  203 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL------------DSVSSVNTKYVQGITV  203 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh------------hhhhhhhhhhccccee
Confidence            9877  2211  1222 33456688999888999999999999999996411            1111123345566777


Q ss_pred             ee-cCCeeEEEEeeCCCcEEEEE-cCCC-ceeeeee-----cccceeEEEECCCC-CEEEEE-eCCCcEEEEEccCCCCC
Q 012996          184 GY-GGVSATIVSASEDRTCKVWS-LLKG-RLLRNIV-----FPSVIDAIALDPAE-HVFYAG-SRDGSIYIAALNAESPS  253 (451)
Q Consensus       184 ~~-~~~~~~l~s~~~d~~i~iwd-~~~~-~~~~~~~-----~~~~i~~~~~~~~~-~~l~~~-~~dg~i~i~d~~~~~~~  253 (451)
                      .| .+  +++++.. ||.|.+|| .++- .++..+.     .+..+..++|.|.. ..+++. -..++|++||+......
T Consensus       204 dp~~~--nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~  280 (783)
T KOG1008|consen  204 DPFSP--NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE  280 (783)
T ss_pred             cCCCC--Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence            77 44  5666655 99999999 4332 2222222     23458999999943 334444 45678999998653221


Q ss_pred             CCCCCceee--e---eeccC--CcceeEEEEec-C--CEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996          254 TSSYGMHII--G---SLSDH--SKAVTCLAYST-G--DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (451)
Q Consensus       254 ~~~~~~~~~--~---~~~~~--~~~v~~~~~~~-~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (451)
                      ........+  .   .++..  -..|.+..|++ .  ...+++-..-++.-+++..    ..+..|..|.+.+-|+
T Consensus       281 ~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s  352 (783)
T KOG1008|consen  281 GSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFS  352 (783)
T ss_pred             ccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhh
Confidence            111110111  0   12211  25677777776 2  3344444444444444322    1223333455665555

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.67  E-value=3.7e-05  Score=62.82  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=79.0

Q ss_pred             eccCc-ccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCee
Q 012996           48 ASSQL-REQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT  126 (451)
Q Consensus        48 ~~~~~-l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  126 (451)
                      ++.+. ++.++.. +.+.--|..++..........++.+-+.- -|++++.|+..|.+++.+.++|+....+..-..-=.
T Consensus        20 ~dskT~v~igSHs-~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   20 NDSKTLVVIGSHS-GIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             cCCceEEEEecCC-ceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence            33444 4444444 88988999999988887777777665554 578899999999999999999988877754332222


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996          127 CLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .....+++..+..|+.|++....|.++
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccc
Confidence            344567899999999999999999955

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.66  E-value=7.1e-06  Score=80.74  Aligned_cols=210  Identities=15%  Similarity=0.141  Sum_probs=131.4

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc----chhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL----TVFE  156 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~----~~~~  156 (451)
                      +.|.++.|..+++-++.+...|.|.+-|..+.... ....-...|.+++|+||+..++..+..+++.+.+-.    ....
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            58999999999999999999999999987765432 223346789999999999999988888887765431    0000


Q ss_pred             hhhhhcccccc--------eecccC------------C---------cCceeEEEEeecCCeeEEEEe-----eCCCcEE
Q 012996          157 ECESQRASHLY--------LHSFTG------------H---------TLRITDIVIGYGGVSATIVSA-----SEDRTCK  202 (451)
Q Consensus       157 ~~~~~~~~~~~--------~~~~~~------------~---------~~~i~~i~~~~~~~~~~l~s~-----~~d~~i~  202 (451)
                      ...........        ...+.+            +         ...=+++.|-.+|  .++++.     ...+.|+
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg--~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG--EYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC--cEEEEEEEeccCCceeEE
Confidence            00000000000        000110            0         0111235665555  788873     2337899


Q ss_pred             EEEcCCCceeeee-ecccceeEEEECCCCCEEEEE---eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996          203 VWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       203 iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                      +||-. |..-..- ...+.-.+++|-|.|..+++-   ++|+.|.+|.-+.....      .....+......+..++|+
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg------~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG------EFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc------ccccCCcccccchheeeec
Confidence            99976 4332221 134456789999999998875   35567999887654311      1111222233458999999


Q ss_pred             c-CCEEEE---EcCCCcEEEEeCCCC
Q 012996          279 T-GDLLIS---GSEDGMVRVWDPITH  300 (451)
Q Consensus       279 ~-~~~l~s---~~~dg~i~iwd~~~~  300 (451)
                      . +..|++   ......|++|-+.+.
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEecCe
Confidence            9 888887   455556999987764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=3.4e-06  Score=79.26  Aligned_cols=175  Identities=14%  Similarity=0.156  Sum_probs=123.9

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL  128 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  128 (451)
                      .++.++.|..+ |.|++++..... .....|...      .-+|.++++|+.||.|.|-.+.+.+...++. ...++.++
T Consensus        48 ~~~~~~~GtH~-g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi  118 (846)
T KOG2066|consen   48 HDKFFALGTHR-GAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI  118 (846)
T ss_pred             hcceeeecccc-ceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence            46778888887 999999977554 222223222      5679999999999999999998888777664 45789999


Q ss_pred             EEccC-----CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996          129 VFSED-----GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (451)
Q Consensus       129 ~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i  203 (451)
                      +++|+     .+.+++||.-| +.++.-.=         -.......+..-.++|.++.|..    ++++-++.+| |++
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~w---------lgnk~~v~l~~~eG~I~~i~W~g----~lIAWand~G-v~v  183 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNW---------LGNKDSVVLSEGEGPIHSIKWRG----NLIAWANDDG-VKV  183 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhh---------hcCccceeeecCccceEEEEecC----cEEEEecCCC-cEE
Confidence            99997     56799999988 77765321         11111113455678999998843    6888887777 999


Q ss_pred             EEcCCCceeeeeeccc-------ceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          204 WSLLKGRLLRNIVFPS-------VIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       204 wd~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      ||..+++.+..+..+.       -...+.|.++.+ |+. |...+|.+..++.
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK  234 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence            9999998888776332       234566765544 444 4455788888873

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=4.2e-08  Score=92.53  Aligned_cols=201  Identities=16%  Similarity=0.195  Sum_probs=137.7

Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      +...++..|....+|++|+.+.++|+.|+..|.|++|++.+           .........|..+|+.+.-+.++. ..|
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-----------G~~e~s~ncH~SavT~vePs~dgs-~~L 1159 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-----------GSMEESVNCHQSAVTLVEPSVDGS-TQL 1159 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-----------ccccccccccccccccccccCCcc-eee
Confidence            34556778889999999999999999999999999999955           445566788999999998887773 333


Q ss_pred             EEeeCCC-cEEEEEcCC-CceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          193 VSASEDR-TCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       193 ~s~~~d~-~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      .+++... -..+|++.+ +.+.+++.   .-.++.|+..-..-+.|+......+||+.+..+...-     +....+...
T Consensus      1160 tsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty-----lt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY-----LTDTVTSSY 1231 (1516)
T ss_pred             eeccccCchHHHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh-----cCcchhhhh
Confidence            3333333 577999864 33444443   3456778776666667777778999999987532210     111112223


Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      .-++..|+| ..+++   .||.  +||++..+.++.|...... -.-.|+|.|..++.-+.     |||+++-.+
T Consensus      1232 ~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred             hccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHH
Confidence            337788999 55554   4664  6999988888877654322 23368999988887653     677665444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.54  E-value=3.2e-08  Score=90.05  Aligned_cols=202  Identities=20%  Similarity=0.268  Sum_probs=132.3

Q ss_pred             CCCeeEEEECCC--CcEEEEeccCCCEEEEEcCCCcc--eeeeccccCCeeEEEEcc-CCcEEEEeeC----CCcEEEee
Q 012996           80 AEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRL--LKKWHAHYRAVTCLVFSE-DGSFLISGSE----DGCVRIWS  150 (451)
Q Consensus        80 ~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~----dg~i~vwd  150 (451)
                      ...+.|+++.-+  ...+++|..+|.|.+-.++...-  .....+|...+++++|++ |.+.|+.|-.    |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            346777776543  35789999999999988765432  234467889999999998 6677776632    56799999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC-C
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-A  229 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~  229 (451)
                      +.+.....   .....+ .  .+......+++|..+.  +++.+|.....+.++|++.............+..+.++| .
T Consensus       136 i~s~ltvP---ke~~~f-s--~~~l~gqns~cwlrd~--klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  136 INSLLTVP---KESPLF-S--SSTLDGQNSVCWLRDT--KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFS  207 (783)
T ss_pred             cccccCCC---cccccc-c--cccccCccccccccCc--chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCC
Confidence            97643210   001111 1  1133344577887665  788999999999999998432222112234577788899 7


Q ss_pred             CCEEEEEeCCCcEEEEEc-cCCCCCCCCCCceeeeeeccCC----cceeEEEEec--CCEEEEEcC-CCcEEEEeCC
Q 012996          230 EHVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGSLSDHS----KAVTCLAYST--GDLLISGSE-DGMVRVWDPI  298 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~--~~~l~s~~~-dg~i~iwd~~  298 (451)
                      ++++++-. ||.|.+||. +.-+        .++..+....    ..+..++|+|  ...+++... .++|+.+|+.
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCceeccc-cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            77776655 999999994 3322        2222222222    2489999999  566666665 4679999874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.54  E-value=0.00035  Score=64.63  Aligned_cols=196  Identities=18%  Similarity=0.213  Sum_probs=104.4

Q ss_pred             CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      .|.||+ .+|+++..+.-..+.|.++.|+.+. .|++...||.+++||+.... ...    -...+....-....+....
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fs----l~~~i~~~~v~e~~i~~~~  134 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFS----LGEEIEEEKVLECRIFAIW  134 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eec----hhhhccccCcccccccccc
Confidence            488998 4677777664444899999999865 46677789999999984311 000    0000111111111122222


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-ccccee---------E-EEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVID---------A-IALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~---------~-~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      +..+|  -.++  ..++.+.+..--... ..+.+. .+....         . ..++.+....+....++.+++.+-...
T Consensus       135 ~~~~G--ivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~  210 (410)
T PF04841_consen  135 FYKNG--IVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF  210 (410)
T ss_pred             cCCCC--EEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence            22232  2222  234444433221111 111111 111100         0 223444444444455555554443221


Q ss_pred             CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEEecC
Q 012996          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRP  322 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~  322 (451)
                      .            .+ ...+++..|+.|| ++++|.-..+|.+.+.+..-.+.+.++... ..+...+.|.-+.
T Consensus       211 ~------------~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  211 K------------QI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             c------------cc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            1            11 1246899999999 999999999999999987767777666654 3455677776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.53  E-value=7.3e-06  Score=76.73  Aligned_cols=189  Identities=7%  Similarity=0.037  Sum_probs=117.8

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc-------------------------
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-------------------------  100 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------------------  100 (451)
                      ++|+|+.+...+...+.+.+.|.++.+......-......++++|+|+++++.+.                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            5567877655555558889999888777665554556678888999888877652                         


Q ss_pred             ---------------CCCEEEEEcCC----C-cceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhh
Q 012996          101 ---------------SGDIYMWEVAS----G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECE  159 (451)
Q Consensus       101 ---------------dg~i~iwd~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~  159 (451)
                                     ++.|.+.|..+    + ..+..+. -......+.++|||+++++++. +.++.|.|+.+......
T Consensus       280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~  358 (635)
T PRK02888        280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD  358 (635)
T ss_pred             HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence                           23477777766    2 3333333 3455678999999999876654 88999999977443211


Q ss_pred             hhc-ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC----------CceeeeeecccceeEEE---
Q 012996          160 SQR-ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVIDAIA---  225 (451)
Q Consensus       160 ~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~i~~~~---  225 (451)
                      ... ..........--.++ ...+|..++  +...|...|..|..||+.+          ...+..+.-...+-.+.   
T Consensus       359 ~~~~~~~~vvaevevGlGP-LHTaFDg~G--~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~  435 (635)
T PRK02888        359 GKIKPRDAVVAEPELGLGP-LHTAFDGRG--NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASM  435 (635)
T ss_pred             ccCCccceEEEeeccCCCc-ceEEECCCC--CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecC
Confidence            110 111112222222222 345665555  7888888999999999876          23444443222222222   


Q ss_pred             ---ECCCCCEEEEEeC
Q 012996          226 ---LDPAEHVFYAGSR  238 (451)
Q Consensus       226 ---~~~~~~~l~~~~~  238 (451)
                         -.|+|++|++...
T Consensus       436 g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        436 GETKEADGKWLVSLNK  451 (635)
T ss_pred             CCcCCCCCCEEEEccc
Confidence               3678888888653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.53  E-value=3.1e-05  Score=72.09  Aligned_cols=123  Identities=13%  Similarity=0.139  Sum_probs=81.0

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----e---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----V---   75 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~---   75 (451)
                      .+++.|+ .-|.+.+|+-..+... .++... ....+....  .+++..++|.|+.. |.|.|+-++.....    .   
T Consensus        46 ~~l~~Gs-S~G~lyl~~R~~~~~~-~~~~~~-~~~~~~~~~--vs~~e~lvAagt~~-g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   46 EYLAMGS-SAGSVYLYNRHTGEMR-KLKNEG-ATGITCVRS--VSSVEYLVAAGTAS-GRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             ceEEEec-ccceEEEEecCchhhh-cccccC-ccceEEEEE--ecchhHhhhhhcCC-ceEEeehhhccCCCcceeeccc
Confidence            5788888 8999999997665543 333322 222233333  56666666666665 99999988764322    1   


Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc----ceeeeccccCCeeEEEEc
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFS  131 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~  131 (451)
                      ...|...|+|++|++++..+.+|...|.|..-.+.+..    ....+-.-.+.|.-+...
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            12257899999999999999999999999998887621    111222234566666655

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=2.1e-05  Score=74.67  Aligned_cols=199  Identities=12%  Similarity=0.130  Sum_probs=127.0

Q ss_pred             ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC-eeEEEECCCCcEEEEeccCCC-----EEEEEcCC
Q 012996           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGD-----IYMWEVAS  111 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~  111 (451)
                      .+.|    +++.+..++.|+.+ |.|.+++-.-........+... |..+-...+.++|++.+.|+.     ++||+++.
T Consensus        27 ~isc----~~s~~~~vvigt~~-G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   27 AISC----CSSSTGSVVIGTAD-GRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             ceeE----EcCCCceEEEeecc-ccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            5555    77889999999888 8888887443321222223333 555554545578887766644     89999853


Q ss_pred             C------ccee--eecc-----ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          112 G------RLLK--KWHA-----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       112 ~------~~~~--~~~~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      -      .++.  .+..     ...++.+++.+.+-+.+++|-.+|.|..+.-.-..       .......-...-..+|
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-------Drgsr~~~~~~~~~pI  174 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-------DRGSRQDYSHRGKEPI  174 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-------ccccceeeeccCCCCc
Confidence            3      2231  1111     34678899999999999999999999998542211       1111222233456799


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      +++++..++... ++++ ....|.+|.+....+... +. +.....|..+++....|++++. ..+++|+.....
T Consensus       175 TgL~~~~d~~s~-lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~  246 (933)
T KOG2114|consen  175 TGLALRSDGKSV-LFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG  246 (933)
T ss_pred             eeeEEecCCcee-EEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence            999999888422 3333 345699999874442222 33 6677888888886665655543 468999988653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.51  E-value=0.00021  Score=62.12  Aligned_cols=269  Identities=13%  Similarity=0.090  Sum_probs=156.2

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeee--ecCC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVK--SLPA   80 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~--~~~~   80 (451)
                      .+.+.|.|..+++.+..+.....+     -+.  .+|+++.+.++..         -...|.+||..+......  ....
T Consensus        16 ~~rv~viD~d~~k~lGmi~~g~~~-----~~~--~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k   88 (342)
T PF06433_consen   16 TSRVYVIDADSGKLLGMIDTGFLG-----NVA--LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK   88 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEEESSE-----EEE--E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred             cceEEEEECCCCcEEEEeecccCC-----cee--ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence            357999999999988777653321     222  6788887776431         115799999998765432  2211


Q ss_pred             ------CCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           81 ------EPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        81 ------~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                            .....++++.|++++++...  ...|.|.|+..++.+..+...  .+..+.=+++ +-|.+-+.||.+.-..+.
T Consensus        89 ~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen   89 PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             -B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEET
T ss_pred             chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEEC
Confidence                  23345678889988877533  356889999888888776532  1222222222 457788889999998886


Q ss_pred             chhhhhhhhcccccceecccCCcCcee-EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--eee-----------cc
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIV-----------FP  218 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~-----------~~  218 (451)
                      ......      ......|..-..++. .-++...+  ..++-.+.+|.|+--|+.......  .+.           -+
T Consensus       166 ~~Gk~~------~~~t~~F~~~~dp~f~~~~~~~~~--~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP  237 (342)
T PF06433_consen  166 ADGKEA------QKSTKVFDPDDDPLFEHPAYSRDG--GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP  237 (342)
T ss_dssp             STSSEE------EEEEEESSTTTS-B-S--EEETTT--TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred             CCCCEe------EeeccccCCCCcccccccceECCC--CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence            422111      000111222222221 22233333  345557788999998887654321  221           13


Q ss_pred             cceeEEEECCCCCEEEEEeC--------CC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEE
Q 012996          219 SVIDAIALDPAEHVFYAGSR--------DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISG  286 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~  286 (451)
                      +.-.-+++++..+.|++-..        ++  .|.++|+.+.         +.+..+.. ..++.+|..+.  ..+|++.
T Consensus       238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEE
T ss_pred             cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEE
Confidence            44556788876666665322        12  4777777776         44555542 35688999998  4466554


Q ss_pred             -cCCCcEEEEeCCCCceEEEeec
Q 012996          287 -SEDGMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       287 -~~dg~i~iwd~~~~~~~~~~~~  308 (451)
                       ..++.+.+||..+|+.++++..
T Consensus       308 ~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEETTT--EEEEE--
T ss_pred             cCCCCeEEEEeCcCCcEEeehhc
Confidence             5689999999999999999875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.49  E-value=0.00027  Score=61.43  Aligned_cols=269  Identities=15%  Similarity=0.129  Sum_probs=153.8

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCCcceeeeccc---c----C
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH---Y----R  123 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~---~----~  123 (451)
                      +.+.|+|.++++..-.. ..+-.-.+..+|+++.+.+++          ..-.|.+||..+......+.-.   .    .
T Consensus        17 ~rv~viD~d~~k~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEEETTTTEEEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             ceEEEEECCCCcEEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            57999999888764332 223444577899999887642          2235999999988766644211   1    1


Q ss_pred             CeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          124 AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ....++++.|+++++....  -..|.|.|+..           ...+..+...  .  |...-|.+. .-+.+-|.||.+
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-----------~kvv~ei~~P--G--C~~iyP~~~-~~F~~lC~DGsl  159 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAA-----------KKVVGEIDTP--G--CWLIYPSGN-RGFSMLCGDGSL  159 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-----------TEEEEEEEGT--S--EEEEEEEET-TEEEEEETTSCE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCC-----------CceeeeecCC--C--EEEEEecCC-CceEEEecCCce
Confidence            2234577778887766433  34677778743           3333332211  1  222224333 457888999999


Q ss_pred             EEEEcC-CCceeeeee---c--cc-ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc----CCc
Q 012996          202 KVWSLL-KGRLLRNIV---F--PS-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD----HSK  270 (451)
Q Consensus       202 ~iwd~~-~~~~~~~~~---~--~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~  270 (451)
                      .-..+. .|+......   +  .. ....-++...+..++-.+.+|.|+-.|+......... .+.....-..    -.+
T Consensus       160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrPG  238 (342)
T PF06433_consen  160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADGWRPG  238 (342)
T ss_dssp             EEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE-
T ss_pred             EEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccccCcCCc
Confidence            999887 455543221   1  11 1223334444555555788999999998876421100 0000000000    012


Q ss_pred             ceeEEEEec-CCEEEEEc---CCC-------cEEEEeCCCCceEEEeecCCCCeeEEEEEecCc-eeee-ccCCCCcccc
Q 012996          271 AVTCLAYST-GDLLISGS---EDG-------MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNL-GSFSNPHTSS  337 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~-~s~d~~i~iw  337 (451)
                      .-.-+++++ .+.|.+.-   .+|       .|.++|+.+++.+.++.. ..++.+|..+.+.+ +|.+ ...++.+.+|
T Consensus       239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVY  317 (342)
T ss_dssp             SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred             ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence            233467776 44444432   122       388889999999999986 35788999998765 5544 4568999999


Q ss_pred             ccCCCCCCCcc
Q 012996          338 RRHGSQLPPPL  348 (451)
Q Consensus       338 ~~~~~~~~~~~  348 (451)
                      |..++++....
T Consensus       318 D~~tGk~~~~~  328 (342)
T PF06433_consen  318 DAATGKLVRSI  328 (342)
T ss_dssp             ETTT--EEEEE
T ss_pred             eCcCCcEEeeh
Confidence            98876554433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.46  E-value=7.1e-05  Score=69.15  Aligned_cols=228  Identities=14%  Similarity=0.175  Sum_probs=117.7

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe-eCcchhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW-SLLTVFEEC  158 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~  158 (451)
                      .-.+..+.++|+|+++++ +.+|...||.....+..     ..+.-....|.+.++ +++-...+.|.++ ++..     
T Consensus        32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~-----   99 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN-----   99 (443)
T ss_dssp             SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-----
T ss_pred             CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEecCcc-EEEEECCCeEEEEEcCcc-----
Confidence            445789999999999998 56788888873332222     123446788998554 6666668889996 4421     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                             .....+.. ...+..+-.   |  .+|...+.+ .|.+||..+++.+..+..+. |..+.|++++.+++..+.
T Consensus       100 -------~~~k~i~~-~~~~~~If~---G--~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  100 -------EVVKSIKL-PFSVEKIFG---G--NLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             --------TT------SS-EEEEE----S--SSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred             -------ccceEEcC-CcccceEEc---C--cEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence                   11111111 112333322   4  566666544 89999999999999998654 899999999999999875


Q ss_pred             CCcEEEEEccCCCCC-CCCCCce-eeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012996          239 DGSIYIAALNAESPS-TSSYGMH-IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (451)
Q Consensus       239 dg~i~i~d~~~~~~~-~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (451)
                      + .+++++.+..... ....+.. ....+......|.+..|.. +.|+-.+.. .|+.  +..|+ ...+..-..++.=+
T Consensus       165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yll  238 (443)
T PF04053_consen  165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-DCFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLL  238 (443)
T ss_dssp             --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-TEEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEE
T ss_pred             C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-CEEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEE
Confidence            5 5666665432000 0000000 1223322256788888874 344443333 6665  33332 23333335577777


Q ss_pred             EEEecCceeeeccCCCCccccccC
Q 012996          317 LVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       317 ~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ...|..+.+.....|+.+..+.+.
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEccCCEEEEEECCCCEEEEEEC
Confidence            778777777777777777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.46  E-value=6.2e-06  Score=75.31  Aligned_cols=89  Identities=16%  Similarity=0.259  Sum_probs=69.5

Q ss_pred             EEEEECCCCcee----eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996           63 ILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI  138 (451)
Q Consensus        63 i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (451)
                      -.+|+...++..    ........|.|++++|+...|+.|+.||.|.+||...+...  +....-.++.++|+|+|..++
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence            345665544433    22335789999999999999999999999999998766333  223445678999999999999


Q ss_pred             EeeCCCcEEEeeCcc
Q 012996          139 SGSEDGCVRIWSLLT  153 (451)
Q Consensus       139 s~~~dg~i~vwd~~~  153 (451)
                      +|+..|.+.+||+.-
T Consensus       316 V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  316 VGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCceEEEEEeec
Confidence            999999999999854

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.45  E-value=0.00011  Score=62.16  Aligned_cols=205  Identities=13%  Similarity=0.138  Sum_probs=115.8

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-c-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-L-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      ....+..++  |.|+...|++.....+.|..++.+ +++..+. . ..+..-.|++..++.++++--.++.+.++++...
T Consensus        20 ~~~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   20 ILDELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             --S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             ccCCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            334577777  999877666666655999888875 4443332 2 2467889999988888887666889999988432


Q ss_pred             c-c-----eeee-----ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996          113 R-L-----LKKW-----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (451)
Q Consensus       113 ~-~-----~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (451)
                      . .     ...+     ..+...+-.++|.+.++.|+.+-...-..+|.+..........................+.++
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence            1 1     1111     134567899999998777777777767777776431100000000000011122234457888


Q ss_pred             EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc----------ceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------VIDAIALDPAEHVFYAGSRDGSIYIA  245 (451)
Q Consensus       182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (451)
                      .++|... .+++.+..+..|..+| .+|+.+..+....          ..-.|+|+++|++. +.+.-+..+.|
T Consensus       177 ~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f  247 (248)
T PF06977_consen  177 SYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF  247 (248)
T ss_dssp             EEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred             EEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence            8887753 7888888899999999 6788877776432          57789999988544 44555555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.45  E-value=5.9e-05  Score=63.65  Aligned_cols=206  Identities=13%  Similarity=0.194  Sum_probs=101.9

Q ss_pred             CCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           80 AEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        80 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      ...+..|+|+|+. .++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++++.-.++.+.++++......
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3469999999974 56677777888888886 57887776433 356789999888887777666889999988432111


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (451)
                      ..........+.....+...+-+++|.+..  +.|+.+-...-..+|.+....                           
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~---------------------------  150 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFP---------------------------  150 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT---------------------------
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEcccc---------------------------
Confidence            000000000000111233345555555544  233333322222222221100                           


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCC-----
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK-----  310 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----  310 (451)
                      ....+.+.+...            ..........+.+++++|  +.+++.+..+..|..+| .+|+.+..+....     
T Consensus       151 ~~~~~~~~~~~~------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl  217 (248)
T PF06977_consen  151 GGFDLFVSDDQD------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL  217 (248)
T ss_dssp             -SS--EEEE-HH------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred             Cccceeeccccc------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence            001111111100            001112345678999999  77888888899999999 7788887766433     


Q ss_pred             ----CCeeEEEEEecCceeeec
Q 012996          311 ----GPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       311 ----~~v~~l~~s~~~~~l~~~  328 (451)
                          ..--.|+|.++|...+++
T Consensus       218 ~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  218 SKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             SS---SEEEEEE-TT--EEEEE
T ss_pred             ccccCCccEEEECCCCCEEEEc
Confidence                246789999998655553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.45  E-value=5.8e-05  Score=68.73  Aligned_cols=215  Identities=13%  Similarity=0.106  Sum_probs=124.1

Q ss_pred             CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh------hh--------------------h------cccccceecc
Q 012996          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC------ES--------------------Q------RASHLYLHSF  171 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~--------------------~------~~~~~~~~~~  171 (451)
                      .|+.+.|.++..-|++|...|.|.+|.........      ..                    .      .....+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999988889999999999998775432211      00                    0      0112223334


Q ss_pred             cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---------ccceeEEEECC-----CC---CEEE
Q 012996          172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---------PSVIDAIALDP-----AE---HVFY  234 (451)
Q Consensus       172 ~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~i~~~~~~~-----~~---~~l~  234 (451)
                      ....++|++++.+.-|   +++.|+.+|.+.|.|+|....+..-..         ...++++.|..     ++   -.++
T Consensus        83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            4557899999998765   999999999999999998888776442         23577777752     32   5789


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE-Eec--C-------------------CEEEEEcCCCcE
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YST--G-------------------DLLISGSEDGMV  292 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~--~-------------------~~l~s~~~dg~i  292 (451)
                      +|+..|.+.+|.+-...  ...+..........+.++|..+. ++.  +                   .-++....+..+
T Consensus       160 vGTn~G~v~~fkIlp~~--~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSS--NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEETTSEEEEEEEEE-G--GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEeCCCCEEEEEEecCC--CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            99999999999885311  01111122222234556666554 221  1                   123334456779


Q ss_pred             EEEeCCCCceEEEeecCCCCeeEEEE-----EecCceeeeccCCCCccccccCCCC
Q 012996          293 RVWDPITHNIVRMFRLAKGPVNNILV-----VRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~v~~l~~-----s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +++...+.+..+......-....+.+     ...+..|++-..+|.++++.+..-+
T Consensus       238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence            99999888776655422223334455     3467788888999999999987643

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=3.5e-06  Score=79.58  Aligned_cols=109  Identities=13%  Similarity=0.138  Sum_probs=82.9

Q ss_pred             eEEEECCCCcEEEEecc----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           84 KPIAANSHGTYIAGGGQ----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      +-..|+|...++|+++.    .|.|.||- .+|++-.... ..-.+++++|+|..-.|+.|=.-|.+.+|...+      
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~------   90 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT------   90 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC------
Confidence            44568898888887753    57899885 6776543321 112246799999888888888889999998743      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~  207 (451)
                           ...-.....|+.+|..+.|+++|  ..++++..-|.|.+|.+.
T Consensus        91 -----~e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 -----TETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             -----ceeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEee
Confidence                 22233345699999999999999  899999999999999875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.41  E-value=0.00051  Score=63.52  Aligned_cols=180  Identities=9%  Similarity=0.054  Sum_probs=94.2

Q ss_pred             cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-------eeeeccccCCeeEEEEccCC
Q 012996           62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSEDG  134 (451)
Q Consensus        62 ~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~  134 (451)
                      .|.||+.....+.......+.+.++.|+.+..++ +...||.+++||+. |+.       +.........+....+..+|
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            5999998776655444444899999999876655 45789999999985 333       11111122223333444456


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  214 (451)
                      -.+++  .++.+.+.+-......................+........++.+.  ...+....++.+.+.+-.....   
T Consensus       140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~--~~~i~~~~g~~i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR--VVEILLANGETIYIIDENSFKQ---  212 (410)
T ss_pred             EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc--ceEEEEecCCEEEEEEcccccc---
Confidence            44444  3444433322110000000000000000011111110001222332  3444445556666444332211   


Q ss_pred             eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          215 IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      +...+++..+++||+++++|.-..+|.+.+.+.+-.
T Consensus       213 i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  213 IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            334568999999999999999999999998876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.41  E-value=6e-06  Score=75.39  Aligned_cols=87  Identities=24%  Similarity=0.389  Sum_probs=70.1

Q ss_pred             EEEEcCCCce----eeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996          202 KVWSLLKGRL----LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (451)
Q Consensus       202 ~iwd~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  277 (451)
                      .+|++..++.    +..+..++.+.+++++|+...|+.|+.||.|.+||...+.           .......-.++.++|
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-----------t~~~ka~~~P~~iaW  307 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-----------TLLAKAEFIPTLIAW  307 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-----------eeeeeecccceEEEE
Confidence            4577655432    2345578999999999999999999999999999997752           223334567889999


Q ss_pred             ec-CCEEEEEcCCCcEEEEeCCC
Q 012996          278 ST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       278 ~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +| |.++++|+..|.+.+||+.-
T Consensus       308 Hp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  308 HPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCCcEEEEEcCCceEEEEEeec
Confidence            99 99999999999999999764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.3e-05  Score=69.30  Aligned_cols=222  Identities=13%  Similarity=0.042  Sum_probs=127.5

Q ss_pred             EEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      +++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++           ...+..+..+ ..+++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-----------~~~vssy~a~-~~~wSC~  242 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-----------SCVVSSYIAY-NQIWSCC  242 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-----------ceeeeheecc-CCceeee
Confidence            56666555566666678889999999999666 788899999999999955           4455666666 7899999


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCcee-eeee---cccceeEEEE------CCCCCEEEEEeCCCcEEEEEccCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLL-RNIV---FPSVIDAIAL------DPAEHVFYAGSRDGSIYIAALNAESP  252 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~---~~~~i~~~~~------~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (451)
                      |.-+.. ++++.|-..|.|.+||++..+-. ..+.   ...+|..++.      .+.+.+++....+  +..|.+.....
T Consensus       243 wDlde~-h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~  319 (463)
T KOG1645|consen  243 WDLDER-HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE  319 (463)
T ss_pred             eccCCc-ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc
Confidence            998874 89999999999999999865422 1111   1223333332      3344555544433  34454433221


Q ss_pred             CCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCc------EEE-EeCCCCceEEEee-cC-CC------CeeE
Q 012996          253 STSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGM------VRV-WDPITHNIVRMFR-LA-KG------PVNN  315 (451)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~------i~i-wd~~~~~~~~~~~-~~-~~------~v~~  315 (451)
                      .     +.++..+ +..+...++.+.+  ...|++.-.+-+      |.. -|-.+|.++-.-+ .+ .+      .-..
T Consensus       320 ~-----~p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~a  393 (463)
T KOG1645|consen  320 C-----LPCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQA  393 (463)
T ss_pred             C-----CCccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccc
Confidence            0     1111111 2345566667766  334444333210      111 1223333332211 11 11      1112


Q ss_pred             EEEEecCceeee-ccCCCCccccccCCCCCCC
Q 012996          316 ILVVRRPLYLNL-GSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       316 l~~s~~~~~l~~-~s~d~~i~iw~~~~~~~~~  346 (451)
                      +.-.++..+++. +...+.+.+||.......+
T Consensus       394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ  425 (463)
T KOG1645|consen  394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ  425 (463)
T ss_pred             eeccccccEEEEecCCcceeEEeccchhheee
Confidence            223455566654 4555789999988765544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.39  E-value=0.00026  Score=64.57  Aligned_cols=237  Identities=15%  Similarity=0.157  Sum_probs=129.0

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-------------------------------------------eeee
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-------------------------------------------LKKW  118 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------------------------------------~~~~  118 (451)
                      .|+.+.|.++..-|++|...|.|.||.....+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            578899999988999999999998886532210                                           0112


Q ss_pred             ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee---cCC---eeEE
Q 012996          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGV---SATI  192 (451)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~---~~~l  192 (451)
                      ....++|++++.|. =-+++.|..+|.+.|.|++............   ...-......++++.|..   .++   .-.+
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG-----T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccc---cccccccccCeeEEEEEEEecCCCcccceEE
Confidence            23468899999974 4589999999999999996521111000000   001112345677887762   222   2578


Q ss_pred             EEeeCCCcEEEEEcCC---Cceeeee-----ecccceeEEE-ECCC--------------------CCEEEEEeCCCcEE
Q 012996          193 VSASEDRTCKVWSLLK---GRLLRNI-----VFPSVIDAIA-LDPA--------------------EHVFYAGSRDGSIY  243 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~---~~~~~~~-----~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~  243 (451)
                      ++|+..|.+.+|.+.-   +.....+     .+.+.+..+. ++.+                    -.-+++...+..++
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            8999999999998741   2111111     2344444443 2211                    01245555678899


Q ss_pred             EEEccCCCCCCCCCCceeeeeeccCCcceeEEEE-----ec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC----CCe
Q 012996          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-----ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK----GPV  313 (451)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v  313 (451)
                      ++...+.+        .....+ ........+.+     .. +..|++-..+|.|++|.+..-+.+..+..+.    ..+
T Consensus       239 v~~~~~~k--------~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~  309 (395)
T PF08596_consen  239 VFKPPKSK--------GAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL  309 (395)
T ss_dssp             EE-TT-----------EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred             EEeCCCCc--------ccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence            99887754        112222 22222333444     23 6778888999999999999999998887643    246


Q ss_pred             eEEEEEecCceeeeccCC
Q 012996          314 NNILVVRRPLYLNLGSFS  331 (451)
Q Consensus       314 ~~l~~s~~~~~l~~~s~d  331 (451)
                      ....++++|..++-.+..
T Consensus       310 ~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  310 SSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             TT-EE-TTS-EEEE-SSS
T ss_pred             cccEECCCCCEEEEeCcc
Confidence            677889999888666544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.35  E-value=6.5e-05  Score=69.99  Aligned_cols=116  Identities=19%  Similarity=0.177  Sum_probs=90.2

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      ++..+.-.+  +...+++++.|++. |.+.+|+-..+.......  ....+..+..+++..++|.|+..|.|.++-+..+
T Consensus        32 ~~~~v~lTc--~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTC--VDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEE--eecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence            334444444  67889999999998 999999988777654443  3456667778899999999999999999988764


Q ss_pred             cce---ee--e-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996          113 RLL---KK--W-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus       113 ~~~---~~--~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ..-   ..  . +.|...|++++|++++..+++|...|.|..-.+..
T Consensus       109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            221   11  1 34788999999999999999999999999988854

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.32  E-value=0.0036  Score=60.01  Aligned_cols=112  Identities=12%  Similarity=0.126  Sum_probs=65.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCC-CCCceEEec---ceEeeccCcccCCCCCCccEEEEECCCCceeeeecC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS-PPHGLACVG---QRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP   79 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~   79 (451)
                      .|+.++ .++.|.-.|..+|+.+.++..... ......+..   ....-.+..++.++.+ +.|.-.|..+++.......
T Consensus        71 ~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        71 VMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-ARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             EEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-CEEEEEECCCCCEEeeccc
Confidence            455666 688999999999999887754221 011100100   0011123445555566 8999999999988766432


Q ss_pred             CCC--eeEEEECC---CCcEEEEec------cCCCEEEEEcCCCcceeee
Q 012996           80 AEP--IKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        80 ~~~--v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~  118 (451)
                      ...  -..+.-+|   ++ .++++.      .+|.|.-+|.++|+.+..+
T Consensus       149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            110  01111122   34 444443      2688999999999887664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.003  Score=58.08  Aligned_cols=278  Identities=14%  Similarity=0.140  Sum_probs=174.3

Q ss_pred             eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC-CCeeEEEECCCCc
Q 012996           15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGT   93 (451)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~   93 (451)
                      +.+++..+......+..+. .+..+.     +.+++..+.+.......+..-+............. .....++.++.+.
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~-----~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~   86 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVA-----VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN   86 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeE-----EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC
Confidence            7888877777666665443 233333     66677444444332134444444422222211111 3456788888887


Q ss_pred             EE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhccccccee
Q 012996           94 YI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLH  169 (451)
Q Consensus        94 ~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~  169 (451)
                      .+ +....++.|.+.|..+.+.......-. ....++++++++.+..+..   ++.+.+.|..+           .....
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-----------~~~~~  154 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-----------NKVTA  154 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-----------CeEEE
Confidence            54 444456889999987777766654332 5678999999988777665   57888888744           22333


Q ss_pred             cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee-----eeecccceeEEEECCCCCEEEEEeCC---Cc
Q 012996          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-----NIVFPSVIDAIALDPAEHVFYAGSRD---GS  241 (451)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d---g~  241 (451)
                      ....-..+ ..+++.+++. ..+++-..++.|.+.|.......+     ..........+.++|++.++++....   +.
T Consensus       155 ~~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            32222223 7889999883 244444588999999977665553     23344556788999999988776554   48


Q ss_pred             EEEEEccCCCCCCCCCCceeeee--eccCCcceeEEEEec-CCEEEEEc-CCCcEEEEeCCCCceEEEeecCCC---Cee
Q 012996          242 IYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRLAKG---PVN  314 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---~v~  314 (451)
                      +...|..+..         ....  ..+-. ....+..+| +.++.+.. ..+.+.+.|..+......+.....   .+.
T Consensus       233 v~~id~~~~~---------v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~  302 (381)
T COG3391         233 VLKIDTATGN---------VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV  302 (381)
T ss_pred             EEEEeCCCce---------EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence            8888888753         1111  11111 456678889 88887774 458899999998888877664433   456


Q ss_pred             EEEEEecC
Q 012996          315 NILVVRRP  322 (451)
Q Consensus       315 ~l~~s~~~  322 (451)
                      .+++.+..
T Consensus       303 ~~~~~~~~  310 (381)
T COG3391         303 SIAISPLY  310 (381)
T ss_pred             eccceeec
Confidence            66666644

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.28  E-value=0.00071  Score=64.46  Aligned_cols=226  Identities=11%  Similarity=0.086  Sum_probs=129.5

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCC--CCceEEecceEeeccCcccCCC---------CCCccEEEEECCCCc
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP--PHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQ   72 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~---------~d~g~i~vw~~~~~~   72 (451)
                      .++.++ .+|.|.-+|..+|+.+..+......  ...+..-.  -..+ ..+++++         .+ |.+.-+|..+++
T Consensus       112 ~V~v~~-~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP--~v~~-~~v~vg~~~~~~~~~~~~-g~v~alD~~TG~  186 (488)
T cd00216         112 KVFFGT-FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP--TIVK-KLVIIGSSGAEFFACGVR-GALRAYDVETGK  186 (488)
T ss_pred             eEEEec-CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC--EEEC-CEEEEeccccccccCCCC-cEEEEEECCCCc
Confidence            456667 7899999999999999877543321  00011111  1112 2233332         23 789999999888


Q ss_pred             eeeeecCC-C--------------------Ce-eEEEECCCCcEEEEeccCC------------------CEEEEEcCCC
Q 012996           73 VEVKSLPA-E--------------------PI-KPIAANSHGTYIAGGGQSG------------------DIYMWEVASG  112 (451)
Q Consensus        73 ~~~~~~~~-~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~  112 (451)
                      ........ .                    .| ...++.+.+..++.++.++                  .|.-+|..+|
T Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG  266 (488)
T cd00216         187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG  266 (488)
T ss_pred             eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence            77654321 0                    01 1234445566777777665                  6999999999


Q ss_pred             cceeeecc--ccC----CeeEEEEc----cCCc---EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996          113 RLLKKWHA--HYR----AVTCLVFS----EDGS---FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT  179 (451)
Q Consensus       113 ~~~~~~~~--~~~----~v~~~~~~----~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  179 (451)
                      +.+..++.  |..    ......+.    -++.   .++.++.+|.+...|..++........         .     ..
T Consensus       267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~---------~-----~~  332 (488)
T cd00216         267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE---------V-----EQ  332 (488)
T ss_pred             CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe---------e-----cc
Confidence            98877642  211    00001111    1233   577888899999999977533221110         0     00


Q ss_pred             EEEEeecCCeeEEE-----------------EeeCCCcEEEEEcCCCceeeeeecc---------cceeEEEECCCCCEE
Q 012996          180 DIVIGYGGVSATIV-----------------SASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDPAEHVF  233 (451)
Q Consensus       180 ~i~~~~~~~~~~l~-----------------s~~~d~~i~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l  233 (451)
                      .+...+ +  ..++                 ....+|.+.-.|..+++.+......         .+...-.....+..+
T Consensus       333 ~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v  409 (488)
T cd00216         333 PMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV  409 (488)
T ss_pred             ccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence            111111 1  1111                 1234678888999999888777643         111111111256789


Q ss_pred             EEEeCCCcEEEEEccCCC
Q 012996          234 YAGSRDGSIYIAALNAES  251 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~  251 (451)
                      ++++.||.++.+|..+++
T Consensus       410 ~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         410 FAGAADGYFRAFDATTGK  427 (488)
T ss_pred             EEECCCCeEEEEECCCCc
Confidence            999999999999999885

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.26  E-value=0.00086  Score=58.92  Aligned_cols=243  Identities=17%  Similarity=0.180  Sum_probs=131.2

Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccc--
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY--  167 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--  167 (451)
                      ..++.|+.|+.+| +++++........... +...|..+...++-+.|++-+ |+.+.++++................  
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899998888 9999983332222222 233499999998777666654 5999999997643322110000000  


Q ss_pred             -eecccCCcCceeEEE-EeecCCeeEEEEeeCCCcEEEEEcCCC-----ceeeeeecccceeEEEECCCCCEEEEEeCCC
Q 012996          168 -LHSFTGHTLRITDIV-IGYGGVSATIVSASEDRTCKVWSLLKG-----RLLRNIVFPSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       168 -~~~~~~~~~~i~~i~-~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                       ..........+...+ -..... ...+.......|.+|.....     +..+.+..+..+.+++|.  ++.+++|..+ 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-  157 (275)
T ss_pred             cccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-
Confidence             000111222333333 111222 33344444558888877653     466777789999999998  6677777654 


Q ss_pred             cEEEEEccCCCCCCCCCCce---eeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEE--EeecCCCCeeE
Q 012996          241 SIYIAALNAESPSTSSYGMH---IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR--MFRLAKGPVNN  315 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~  315 (451)
                      ...+.|+.+.....-.....   ..........++..+....+.+|++.  |..-.+.| ..|++.+  .+.-. .....
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~-~~p~~  233 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWS-SAPQS  233 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEEEcC-CchhE
Confidence            47888888654211000000   00001112234444444435566543  33333344 3454443  33332 34555


Q ss_pred             EEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          316 ILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       316 l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                      +++.  ..||+..+. +.|-||++.++++.+
T Consensus       234 ~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  234 VAYS--SPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             EEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence            5653  357777665 449999998876544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.23  E-value=0.00031  Score=63.14  Aligned_cols=215  Identities=16%  Similarity=0.197  Sum_probs=123.9

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecc-eEeec----cCcccCCCC-----C---C-ccEEEEECCCC-----cee
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQ-RFLAS----SQLREQPSA-----S---S-GSILYWSWSKP-----QVE   74 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~----~~~l~~~~~-----d---~-g~i~vw~~~~~-----~~~   74 (451)
                      .|++.|..+.+.+.++.-..  ...+.++.. .+..+    ..++++|..     +   . |.|.++++...     +..
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             EEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            57788877777766654332  223333331 12221    355555432     1   1 88999999884     222


Q ss_pred             --eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           75 --VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        75 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                        ......++|++++-- ++. |+++. ++.|.+|++...+ ....-. .....+.++...  +++++.|.....+.++.
T Consensus        81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence              223347889999876 444 54433 4789999998877 333221 122355566555  66899999888888886


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-------Cc----eeeeeeccc
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GR----LLRNIVFPS  219 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~----~~~~~~~~~  219 (451)
                      ....        ........-......++++.+..++  +.++.+..+|.+.++....       +.    ....+..+.
T Consensus       156 ~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~  225 (321)
T PF03178_consen  156 YDEE--------NNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGD  225 (321)
T ss_dssp             EETT--------TE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS
T ss_pred             EEcc--------CCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCC
Confidence            5320        1111111122345668888888676  5899999999999998752       22    234445677


Q ss_pred             ceeEE---EECCC--C------CEEEEEeCCCcEEEE
Q 012996          220 VIDAI---ALDPA--E------HVFYAGSRDGSIYIA  245 (451)
Q Consensus       220 ~i~~~---~~~~~--~------~~l~~~~~dg~i~i~  245 (451)
                      .|+++   ++.|.  +      ..++.++.+|.|...
T Consensus       226 ~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  226 IVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            78888   55552  2      248888899988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=0.00089  Score=58.79  Aligned_cols=211  Identities=15%  Similarity=0.129  Sum_probs=122.8

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-eeeec-----CCCCee
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSL-----PAEPIK   84 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-~~~~~-----~~~~v~   84 (451)
                      ..+.|.-||..+|+.. .+...    ..+.+..  ....+..|+++.   ..+.+++.+.+.. .....     .....+
T Consensus        45 ~~~~i~r~~~~~g~~~-~~~~p----~~~~~~~--~~d~~g~Lv~~~---~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N  114 (307)
T COG3386          45 LGGRIHRLDPETGKKR-VFPSP----GGFSSGA--LIDAGGRLIACE---HGVRLLDPDTGGKITLLAEPEDGLPLNRPN  114 (307)
T ss_pred             CCCeEEEecCCcCceE-EEECC----CCcccce--eecCCCeEEEEc---cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence            5667777777655432 22211    2222222  222333444333   3466677654444 21111     234667


Q ss_pred             EEEECCCCcEEEEecc-----C----CCEEEEEcC-CCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcc
Q 012996           85 PIAANSHGTYIAGGGQ-----S----GDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLT  153 (451)
Q Consensus        85 ~~~~~~~~~~l~~~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~  153 (451)
                      .+...|+|.+-++...     .    ..-.+|-+. .+..+..+..+-..-+.|+||||++.|+.+.. .+.|.-|++..
T Consensus       115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            8888999987766433     0    111344444 56666666666667789999999988777655 47788887742


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCCCceeeeeecc-cceeEEEEC-CCC
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFP-SVIDAIALD-PAE  230 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~~  230 (451)
                      ..    ...........+....+..-.++...++  .+.+++..+| .|.+|+.. ++.+..+..+ ..+++++|- |+.
T Consensus       195 ~~----g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~  267 (307)
T COG3386         195 AT----GPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDL  267 (307)
T ss_pred             cc----CccCCcceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCc
Confidence            00    0001111122233355666777887777  5554555554 89999987 9999999877 778888884 355


Q ss_pred             CEEEEEeC
Q 012996          231 HVFYAGSR  238 (451)
Q Consensus       231 ~~l~~~~~  238 (451)
                      +.|++.+.
T Consensus       268 ~~L~iTs~  275 (307)
T COG3386         268 NTLYITSA  275 (307)
T ss_pred             CEEEEEec
Confidence            55555443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=0.0028  Score=58.32  Aligned_cols=196  Identities=12%  Similarity=0.108  Sum_probs=134.7

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeecccc
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHY  122 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~  122 (451)
                      .++.+..+.+...+++.|.+.|..................++++|++..+.++..   ++.+.+.|..+++.+.....-.
T Consensus        81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~  160 (381)
T COG3391          81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN  160 (381)
T ss_pred             eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence            6777776555555558999999777776655555557889999999987766654   6889999998888887755444


Q ss_pred             CCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CC--
Q 012996          123 RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED--  198 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d--  198 (451)
                      .+ ..++++|+|..++.+. .++.|.+.|........       ........-...-..+.+.+++  ..++... .+  
T Consensus       161 ~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-------~~~~~~~~~~~~P~~i~v~~~g--~~~yV~~~~~~~  230 (381)
T COG3391         161 TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-------GSVGSLVGVGTGPAGIAVDPDG--NRVYVANDGSGS  230 (381)
T ss_pred             Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-------cccccccccCCCCceEEECCCC--CEEEEEeccCCC
Confidence            45 8999999999766655 68899999974411100       0000011122233567888888  4443333 32  


Q ss_pred             CcEEEEEcCCCceeee-eeccc-ceeEEEECCCCCEEEEEeCC-CcEEEEEccCCC
Q 012996          199 RTCKVWSLLKGRLLRN-IVFPS-VIDAIALDPAEHVFYAGSRD-GSIYIAALNAES  251 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~-~~~~~-~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~  251 (451)
                      +.+...|..++..... ..... ....+..+|++..+++.... +.+.+.|..+..
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            6899999988877665 22222 56778999999999998544 789998887753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.18  E-value=0.00013  Score=67.23  Aligned_cols=178  Identities=17%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             EeeccCcccCCCCCC---ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCC--EEEEEcCCCcceeeec
Q 012996           46 FLASSQLREQPSASS---GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGD--IYMWEVASGRLLKKWH  119 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~---g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~--i~iwd~~~~~~~~~~~  119 (451)
                      |+|+++.++......   ..+.+++++++.........+.-..-+|+|||+.|+.. ..||.  |+++|+..+... .+.
T Consensus       200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt  278 (425)
T COG0823         200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLT  278 (425)
T ss_pred             cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecc
Confidence            999998877664332   24899999888766555555666777899999987654 44554  777788776633 344


Q ss_pred             cccCCeeEEEEccCCcEEEEeeC-CCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996          120 AHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS  196 (451)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~  196 (451)
                      ...+.-..-.|+|||+.++-.+. .|.  |.+++...          ...  ..+......-..-.|+|++  .+++..+
T Consensus       279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g----------~~~--~riT~~~~~~~~p~~SpdG--~~i~~~~  344 (425)
T COG0823         279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG----------SQV--TRLTFSGGGNSNPVWSPDG--DKIVFES  344 (425)
T ss_pred             cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC----------Cce--eEeeccCCCCcCccCCCCC--CEEEEEe
Confidence            33344446789999998875544 555  44445432          111  2222222222255688888  5555544


Q ss_pred             C-CCc--EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996          197 E-DRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       197 ~-d~~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                      . +|.  |.+.|+.++...+.+........-.|.|+++.+...+.
T Consensus       345 ~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         345 SSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence            3 444  66777766665555555555566678888877665443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.18  E-value=0.0021  Score=56.49  Aligned_cols=232  Identities=15%  Similarity=0.120  Sum_probs=133.3

Q ss_pred             eccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee---------
Q 012996           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---------  118 (451)
Q Consensus        48 ~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------  118 (451)
                      ..++.|+.|..+ | +.+++...............|..+...|+-+.|++-+ |+.++++++..-......         
T Consensus         5 ~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECC-C-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            356778888665 6 9999984444444444455699999999877776644 599999998765443311         


Q ss_pred             -----ccccCCeeEEE--EccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc-cceecccCCcCceeEEEEeecCCee
Q 012996          119 -----HAHYRAVTCLV--FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH-LYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       119 -----~~~~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                           ......+...+  -...+...+.......|.+|......       ... ...+.+. -...+.+++|..    +
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~-------~~f~~~~ke~~-lp~~~~~i~~~~----~  149 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR-------NSFSKLLKEIS-LPDPPSSIAFLG----N  149 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc-------ccccceeEEEE-cCCCcEEEEEeC----C
Confidence                 11223344444  11233334444445589999885411       011 2333333 346778888873    4


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeeecc-------------cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      .++.|..+ ...+.|+.++.....+...             .++..+.. +++.+|++-  +..-.+.|......     
T Consensus       150 ~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~-----  220 (275)
T PF00780_consen  150 KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPS-----  220 (275)
T ss_pred             EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcC-----
Confidence            66666644 4888999877654433211             12223333 344555542  33334444433211     


Q ss_pred             CceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                        + ...+.- ...+.++++. ..+|++.+.++ |.||++.++++++++...
T Consensus       221 --r-~~~i~W-~~~p~~~~~~-~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  221 --R-KSTIQW-SSAPQSVAYS-SPYLIAFSSNS-IEVRSLETGELVQTIPLP  266 (275)
T ss_pred             --c-ccEEEc-CCchhEEEEE-CCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence              1 112222 2355566665 46777766654 999999999999998764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=0.00025  Score=65.63  Aligned_cols=211  Identities=12%  Similarity=0.073  Sum_probs=108.7

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV  125 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  125 (451)
                      ++|+|+++++++.  |.-.++.........    .+.-....|.+.++ +|+-..++.|.|+.--+.+....++.. ..+
T Consensus        40 ~npngr~v~V~g~--geY~iyt~~~~r~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~  111 (443)
T PF04053_consen   40 HNPNGRFVLVCGD--GEYEIYTALAWRNKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSV  111 (443)
T ss_dssp             E-TTSSEEEEEET--TEEEEEETTTTEEEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-E
T ss_pred             ECCCCCEEEEEcC--CEEEEEEccCCcccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-ccc
Confidence            9999999999554  788888843333222    24456788988655 555566788999743344433344322 233


Q ss_pred             eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996          126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (451)
Q Consensus       126 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd  205 (451)
                      ..|-.   |..|+..+.+ .|.+||+.+           ...+..+...  +|..+.|++++  .+++..+.+ .+.+++
T Consensus       112 ~~If~---G~LL~~~~~~-~i~~yDw~~-----------~~~i~~i~v~--~vk~V~Ws~~g--~~val~t~~-~i~il~  171 (443)
T PF04053_consen  112 EKIFG---GNLLGVKSSD-FICFYDWET-----------GKLIRRIDVS--AVKYVIWSDDG--ELVALVTKD-SIYILK  171 (443)
T ss_dssp             EEEE----SSSEEEEETT-EEEEE-TTT-------------EEEEESS---E-EEEEE-TTS--SEEEEE-S--SEEEEE
T ss_pred             ceEEc---CcEEEEECCC-CEEEEEhhH-----------cceeeEEecC--CCcEEEEECCC--CEEEEEeCC-eEEEEE
Confidence            44432   7777776655 899999954           4455555533  48899999987  777777655 677877


Q ss_pred             cCCC-----------ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996          206 LLKG-----------RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT  273 (451)
Q Consensus       206 ~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  273 (451)
                      ....           .....+. ....|.+.+|..+ -++++ +.. .+..  +-.+.          ...+..-..++.
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge----------~~~i~~ld~~~y  236 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT-TSN-HLKY--LVNGE----------TGIIAHLDKPLY  236 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTE----------EEEEEE-SS--E
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCC----------cceEEEcCCceE
Confidence            5433           0233333 2678889999766 33333 333 5555  33322          222322345666


Q ss_pred             EEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          274 CLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       274 ~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      =+.+.+ .+.+.....|+.|..+.+..
T Consensus       237 llgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  237 LLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEEEEccCCEEEEEECCCCEEEEEECH
Confidence            666666 67777777777777776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.14  E-value=0.0017  Score=58.39  Aligned_cols=218  Identities=19%  Similarity=0.256  Sum_probs=121.2

Q ss_pred             ccEEEEECCCCceeee--ecCCCCeeEEEE---CC----CCcEEEEecc----------CCCEEEEEcCCC----cceee
Q 012996           61 GSILYWSWSKPQVEVK--SLPAEPIKPIAA---NS----HGTYIAGGGQ----------SGDIYMWEVASG----RLLKK  117 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~--~~~~~~v~~~~~---~~----~~~~l~~~~~----------dg~i~iwd~~~~----~~~~~  117 (451)
                      ..|++.|..+.+....  ....+.+.+++.   ..    ...++++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4678888776664422  224556665554   32    2578887743          288999999884    12222


Q ss_pred             e--ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996          118 W--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (451)
Q Consensus       118 ~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~  195 (451)
                      +  ....++|++++-. ++. |+.+. .+.|.+|++...         ..............+.++...  +  ++++.|
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~---------~~l~~~~~~~~~~~i~sl~~~--~--~~I~vg  145 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS---------KTLLKKAFYDSPFYITSLSVF--K--NYILVG  145 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT---------SSEEEEEEE-BSSSEEEEEEE--T--TEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc---------ccchhhheecceEEEEEEecc--c--cEEEEE
Confidence            2  3457889998876 344 44444 468999999551         101111122223355555543  4  689999


Q ss_pred             eCCCcEEEEEcCC-Cceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC--CceeeeeeccCC
Q 012996          196 SEDRTCKVWSLLK-GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY--GMHIIGSLSDHS  269 (451)
Q Consensus       196 ~~d~~i~iwd~~~-~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~  269 (451)
                      ..-..+.++.+.. ...+..+.   .+..+.++.+-++++.++++..+|.+.++............  .......+. ..
T Consensus       146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg  224 (321)
T PF03178_consen  146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LG  224 (321)
T ss_dssp             ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--S
T ss_pred             EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CC
Confidence            9888888875543 22233332   45668888888666799999999999999887533221111  122233332 23


Q ss_pred             cceeEE---EEec----C-----CEEEEEcCCCcEEEE
Q 012996          270 KAVTCL---AYST----G-----DLLISGSEDGMVRVW  295 (451)
Q Consensus       270 ~~v~~~---~~~~----~-----~~l~s~~~dg~i~iw  295 (451)
                      ..|+++   .+.|    .     ..++.++.+|.|.+.
T Consensus       225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            456666   3222    1     136667777777633

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.10  E-value=0.00028  Score=69.02  Aligned_cols=139  Identities=15%  Similarity=0.178  Sum_probs=95.5

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeecc-------CcccCCCCCCccEEEEECCCCc--ee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS-------QLREQPSASSGSILYWSWSKPQ--VE   74 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~d~g~i~vw~~~~~~--~~   74 (451)
                      +|.... ....|.--|+++|+.+..++.+...+  |..    |.|+.       ...++|-.+ ..+..||.+-..  +.
T Consensus       496 il~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~--v~~----~~p~~K~aqlt~e~tflGls~-n~lfriDpR~~~~k~v  567 (794)
T PF08553_consen  496 ILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIP--VVD----IAPDSKFAQLTNEQTFLGLSD-NSLFRIDPRLSGNKLV  567 (794)
T ss_pred             EeecCC-CCCceEEEecCCCcEEEEeecCCCcc--eeE----ecccccccccCCCceEEEECC-CceEEeccCCCCCcee
Confidence            344444 56789999999999999998765332  433    33432       222334444 889999987432  22


Q ss_pred             ee----ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           75 VK----SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        75 ~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      ..    ........|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+++++.+. ..|.+++
T Consensus       568 ~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~  645 (794)
T PF08553_consen  568 DSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID  645 (794)
T ss_pred             eccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence            11    1234577888887776 6899999999999994333334456777899999999999999887665 4777877


Q ss_pred             Cc
Q 012996          151 LL  152 (451)
Q Consensus       151 ~~  152 (451)
                      ..
T Consensus       646 t~  647 (794)
T PF08553_consen  646 TL  647 (794)
T ss_pred             Ee
Confidence            63

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.06  E-value=0.0014  Score=59.80  Aligned_cols=250  Identities=12%  Similarity=0.083  Sum_probs=129.8

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC------------
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------------   79 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~------------   79 (451)
                      .+.+.|||+++++.......    ...+....  |+|+|+.+|....  +.|.+++..++........            
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~----~~~~~~~~--~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw   93 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP----PPKLQDAK--WSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEPGIYNGVPDW   93 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E----ETTBSEEE--E-SSSTEEEEEET--TEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred             ceeEEEEecCCCceEECcCC----ccccccce--eecCCCeeEEEec--CceEEEECCCCCeEEeccccceeEEcCccce
Confidence            35688999998766533322    23444555  9999999988865  7899998876643322211            


Q ss_pred             ------CCCeeEEEECCCCcEEEEeccC-CC-----------------------------------EEEEEcCCCccee-
Q 012996           80 ------AEPIKPIAANSHGTYIAGGGQS-GD-----------------------------------IYMWEVASGRLLK-  116 (451)
Q Consensus        80 ------~~~v~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~iwd~~~~~~~~-  116 (451)
                            -+.-..+-||||+++||....| ..                                   +.|+|+.+++... 
T Consensus        94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~  173 (353)
T PF00930_consen   94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTEL  173 (353)
T ss_dssp             HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE
T ss_pred             eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEe
Confidence                  1234678899999998865332 11                                   3345554444321 


Q ss_pred             ee----ccccCCeeEEEEccCCcEEEEe--eCCC---cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe-ec
Q 012996          117 KW----HAHYRAVTCLVFSEDGSFLISG--SEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG-YG  186 (451)
Q Consensus       117 ~~----~~~~~~v~~~~~~~~~~~l~s~--~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~  186 (451)
                      ..    ..-...+..+.|.+++..|+..  ..+.   .+.++|..++.....       ......+--..-....+. ++
T Consensus       174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~-------~~e~~~~Wv~~~~~~~~~~~~  246 (353)
T PF00930_consen  174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV-------LEETSDGWVDVYDPPHFLGPD  246 (353)
T ss_dssp             ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE-------EEEESSSSSSSSSEEEE-TTT
T ss_pred             eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE-------EEecCCcceeeecccccccCC
Confidence            11    1234457788999988844433  2222   355566644211100       000111111112244444 44


Q ss_pred             CCeeEEEEeeCCCcEE--EEEcCCCceeeeeeccccee-EEEECCCCCEEE-EEeCCC----cEEEEEcc-CCCCCCCCC
Q 012996          187 GVSATIVSASEDRTCK--VWSLLKGRLLRNIVFPSVID-AIALDPAEHVFY-AGSRDG----SIYIAALN-AESPSTSSY  257 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~-~~~~dg----~i~i~d~~-~~~~~~~~~  257 (451)
                      +. .++.....+|.-+  +++...+.........-.|. -+.++++++.++ ++..++    .++..++. .+.      
T Consensus       247 ~~-~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~------  319 (353)
T PF00930_consen  247 GN-EFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE------  319 (353)
T ss_dssp             SS-EEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE------
T ss_pred             CC-EEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC------
Confidence            43 6666666887644  45555555332222445564 467788766554 554422    45555555 321      


Q ss_pred             CceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                          ...+......-..+.||| +++++...
T Consensus       320 ----~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  320 ----PKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             ----EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             ----eEeccCCCCCceEEEECCCCCEEEEEE
Confidence                223333222226899999 77766543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.98  E-value=0.0086  Score=53.42  Aligned_cols=296  Identities=9%  Similarity=0.003  Sum_probs=127.6

Q ss_pred             ECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCC-CCeeEEEECCCCcEE
Q 012996           19 DLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTYI   95 (451)
Q Consensus        19 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l   95 (451)
                      |..||..+..+.....+.........-|.++|+.|+.++.-+  ..+.+.|+.+++........ .......++|+++.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            677888888776555444434333333888997776665533  45666677887776554432 334466778888887


Q ss_pred             EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc--cCCcEEEEeeCCC----------------------cEEEeeC
Q 012996           96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSEDG----------------------CVRIWSL  151 (451)
Q Consensus        96 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg----------------------~i~vwd~  151 (451)
                      +-......|+-.|+.+.+....+......+-...|.  .|+..++..-...                      .|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            665555678889999987666665556655555664  3455543321110                      0111111


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCc-EEEEEcCC-Cceeeeee---cccceeE
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRT-CKVWSLLK-GRLLRNIV---FPSVIDA  223 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~-i~iwd~~~-~~~~~~~~---~~~~i~~  223 (451)
                      .+           . ....+..-...+..+.++|... ..|+-|-   .+.. -+||-+++ +.....+.   ....+..
T Consensus       176 ~t-----------G-~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH  242 (386)
T PF14583_consen  176 KT-----------G-ERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH  242 (386)
T ss_dssp             TT--------------EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred             CC-----------C-ceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence            11           0 0111112233455667777653 3444332   2221 36665543 22222222   2233444


Q ss_pred             EEECCCCCEEEEEe-----CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC-------
Q 012996          224 IALDPAEHVFYAGS-----RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-------  290 (451)
Q Consensus       224 ~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg-------  290 (451)
                      =-|.|+|..+.--+     .+..|.-+|..+...       ..+...    .+...+..++ +.+++-=+.|.       
T Consensus       243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-------~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~  311 (386)
T PF14583_consen  243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-------RRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADA  311 (386)
T ss_dssp             EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-------EEEEEE-----SEEEEEE-TTSSEEEEEE----------
T ss_pred             ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-------eEEEeC----CceeeeEEcCCCCEEEecCCCCCcccccc
Confidence            56889887765422     233455666665431       111111    1222333345 55554434332       


Q ss_pred             ---------cEEEEeCCCCceEEEeecCC----------C-CeeEEEEEecCceeeec-cCCCCcccccc
Q 012996          291 ---------MVRVWDPITHNIVRMFRLAK----------G-PVNNILVVRRPLYLNLG-SFSNPHTSSRR  339 (451)
Q Consensus       291 ---------~i~iwd~~~~~~~~~~~~~~----------~-~v~~l~~s~~~~~l~~~-s~d~~i~iw~~  339 (451)
                               -|+++++..+.... +..|.          . .=....|+|||++++-. ...|...||-+
T Consensus       312 ~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  312 GGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ---------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             ccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                     45677877665432 22221          1 23568999999987654 45566655543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.0079  Score=52.92  Aligned_cols=226  Identities=15%  Similarity=0.104  Sum_probs=126.4

Q ss_pred             EECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           87 AANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        87 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++..-..+..|+++..  -+.+++..++...       .
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-------t   99 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-------T   99 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-------E
Confidence            3566665 3444455677888887655432 222 2223344444334444555433  3556665331110       0


Q ss_pred             cceecccCC-cCceeEEEEeecCCeeEEEEeeC-----------CCcEEEEEcCCCceeeeeec-ccceeEEEECCCCCE
Q 012996          166 LYLHSFTGH-TLRITDIVIGYGGVSATIVSASE-----------DRTCKVWSLLKGRLLRNIVF-PSVIDAIALDPAEHV  232 (451)
Q Consensus       166 ~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~  232 (451)
                      .......+. ....+...+.+++  .+.++...           -|.++.+|. .+...+.+.. -...+.++|||+++.
T Consensus       100 ~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386         100 LLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             EeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence            011111111 2344566777776  44443332           133455554 4554444442 456688999999988


Q ss_pred             EEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC-cEEEEeCCCCceEEEeecC
Q 012996          233 FYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       233 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~  309 (451)
                      |+.+.. .+.|+-|++........  ..........+.+..-.++... |.+.+++..+| .|.+|+.. ++++..+..+
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~--~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIG--GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccC--CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            888755 47898888874111110  0111222333456667778877 66665555554 89999988 9999999988


Q ss_pred             CCCeeEEEEE-ecCceeeecc
Q 012996          310 KGPVNNILVV-RRPLYLNLGS  329 (451)
Q Consensus       310 ~~~v~~l~~s-~~~~~l~~~s  329 (451)
                      ...+++++|- |+.+.|...+
T Consensus       254 ~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         254 VKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCCCccceEeCCCcCEEEEEe
Confidence            7888999986 4555554443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.96  E-value=0.00014  Score=71.11  Aligned_cols=135  Identities=13%  Similarity=0.198  Sum_probs=92.9

Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCC-------CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA-------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                      |........|+-.|+..|+.+..+.....+.-..+.|+       ...-++|-.+..+..||.+-.....   .......
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~---v~~~~k~  573 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL---VDSQSKQ  573 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce---eeccccc
Confidence            33344568899999999999999985544434455553       3456788889999999998653100   0000111


Q ss_pred             eccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996          265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       265 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                      + ......+|++-+...+||+|+.+|.||+||-...+.-..+.+-..||.+|..+.||+++++.+.
T Consensus       574 Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  574 Y-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             c-ccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            1 2345667777766889999999999999994332323345566789999999999999876653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.96  E-value=0.00068  Score=62.56  Aligned_cols=201  Identities=16%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee---CC-CcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS---ED-GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT  179 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  179 (451)
                      +.+-|.. +.....+......+..-+|+|++..++..+   .. ..+.++++.++         ....+..+.++..   
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---------~~~~i~~~~g~~~---  241 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---------KRPVILNFNGNNG---  241 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---------ccceeeccCCccC---
Confidence            4444433 544555555556677788999887765432   22 45888998762         3333444444443   


Q ss_pred             EEEEeecCCeeEEEEeeCCCc--EEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCC
Q 012996          180 DIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPS  253 (451)
Q Consensus       180 ~i~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~  253 (451)
                      .-.|+|++. .++++...||.  |+++|+..+...+ +. ..+.-..-.|+|+|+.++-.+. .|  .|++++.....  
T Consensus       242 ~P~fspDG~-~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--  317 (425)
T COG0823         242 APAFSPDGS-KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--  317 (425)
T ss_pred             CccCCCCCC-EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--
Confidence            357899985 66777777776  5566777666433 43 3333346679999998876654 44  46666666543  


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-CCc--EEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGM--VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                              ...+......-..-.|+| |++|+..+. +|.  |.+.|+.++..++.+.. ......-.|.|++..+...+
T Consensus       318 --------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         318 --------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             --------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-cccCCCCCcCCCCceEEEec
Confidence                    122222222222667889 888887764 344  77777766654444332 33344556777777765544


Q ss_pred             C
Q 012996          330 F  330 (451)
Q Consensus       330 ~  330 (451)
                      .
T Consensus       389 ~  389 (425)
T COG0823         389 G  389 (425)
T ss_pred             c
Confidence            3

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.95  E-value=0.0016  Score=46.55  Aligned_cols=102  Identities=17%  Similarity=0.226  Sum_probs=74.3

Q ss_pred             eeEEEEee-cCC-eeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          178 ITDIVIGY-GGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       178 i~~i~~~~-~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                      |+++++.. +++ .+.|++|+.|..|++|+  ....+..+.....+.+++-... ..|+.+..+|+|-+|+-....    
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl----   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL----   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee----
Confidence            56666654 221 27899999999999998  4578888888888999888776 568889999999999875432    


Q ss_pred             CCCceeeeeeccCCcceeEEEEec-C----CEEEEEcCCCcEEE
Q 012996          256 SYGMHIIGSLSDHSKAVTCLAYST-G----DLLISGSEDGMVRV  294 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~~~-~----~~l~s~~~dg~i~i  294 (451)
                             -..+ ....++++.+.. .    .-|++|-.+|.|-+
T Consensus        75 -------WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 -------WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             -------eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                   1222 234477777766 3    27889988988743

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0003  Score=63.65  Aligned_cols=133  Identities=12%  Similarity=0.244  Sum_probs=98.0

Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCE-------EEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV-------FYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (451)
                      -++.++.....++-.|+..|+.+........|+-+.+.|+.+.       -++|-.+..|.-||.+-...       ..+
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~kl  419 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NKL  419 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------cee
Confidence            4556677778899999999999999997777888888886542       35677889999999985432       123


Q ss_pred             eeeccCC----cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceE-EEeecCCCCeeEEEEEecCceeeeccC
Q 012996          263 GSLSDHS----KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV-RMFRLAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       263 ~~~~~~~----~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                      ...++|.    ....|.+-....++++||.+|.|++||- .+..- ..+.+-..+|..+..+.+|++++..+.
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            3333332    2344444444789999999999999996 44433 346777789999999999998876653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=0.0031  Score=52.81  Aligned_cols=253  Identities=14%  Similarity=0.168  Sum_probs=147.5

Q ss_pred             CCceeeeecCCCCeeEEEECCCC-cEEEEeccCCC-EEEEEcCCCcceeeeccccCC--eeEEEEccCCcEEEEeeCC--
Q 012996           70 KPQVEVKSLPAEPIKPIAANSHG-TYIAGGGQSGD-IYMWEVASGRLLKKWHAHYRA--VTCLVFSEDGSFLISGSED--  143 (451)
Q Consensus        70 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d--  143 (451)
                      .+++.....-......|+|+|.. .-++.+-.-|+ ..++|........++....+.  .-.-.|||||.+|+..-.|  
T Consensus        57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd  136 (366)
T COG3490          57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD  136 (366)
T ss_pred             CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence            34444444445667788888854 44555555555 678898888776665332221  1234699999998876443  


Q ss_pred             ---CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC------------------CCcEE
Q 012996          144 ---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------------------DRTCK  202 (451)
Q Consensus       144 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~------------------d~~i~  202 (451)
                         |.|-|||.+.          ....+..+..|.-....+.+.+++  +.++.+..                  .-.+.
T Consensus       137 ~~rGViGvYd~r~----------~fqrvgE~~t~GiGpHev~lm~DG--rtlvvanGGIethpdfgR~~lNldsMePSlv  204 (366)
T COG3490         137 PNRGVIGVYDARE----------GFQRVGEFSTHGIGPHEVTLMADG--RTLVVANGGIETHPDFGRTELNLDSMEPSLV  204 (366)
T ss_pred             CCCceEEEEeccc----------ccceecccccCCcCcceeEEecCC--cEEEEeCCceecccccCccccchhhcCccEE
Confidence               7899999964          445566777788777888899998  56665432                  12355


Q ss_pred             EEEcCCCceeeeeecc-----cceeEEEECCCCCEEEEEeCCCcE-----EEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          203 VWSLLKGRLLRNIVFP-----SVIDAIALDPAEHVFYAGSRDGSI-----YIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       203 iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i-----~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      +.|..+|..+.+...+     -.+..++..++|..++.+-..|.-     .+=-...+.+. ..... +..+...-...|
T Consensus       205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l-~~~~~-pee~~~~~anYi  282 (366)
T COG3490         205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL-EFLDL-PEEQTAAFANYI  282 (366)
T ss_pred             EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC-cccCC-CHHHHHHHHhhh
Confidence            5666677766655433     457778888888776655333210     00000111000 00000 000111223567


Q ss_pred             eEEEEec-CCEEEEEc-CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          273 TCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       273 ~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      -+++.+. ..+++..+ ..+...+||..+|..+..-...  ....++  +...-++..+.+|.+.+++..
T Consensus       283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s~~  348 (366)
T COG3490         283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYSRA  348 (366)
T ss_pred             hheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCceEEecccc
Confidence            7888887 44554444 4556789999999887654432  122233  334456666778888877533

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.92  E-value=0.0081  Score=56.32  Aligned_cols=238  Identities=9%  Similarity=0.028  Sum_probs=123.5

Q ss_pred             EeeccCcccCC----CCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC-----------CEEEEEcC
Q 012996           46 FLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG-----------DIYMWEVA  110 (451)
Q Consensus        46 ~~~~~~~l~~~----~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~  110 (451)
                      ++|+|+++|.+    |.+-..+++.|+.+++.............+.|.++++.|+....+.           .|+.|.+.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g  210 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG  210 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence            89999999865    3333579999999987654433322333499999988776654332           37888876


Q ss_pred             CCcce--eeeccccCC--eeEEEEccCCcEEEEeeCC----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          111 SGRLL--KKWHAHYRA--VTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       111 ~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      ++..-  ..+......  ...+..++|+++|+.....    ..+.+.++....       ........+..+...+....
T Consensus       211 t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-------~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  211 TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-------SPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT-------TSS-SEEEEEESSSS-EEEE
T ss_pred             CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC-------CCcCCcEEEeCCCCceEEEE
Confidence            66432  344443333  5678899999997754332    346777775410       00112222232333333322


Q ss_pred             EeecCCeeEEEEee---CCCcEEEEEcCCCce---e-eeeeccc--ceeEEEECCCCCEEEEE-eCCC--cEEEEEcc-C
Q 012996          183 IGYGGVSATIVSAS---EDRTCKVWSLLKGRL---L-RNIVFPS--VIDAIALDPAEHVFYAG-SRDG--SIYIAALN-A  249 (451)
Q Consensus       183 ~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~---~-~~~~~~~--~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~-~  249 (451)
                      -+.++  .+++...   ..+.|.-.++.....   . ..+.+..  .+..+.  ..+++|+.. ..++  .|+++++. .
T Consensus       284 ~~~~~--~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  284 DHHGD--RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEETT--EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EccCC--EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEECCCC
Confidence            22333  3444332   235677777776652   2 2222333  344444  344455544 3444  68888888 3


Q ss_pred             CCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcC---CCcEEEEeCCCCceE
Q 012996          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSE---DGMVRVWDPITHNIV  303 (451)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~  303 (451)
                      .         ........-.+.|..+...+  ..+.++.++   -+++.-||+.+++..
T Consensus       360 ~---------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  360 K---------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             E---------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             c---------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            2         11111111233455555444  333333332   356888888887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.83  E-value=0.0024  Score=61.77  Aligned_cols=223  Identities=9%  Similarity=0.116  Sum_probs=111.6

Q ss_pred             cEEEEECCCCceeeeecCCCCe--eEEEECCCCcEEEEeccC------CCEEEEEcCCCcce--eeeccccCCeeEEEEc
Q 012996           62 SILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFS  131 (451)
Q Consensus        62 ~i~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~  131 (451)
                      .+..||..+.........+.+.  .+++. -++...++||.+      ..+..||..++.-.  ..+....... +++ .
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-V  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-E
Confidence            5677888776544322211111  12222 356777777753      24778887766421  1121111111 222 2


Q ss_pred             cCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-------
Q 012996          132 EDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-------  199 (451)
Q Consensus       132 ~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-------  199 (451)
                      -+++..+.||.++     .+..||..+         ..+..+..+....... +++ ..++  .+.+.|+.++       
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~---------~~W~~~~~mp~~r~~~-~~~-~~~g--~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGD---------DKWKMLPDMPIALSSY-GMC-VLDQ--YIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCC---------CeEEECCCCCcccccc-cEE-EECC--EEEEEeCCCcccccccc
Confidence            2577778888764     377888754         2222222221111111 111 2234  6666676542       


Q ss_pred             ----------------cEEEEEcCCCceee--eeecccceeEEEECCCCCEEEEEeCCC------cEEEEEccC-CCCCC
Q 012996          200 ----------------TCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGSRDG------SIYIAALNA-ESPST  254 (451)
Q Consensus       200 ----------------~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~  254 (451)
                                      .+..||..+.+-..  .+..+..-.+++ .-++++.++|+.++      .+..||..+ ..   
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---  492 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---  492 (557)
T ss_pred             cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC---
Confidence                            47778887764332  221111111122 22566667776542      366788776 33   


Q ss_pred             CCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC--cEEEEeCCCCceEEEeecC
Q 012996          255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG--MVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       255 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~  309 (451)
                          |..+..+.........+.+ .+.+.++||.||  .+..||+.+.+-...-..|
T Consensus       493 ----W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~  544 (557)
T PHA02713        493 ----WELITTTESRLSALHTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH  544 (557)
T ss_pred             ----eeEccccCcccccceeEEE-CCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence                3444444433333333333 378888999888  6778887776544333333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.82  E-value=0.0041  Score=60.07  Aligned_cols=225  Identities=14%  Similarity=0.219  Sum_probs=120.4

Q ss_pred             CCCCcEEEEeccCC------CEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCC-C-----cEEEeeCcch
Q 012996           89 NSHGTYIAGGGQSG------DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-G-----CVRIWSLLTV  154 (451)
Q Consensus        89 ~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-----~i~vwd~~~~  154 (451)
                      +..+.++++|+.++      .+..||..++.-..  .+.. ...-.++++. ++...++||.| |     .+-.||..+ 
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~-  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT-  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC-
Confidence            33466778887774      47888887774322  2222 2223344444 45778889888 3     466777754 


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc-----EEEEEcCCCceeeeeecccceeEEEECC-
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-----CKVWSLLKGRLLRNIVFPSVIDAIALDP-  228 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~i~~~~~~~-  228 (451)
                              ..+..+.......... +++ .-++  .+.++|+.||.     +-.||..+.+--..-.........+... 
T Consensus       359 --------~~W~~~a~M~~~R~~~-~v~-~l~g--~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~  426 (571)
T KOG4441|consen  359 --------NQWTPVAPMNTKRSDF-GVA-VLDG--KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL  426 (571)
T ss_pred             --------CceeccCCccCccccc-eeE-EECC--EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE
Confidence                    2222222222211111 111 1233  68888888874     7778877655433222222222222222 


Q ss_pred             CCCEEEEEeCCC------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc-----EEEEeC
Q 012996          229 AEHVFYAGSRDG------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM-----VRVWDP  297 (451)
Q Consensus       229 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~-----i~iwd~  297 (451)
                      +|.+.++|+.++      .+..||..+..       |..+..+..-..... ++.-.+.+.+.||.|+.     |..||.
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcC
Confidence            677777787555      46778877764       333333332222222 33333778888887773     778888


Q ss_pred             CCCceEEEeecCCCCeeEEEEE-ecCceeeeccCCCCcccc
Q 012996          298 ITHNIVRMFRLAKGPVNNILVV-RRPLYLNLGSFSNPHTSS  337 (451)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~s~d~~i~iw  337 (451)
                      .+.+-... ..-..+...+... -++...++|+.||.-++-
T Consensus       499 ~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~  538 (571)
T KOG4441|consen  499 ETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLN  538 (571)
T ss_pred             CCCceeEc-ccCccccccccEEEECCEEEEEecccCccccc
Confidence            76554333 2122233333333 356677888877764443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.80  E-value=4.6e-05  Score=61.30  Aligned_cols=142  Identities=13%  Similarity=0.143  Sum_probs=96.6

Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (451)
                      ..+...+.+|.|+-++++..+....-.  +...   .....-+..+++|+.+|.|++|.......        .......
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--------~~d~~~s   99 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--------HSDRVCS   99 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccch--------HHHhhhc
Confidence            345566778888888887543322111  1111   22223567899999999999998874321        1111111


Q ss_pred             CCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCC-CCeeEEEEEecCceeeec--cCCCCccccccCCC
Q 012996          268 HSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG--SFSNPHTSSRRHGS  342 (451)
Q Consensus       268 ~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~--s~d~~i~iw~~~~~  342 (451)
                      -...|-++.-.-  +.+..+++.||.|+.|++.-.+.+.....|. .++..+..+..+++++.+  |.|..++.|++..-
T Consensus       100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            122333322221  4588899999999999999999998888888 788888889889999998  99999999998743

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.00077  Score=66.25  Aligned_cols=99  Identities=20%  Similarity=0.372  Sum_probs=74.0

Q ss_pred             cCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE
Q 012996           50 SQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC  127 (451)
Q Consensus        50 ~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  127 (451)
                      +..++.+++. |.+...|+...-..  .......+|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus        99 ~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3445555555 88888887764331  22234679999999999999999999999999999999999988877776666


Q ss_pred             EEE---ccCCcEEEEeeCCCcEEEeeC
Q 012996          128 LVF---SEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus       128 ~~~---~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      +-+   ..++..++++..-|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            544   445666778777665  6665

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00015  Score=66.82  Aligned_cols=95  Identities=15%  Similarity=0.253  Sum_probs=76.4

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCee-EEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK-PIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  113 (451)
                      -+..+..+.  |+|.-..+|.+..+ |.|.+..++-.++.....|..+++ +++|.|||+.||+|-.||+|++.|+.++.
T Consensus        19 l~~~i~~~e--wnP~~dLiA~~t~~-gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   19 LPINIKRIE--WNPKMDLIATRTEK-GELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cccceEEEE--EcCccchhheeccC-CcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            334566666  99999999999998 999999988444444444777887 99999999999999999999999999998


Q ss_pred             ceeee-ccccCCeeEEEEcc
Q 012996          114 LLKKW-HAHYRAVTCLVFSE  132 (451)
Q Consensus       114 ~~~~~-~~~~~~v~~~~~~~  132 (451)
                      .+..+ ......|.++.|.+
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            77663 23456788888863

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00016  Score=66.68  Aligned_cols=73  Identities=25%  Similarity=0.304  Sum_probs=66.5

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCee-EEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT-CLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|+.+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            4568899999999999999999999999987 777888887888887 999999999999999999999999966

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.74  E-value=0.0027  Score=45.44  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=68.4

Q ss_pred             eeEEEEcc---CC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          125 VTCLVFSE---DG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       125 v~~~~~~~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      |+++++..   || +.|++|+.|..|++|+-..             .+..+. -...|++++-...   ..++.+-.+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGT   64 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEIT-ETDKVTSLCSLGG---GRFAYALANGT   64 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEEe-cccceEEEEEcCC---CEEEEEecCCE
Confidence            56676655   22 6799999999999998633             344444 3456677766555   47999999999


Q ss_pred             EEEEEcCCCceeeeeecccceeEEEECC-C--C-CEEEEEeCCCcEE
Q 012996          201 CKVWSLLKGRLLRNIVFPSVIDAIALDP-A--E-HVFYAGSRDGSIY  243 (451)
Q Consensus       201 i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~dg~i~  243 (451)
                      |-+|+-  ...+..+.....+.++++.. +  | .-|++|-.+|.|-
T Consensus        65 VGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   65 VGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999984  34445555555566666544 2  2 3688888888774

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.74  E-value=0.0051  Score=59.44  Aligned_cols=225  Identities=16%  Similarity=0.179  Sum_probs=120.9

Q ss_pred             cCcccCCCCCC-----ccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccC-C-----CEEEEEcCCCccee
Q 012996           50 SQLREQPSASS-----GSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQS-G-----DIYMWEVASGRLLK  116 (451)
Q Consensus        50 ~~~l~~~~~d~-----g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~~  116 (451)
                      +..+++||...     ..+..||..++.......  ....-.+++.. ++...++||.| |     .+..||...++-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            44445555542     578888888775432221  22233444444 46778888888 3     47788877665222


Q ss_pred             --eeccccCCeeEEEEccCCcEEEEeeCCCc-----EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE-eecCC
Q 012996          117 --KWHAHYRAVTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI-GYGGV  188 (451)
Q Consensus       117 --~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~  188 (451)
                        .+...........+  +|...++||.||.     +-.||..+         ..+..+.....   ...+... ..++ 
T Consensus       364 ~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~---------~~W~~va~m~~---~r~~~gv~~~~g-  428 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVT---------NKWTPVAPMLT---RRSGHGVAVLGG-  428 (571)
T ss_pred             cCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCC---------CcccccCCCCc---ceeeeEEEEECC-
Confidence              22222222212222  5888889999875     66677654         33333332222   2222222 2344 


Q ss_pred             eeEEEEeeCCC------cEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCC
Q 012996          189 SATIVSASEDR------TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTS  255 (451)
Q Consensus       189 ~~~l~s~~~d~------~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~  255 (451)
                       .+.++|+.++      .+..||..++.-...-.  ....-..++ .-++.+.++|+.|+     .|..||..+..    
T Consensus       429 -~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~----  502 (571)
T KOG4441|consen  429 -KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ----  502 (571)
T ss_pred             -EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc----
Confidence             6777777554      56788888765433222  111111222 22677778888776     36778877754    


Q ss_pred             CCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC-----cEEEEeCCCC
Q 012996          256 SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG-----MVRVWDPITH  300 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~  300 (451)
                         |..+..+......+....+. +...++|+.||     +|..||..+.
T Consensus       503 ---W~~v~~m~~~rs~~g~~~~~-~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  503 ---WTMVAPMTSPRSAVGVVVLG-GKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ---eeEcccCccccccccEEEEC-CEEEEEecccCccccceeEEcCCCCC
Confidence               34443343333333333333 67788888776     3666776554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.72  E-value=0.042  Score=51.53  Aligned_cols=223  Identities=14%  Similarity=0.164  Sum_probs=112.6

Q ss_pred             eeEEEECCCCcEEEEe-ccCCC----EEEEEcCCCcceeee-ccccCCeeEEEEccCCcEEEEeeCCC-----------c
Q 012996           83 IKPIAANSHGTYIAGG-GQSGD----IYMWEVASGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDG-----------C  145 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~-~~dg~----i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg-----------~  145 (451)
                      +....++|+|+++|.+ +..|.    ++++|+.+++.+... ...  ....+.|.++++.|+....+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467889999999865 33343    999999999766432 211  123499999988776554333           3


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCC---CcEEEEEcCCC----ceeeee-e
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASED---RTCKVWSLLKG----RLLRNI-V  216 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d---~~i~iwd~~~~----~~~~~~-~  216 (451)
                      |..|.+.+...       ....+..-..+......+..+.++  ++++. ....   ..+.+.|+..+    .....+ .
T Consensus       204 v~~~~~gt~~~-------~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  204 VYRHKLGTPQS-------EDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             EEEEETTS-GG-------G-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             EEEEECCCChH-------hCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence            77888755211       111222222222224567777777  55553 3322   34788888764    222222 2


Q ss_pred             cccce-eEEEECCCCCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--ceeEEEEecCCEEEE-EcCC
Q 012996          217 FPSVI-DAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYSTGDLLIS-GSED  289 (451)
Q Consensus       217 ~~~~i-~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~s-~~~d  289 (451)
                      ....+ ..+... .+.+++...   ..+.|...++......      .....+..|..  .+..+... +++|+. .-.+
T Consensus       275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~  346 (414)
T PF02897_consen  275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPEDEDVSLEDVSLF-KDYLVLSYREN  346 (414)
T ss_dssp             SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--SSSEEEEEEEEE-TTEEEEEEEET
T ss_pred             CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCCCCceeEEEEEEE-CCEEEEEEEEC
Confidence            22233 333333 333333332   2346666777665310      01114444554  45555444 444444 4445


Q ss_pred             C--cEEEEeCCCCceEEEeecC-CCCeeEEEEEecCce
Q 012996          290 G--MVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLY  324 (451)
Q Consensus       290 g--~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~  324 (451)
                      +  .|+++++..+.....+... .+.|..+...+++..
T Consensus       347 ~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~  384 (414)
T PF02897_consen  347 GSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDE  384 (414)
T ss_dssp             TEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SE
T ss_pred             CccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCE
Confidence            4  4889998844555554432 344555554454443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.71  E-value=0.0001  Score=41.95  Aligned_cols=38  Identities=42%  Similarity=0.820  Sum_probs=33.6

Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      +....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778889999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.70  E-value=0.0041  Score=56.75  Aligned_cols=83  Identities=18%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe-eEEEEEec-----------------C
Q 012996          262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRR-----------------P  322 (451)
Q Consensus       262 ~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~-----------------~  322 (451)
                      ...+.+....+.+++.+| +.+.++...=|.|.++|+.++..++.+++..+.- .-+.....                 .
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            345556667789999999 8888888888999999999999998888765421 11111111                 1


Q ss_pred             cee-eeccCCCCccccccCCCCC
Q 012996          323 LYL-NLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       323 ~~l-~~~s~d~~i~iw~~~~~~~  344 (451)
                      .+| +-+..-|.+-||..+.+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCE
Confidence            223 4456678888898875543

>PHA02713 hypothetical protein; Provisional

Probab=97.66  E-value=0.015  Score=56.31  Aligned_cols=215  Identities=7%  Similarity=0.078  Sum_probs=103.6

Q ss_pred             CEEEEEcCCCcce--eeeccccCCeeEEEEccCCcEEEEeeCC------CcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996          103 DIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus       103 ~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      .+..||..+++-.  ..+...... .+++. -++..++.||.+      ..+..||..+.         ....+......
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n---------~W~~~~~m~~~  341 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK---------IHVELPPMIKN  341 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC---------eEeeCCCCcch
Confidence            4778888766422  222211111 12222 256777777754      23667777541         11111111111


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeeecccce--eEEEECCCCCEEEEEeCCC-------
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDG-------  240 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg-------  240 (451)
                      ... .+++ ..++  .+.+.|+.++     .+..||..+.+-...-..+.+.  .+++ .-++.+.+.|+.++       
T Consensus       342 R~~-~~~~-~~~g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        342 RCR-FSLA-VIDD--TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             hhc-eeEE-EECC--EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccc
Confidence            111 1222 2344  6777777654     4788998876433221212111  1111 12577777777543       


Q ss_pred             ----------------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC------cEEEEeCC
Q 012996          241 ----------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG------MVRVWDPI  298 (451)
Q Consensus       241 ----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg------~i~iwd~~  298 (451)
                                      .+..||..+..       |..+..+....... +++...+.+.+.||.++      .+..||..
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~  488 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN  488 (557)
T ss_pred             cccccccccccccccceEEEECCCCCe-------EeecCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence                            36667766643       23232222211111 22222366667776542      46789988


Q ss_pred             C-C--ceEEEeecCCCCeeEEEEEecCceeeeccCCC--CccccccCCCC
Q 012996          299 T-H--NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQ  343 (451)
Q Consensus       299 ~-~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~--~i~iw~~~~~~  343 (451)
                      + .  ..+..+........  ...-+|+..++|+.|+  .+-.||..+.+
T Consensus       489 ~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        489 TYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCCCeeEccccCcccccce--eEEECCEEEEEeeecceeehhhcCccccc
Confidence            6 3  33333333222222  2223778889999888  55566655443

>smart00320 WD40 WD40 repeats

Probab=97.65  E-value=8.3e-05  Score=42.37  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=35.0

Q ss_pred             CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677888899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.62  E-value=0.084  Score=52.25  Aligned_cols=310  Identities=15%  Similarity=0.114  Sum_probs=169.9

Q ss_pred             EEeecCCCCCCeE-EEECccCceeeee-ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--e---
Q 012996            4 LIASSSVADTGIG-CWDLESGAEQLRY-KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--K---   76 (451)
Q Consensus         4 ~l~s~~~~dg~i~-vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--~---   76 (451)
                      ++|.|. .+..+. +--+.....+... .....-++.|....  +-.+..+|.++..| |.+.-+.++......  .   
T Consensus       550 ~~aVG~-Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~--~e~d~~yLlvalgd-G~l~~fv~d~~tg~lsd~Kk~  625 (1096)
T KOG1897|consen  550 LLAVGL-WSDISMILTFLPDLILITHEQLSGEIIPRSILLTT--FEGDIHYLLVALGD-GALLYFVLDINTGQLSDRKKV  625 (1096)
T ss_pred             EEEEEe-ecceEEEEEECCCcceeeeeccCCCccchheeeEE--eeccceEEEEEcCC-ceEEEEEEEcccceEcccccc
Confidence            455555 333332 2223333333222 33445667777777  77778899998888 998888766443322  1   


Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE-EEcc--CCcEEEEeeCCCcEEEeeCcc
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL-VFSE--DGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .....|+.--.|+..++.-+-+..|.-..+|.- ++++..+--. -..+..+ .|+.  -...++++.. +.+++..+..
T Consensus       626 ~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~  702 (1096)
T KOG1897|consen  626 TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLS-LKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDE  702 (1096)
T ss_pred             ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccc-hHHhhhhcccccccCCceEEEecC-CceEEEEecc
Confidence            223567777777665444333455666667663 4444332111 1111111 2222  1234555544 4677776644


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-----------C---CcEEEEEcCCCceeeeeec--
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----------D---RTCKVWSLLKGRLLRNIVF--  217 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-----------d---~~i~iwd~~~~~~~~~~~~--  217 (451)
                      ..         ...+++..-+ .....+++.+..  ..+.+.+.           .   ..++++|-.+.+.+.....  
T Consensus       703 iq---------kl~irtvpl~-~~prrI~~q~~s--l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~  770 (1096)
T KOG1897|consen  703 IQ---------KLHIRTVPLG-ESPRRICYQESS--LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER  770 (1096)
T ss_pred             hh---------hcceeeecCC-CChhheEecccc--eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc
Confidence            21         1122222211 122333443321  12222111           1   2477788777766655542  


Q ss_pred             c---cceeEEEECCC-CCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996          218 P---SVIDAIALDPA-EHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (451)
Q Consensus       218 ~---~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l  283 (451)
                      .   ..+.++.|..+ +.++++|+.          .|+|.+|.+.....      .+.+.... -.+.+.++..-.|+++
T Consensus       771 ~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------L~~v~e~~-v~Gav~aL~~fngkll  843 (1096)
T KOG1897|consen  771 NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------LELVAETV-VKGAVYALVEFNGKLL  843 (1096)
T ss_pred             cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------eeeeeeee-eccceeehhhhCCeEE
Confidence            2   23455557776 777888763          47788887766211      12222111 2345555444336555


Q ss_pred             EEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       284 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      |.  -+..|++|+..+.+.++.-..+..++..+...-.|..++.|..-+.+.+-..+.
T Consensus       844 A~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~  899 (1096)
T KOG1897|consen  844 AG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG  899 (1096)
T ss_pred             Ee--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence            54  466899999999988888778889999999999999999998777765554443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00015  Score=58.38  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             eEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeE-EEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          190 ATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDA-IALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      ..+++|+.+|.|++|...-. .....+. ....|.+ +.--.++.+.++++.+|.|+.|++...
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence            67899999999999987621 1111111 1122222 222235568899999999999998765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.042  Score=52.62  Aligned_cols=183  Identities=19%  Similarity=0.206  Sum_probs=94.2

Q ss_pred             CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996          102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (451)
Q Consensus       102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (451)
                      -.|+||+. +|.++..+.-..+.+-.+.|+.+. .|++...+|++.+|++........        -..+......|..+
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~--------svg~e~~~~~I~ec  133 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN--------SVGFESQMSDIVEC  133 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc--------ccccccccCceeEE
Confidence            45888985 677776665445588899999765 577778999999999843211110        00112223344445


Q ss_pred             EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-c-cce--eEEEECCCCC---EEEEEe-CCCcEEEEEccCCCCC
Q 012996          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVI--DAIALDPAEH---VFYAGS-RDGSIYIAALNAESPS  253 (451)
Q Consensus       182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~i--~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~~~~  253 (451)
                      .+..+|    ++.-..+|.+.+-.-........+.. + ...  .|-...+++.   .++-.. ..+ ..++......  
T Consensus       134 ~~f~~G----Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~--  206 (829)
T KOG2280|consen  134 RFFHNG----VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR--  206 (829)
T ss_pred             EEecCc----eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc--
Confidence            554444    33334445554433222111222210 1 111  2222222211   111100 001 0111111111  


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                            .....+......+..+..|| .++|+--..+|.|.+-+....+++.++.
T Consensus       207 ------~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  207 ------VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ------ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence                  01112222235677889999 9999999999999999988877777766

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.057  Score=45.77  Aligned_cols=265  Identities=9%  Similarity=-0.001  Sum_probs=150.9

Q ss_pred             cCcccCCCCCCccEEEEECCCCceeeeec--CC-CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccC
Q 012996           50 SQLREQPSASSGSILYWSWSKPQVEVKSL--PA-EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYR  123 (451)
Q Consensus        50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~  123 (451)
                      +++...+-.+ .-+++.|+.++..+....  .. +--.++..+  |++..++..+.-+.+.|+.+..   +...+.....
T Consensus        96 e~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~  172 (370)
T COG5276          96 EEYVYVADWS-SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG  172 (370)
T ss_pred             ccEEEEEcCC-CceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence            4444444444 779999998776554432  22 344555554  8888887766668888987653   3334444445


Q ss_pred             CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i  203 (451)
                      .-..++.|  |++-..+..|+-+.+-|+...        ....++.. ......+.++..+++    +....-.+.-+.+
T Consensus       173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp--------~sPvli~~-~n~g~g~~sv~vsdn----r~y~vvy~egvli  237 (370)
T COG5276         173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNP--------HSPVLIGS-YNTGPGTYSVSVSDN----RAYLVVYDEGVLI  237 (370)
T ss_pred             CceeEEEe--cCeEEEEEeCCCeEEEEccCC--------CCCeEEEE-EecCCceEEEEecCC----eeEEEEcccceEE
Confidence            55677777  777778888999999999652        11222222 222235666655554    3333334445778


Q ss_pred             EEcCCCceeeeee--cccceeEE-EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecC
Q 012996          204 WSLLKGRLLRNIV--FPSVIDAI-ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG  280 (451)
Q Consensus       204 wd~~~~~~~~~~~--~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  280 (451)
                      -|....+....+.  ....+.++ .+.-.+++.++...+.-+.+.|..+....      .....+......-..+..+ +
T Consensus       238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp------fl~ss~~t~g~~a~gi~ay-~  310 (370)
T COG5276         238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP------FLSSSLDTAGYQAAGIRAY-G  310 (370)
T ss_pred             EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC------chhccccCCCccccceEEe-c
Confidence            8877666444443  22222222 23336677777777777777787765321      1111111111122333333 4


Q ss_pred             CEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          281 DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       281 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      .++..+..+ +..+-+....+......+....+.+...+-+.+.+.+...++.+.+|+..
T Consensus       311 ~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         311 NYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             CeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence            555555444 44555655444444444444445566666667788888889999888754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=0.063  Score=45.66  Aligned_cols=189  Identities=15%  Similarity=0.178  Sum_probs=112.7

Q ss_pred             cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc--cCCcCceeEEEEeecCCeeEEEEeeC
Q 012996          120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSASE  197 (451)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~~l~s~~~  197 (451)
                      +-...+.++.|+|+.+.|++......-.|+=-.+           ...+.+.  .+ -.....|.+..++  .+.++--.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-----------GdlirtiPL~g-~~DpE~Ieyig~n--~fvi~dER  148 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-----------GDLIRTIPLTG-FSDPETIEYIGGN--QFVIVDER  148 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecC-----------CceEEEecccc-cCChhHeEEecCC--EEEEEehh
Confidence            4445599999999999888887776665553322           2222222  22 1222345665555  77777778


Q ss_pred             CCcEEEEEcCCCceee-----eee-----c-ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC-CCceeeeee
Q 012996          198 DRTCKVWSLLKGRLLR-----NIV-----F-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS-YGMHIIGSL  265 (451)
Q Consensus       198 d~~i~iwd~~~~~~~~-----~~~-----~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~  265 (451)
                      ++.+.++.+.......     .+.     + +.....++|+|....|+++-...-+.||........... ....+....
T Consensus       149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~  228 (316)
T COG3204         149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR  228 (316)
T ss_pred             cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence            8888888776543221     111     2 456778999999999999888887777776643211000 000000000


Q ss_pred             ccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC---------CeeEEEEEecCc
Q 012996          266 SDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG---------PVNNILVVRRPL  323 (451)
Q Consensus       266 ~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~l~~s~~~~  323 (451)
                      .-.-..|.++.|++  +.+|+-+.+++.+.-.|. +|..+..+..+.+         .--.++..++|.
T Consensus       229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence            00124678888988  778888888888888884 4555655543322         234566666654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.40  E-value=0.11  Score=47.90  Aligned_cols=235  Identities=11%  Similarity=0.065  Sum_probs=121.6

Q ss_pred             EEEeecCCCCCCeEEEECccCc-----eeeeeecCCCCCCceEEec-ceEeec--cCcccCCCCCCccEEEEECCCC--c
Q 012996            3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVG-QRFLAS--SQLREQPSASSGSILYWSWSKP--Q   72 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~--~~~l~~~~~d~g~i~vw~~~~~--~   72 (451)
                      ..|++|+ ..|.++||+...+.     .+.+.+    -..+|..+. ++|.+.  ...||+-.-  ..+.||.+...  .
T Consensus        38 d~IivGS-~~G~LrIy~P~~~~~~~~~lllE~~----l~~PILqv~~G~F~s~~~~~~LaVLhP--~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   38 DKIIVGS-YSGILRIYDPSGNEFQPEDLLLETQ----LKDPILQVECGKFVSGSEDLQLAVLHP--RKLSVYSVSLVDGT  110 (418)
T ss_pred             cEEEEec-cccEEEEEccCCCCCCCccEEEEEe----cCCcEEEEEeccccCCCCcceEEEecC--CEEEEEEEEecCCC
Confidence            3678899 99999999985433     121211    123344433 235433  233444333  78888887311  1


Q ss_pred             ------ee--eeecC--CCCeeEEEECC----C-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996           73 ------VE--VKSLP--AEPIKPIAANS----H-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        73 ------~~--~~~~~--~~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                            ..  ....|  ......+++-|    . ..++++=+.||.+.+|+-+.-.....+.. .--...+.|.+....|
T Consensus       111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF  189 (418)
T ss_pred             cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence                  11  11112  23333444322    2 35778889999999999655443344433 2233457888888889


Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhc------------ccccceecccCCcCceeEEEEeecC-CeeEEEEeeCCCcEEEE
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQR------------ASHLYLHSFTGHTLRITDIVIGYGG-VSATIVSASEDRTCKVW  204 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~l~s~~~d~~i~iw  204 (451)
                      ++++.+..+..|.............            ....+.-++. -...+.++...... ....++.-+ ...+.+.
T Consensus       190 vt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l  267 (418)
T PF14727_consen  190 VTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCL  267 (418)
T ss_pred             EEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEE
Confidence            9999999999998744322111000            0000111111 12233333332211 112333332 3456666


Q ss_pred             EcCCCceeeeeecccceeEEEE-------CCC-CCEEEEEeCCCcEEEEEcc
Q 012996          205 SLLKGRLLRNIVFPSVIDAIAL-------DPA-EHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       205 d~~~~~~~~~~~~~~~i~~~~~-------~~~-~~~l~~~~~dg~i~i~d~~  248 (451)
                      +- +|........+....+++.       .|. +..+++++.++.+.+|.=.
T Consensus       268 ~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~  318 (418)
T PF14727_consen  268 KD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT  318 (418)
T ss_pred             cC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC
Confidence            64 5665555555544444431       122 1258889999999998643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.37  E-value=0.071  Score=45.19  Aligned_cols=183  Identities=16%  Similarity=0.108  Sum_probs=113.2

Q ss_pred             CeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          124 AVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ....+.|..++.++-+.+.-|  .|+.+|+.++..         .....+. ...--.+++...+   .+....-.++..
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~---------~~~~~l~-~~~FgEGit~~~d---~l~qLTWk~~~~  112 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV---------LQSVPLP-PRYFGEGITILGD---KLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE---------EEEEE-T-TT--EEEEEEETT---EEEEEESSSSEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE---------EEEEECC-ccccceeEEEECC---EEEEEEecCCeE
Confidence            345688877888888888776  688899866321         1111111 1222234444433   566666788999


Q ss_pred             EEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC---cceeEEEEe
Q 012996          202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS---KAVTCLAYS  278 (451)
Q Consensus       202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~  278 (451)
                      .+||..+.+.+.++..+..-..++  .++..|+.+.....++++|..+....      ..+ ......   ..++-+.|-
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~------~~i-~V~~~g~pv~~LNELE~i  183 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV------RTI-QVTDNGRPVSNLNELEYI  183 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE------EEE-E-EETTEE---EEEEEEE
T ss_pred             EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceE------EEE-EEEECCEECCCcEeEEEE
Confidence            999999999999999888778888  46778888888889999998764311      111 111222   245556776


Q ss_pred             cCCEEEEEcCCCcEEEEeCCCCceEEEeec------------C---CCCeeEEEEEecCcee-eec
Q 012996          279 TGDLLISGSEDGMVRVWDPITHNIVRMFRL------------A---KGPVNNILVVRRPLYL-NLG  328 (451)
Q Consensus       279 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~l~~s~~~~~l-~~~  328 (451)
                      .|...|=.=....|...|..+|+.+..+..            +   ..-.+.|++.|....| +||
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            566666666677788899999998887641            0   2358999999866555 554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.00086  Score=65.94  Aligned_cols=100  Identities=20%  Similarity=0.333  Sum_probs=77.3

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      .+..++.|++.|.+...|+...-        .+...-..-.++|++++|+. |..++.|-.+|.|.+||...++.++.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL--------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNL--------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhccc--------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            56678999999999999987742        22223333468999999999 9999999999999999999999999999


Q ss_pred             cCCCCeeEEEEE---ecCceeeeccCCCCccccc
Q 012996          308 LAKGPVNNILVV---RRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       308 ~~~~~v~~l~~s---~~~~~l~~~s~d~~i~iw~  338 (451)
                      .|..|.+++-+.   .++..+.++..-|.  +|+
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            888877776654   45556677665564  454

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.29  E-value=0.021  Score=55.41  Aligned_cols=190  Identities=12%  Similarity=0.069  Sum_probs=101.5

Q ss_pred             ceEEecceEeeccCcccCCCC-----CCc--cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---------
Q 012996           38 GLACVGQRFLASSQLREQPSA-----SSG--SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---------  101 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~-----d~g--~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  101 (451)
                      .+...+  ++|+|+.+|....     +++  .|.+++.........  .......-.|+|+|..+++....         
T Consensus       351 ~vsspa--iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt--~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        351 NITSAA--LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL--EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             Ccccce--ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee--cCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            445555  8999998877652     123  455555433332222  23348888999998877765422         


Q ss_pred             ---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc-cCCcCc
Q 012996          102 ---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLR  177 (451)
Q Consensus       102 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~  177 (451)
                         +.+.+.++..++...   ...+.|..+.|+|||..++... +|.|.+--+.......    ........+ ..-...
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~----~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ----YALTNPREVGPGLGDT  498 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc----eeecccEEeecccCCc
Confidence               233333444433322   2356799999999999888765 4677773332210000    000001112 222333


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEE
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (451)
                      +.++.|..++  . |+++..++...+|.+.- |.....+.   ....+.+++-++  ..+++...+|.+.+
T Consensus       499 ~~~l~W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l  564 (591)
T PRK13616        499 AVSLDWRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL  564 (591)
T ss_pred             cccceEecCC--E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence            5778898887  5 44555544444454331 22211112   245566676665  35666677774444

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.28  E-value=0.047  Score=44.62  Aligned_cols=196  Identities=12%  Similarity=0.124  Sum_probs=109.2

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCC--cEEEEeccC-CCEEEEEcC--CCcceeeec-----cccCCeeEEEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHG--TYIAGGGQS-GDIYMWEVA--SGRLLKKWH-----AHYRAVTCLVF  130 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d-g~i~iwd~~--~~~~~~~~~-----~~~~~v~~~~~  130 (451)
                      |.|+-||..+++.........++.++.+--.+  ..+++++.. -.|.=||..  .-....++.     ......+.-..
T Consensus        37 g~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkv  116 (310)
T KOG4499|consen   37 GEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKV  116 (310)
T ss_pred             CceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCcc
Confidence            77777998877665444444444555543222  223333322 224446632  222223321     11345567778


Q ss_pred             ccCCcEEEEeeCC---------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          131 SEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       131 ~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      +|+|++++-.-.|         |.++.|-...             .+..+...-+--+.++|+.+.. .+.++-+.+-.|
T Consensus       117 dP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------------~v~~i~~~v~IsNgl~Wd~d~K-~fY~iDsln~~V  182 (310)
T KOG4499|consen  117 DPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------------QVELIWNCVGISNGLAWDSDAK-KFYYIDSLNYEV  182 (310)
T ss_pred             CCCCceeeeeeccccccccccccEEEEeccCC-------------CceeeehhccCCccccccccCc-EEEEEccCceEE
Confidence            8999985432222         3344443311             1111111222335677876553 555667777788


Q ss_pred             EEEE--cCCCce-----eeeeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          202 KVWS--LLKGRL-----LRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       202 ~iwd--~~~~~~-----~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      .-||  ..+|..     +..+..     +-....++++.+|.+.++.-..++|...|..++         +.+.++.-..
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG---------K~L~eiklPt  253 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG---------KILLEIKLPT  253 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC---------cEEEEEEcCC
Confidence            7787  555532     222221     112344666778888888888999999999998         4566666678


Q ss_pred             cceeEEEEec
Q 012996          270 KAVTCLAYST  279 (451)
Q Consensus       270 ~~v~~~~~~~  279 (451)
                      ..|++++|--
T Consensus       254 ~qitsccFgG  263 (310)
T KOG4499|consen  254 PQITSCCFGG  263 (310)
T ss_pred             CceEEEEecC
Confidence            8999999975

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0059  Score=55.64  Aligned_cols=143  Identities=13%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             CCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-------EEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           91 HGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-------LISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        91 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      +.++| ..+.....++-.|++.|+.+..++-|.. |+-+.+.|+.+.       -+.|-.|..|.-||.+-.        
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--------  414 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--------  414 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc--------
Confidence            44444 4555556788899999999999987776 777788876432       345667889999998631        


Q ss_pred             ccccceecccCC----cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCCEEEEE
Q 012996          163 ASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       163 ~~~~~~~~~~~~----~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~  236 (451)
                       ....+..-.+|    ...-.|++-..+   .++++|+.+|.|++||- .+.. ...++ ...+|..+..+.+|+++++.
T Consensus       415 -~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T  489 (644)
T KOG2395|consen  415 -GKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT  489 (644)
T ss_pred             -CcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe
Confidence             11111111222    223344444444   49999999999999996 4433 33344 67899999999999998876


Q ss_pred             eCCCcEEEEEcc
Q 012996          237 SRDGSIYIAALN  248 (451)
Q Consensus       237 ~~dg~i~i~d~~  248 (451)
                      +. ..+.+.++.
T Consensus       490 c~-tyLlLi~t~  500 (644)
T KOG2395|consen  490 CK-TYLLLIDTL  500 (644)
T ss_pred             cc-cEEEEEEEe
Confidence            64 455555553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.21  E-value=0.23  Score=47.91  Aligned_cols=150  Identities=9%  Similarity=0.088  Sum_probs=88.6

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeeec
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~~   78 (451)
                      .++.++ .|+.|.-.|..+|+.+......... ...+.+..  ...++..++..+.    .+|.|.-+|.++++......
T Consensus       122 ~v~v~t-~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP--~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       122 KVFFGT-LDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP--LVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             EEEEEc-CCCEEEEEECCCCCEEeecccccccccccccCCc--EEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            355666 7899999999999998776532111 11122222  2233443332221    13889999998888765532


Q ss_pred             C--CC------------------------------Ce-eEEEECCCCcEEEEeccC-----C-----------CEEEEEc
Q 012996           79 P--AE------------------------------PI-KPIAANSHGTYIAGGGQS-----G-----------DIYMWEV  109 (451)
Q Consensus        79 ~--~~------------------------------~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~  109 (451)
                      .  ..                              .+ ..+++.|...++..+..+     +           .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            1  10                              11 133566666666655422     2           5777788


Q ss_pred             CCCcceeeeccccCCe---------eEEEEccCCc---EEEEeeCCCcEEEeeCcchhh
Q 012996          110 ASGRLLKKWHAHYRAV---------TCLVFSEDGS---FLISGSEDGCVRIWSLLTVFE  156 (451)
Q Consensus       110 ~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~  156 (451)
                      ++|+....++.....+         .-+....+|+   .++.+..+|.+.+.|-.++..
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            9998887765422211         1222324665   778999999999999988654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.14  E-value=0.049  Score=52.88  Aligned_cols=188  Identities=13%  Similarity=0.109  Sum_probs=99.8

Q ss_pred             CCeeEEEEccCCcEEEEee------CCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          123 RAVTCLVFSEDGSFLISGS------EDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~------~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      ..+...+++|+|+.++...      .|+.  |.+++...          ....+  ..+.  ..+.-.|++++  ..+++
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------~~~~l--t~g~--~~t~PsWspDG--~~lw~  413 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------VAVQV--LEGH--SLTRPSWSLDA--DAVWV  413 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------cceee--ecCC--CCCCceECCCC--CceEE
Confidence            4678899999999887655      2443  44444311          11111  1222  25666788876  45554


Q ss_pred             eeC------------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEc---cCCCCCCCCCCc
Q 012996          195 ASE------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL---NAESPSTSSYGM  259 (451)
Q Consensus       195 ~~~------------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~~  259 (451)
                      ...            .+.+.+.++..+....  .....|..+.|+|||..++... +|.|++--+   ..+.  ....  
T Consensus       414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~--  486 (591)
T PRK13616        414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALT--  486 (591)
T ss_pred             EecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeec--
Confidence            432            2334444554444332  3456799999999999988766 477777332   2221  0000  


Q ss_pred             eeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC-CceEEEeec--CCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          260 HIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT-HNIVRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                      .+.....+-...+.++.|.++..|+++..++.-.+|.+.- |.....+..  ...++..++-++.  .+..+..+|.+.
T Consensus       487 ~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        487 NPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            1111112233446889999944455666555555555432 222222222  2457777777763  344444455433

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.14  E-value=0.18  Score=45.30  Aligned_cols=227  Identities=11%  Similarity=0.041  Sum_probs=108.3

Q ss_pred             EECCCCcEEEEe-ccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           87 AANSHGTYIAGG-GQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        87 ~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      +|.++|+.|+.+ ..+|  .+++.|+.+++..+.-.+.........++|+++.++-......|.-.|+.+..        
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e--------  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE--------  113 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT----------
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc--------
Confidence            467888665544 4454  47778888887665544332333356677888887665555688888887632        


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEee----------------------CCCcEEEEEcCCCceeeeeecccce
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS----------------------EDRTCKVWSLLKGRLLRNIVFPSVI  221 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~----------------------~d~~i~iwd~~~~~~~~~~~~~~~i  221 (451)
                       ...+.  ......+-...|..+.++..++-.-                      ....|.-.|+.+|+....+.....+
T Consensus       114 -~~~vy--~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl  190 (386)
T PF14583_consen  114 -ERVVY--EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL  190 (386)
T ss_dssp             -EEEEE--E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred             -EEEEE--ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence             11222  2233334334554443334433211                      1235666788888877777777788


Q ss_pred             eEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-----cCCC
Q 012996          222 DAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-----SEDG  290 (451)
Q Consensus       222 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-----~~dg  290 (451)
                      ..+.|+|....+++=|.+|     .-++|-++......     .++..-. ....+..=.|.| |..|.--     +.+.
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-----~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~  264 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-----KKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDF  264 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-----eeeecCC-CCcccccccccCCCCEEEEEeecCCCCce
Confidence            8999999665555544333     23566665433111     2221111 123344455677 5544332     2344


Q ss_pred             cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      .|.-+|+.+++.......  .+...+..++||.+++-=+.|.
T Consensus       265 ~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~  304 (386)
T PF14583_consen  265 WIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDA  304 (386)
T ss_dssp             EEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE---
T ss_pred             EEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCC
Confidence            577788888765433332  2455677778998887644443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.10  E-value=0.14  Score=43.44  Aligned_cols=180  Identities=13%  Similarity=0.088  Sum_probs=104.6

Q ss_pred             EeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCCe--eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc
Q 012996           46 FLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY  122 (451)
Q Consensus        46 ~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  122 (451)
                      |..+|.++-++|.- ...|+.+|+.+++......-....  ..++... +++....-.++...+||..+.+.+.++.- .
T Consensus        52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~  129 (264)
T PF05096_consen   52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-P  129 (264)
T ss_dssp             EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE--S
T ss_pred             ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEEec-C
Confidence            76778887777765 148999999998876443322222  2333333 34444446788999999999888888753 3


Q ss_pred             CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~  202 (451)
                      +.=+.++  .|++.|+.......+.++|..+.....      ...+..-...-..++.+.+. +|  ...+=.-....|.
T Consensus       130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~------~i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~  198 (264)
T PF05096_consen  130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR------TIQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIV  198 (264)
T ss_dssp             SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE------EEE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEE
T ss_pred             CcceEEE--cCCCEEEEECCccceEEECCcccceEE------EEEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEE
Confidence            4556777  456667766666789999986522110      00011000111234445554 33  4555555667788


Q ss_pred             EEEcCCCceeeeeec----------------ccceeEEEECCCCCEEEEEeC
Q 012996          203 VWSLLKGRLLRNIVF----------------PSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       203 iwd~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~  238 (451)
                      ..|..+|+....+..                ..-.+.++++|..+.|++.+.
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            889999888776631                235789999997766665553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.10  E-value=0.12  Score=42.43  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             cceeEEEECCCCCEEEEE-eCCCcEEEEE--ccCCCCCCCCCCceeeeeecc----CCcceeEEEEec-CCEEEEEcCCC
Q 012996          219 SVIDAIALDPAEHVFYAG-SRDGSIYIAA--LNAESPSTSSYGMHIIGSLSD----HSKAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      .--+.++|+.+.+.++.. +.+-.|.-||  ..++.....    ..+..++.    .....-.++... |.+.++.-..|
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr----~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~  233 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR----KVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG  233 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCc----ceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence            344678999877776654 5566786677  555443222    11212211    112233455556 88888888899


Q ss_pred             cEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      +|...|..+|+.+.++......|++++|--.
T Consensus       234 ~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  234 TVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            9999999999999999999999999999743

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.011  Score=58.92  Aligned_cols=155  Identities=13%  Similarity=0.044  Sum_probs=94.5

Q ss_pred             CeeEEEEccCCcEEE--EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          124 AVTCLVFSEDGSFLI--SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ++..+...+|+...+  ..+.+-.|..||+++..............-...........++.|.|.-. ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            555666667765543  33444478999997754333222111111122223344456677777654 445667788888


Q ss_pred             EEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEec
Q 012996          202 KVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST  279 (451)
Q Consensus       202 ~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~  279 (451)
                      ++..+... .....+......++++|+|.|+.+++|-..|++..|...-.....       +.... .....|.+|+|-.
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-------ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-------IPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec-------ccCCCcCCCcceeEEEEec
Confidence            88876533 233445667789999999999999999999999999765542100       00000 1147889999987


Q ss_pred             -CCEEEEE
Q 012996          280 -GDLLISG  286 (451)
Q Consensus       280 -~~~l~s~  286 (451)
                       ..++++-
T Consensus       254 t~eflvvy  261 (1405)
T KOG3630|consen  254 TQEFLVVY  261 (1405)
T ss_pred             ceeEEEEe
Confidence             5555543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.04  E-value=0.073  Score=44.95  Aligned_cols=235  Identities=14%  Similarity=0.119  Sum_probs=124.8

Q ss_pred             EeeccCccc-CCCCCCccEEEEECCCCceeeeecCCC---CeeEEEECCCCcEEEEecc-----CCCEEEEEcCCC-cce
Q 012996           46 FLASSQLRE-QPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASG-RLL  115 (451)
Q Consensus        46 ~~~~~~~l~-~~~~d~g~i~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~-~~~  115 (451)
                      |+|....-+ .+-.-+-...++|.+..+........+   -.-.=.|||||.+|...-.     -|.|-|||.+.+ ..+
T Consensus        75 ~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv  154 (366)
T COG3490          75 FHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV  154 (366)
T ss_pred             cCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccccee
Confidence            666554433 232332456788887766543332111   1112358999999987533     377999998754 456


Q ss_pred             eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe-eCcchhhhhhhhccccc----------ceeccc--CCcCceeEEE
Q 012996          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW-SLLTVFEECESQRASHL----------YLHSFT--GHTLRITDIV  182 (451)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~i~~i~  182 (451)
                      ..+..|.-....+.|.+||+.++.+.  |-|... |....+.....-.++..          ..+++.  .+...|..++
T Consensus       155 gE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld  232 (366)
T COG3490         155 GEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLD  232 (366)
T ss_pred             cccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeee
Confidence            67788887888999999999988763  445544 22111110000000111          111222  3455677777


Q ss_pred             EeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee--------cccceeEEEECCCCCEEEEEeC-CCcEEEEEcc
Q 012996          183 IGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALN  248 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  248 (451)
                      ...++  ..++.+-..|     --.+=-...++.+.-+.        ....|-+++.+.+..+++..+- .+...+||..
T Consensus       233 ~g~dg--tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         233 IGRDG--TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             eCCCC--cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence            76665  3333332222     11111122344444333        2346778888876666655554 4567799999


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEe
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD  296 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd  296 (451)
                      ++..         +...  --.....++-. ..-++..+.+|.+.++.
T Consensus       311 tG~v---------v~~a--~l~daaGva~~-~~gf~vssg~G~~~~~s  346 (366)
T COG3490         311 TGAV---------VSEA--ALPDAAGVAAA-KGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             CCcE---------Eecc--cccccccceec-cCceEEecCCceEEecc
Confidence            8752         1110  01112222222 34456667788888874

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.04  E-value=0.14  Score=47.06  Aligned_cols=82  Identities=16%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce-----------------eEEEEec--
Q 012996          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV-----------------TCLAYST--  279 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~--  279 (451)
                      ..+.+++.+|.+++.++...-|+|.++|+......         ...+|-...=                 ....-.+  
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv---------rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV---------RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh---------hhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            35789999999999999888899999999886432         1222211100                 0000001  


Q ss_pred             C-CEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          280 G-DLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       280 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      . -+++-+-.-|.|.||.+++|..+..+...
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            1 12334566899999999999999887653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.00  E-value=0.003  Score=37.66  Aligned_cols=35  Identities=11%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  114 (451)
                      ....|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3567999999999999999999999999998 5543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.98  E-value=0.2  Score=43.05  Aligned_cols=223  Identities=15%  Similarity=0.125  Sum_probs=127.2

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcC------CC-cceeeecc-----ccCCeeEEEEccCCc------------EE
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVA------SG-RLLKKWHA-----HYRAVTCLVFSEDGS------------FL  137 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l  137 (451)
                      .-..|+++|.+.+-++....+...+||..      .. .++.++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999888887778899999986      11 22333331     234577788875332            26


Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhcccccceeccc-C-CcCceeEEEEeecCCeeEEEEe-eCCCcEEEEEcCCCceee-
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-G-HTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLR-  213 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~i~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~-  213 (451)
                      +.+++||+|.-|...-....     .. .....+. . ....-..+++...+.+.+|+.+ -..++|.+||-.-.+... 
T Consensus       104 if~tEdGTisaW~p~v~~t~-----~~-~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~  177 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTR-----MT-RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP  177 (336)
T ss_pred             EEEeCCceEEeecCcCCccc-----cc-ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC
Confidence            77889999999985321000     00 0111111 1 1223345666654333455544 467889999854322110 


Q ss_pred             -eeecc--------ccee---------EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee--ccCCccee
Q 012996          214 -NIVFP--------SVID---------AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVT  273 (451)
Q Consensus       214 -~~~~~--------~~i~---------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~  273 (451)
                       .+..+        -.|.         -..-.++...=+.|..-|.|-+||+...          .++++  .+.-...+
T Consensus       178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNaPW  247 (336)
T TIGR03118       178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNAPW  247 (336)
T ss_pred             CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccCCc
Confidence             11100        0111         1111222222233444568888888763          34433  22334556


Q ss_pred             EEEEec-------CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC------CeeEEEEEe
Q 012996          274 CLAYST-------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVR  320 (451)
Q Consensus       274 ~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~  320 (451)
                      .|+..|       +.+|+---.||+|..||..+++.+..+....+      .++.|.|-.
T Consensus       248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            677655       45666666799999999999998888876544      467788765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.17  Score=43.12  Aligned_cols=168  Identities=7%  Similarity=0.113  Sum_probs=110.6

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      ...+.++.|+|+.+.|++......-.|+=...|+.+.++.-. -...-.|.+..++++.++--.++.+.++.+.......
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            345999999999999988888888888877889998877421 2344578888888888887788888888775432211


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------cccceeEEEEC
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------FPSVIDAIALD  227 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~i~~~~~~  227 (451)
                      ..... ...+...........+++|.+..  ..|+.+-.-.-+.||............           .-..+.++.|+
T Consensus       165 ~~~~~-~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         165 SAKVQ-KIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             eccce-EEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            11111 11122222225567789999887  677777777777777765332111110           12356778888


Q ss_pred             C-CCCEEEEEeCCCcEEEEEccCC
Q 012996          228 P-AEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       228 ~-~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      + .+..++.+..++.+.-.|....
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCCC
Confidence            7 5566666777777877777664

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.89  E-value=0.0054  Score=36.56  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             eecccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          215 IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      ...+..|.+++|+|..+++|.++.+|.|.+|.++.
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            34567799999999999999999999999999843

>PHA02790 Kelch-like protein; Provisional

Probab=96.82  E-value=0.16  Score=48.46  Aligned_cols=183  Identities=11%  Similarity=0.063  Sum_probs=86.4

Q ss_pred             CCcEEEEeccCC-----CEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhh
Q 012996           91 HGTYIAGGGQSG-----DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQ  161 (451)
Q Consensus        91 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~  161 (451)
                      ++.++++|+.++     .+..||..+++-..  .+.........+  .-++...+.||.++  .+..||..+        
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~--------  340 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGD--------  340 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCC--------
Confidence            456667777543     46778877654322  222111122222  23577777887643  467777643        


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCCCceeeeeec--ccceeEEEECCCCCEEEEE
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~  236 (451)
                       .....+..+...... .++ ...++  .+.+.|+.++   .+..||..+.+-...-..  +..-.+++ .-++.+.+.|
T Consensus       341 -n~W~~~~~l~~~r~~-~~~-~~~~g--~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G  414 (480)
T PHA02790        341 -AAWVNMPSLLKPRCN-PAV-ASINN--VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG  414 (480)
T ss_pred             -CeEEECCCCCCCCcc-cEE-EEECC--EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC
Confidence             122222222211111 111 22344  6667777553   477888876644332111  11111221 2245555555


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCCCC
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH  300 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  300 (451)
                         |.+.+||..+..       |..+..+....... +++...+...+.||.+     ..+..||..+.
T Consensus       415 ---G~~e~ydp~~~~-------W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        415 ---RNAEFYCESSNT-------WTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ---CceEEecCCCCc-------EeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence               356778876543       33333332222222 2333337777777754     24666666544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.27  Score=44.56  Aligned_cols=151  Identities=10%  Similarity=0.088  Sum_probs=92.5

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCc--ee--eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce----ee
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQ--VE--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL----KK  117 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~  117 (451)
                      |..|.+..+.+... |.+.-|-+....  +.  ......++|.++.||+|.+.||+--.+..|.+++....+..    .+
T Consensus        29 FfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~  107 (657)
T KOG2377|consen   29 FFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE  107 (657)
T ss_pred             eeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence            44444443333333 667777665433  22  22335679999999999999999999999999997544332    22


Q ss_pred             eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996          118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE  197 (451)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~  197 (451)
                      .+.....|....|+.+ .-++..+.. -+-+|....          ....++....|...|.-..|+++..--+++++-.
T Consensus       108 ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~p----------ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~  175 (657)
T KOG2377|consen  108 CKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLP----------EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVL  175 (657)
T ss_pred             hccCcceeEEEEEecC-eeEEEEecC-CeEEEEEch----------hhhhhhhhhhcccCccEEEEccccceEeeecccc
Confidence            3444566899999865 445555544 366666532          2334555667888888888888763122223324


Q ss_pred             CCcEEEEEcCCC
Q 012996          198 DRTCKVWSLLKG  209 (451)
Q Consensus       198 d~~i~iwd~~~~  209 (451)
                      .+++.=+.++++
T Consensus       176 ~n~lnpf~~~~~  187 (657)
T KOG2377|consen  176 ENVLNPFHFRAG  187 (657)
T ss_pred             ccccccEEEeec
Confidence            455555555544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.72  E-value=0.33  Score=41.84  Aligned_cols=154  Identities=14%  Similarity=0.019  Sum_probs=91.9

Q ss_pred             ceEEecceEeeccCcccCCC--CCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEE-cCCCcc
Q 012996           38 GLACVGQRFLASSQLREQPS--ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE-VASGRL  114 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~--~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~  114 (451)
                      .+...+  .+++++.+|...  .+...+.++..........  ....+..-.|++++...++...+....++. ..++..
T Consensus        25 ~~~s~A--vS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPA--VSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceE--ECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            566667  999999887766  3335666665544333332  445788889999988777766666666664 333332


Q ss_pred             ee-eecc--ccCCeeEEEEccCCcEEEEee---CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996          115 LK-KWHA--HYRAVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (451)
Q Consensus       115 ~~-~~~~--~~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (451)
                      .. ....  -.+.|..+.++|||..++...   .++.|.+--+........  ................+.++.|..+. 
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~--~~l~~~~~~~~~~~~~v~~v~W~~~~-  177 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP--RRLTGPRRVAPPLLSDVTDVAWSDDS-  177 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc--ceeccceEecccccCcceeeeecCCC-
Confidence            21 1211  122899999999999877655   357777776643211100  00111222222345688899999887 


Q ss_pred             eeEEEEeeCCC
Q 012996          189 SATIVSASEDR  199 (451)
Q Consensus       189 ~~~l~s~~~d~  199 (451)
                       .+++.+...+
T Consensus       178 -~L~V~~~~~~  187 (253)
T PF10647_consen  178 -TLVVLGRSAG  187 (253)
T ss_pred             -EEEEEeCCCC
Confidence             5555554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=96.72  E-value=0.16  Score=49.51  Aligned_cols=187  Identities=11%  Similarity=0.077  Sum_probs=86.2

Q ss_pred             CCCcEEEEeccCC------CEEEEEcCCCcceee--eccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhh
Q 012996           90 SHGTYIAGGGQSG------DIYMWEVASGRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFE  156 (451)
Q Consensus        90 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~  156 (451)
                      .++..++.|+.++      .+..||..+.+-...  +.........+.  -++..++.||.++     .+..||..+.  
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~--  368 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES--  368 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence            3466677776542      477888776643221  111111222222  2577777777652     4667776541  


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC------CcEEEEEcCCCceeeeeeccc--ceeEEEECC
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIVFPS--VIDAIALDP  228 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~  228 (451)
                             .......+...... .+++ ..++  .+.+.|+.+      ..+..||+.+.+-...-..+.  .-.+++ ..
T Consensus       369 -------~W~~~~~lp~~r~~-~~~~-~~~~--~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~  436 (534)
T PHA03098        369 -------KWREEPPLIFPRYN-PCVV-NVNN--LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YH  436 (534)
T ss_pred             -------ceeeCCCcCcCCcc-ceEE-EECC--EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EE
Confidence                   11111111111111 1112 2233  666666632      457889987764332211111  111222 22


Q ss_pred             CCCEEEEEeCCC--------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEE
Q 012996          229 AEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVW  295 (451)
Q Consensus       229 ~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iw  295 (451)
                      ++..++.|+.++        .+.+||..+..       |..+..+.........+.+ .+.+++.||.+     +.|.+|
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y  508 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-------WTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVY  508 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCc-------eeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEE
Confidence            556666665432        37888887653       2222211111111111222 35666666654     356777


Q ss_pred             eCCCC
Q 012996          296 DPITH  300 (451)
Q Consensus       296 d~~~~  300 (451)
                      |..+.
T Consensus       509 d~~~~  513 (534)
T PHA03098        509 DDKTN  513 (534)
T ss_pred             eCCCC
Confidence            76654

>PHA03098 kelch-like protein; Provisional

Probab=96.60  E-value=0.26  Score=48.00  Aligned_cols=177  Identities=11%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC----ccEEEEECCCCceeeeecC--CCCeeEEE
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLP--AEPIKPIA   87 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~--~~~v~~~~   87 (451)
                      .+..||..+.+.. .+.....+.....+    ...++...+.||.++    ..+..||..+.........  ...-.+++
T Consensus       312 ~v~~yd~~~~~W~-~~~~~~~~R~~~~~----~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~  386 (534)
T PHA03098        312 SVVSYDTKTKSWN-KVPELIYPRKNPGV----TVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV  386 (534)
T ss_pred             cEEEEeCCCCeee-ECCCCCcccccceE----EEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE
Confidence            4678887776553 22211111111111    233566667776541    3577888776654332211  11111222


Q ss_pred             ECCCCcEEEEeccC------CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCC--------cEEEeeC
Q 012996           88 ANSHGTYIAGGGQS------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--------CVRIWSL  151 (451)
Q Consensus        88 ~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg--------~i~vwd~  151 (451)
                       .-++++.+.||.+      ..+..||..+++-..  .+....... ++. ..++..++.||.++        .+.+||.
T Consensus       387 -~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  463 (534)
T PHA03098        387 -NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNP  463 (534)
T ss_pred             -EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecC
Confidence             2356777777632      358889987653221  111111111 222 23566667776432        3778887


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCce
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRL  211 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~  211 (451)
                      .+.         ....+......... .+++. .++  .+++.|+.+     ..+.+||..+.+-
T Consensus       464 ~~~---------~W~~~~~~~~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        464 VTN---------KWTELSSLNFPRIN-ASLCI-FNN--KIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCC---------ceeeCCCCCccccc-ceEEE-ECC--EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            552         22222111111111 11222 233  666666654     4677888776543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.59  E-value=0.56  Score=42.77  Aligned_cols=229  Identities=16%  Similarity=0.154  Sum_probs=100.6

Q ss_pred             CCcEEEEec-cCCCEEEEEcCCC----cceeeecc---cc----CCeeEEEEccCCcEEEEeeC------CCcEEEeeCc
Q 012996           91 HGTYIAGGG-QSGDIYMWEVASG----RLLKKWHA---HY----RAVTCLVFSEDGSFLISGSE------DGCVRIWSLL  152 (451)
Q Consensus        91 ~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~  152 (451)
                      +.++|++.+ ..+.|+|.|+.+.    ++.+++..   +.    .....+..-|+|+.++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456776665 6788999999743    33344322   11    22234445578888887533      2457777764


Q ss_pred             chhhhhhhhcccccceecccC---CcCceeEEEEeecCCeeEEEEeeC--------------------CCcEEEEEcCCC
Q 012996          153 TVFEECESQRASHLYLHSFTG---HTLRITDIVIGYGGVSATIVSASE--------------------DRTCKVWSLLKG  209 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~~l~s~~~--------------------d~~i~iwd~~~~  209 (451)
                      +..           .......   ....-+++-+.|..  +.++|+..                    ..++.+||+.+.
T Consensus       166 tf~-----------v~g~We~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r  232 (461)
T PF05694_consen  166 TFE-----------VKGRWEKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR  232 (461)
T ss_dssp             T-------------EEEE--SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred             ccc-----------ccceeccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence            321           1111111   11223344455544  56666543                    458999999999


Q ss_pred             ceeeeeecc---cceeEEEE--CCCCCEEEEEe-CCCcEEEEEc-cCCCCCCCCCCceeeeee-----------------
Q 012996          210 RLLRNIVFP---SVIDAIAL--DPAEHVFYAGS-RDGSIYIAAL-NAESPSTSSYGMHIIGSL-----------------  265 (451)
Q Consensus       210 ~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~-~dg~i~i~d~-~~~~~~~~~~~~~~~~~~-----------------  265 (451)
                      +.++++...   .....+.|  .|+..+=++|+ -...|..|-- ..+.     ...+.+..+                 
T Consensus       233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-----W~a~kVi~ip~~~v~~~~lp~ml~~~  307 (461)
T PF05694_consen  233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-----WAAEKVIDIPAKKVEGWILPEMLKPF  307 (461)
T ss_dssp             EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-----EEEEEEEEE--EE--SS---GGGGGG
T ss_pred             cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-----eeeeEEEECCCcccCccccccccccc
Confidence            999999854   23444554  55555544443 3344444433 2221     001111111                 


Q ss_pred             ccCCcceeEEEEec-CCEEEEEc-CCCcEEEEeCCCC---ceEEEeecC----------------CCCeeEEEEEecCce
Q 012996          266 SDHSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITH---NIVRMFRLA----------------KGPVNNILVVRRPLY  324 (451)
Q Consensus       266 ~~~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~---~~~~~~~~~----------------~~~v~~l~~s~~~~~  324 (451)
                      ..-..-|+.|..|. .++|..++ .+|.|+.||+.+.   +++.++..-                .+...-+..|.||+.
T Consensus       308 ~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkR  387 (461)
T PF05694_consen  308 GAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKR  387 (461)
T ss_dssp             -EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSE
T ss_pred             ccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeE
Confidence            11135678999999 77776665 5999999999764   333333210                123467888999988


Q ss_pred             eeeccCCCCcccccc
Q 012996          325 LNLGSFSNPHTSSRR  339 (451)
Q Consensus       325 l~~~s~d~~i~iw~~  339 (451)
                      |...+  .-..-||-
T Consensus       388 lYvTn--SLys~WD~  400 (461)
T PF05694_consen  388 LYVTN--SLYSAWDK  400 (461)
T ss_dssp             EEEE------HHHHH
T ss_pred             EEEEe--eccccccc
Confidence            86542  23344553

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.51  Score=45.68  Aligned_cols=176  Identities=9%  Similarity=0.089  Sum_probs=89.4

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee----ccccCCeeEEEEccCCcE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSF  136 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~  136 (451)
                      -.|+|++..........-....+..+.|+.+..+|+ ...+|.++||++. |+.+...    ......|..+.|..+|-.
T Consensus        64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELIC-VQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEeccccchHHHHhcCCCeeeecccCCceEEE-EeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE
Confidence            568888876544333222334888999998776554 5899999999974 3333321    223344666666656644


Q ss_pred             EEEeeCCCcEEE-eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe-eEEEEee-CCCcEEEEEcCCC-cee
Q 012996          137 LISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSAS-EDRTCKVWSLLKG-RLL  212 (451)
Q Consensus       137 l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~~-~d~~i~iwd~~~~-~~~  212 (451)
                      +++.  +|.+.+ -+......         ...........+-.+-...+++.. ..++-.. ..+ ..++..... ...
T Consensus       142 vlt~--~g~v~~i~~~~~~~~---------~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  142 VLTV--SGQVILINGVEEPKL---------RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL  209 (829)
T ss_pred             EEec--CCcEEEEcCCCcchh---------hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence            4444  444443 33322100         000011111111122222222110 1111111 000 011111111 111


Q ss_pred             eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          213 RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       213 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      ..+. ..+.+..+.+||+.++|+.-+..|.|.+-+.+..
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            2222 2367888999999999999999999999887764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.56  E-value=0.8  Score=46.11  Aligned_cols=207  Identities=12%  Similarity=0.065  Sum_probs=109.8

Q ss_pred             CcEEEEeccCCCEEEEEcCCCcceeeeccccC--------CeeEEEEcc----------------CCcEEEEeeCCCcEE
Q 012996           92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR--------AVTCLVFSE----------------DGSFLISGSEDGCVR  147 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~s~~~dg~i~  147 (451)
                      +..+.+++.++.|.-.|..+|+.+..+.....        ....+.+..                ++..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55666778888999999999998877643221        112233321                234788888899999


Q ss_pred             EeeCcchhhhhhhhccccccee-cccCCcC---ceeEEEEeecCCeeEEEEeeC----------CCcEEEEEcCCCceee
Q 012996          148 IWSLLTVFEECESQRASHLYLH-SFTGHTL---RITDIVIGYGGVSATIVSASE----------DRTCKVWSLLKGRLLR  213 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~---~i~~i~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~  213 (451)
                      -.|.+++............... .+.....   .+++--.-.+   ..++.|+.          +|.|+-+|..+|+.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~---g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG---TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC---CEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            9998775433221110000000 0000000   0111111112   35555542          6889999999999988


Q ss_pred             eeeccc------------------ce-eEEEECCCCCEEEEEeCCC------------------cEEEEEccCCCCCCCC
Q 012996          214 NIVFPS------------------VI-DAIALDPAEHVFYAGSRDG------------------SIYIAALNAESPSTSS  256 (451)
Q Consensus       214 ~~~~~~------------------~i-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~  256 (451)
                      .+....                  .+ ...+++|....++.+..+.                  .|.-.|.++++...  
T Consensus       351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W--  428 (764)
T TIGR03074       351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW--  428 (764)
T ss_pred             EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE--
Confidence            775210                  00 2345566555665544322                  23333333332110  


Q ss_pred             CCceeeeeeccCC-------cceeEEEEec--C---CEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996          257 YGMHIIGSLSDHS-------KAVTCLAYST--G---DLLISGSEDGMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       257 ~~~~~~~~~~~~~-------~~v~~~~~~~--~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~  308 (451)
                           ......|.       ....-+.+..  +   ..++.++.+|.+.+.|.++|+++...+.
T Consensus       429 -----~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       429 -----VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             -----EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence                 01111111       1111112221  3   2788999999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.55  E-value=0.57  Score=42.30  Aligned_cols=244  Identities=14%  Similarity=0.118  Sum_probs=117.7

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc---eeee----ccccCCeeEEEEccC----CcEEEEeeCC-------
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKW----HAHYRAVTCLVFSED----GSFLISGSED-------  143 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~l~s~~~d-------  143 (451)
                      ..+.|+|.|||+++++ ...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4679999999988776 5589999999 44443   2222    234457789999994    3333333321       


Q ss_pred             -CcEEEeeCcchhhhhhhhcccccceeccc---CCcCceeEEEEeecCCeeEEEEeeCCC-------------cEEEEEc
Q 012996          144 -GCVRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASEDR-------------TCKVWSL  206 (451)
Q Consensus       144 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~~l~s~~~d~-------------~i~iwd~  206 (451)
                       ..|.-|.......  .. ......+....   .....-..|.|.|++  .+.++.+..+             .|.-.+.
T Consensus        81 ~~~v~r~~~~~~~~--~~-~~~~~l~~~~p~~~~~~H~g~~l~fgpDG--~LYvs~G~~~~~~~~~~~~~~~G~ilri~~  155 (331)
T PF07995_consen   81 DNRVVRFTLSDGDG--DL-SSEEVLVTGLPDTSSGNHNGGGLAFGPDG--KLYVSVGDGGNDDNAQDPNSLRGKILRIDP  155 (331)
T ss_dssp             EEEEEEEEEETTSC--EE-EEEEEEEEEEES-CSSSS-EEEEEE-TTS--EEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred             ceeeEEEeccCCcc--cc-ccceEEEEEeCCCCCCCCCCccccCCCCC--cEEEEeCCCCCcccccccccccceEEEecc
Confidence             1333343322100  00 00111111111   122334568899988  5555544432             2333332


Q ss_pred             CCCce-------------eeeee-cccceeEEEECCC-CCEEEEE-eCCCcEEEEEccCCCC----------CC------
Q 012996          207 LKGRL-------------LRNIV-FPSVIDAIALDPA-EHVFYAG-SRDGSIYIAALNAESP----------ST------  254 (451)
Q Consensus       207 ~~~~~-------------~~~~~-~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~----------~~------  254 (451)
                      . ++.             ...+. .-.....++|+|. +.++++= +.++.=.+.-+..+..          ..      
T Consensus       156 d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  156 D-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             T-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             c-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence            1 211             00111 1123567899998 5555432 2222222222222110          00      


Q ss_pred             ----CCCCceeeeeeccCCcceeEEEEec--------CCEEEEEcCCCcEEEEeCCCCceEEE----eecCCCCeeEEEE
Q 012996          255 ----SSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRM----FRLAKGPVNNILV  318 (451)
Q Consensus       255 ----~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~l~~  318 (451)
                          ......+...+..| ..+..+.|..        +.+|++.-..+.|....+..+..+..    +......+..+++
T Consensus       235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~  313 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ  313 (331)
T ss_dssp             TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred             cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence                00011233344444 5667777763        44666666677888888765533322    2233447999999


Q ss_pred             EecCceeeeccCCCCc
Q 012996          319 VRRPLYLNLGSFSNPH  334 (451)
Q Consensus       319 s~~~~~l~~~s~d~~i  334 (451)
                      .|||.+.++.+.+|.|
T Consensus       314 ~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  314 GPDGALYVSDDSDGKI  329 (331)
T ss_dssp             ETTSEEEEEE-TTTTE
T ss_pred             cCCCeEEEEECCCCeE
Confidence            9999998888777765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.49  E-value=0.33  Score=47.46  Aligned_cols=156  Identities=8%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             CcEEEEeeCCCcEEEeeCcchhhhhhhh-----ccc-------ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          134 GSFLISGSEDGCVRIWSLLTVFEECESQ-----RAS-------HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ..+++++. .+.|.||++..........     ...       ........ ....|+-|.+..-+....|+.+..||.|
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V  126 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV  126 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence            55666655 5689999886543311100     000       00011111 3345667766665666899999999999


Q ss_pred             EEEEcCC-------C-------------ceeeeeecccceeEEEEC--CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996          202 KVWSLLK-------G-------------RLLRNIVFPSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (451)
Q Consensus       202 ~iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (451)
                      .+|...+       .             ++...+..+..++.++++  ...+++|+++....|.+|-+.......     
T Consensus       127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~-----  201 (717)
T PF08728_consen  127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF-----  201 (717)
T ss_pred             EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc-----
Confidence            9996521       0             122333456788999998  888999999998888887765531110     


Q ss_pred             eeeeeeccCCcceeEEEEec-C---C---EEEEEcCCCcEEEEeC
Q 012996          260 HIIGSLSDHSKAVTCLAYST-G---D---LLISGSEDGMVRVWDP  297 (451)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~~~-~---~---~l~s~~~dg~i~iwd~  297 (451)
                       ....-..|...|.+|+|-+ .   .   .+++++-.|.+.+|++
T Consensus       202 -~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  202 -YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             -ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence             0111123677899999977 2   2   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.44  E-value=0.71  Score=42.16  Aligned_cols=193  Identities=10%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             eccCcccCCCCCCccEEEEECCCCce--e-eeecC---------CCCeeEEEECCCCcEEEEec------cCCCEEEEEc
Q 012996           48 ASSQLREQPSASSGSILYWSWSKPQV--E-VKSLP---------AEPIKPIAANSHGTYIAGGG------QSGDIYMWEV  109 (451)
Q Consensus        48 ~~~~~l~~~~~d~g~i~vw~~~~~~~--~-~~~~~---------~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~  109 (451)
                      ...++|++.+-.++.|.|.|+.+...  . .+...         -.....+..-|+|+.++++-      .-|.+.++|-
T Consensus        85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred             ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence            35677888887669999999873321  1 11111         12233455568898887752      2245888888


Q ss_pred             CCCcceeeecccc---CCeeEEEEccCCcEEEEee--------------------CCCcEEEeeCcchhhhhhhhccccc
Q 012996          110 ASGRLLKKWHAHY---RAVTCLVFSEDGSFLISGS--------------------EDGCVRIWSLLTVFEECESQRASHL  166 (451)
Q Consensus       110 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~  166 (451)
                      ++.+....+....   ..-..+-|.|..+.++|..                    ...++.+||+.+           ..
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-----------r~  233 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-----------RK  233 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-----------TE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-----------Cc
Confidence            8777777765432   2335677788777777752                    235799999954           34


Q ss_pred             ceecccCC--cCceeEEEEeecCCeeEEEEe-eCCCcEEEEEc-CCCce----eeeee------------------cccc
Q 012996          167 YLHSFTGH--TLRITDIVIGYGGVSATIVSA-SEDRTCKVWSL-LKGRL----LRNIV------------------FPSV  220 (451)
Q Consensus       167 ~~~~~~~~--~~~i~~i~~~~~~~~~~l~s~-~~d~~i~iwd~-~~~~~----~~~~~------------------~~~~  220 (451)
                      .++++.--  ......+.|..++...+-+++ .....|..|-- ..++-    +-.+.                  .+.-
T Consensus       234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L  313 (461)
T PF05694_consen  234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL  313 (461)
T ss_dssp             EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred             EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence            44444322  234556777766544443333 34445554433 33321    11111                  1345


Q ss_pred             eeEEEECCCCCEEEEEe-CCCcEEEEEccCCC
Q 012996          221 IDAIALDPAEHVFYAGS-RDGSIYIAALNAES  251 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  251 (451)
                      |+.+.+|.|.++|++++ ..|.|+.||+....
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            89999999999999876 57899999998864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.38  E-value=0.00089  Score=64.57  Aligned_cols=90  Identities=19%  Similarity=0.337  Sum_probs=59.2

Q ss_pred             ccEEEEECC--CCce----eeee--cCCCCeeEEEECC---CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEE
Q 012996           61 GSILYWSWS--KPQV----EVKS--LPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV  129 (451)
Q Consensus        61 g~i~vw~~~--~~~~----~~~~--~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  129 (451)
                      |.+.||+++  .+++    ....  .-...+.-+.|.|   +..++..+-.++.|++.+...... ..+.+|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            789999986  2222    1111  1233445555544   677888888889988877654432 44566777666554


Q ss_pred             -----------EccCCcEEEEeeCCCcEEEeeC
Q 012996          130 -----------FSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus       130 -----------~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                                 .+|||..|+++..||.++.|.+
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence                       4678888888888888888876

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.34  E-value=0.86  Score=42.12  Aligned_cols=262  Identities=15%  Similarity=0.120  Sum_probs=135.4

Q ss_pred             ccCcccCCCCCCccEEEEECCCCc-----eeeeecCCCCeeEEEECC-----CCcEEEEeccCCCEEEEEcCC--Cc---
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVAS--GR---  113 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~--~~---  113 (451)
                      ....+++|+.. |.++||+.....     .........+|..+..-+     +...||+ -.-..+.||.+..  |.   
T Consensus        36 ~~d~IivGS~~-G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYS-GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccc-cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            34567777777 999999976433     233344567888888632     3345555 4456788888722  11   


Q ss_pred             ----ceeeecccc--CCeeEEEEcc----C-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          114 ----LLKKWHAHY--RAVTCLVFSE----D-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       114 ----~~~~~~~~~--~~v~~~~~~~----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                          .+..+..|.  .....+++-|    . ..++++-+.||.+.+|+-+.           ......+.. -.-...++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----------~~f~~~lp~-~llPgPl~  181 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----------FAFSRFLPD-FLLPGPLC  181 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----------EEEEEEcCC-CCCCcCeE
Confidence                112222232  2223333333    2 36788899999999999743           222222222 22223456


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCC--------------------Cc---eeeeeecccceeEEEE---CCCCCEEEEE
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLK--------------------GR---LLRNIVFPSVIDAIAL---DPAEHVFYAG  236 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~--------------------~~---~~~~~~~~~~i~~~~~---~~~~~~l~~~  236 (451)
                      +.+..  ..+++++.+..+..|....                    ++   +..++.....+..+..   +.....+++-
T Consensus       182 Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL  259 (418)
T PF14727_consen  182 YCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL  259 (418)
T ss_pred             EeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE
Confidence            66666  6888888888888886521                    01   1122333344444433   2222233322


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce--eEEE--Eec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV--TCLA--YST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~--~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                      + ...+.+.+-...        ......+.......  +.+.  ..+  ...++.++.++++.||.=  .+++...+...
T Consensus       260 g-er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~  328 (418)
T PF14727_consen  260 G-ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPH  328 (418)
T ss_pred             e-cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCC
Confidence            2 234444444321        12222332211111  1111  112  125888999999999963  33444433333


Q ss_pred             CCeeEEE---EEecCceeeeccCCCCccccc
Q 012996          311 GPVNNIL---VVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       311 ~~v~~l~---~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      .|| ++.   |..-...|++-+.+|.+.+-=
T Consensus       329 ~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~Y  358 (418)
T PF14727_consen  329 VPV-ALSVANFNGLKGLIVSLSDEGQLSVSY  358 (418)
T ss_pred             CCE-EEEecccCCCCceEEEEcCCCcEEEEE
Confidence            343 232   223345777777788877643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.25  E-value=0.98  Score=45.49  Aligned_cols=115  Identities=15%  Similarity=0.240  Sum_probs=69.6

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCC---ceEEecceEe----------------eccCcccCCCCCCccE
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPH---GLACVGQRFL----------------ASSQLREQPSASSGSI   63 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~----------------~~~~~l~~~~~d~g~i   63 (451)
                      ..|..++ .++.|.-.|..||+.+-++........   ...|-...+.                ..+..++.++.| +.+
T Consensus       195 g~lYv~t-~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D-g~L  272 (764)
T TIGR03074       195 DTLYLCT-PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD-ARL  272 (764)
T ss_pred             CEEEEEC-CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC-CeE
Confidence            3466667 788999999999999988765432111   0111010021                123355566666 888


Q ss_pred             EEEECCCCceeeeecCCCCee-------------EEEECC--CCcEEEEecc----------CCCEEEEEcCCCcceeee
Q 012996           64 LYWSWSKPQVEVKSLPAEPIK-------------PIAANS--HGTYIAGGGQ----------SGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        64 ~vw~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~  118 (451)
                      .-.|.++++........+.|.             .+.-.|  .+..+++|+.          +|.|+-+|..+|+.+..+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999888776544332221             111222  2345666642          688999999999988776


Q ss_pred             c
Q 012996          119 H  119 (451)
Q Consensus       119 ~  119 (451)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.9  Score=41.38  Aligned_cols=142  Identities=12%  Similarity=0.100  Sum_probs=82.0

Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCC--cceeee-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      +.+-|...++.|++ ...|.+.=|-+...  ...-.+ ....++|.++.|++|.+.+++--.+..|.+++.....     
T Consensus        26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~-----   99 (657)
T KOG2377|consen   26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN-----   99 (657)
T ss_pred             cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc-----
Confidence            44445444444443 23344555554322  122222 2356799999999999999999999999999873210     


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (451)
                        ......+.....+..|.+.+|..+.   -++..+..| +-+|-.... +.++... +...|.-..|.++.+.+..++
T Consensus       100 --~~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  100 --SQLEYTQECKTKNANILGFCWTSST---EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             --hhhHHHHHhccCcceeEEEEEecCe---eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence              1112233334455668888887763   444444444 555544322 2222222 566778888888777655443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.23  E-value=0.21  Score=48.32  Aligned_cols=120  Identities=18%  Similarity=0.171  Sum_probs=74.8

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      ..+.-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |+++.+++.|..+.|.+|.-....-.
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            345555556556655554555679999998887543322 457889999996  58999999999999999865221100


Q ss_pred             hhhhcccccceec--ccCCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996          158 CESQRASHLYLHS--FTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (451)
Q Consensus       158 ~~~~~~~~~~~~~--~~~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~  206 (451)
                      .  ..+....+..  +..|+ .+|.+..|..+|   .+++|+ ++.+.|+|-
T Consensus       110 ~--~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  110 N--KGPSWAPIRKIDISSHTPHPIGDSIWLKDG---TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             c--CCcccceeEEEEeecCCCCCccceeEecCC---eEEEEe-CCEEEEECC
Confidence            0  0112222222  23333 578899999987   444443 356788774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.066  Score=53.76  Aligned_cols=142  Identities=16%  Similarity=0.102  Sum_probs=91.3

Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--------e----eecccceeEEEECCC-CCEEEEEeCCCcEE
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--------N----IVFPSVIDAIALDPA-EHVFYAGSRDGSIY  243 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~----~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~  243 (451)
                      ++..+...++..-..++..+.+-.|..||+++-..-.        .    +.......++.|.|. ....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555555566532344444455578899997543221        1    112344567788884 34466777889998


Q ss_pred             EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC----CCCeeEEEE
Q 012996          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA----KGPVNNILV  318 (451)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~  318 (451)
                      +..+.....        .+.. -.-....++++|+| |..++.|-..|++.-|... ++....+...    ...|.+|+|
T Consensus       182 V~~~~~~~~--------~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  182 VKSTKQLAQ--------NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             hhhhhhhhh--------hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence            887765431        1111 13456789999999 9999999999999999843 4444444322    357999999


Q ss_pred             EecCceeeec
Q 012996          319 VRRPLYLNLG  328 (451)
Q Consensus       319 s~~~~~l~~~  328 (451)
                      -..-.++++-
T Consensus       252 l~t~eflvvy  261 (1405)
T KOG3630|consen  252 LSTQEFLVVY  261 (1405)
T ss_pred             ecceeEEEEe
Confidence            9877777653

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.67  Score=39.62  Aligned_cols=262  Identities=10%  Similarity=0.036  Sum_probs=135.3

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec---
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL---   78 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~---   78 (451)
                      |.+...+. .+..++|.|+++......+.... -.+-..  .  +.-.|++..++..+ ..+.+.|+.++..+....   
T Consensus        96 e~yvyvad-~ssGL~IvDIS~P~sP~~~~~ln-t~gyay--g--v~vsGn~aYVadld-dgfLivdvsdpssP~lagrya  168 (370)
T COG5276          96 EEYVYVAD-WSSGLRIVDISTPDSPTLIGFLN-TDGYAY--G--VYVSGNYAYVADLD-DGFLIVDVSDPSSPQLAGRYA  168 (370)
T ss_pred             ccEEEEEc-CCCceEEEeccCCCCcceecccc-CCceEE--E--EEecCCEEEEeecc-CcEEEEECCCCCCceeeeeec
Confidence            44566666 77889999998766543332111 111112  2  55678888787766 566778887665443322   


Q ss_pred             -CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee--ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           79 -PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        79 -~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                       ....-..++.|  |++-..+..|+-+.|-|+........+  ......+.++..+++..+++...  --+.+-|...  
T Consensus       169 ~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~--  242 (370)
T COG5276         169 LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSG--  242 (370)
T ss_pred             cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCC--
Confidence             23344667776  777777788999999999765432221  11223677888877665555443  3467777754  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee---eeeccc-ceeEEEECCCCC
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR---NIVFPS-VIDAIALDPAEH  231 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~-~i~~~~~~~~~~  231 (451)
                             .+...+........++.--.+.-.+  ++......+.-+.+.|+.+.....   .+...+ .-..+..  .+.
T Consensus       243 -------~ssp~~~gsyet~~p~~~s~v~Vs~--~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~  311 (370)
T COG5276         243 -------PSSPTVFGSYETSNPVSISTVPVSG--EYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGN  311 (370)
T ss_pred             -------CCCceEeeccccCCcccccceeccc--ceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecC
Confidence                   1211222222222222111222333  566777777777777776543221   111111 1222222  334


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      ++..+..+ ...+.+....+...         ...+....+.+.+.+- .+.+.+...++-+.||+.
T Consensus       312 y~yiadkn-~g~vV~~s~~s~m~---------~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         312 YNYIADKN-TGAVVDASPPSMMD---------KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             eeEeccCC-ceEEEeCCChhhcc---------cccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            44444333 34444444332111         1111112222223332 457777788888888875

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.16  E-value=0.21  Score=48.22  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeeec--ccceeEEEEC--CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee-
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-  264 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  264 (451)
                      ...++.+....+.|||.+.+........  ...|..+.|.  |+++.+++.+..+.|.+|.-...........+.++.. 
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            3444444556799999998875554444  7889999985  5888888888999999986533222122222233332 


Q ss_pred             -eccCC-cceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996          265 -LSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       265 -~~~~~-~~v~~~~~~~~~~l~s~~~dg~i~iwd~  297 (451)
                       +..|+ .+|.+..|.++..|++|+ ++.+.|+|-
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence             23444 689999999955555554 456888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=96.10  E-value=0.73  Score=44.07  Aligned_cols=139  Identities=12%  Similarity=0.002  Sum_probs=67.8

Q ss_pred             EEeecCCCCC-----CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC-ccEEEEECCCCceeeee
Q 012996            4 LIASSSVADT-----GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS-GSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-g~i~vw~~~~~~~~~~~   77 (451)
                      +++.|+ .++     ++..||..+++... +.....+ ..-.++   ...++...++||.++ ..+..||..++......
T Consensus       274 lyviGG-~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~-r~~~~~---v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        274 VYLIGG-WMNNEIHNNAIAVNYISNNWIP-IPPMNSP-RLYASG---VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             EEEEcC-CCCCCcCCeEEEEECCCCEEEE-CCCCCch-hhcceE---EEECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            456666 443     46678877665432 1111111 111111   234677777777642 46788887665543322


Q ss_pred             cCCCCe-eEEEECCCCcEEEEeccCC---CEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996           78 LPAEPI-KPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        78 ~~~~~v-~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      ....+. ......-+|++.+.||.++   .+..||..+.+-..  .+....... +++ .-+++..+.|+   .+.+||.
T Consensus       348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp  422 (480)
T PHA02790        348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCE  422 (480)
T ss_pred             CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecC
Confidence            211111 1111223577778877653   47788876653221  111111111 222 23466666663   5678887


Q ss_pred             cc
Q 012996          152 LT  153 (451)
Q Consensus       152 ~~  153 (451)
                      .+
T Consensus       423 ~~  424 (480)
T PHA02790        423 SS  424 (480)
T ss_pred             CC
Confidence            54

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.10  E-value=1.1  Score=41.13  Aligned_cols=151  Identities=16%  Similarity=0.180  Sum_probs=80.2

Q ss_pred             CCeeEEEECCCCcEEEEec-----------cCC-CEEEEEcCC--Ccc--eeeeccccCCeeEEEEccCCcEEEEeeCCC
Q 012996           81 EPIKPIAANSHGTYIAGGG-----------QSG-DIYMWEVAS--GRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDG  144 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  144 (451)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |..  ...+.........+++.+++ +++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4567899999999877642           223 677776543  322  23343334456889999888 444 44443


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccC----CcCceeEEEEeecCCeeEEEEeeC-------------------CCcE
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTG----HTLRITDIVIGYGGVSATIVSASE-------------------DRTC  201 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~~l~s~~~-------------------d~~i  201 (451)
                      ..++.|........   ......+..+..    +......++|.+++  .+.++.+.                   .|.|
T Consensus        92 i~~~~d~~gdg~ad---~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        92 ILFLRDKDGDDKAD---GEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             EEEEeCCCCCCCCC---CccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCceE
Confidence            33333442210000   001112222322    23456788898887  55444331                   1445


Q ss_pred             EEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCC
Q 012996          202 KVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD  239 (451)
Q Consensus       202 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d  239 (451)
                      .-++...++. ..+. .-.....++|+|+|+++++-..+
T Consensus       167 ~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       167 FRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence            5556554432 2333 22345689999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.09  E-value=0.96  Score=42.69  Aligned_cols=154  Identities=14%  Similarity=0.141  Sum_probs=90.0

Q ss_pred             CCeeEEEECCCCcEE-EEec--cCCCEEEEEcCCCcceeeeccccCCeeEEEEccC----CcEEEEeeCCCcEEEeeCcc
Q 012996           81 EPIKPIAANSHGTYI-AGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .++..++|.. |+.+ .+.-  .+|.+++=|   ...+    +.-..|..+.|.|-    ...|++......|.||.+-.
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4788999974 5444 3321  233333322   1223    33356889999983    33456666778999999842


Q ss_pred             hhhhhhhhcccccceecccC-----CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--CceeeeeecccceeEEEE
Q 012996          154 VFEECESQRASHLYLHSFTG-----HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIVFPSVIDAIAL  226 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~i~~~~~  226 (451)
                      ...      ...+.+.....     ...--.++.|+|..  ..|+.-.....-.+++++.  .+....+...+.|.|.||
T Consensus        92 s~~------e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW  163 (671)
T PF15390_consen   92 STT------ERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW  163 (671)
T ss_pred             Ccc------ccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence            111      11111111111     11122456788887  6666666655555666653  344445567889999999


Q ss_pred             CCCCCEEEEEeCC-CcEEEEEccCC
Q 012996          227 DPAEHVFYAGSRD-GSIYIAALNAE  250 (451)
Q Consensus       227 ~~~~~~l~~~~~d-g~i~i~d~~~~  250 (451)
                      .+||..|+++-.. =.-++||-...
T Consensus       164 T~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  164 TKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCcCCEEEEEeCCeEEEEEecCchh
Confidence            9999988876433 35778886554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.03  E-value=1.1  Score=40.54  Aligned_cols=208  Identities=17%  Similarity=0.217  Sum_probs=116.0

Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc----cCCcE--EEEeeC-C---CcEEEeeCcchhhhhh
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS----EDGSF--LISGSE-D---GCVRIWSLLTVFEECE  159 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~s~~~-d---g~i~vwd~~~~~~~~~  159 (451)
                      |...+++....++-+.+||+ .|+.+..+.  .+.++.+..-    -+|+.  |+.++. +   ..|++|.+........
T Consensus        66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            45567777788888999997 466666663  2334433321    13433  444443 2   4699998842100000


Q ss_pred             hhcccccceecccCCcCceeEEEEeecC--CeeEEEEeeCCCcEEEEEcC---CC----ceeeeeecccceeEEEECCCC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLL---KG----RLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      .......+   +......++.+|+..+.  ..-+++....+|.+..|.+.   .+    +.++.|...+.+..|..+...
T Consensus       143 ~v~~~~~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  143 DVTDPAAP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET  219 (381)
T ss_dssp             E-CBTTC----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred             EcCCCCcc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence            00000000   11122346788875432  22577788899988888764   23    467888888899999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec--cCCcceeEEEEec----CCEEEEEc-CCCcEEEEeCCC-Cce
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DHSKAVTCLAYST----GDLLISGS-EDGMVRVWDPIT-HNI  302 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~----~~~l~s~~-~dg~i~iwd~~~-~~~  302 (451)
                      ..|+.+-.+.-|.-|+........    ...+....  .....|-.|++-.    ..||++++ .+++..||+... ...
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~  295 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAY  295 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--E
T ss_pred             CCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcc
Confidence            999999999888888876543211    12232222  2346777887753    23555555 577899999764 344


Q ss_pred             EEEee
Q 012996          303 VRMFR  307 (451)
Q Consensus       303 ~~~~~  307 (451)
                      +..|.
T Consensus       296 ~g~f~  300 (381)
T PF02333_consen  296 VGSFR  300 (381)
T ss_dssp             EEEEE
T ss_pred             cceEE
Confidence            55554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK10115 protease 2; Provisional

Probab=95.96  E-value=2.1  Score=43.03  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=46.1

Q ss_pred             CeeEEEECCCCcEEEEecc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC------CcEEEee
Q 012996           82 PIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWS  150 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd  150 (451)
                      .+..+.++|||++|+.+..     .-.|++.|+.+|..+...-....  ..++|++|++.|+....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999999887532     23488999988864432211211  459999998877655442      3567777


Q ss_pred             Ccc
Q 012996          151 LLT  153 (451)
Q Consensus       151 ~~~  153 (451)
                      +.+
T Consensus       206 lgt  208 (686)
T PRK10115        206 IGT  208 (686)
T ss_pred             CCC
Confidence            755

>PRK10115 protease 2; Provisional

Probab=95.88  E-value=2.2  Score=42.79  Aligned_cols=110  Identities=5%  Similarity=-0.056  Sum_probs=66.6

Q ss_pred             eEEecceEeeccCcccCCCCCC----ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC------CCEEEEE
Q 012996           39 LACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS------GDIYMWE  108 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd  108 (451)
                      +....  ++|+|++++.+...+    ..|++-|+.++........... ..++|++|++.|+....+      ..|+.++
T Consensus       129 l~~~~--~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        129 LGGMA--ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EeEEE--ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            34444  899999988764432    4688999987753322222222 569999999877665432      3578888


Q ss_pred             cCCC--cceeeeccccCCee-EEEEccCCcEEEEeeC---CCcEEEeeC
Q 012996          109 VASG--RLLKKWHAHYRAVT-CLVFSEDGSFLISGSE---DGCVRIWSL  151 (451)
Q Consensus       109 ~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~---dg~i~vwd~  151 (451)
                      +.++  +....+........ .+..+.++++++..+.   ++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8877  33334443333333 3333447777664433   456888885

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.88  E-value=2.3  Score=42.84  Aligned_cols=269  Identities=12%  Similarity=0.093  Sum_probs=135.5

Q ss_pred             cCcccCCCC-CCccEEEEECCCCcee---eeecCCCCeeEEE--ECCC-CcEEEEeccCCCEEEEEcCCCccee-eeccc
Q 012996           50 SQLREQPSA-SSGSILYWSWSKPQVE---VKSLPAEPIKPIA--ANSH-GTYIAGGGQSGDIYMWEVASGRLLK-KWHAH  121 (451)
Q Consensus        50 ~~~l~~~~~-d~g~i~vw~~~~~~~~---~~~~~~~~v~~~~--~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~  121 (451)
                      ++.+.++|. .||++++..-.-+-..   .....-..+..+.  +.++ .++|+.+-.+ .-++..+.. +... ...+-
T Consensus       370 ~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~-e~ee~~~~gf  447 (1096)
T KOG1897|consen  370 GQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISE-EVEETEDPGF  447 (1096)
T ss_pred             ceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEecc-ceEEEEEcc-ceEEeccccc
Confidence            344433333 3599999874322111   1112234566666  4331 2366665443 445555432 2111 11222


Q ss_pred             cCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          122 YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       122 ~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      ......+..+. .++.|+=...+ .|++++-..             ....+.. +..++....+.+.  ..++.++.++.
T Consensus       448 ~~~~~Tif~S~i~g~~lvQvTs~-~iRl~ss~~-------------~~~~W~~-p~~~ti~~~~~n~--sqVvvA~~~~~  510 (1096)
T KOG1897|consen  448 STDEQTIFCSTINGNQLVQVTSN-SIRLVSSAG-------------LRSEWRP-PGKITIGVVSANA--SQVVVAGGGLA  510 (1096)
T ss_pred             cccCceEEEEccCCceEEEEecc-cEEEEcchh-------------hhhcccC-CCceEEEEEeecc--eEEEEecCccE
Confidence            23333344433 34444433333 577776521             1222222 3334444444444  57777777787


Q ss_pred             EEEEEcCCCceeee--eecccceeEEEECCCC------CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          201 CKVWSLLKGRLLRN--IVFPSVIDAIALDPAE------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       201 i~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      +...++..+.....  ......|.|+.++|-+      +++++|..+..+.+.-......       ........-..-.
T Consensus       511 l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~-------~~~~~~l~~~~iP  583 (1096)
T KOG1897|consen  511 LFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI-------LITHEQLSGEIIP  583 (1096)
T ss_pred             EEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc-------eeeeeccCCCccc
Confidence            87777776653222  2267889999999842      3788898877655543322210       1111111122222


Q ss_pred             eEEEEe---c-CCEEEEEcCCCcEEEE--eCCCCceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          273 TCLAYS---T-GDLLISGSEDGMVRVW--DPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       273 ~~~~~~---~-~~~l~s~~~dg~i~iw--d~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      .++-+.   . ..+|.++..||.+.-|  |..++..-..-+  ....|+.--.|+..++.-+-+..|....+|..++...
T Consensus       584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv  663 (1096)
T KOG1897|consen  584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLV  663 (1096)
T ss_pred             hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEE
Confidence            333333   3 5799999999998766  444554332222  2244666667776555444444566666666555443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.82  E-value=2.3  Score=42.52  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             CCeeEEEEccCCcEEEEeeCCCcEEEeeCcch-hhhhhhhcccc-cceec--------ccCCcCceeEEEEeecC-CeeE
Q 012996          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV-FEECESQRASH-LYLHS--------FTGHTLRITDIVIGYGG-VSAT  191 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~-~~~~~--------~~~~~~~i~~i~~~~~~-~~~~  191 (451)
                      -.|..|.++|+|++++..|..| |.|..+... ........... ...++        ...+...|..+.|+|.+ .+..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688899999999999888865 555555321 00000000000 01111        12456788999999975 2478


Q ss_pred             EEEeeCCCcEEEEEcCCC
Q 012996          192 IVSASEDRTCKVWSLLKG  209 (451)
Q Consensus       192 l~s~~~d~~i~iwd~~~~  209 (451)
                      |+.-+.|+++++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.65  E-value=0.017  Score=56.19  Aligned_cols=137  Identities=14%  Similarity=0.237  Sum_probs=84.5

Q ss_pred             CCeEEEECc--cCceeeee-----ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeE
Q 012996           13 TGIGCWDLE--SGAEQLRY-----KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP   85 (451)
Q Consensus        13 g~i~vwd~~--~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~   85 (451)
                      |.+.|||+.  .|+....+     ......+..|....  |.++..++..+-.+ ++|++.++++........|...+..
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp--~~~~~~~ic~~~~~-~~i~lL~~~ra~~~l~rsHs~~~~d  229 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP--IAVNKVYICYGLKG-GEIRLLNINRALRSLFRSHSQRVTD  229 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecc--cccccceeeeccCC-CceeEeeechHHHHHHHhcCCCccc
Confidence            567889876  45443332     22334455666666  77777655555444 9999998876655444346555444


Q ss_pred             EE-----------ECCCCcEEEEeccCCCEEEEEcC-----CCcceeeecccc-CCeeEEEEccCC---------cEEEE
Q 012996           86 IA-----------ANSHGTYIAGGGQSGDIYMWEVA-----SGRLLKKWHAHY-RAVTCLVFSEDG---------SFLIS  139 (451)
Q Consensus        86 ~~-----------~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~s  139 (451)
                      ++           .||||..+|.++.||.++.|.+.     ...++..++.|. .+-.|.-|+.+.         .++++
T Consensus       230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence            43           58999999999999998888763     335666777777 333333343321         23444


Q ss_pred             eeC-CCcEEEeeCc
Q 012996          140 GSE-DGCVRIWSLL  152 (451)
Q Consensus       140 ~~~-dg~i~vwd~~  152 (451)
                      ++. +..+++|.-.
T Consensus       310 ttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEA  323 (1283)
T ss_pred             cccCCcceeEeecc
Confidence            443 5568888753

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.98  Score=36.58  Aligned_cols=177  Identities=12%  Similarity=0.028  Sum_probs=101.8

Q ss_pred             CCcEEEEeeCC--CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc
Q 012996          133 DGSFLISGSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR  210 (451)
Q Consensus       133 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  210 (451)
                      +|.++.+.+.-  ..|++||+.++......         .+.  ...+.+=-...-++ .+..-.-.+|.-..+|..+.+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~---------~l~--~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~  122 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSE---------KLA--PDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLE  122 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEe---------ecC--Cccccccceeeccc-eEEEEEeccceeEEEChHHhh
Confidence            45666666653  46999999764322111         111  01111100111121 333445578888999999999


Q ss_pred             eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCCEEEEEcCC
Q 012996          211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSED  289 (451)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~d  289 (451)
                      .+..+..++.-..++.  ++..|+.+.....++.-|..+.....     ....+..+. -..++-+.|-.|...|-.=.+
T Consensus       123 ~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~-----~v~VT~~g~pv~~LNELE~VdG~lyANVw~t  195 (262)
T COG3823         123 ELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELD-----TVQVTDDGVPVSKLNELEWVDGELYANVWQT  195 (262)
T ss_pred             hhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcc-----eEEEEECCeecccccceeeeccEEEEeeeee
Confidence            9998888887777765  44557666666667776665532111     111122111 123344555555555555566


Q ss_pred             CcEEEEeCCCCceEEEee------------cCCCCeeEEEEEecC-ceeeec
Q 012996          290 GMVRVWDPITHNIVRMFR------------LAKGPVNNILVVRRP-LYLNLG  328 (451)
Q Consensus       290 g~i~iwd~~~~~~~~~~~------------~~~~~v~~l~~s~~~-~~l~~~  328 (451)
                      ..|...|..+|+.+..+.            .|..-.+.+++.|++ +++++|
T Consensus       196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            667777888888777665            234467889999977 566665

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.47  E-value=0.21  Score=45.83  Aligned_cols=143  Identities=12%  Similarity=0.129  Sum_probs=88.9

Q ss_pred             EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC-------EEEEEeCCCcEEEEEccCCCC
Q 012996          180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH-------VFYAGSRDGSIYIAALNAESP  252 (451)
Q Consensus       180 ~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~  252 (451)
                      -+-.+....+-++..|+....++-.|+..|+.+........+ -+.|.|..+       .-++|-.+..|.-.|.+....
T Consensus       471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN  549 (776)
T COG5167         471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN  549 (776)
T ss_pred             hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence            333333333234456667778888999999999988866666 677887532       234555666666666655431


Q ss_pred             CCCCCCceeeeeecc--CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          253 STSSYGMHIIGSLSD--HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       253 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      ..      .+.....  ......+..-....++++||..|-|++||--.-+--..+.+....|..+..+.+|.++++.+
T Consensus       550 Ki------~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         550 KI------KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             ce------eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence            00      0111110  11122222222267999999999999999554444445666677899999999999886655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.46  E-value=0.66  Score=46.23  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEccCC-CCCC----CCCCcee----ee---eeccCCcceeEEEEec----CCE
Q 012996          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAE-SPST----SSYGMHI----IG---SLSDHSKAVTCLAYST----GDL  282 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~----~~~~~~~----~~---~~~~~~~~v~~~~~~~----~~~  282 (451)
                      -.|..+.++|+|.+++..|..|. .+..+... ....    ......+    +.   ....+...|..+.|+|    +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            46889999999999999888664 44444321 1000    0000010    00   0123456899999999    479


Q ss_pred             EEEEcCCCcEEEEeCCCC
Q 012996          283 LISGSEDGMVRVWDPITH  300 (451)
Q Consensus       283 l~s~~~dg~i~iwd~~~~  300 (451)
                      |+.-..|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.46  E-value=0.89  Score=44.62  Aligned_cols=154  Identities=12%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             CcEEEEeccCCCEEEEEcCCCccee------eec----------------cccCCeeEEEEcc--CCcEEEEeeCCCcEE
Q 012996           92 GTYIAGGGQSGDIYMWEVASGRLLK------KWH----------------AHYRAVTCLVFSE--DGSFLISGSEDGCVR  147 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~~~~------~~~----------------~~~~~v~~~~~~~--~~~~l~s~~~dg~i~  147 (451)
                      +++++++. .+.|.||+........      .+.                .....|+.|....  +...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56666654 5689999875432211      100                0112344554433  456789999999999


Q ss_pred             EeeCcchhhhhhhhc---------ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--cee--ee
Q 012996          148 IWSLLTVFEECESQR---------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLL--RN  214 (451)
Q Consensus       148 vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~--~~  214 (451)
                      +|.+++.........         ....+...+. -...+++++++.....++||+++....|.||-+...  +..  ..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            998865432221110         0011111222 344788899882222388889888888888765432  111  12


Q ss_pred             eecccceeEEEECCCC---C---EEEEEeCCCcEEEEEc
Q 012996          215 IVFPSVIDAIALDPAE---H---VFYAGSRDGSIYIAAL  247 (451)
Q Consensus       215 ~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  247 (451)
                      ..+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            3466789999997743   2   7788899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.43  E-value=1.5  Score=37.74  Aligned_cols=151  Identities=17%  Similarity=0.087  Sum_probs=85.5

Q ss_pred             CeeEEEEccCCcEEEEee---CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          124 AVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      .+.+.+++++++.++...   ....+.++....            .......  ...+..-.|++++  ...+....+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~------------~~~~~~~--g~~l~~PS~d~~g--~~W~v~~~~~~   88 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG------------PVRPVLT--GGSLTRPSWDPDG--WVWTVDDGSGG   88 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC------------cceeecc--CCccccccccCCC--CEEEEEcCCCc
Confidence            688999999998877655   233455555422            1111112  2255566777775  55555555666


Q ss_pred             EEEEE-cCCCceee-eee---cccceeEEEECCCCCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          201 CKVWS-LLKGRLLR-NIV---FPSVIDAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       201 i~iwd-~~~~~~~~-~~~---~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      .+++. ...+.... ...   ....|..+.++|+|..++...   .++.|++--+.............+..........+
T Consensus        89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v  168 (253)
T PF10647_consen   89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV  168 (253)
T ss_pred             eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence            66663 33333221 222   112899999999999888765   35778877664432211111112222233345789


Q ss_pred             eEEEEec-CCEEEEEcCCC
Q 012996          273 TCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       273 ~~~~~~~-~~~l~s~~~dg  290 (451)
                      +.+.|.+ +.+++.+...+
T Consensus       169 ~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  169 TDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eeeeecCCCEEEEEeCCCC
Confidence            9999999 66655554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.11  E-value=2.5  Score=38.28  Aligned_cols=153  Identities=8%  Similarity=0.063  Sum_probs=81.1

Q ss_pred             cCCeeEEEEccCCcEEEEeeCCCcEEE-eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          122 YRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      .+.+.++.+.|++.+++++ ..|.+.. ++-           ...........-...++++.+.+++  ..+++ +..|.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-----------gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~G~  236 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-----------GQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARGGQ  236 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCC-----------CCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecCCE
Confidence            4578899999988766554 4455443 221           1111111122334577888888876  55554 45676


Q ss_pred             EEEEEcCCCceeeeeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996          201 CKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (451)
Q Consensus       201 i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  275 (451)
                      +++=....+..-.....     ...+.++.+.|++..++ ++.+|.+.. ..+.+.      .+..+.....-....+.+
T Consensus       237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~------tW~~~~~~~~~~~~~~~~  308 (334)
T PRK13684        237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGK------TWEKDPVGEEVPSNFYKI  308 (334)
T ss_pred             EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCC------CCeECCcCCCCCcceEEE
Confidence            65323334433222221     23477889998777555 455675553 333322      112221111223467777


Q ss_pred             EEecCCEEEEEcCCCcEEEEeC
Q 012996          276 AYSTGDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       276 ~~~~~~~l~s~~~dg~i~iwd~  297 (451)
                      .|..+...+..+..|.|.-|+-
T Consensus       309 ~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        309 VFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             EEeCCCceEEECCCceEEEecC
Confidence            7776334455667888887763

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.89  E-value=1.1  Score=42.42  Aligned_cols=148  Identities=15%  Similarity=0.316  Sum_probs=91.0

Q ss_pred             CCeeEEEEccCCcE-EEEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe--eEEEEeeC
Q 012996          123 RAVTCLVFSEDGSF-LISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS--ATIVSASE  197 (451)
Q Consensus       123 ~~v~~~~~~~~~~~-l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--~~l~s~~~  197 (451)
                      .++..++|. ||+. +++.-  .+|.+++=|-                  ..-+.-..|.++.|.|.+..  ..+++...
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------------------~viGqFEhV~GlsW~P~~~~~~paLLAVQH   80 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------------------KVIGQFEHVHGLSWAPPCTADTPALLAVQH   80 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc------------------cEeeccceeeeeeecCcccCCCCceEEEec
Confidence            478899998 4544 44432  2344443332                  11234456888999875321  35666677


Q ss_pred             CCcEEEEEcCC-----Cceeee----ee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          198 DRTCKVWSLLK-----GRLLRN----IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       198 d~~i~iwd~~~-----~~~~~~----~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                      ...|.+|.+.-     ++.+..    +.  .+--...+.|+|....|++-+....-.+++.+...        ..+..-.
T Consensus        81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--------srVkaDi  152 (671)
T PF15390_consen   81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--------SRVKADI  152 (671)
T ss_pred             cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--------ceEEEec
Confidence            88999998852     222221    11  23334578899999999988777666677766543        2232223


Q ss_pred             cCCcceeEEEEec-CCEEEEE-cCCCcEEEEeC
Q 012996          267 DHSKAVTCLAYST-GDLLISG-SEDGMVRVWDP  297 (451)
Q Consensus       267 ~~~~~v~~~~~~~-~~~l~s~-~~dg~i~iwd~  297 (451)
                      ...+.|.|.+|.+ |..|+++ +..=.-+|||-
T Consensus       153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            4568899999999 7766665 33334677873

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.82  E-value=2.6  Score=37.15  Aligned_cols=188  Identities=13%  Similarity=0.161  Sum_probs=91.0

Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCC-cc-eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RL-LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      ...+....++..+++ +..|.|  |...++ +. ......-.+.+..+.-++||+++++++.-..+.-||.-.       
T Consensus       106 ~~~i~~l~~~~~~l~-~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~-------  175 (302)
T PF14870_consen  106 PFGITALGDGSAELA-GDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ-------  175 (302)
T ss_dssp             EEEEEEEETTEEEEE-ETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--------
T ss_pred             eeEEEEcCCCcEEEE-cCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC-------
Confidence            344444444444444 334544  333333 22 222344457788899999999888887655566787621       


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeee----e-ecccceeEEEECCCCCEEE
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRN----I-VFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~----~-~~~~~i~~~~~~~~~~~l~  234 (451)
                          .............|.++.|.+++  .+.+ ....|.|+.=+.. ..+.-..    + .....+..++|.+++...+
T Consensus       176 ----~~w~~~~r~~~~riq~~gf~~~~--~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa  248 (302)
T PF14870_consen  176 ----TTWQPHNRNSSRRIQSMGFSPDG--NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA  248 (302)
T ss_dssp             ----SS-EEEE--SSS-EEEEEE-TTS---EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred             ----ccceEEccCccceehhceecCCC--CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence                22222233356789999999986  4444 4488888888722 2222111    1 1233478999999887777


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEE
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW  295 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iw  295 (451)
                      +|+. |.+ +...+.++      .++.......-...++.|.|.+.+.-.+.+.+|.|.-|
T Consensus       249 ~gg~-G~l-~~S~DgGk------tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  249 VGGS-GTL-LVSTDGGK------TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEST-T-E-EEESSTTS------S-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             EeCC-ccE-EEeCCCCc------cceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            6654 433 33333332      12333333334567888888774445555678877655

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.70  E-value=2.1  Score=44.48  Aligned_cols=139  Identities=17%  Similarity=0.237  Sum_probs=85.1

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEe---cceEeeccCcccCCCCCCccEEEEECCCCc----eee-----ee-
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACV---GQRFLASSQLREQPSASSGSILYWSWSKPQ----VEV-----KS-   77 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~-----~~-   77 (451)
                      .|..+.+|+.+++.....+.+....+-.|.-+   ++-|.|.=+++++.+.. -.|.++-+....    ...     .. 
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceeee
Confidence            57899999999987777776544332222222   13466666776666555 677777654222    111     11 


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEc----CCC---c-c----------------eeeec-cccCCeeEEEEcc
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----ASG---R-L----------------LKKWH-AHYRAVTCLVFSE  132 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~  132 (451)
                      ..+-.|.|+....+|+.+++| .||.  +|.+    .++   + +                +-.+. .+.++|..+....
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            125578999988899888775 4553  4443    111   0 0                01112 4566788888877


Q ss_pred             CCcEEEEeeCCCcEEEeeCcc
Q 012996          133 DGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus       133 ~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ....+.+-+..|.|.+|++..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            777777777888888888754

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.65  E-value=0.0053  Score=55.44  Aligned_cols=143  Identities=20%  Similarity=0.272  Sum_probs=99.3

Q ss_pred             ceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEE-eccCCCEEEEEcCCCccee-eec-c
Q 012996           44 QRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAG-GGQSGDIYMWEVASGRLLK-KWH-A  120 (451)
Q Consensus        44 ~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~-~~~-~  120 (451)
                      ..|-|.+..++.++.+ ..+..||- .++.......++....++|..++..+++ +-..+.+.+||+.+...-. .+. .
T Consensus        40 ~~w~~e~~nlavaca~-tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~  117 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACAN-TIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT  117 (615)
T ss_pred             eeEecCCCceehhhhh-hHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence            3388888889999887 88888884 4444455556677788999888876544 4567889999987653211 111 1


Q ss_pred             ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      |...  -+.|++.+..++.+...|.+.+++..+           .........|...++++++.+.+   +.+.++.|..
T Consensus       118 ~s~s--ll~wsKg~~el~ig~~~gn~viynhgt-----------sR~iiv~Gkh~RRgtq~av~lEd---~vil~dcd~~  181 (615)
T KOG2247|consen  118 SSKS--LLAWSKGTPELVIGNNAGNIVIYNHGT-----------SRRIIVMGKHQRRGTQIAVTLED---YVILCDCDNT  181 (615)
T ss_pred             chHH--HHhhccCCccccccccccceEEEeccc-----------hhhhhhhcccccceeEEEecccc---eeeecCcHHH
Confidence            2222  278899888899998999999999854           22223334488899999998874   6777777665


Q ss_pred             EEEE
Q 012996          201 CKVW  204 (451)
Q Consensus       201 i~iw  204 (451)
                      +.+-
T Consensus       182 L~v~  185 (615)
T KOG2247|consen  182 LSVT  185 (615)
T ss_pred             HHHh
Confidence            5443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.55  E-value=1.2  Score=33.38  Aligned_cols=119  Identities=12%  Similarity=0.040  Sum_probs=72.0

Q ss_pred             EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee---cCCeeEEEEeeCCCcEEE
Q 012996          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGVSATIVSASEDRTCKV  203 (451)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~l~s~~~d~~i~i  203 (451)
                      .-.|......|++++.-|.|.|++..........   ....+..+ .-...|++++-.+   +.....|+.|+. ..+..
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~lla   77 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLA   77 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCcccccccc---ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEE
Confidence            3456666667888889999999998653221111   11122222 2345677776544   333356666654 56999


Q ss_pred             EEcCCCceeeeeecccceeEEEECC---CCCEEEEEeCCCcEEEEEccCC
Q 012996          204 WSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       204 wd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      ||+.....+.....+..++++.+-.   ...-++..+.+..|.-||....
T Consensus        78 YDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   78 YDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             EEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            9999888877777778888887743   2233444444556666665543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.41  E-value=0.17  Score=29.24  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=25.7

Q ss_pred             CCeeEEEECCCC---cEEEEeccCCCEEEEEcCC
Q 012996           81 EPIKPIAANSHG---TYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        81 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~  111 (451)
                      +.|.++.|+|+.   .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4888877789999999985

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.19  E-value=3.7  Score=36.24  Aligned_cols=229  Identities=11%  Similarity=0.067  Sum_probs=101.6

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeee--ccc---cCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKW--HAH---YRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~--~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      ....++..|.|..+..-+++|.. +.  |+...++ +.-...  ...   .-...+|.|..+ ..+++ +..|. .+...
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~~-g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~   87 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGAY-GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTT   87 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEETT-TE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEES
T ss_pred             CCCCceEEEEEecCCEEEEEecC-CE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEec
Confidence            34568999999866666777654 43  3444333 211111  111   123567777643 33444 44553 23222


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPA  229 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~  229 (451)
                      ..+        .....+..-..-++....+....+.  ..++. +..|.|+.=. ..|+.-..+.  ....+..+..+++
T Consensus        88 DgG--------~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~-~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~d  155 (302)
T PF14870_consen   88 DGG--------KTWERVPLSSKLPGSPFGITALGDG--SAELA-GDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSD  155 (302)
T ss_dssp             STT--------SS-EE----TT-SS-EEEEEEEETT--EEEEE-ETT--EEEES-STTSSEEEEE-S----EEEEEE-TT
T ss_pred             CCC--------CCcEEeecCCCCCCCeeEEEEcCCC--cEEEE-cCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCC
Confidence            211        1111111111112233334433333  33333 3444433221 2233222222  3467888889999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe-CCCCceEEE--
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD-PITHNIVRM--  305 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd-~~~~~~~~~--  305 (451)
                      |++++++.......-||-....       +.+..  ..-...|.+|.|+| +.+.+ ....|.|++=+ ....+....  
T Consensus       156 G~~vavs~~G~~~~s~~~G~~~-------w~~~~--r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~  225 (302)
T PF14870_consen  156 GRYVAVSSRGNFYSSWDPGQTT-------WQPHN--RNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPI  225 (302)
T ss_dssp             S-EEEEETTSSEEEEE-TT-SS--------EEEE----SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B
T ss_pred             CcEEEEECcccEEEEecCCCcc-------ceEEc--cCccceehhceecCCCCEEE-EeCCcEEEEccCCCCcccccccc
Confidence            9999988766666677754421       22222  22457899999999 55544 44888888887 222222222  


Q ss_pred             --eecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          306 --FRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       306 --~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                        +....-.+.+++|.+++...|+|+. |.+.
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~  256 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL  256 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS-EEEEEST-T-EE
T ss_pred             CCcccCceeeEEEEecCCCCEEEEeCC-ccEE
Confidence              1111224789999998877776654 4443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=94.13  E-value=4.8  Score=37.22  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=42.6

Q ss_pred             ccCcccCCCCCCccEEEEECCCC--ceeeee-cC-CCCeeEEEECCCCcEEEEeccCC-----------CEEEEEcCCCc
Q 012996           49 SSQLREQPSASSGSILYWSWSKP--QVEVKS-LP-AEPIKPIAANSHGTYIAGGGQSG-----------DIYMWEVASGR  113 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~--~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~  113 (451)
                      ++...+.+|..+..+.++|++..  ...... .+ ..........-++.+.+.|+...           .+..||..+.+
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~  117 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS  117 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence            45555545554466778887642  221111 11 11111112223566777776532           47788876653


Q ss_pred             ceeeeccccCCe--eEEEEccCCcEEEEeeCC
Q 012996          114 LLKKWHAHYRAV--TCLVFSEDGSFLISGSED  143 (451)
Q Consensus       114 ~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d  143 (451)
                      -...-.......  .+.....++++.+.|+.+
T Consensus       118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            222111001111  111221367777777754

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.13  E-value=0.0068  Score=54.81  Aligned_cols=153  Identities=15%  Similarity=0.094  Sum_probs=103.5

Q ss_pred             ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      +-.......|.+.+.-++.++.+..+..||-..            ..... ...++....++|..+++ ..++.+-..+.
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~ag------------q~~le-~n~tg~aldm~wDkegd-vlavlAek~~p   98 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAG------------QVILE-LNPTGKALDMAWDKEGD-VLAVLAEKTGP   98 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhc------------ceecc-cCCchhHhhhhhccccc-hhhhhhhcCCC
Confidence            333444567888777788888888899998632            11111 12344555677777664 56667778899


Q ss_pred             EEEEEcCCCceee-eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          201 CKVWSLLKGRLLR-NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       201 i~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      +.+||+.+....+ .......-.-+.|++....++.|...|.+.+|+.....         .+...-.|...++++++.+
T Consensus        99 iylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR---------~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   99 IYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR---------RIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             eeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh---------hhhhhcccccceeEEEecc
Confidence            9999997543211 11122222237899999999999999999999988753         2323333899999999999


Q ss_pred             CCEEEEEcCCCcEEEEe
Q 012996          280 GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       280 ~~~l~s~~~dg~i~iwd  296 (451)
                      .++.+.++.|..+.+-.
T Consensus       170 Ed~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  170 EDYVILCDCDNTLSVTT  186 (615)
T ss_pred             cceeeecCcHHHHHHhh
Confidence            88888888887665544

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=1.1  Score=46.80  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=26.7

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  110 (451)
                      ......++|+|...++|.|+..|.|++|-..
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEeccc
Confidence            3456788999999999999999999999754

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.00  E-value=0.35  Score=43.80  Aligned_cols=163  Identities=15%  Similarity=0.119  Sum_probs=97.5

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee-ee-ccccC----Cee-EEEEccCCcEEEEeeCCCcEEEe-eC
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KW-HAHYR----AVT-CLVFSEDGSFLISGSEDGCVRIW-SL  151 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~----~v~-~~~~~~~~~~l~s~~~dg~i~vw-d~  151 (451)
                      ...|..+-..|||+.+.+-+. ..+.|+++.+..... .+ ....+    .|+ .+..-..|.-++.+..||.|.-| |+
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence            456778888999998877555 578888876543221 11 11111    122 22223346668888999999887 55


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (451)
                      +....      .....++.++-...++.-+  .|+...+-+++-+..|++..+.....+.+-.-..-..+.-+++||.+.
T Consensus       299 r~~~~------p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~  370 (733)
T COG4590         299 RRDGQ------PHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA  370 (733)
T ss_pred             ecCCC------CcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccc
Confidence            43111      1112222333223333322  244444678888888998888755444433323334677889999999


Q ss_pred             EEEEEeCCCcEEEEEccCCCC
Q 012996          232 VFYAGSRDGSIYIAALNAESP  252 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~  252 (451)
                      ++++- +.|.|+++.+.+..+
T Consensus       371 ~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         371 YLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             hheee-cCCceEEEEecCCCC
Confidence            98864 457899999888665

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.87  E-value=3.1  Score=34.18  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             EEEEeeCCCcEEEEEcC--CCceeeeeecccceeEEEECCCCCEEEEEeCCC------cEEEE-EccCCCCCCC------
Q 012996          191 TIVSASEDRTCKVWSLL--KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG------SIYIA-ALNAESPSTS------  255 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~-d~~~~~~~~~------  255 (451)
                      .|+.+.....|.+|++.  ..+....+..-+.|..+.++..|+++++--.+.      .+|+| +.+.......      
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi  109 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI  109 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence            44444667789999988  345667777778999999999999999864322      45554 2221100000      


Q ss_pred             -----------CCC-ceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCC
Q 012996          256 -----------SYG-MHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       256 -----------~~~-~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~  300 (451)
                                 ... .-.+-.+. -..++.+++-.|  |++++ |+ ++++.+|.+...
T Consensus       110 aG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  110 AGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQ  165 (215)
T ss_pred             cccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEE
Confidence                       000 00111121 245778888888  66555 33 567888876543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.53  E-value=0.36  Score=27.91  Aligned_cols=30  Identities=37%  Similarity=0.578  Sum_probs=25.7

Q ss_pred             cceeEEEEec--C--CEEEEEcCCCcEEEEeCCC
Q 012996          270 KAVTCLAYST--G--DLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       270 ~~v~~~~~~~--~--~~l~s~~~dg~i~iwd~~~  299 (451)
                      +.|.++.|+|  +  ++|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999997  4  6888888889999999985

It contains a characteristic DLL sequence motif.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.53  E-value=5.8  Score=36.16  Aligned_cols=40  Identities=3%  Similarity=-0.009  Sum_probs=19.4

Q ss_pred             CcEEEEEcCCCceeeeeeccc--ceeEEEECCCCCEEEEEeC
Q 012996          199 RTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~  238 (451)
                      ..+.+||..+.+-...-..+.  .....+..-++++++.|+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  209 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE  209 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence            457888987764333212111  1111122235667777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.52  E-value=1.5  Score=40.68  Aligned_cols=139  Identities=12%  Similarity=0.137  Sum_probs=84.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcc-------cCCCCCCccEEEEECC--CCce
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLR-------EQPSASSGSILYWSWS--KPQV   73 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-------~~~~~d~g~i~vw~~~--~~~~   73 (451)
                      +++..|+ ....+.=-|++.|+.+..+..+...     .+.  |.|..++-       ++|-++ ..|.-.|..  .+++
T Consensus       481 li~~dg~-~~~kLykmDIErGkvveeW~~~ddv-----vVq--y~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi  551 (776)
T COG5167         481 LIYLDGG-ERDKLYKMDIERGKVVEEWDLKDDV-----VVQ--YNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKI  551 (776)
T ss_pred             eEEecCC-CcccceeeecccceeeeEeecCCcc-----eee--cCCchhHHhcCccceEEeecc-cceEEecccccCCce
Confidence            4455566 6777778888999998888765422     222  55543221       122222 333333332  1111


Q ss_pred             eeeec----CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           74 EVKSL----PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        74 ~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      .....    ......|..-. ...|+|+|+..|.|++||--.-+....+++....|..+..+.+|+++++.+.. .+.+-
T Consensus       552 ~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~  629 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT  629 (776)
T ss_pred             eeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence            11110    12222333222 35589999999999999965445555667888899999999999998877654 78888


Q ss_pred             eCc
Q 012996          150 SLL  152 (451)
Q Consensus       150 d~~  152 (451)
                      |+.
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            874

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.50  E-value=6.1  Score=36.39  Aligned_cols=199  Identities=17%  Similarity=0.136  Sum_probs=104.6

Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccc--cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccce
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL  168 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  168 (451)
                      +++ +.++..+|.|.-.|..++..+.....-  ...+.+-.+..+|+ ++.++.+|.+..+|.+++..           .
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-----------~  134 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-----------V  134 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-----------E
Confidence            444 445577888888888888765433222  12233333333665 77888888888888754322           2


Q ss_pred             ecccCCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccc-eeEEEEC--CCCCEEEEEeC--CCcE
Q 012996          169 HSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV-IDAIALD--PAEHVFYAGSR--DGSI  242 (451)
Q Consensus       169 ~~~~~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-i~~~~~~--~~~~~l~~~~~--dg~i  242 (451)
                      -...... ..+..-.+..+   ..++.++.++.+...|..++........+.. -.....+  .....++.+..  ++.+
T Consensus       135 W~~~~~~~~~~~~~~v~~~---~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~  211 (370)
T COG1520         135 WSRNVGGSPYYASPPVVGD---GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGIL  211 (370)
T ss_pred             EEEecCCCeEEecCcEEcC---cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceE
Confidence            2111111 11111122222   3455555788999999888888776554321 1111111  23445555555  5666


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCcc--eeEEEEec---CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSKA--VTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      .-.|..++........    ....+....  ...+...+   +.-+..++.+|.+...|..+++.+-.+...
T Consensus       212 ~a~~~~~G~~~w~~~~----~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         212 YALNAEDGTLKWSQKV----SQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             EEEEccCCcEeeeeee----ecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            6667666543221100    001111100  01111111   344566777888889999999998888764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.41  E-value=6  Score=36.03  Aligned_cols=95  Identities=16%  Similarity=0.191  Sum_probs=42.2

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeec---C-CCCeeEEEECCCCcEEEEeccC-----------CCEEEEEcCCCc
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSL---P-AEPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASGR  113 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~  113 (451)
                      ++...+++|.....+..+|++.........   + ..........-++.+.+.|+.+           ..+..||..+.+
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~   96 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS   96 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence            345555555443567777764322111111   1 1111111222356777777653           247778876654


Q ss_pred             ceeeeccccCCeeEE-EE-ccCCcEEEEeeCC
Q 012996          114 LLKKWHAHYRAVTCL-VF-SEDGSFLISGSED  143 (451)
Q Consensus       114 ~~~~~~~~~~~v~~~-~~-~~~~~~l~s~~~d  143 (451)
                      -............+. .. .-+++..+.|+.+
T Consensus        97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            222111111111111 11 2367777777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.24  E-value=4.4  Score=37.25  Aligned_cols=147  Identities=10%  Similarity=0.116  Sum_probs=76.8

Q ss_pred             ceeEEEEeecCCeeEEEEee-----------CCC-cEEEEEcCC--Cce--eeeee-cccceeEEEECCCCCEEEEEeCC
Q 012996          177 RITDIVIGYGGVSATIVSAS-----------EDR-TCKVWSLLK--GRL--LRNIV-FPSVIDAIALDPAEHVFYAGSRD  239 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~-----------~d~-~i~iwd~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~d  239 (451)
                      ....|+|.+++  +++++-.           ..+ .|.+++-.+  ++.  ...+. .-.....+++.+++  |+++...
T Consensus        15 ~P~~ia~d~~G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        15 NPIAVCFDERG--RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCceeeECCCC--CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            34567887776  5555532           223 677776543  322  22232 23345788998888  5555544


Q ss_pred             CcEEEEEccCCCCCCCCCCceeeeeecc----CCcceeEEEEec-CCEEEEEcCC-------------------CcEEEE
Q 012996          240 GSIYIAALNAESPSTSSYGMHIIGSLSD----HSKAVTCLAYST-GDLLISGSED-------------------GMVRVW  295 (451)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~l~s~~~d-------------------g~i~iw  295 (451)
                      ...++.|........ ......+..+..    +......+.|.| |.+.++-+..                   |.|.-+
T Consensus        91 ~i~~~~d~~gdg~ad-~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 DILFLRDKDGDDKAD-GEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             eEEEEeCCCCCCCCC-CccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            433344544321110 000011222222    235578899999 7665554421                   445556


Q ss_pred             eCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      +...++. ..+.........++|+|+|.++++-.
T Consensus       170 ~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            6554443 23322233457899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.98  E-value=0.99  Score=37.82  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeee---------------cccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIV---------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      .++++.+.+|.+++||+.+++.+..-.               ....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            789999999999999999887654331               123455666665555544433 35566665543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.65  E-value=2.9  Score=33.98  Aligned_cols=108  Identities=12%  Similarity=0.015  Sum_probs=59.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .+.-+|-+....|++||+.+|+.+.+-...   +..+..-+  ...-|.++..-...+|....+|.++-+..-...-.+.
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---~~~~FgEG--it~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge  132 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLA---PDTVFGEG--ITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE  132 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecC---Cccccccc--eeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence            344555545567999999999988765433   11222111  2222333333333347778888776655444333444


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  117 (451)
                      =..++.  |+..|+.+.....++.-|.++.....+
T Consensus       133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~  165 (262)
T COG3823         133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT  165 (262)
T ss_pred             ceeeec--CCcceEeeCCceEEEecCHHHhhhcce
Confidence            444443  455566666666777777765544433

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=92.47  E-value=14  Score=37.75  Aligned_cols=76  Identities=20%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC----CCceeeeeec------cCCcceeEEEEec-CCEEEEE
Q 012996          218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGMHIIGSLS------DHSKAVTCLAYST-GDLLISG  286 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~------~~~~~v~~~~~~~-~~~l~s~  286 (451)
                      +..|.+++...-+.+++....||.|.++|-.+.+.....    .....+..+.      .+-.++..++||| +..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            456778888888889999999999999998876443222    1111111111      1122455688999 8888888


Q ss_pred             cCCCcEE
Q 012996          287 SEDGMVR  293 (451)
Q Consensus       287 ~~dg~i~  293 (451)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.19  E-value=0.89  Score=38.11  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=54.2

Q ss_pred             eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee-----ccCCcceeEEEEec-CCEEEEEc
Q 012996          214 NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      .+..+.++..+  ..++.++++-+.+|.+++||+.+.+.........++-..     ......|..+.++. |.-+++-+
T Consensus         8 ~i~Lgs~~~~l--~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls   85 (219)
T PF07569_consen    8 PIVLGSPVSFL--ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS   85 (219)
T ss_pred             cEecCCceEEE--EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence            34445555444  457888999999999999999987654333221111110     03556788888888 66666554


Q ss_pred             CCCcEEEEeCCCC
Q 012996          288 EDGMVRVWDPITH  300 (451)
Q Consensus       288 ~dg~i~iwd~~~~  300 (451)
                       +|..+.|+..-+
T Consensus        86 -ng~~y~y~~~L~   97 (219)
T PF07569_consen   86 -NGDSYSYSPDLG   97 (219)
T ss_pred             -CCCEEEeccccc
Confidence             578888886543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.14  E-value=5.8  Score=32.65  Aligned_cols=179  Identities=17%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEEEccCCcEEEEeeCCC------cEEEe-eCcch
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG------CVRIW-SLLTV  154 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg------~i~vw-d~~~~  154 (451)
                      ..+.-++. ..|+.+...+.|.+|++.  ..+.+.+|.. -+.|..+.++..|++|+|--.+.      .+++| +.+. 
T Consensus        21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~-   97 (215)
T PF14761_consen   21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS-   97 (215)
T ss_pred             ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh-
Confidence            34444432 344443556789999998  3345566653 38899999999999999864432      45554 2211 


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (451)
                                   .   .....++.. ...  |   .-++++..+..     ...-.+-.++...++.+++..|...-|+
T Consensus        98 -------------~---~~~~~~v~v-Ria--G---~~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~Ll  150 (215)
T PF14761_consen   98 -------------Q---KEENSPVRV-RIA--G---HRVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLL  150 (215)
T ss_pred             -------------h---cccCCcEEE-EEc--c---cccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEE
Confidence                         0   011112211 000  0   01111111111     1112233444667888999999555555


Q ss_pred             EEeCCCcEEEEEccCCCCCCCC---CCceeeeeeccCC--cceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996          235 AGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHS--KAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~--~~v~~~~~~~~~~l~s~~~dg~i~iwd~  297 (451)
                      +|+ ++.+.+|.+.........   .++.  ..+-.|.  -.+..+++. ++|+|..+. -.++++.+
T Consensus       151 Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe--~~l~~~~~~~~p~~v~ic-~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  151 VGC-GNKLVLFTLKYQTIQSEKFSFLDFE--RSLIDHIDNFKPTQVAIC-EGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             EEc-CCEEEEEEEEEEEEecccccEEech--hhhhheecCceEEEEEEE-eeEEEEecC-CEEEEEEE
Confidence            555 467888887664321100   0010  1111121  234556665 677777654 44666544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.05  E-value=8.9  Score=34.54  Aligned_cols=108  Identities=14%  Similarity=0.213  Sum_probs=50.7

Q ss_pred             CCcEEEEeccCC-----CEEEEEcCCCcc---eeeeccccCCe--eEEEEccCCcEEEEeeCC-----CcEEEeeCcchh
Q 012996           91 HGTYIAGGGQSG-----DIYMWEVASGRL---LKKWHAHYRAV--TCLVFSEDGSFLISGSED-----GCVRIWSLLTVF  155 (451)
Q Consensus        91 ~~~~l~~~~~dg-----~i~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~  155 (451)
                      ++.+++.|+.++     .+..||+.+.+-   ...+..-..+.  .+++. -++++.+.|+..     ..+..||+.+  
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~--  148 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLET--  148 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCC--
Confidence            456667776542     466777766542   11111111111  12222 246666666642     3577788754  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC----cEEEEEcCCCce
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRL  211 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~  211 (451)
                             .....+..+.... .....+...++  .+.+.|+.++    .+.+||+.+.+-
T Consensus       149 -------~~W~~~~~~p~~~-r~~~~~~~~~~--~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       149 -------QEWFELPDFPGEP-RVQPVCVKLQN--ELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             -------CCeeECCCCCCCC-CCcceEEEECC--EEEEEcCCCCccccceEEEecCCCee
Confidence                   2222222221111 11122223344  6777777654    356888877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=92.04  E-value=9.3  Score=34.74  Aligned_cols=65  Identities=15%  Similarity=0.148  Sum_probs=33.9

Q ss_pred             ccCcccCCCCCC----ccEEEEECCCCceeeeec------CCCCeeEEEECCCCcEEEEeccC-----------CCEEEE
Q 012996           49 SSQLREQPSASS----GSILYWSWSKPQVEVKSL------PAEPIKPIAANSHGTYIAGGGQS-----------GDIYMW  107 (451)
Q Consensus        49 ~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw  107 (451)
                      ++++.+.||.++    ..+.+||..+........      +.......+..-++++++.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            456666666432    357888887765442211      11111111222356667777653           247788


Q ss_pred             EcCCCc
Q 012996          108 EVASGR  113 (451)
Q Consensus       108 d~~~~~  113 (451)
                      |..+.+
T Consensus       165 d~~~~~  170 (341)
T PLN02153        165 NIADGK  170 (341)
T ss_pred             ECCCCe
Confidence            877653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.90  E-value=4.3  Score=30.54  Aligned_cols=105  Identities=10%  Similarity=0.103  Sum_probs=67.2

Q ss_pred             eEEEEeeCCCcEEEEEcCC--------CceeeeeecccceeEEEECC-----CCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996          190 ATIVSASEDRTCKVWSLLK--------GRLLRNIVFPSVIDAIALDP-----AEHVFYAGSRDGSIYIAALNAESPSTSS  256 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (451)
                      .-|++++..|.|.|++...        ...+..+.....|++++-.+     ....|+.|+ ...+..||.......   
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~---   86 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL---   86 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence            5678888889999998763        33556677788888887654     345566665 567899999876421   


Q ss_pred             CCceeeeeeccCCcceeEEEEec----CCEEEEEcCCCcEEEEeCCCCceEEE
Q 012996          257 YGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRM  305 (451)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~  305 (451)
                             -.+.-...|+++.+-.    ..-++..+.+..|.=||..-.+...+
T Consensus        87 -------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   87 -------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             -------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence                   1223346677776643    23444445566777777654444433

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.89  E-value=14  Score=36.38  Aligned_cols=162  Identities=20%  Similarity=0.257  Sum_probs=84.6

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee--eec-cccC------CeeEEEEccCCcEEEEeeC-CC---c
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWH-AHYR------AVTCLVFSEDGSFLISGSE-DG---C  145 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-~~~~------~v~~~~~~~~~~~l~s~~~-dg---~  145 (451)
                      -.+.|..+.|.++++.+++...+|.|.+||...+....  .+. .+..      -|.....-....++++.+. ++   .
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence            36789999999999999999999999999993332211  111 1111      1222211112345554444 32   3


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccccee---
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID---  222 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~---  222 (451)
                      .+++.+....       .....+.....+........|+...  ..++-- .+++|.+|++...+...++..+.-+.   
T Consensus       208 ykL~~l~~~~-------~~~~El~s~~~e~~~~~~s~f~Y~~--G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~  277 (670)
T PF10395_consen  208 YKLISLSNES-------SSIFELSSTILENFGLEDSKFCYQF--GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES  277 (670)
T ss_pred             EEEEEeccCC-------cceEEeehheeccCCcccceEEEeC--CEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccc
Confidence            5566651100       1111111111122222333343332  233333 67899999999888887776442221   


Q ss_pred             --EEEEC-CCCCEEEEEeCCCcEEEEEccCCC
Q 012996          223 --AIALD-PAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       223 --~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                        .+.+. |..+.++. +.++.|++.|+.-..
T Consensus       278 ~~~vSl~~~s~nRvLL-s~~nkIyLld~~~~s  308 (670)
T PF10395_consen  278 DDLVSLKPPSPNRVLL-SVNNKIYLLDLKFES  308 (670)
T ss_pred             ccceEeecCCCCeEEE-EcCCEEEEEeehhhh
Confidence              12332 23333333 346789999987653

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.81  E-value=11  Score=34.94  Aligned_cols=54  Identities=9%  Similarity=0.086  Sum_probs=26.7

Q ss_pred             eccCcccCCCCCC----------ccEEEEECCCCceeeeec-CCCCee-EEEEC-CCCcEEEEeccC
Q 012996           48 ASSQLREQPSASS----------GSILYWSWSKPQVEVKSL-PAEPIK-PIAAN-SHGTYIAGGGQS  101 (451)
Q Consensus        48 ~~~~~l~~~~~d~----------g~i~vw~~~~~~~~~~~~-~~~~v~-~~~~~-~~~~~l~~~~~d  101 (451)
                      -++...+.||...          ..+..||..+........ ...... ..+.. -++++.+.|+.+
T Consensus        83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            3456666666431          247778877655433221 111111 11122 467777887754

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=91.81  E-value=13  Score=35.98  Aligned_cols=226  Identities=15%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-----cceeeec---cccCCeeEEEEcc-----CCcEEEEe--eCCC-
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-----RLLKKWH---AHYRAVTCLVFSE-----DGSFLISG--SEDG-  144 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~v~~~~~~~-----~~~~l~s~--~~dg-  144 (451)
                      ..-..++..|.|+.++.+..+|.+.||-++..     .....+.   .....|.+++|-.     +...|+.-  ...+ 
T Consensus        44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~  123 (504)
T PF10433_consen   44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR  123 (504)
T ss_dssp             TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred             cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence            34567889999999999999999999998771     0111111   1256778888874     22333332  2222 


Q ss_pred             -cEEEee--Ccchhhhhhhhcccccceecc-cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--C-ceeeeeec
Q 012996          145 -CVRIWS--LLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--G-RLLRNIVF  217 (451)
Q Consensus       145 -~i~vwd--~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~-~~~~~~~~  217 (451)
                       .+..|+  ..........   .......+ ..+..+ .-+.-.|.+. ..++.++. +.+.+-+...  + .....+..
T Consensus       124 ~~~~~y~w~~~~~l~~~~~---~~~~~~~l~~~~~~p-~~LIPlp~~~-ggllV~~~-~~i~y~~~~~~~~~~~~~~~~~  197 (504)
T PF10433_consen  124 THLVTYEWSLDDGLNHVIS---KSTLPIRLPNEDELP-SFLIPLPNPP-GGLLVGGE-NIIIYKNHLIGSGDYSFLSIPS  197 (504)
T ss_dssp             EEEEEEE--------EETT---TTEEEE--EEEE-TT-EEEEEE-TTT--SEEEEES-SEEEEEE------TTEEEEE--
T ss_pred             ceeEEEeeecccccceeee---eccccccccccCCCc-cEEEEcCCCC-cEEEEECC-EEEEEecccccccccccccccC
Confidence             234443  3221110000   00000000 011112 1111123322 23333332 2232222111  1 11122221


Q ss_pred             -----ccceeEEE-------ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCC--E
Q 012996          218 -----PSVIDAIA-------LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGD--L  282 (451)
Q Consensus       218 -----~~~i~~~~-------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~--~  282 (451)
                           ..-+.+..       ...++..++.+..+|.++...+.....       ......-+. ....+++.+-...  +
T Consensus       198 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~  270 (504)
T PF10433_consen  198 PPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDY  270 (504)
T ss_dssp             H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--E
T ss_pred             CccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEE
Confidence                 12233333       345788899999999999988776421       111111122 4556677776644  8


Q ss_pred             EEEEcC--CCcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          283 LISGSE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       283 l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      |+.||.  |+.+.-|....-+.+.++.. -+||.++++.+
T Consensus       271 lf~gs~~gds~l~~~~~~~l~~~~~~~N-~~Pi~D~~v~~  309 (504)
T PF10433_consen  271 LFVGSEFGDSQLLQISLSNLEVLDSLPN-WGPIVDFCVVD  309 (504)
T ss_dssp             EEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-
T ss_pred             EEEEEecCCcEEEEEeCCCcEEEEeccC-cCCccceEEec
Confidence            888876  55566666555566666654 67999999864

...

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.32  E-value=11  Score=34.02  Aligned_cols=103  Identities=13%  Similarity=0.202  Sum_probs=49.9

Q ss_pred             ccCcccCCCCCC----ccEEEEECCCCcee--eeecC--CCCe--eEEEECCCCcEEEEecc-----CCCEEEEEcCCCc
Q 012996           49 SSQLREQPSASS----GSILYWSWSKPQVE--VKSLP--AEPI--KPIAANSHGTYIAGGGQ-----SGDIYMWEVASGR  113 (451)
Q Consensus        49 ~~~~l~~~~~d~----g~i~vw~~~~~~~~--~~~~~--~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~  113 (451)
                      ++...+.||.++    ..+..+|+.+....  .....  ..+.  .+++. -++.+.+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            456666666542    35666777665531  11111  1111  12222 24666677664     2358888887654


Q ss_pred             ce--eeeccccCCeeEEEEccCCcEEEEeeCCCc----EEEeeCcc
Q 012996          114 LL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGC----VRIWSLLT  153 (451)
Q Consensus       114 ~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~----i~vwd~~~  153 (451)
                      -.  ..+... ......+...++++.+.|+.++.    +.+||+.+
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence            22  222111 11122222335777777776543    45777754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.27  E-value=8.7  Score=32.89  Aligned_cols=239  Identities=12%  Similarity=0.030  Sum_probs=138.8

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ......++-.|||..-.++...|.|--.|..+|+....--+....-..|...|||..-++-+.. -|.-.|-++...   
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---  136 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---  136 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---
Confidence            4566788889999988888888899999999998877666666667788889988776664443 444455433210   


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEe
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~  237 (451)
                           .........-........|.+.+  ++-+++.. |.---.|..+ ..+..+.  .....+.+|..|+|..-++.-
T Consensus       137 -----t~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasl  207 (353)
T COG4257         137 -----TRFPLPLEHADANLETAVFDPWG--NLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASL  207 (353)
T ss_pred             -----EEeecccccCCCcccceeeCCCc--cEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEec
Confidence                 00111122223455666777776  66666652 2111122211 1222222  344567889999999999888


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee--cCCCCee
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVN  314 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~  314 (451)
                      .+..|-..|......       +.+..-......-..+--+| +..-++-...+.+.-+|..+.. -.++.  +....-.
T Consensus       208 agnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpy  279 (353)
T COG4257         208 AGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPY  279 (353)
T ss_pred             cccceEEcccccCCc-------ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcc
Confidence            888888777766532       11111112122333444456 8888887778888888866543 33333  3333444


Q ss_pred             EEEEEecCceeeeccCCCCcccccc
Q 012996          315 NILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       315 ~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ++.....++.-.+=-..|.|.-+|.
T Consensus       280 s~rVD~~grVW~sea~agai~rfdp  304 (353)
T COG4257         280 SMRVDRHGRVWLSEADAGAIGRFDP  304 (353)
T ss_pred             eeeeccCCcEEeeccccCceeecCc
Confidence            5555555544433333344444443

>PLN02153 epithiospecifier protein

Probab=91.21  E-value=11  Score=34.15  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=13.3

Q ss_pred             CCcEEEEeeCC-----CcEEEeeCcc
Q 012996          133 DGSFLISGSED-----GCVRIWSLLT  153 (451)
Q Consensus       133 ~~~~l~s~~~d-----g~i~vwd~~~  153 (451)
                      ++++++.|+.+     ..+.+||+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCC
Confidence            46677777753     2467788754

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=91.09  E-value=20  Score=36.81  Aligned_cols=250  Identities=12%  Similarity=0.024  Sum_probs=124.9

Q ss_pred             EECCCCcEEEEeccCCCEEEEEcCCCcc-------e--eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           87 AANSHGTYIAGGGQSGDIYMWEVASGRL-------L--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        87 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      .+-++...+++-+.+|.|+-.++.+...       .  ..++. ...+..+........++..+..|.+...........
T Consensus       491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~  569 (800)
T TIGR01063       491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA  569 (800)
T ss_pred             hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Confidence            3445566677778899888776543221       1  11222 234444444445556777777788776655332211


Q ss_pred             hhhhcccccce---ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-------eeeeecccceeEEEEC
Q 012996          158 CESQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-------LRNIVFPSVIDAIALD  227 (451)
Q Consensus       158 ~~~~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~i~~~~~~  227 (451)
                      ..  ......+   ..+.....-+..+.+..-.....++..+.+|.++-.++..-..       ...+.....+..+...
T Consensus       570 ~r--~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~  647 (800)
T TIGR01063       570 SR--TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLT  647 (800)
T ss_pred             Cc--CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEe
Confidence            00  0111111   1222222233344433222226889999999999887643221       1122223444444444


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-------
Q 012996          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------  299 (451)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-------  299 (451)
                      .....++..+..|.+..+....-..............+.. ...|.++..-+ +..++..+..|.++...+..       
T Consensus       648 ~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~  726 (800)
T TIGR01063       648 SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG  726 (800)
T ss_pred             CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC
Confidence            4556677778888877776654322111111111122322 23344444334 55788888899888776432       


Q ss_pred             CceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          300 HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       300 ~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ++-+..++  ...+.+..+....+...++..+.+|.+..+...
T Consensus       727 ~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~  769 (800)
T TIGR01063       727 GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ  769 (800)
T ss_pred             CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence            22223332  222344444444444456666667766555543

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.06  E-value=12  Score=33.95  Aligned_cols=71  Identities=20%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             ccceeEEEECC-------CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996          218 PSVIDAIALDP-------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (451)
Q Consensus       218 ~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d  289 (451)
                      ...+..+.|..       .+.+|++....+.|....+......     ......+......+..+++.| |.+.++-+.+
T Consensus       252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~  326 (331)
T PF07995_consen  252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-----TEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD  326 (331)
T ss_dssp             T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-----EEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred             ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-----cceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence            34556666643       4456666666678888887644210     011112234445889999999 8888877778


Q ss_pred             CcEE
Q 012996          290 GMVR  293 (451)
Q Consensus       290 g~i~  293 (451)
                      |.|.
T Consensus       327 G~iy  330 (331)
T PF07995_consen  327 GKIY  330 (331)
T ss_dssp             TTEE
T ss_pred             CeEe
Confidence            8764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.91  E-value=10  Score=39.92  Aligned_cols=25  Identities=16%  Similarity=0.131  Sum_probs=23.0

Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          227 DPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      ++++..++++..||.+.+||...+.
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g~  267 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSGK  267 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCCc
Confidence            7789999999999999999999864

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.83  E-value=3.6  Score=42.91  Aligned_cols=157  Identities=11%  Similarity=0.152  Sum_probs=91.2

Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc--------cCCcEEEEeeCCCcEEEeeCcchh
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--------EDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      ..+-+-|.=+..-. +.|+.+.+|+.+++.....+.+-...|..+..-        |.=++++..+.--.|.++-+.-..
T Consensus        82 ~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            34444443222222 557889999999988787777777777666542        222444444444567777653211


Q ss_pred             hhhhhhcccccce--ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc----CCC---c--------------ee
Q 012996          156 EECESQRASHLYL--HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL----LKG---R--------------LL  212 (451)
Q Consensus       156 ~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~----~~~---~--------------~~  212 (451)
                      ...    ......  ..+......|.++....+|  +.++ ++.||.  +|.+    ..+   +              .+
T Consensus       161 ~~~----~~~~f~~~~~i~~dg~~V~~I~~t~nG--RIF~-~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  161 FTG----ELSIFNTSFKISVDGVSVNCITYTENG--RIFF-AGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             ccC----cccccccceeeecCCceEEEEEeccCC--cEEE-eecCCC--EEEEEEeccCchhhcccccccCchhHHHHhh
Confidence            100    001111  1222335567788755565  4544 555664  4433    111   1              00


Q ss_pred             eee-----ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          213 RNI-----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       213 ~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      .++     .+..+|..++++..-..+++-+..|.|.+||+...
T Consensus       232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            011     13468999999999999999999999999999874

>PLN02193 nitrile-specifier protein

Probab=90.79  E-value=16  Score=35.03  Aligned_cols=61  Identities=5%  Similarity=-0.019  Sum_probs=32.5

Q ss_pred             eEEEEeeCCC-----cEEEEEcCCCceeeeee-----cccceeEEEECCCCCEEEEEeCC----CcEEEEEccCCC
Q 012996          190 ATIVSASEDR-----TCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEHVFYAGSRD----GSIYIAALNAES  251 (451)
Q Consensus       190 ~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~  251 (451)
                      .+++.|+.++     .+..||+.+.+-...-.     ....-..++. -++++++.++.+    ..+.+||+.+..
T Consensus       280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCE
Confidence            5666766543     46778877654322111     0011111222 256677777655    458889887753

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.77  E-value=12  Score=33.42  Aligned_cols=238  Identities=8%  Similarity=0.002  Sum_probs=113.7

Q ss_pred             cCcccCCCCCCccEEEEECCCC-ceeeeecCCCCeeEEEECCCCcEEEEec-cCCCEEEEEcCCCcc-------------
Q 012996           50 SQLREQPSASSGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRL-------------  114 (451)
Q Consensus        50 ~~~l~~~~~d~g~i~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-------------  114 (451)
                      +++++.|..+ |...+ +.+.. ....+..+...|+++...+.-+.|++-+ ....++++++..-..             
T Consensus        13 ~~~lL~GTe~-Gly~~-~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       13 GKWLLVGTEE-GLYVL-NISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             CcEEEEEeCC-ceEEE-EcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            3567777775 55444 45532 3445566778999999998777665544 334499999843321             


Q ss_pred             --eeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc----cCCcCceeEEEEeecC
Q 012996          115 --LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF----TGHTLRITDIVIGYGG  187 (451)
Q Consensus       115 --~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~  187 (451)
                        ....-+|............ ...++++....+|.++........       ......+    ..-..++..+..+.+.
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~-------f~~~k~~~~~~~~~~~~~~~~~~~~~~  163 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKK-------FKLFKSKFLFPLISPVPVFVELVSSSF  163 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhh-------hhhhcccccccCCCCccceEeeecccc
Confidence              0111133333333333321 223445555567777655331111       1111110    0112233333333332


Q ss_pred             CeeEEEEeeCCCcEEEEEcCC--Ccee----eeeecc---cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996          188 VSATIVSASEDRTCKVWSLLK--GRLL----RNIVFP---SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~--~~~~----~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (451)
                      ....++.|+..+...++++..  ....    ......   .++....+ +++.+|+ +..+ ...+.|......      
T Consensus       164 ~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Ll-c~~~-~~v~Vn~~G~~~------  234 (302)
T smart00036      164 ERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLL-CYDE-FGVFVNLYGKRR------  234 (302)
T ss_pred             cceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEE-EECc-EEEEEeCCCCcc------
Confidence            225666776643344444432  1100    000111   22323333 3344443 3333 344445443110      


Q ss_pred             ceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          259 MHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                       .....+. -...+.++++. ..+|++-+.+ .|.|+++.+++.++++...
T Consensus       235 -~r~~~l~-w~~~p~~~~~~-~pyll~~~~~-~ievr~l~~~~l~q~i~~~  281 (302)
T smart00036      235 -SRNPILH-WEFMPESFAYH-SPYLLAFHDN-GIEIRSIKTGELLQELADR  281 (302)
T ss_pred             -ccceEEE-cCCcccEEEEE-CCEEEEEcCC-cEEEEECCCCceEEEEecC
Confidence             0011111 23455677777 4667666654 4999999999999988753

Unpublished observations.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.66  E-value=9.5  Score=33.35  Aligned_cols=117  Identities=8%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe------CCCcEEEEEccCCCCCCCCCCceeeee-e-ccC
Q 012996          198 DRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS------RDGSIYIAALNAESPSTSSYGMHIIGS-L-SDH  268 (451)
Q Consensus       198 d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~  268 (451)
                      -..|++||..+.+-...-. ..+.|+++.|..+.+.++.|.      ....+..||+.+..       +..+.. . ..-
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------w~~~~~~~s~~i   87 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------WSSLGGGSSNSI   87 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------eeecCCcccccC
Confidence            3458999987665443332 567899999987777776664      34568889988764       111111 1 123


Q ss_pred             CcceeEEEEec---CCEEEEEc-CCC--cEEEEeCCCCceEEE-eecCCCCeeEEEEEec
Q 012996          269 SKAVTCLAYST---GDLLISGS-EDG--MVRVWDPITHNIVRM-FRLAKGPVNNILVVRR  321 (451)
Q Consensus       269 ~~~v~~~~~~~---~~~l~s~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~  321 (451)
                      .++|+.+.+..   .++.++|. .+|  .|..||=.+...+.. .......|..+.+-|-
T Consensus        88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence            47788887754   44555554 333  477777555554444 2222445666655443

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.41  E-value=12  Score=33.22  Aligned_cols=243  Identities=14%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             CcEEEEeccCCCEEEEEcCC--CcceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhh----hhccc
Q 012996           92 GTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECE----SQRAS  164 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~----~~~~~  164 (451)
                      +++|+.|+.+| +++.++..  ++..+.  .+...|+++...+..+.|++-+ ....++++++........    .....
T Consensus        13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~   89 (302)
T smart00036       13 GKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI   89 (302)
T ss_pred             CcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence            36899999988 55556554  233333  3466899999998766666544 334599999965443110    00000


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC----ceeee-----eecccceeEEEECCC--CCEE
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRN-----IVFPSVIDAIALDPA--EHVF  233 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~-----~~~~~~i~~~~~~~~--~~~l  233 (451)
                      .......-+|.....-..+.... ...++++....+|.++.....    .....     ...+.++..+..+++  ...+
T Consensus        90 ~~~~~~~~~~tkGc~~~~v~~~~-~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (302)
T smart00036       90 RKNVLTKIPDTKGCHLCAVVNGK-RSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI  168 (302)
T ss_pred             cccceEeCCcCCceEEEEEEcCC-CcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence            00111122333333333333332 234455556667777644322    11111     112233444444443  5678


Q ss_pred             EEEeCCCcEEEEEccC--CCCCCCCCCceeeeeeccCC-cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceE--EEeec
Q 012996          234 YAGSRDGSIYIAALNA--ESPSTSSYGMHIIGSLSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV--RMFRL  308 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~  308 (451)
                      .+|+..+...++++..  .......  ....  ..... .++.......+.+|++-  |....+-|.......  ..+.-
T Consensus       169 cvG~~~~~~~~~~~~~~~~~~~d~s--l~~~--~~~~~~~p~~i~~l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~w  242 (302)
T smart00036      169 CIGSDKGGGDVVQFHESLVSKEDLS--LPFL--SEETSLKPISVVQVPRDEFLLCY--DEFGVFVNLYGKRRSRNPILHW  242 (302)
T ss_pred             EEEEcCCCCeEEEEeeccccccccc--cccc--ccccccCceEEEEECCCeEEEEE--CcEEEEEeCCCCccccceEEEc
Confidence            8887753455555533  1100000  0000  00111 34444444335444443  333444454320221  12222


Q ss_pred             CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~  348 (451)
                       .....++++..  .||..-+ +..|.++++.++.+.+.+
T Consensus       243 -~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~i  278 (302)
T smart00036      243 -EFMPESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQEL  278 (302)
T ss_pred             -CCcccEEEEEC--CEEEEEc-CCcEEEEECCCCceEEEE
Confidence             33456666663  5666554 455999999877654433

Unpublished observations.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.22  E-value=11  Score=35.52  Aligned_cols=185  Identities=17%  Similarity=0.219  Sum_probs=0.0

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEc-------CCCcceeee-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEV-------ASGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-------~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                      .....+...|.-.+... ..|..++||+.       .++.....+ .++...+.++        ++.....|.|..|+- 
T Consensus        26 ~~~~~~gi~~e~g~Aw~-~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~-   95 (422)
T PF08801_consen   26 QSPCSMGIFPEIGRAWI-VVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWES-   95 (422)
T ss_dssp             TTS-EEEEE-TTSEEEE-EETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES--
T ss_pred             ccceEEEEEcccCEEEE-EECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEeccc-


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCE
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (451)
                                -........... ..+..+.+..                    +..++.......-.....+.-.+.|+.
T Consensus        96 ----------I~~~l~~~t~~~-i~l~gv~~~~--------------------l~~~e~~~~~~~~~~~~~I~~ts~GRi  144 (422)
T PF08801_consen   96 ----------ISHLLVLATPSQ-ISLLGVSYSE--------------------LLSGELSTSLTNVEPSGFIVSTSTGRI  144 (422)
T ss_dssp             ----------TT-TT--EEEE---------------------------------------EEEEEEETTTEEEEETT--E
T ss_pred             ----------chhhhhcCcccc-ccccccceee--------------------ecCCceEEECCCCceEEEEEECCCCeE


Q ss_pred             EEEEeCC-CcEEEEEccCCCCCCCCCCceeeee-------eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          233 FYAGSRD-GSIYIAALNAESPSTSSYGMHIIGS-------LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       233 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      +..+-.| +.++-....................       .......|.++...+ .+.+++.+.+|.|.+|++..+...
T Consensus       145 f~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~  224 (422)
T PF08801_consen  145 FFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGST  224 (422)
T ss_dssp             EEEEE-TTS-EEEEE-TT-----------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EE
T ss_pred             EEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCc


Q ss_pred             EEe
Q 012996          304 RMF  306 (451)
Q Consensus       304 ~~~  306 (451)
                      ...
T Consensus       225 ~~~  227 (422)
T PF08801_consen  225 LVS  227 (422)
T ss_dssp             EEE
T ss_pred             eee

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.21  E-value=14  Score=33.40  Aligned_cols=159  Identities=16%  Similarity=0.220  Sum_probs=83.8

Q ss_pred             cCCeeEEEEccCCcEEEEeeCCCc------EEEeeCcchhh-hhhhhcccccceecccC-----CcCceeEEEEeecCCe
Q 012996          122 YRAVTCLVFSEDGSFLISGSEDGC------VRIWSLLTVFE-ECESQRASHLYLHSFTG-----HTLRITDIVIGYGGVS  189 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~dg~------i~vwd~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~  189 (451)
                      -+.+..+.+.+++..+++.+.+|.      +..+++..... ...........+..-.+     ......+|++.+++  
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g--   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG--   96 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC--
Confidence            356788888865556777777777      55555532000 00000000001111111     11144577785555  


Q ss_pred             eEEEEeeCC------CcEEEEEcCCCceeeeee----------------cccceeEEEECCCCCEEEEEeCC-----C--
Q 012996          190 ATIVSASED------RTCKVWSLLKGRLLRNIV----------------FPSVIDAIALDPAEHVFYAGSRD-----G--  240 (451)
Q Consensus       190 ~~l~s~~~d------~~i~iwd~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~d-----g--  240 (451)
                      .++++.-.+      ..|..++.. |+....+.                .+....+++++|+|+.|+++...     +  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            677776667      788888865 65544442                23457899999999977766432     2  


Q ss_pred             c-------EEEEEccCCCCCCCCCCceeeeeecc-----CCcceeEEEEec-CCEEEE
Q 012996          241 S-------IYIAALNAESPSTSSYGMHIIGSLSD-----HSKAVTCLAYST-GDLLIS  285 (451)
Q Consensus       241 ~-------i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~l~s  285 (451)
                      .       ++++..........  ..+....+..     ....|+.+.+-+ +++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       45554443211000  0122222222     456788888888 665554

>PRK05560 DNA gyrase subunit A; Validated

Probab=90.11  E-value=25  Score=36.24  Aligned_cols=249  Identities=12%  Similarity=-0.013  Sum_probs=122.8

Q ss_pred             CCCCcEEEEeccCCCEEEEEcCCCcc---------eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           89 NSHGTYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        89 ~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      -++...+++-+.+|.|+--.+.+...         ...++.. ..+..+........|+..+..|.+....+....... 
T Consensus       495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~-  572 (805)
T PRK05560        495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS-  572 (805)
T ss_pred             cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC-
Confidence            45566777778889888776543221         1112222 334344344445567777777887766554321110 


Q ss_pred             hhcccccce---ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-------ceeeeeecccceeEEEECCC
Q 012996          160 SQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPA  229 (451)
Q Consensus       160 ~~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~  229 (451)
                       .......+   ..+.....-+..+.+........++..+.+|.++--++..-       .....+.....+..+.....
T Consensus       573 -~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~  651 (805)
T PRK05560        573 -RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG  651 (805)
T ss_pred             -cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence             00111111   12222222334444432112268899999999887765432       22222233344444444455


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-------Cc
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------HN  301 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-------~~  301 (451)
                      ...++..+..|.+..+....-..............+.....-+..+.+.+ +.+++..+..|.++...+..       ++
T Consensus       652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k  731 (805)
T PRK05560        652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK  731 (805)
T ss_pred             CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence            56777788889888777654322111111122223333223333444444 34788888899888776432       12


Q ss_pred             eEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          302 IVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       302 ~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      -+..++  ...+.+-.+........++..+.+|.+..++..
T Consensus       732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~  772 (805)
T PRK05560        732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS  772 (805)
T ss_pred             cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence            222222  222344433333333445555666766555543

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.00  E-value=25  Score=36.02  Aligned_cols=67  Identities=12%  Similarity=-0.002  Sum_probs=50.8

Q ss_pred             CcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe----ec---------------CCCCeeEEEEEecCceeeec
Q 012996          269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF----RL---------------AKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       269 ~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~---------------~~~~v~~l~~s~~~~~l~~~  328 (451)
                      ...|.++.... +.+++..-.||+|.++|..+.+.+...    ..               +..++-.++|||.+..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            35677888777 889999999999999998887655444    10               11134468899999999998


Q ss_pred             cCCCCcc
Q 012996          329 SFSNPHT  335 (451)
Q Consensus       329 s~d~~i~  335 (451)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=89.04  E-value=3.6  Score=41.05  Aligned_cols=140  Identities=13%  Similarity=0.197  Sum_probs=79.1

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEec---ceEeeccCcccCCCCCCccEEEEECC----CCceeeeec-----
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVG---QRFLASSQLREQPSASSGSILYWSWS----KPQVEVKSL-----   78 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~l~~~~~d~g~i~vw~~~----~~~~~~~~~-----   78 (451)
                      .|+.+.+||+..+...+.+.......-.|.-+.   ..|.+.-+.++..+.. ..+.++-+.    +++......     
T Consensus       100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~-~e~~ilgvs~d~~T~Els~fnTgl~vs  178 (1263)
T COG5308         100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATE-KEVMILGVSKDTKTGELSLFNTGLVVS  178 (1263)
T ss_pred             cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhh-heeeEEEEEeccccceeEEEecceEEe
Confidence            578999999997776655543332222222221   1233333333333333 566666543    333332221     


Q ss_pred             -CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC----C----c-------------cee---eeccccCCeeEEEEccC
Q 012996           79 -PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS----G----R-------------LLK---KWHAHYRAVTCLVFSED  133 (451)
Q Consensus        79 -~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~----~-------------~~~---~~~~~~~~v~~~~~~~~  133 (451)
                       .+-.|.|+.-+.+|+.+++|..|  +.+|.+.-    +    +             .+-   .+.-|...|..++....
T Consensus       179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs  256 (1263)
T COG5308         179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS  256 (1263)
T ss_pred             ccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc
Confidence             34578899888899999988776  67776521    0    0             000   11235566777777766


Q ss_pred             CcEEEEeeCCCcEEEeeCcc
Q 012996          134 GSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus       134 ~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ...|.+-+....|+-|.+..
T Consensus       257 Rg~ly~Lr~kS~Vray~itk  276 (1263)
T COG5308         257 RGLLYVLRKKSAVRAYSITK  276 (1263)
T ss_pred             ccceeeecccceeeeEeeec
Confidence            66677777777777777643

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=88.79  E-value=5.4  Score=39.60  Aligned_cols=137  Identities=15%  Similarity=0.188  Sum_probs=74.7

Q ss_pred             EeecCCCCCCeEEEECccCcee-eeeecCCCCCCceEEecceEee--------ccCcccCCCCCCccEEEEECCCCceee
Q 012996            5 IASSSVADTGIGCWDLESGAEQ-LRYKSCASPPHGLACVGQRFLA--------SSQLREQPSASSGSILYWSWSKPQVEV   75 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--------~~~~l~~~~~d~g~i~vw~~~~~~~~~   75 (451)
                      +..|+ .++.|.++.-..+... ............+.++.  +++        +|...+.+..-+|.   ||.. +... 
T Consensus       550 ic~gt-q~ssisissss~~s~ke~~~~~~spe~~~v~~l~--~ss~Slgagl~dgt~a~y~rap~gS---wd~e-p~~~-  621 (925)
T KOG3522|consen  550 ICLGT-QTSSISISSSSLDSIKEVTSEPPSPEHESVKLLL--FSSGSLGAGLIDGTLAVYGRAPSGS---WDGE-PNIS-  621 (925)
T ss_pred             ccccC-ccceeEEeeccCCcccceeccCCCCchhhhhhhh--ccccccccCccCCccccccCCCCCC---CCCC-Cccc-
Confidence            45677 8899999986623222 12222222223333333  222        22222222222233   5544 2211 


Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec---cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                      ......+|...++..|   ++.|+.+|.|.++...+......+.   .|...|+++.+..++-+++-++.| .++.++.+
T Consensus       622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte  697 (925)
T KOG3522|consen  622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE  697 (925)
T ss_pred             cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence            1223467888887633   4556788999999987765555443   455689999998777666655555 55665554


Q ss_pred             c
Q 012996          153 T  153 (451)
Q Consensus       153 ~  153 (451)
                      +
T Consensus       698 t  698 (925)
T KOG3522|consen  698 T  698 (925)
T ss_pred             c
Confidence            4

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.62  E-value=32  Score=35.40  Aligned_cols=167  Identities=13%  Similarity=0.066  Sum_probs=94.3

Q ss_pred             cCCCCeeEEEEC---C----CCcEEEEeccCCCEEEEEcCCC---------------cceeeecc---ccCCeeEEEEcc
Q 012996           78 LPAEPIKPIAAN---S----HGTYIAGGGQSGDIYMWEVASG---------------RLLKKWHA---HYRAVTCLVFSE  132 (451)
Q Consensus        78 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~v~~~~~~~  132 (451)
                      ....+|..|.|.   .    ..++|++=. ...+.|+...-.               .++..+..   ...+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356789999997   2    224666643 456777772111               22333322   234677899999


Q ss_pred             -CCcEEEEeeCCCcEEEeeCcchhhhhh-hhcccccceecc--c-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996          133 -DGSFLISGSEDGCVRIWSLLTVFEECE-SQRASHLYLHSF--T-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (451)
Q Consensus       133 -~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~  207 (451)
                       +...||.....|...||++........ ...........+  . .....-..+.|..+.  ..|+.++. ..+.++|+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~--~~lLv~~r-~~l~~~d~~  232 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS--NRLLVCNR-SKLMLIDFE  232 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC--CEEEEEcC-CceEEEECC
Confidence             567899999999999999922111000 000000000111  0 011233467776665  56666554 468999998


Q ss_pred             CCceee---eeecccceeEEEECCC--CCEEEEEeCCCcEEEEEccCC
Q 012996          208 KGRLLR---NIVFPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       208 ~~~~~~---~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      +.....   .......|..+.-+|.  +..|+. + ...|...++...
T Consensus       233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-T-s~eiiw~~~~~~  278 (765)
T PF10214_consen  233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-T-SKEIIWLDVKSS  278 (765)
T ss_pred             CCCccchhccCCChhheeeEEecCCccceEEEE-e-cCeEEEEEccCC
Confidence            776533   2224567888888886  333333 2 356777777763

These proteins are found in fungi.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.37  E-value=17  Score=32.03  Aligned_cols=172  Identities=10%  Similarity=0.158  Sum_probs=87.0

Q ss_pred             ccEEEEECCCCceeeeec-------CCCCeeEEEECCCC-----cEEE-EeccCCCEEEEEcCCCcceeeeccc------
Q 012996           61 GSILYWSWSKPQVEVKSL-------PAEPIKPIAANSHG-----TYIA-GGGQSGDIYMWEVASGRLLKKWHAH------  121 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~------  121 (451)
                      -.|.+||+.++++..+..       ....+..+.+....     .++. +=+..+.|.|+|+.+++..+.+..+      
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            478888988887654432       23456677775521     2332 3233457999999988655444321      


Q ss_pred             -------------cCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhh--hcc-cccceecccCCcCceeEEE
Q 012996          122 -------------YRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECES--QRA-SHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       122 -------------~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~-~~~~~~~~~~~~~~i~~i~  182 (451)
                                   ...+..++.+|   +++.|+-....+ -++|.+.+.......  ... ....+..+........+++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                         12355566654   555555554432 234444332111110  000 0111122221223556677


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCc---eeeeee-c---ccceeEEEECC--CCCEEEE
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGR---LLRNIV-F---PSVIDAIALDP--AEHVFYA  235 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~---~~~i~~~~~~~--~~~~l~~  235 (451)
                      +.+.|  .++++--..+.|..|+..+.-   ....+. .   -..+..+.+.+  +|.+.+.
T Consensus       193 ~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  193 IDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             EETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             ECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence            77776  888888899999999987621   122222 1   23467777777  5544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.31  E-value=1  Score=25.80  Aligned_cols=41  Identities=7%  Similarity=-0.112  Sum_probs=26.2

Q ss_pred             eccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEE
Q 012996           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA   88 (451)
Q Consensus        48 ~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~   88 (451)
                      |+++.+.++...++.|.++|..+...............+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            45666666666568999999987766554433344445544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=88.16  E-value=34  Score=35.23  Aligned_cols=245  Identities=12%  Similarity=0.091  Sum_probs=122.5

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCce---------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-----
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-----  111 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----  111 (451)
                      +-++...+++.+.+ |.|+--+...-..         .......+.+..+........++..+..|.++......     
T Consensus       492 li~~e~~~vllS~~-GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~  570 (800)
T TIGR01063       492 LIARENVVVTLSHN-GYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS  570 (800)
T ss_pred             ccCcceEEEEEcCC-CEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence            34455556666666 8887765542211         01111234555555555566666667778876665421     


Q ss_pred             ----Ccce---eeeccccCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          112 ----GRLL---KKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       112 ----~~~~---~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                          |..+   ..+.....-|.++...  .++.+++..+.+|.++-.++.......    ........+.. ...+..+.
T Consensus       571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~----r~G~~aiklke-~D~lv~v~  645 (800)
T TIGR01063       571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIR----SNGIIAIKLDD-GDELISVR  645 (800)
T ss_pred             cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhc----cCCcccccCCC-CCEEEEEE
Confidence                1222   1122222334445433  255678999999999998875432111    01111122222 33444444


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCC---------CceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLK---------GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (451)
                      .....  ..++..+..|.+..+....         |.....+.....|.++..-+++..++..+..|.+....+..-...
T Consensus       646 ~~~~~--d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~  723 (800)
T TIGR01063       646 LTSGD--DEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET  723 (800)
T ss_pred             EeCCC--CEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence            33333  4566666777766655432         111112223344555544445557888888998888876543221


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      ...........+......+..+.... ...++..+.+|.+..++..
T Consensus       724 ~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~  769 (800)
T TIGR01063       724 SRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ  769 (800)
T ss_pred             CCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence            11000111112333333444444444 5556666778887777654

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.87  E-value=10  Score=33.18  Aligned_cols=100  Identities=9%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee------CCCcEEEeeCcchhhhhhhhcccccceec-c-cC
Q 012996          102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS------EDGCVRIWSLLTVFEECESQRASHLYLHS-F-TG  173 (451)
Q Consensus       102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~-~~  173 (451)
                      ..|++||..+.+-...-.+-.+.|+++.|..+.+.++.|.      ....+..||+.+         ........ . ..
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~---------~~w~~~~~~~s~~   86 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN---------QTWSSLGGGSSNS   86 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC---------CeeeecCCccccc
Confidence            4599999877655444445678899999987777666664      355688899854         11111111 0 12


Q ss_pred             CcCceeEEEEeecCCeeEEEEee-CCC--cEEEEEcCCCc
Q 012996          174 HTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGR  210 (451)
Q Consensus       174 ~~~~i~~i~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~  210 (451)
                      -.++|..+.+......++.+.|. .++  .|..||=.+..
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~  126 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS  126 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence            34678777775444335555544 333  45666544333

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.76  E-value=13  Score=33.45  Aligned_cols=111  Identities=18%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             ccceeEEEECCCCCEEEEEeCCCc------EEEEEccCCCCCCCCCCceeeeeeccCCc--------ceeEEEEec-CCE
Q 012996          218 PSVIDAIALDPAEHVFYAGSRDGS------IYIAALNAESPSTSSYGMHIIGSLSDHSK--------AVTCLAYST-GDL  282 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~-~~~  282 (451)
                      -+.+..+.+.|++..+++.+.+|.      ++.+++.................+..-.+        ..-+|++.+ +.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788899877777777788887      76666655211000000011111111111        444788855 777


Q ss_pred             EEEEcCC------CcEEEEeCCCCceEEEee---------------cCCCCeeEEEEEecCceeeecc
Q 012996          283 LISGSED------GMVRVWDPITHNIVRMFR---------------LAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       283 l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      +++.-.+      ..|.-++.. |+.+..+.               ..+...-+|+++|+|+.|.++.
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            7776666      778888866 66655542               1234688999999999666554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.41  E-value=24  Score=32.56  Aligned_cols=197  Identities=12%  Similarity=0.059  Sum_probs=99.7

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC--
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP--   82 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~--   82 (451)
                      +.++. .+|.|.-.|..++..+....... ....+..-  .+..+|+ +..++.+ |.+..+|..+++......-...  
T Consensus        71 v~~~~-~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~--~~~~~G~-i~~g~~~-g~~y~ld~~~G~~~W~~~~~~~~~  144 (370)
T COG1520          71 VYVGT-RDGNIFALNPDTGLVKWSYPLLG-AVAQLSGP--ILGSDGK-IYVGSWD-GKLYALDASTGTLVWSRNVGGSPY  144 (370)
T ss_pred             EEEec-CCCcEEEEeCCCCcEEecccCcC-cceeccCc--eEEeCCe-EEEeccc-ceEEEEECCCCcEEEEEecCCCeE
Confidence            34445 68888888988888765443221 01111111  1344666 5555555 7888888877777766544331  


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc---CCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY---RAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEE  157 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~  157 (451)
                      +..-..-.++ .+..++.+|.+...|..+|+.+.......   ..+..-....++ .++.+..  ++.+.-.|..++...
T Consensus       145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~  222 (370)
T COG1520         145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLK  222 (370)
T ss_pred             EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEe
Confidence            1111112233 33333467888888888888766543221   111110011223 3444444  555555666443221


Q ss_pred             hhhhcccccceecccCCc-----CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc
Q 012996          158 CESQRASHLYLHSFTGHT-----LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP  218 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  218 (451)
                      .....     .. ..+..     ..+..-.+.-+   .-++.++.++.+...|..+++.+..+...
T Consensus       223 w~~~~-----~~-~~~~~~~~~~~~~~~~~v~v~---~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         223 WSQKV-----SQ-TIGRTAISTTPAVDGGPVYVD---GGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eeeee-----ec-ccCcccccccccccCceEEEC---CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            11000     00 00110     01111111122   23467778888999999999998888754

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.34  E-value=19  Score=35.56  Aligned_cols=70  Identities=21%  Similarity=0.322  Sum_probs=48.5

Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      ..+.++++.-+|.|.-++.+..||.|++|+....+.-... ....+-..+.|...|  |+++..|..+.-|.-
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheeec
Confidence            3566788888999999999999999999998655432211 122333456666544  667777777777754

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.21  E-value=17  Score=34.30  Aligned_cols=26  Identities=4%  Similarity=0.063  Sum_probs=17.3

Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEE
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVW  204 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iw  204 (451)
                      .|..+..++.|  ..++-.+.+|.+..+
T Consensus       105 eV~~vl~s~~G--S~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTG--SHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCC--ceEEEecCCeeEEEE
Confidence            45566666766  677777777765544

>PRK13684 Ycf48-like protein; Provisional

Probab=87.05  E-value=23  Score=32.08  Aligned_cols=150  Identities=11%  Similarity=0.066  Sum_probs=82.2

Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEE-EEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKV-WSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      ...+.++.+.+++  .+++ .+..|.+.. +|- .++.-....  ....++++.+.|++..+++| ..|.+++-..+.+.
T Consensus       172 ~g~~~~i~~~~~g--~~v~-~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDG--KYVA-VSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCC--eEEE-EeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence            5577888887765  4544 444554443 221 222222222  34678899999998877765 45766532222221


Q ss_pred             CCCCCCCceeeeee-ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCeeEEEEEecCceee
Q 012996          252 PSTSSYGMHIIGSL-SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLN  326 (451)
Q Consensus       252 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~  326 (451)
                      .      +..+..- ......+.++.+.+ +.. +.++.+|.|. .....++.......   -......+.|..++..++
T Consensus       247 s------W~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PRK13684        247 S------WSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV  318 (334)
T ss_pred             c------cccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence            0      1111110 11224577888888 554 4555677654 34455554444432   223577888887776666


Q ss_pred             eccCCCCccccc
Q 012996          327 LGSFSNPHTSSR  338 (451)
Q Consensus       327 ~~s~d~~i~iw~  338 (451)
                      + +..|.|.-|+
T Consensus       319 ~-G~~G~il~~~  329 (334)
T PRK13684        319 L-GQRGVLLRYV  329 (334)
T ss_pred             E-CCCceEEEec
Confidence            4 4667776555

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.01  E-value=22  Score=35.41  Aligned_cols=94  Identities=9%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             eeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996          221 IDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i  294 (451)
                      -..++|-|.|..+++-+.||     .|.++.-+.....      . ...-.+....+..++|+- ...++. ...+.|.+
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHG------e-f~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~l  320 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHG------E-FDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKL  320 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccCCcccC------C-ccccCCchhhhhhhhhhHHHHHHHH-hhcceEEE
Confidence            34589999999999977665     3555554332110      0 001112344566777876 444443 45677999


Q ss_pred             EeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996          295 WDPITHNIVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      |-..+..-.-.....-..+.-+.|+|..
T Consensus       321 wttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         321 WTTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEccceEEEEEEeecCCCcceeeecccc
Confidence            9876654333323333356667777744

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.81  E-value=28  Score=32.86  Aligned_cols=117  Identities=9%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc-----CCcCceeEEEEeec---
Q 012996          115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-----GHTLRITDIVIGYG---  186 (451)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~---  186 (451)
                      +..+...-...+.|+|.||+++|++--..|.|++++..+         .....+..+.     .......+|+++|+   
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~---------~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~   92 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPET---------GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQ   92 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCC---------CceeeeecCCceeccCCCCceeeEEECCCccc


Q ss_pred             -CCeeEEEEee----------CCCcEEEEEcCCC--------ceeeeee--cccceeEEEECCCCCEEEEEeCCC
Q 012996          187 -GVSATIVSAS----------EDRTCKVWSLLKG--------RLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       187 -~~~~~l~s~~----------~d~~i~iwd~~~~--------~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                       ..+.+|+...          ....|.-|.+...        ..+..+.  ....-..|.|.|+|.++++.+..+
T Consensus        93 ~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606        93 EKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             cCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.70  E-value=3.6  Score=40.30  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=43.8

Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCC---CCCCCC--Cc----eeeeee--------ccCCcceeEEEEec-----CCEEEE
Q 012996          228 PAEHVFYAGSRDGSIYIAALNAES---PSTSSY--GM----HIIGSL--------SDHSKAVTCLAYST-----GDLLIS  285 (451)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~--~~----~~~~~~--------~~~~~~v~~~~~~~-----~~~l~s  285 (451)
                      ++...++++..||.+.........   ......  ..    ..+..+        ......+..+++++     ..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            567788888889988888776521   100000  00    000000        01122333344433     678999


Q ss_pred             EcCCCcEEEEeCCCCceEEEee
Q 012996          286 GSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      .+.|+++|+||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02193 nitrile-specifier protein

Probab=86.23  E-value=32  Score=32.94  Aligned_cols=102  Identities=10%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             ccCcccCCCCCC----ccEEEEECCCCceeeeecC-----CCCeeEEEECCCCcEEEEeccCC-----CEEEEEcCCCcc
Q 012996           49 SSQLREQPSASS----GSILYWSWSKPQVEVKSLP-----AEPIKPIAANSHGTYIAGGGQSG-----DIYMWEVASGRL  114 (451)
Q Consensus        49 ~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  114 (451)
                      ++.+.+.+|.+.    ..+.+||..+.+.......     ...-.++.. -++++.+.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            455555665431    4578888877654432211     111112222 2466677776543     367788766542


Q ss_pred             eeee-----ccccCCeeEEEEccCCcEEEEeeCC----CcEEEeeCcc
Q 012996          115 LKKW-----HAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLT  153 (451)
Q Consensus       115 ~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~  153 (451)
                      ...-     ....... .+.. -+++.++.++.+    ..+.+||+.+
T Consensus       307 ~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t  352 (470)
T PLN02193        307 FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQ  352 (470)
T ss_pred             EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCC
Confidence            2110     0111111 1222 246677777655    3578888865

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.03  E-value=4.3  Score=23.10  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEE
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL  226 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~  226 (451)
                      ++++...++.|.++|..+++.+..+........++|
T Consensus         6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            444455688999999999888888775544555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.00  E-value=15  Score=31.23  Aligned_cols=148  Identities=10%  Similarity=0.035  Sum_probs=0.0

Q ss_pred             EEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeeccccCCeeEEEEcc------C
Q 012996           64 LYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE------D  133 (451)
Q Consensus        64 ~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------~  133 (451)
                      .+||..++... ......--+.+-.+-+||++|.+|+.   ...+++++......-..+.........=.|.|      |
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC


Q ss_pred             CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee
Q 012996          134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR  213 (451)
Q Consensus       134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  213 (451)
                      |+.|+.|+......-+-.................... .....----+...|+|  ++++.+..+.  .|||..+++.++
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG--~lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDG--NLFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc-cCccccCceEEEcCCC--CEEEEEcCCc--EEEeCCCCeEEe


Q ss_pred             eee
Q 012996          214 NIV  216 (451)
Q Consensus       214 ~~~  216 (451)
                      .+.
T Consensus       204 ~lP  206 (243)
T PF07250_consen  204 TLP  206 (243)
T ss_pred             eCC

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.26  E-value=5.4  Score=32.05  Aligned_cols=30  Identities=17%  Similarity=0.300  Sum_probs=24.5

Q ss_pred             CCeeEEEEccCC------cEEEEeeCCCcEEEeeCc
Q 012996          123 RAVTCLVFSEDG------SFLISGSEDGCVRIWSLL  152 (451)
Q Consensus       123 ~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~  152 (451)
                      ..|..++|||.|      -+|++.+.+|.|.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            378999999943      468888999999999863

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.01  E-value=9.9  Score=30.52  Aligned_cols=33  Identities=3%  Similarity=0.085  Sum_probs=27.1

Q ss_pred             CceeEEEEeecCC----eeEEEEeeCCCcEEEEEcCC
Q 012996          176 LRITDIVIGYGGV----SATIVSASEDRTCKVWSLLK  208 (451)
Q Consensus       176 ~~i~~i~~~~~~~----~~~l~s~~~d~~i~iwd~~~  208 (451)
                      ..+.+++|+|.|-    +-+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            4788999999553    36899999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	451
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-14
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-14
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-13
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-12
2h9l_A	329	Wdr5delta23 Length = 329		1e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-10
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		7e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-04

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 74   EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133
            ++  LP   +     + H  Y+A G + G I + E+ + R+      H +AV  + F+ D
Sbjct: 955  QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014
Query: 134  GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL--HSFTGHTLRITDIVIGYGGVSAT 191
            G  LIS SED  +++W+          Q   +++L  H  T    R+           + 
Sbjct: 1015 GKTLISSSEDSVIQVWNW---------QTGDYVFLQAHQETVKDFRLLQ--------DSR 1057
Query: 192  IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250
            ++S S D T KVW+++ GR+ R+       + + A+      F + S D +  I + +  
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 251  SPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
            SP         +  L  H+  V C A+S  G LL +G ++G +R+W+
Sbjct: 1118 SP---------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 74   EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133
            ++  LP   +     + H  Y+A G + G I + E+ + R+      H +AV  + F+ D
Sbjct: 962  QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1021
Query: 134  GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL--HSFTGHTLRITDIVIGYGGVSAT 191
            G  LIS SED  +++W+          Q   +++L  H  T    R+           + 
Sbjct: 1022 GKTLISSSEDSVIQVWNW---------QTGDYVFLQAHQETVKDFRLLQ--------DSR 1064
Query: 192  IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250
            ++S S D T KVW+++ GR+ R+       + + A+      F + S D +  I + +  
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 251  SPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
            SP         +  L  H+  V C A+S  G LL +G ++G +R+W+
Sbjct: 1125 SP---------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
           H   +  G +   + +W++ +G+ L     H  AV C+ +  DG  ++SG+ D  V++W 
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210
             T  E C         LH+  GHT R+    + + G+   +VS S D + +VW +  G 
Sbjct: 266 PET--ETC---------LHTLQGHTNRVYS--LQFDGIH--VVSGSLDTSIRVWDVETGN 310
Query: 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270
            +  +     + +  ++  +++  +G+ D ++ I  +       +   +  +   + H  
Sbjct: 311 CIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDIK------TGQCLQTLQGPNKHQS 363
Query: 271 AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR 304
           AVTCL ++  + +I+ S+DG V++WD  T   +R
Sbjct: 364 AVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIR 396

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 80  AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139
           +  ++ +A +  G  IA       + +W   +G+LL+    H  +V  + FS DG  + S
Sbjct: 16  SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 74
Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199
            S+D  V++W+           R   L L + TGH+  +  +     G   TI SAS+D+
Sbjct: 75  ASDDKTVKLWN-----------RNGQL-LQTLTGHSSSVRGVAFSPDG--QTIASASDDK 120
Query: 200 TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258
           T K+W+   G+LL+ +    S +  +A  P      + S D ++ +   N +        
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------- 171
Query: 259 MHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
             ++ +L+ HS +V  +A+S  G  + S S+D  V++W+
Sbjct: 172 --LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T            + L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT-----------GMCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED MV +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T            + L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT-----------GMCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA          Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED MV +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 150 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 196
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 197 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 92  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 152 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 198
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 199 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 85  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 145 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 191
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 192 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 128 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 174
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 175 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 64  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 124 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 170
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 171 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 69  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 129 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 175
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 176 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 128 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 174
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 175 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 73  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 133 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 179
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 180 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 67  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 127 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 173
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 174 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 103/227 (45%), Gaps = 19/227 (8%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           ++ +  +S G +   G   G++ +W++A+G   +++  H + V  + FS D   ++S S 
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  +++W+ L    EC+     +       GH   ++ +      +  TIVSAS D+T K
Sbjct: 493 DRTIKLWNTLG---ECK-----YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 203 VWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           VW+L   +L   +      +  +A+ P   +  +G +DG + +  L AE     S     
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL-AEGKKLYSL---- 599
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308
                + +  +  L +S     +  + +  +++WD  + +IV   ++
Sbjct: 600 -----EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV 641

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           +  +  +S G +   G   G + +W++ +G   +++  H + V  + FS D   ++SGS 
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  +++W+ L V   C+       Y      H+  ++ +       +  IVS   D+  K
Sbjct: 126 DKTIKLWNTLGV---CK-------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 203 VWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           VW+L   +L  N I     ++ + + P   +  +G +DG   +  LN         G H+
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE--------GKHL 227
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
                D    +  L +S     +  +    +++WD
Sbjct: 228 Y--TLDGGDIINALCFSPNRYWLCAATGPSIKIWD 260

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           +  +  +S G +   G   G + +W++ +G   +++  H + V  + FS D   ++SGS 
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  +++W+ L V   C+       Y      H+  ++ +       +  IVS   D+  K
Sbjct: 149 DKTIKLWNTLGV---CK-------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 203 VWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           VW+L   +L  N I     ++ + + P   +  +G +DG   +  LN         G H+
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE--------GKHL 250
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
                D    +  L +S     +  +    +++WD
Sbjct: 251 Y--TLDGGDIINALCFSPNRYWLCAATGPSIKIWD 283

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 130/306 (42%), Gaps = 33/306 (10%)
Query: 5   IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSIL 64
           +  S+  D  I  WD E+G  +   K        ++     F  S +L    SA   +I 
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS-----FDHSGKLLASCSADM-TIK 175
Query: 65  YWSWSKPQVEVKSLPAEP--IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122
            W +   +  ++++      +  ++   +G +I    +   I MWEV +G  +K +  H 
Sbjct: 176 LWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL---------HSFTG 173
             V  +  ++DG+ + S S D  VR+W + T  +EC+++   H ++          S++ 
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELREHRHVVECISWAPESSYSS 292
Query: 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV 232
            +          G     ++S S D+T K+W +  G  L  +V   + +  +       +
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV-------L 345
Query: 233 FYAGSRDGSIYIAALNAESPSTSSY-GMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDG 290
           F++G   G   ++  + ++     Y     + +L+ H   VT L +  T   +++GS D 
Sbjct: 346 FHSG---GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 291 MVRVWD 296
            V+VW+
Sbjct: 403 TVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 38/234 (16%)
Query: 82  PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141
           P+  +  +   + +    +   I +W+  +G   +    H  +V  + F   G  L S S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
            D  +++W     F+  E  R  H       GH   ++ + I   G    IVSAS D+T 
Sbjct: 170 ADMTIKLWD----FQGFECIRTMH-------GHDHNVSSVSIMPNG--DHIVSASRDKTI 216
Query: 202 KVWSLLKG-------------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI------ 242
           K+W +  G             R++R     ++I + + D    V+   +++         
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
           ++    + +P +S        S+S+ + + T  +   G  L+SGS D  +++WD
Sbjct: 277 HVVECISWAPESS------YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD 227
           ++ +GH   +T ++  +  V + +VSASED T KVW    G   R +      +  I+ D
Sbjct: 102 YALSGHRSPVTRVI--FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YSTGDLLISG 286
            +  +  + S D +I +             G   I ++  H   V+ ++    GD ++S 
Sbjct: 160 HSGKLLASCSADMTIKLWDFQ---------GFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210
Query: 287 SEDGMVRVWDPITHNIVRMF 306
           S D  +++W+  T   V+ F
Sbjct: 211 SRDKTIKMWEVQTGYCVKTF 230

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 21/239 (8%)
Query: 62  SILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH- 119
           S+  W+    Q + K L   + +  +A +     I  GG+   + +W V  G  +     
Sbjct: 90  SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSR 148
Query: 120 -AHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176
            AH   V+C+ FS   D   ++SG  D  V++W L           A+   +    GHT 
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL-----------ATGRLVTDLKGHTN 197
Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236
            +T + +   G  +   S+ +D   ++W L KG  L  +   + I+ I   P  +   A 
Sbjct: 198 YVTSVTVSPDG--SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAA 255
Query: 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295
           +  G I I  L  +         H  GS     + V+    + G  L SG  D ++RVW
Sbjct: 256 TEKG-IRIFDLENKDIIVELAPEH-QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW  +T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 51  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 111 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 158
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW  +T N
Sbjct: 279 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW  +T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
            +TCL F ++  ++I+G++D  +R++  +           +  +L   +GH   +  +  
Sbjct: 124 VITCLQFEDN--YVITGADDKXIRVYDSI-----------NKKFLLQLSGHDGGVWALKY 170
Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY--AGSR 238
            +GG+   +VS S DRT +VW + KG      VF    S +  + +   +++ Y   GSR
Sbjct: 171 AHGGI---LVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 239 DGSIYIAALNAESP--------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284
           D ++++  L  ES                T     + +G L  H  +V  ++   G++++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS-GHGNIVV 284
Query: 285 SGSEDGMVRVWD 296
           SGS D  + VWD
Sbjct: 285 SGSYDNTLIVWD 296

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-------ENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+   +  T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-------ENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+   +  T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
            +TCL F ++  ++I+G++D  +R++  +           +  +L   +GH   +  +  
Sbjct: 124 VITCLQFEDN--YVITGADDKMIRVYDSI-----------NKKFLLQLSGHDGGVWALKY 170
Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY--AGSR 238
            +GG+   +VS S DRT +VW + KG      VF    S +  + +   +++ Y   GSR
Sbjct: 171 AHGGI---LVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 239 DGSIYIAALNAESP--------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284
           D ++++  L  ES                T     + +G L  H  +V  ++   G++++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIVV 284
Query: 285 SGSEDGMVRVWD 296
           SGS D  + VWD
Sbjct: 285 SGSYDNTLIVWD 296

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 39/255 (15%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I+ +  +  G ++A G +   I +W++ + +++     H + +  L +   G  L+SGS 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG---GVSATIVSASEDR 199
           D  VRIW L T   +C                TL I D V       G    I + S DR
Sbjct: 186 DRTVRIWDLRT--GQCS--------------LTLSIEDGVTTVAVSPGDGKYIAAGSLDR 229
Query: 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY--------AGSRDGSIYIAAL---- 247
             +VW    G L+  +   +       D    V +        +GS D S+ +  L    
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 248 ---NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPITHNIV 303
              ++++P++ +  +  IG    H   V  +A +  D  ++SGS+D  V  WD  + N +
Sbjct: 290 NKSDSKTPNSGTCEVTYIG----HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Query: 304 RMFRLAKGPVNNILV 318
            M +  +  V ++ V
Sbjct: 346 LMLQGHRNSVISVAV 360

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASXIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW   T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 3   LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGS 62
           L IA+SS  D  I  WDLE+G +    KS  + P  +      F   SQ     +     
Sbjct: 92  LPIAASSSLDAHIRLWDLENGKQ---IKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKV 146
Query: 63  ILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122
            ++   S  +        + I  IA +  G Y+A G   G I ++++A+G+LL     H 
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
             +  L FS D   L++ S+DG ++I+ +
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 74  EVKSLPAEPIKP--IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           ++KS+ A P+    +A +    Y+A G   G + ++ V SG+         + +  + +S
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
            DG +L SG+ DG + I+ +           A+   LH+  GH + I  +   +   S  
Sbjct: 174 PDGKYLASGAIDGIINIFDI-----------ATGKLLHTLEGHAMPIRSLT--FSPDSQL 220
Query: 192 IVSASEDRTCKVWSLLKGRL 211
           +V+AS+D   K++ +    L
Sbjct: 221 LVTASDDGYIKIYDVQHANL 240

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 112 GRLLKKWHAHYRAVTCLVF----SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167
           G L K+  AH  A+  + +     E+   +++GS D  V++W            R   L 
Sbjct: 22  GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW----------RDERLD 71
Query: 168 LH-SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIA 225
           L  S  GH L +  + I +        S+S D   ++W L  G+ +++I   P     +A
Sbjct: 72  LQWSLEGHQLGVVSVDISH--TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLI 284
             P       G+  G + I  + +     S         L    K +  +AYS  G  L 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYS---------LDTRGKFILSIAYSPDGKYLA 180
Query: 285 SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           SG+ DG++ ++D  T  ++        P+ ++
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSL 212

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 45/212 (21%)
Query: 95  IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS---- 150
           I  G +   I +W+  +    +    H  +V CL + E    +I+GS D  VR+W     
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG 203
Query: 151 --LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208
             L T+   CE+       LH      LR  +           +V+ S+DR+  VW +  
Sbjct: 204 EMLNTLIHHCEA------VLH------LRFNN---------GMMVTCSKDRSIAVWDMAS 242
Query: 209 GR--LLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264
                LR ++    + ++ +  D    V  +G R   ++       + ST  +    + +
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW-------NTSTCEF----VRT 291
Query: 265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
           L+ H + + CL Y    L++SGS D  +R+WD
Sbjct: 292 LNGHKRGIACLQYR-DRLVVSGSSDNTIRLWD 322

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE 250
           L A+
Sbjct: 225 LAAK 228

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE 250
           L A+
Sbjct: 225 LAAK 228

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN-------WENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+   +  T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN-------WENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+   +  T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 131 SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190
           +ED   LISGS D  V IW L   +EE E      +   + TGH   ++D+ +      A
Sbjct: 36  NEDSPVLISGSRDKTVMIWKL---YEE-EQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91
Query: 191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249
             +S+S D+T ++W L  G   +  V   S + ++A  P      +   +  I +  +  
Sbjct: 92  --ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----------GDLLISGSEDGMVRVWDPI 298
           E   +S+          +HS  V+C+ YS                 S   DG ++VW+  
Sbjct: 150 ECKFSSA-------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-T 201
Query: 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLG 328
              I   F+  +  VN++ +     Y+  G
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATG 231

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 28/200 (14%)
Query: 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISGSEDGCVRIWSLLTVFEECE 159
           G   +W+V SG+LL+ +H H   V CL    SE G+  +SG  D    +W + +   +C 
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQC- 232
Query: 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219
                   + +F  H   +  +   Y        S S+D TC+++ L   R +      S
Sbjct: 233 --------VQAFETHESDVNSVR--YYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282
Query: 220 VI---DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276
           +I    ++    +  + +AG  D +I +  +   S  +  +G         H   V+ L 
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG---------HENRVSTLR 333
Query: 277 YS-TGDLLISGSEDGMVRVW 295
            S  G    SGS D  +RVW
Sbjct: 334 VSPDGTAFCSGSWDHTLRVW 353

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 100 QSGDIYMWEVASGR--LLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155
            SG + +WE+      L+ K+  + H   V  L    DG+  +SG +D  V++W L    
Sbjct: 113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL---- 168
Query: 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215
               SQ+A    L S+  H+  + + V    G     +S  ED    +W   K +    I
Sbjct: 169 ----SQKA---VLKSYNAHSSEV-NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220
Query: 216 VF---PSVIDAIALDP-AEHVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGSLSDHSK 270
            F    ++  ++   P  +  F  G   G++ +  + N +S  TS+           HS+
Sbjct: 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV----------HSQ 270
Query: 271 AVTCLAYS--TGDLLISGSEDGMVRVWDPITHNIVR 304
            +T LAYS  +   L S SED  V V D     + R
Sbjct: 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 39/187 (20%)
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184
           VTCL +S DG+ +++G E+G +R+W+             +   L+    H   I  +   
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN------------KTGALLNVLNFHRAPIVSVKWN 158
Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP----SVIDA--------IALDPA--- 229
             G    I+S   +    +W+++ G ++++        S I+A        + +D     
Sbjct: 159 KDGTH--IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSE 288
           +  F      G+I++  +  ++P+         G L  H   ++ L ++ T  LL+S S+
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPT---------GKLIGHHGPISVLEFNDTNKLLLSASD 267
Query: 289 DGMVRVW 295
           DG +R+W
Sbjct: 268 DGTLRIW 274

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 26/207 (12%)
Query: 92  GTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149
           G  +  GG++  + +W++A  + R+  +  +   A   L  S D     S   DG + +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209
            L            +   +  F GHT   + I I   G    + +   D T + W L +G
Sbjct: 169 DL-----------HNQTLVRQFQGHTDGASCIDISNDGTK--LWTGGLDNTVRSWDLREG 215
Query: 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269
           R L+   F S I ++   P       G    ++ +  +N        Y +H+      H 
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP----DKYQLHL------HE 265
Query: 270 KAVTCLAYS-TGDLLISGSEDGMVRVW 295
             V  L ++  G   +S  +D ++  W
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAW 292

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 101 SGD--IYMWEVASGRLLKKWHAHY------RAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152
           SGD    +W+V +G+ +  + + +        ++  + S + +  ISGS D  VR+W L 
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL- 235
Query: 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 212
                    R +   + ++ GH   I  +     G      + S+D TC+++ +  G  L
Sbjct: 236 ---------RITSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQL 284
Query: 213 --------RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIG 263
                   RN     ++ ++A   +  + +AG  +G  Y+   L AE        +  +G
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-------VLNLG 337
Query: 264 SLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVW 295
           +L + H   ++CL  S+ G  L +GS D  +++W
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	451
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.7
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.68
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.61
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.49
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.4
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.32
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.3
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.24
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.17
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.16
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.16
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.08
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.02
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.01
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.01
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.94
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.92
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.91
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.89
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.88
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.84
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.84
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.83
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.76
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.74
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.64
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.64
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.61
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.6
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.6
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.49
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.44
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.39
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.37
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.36
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.35
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.32
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.3
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.3
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.29
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.21
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.19
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.02
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.0
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.99
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.98
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.88
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.88
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.86
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.78
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.72
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.69
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.59
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.56
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.55
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.52
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.51
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.51
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.42
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.32
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.23
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.22
3ott_A	758	Two-component system sensor histidine kinase; beta	97.21
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.19
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.95
3ott_A	758	Two-component system sensor histidine kinase; beta	96.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.75
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.73
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.32
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.1
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.04
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.76
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.41
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.36
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.97
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.62
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.52
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.23
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	93.64
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.51
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.94
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	92.61
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.31
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	92.02
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	91.84
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.74
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	90.44
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	89.66
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	89.62
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	89.14
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	88.68
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	88.15
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	87.7
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.5
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.15
2akf_A	32	Coronin-1A; coiled coil, protein binding; 1.20A {S	85.41
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	84.76
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	84.6
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	84.29
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	80.43

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-49  Score=365.36  Aligned_cols=281  Identities=19%  Similarity=0.346  Sum_probs=260.5

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      +|...|.+++  |+|+++++++++.| |+|++||+.++..... ..|.+.|.+++|+|++++|++|+.||.|++||+.++
T Consensus       106 gh~~~V~~~~--~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          106 GHRSPVTRVI--FHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             CCSSCEEEEE--ECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             ccCCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4667899999  99999999999998 9999999998776543 558899999999999999999999999999999999


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      +++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+           ...+..+.+|...|.++.+++++  .++
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~~~~g--~~l  249 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-----------GYCVKTFTGHREWVRMVRPNQDG--TLI  249 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECTTS--SEE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------CcEEEEEeCCCccEEEEEECCCC--CEE
Confidence            99999999999999999999999999999999999999954           44677788999999999999988  899


Q ss_pred             EEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCC--------------------CCEEEEEeCCCcEEEEEccCCC
Q 012996          193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA--------------------EHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      ++++.|+.|++||+.+++....+. |...|.+++|+|+                    +.+|++|+.|+.|++||++++ 
T Consensus       250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-  328 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-  328 (410)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-
T ss_pred             EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-
Confidence            999999999999999998888776 8889999999996                    678999999999999999876 


Q ss_pred             CCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996          252 PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                              ..+..+.+|...|++++|+| +.+|++|+.||.|++||+.+++++.++.+|...|++++|+|++.+|++|+.
T Consensus       329 --------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          329 --------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             --------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             --------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence                    56778889999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccc
Q 012996          331 SNPHTSSRR  339 (451)
Q Consensus       331 d~~i~iw~~  339 (451)
                      ||.|++|+.
T Consensus       401 D~~i~vW~~  409 (410)
T 1vyh_C          401 DQTVKVWEC  409 (410)
T ss_dssp             TSEEEEEC-
T ss_pred             CCcEEEEeC
Confidence            999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-48  Score=347.73  Aligned_cols=285  Identities=19%  Similarity=0.254  Sum_probs=258.6

Q ss_pred             ecCCCCCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceee---eecCCCCeeEEEECCCCcEEEEeccCC
Q 012996           30 KSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANSHGTYIAGGGQSG  102 (451)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg  102 (451)
                      +...+|...|.+++  |+|+    +.++++++.| ++|++|++.......   ...|...|.+++|+|++.++++++.|+
T Consensus        26 ~~~~~H~~~V~~v~--~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           26 KQEQAHDDAIWSVA--WGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EETTSSSSCEEEEE--EC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             eecccCCCcEEEEE--EecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            34456778999999  9875    5689999988 999999998765432   346889999999999999999999999


Q ss_pred             CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      .|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|++.+           ......+..|...|.+++
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-----------~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES-----------GKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT-----------CSEEEEEECSSSCEEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC-----------CceeEEecCCCceEEEEE
Confidence            999999999999999999999999999999999999999999999999954           334566778889999999


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCcee
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI  261 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  261 (451)
                      |+|++  ++|++++.||.|++||+++++.+..+. |...|.+++|+|++.+|++|+.||.|++||++..         ..
T Consensus       172 ~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---------~~  240 (321)
T 3ow8_A          172 YSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---------NL  240 (321)
T ss_dssp             ECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------CE
T ss_pred             ECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------ce
Confidence            99998  899999999999999999999988887 7889999999999999999999999999999875         45


Q ss_pred             eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       262 ~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ...+.+|...|.+++|+| +.+|++|+.||+|++||+.+++++.++..|.+.|.+++|+|++.+|++++.||.|++|+.
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            678889999999999999 999999999999999999999999999999999999999999999999999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-47  Score=371.99  Aligned_cols=318  Identities=16%  Similarity=0.211  Sum_probs=262.7

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee------
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~------   77 (451)
                      +|++|+ .|++|++||..+++....+.+   |...|.+++  |+|+|+++++++.| ++|++||..++......      
T Consensus       162 ~l~s~s-~D~~v~lwd~~~~~~~~~l~~---H~~~V~~v~--fspdg~~las~s~D-~~i~lwd~~~g~~~~~~~~~~~~  234 (611)
T 1nr0_A          162 RIISGS-DDNTVAIFEGPPFKFKSTFGE---HTKFVHSVR--YNPDGSLFASTGGD-GTIVLYNGVDGTKTGVFEDDSLK  234 (611)
T ss_dssp             EEEEEE-TTSCEEEEETTTBEEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEECBCTTSS
T ss_pred             EEEEEe-CCCeEEEEECCCCeEeeeecc---ccCceEEEE--ECCCCCEEEEEECC-CcEEEEECCCCcEeeeecccccc
Confidence            689999 999999999999888877765   557788888  99999999999998 99999999877765433      


Q ss_pred             --cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee---------------------------------------
Q 012996           78 --LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK---------------------------------------  116 (451)
Q Consensus        78 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------------------  116 (451)
                        .|.+.|.+++|+|++++|++|+.|+.|++||+.+++++.                                       
T Consensus       235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~  314 (611)
T 1nr0_A          235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG  314 (611)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred             ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence              588999999999999999999999999999998775443                                       


Q ss_pred             ----eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc-----------------------------
Q 012996          117 ----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA-----------------------------  163 (451)
Q Consensus       117 ----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----------------------------  163 (451)
                          .+.+|...|++++|+|++++|++++.|+.|++||+.++.........                             
T Consensus       315 ~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~  394 (611)
T 1nr0_A          315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP  394 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEee
Confidence                33578999999999999999999999999999998754221100000                             


Q ss_pred             ---------------------------cc-c---------------ceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          164 ---------------------------SH-L---------------YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       164 ---------------------------~~-~---------------~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                                                 .. .               .+..+ .|...+.+++|+|++  .+|++|+.|++
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg--~~lasgs~D~~  471 (611)
T 1nr0_A          395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDK--QFVAVGGQDSK  471 (611)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTS--CEEEEEETTSE
T ss_pred             cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCC--CEEEEeCCCCe
Confidence                                       00 0               00011 144567889999998  89999999999


Q ss_pred             EEEEEcCCCce--eeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee--eccCCcceeEEE
Q 012996          201 CKVWSLLKGRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLA  276 (451)
Q Consensus       201 i~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~  276 (451)
                      |++||+.++..  .....|...|.+++|+|++++|++++.|+.|++|++.+..        .....  ..+|...|++++
T Consensus       472 v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--------~~~~~~~~~~H~~~V~~v~  543 (611)
T 1nr0_A          472 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--------ELAHTNSWTFHTAKVACVS  543 (611)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--------EESCCCCCCCCSSCEEEEE
T ss_pred             EEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--------ceeeeeeeeecccceeEEE
Confidence            99999987653  2344588999999999999999999999999999998732        22222  345999999999


Q ss_pred             Eec-CCEEEEEcCCCcEEEEeCCCCc-eE-EEeecC-CCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          277 YST-GDLLISGSEDGMVRVWDPITHN-IV-RMFRLA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       277 ~~~-~~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |+| +.+|++|+.|++|++||+.++. .+ ..+.+| .+.|.+++|+|+++ |++++.|++|++|++.
T Consensus       544 fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          544 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            999 9999999999999999998865 33 567788 89999999999998 9999999999999963

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.4e-48  Score=348.20  Aligned_cols=299  Identities=20%  Similarity=0.250  Sum_probs=239.1

Q ss_pred             eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC------------CceeeeecCCCC
Q 012996           15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------------PQVEVKSLPAEP   82 (451)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~------------~~~~~~~~~~~~   82 (451)
                      .+.|++....+.       .+...|.+++  |+|+|++|++++ + +++++||...            ........+...
T Consensus        16 ~r~w~~~~~~~~-------~~~~~v~~~~--fs~dG~~l~~~s-d-~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (344)
T 4gqb_B           16 AREWNLPPNAPA-------CMERQLEAAR--YRSDGALLLGAS-S-LSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAG   84 (344)
T ss_dssp             -------CCSCS-------SCCSEEEEEE--ECTTSCEEEEEE-C-CSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSC
T ss_pred             ccccCCCCCCcc-------cccCCEEEEE--ECCCCCEEEEEe-C-CceEEeeceeeeeccccccCCcceeeeeeccCCC
Confidence            456776544331       3456688888  999999998776 4 6777776321            111122334678


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee----ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      |.+++|+|++ .|++|+.||.|+|||+.+++.+..+    .+|.+.|++++|+|++++|++|+.||.|++||+.+     
T Consensus        85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-----  158 (344)
T 4gqb_B           85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-----  158 (344)
T ss_dssp             EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred             EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-----
Confidence            9999999985 6778999999999999998766543    58999999999999999999999999999999954     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECC-CCCEEE
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFY  234 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~  234 (451)
                            ...+..+.+|...|.+++|++++. .++++++.|++|++||+++++....+.   +...+.+++|+| ++.+|+
T Consensus       159 ------~~~~~~~~~h~~~V~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          159 ------QVVLSSYRAHAAQVTCVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             ------TEEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             ------CcEEEEEcCcCCceEEEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence                  556788899999999999999874 588999999999999999999887765   455789999999 567889


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEeCCCCceEEEeecCCCC
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIVRMFRLAKGP  312 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (451)
                      +|+.||.|++||+++.         +++..+.+|...|++++|+| + .+|++|+.||+|+|||+.+++++ .+.+|.+.
T Consensus       232 sg~~dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~  301 (344)
T 4gqb_B          232 FGDENGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF  301 (344)
T ss_dssp             EEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC
T ss_pred             EeccCCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC
Confidence            9999999999999876         45678899999999999999 5 68999999999999999988765 56899999


Q ss_pred             eeEEEEEecCce-eeeccCCCCccccccCCCCCCCc
Q 012996          313 VNNILVVRRPLY-LNLGSFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       313 v~~l~~s~~~~~-l~~~s~d~~i~iw~~~~~~~~~~  347 (451)
                      |++++|+|++.. |+++|.|++|++|++....++.+
T Consensus       302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p  337 (344)
T 4gqb_B          302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP  337 (344)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred             EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence            999999999875 67899999999999987655443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.3e-47  Score=342.32  Aligned_cols=280  Identities=20%  Similarity=0.326  Sum_probs=250.4

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      .+|...|.+++  |+|+++++++++.| |+|++||..++..... ..|...|.+++|+|++++|++|+.|+.|++|++.+
T Consensus        52 ~gH~~~v~~~~--~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~  128 (340)
T 1got_B           52 RGHLAKIYAMH--WGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             CCCSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             cCCCCceEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence            35667899999  99999999999998 9999999987765533 55788999999999999999999999999999987


Q ss_pred             Cc----ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996          112 GR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (451)
Q Consensus       112 ~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (451)
                      +.    ....+.+|.+.|.++.|++++. +++++.|+.|++||+.+           ...+..+.+|...|.+++|+|++
T Consensus       129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          129 REGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET-----------GQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             CSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC-----------CcEEEEEcCCCCceEEEEECCCC
Confidence            53    4566789999999999998875 88999999999999954           44567788999999999999988


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                        .++++|+.|+.|++||++++.....+. |...|.+++|+|++.+|++|+.||.|++||++...         .+..+.
T Consensus       197 --~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~  265 (340)
T 1got_B          197 --RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---------ELMTYS  265 (340)
T ss_dssp             --SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------EEEEEC
T ss_pred             --CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc---------EEEEEc
Confidence              899999999999999999999888887 78899999999999999999999999999998753         233332


Q ss_pred             --cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          267 --DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       267 --~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                        .+...|++++|+| +.+|++|+.||.|++||+.+++.+..+.+|.++|++++|+|+|.+|++|+.||.|++|+
T Consensus       266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence              3445899999999 99999999999999999999999999999999999999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.7e-47  Score=370.68  Aligned_cols=327  Identities=18%  Similarity=0.247  Sum_probs=263.2

Q ss_pred             EEEeecCCCCCCeEEEECccCce--eeeeecC-----------------------------------------CCCCCce
Q 012996            3 LLIASSSVADTGIGCWDLESGAE--QLRYKSC-----------------------------------------ASPPHGL   39 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~--~~~~~~~-----------------------------------------~~~~~~v   39 (451)
                      .+||+|+ .||+|+|||+.+++.  ...+..|                                         .+|...|
T Consensus        72 ~~lasg~-~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           72 YYCASGD-VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM  150 (611)
T ss_dssp             SEEEEEE-TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCE
T ss_pred             cEEEEEe-CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCc
Confidence            3789999 999999999865432  2222221                                         2455667


Q ss_pred             EEecceEeeccCc-ccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee
Q 012996           40 ACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (451)
Q Consensus        40 ~~~~~~~~~~~~~-l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  117 (451)
                      .+++  |+|++.. +++++.| ++|++||..+.+... ...|...|.+++|+|+|++|++|+.|+.|++||+.+++.+..
T Consensus       151 ~~v~--f~p~~~~~l~s~s~D-~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          151 NSVD--FKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             EEEE--ECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eEEE--ECCCCCeEEEEEeCC-CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence            7777  8888875 7777777 999999987765543 345889999999999999999999999999999999998887


Q ss_pred             ec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc----------------------------
Q 012996          118 WH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR----------------------------  162 (451)
Q Consensus       118 ~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------------------------  162 (451)
                      +.       +|.+.|.+++|+|++++|++++.|++|++||+.++........                            
T Consensus       228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence            74       7999999999999999999999999999999976432111000                            


Q ss_pred             ----ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-----------------------
Q 012996          163 ----ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-----------------------  215 (451)
Q Consensus       163 ----~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------  215 (451)
                          ........+.+|...|.+++|+|++  .+|++++.|++|++||+.+++....+                       
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s  385 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS  385 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence                0111334567899999999999988  89999999999999999876443221                       


Q ss_pred             ------------------------------------------------------------ecccceeEEEECCCCCEEEE
Q 012996          216 ------------------------------------------------------------VFPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       216 ------------------------------------------------------------~~~~~i~~~~~~~~~~~l~~  235 (451)
                                                                                  .+...+.+++|+|++++|++
T Consensus       386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las  465 (611)
T 1nr0_A          386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV  465 (611)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred             cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence                                                                        11234678999999999999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEE--eecCCC
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRM--FRLAKG  311 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~  311 (451)
                      |+.|+.|++||+....       ...... .+|...|++++|+| +.+|++++.|++|++||+.+ ++++..  +..|..
T Consensus       466 gs~D~~v~lwd~~~~~-------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~  537 (611)
T 1nr0_A          466 GGQDSKVHVYKLSGAS-------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  537 (611)
T ss_dssp             EETTSEEEEEEEETTE-------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             eCCCCeEEEEEccCCc-------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence            9999999999997642       122333 67999999999999 99999999999999999987 665554  345999


Q ss_pred             CeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       312 ~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      .|.+++|+|||++|++++.|++|++|++....
T Consensus       538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence            99999999999999999999999999987643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.2e-48  Score=350.44  Aligned_cols=305  Identities=20%  Similarity=0.243  Sum_probs=236.5

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC-----CccEEEEECCCCcee----
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVE----   74 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~g~i~vw~~~~~~~~----   74 (451)
                      +++.++ .+.....|++....+       ..|...|.+++  |+|||++||+++.+     |+.|++|+..++...    
T Consensus        18 ~~~~~~-g~~~~~~w~~p~~~p-------~~H~~~V~~v~--fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~   87 (357)
T 4g56_B           18 LYFQSN-GSSKGSAWGRPVTAP-------ACMEVQIGAVR--YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC   87 (357)
T ss_dssp             ------------------------------CCCSEEEEEE--ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC
T ss_pred             eEEecC-CCccccccCCCCCCc-------ccccCCEEEEE--ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe
Confidence            344445 567778888764332       24778899999  99999999999873     388999998765432    


Q ss_pred             -eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee----eeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           75 -VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        75 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                       ....|...|.+++|+|++.++ +++.||.|+|||+.+++...    ...+|.+.|++++|+|++++|++|+.||.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence             234577889999999998755 56789999999998886543    335799999999999999999999999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEE
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL  226 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~  226 (451)
                      |+.+           ...+..+.+|...|.+++|++++. .++++++.||.|++||+++++....+.   +...+.+++|
T Consensus       167 d~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~  234 (357)
T 4g56_B          167 DLSQ-----------KAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW  234 (357)
T ss_dssp             ETTT-----------TEEEEEECCCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred             ECCC-----------CcEEEEEcCCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence            9954           456777889999999999998874 588999999999999999988776654   5677999999


Q ss_pred             CCC-CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEeCCCCceE
Q 012996          227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      +|+ +.+|++|+.|+.|++||+++.         ..+..+.+|...|++++|+| + .+|++|+.||+|+|||+.+++++
T Consensus       235 sp~~~~~la~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          235 HPEKDDTFACGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             CTTSTTEEEEEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             hhcccceEEEeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            997 568899999999999999875         45677889999999999999 4 68999999999999999999888


Q ss_pred             EEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccCC
Q 012996          304 RMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       304 ~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ..+ +|.+.|++++|+| ++.+|++++.||.|++|++..
T Consensus       306 ~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          306 RDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            765 7899999999998 899999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.3e-46  Score=339.93  Aligned_cols=288  Identities=19%  Similarity=0.308  Sum_probs=254.2

Q ss_pred             eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGD  103 (451)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~  103 (451)
                      ...++.   +|...|.+++  |+|++++|++++.| |+|++||..+..... ...|...|.+++|+|++.+|++|+.|+.
T Consensus        56 ~~~~l~---gH~~~V~~~~--~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~  129 (354)
T 2pbi_B           56 TRRTLK---GHGNKVLCMD--WCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK  129 (354)
T ss_dssp             EEEEEE---CCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred             EEEEec---CCCCeEEEEE--ECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence            344455   4667899999  99999999999998 999999988766543 3457789999999999999999999999


Q ss_pred             EEEEEcCCC------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996          104 IYMWEVASG------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (451)
Q Consensus       104 i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (451)
                      +++|++...      .....+.+|...|.++.|+|++..|++++.||+|++||+.+           ...+..+.+|...
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-----------~~~~~~~~~h~~~  198 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-----------GQLLQSFHGHGAD  198 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSC
T ss_pred             EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEEcCCCCC
Confidence            999998643      34566778999999999999999999999999999999954           4567788899999


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (451)
                      |.+++++++..+.+|++|+.||.|++||+++++.+..+. |...|.+++|+|++.+|++|+.|+.|++||++...     
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-----  273 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-----  273 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----
Confidence            999999987555899999999999999999999988887 78899999999999999999999999999998752     


Q ss_pred             CCceeeeeec--cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996          257 YGMHIIGSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (451)
Q Consensus       257 ~~~~~~~~~~--~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~  333 (451)
                          .+..+.  .+...+.+++|+| +.+|++|+.|+.|++||+.+++.+..+.+|.++|++++|+|+|++|++|+.||.
T Consensus       274 ----~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          274 ----EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             ----EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             ----EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence                233333  3345789999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 012996          334 HTSSR  338 (451)
Q Consensus       334 i~iw~  338 (451)
                      +++|+
T Consensus       350 v~vW~  354 (354)
T 2pbi_B          350 LRVWA  354 (354)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-46  Score=334.64  Aligned_cols=289  Identities=18%  Similarity=0.275  Sum_probs=252.3

Q ss_pred             eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD  103 (451)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~  103 (451)
                      ..+++.+   |...|.+++  |+|+++++++++.| |.|++||+.++..... ..|..+|.+++|+|++++|++|+.|+.
T Consensus         5 ~~~~~~~---h~~~V~~~~--fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~   78 (304)
T 2ynn_A            5 IKKTFSN---RSDRVKGID--FHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR   78 (304)
T ss_dssp             CEEEEEE---ECSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             eEEeecC---CCCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCE
Confidence            3445554   456788888  99999999999998 9999999998765543 457889999999999999999999999


Q ss_pred             EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                      |++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||+|++||+++          .......+.+|...|.+++|
T Consensus        79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~----------~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----------NWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG----------TTEEEEEECCCCSCEEEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC----------CcchhhhhcccCCcEEEEEE
Confidence            99999999999999999999999999999999999999999999999954          22345678899999999999


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (451)
                      +|.+. ..|++|+.|++|++||++++.....+.  +...+..++|+|  ++.+|++|+.|+.|++||+++.         
T Consensus       149 ~p~~~-~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---------  218 (304)
T 2ynn_A          149 NPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---------  218 (304)
T ss_dssp             CTTCT-TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---------
T ss_pred             CCCCC-CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---------
Confidence            98422 799999999999999998887666554  557789999987  7789999999999999999876         


Q ss_pred             eeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc--eeeeccCCCCccc
Q 012996          260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL--YLNLGSFSNPHTS  336 (451)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~s~d~~i~i  336 (451)
                      ..+..+.+|...|.+++|+| +.+|++|+.||+|++||+.+++++.++..|...+.+++|+|++.  ++++|+.|| +.+
T Consensus       219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~  297 (304)
T 2ynn_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTV  297 (304)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEE
T ss_pred             ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEE
Confidence            66788999999999999999 99999999999999999999999999999999999999999875  466666555 555


Q ss_pred             cccC
Q 012996          337 SRRH  340 (451)
Q Consensus       337 w~~~  340 (451)
                      |++.
T Consensus       298 ~~~~  301 (304)
T 2ynn_A          298 LSLG  301 (304)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            6544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=341.03  Aligned_cols=309  Identities=16%  Similarity=0.184  Sum_probs=250.6

Q ss_pred             ceeeeeecCCCCCC-ceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----eeecCCCCeeEEEECCCCcEEEEe
Q 012996           24 AEQLRYKSCASPPH-GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGG   98 (451)
Q Consensus        24 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~   98 (451)
                      +.+.++.+   |.. .+.+++  |+|+|++||+++.| ++|+|||+.++...    ....|...|.+++|+|++++|++|
T Consensus         6 ~~~~~~~~---h~~~~v~~l~--~sp~g~~las~~~D-~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~   79 (345)
T 3fm0_A            6 VLLGRVPA---HPDSRCWFLA--WNPAGTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA   79 (345)
T ss_dssp             EEEEEECC---STTSCEEEEE--ECTTSSCEEEEETT-SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred             EEeeeecC---CCCCcEEEEE--ECCCCCEEEEEcCC-CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE
Confidence            34555554   444 788888  99999999999998 99999999877532    224588999999999999999999


Q ss_pred             ccCCCEEEEEcCCC--cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC
Q 012996           99 GQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (451)
Q Consensus        99 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (451)
                      +.|+.|++|++..+  +++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+.        .....+..+.+|..
T Consensus        80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~--------~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE--------DEYECVSVLNSHTQ  151 (345)
T ss_dssp             ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT--------SCEEEEEEECCCCS
T ss_pred             ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC--------CCeEEEEEecCcCC
Confidence            99999999999876  457788999999999999999999999999999999999652        12234567789999


Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (451)
                      .|.+++|+|++  .+|++++.|+.|++||.+++...  ..+. |...|.+++|+|++++|++|+.|+.|++|+.......
T Consensus       152 ~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          152 DVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             CEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            99999999998  89999999999999999887543  3444 7889999999999999999999999999997543221


Q ss_pred             CC------CCCceeeeeecc-CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc---------eEEEeecCCCCeeEE
Q 012996          254 TS------SYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNI  316 (451)
Q Consensus       254 ~~------~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l  316 (451)
                      ..      ......+..+.+ |...|++++|+| +..|++++.|+.|++|+...+.         ......+|...|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence            11      111233445555 889999999999 9999999999999999986542         122345789999999


Q ss_pred             EEEecC-ceeeeccCCCCccccccCCCCCCCcc
Q 012996          317 LVVRRP-LYLNLGSFSNPHTSSRRHGSQLPPPL  348 (451)
Q Consensus       317 ~~s~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~  348 (451)
                      +|+|++ .+||+++.||.|++|+....+.+.++
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            999998 48999999999999999877655443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.1e-46  Score=363.73  Aligned_cols=300  Identities=22%  Similarity=0.387  Sum_probs=270.8

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      +|++++ .|+.|++||. +++.+..+.+   |...|.+++  |+|+++.+++++.| +.|++||...........|...|
T Consensus       276 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~t~~~d-~~i~~w~~~~~~~~~~~~~~~~v  347 (577)
T 2ymu_A          276 TIASAS-DDKTVKLWNR-NGQLLQTLTG---HSSSVWGVA--FSPDGQTIASASDD-KTVKLWNRNGQHLQTLTGHSSSV  347 (577)
T ss_dssp             EEEEEE-TTSCEEEEET-TSCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred             EEEEEe-CCCEEEEEeC-CCcEEEEEec---CCCCeEEEE--ECCCCCEEEEEeCC-CeEEEEeCCCCeeEEEeCCCCCE
Confidence            578888 9999999996 4666666654   557788888  99999999999988 99999999887777777788999


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      .+++|+|++++|++|+.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||..           
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-----------  415 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----------  415 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----------
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-----------
Confidence            99999999999999999999999994 678888999999999999999999999999999999999962           


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI  242 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (451)
                       ...+..+.+|...|++++|+|++  .+|++++.|+.|++||. +++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus       416 -~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i  491 (577)
T 2ymu_A          416 -GQLLQTLTGHSSSVWGVAFSPDD--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  491 (577)
T ss_dssp             -CCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             -CCEEEEecCCCCCeEEEEECCCC--CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence             23566788999999999999988  89999999999999996 455666555 88999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      ++||...          ..+..+.+|...|++++|+| +++|++++.||.|++||. +++++.++.+|.++|++++|+||
T Consensus       492 ~iw~~~~----------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          492 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             EEEETTS----------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEcCCC----------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence            9999643          45778899999999999999 999999999999999995 78999999999999999999999


Q ss_pred             CceeeeccCCCCccccc
Q 012996          322 PLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       322 ~~~l~~~s~d~~i~iw~  338 (451)
                      |++|++++.|++|++||
T Consensus       561 g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          561 GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEeCCCEEEEeC
Confidence            99999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-46  Score=345.46  Aligned_cols=303  Identities=19%  Similarity=0.279  Sum_probs=257.1

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCC
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSH   91 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~   91 (451)
                      ..+..|+..+..+..++.+   |...|.+++  |+|++++|++++.| |+|++||..++.... ...|...|.+++|+|+
T Consensus        46 ~~~~~~~~~~~~~~~~l~g---H~~~V~~~~--~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~  119 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQG---HSGKVYSLD--WTPEKNWIVSASQD-GRLIVWNALTSQKTHAIKLHCPWVMECAFAPN  119 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECC---CSSCEEEEE--ECTTSSCEEEEETT-SEEEEEETTTTEEEEEEECCCTTCCCCEECTT
T ss_pred             ccccccccceeEEeecccc---cccEEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCccceEEecCCCCEEEEEECCC
Confidence            3456788777777777775   557788998  99999999999998 999999998877553 3568889999999999


Q ss_pred             CcEEEEeccCCCEEEEEcCCCc-------ceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           92 GTYIAGGGQSGDIYMWEVASGR-------LLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      +++|++|+.|+.+++||+.+..       ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++         
T Consensus       120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~---------  190 (380)
T 3iz6_a          120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG---------  190 (380)
T ss_dssp             SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC---------
T ss_pred             CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC---------
Confidence            9999999999999999986532       34567899999999999996 567999999999999999652         


Q ss_pred             cccceecc-----cCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEECCCCCEEEE
Q 012996          164 SHLYLHSF-----TGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       164 ~~~~~~~~-----~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~  235 (451)
                        ..+..+     .+|...|.++.+++ ++  .++++|+.|+.|++||++. +..+..+. |...|.+++|+|++.+|++
T Consensus       191 --~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          191 --QRISIFGSEFPSGHTADVLSLSINSLNA--NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             --CEEEEECCCSSSSCCSCEEEEEECSSSC--CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             --cEEEEeecccCCCCccCeEEEEeecCCC--CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence              222222     67999999999976 44  8999999999999999984 46666665 8899999999999999999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeecc-------CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe-
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-------HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-  306 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-  306 (451)
                      |+.||.|++||++++.         .+..+..       +...|++++|+| +.+|++|+.||.|++||+.+++.+..+ 
T Consensus       267 ~s~D~~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  337 (380)
T 3iz6_a          267 GSDDGTCRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG  337 (380)
T ss_dssp             ECSSSCEEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             EcCCCeEEEEECCCCc---------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence            9999999999998863         3333332       234589999999 999999999999999999999988877 


Q ss_pred             ---ecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          307 ---RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       307 ---~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                         .+|.+.|++++|+|+|.+|++|+.||.+++|++.+.+
T Consensus       338 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence               6899999999999999999999999999999988653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-44  Score=323.11  Aligned_cols=282  Identities=22%  Similarity=0.373  Sum_probs=252.0

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      +|...|.+++  |+|+++++++++.| |.|++|+..++..... ..|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus        21 gh~~~v~~~~--~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           21 GHTKAVSSVK--FSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             CCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ccCCcEEEEE--ECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            4667899999  99999999999998 9999999987766543 458889999999999999999999999999999999


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      +.+..+.+|...|.++.|+|++++|++|+.||.|++||+++           ...+..+..|...|.+++|++++  .++
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l  164 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-----------GKCLKTLPAHSDPVSAVHFNRDG--SLI  164 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTS--SEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CEEEEEecCCCCcEEEEEEcCCC--CEE
Confidence            99999999999999999999999999999999999999954           44567788899999999999988  899


Q ss_pred             EEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          193 VSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      ++++.||.|++||+++++.+..+.  +...+..++|+|++++|++++.||.|++||+.+.         ..+..+.+|..
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~  235 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---------KCLKTYTGHKN  235 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------EEEEEECSSCC
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEEEEEecCC
Confidence            999999999999999998877764  4567999999999999999999999999999876         55667777766


Q ss_pred             ceeE--EEEe-c-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc--CCCCccccccC
Q 012996          271 AVTC--LAYS-T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS--FSNPHTSSRRH  340 (451)
Q Consensus       271 ~v~~--~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--~d~~i~iw~~~  340 (451)
                      .+.+  ..++ + +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            5433  3444 4 88999999999999999999999999999999999999999999999986  69999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.6e-45  Score=337.77  Aligned_cols=269  Identities=22%  Similarity=0.362  Sum_probs=242.6

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+|++|+ .||+|+|||+.+++....+.+|   ...|.+++  |+|+++++++++.| ++|++||+.+...... ..|..
T Consensus       121 ~~l~s~s-~Dg~i~vwd~~~~~~~~~l~~h---~~~V~~v~--~~~~~~~l~sgs~D-~~i~iwd~~~~~~~~~~~~h~~  193 (410)
T 1vyh_C          121 SVMVSAS-EDATIKVWDYETGDFERTLKGH---TDSVQDIS--FDHSGKLLASCSAD-MTIKLWDFQGFECIRTMHGHDH  193 (410)
T ss_dssp             SEEEEEE-SSSCEEEEETTTCCCCEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCCCEEETTSSCEEECCCCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCcEEEEEecc---CCcEEEEE--EcCCCCEEEEEeCC-CeEEEEeCCCCceeEEEcCCCC
Confidence            3689999 9999999999999999888764   46788888  99999999999998 9999999988765443 45788


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .|.+++|+|++++|++|+.|+.|++||+.++.++..+.+|...|.++.|+|++.+|++|+.||.|++||+.+        
T Consensus       194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~--------  265 (410)
T 1vyh_C          194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--------  265 (410)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999954        


Q ss_pred             cccccceecccCCcCceeEEEEeecCC------------------eeEEEEeeCCCcEEEEEcCCCceeeeee-ccccee
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGV------------------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVID  222 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~  222 (451)
                         ......+.+|...|.+++|+|++.                  +.++++|+.|+.|++||++++.++..+. |...|.
T Consensus       266 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~  342 (410)
T 1vyh_C          266 ---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR  342 (410)
T ss_dssp             ---CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             ---CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence               445667889999999999998631                  3689999999999999999999888887 888999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      +++|+|++.+|++|+.||.|++||+.+.         ..+..+.+|...|++++|+| +.+|++|+.||+|++|+++
T Consensus       343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          343 GVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEECSSSSCEEEEETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999999999775         45667889999999999999 9999999999999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-44  Score=323.44  Aligned_cols=283  Identities=19%  Similarity=0.289  Sum_probs=244.2

Q ss_pred             CCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCc------eeeeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996           33 ASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQ------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  105 (451)
                      .+|...|.+++  |+|++ ++|++++.| ++|++|++....      ......|...|.+++|+|++++|++|+.|+.|+
T Consensus        14 ~gH~~~V~~l~--~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           14 EGHNGWVTSLA--TSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             CCCSSCEEEEE--ECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccceEEEEE--ccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            35667888888  99976 788888888 999999986432      123356889999999999999999999999999


Q ss_pred             EEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      +||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++.            ..+..+.+|...|.++.+.|
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------------~~~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------------CEEEEECCCSSCEEEEEECC
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------CeEEEEeccCCcEEEEEEcc
Confidence            999999999999999999999999999999999999999999999842            35667789999999999988


Q ss_pred             cC----CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCce
Q 012996          186 GG----VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH  260 (451)
Q Consensus       186 ~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  260 (451)
                      ..    .+..+++++.|+.|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||+.+.         .
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---------~  229 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------K  229 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---------E
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------c
Confidence            54    12589999999999999999988877776 8899999999999999999999999999999886         4


Q ss_pred             eeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec--------CCCCeeEEEEEecCceeeeccCC
Q 012996          261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--------AKGPVNNILVVRRPLYLNLGSFS  331 (451)
Q Consensus       261 ~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~s~d  331 (451)
                      .+..+.. ...|.+++|+| +.+|++++.+ .+++|++..+..+..+..        |...+.+++|+|+|++|++|+.|
T Consensus       230 ~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          230 AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence            4555554 46899999999 8888887755 599999998877776643        45679999999999999999999


Q ss_pred             CCccccccCC
Q 012996          332 NPHTSSRRHG  341 (451)
Q Consensus       332 ~~i~iw~~~~  341 (451)
                      |.|++|++.+
T Consensus       308 g~i~vWd~~t  317 (319)
T 3frx_A          308 NVIRVWQVMT  317 (319)
T ss_dssp             SCEEEEEEEE
T ss_pred             ceEEEEEEee
Confidence            9999999764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-44  Score=322.45  Aligned_cols=268  Identities=20%  Similarity=0.353  Sum_probs=241.3

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP   82 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~   82 (451)
                      +|+||+ .|++|+|||+.+++..... ...+|...|.+++  |++++..+++++.| ++|++||+.+++.... ..+...
T Consensus        50 ~l~tgs-~D~~v~vW~~~~~~~~~~~-~l~gh~~~v~~~~--~~~~~~~l~s~s~D-~~i~lWd~~~~~~~~~~~~~~~~  124 (321)
T 3ow8_A           50 TVVTGS-LDDLVKVWKWRDERLDLQW-SLEGHQLGVVSVD--ISHTLPIAASSSLD-AHIRLWDLENGKQIKSIDAGPVD  124 (321)
T ss_dssp             EEEEEE-TTSCEEEEEEETTEEEEEE-EECCCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCTTC
T ss_pred             EEEEEc-CCCCEEEEECCCCCeeeee-eeccCCCCEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCEEEEEeCCCcc
Confidence            689999 9999999999877543321 2335678899999  99999999999998 9999999998876543 446778


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      +.+++|+|++++|++|+.+|.|++|++.+++....+..|...|.+++|+|++++|++|+.||.|++||+++         
T Consensus       125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~---------  195 (321)
T 3ow8_A          125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT---------  195 (321)
T ss_dssp             CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999954         


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCc
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                        ...+..+.+|..+|.+++|+|++  .+|++++.|+.|++||+++++....+. |...|.+++|+|++.+|++++.|+.
T Consensus       196 --~~~~~~~~~h~~~v~~l~~spd~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          196 --GKLLHTLEGHAMPIRSLTFSPDS--QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             --TEEEEEECCCSSCCCEEEECTTS--CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             --CcEEEEEcccCCceeEEEEcCCC--CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence              44667788999999999999988  899999999999999999998888777 7889999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      |++||+.+.         .++..+.+|...|.+++|+| +.+|++++.||.|++||..
T Consensus       272 v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          272 VKVWDVGTR---------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEeCCCC---------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999876         66788889999999999999 9999999999999999963

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.3e-44  Score=348.63  Aligned_cols=303  Identities=23%  Similarity=0.396  Sum_probs=270.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      +|++++ .|+.|++||. +++.+..+.+   |...|.+++  |+|+++.+++++.+ +.|++|+...........|...|
T Consensus       235 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~---~~~~v~~v~--~~~d~~~l~~~~~d-~~i~~w~~~~~~~~~~~~h~~~v  306 (577)
T 2ymu_A          235 TIASAS-DDKTVKLWNR-NGQLLQTLTG---HSSSVNGVA--FRPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSSV  306 (577)
T ss_dssp             CEEEEE-TTSCEEEECT-TSCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred             EEEEEe-CCCEEEEEeC-CCCEEEEEec---CCCCEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCcEEEEEecCCCCe
Confidence            578888 9999999995 5677766665   456788888  99999999999988 99999998766666666788999


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      .+++|+|++++|++++.||.|++||.. +..+..+.+|...|.+++|+|++++|++++.||.|++||..           
T Consensus       307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-----------  374 (577)
T 2ymu_A          307 WGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----------  374 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----------
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-----------
Confidence            999999999999999999999999975 55567788999999999999999999999999999999962           


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI  242 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (451)
                       ...+..+.+|...|.+++|+|++  .+|++++.|+.|++||. +++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus       375 -~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          375 -GQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             -CCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             -CCEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence             23566778899999999999998  89999999999999996 566666665 88899999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      ++||...          ..+..+.+|...|++++|+| +.+|++++.|+.|++|| .+++++..+.+|.++|++++|+|+
T Consensus       451 ~~w~~~~----------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~d  519 (577)
T 2ymu_A          451 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD  519 (577)
T ss_dssp             EEEETTS----------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEECCC----------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCC
Confidence            9999754          45677889999999999999 99999999999999999 478999999999999999999999


Q ss_pred             CceeeeccCCCCccccccCC
Q 012996          322 PLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       322 ~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +++|++++.||.|++|+..+
T Consensus       520 g~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             SSCEEEEETTSEEEEECTTS
T ss_pred             CCEEEEEECcCEEEEEeCCC
Confidence            99999999999999999754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-44  Score=338.43  Aligned_cols=310  Identities=14%  Similarity=0.182  Sum_probs=269.3

Q ss_pred             EEeecCCCCCCeEEEEC----ccCc------eeeeeecCC-------CCCCceEEecceEeeccCcccCCCCCCccEEEE
Q 012996            4 LIASSSVADTGIGCWDL----ESGA------EQLRYKSCA-------SPPHGLACVGQRFLASSQLREQPSASSGSILYW   66 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~----~~~~------~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw   66 (451)
                      +||+|+ .||.|++||+    .+++      ....+....       .|...|.+++  |+|++++|++++.+ |.|++|
T Consensus        60 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~d-g~i~i~  135 (425)
T 1r5m_A           60 ILAYGE-KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA--WSHDGNSIVTGVEN-GELRLW  135 (425)
T ss_dssp             EEEEEE-TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE--ECTTSSEEEEEETT-SCEEEE
T ss_pred             EEEEec-CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE--EcCCCCEEEEEeCC-CeEEEE
Confidence            789999 9999999999    8888      444443211       1456899999  99999999999998 999999


Q ss_pred             ECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC---------------eeEEEEc
Q 012996           67 SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA---------------VTCLVFS  131 (451)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~  131 (451)
                      +...........|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...               +.++.|+
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (425)
T 1r5m_A          136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV  215 (425)
T ss_dssp             ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred             eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence            9555555555668899999999999999999999999999999999999888888776               9999999


Q ss_pred             cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce
Q 012996          132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL  211 (451)
Q Consensus       132 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  211 (451)
                      |++ .+++++.||.|++||+.+           ......+..|...|.+++|++++  .+|++++.|+.|++||+++++.
T Consensus       216 ~~~-~~~~~~~~g~i~~~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          216 DDD-KFVIPGPKGAIFVYQITE-----------KTPTGKLIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ETT-EEEEECGGGCEEEEETTC-----------SSCSEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEECSSSBSC
T ss_pred             CCC-EEEEEcCCCeEEEEEcCC-----------CceeeeeccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCcc
Confidence            975 588899999999999954           34556677899999999999988  7999999999999999999988


Q ss_pred             eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996          212 LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (451)
Q Consensus       212 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d  289 (451)
                      +..+. +...+.+++|+|++ ++++++.||.|++||+.+.         ..+..+..|...|.+++|+| +.+|++++.|
T Consensus       282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---------TLLALSIVDGVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---------EEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---------cEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence            88886 88899999999999 9999999999999999875         56777888999999999999 9999999999


Q ss_pred             CcEEEEeCCCCc--------------------eEEEeecCCC--CeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          290 GMVRVWDPITHN--------------------IVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       290 g~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      |.|++||+.+++                    ++..+..|..  +|++++|+|++++|++++.||.+++|++.+
T Consensus       352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence            999999999888                    8999999976  999999999999999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-45  Score=341.08  Aligned_cols=312  Identities=13%  Similarity=0.184  Sum_probs=262.2

Q ss_pred             EEeec----------CCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC---
Q 012996            4 LIASS----------SVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK---   70 (451)
Q Consensus         4 ~l~s~----------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~---   70 (451)
                      +||+|          + .||.|+|||+.++.....+... .+...+.+++  |+|++++|++++.| |.|++|++..   
T Consensus        27 ~l~~g~~~g~~~~~~~-~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~--~s~~~~~l~~~~~d-g~v~vw~~~~~~~  101 (416)
T 2pm9_A           27 LLVSGTVSGTVDANFS-TDSSLELWSLLAADSEKPIASL-QVDSKFNDLD--WSHNNKIIAGALDN-GSLELYSTNEANN  101 (416)
T ss_dssp             EEEEBCBSSCCCSSCC-CCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEE--ECSSSSCEEEEESS-SCEEEECCSSTTS
T ss_pred             EEEEEecCcccccccC-CCCeEEEEEccCCCCCcEEEEE-ecCCceEEEE--ECCCCCeEEEEccC-CeEEEeecccccc
Confidence            67787          7 8999999999987643222222 3667899999  99999999999988 9999999987   


Q ss_pred             -C-ceeeeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCc------cee---eeccccCCeeEEEEccC-CcEE
Q 012996           71 -P-QVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR------LLK---KWHAHYRAVTCLVFSED-GSFL  137 (451)
Q Consensus        71 -~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l  137 (451)
                       . .......|...|.+++|+|+ +++|++++.||.|++||+.+++      ...   .+..|...|.+++|+|+ +.+|
T Consensus       102 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  181 (416)
T 2pm9_A          102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF  181 (416)
T ss_dssp             CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred             cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence             2 23334558899999999998 8999999999999999998886      333   34679999999999998 7899


Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC------cCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCC
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH------TLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLK  208 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~  208 (451)
                      ++++.||.|++||+++           ...+..+..|      ...|.+++|+|++. .++++++.|+   .|++||+++
T Consensus       182 ~~~~~dg~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKA-----------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-TRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             EEESSSSCEEEEETTT-----------TEEEEEECCCCCSSCCCCCEEEEEECSSCT-TEEEEEECCSSSCCCCEEETTS
T ss_pred             EEEcCCCCEEEEECCC-----------CCcceEEeccccccccCCceEEEEECCCCC-CEEEEEECCCCCceEEEEeCCC
Confidence            9999999999999965           2234444444      78999999999863 5899999999   999999998


Q ss_pred             C-ceeeeee--cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CE
Q 012996          209 G-RLLRNIV--FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DL  282 (451)
Q Consensus       209 ~-~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~  282 (451)
                      + .....+.  |...|.+++|+| ++.+|++++.||.|++||+.+.         ..+..+.+|...|++++|+| + .+
T Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCE
Confidence            6 5666665  788999999999 9999999999999999999886         55778889999999999999 6 89


Q ss_pred             EEEEcCCCcEEEEeCCCCceEEEee-----------------------------------cCCCCeeEEEEEecCceeee
Q 012996          283 LISGSEDGMVRVWDPITHNIVRMFR-----------------------------------LAKGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       283 l~s~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~v~~l~~s~~~~~l~~  327 (451)
                      |++++.||.|++||+.++.......                                   .|..++++++|+|+|++|++
T Consensus       321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~  400 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI  400 (416)
T ss_dssp             EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred             EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence            9999999999999998765433221                                   16678889999999999999


Q ss_pred             ccCCCCccccccCC
Q 012996          328 GSFSNPHTSSRRHG  341 (451)
Q Consensus       328 ~s~d~~i~iw~~~~  341 (451)
                      ++.|+.|++|++.+
T Consensus       401 ~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          401 TPDGKGVSITNPKI  414 (416)
T ss_dssp             CTTSSCBCCBCCCC
T ss_pred             eCCCCeEEEEEecc
Confidence            99999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-44  Score=323.27  Aligned_cols=302  Identities=16%  Similarity=0.173  Sum_probs=237.9

Q ss_pred             cCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce--ee-e-ec-CCCCeeEEEECCCCcEEE
Q 012996           22 SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EV-K-SL-PAEPIKPIAANSHGTYIA   96 (451)
Q Consensus        22 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~--~~-~-~~-~~~~v~~~~~~~~~~~l~   96 (451)
                      +.+.+..+.+   |...|.+++  |+|+  +|++++.| ++|++|++..+..  .. . .. |...|.+++|+|++++|+
T Consensus         3 ~~~~~~~~~~---h~~~v~~~~--~s~~--~las~~~D-~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la   74 (330)
T 2hes_X            3 SINLIKSLKL---YKEKIWSFD--FSQG--ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA   74 (330)
T ss_dssp             CCEEEEEEEC---CSSCEEEEE--EETT--EEEEEESS-SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred             ccccceeecc---CCCceeeec--cCCC--EEEEEcCC-CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence            3455666665   557788888  9887  88888888 9999999987532  21 1 23 888999999999999999


Q ss_pred             EeccCCCEEEEEcCC-------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996           97 GGGQSGDIYMWEVAS-------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (451)
Q Consensus        97 ~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  169 (451)
                      +|+.|+.|++||+..       .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||+....       .....+.
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-------~~~~~~~  147 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG-------EEYECIS  147 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-------CCCEEEE
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-------CCeEEEE
Confidence            999999999999853       34567788999999999999999999999999999999994310       1224566


Q ss_pred             cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--ceeeeee-cccceeEEEECCC--CCEEEEEeCCCcEEE
Q 012996          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYI  244 (451)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i  244 (451)
                      .+.+|...|.+++|+|++  .+|++++.|++|++||..++  +++..+. |...|.+++|+|+  +..|++|+.|+.|++
T Consensus       148 ~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i  225 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV  225 (330)
T ss_dssp             EECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred             EeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence            788999999999999988  89999999999999998776  4566665 8889999999998  678999999999999


Q ss_pred             EEccCCCCCCCCCCceeeeeecc-CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc--eEEE-eecCCC-CeeEEEEE
Q 012996          245 AALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRM-FRLAKG-PVNNILVV  319 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~s  319 (451)
                      ||+....... ...+.....+.+ |...|++++|+++.+|++++.||.|++||..+++  .+.. +..|.. .|.+++|+
T Consensus       226 w~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~  304 (330)
T 2hes_X          226 WKYMGDDEDD-QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL  304 (330)
T ss_dssp             EEEEEECTTS-CEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred             EEecCCCccc-cceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence            9997643111 111123344544 8999999999996699999999999999998774  3333 356776 89999999


Q ss_pred             e--cCceeeeccCCCCccccccCC
Q 012996          320 R--RPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       320 ~--~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      |  ++++|++|+.||.|++|++..
T Consensus       305 ~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          305 ELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             -----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEEecCCCcEEEEEecc
Confidence            9  789999999999999999764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-44  Score=331.31  Aligned_cols=311  Identities=18%  Similarity=0.242  Sum_probs=253.0

Q ss_pred             CCeEEEECccCceee-eeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-C-----------
Q 012996           13 TGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-----------   79 (451)
Q Consensus        13 g~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~-----------   79 (451)
                      ....+|+........ .+.....|...|.+++  |+|+|+++|+++ + +.+++|++.++....... +           
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--fspdg~~la~g~-~-~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~  115 (393)
T 1erj_A           40 DYYILYNPALPREIDVELHKSLDHTSVVCCVK--FSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLN  115 (393)
T ss_dssp             SCEEEECTTSCCCEEEEEEEEEECSSCCCEEE--ECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC------------
T ss_pred             ceEEEECCCCCcccCceeEEecCCCCEEEEEE--ECCCCCEEEEEc-C-CcEEEEEecCCCEEEEecCcccccccccccc
Confidence            345577755443221 1111113667788888  999999999876 4 899999998877654322 1           


Q ss_pred             -------CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           80 -------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        80 -------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                             ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus       116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~  195 (393)
T 1erj_A          116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  195 (393)
T ss_dssp             -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence                   1248999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeee--------ecccceeE
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI--------VFPSVIDA  223 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~i~~  223 (451)
                      ++           .....+. +...+.+++++| ++  .++++++.|+.|++||++++..+..+        .|...|.+
T Consensus       196 ~~-----------~~~~~~~-~~~~v~~~~~~~~~~--~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          196 TG-----------QCSLTLS-IEDGVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             TT-----------EEEEEEE-CSSCEEEEEECSTTC--CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             CC-----------eeEEEEE-cCCCcEEEEEECCCC--CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            52           2233333 566799999998 56  89999999999999999998877665        26778999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEccCCCCCCC---CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTS---SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      ++|+|++.+|++|+.||.|++||++.......   .........+.+|...|.+++|+| +.+|++|+.||.|++||+.+
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999999999999999986432111   111234557789999999999999 99999999999999999999


Q ss_pred             CceEEEeecCCCCeeEEEEEe------cCceeeeccCCCCccccccCC
Q 012996          300 HNIVRMFRLAKGPVNNILVVR------RPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~------~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ++++..+.+|.+.|.+++|++      ++.+|++|+.||.|++|+...
T Consensus       342 ~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999999999999999999986      688999999999999999764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-43  Score=321.53  Aligned_cols=264  Identities=17%  Similarity=0.293  Sum_probs=237.0

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-----eeee
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKS   77 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-----~~~~   77 (451)
                      .+|++|+ .||+|+|||+.+++.+..+..+   ...+.+++  |+|+++++++++.| +.|++|++.+...     ....
T Consensus        68 ~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~---~~~v~~~~--~s~~~~~l~s~~~d-~~v~iw~~~~~~~~~~~~~~~~  140 (340)
T 1got_B           68 RLLLSAS-QDGKLIIWDSYTTNKVHAIPLR---SSWVMTCA--YAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELA  140 (340)
T ss_dssp             SEEEEEE-TTTEEEEEETTTCCEEEEEECS---SSCEEEEE--ECTTSSEEEEEETT-CEEEEEETTTCSBSCEEEEEEE
T ss_pred             CEEEEEe-CCCcEEEEECCCCCcceEeecC---CccEEEEE--ECCCCCEEEEEeCC-CeEEEEECccCCCcceeEEEec
Confidence            3689999 9999999999999998888754   46688888  99999999999998 9999999986532     2234


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      .|...|.++.|++++. +++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+++    
T Consensus       141 ~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~----  215 (340)
T 1got_B          141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----  215 (340)
T ss_dssp             CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----
T ss_pred             CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----
Confidence            5889999999998875 88889999999999999999999999999999999999999999999999999999954    


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---cceeEEEECCCCCEEE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY  234 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~  234 (451)
                             ......+.+|...|.+++|+|++  .+|++++.||+|++||+++++.+..+.+.   ..|.+++|+|++.+|+
T Consensus       216 -------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  286 (340)
T 1got_B          216 -------GMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             -------CSEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             -------CeeEEEEcCCcCCEEEEEEcCCC--CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence                   44567788999999999999988  89999999999999999999888777644   4799999999999999


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      +|+.||.|++||+...         ..+..+.+|...|++++|+| +.+|++|+.||.|+|||
T Consensus       287 ~g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          287 AGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999875         45678889999999999999 99999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.4e-44  Score=323.47  Aligned_cols=291  Identities=11%  Similarity=0.155  Sum_probs=237.8

Q ss_pred             eeeeeecCCCCCCceEEecceE-----ee-ccCcccCCCCCCccEEEEECCCCc--------eeeeecCCCCeeEEEECC
Q 012996           25 EQLRYKSCASPPHGLACVGQRF-----LA-SSQLREQPSASSGSILYWSWSKPQ--------VEVKSLPAEPIKPIAANS   90 (451)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~-----~~-~~~~l~~~~~d~g~i~vw~~~~~~--------~~~~~~~~~~v~~~~~~~   90 (451)
                      ....+.+   |...|.+++  |     ++ ++++|++++.| ++|++||+....        ......|...|.+++|+|
T Consensus        13 ~~~~l~g---H~~~V~~~~--~~~s~~~~~d~~~l~sgs~D-~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~   86 (343)
T 2xzm_R           13 KRGILEG---HSDWVTSIV--AGFSQKENEDSPVLISGSRD-KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ   86 (343)
T ss_dssp             EEEEEEC---CSSCEEEEE--ECCCSSTTCCCCEEEEEETT-SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred             eeeeecc---chhhhhhee--eEEEeecCCCCCEEEEEcCC-CEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence            3445554   557788888  7     66 89999999998 999999987542        123346889999999999


Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                      ++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+...         .......
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~  157 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE---------CKFSSAE  157 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC---------EEEECCT
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC---------ceeeeec
Confidence            9999999999999999999999999999999999999999999999999999999999998531         1111222


Q ss_pred             ccCCcCceeEEEEeecCC--------eeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCc
Q 012996          171 FTGHTLRITDIVIGYGGV--------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~--------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                      ...|...|.+++|+|.+.        +.++++++.|+.|++||. .......+. |...|.+++|+|++++|++|+.||.
T Consensus       158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence            347899999999998752        258999999999999994 455555554 8889999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE--Eee-----------
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR--MFR-----------  307 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-----------  307 (451)
                      |++||+....        .....+ .+...|.+++|+| +.+++ ++.|+.|++||+.+++...  .+.           
T Consensus       237 v~iwd~~~~~--------~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  306 (343)
T 2xzm_R          237 LLIWDILNLT--------YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK  306 (343)
T ss_dssp             EEEEESSCCS--------SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred             EEEEECCCCc--------ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence            9999995432        112222 3456799999999 76665 5568889999998876544  443           


Q ss_pred             cCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +|...|.+++|+|+|++|++|+.||.|++|++..
T Consensus       307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            6778899999999999999999999999999764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=321.42  Aligned_cols=288  Identities=18%  Similarity=0.275  Sum_probs=232.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce---eeeecCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPA   80 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~---~~~~~~~   80 (451)
                      +||+|+ .|++|+|||+.++..........+|...|.+++  |+|++++|++++.| ++|++|+......   .....|.
T Consensus        30 ~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~l~s~s~D-~~v~iw~~~~~~~~~~~~~~~h~  105 (345)
T 3fm0_A           30 LLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA--WSPCGNYLASASFD-ATTCIWKKNQDDFECVTTLEGHE  105 (345)
T ss_dssp             CEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEECCC-EEEEEEECCCS
T ss_pred             EEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEE--ECCCCCEEEEEECC-CcEEEEEccCCCeEEEEEccCCC
Confidence            689999 999999999988875544333446778899999  99999999999998 9999999887653   2334688


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      ..|.+++|+|++++|++|+.|+.|++||+.++.   ++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+    
T Consensus       106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~----  181 (345)
T 3fm0_A          106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE----  181 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET----
T ss_pred             CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC----
Confidence            999999999999999999999999999998764   4567789999999999999999999999999999999854    


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---------------ceeeeee--cccc
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---------------RLLRNIV--FPSV  220 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~--~~~~  220 (451)
                           ........+.+|...|.+++|+|++  .+|++++.|++|++||....               +++..+.  |...
T Consensus       182 -----~~~~~~~~~~~h~~~v~~l~~sp~g--~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  254 (345)
T 3fm0_A          182 -----DDWVCCATLEGHESTVWSLAFDPSG--QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT  254 (345)
T ss_dssp             -----TEEEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred             -----CCEEEEEEecCCCCceEEEEECCCC--CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence                 2233456788999999999999998  89999999999999996432               1222222  6678


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEeCC
Q 012996          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd~~  298 (451)
                      |.+++|+|++..|++++.|+.|++|+....................+|...|++++|+| + .+|++|+.||+|++|++.
T Consensus       255 v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            99999999999999999999999999876532211111112233468999999999999 5 599999999999999999


Q ss_pred             CCceEEEe
Q 012996          299 THNIVRMF  306 (451)
Q Consensus       299 ~~~~~~~~  306 (451)
                      +++.+...
T Consensus       335 ~~~~~~~~  342 (345)
T 3fm0_A          335 RPEGLHHH  342 (345)
T ss_dssp             C-------
T ss_pred             CCCCcccc
Confidence            88776554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.6e-43  Score=317.67  Aligned_cols=304  Identities=18%  Similarity=0.252  Sum_probs=261.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----eee--
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKS--   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~~~--   77 (451)
                      +++++. .++.+.+|+...........   .|...|.+++  |+|+++++++++ + |.|++|++.++...    ...  
T Consensus        23 ~~~~~~-~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~--~~~~~~~l~~~~-d-g~i~iw~~~~~~~~~~~~~~~~~   94 (337)
T 1gxr_A           23 MQPVPF-PPDALIGPGIPRHARQINTL---NHGEVVCAVT--ISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCL   94 (337)
T ss_dssp             EEECCC-CTTSSSSTTCCSEEEEEEEE---CCSSCCCEEE--ECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECS
T ss_pred             EEEeec-CCCcEeccccCCccccceec---cCCCceEEEE--EecCCcEEEEcC-C-CeEEEEECCCCCceeeeeccccc
Confidence            344555 45555555544433333333   3667788888  999999999998 6 99999999865422    111  


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      .|...|.+++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|+|++++|++++.||.|++||+++  
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--  172 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--  172 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--
Confidence            578899999999999999999999999999999887  5667788999999999999999999999999999999954  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (451)
                               ......+..|...|.+++|++++  .++++++.||.|++||+++++.+..+.+...+.+++|+|+++++++
T Consensus       173 ---------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  241 (337)
T 1gxr_A          173 ---------QTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             ---------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ---------CceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE
Confidence                     44566778899999999999988  8999999999999999999999999889999999999999999999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCee
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN  314 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  314 (451)
                      ++.++.|++||+....          ...+..|...|.+++|+| +.+|++++.||.|++||+.+++.+... .|..+|.
T Consensus       242 ~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~  310 (337)
T 1gxr_A          242 GMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVL  310 (337)
T ss_dssp             EETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEE
T ss_pred             EcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEE
Confidence            9999999999998753          346778999999999999 999999999999999999999888554 5788999


Q ss_pred             EEEEEecCceeeeccCCCCcccccc
Q 012996          315 NILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       315 ~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      +++|+|++++|++++.||.+++|++
T Consensus       311 ~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          311 SCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999999999999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.6e-44  Score=332.69  Aligned_cols=309  Identities=14%  Similarity=0.126  Sum_probs=258.5

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP   82 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~   82 (451)
                      +|++++ .||.|++||+.+++....+..+    ..+....  |+++++++++++.+ |.|++||+.++..... ..|...
T Consensus        70 ~l~~~~-~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~--~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~~~  141 (420)
T 3vl1_A           70 HLYKAR-LDGHDFLFNTIIRDGSKMLKRA----DYTAVDT--AKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQAHVSE  141 (420)
T ss_dssp             TEEEEE-ETTEEEEEECCSEETTTTSCSC----CEEEEEE--ECSSSCEEEEEETT-SCEEEECTTSCEEEEETTSSSSC
T ss_pred             eEEEEE-cCCcEEEEEecccceeeEEecC----CceEEEE--EecCCCEEEEEECC-CCEEEEeCCCcceeeecccccCc
Confidence            478888 8999999999988776555432    3344445  89999999999988 9999999998877655 468999


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      |.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++        
T Consensus       142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--------  213 (420)
T 3vl1_A          142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG--------  213 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------
T ss_pred             cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999653        


Q ss_pred             ccccceeccc---CCcCceeEEE---------------------EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--
Q 012996          163 ASHLYLHSFT---GHTLRITDIV---------------------IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--  216 (451)
Q Consensus       163 ~~~~~~~~~~---~~~~~i~~i~---------------------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--  216 (451)
                         ..+..+.   .|...+.+++                     |++++  .++++++.||.|++||+++++.+..+.  
T Consensus       214 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          214 ---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG--KYVIAGHVSGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             ---EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT--EEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred             ---ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC--CEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence               2222332   2444444444                     45666  899999999999999999998877775  


Q ss_pred             cccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEecCCEEEEEcCCCcEEE
Q 012996          217 FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRV  294 (451)
Q Consensus       217 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~i  294 (451)
                      +...+.+++|+|++. +|++|+.||.|++||+++..        .++..+.. |...|+++.+.++.+|++++.||.|++
T Consensus       289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--------CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEE
T ss_pred             cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--------CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEE
Confidence            678899999999998 99999999999999998864        33445555 677888887766889999999999999


Q ss_pred             EeCCCC---------ceEEEeecCCCCeeEEEEEecCc---eeeeccCCCCccccccCC
Q 012996          295 WDPITH---------NIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       295 wd~~~~---------~~~~~~~~~~~~v~~l~~s~~~~---~l~~~s~d~~i~iw~~~~  341 (451)
                      ||+...         .....+..|.+.|.+++|+|++.   .|++++.+|.+.+|++..
T Consensus       361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            998763         22334567888999999999999   788888899999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-43  Score=317.56  Aligned_cols=295  Identities=17%  Similarity=0.294  Sum_probs=253.7

Q ss_pred             cCceeeeeecCCCCCCceEEecceEeec-cCcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcE
Q 012996           22 SGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTY   94 (451)
Q Consensus        22 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~   94 (451)
                      +.....+++   +|...|.+++  |+|+ +++|++++.| |+|+|||+.+.+.      .....|...|.+++|+|++++
T Consensus        27 ~~~l~~tL~---GH~~~V~~v~--~sp~~~~~l~S~s~D-~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~  100 (340)
T 4aow_A           27 QMTLRGTLK---GHNGWVTQIA--TTPQFPDMILSASRD-KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF  100 (340)
T ss_dssp             EEEEEEEEC---CCSSCEEEEE--ECTTCTTEEEEEETT-SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ceEEEEEEC---CccCCEEEEE--EeCCCCCEEEEEcCC-CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE
Confidence            334445565   4667899999  9998 5788899888 9999999876542      123457899999999999999


Q ss_pred             EEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996           95 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus        95 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      |++|+.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+..          .........+|
T Consensus       101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~----------~~~~~~~~~~~  170 (340)
T 4aow_A          101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG----------VCKYTVQDESH  170 (340)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----------CEEEEECSSSC
T ss_pred             EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC----------CceEEEEeccc
Confidence            99999999999999999988888888999999999999999999999999999999854          23344566789


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (451)
                      ...+..++|++++...++++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++|+.||.|++||++..   
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---  247 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---  247 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---
Confidence            999999999988776789999999999999999999888876 8889999999999999999999999999999876   


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEee---------cCCCCeeEEEEEecCce
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR---------LAKGPVNNILVVRRPLY  324 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~s~~~~~  324 (451)
                            ..+..+. +...|.++.|+|+..+++++.|+.|++||+.++..+..+.         .|...|++++|+|++++
T Consensus       248 ------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          248 ------KHLYTLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             ------EEEEEEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             ------ceeeeec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence                  4455554 4468999999996667778889999999999888776654         57889999999999999


Q ss_pred             eeeccCCCCccccccCCC
Q 012996          325 LNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       325 l~~~s~d~~i~iw~~~~~  342 (451)
                      |++|+.||.|++|++.++
T Consensus       321 l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          321 LFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEEEETTSCEEEEEEEC-
T ss_pred             EEEEeCCCEEEEEeCCCc
Confidence            999999999999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.3e-43  Score=312.20  Aligned_cols=251  Identities=17%  Similarity=0.227  Sum_probs=224.4

Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      ...|.+.|.+++|+|++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++||+.+  
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~--   86 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--   86 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--
Confidence            345789999999999999999999999999999999999999999999999999999999999999999999999954  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECC-CCCE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDP-AEHV  232 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~-~~~~  232 (451)
                               ...+..+.+|...|.+++|+|++  .+|++|+.|++|++||++++.. ...+. |...|.+++|+| ++..
T Consensus        87 ---------~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           87 ---------GEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             ---------CCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             ---------CcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence                     45677788999999999999998  8999999999999999988744 34444 788999999999 6789


Q ss_pred             EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      |++|+.|+.|++||++...        .......+|...+..+.|+|   +.+|++|+.||+|++||+.+++++.++.+|
T Consensus       156 l~sgs~D~~v~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h  227 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH  227 (304)
T ss_dssp             EEEEETTSEEEEEETTCSS--------CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEeCCCeEEEEECCCCC--------ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence            9999999999999997754        22233446778899999987   569999999999999999999999999999


Q ss_pred             CCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCc
Q 012996          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~  347 (451)
                      ...|.+++|+|++++|++++.||.|++|+..+.++...
T Consensus       228 ~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (304)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence            99999999999999999999999999999887655433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.2e-42  Score=312.89  Aligned_cols=264  Identities=20%  Similarity=0.302  Sum_probs=235.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-------eeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVK   76 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-------~~~~   76 (451)
                      +||||+ .||+|+|||..+++....+..+.   ..+.+++  |+|+|.++++++.| +.+++|++....       ....
T Consensus        78 ~l~s~s-~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~--~sp~g~~lasg~~d-~~i~v~~~~~~~~~~~~~~~~~~  150 (354)
T 2pbi_B           78 RIVSSS-QDGKVIVWDSFTTNKEHAVTMPC---TWVMACA--YAPSGCAIACGGLD-NKCSVYPLTFDKNENMAAKKKSV  150 (354)
T ss_dssp             EEEEEE-TTSEEEEEETTTCCEEEEEECSS---SCCCEEE--ECTTSSEEEEESTT-SEEEEEECCCCTTCCSGGGCEEE
T ss_pred             EEEEEe-CCCeEEEEECCCCCcceEEecCC---CCEEEEE--ECCCCCEEEEeeCC-CCEEEEEEeccccccccccceee
Confidence            689999 99999999999999888877644   5577777  99999999999998 999999986431       2233


Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcch
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~  154 (451)
                      ..|...|.+++|+|++..|++|+.||.|++||+.+++.+..+.+|...|.+++|+|  ++++|++|+.||.|++||+++ 
T Consensus       151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-  229 (354)
T 2pbi_B          151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-  229 (354)
T ss_dssp             EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-
T ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-
Confidence            45889999999999999999999999999999999999999999999999999987  568999999999999999954 


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCC
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEH  231 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~  231 (451)
                                ...+..+.+|...|.+++|+|++  .+|++++.|++|++||++.++.+..+..   ...+.+++|+|++.
T Consensus       230 ----------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  297 (354)
T 2pbi_B          230 ----------GQCVQAFETHESDVNSVRYYPSG--DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR  297 (354)
T ss_dssp             ----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             ----------CcEEEEecCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence                      44667788999999999999988  8999999999999999999887766653   34688999999999


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      +|++|+.|+.|++||+.++         ..+..+.+|...|++++|+| +.+|++|+.||+|++|+
T Consensus       298 ~l~~g~~d~~i~vwd~~~~---------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          298 LLFAGYNDYTINVWDVLKG---------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCcEEEEECCCC---------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999876         44667889999999999999 99999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=314.52  Aligned_cols=270  Identities=17%  Similarity=0.182  Sum_probs=214.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeee--------eecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLR--------YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV   75 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~   75 (451)
                      +|++++  |+++++||.........        ......+...|.+++  |+|++ .+++++.| |+|+|||+.+++...
T Consensus        44 ~l~~~s--d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~-~l~~~s~d-g~v~lWd~~~~~~~~  117 (344)
T 4gqb_B           44 LLLGAS--SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLT--WVGER-GILVASDS-GAVELWELDENETLI  117 (344)
T ss_dssp             EEEEEE--CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEE--EETTT-EEEEEETT-SEEEEEEECTTSSCE
T ss_pred             EEEEEe--CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEE--EeCCC-eEEEEECC-CEEEEEeccCCCcee
Confidence            455555  77888887431110000        000011335688888  99986 56677777 999999998776432


Q ss_pred             -----eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEe
Q 012996           76 -----KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIW  149 (451)
Q Consensus        76 -----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vw  149 (451)
                           ...|.+.|++++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|.+++|+|++ .+|++++.||.|++|
T Consensus       118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence                 23588999999999999999999999999999999999999999999999999999987 578999999999999


Q ss_pred             eCcchhhhhhhhcccccceec--ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEE
Q 012996          150 SLLTVFEECESQRASHLYLHS--FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIAL  226 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~  226 (451)
                      |+++.           .....  ...|...+.+++|++++. .++++|+.||.|++||+++++++..+. |...|.+++|
T Consensus       198 d~~~~-----------~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f  265 (344)
T 4gqb_B          198 DTRCP-----------KPASQIGCSAPGYLPTSLAWHPQQS-EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF  265 (344)
T ss_dssp             ETTSS-----------SCEEECC----CCCEEEEEECSSCT-TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred             ccccc-----------ceeeeeecceeeccceeeeecCCCC-cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            99652           22232  345666789999998653 789999999999999999999998887 8899999999


Q ss_pred             CCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCCc
Q 012996          227 DPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       227 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~  301 (451)
                      +|++ .+|++|+.|+.|++||+.++.          +..+.+|...|++++|+| +. +|++|+.||+|++|++.+..
T Consensus       266 sp~g~~~lasgs~D~~i~vwd~~~~~----------~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          266 SPHSVPFLASLSEDCSLAVLDSSLSE----------LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTCCE----------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             ccCCCeEEEEEeCCCeEEEEECCCCc----------EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            9987 579999999999999998752          446789999999999999 54 67799999999999998653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-42  Score=313.26  Aligned_cols=294  Identities=15%  Similarity=0.200  Sum_probs=257.9

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      +|...|.+++  |+|+++++++++.| |.|++||+.+++..... .|...|.+++|+|++++|++++.||.|++||+.++
T Consensus        30 ~h~~~v~~~~--~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           30 GHERPLTQVK--YNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             CCSSCEEEEE--ECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EeeceEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            4668899999  99999999999988 99999999887766544 48899999999999999999999999999999999


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCC-----CcEEEeeCcchhhhhhhhcccccceecccCCcC--ceeEEEEee
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGY  185 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~  185 (451)
                      +.+..+. |...|.+++|+|++++|++++.+     |.|.+||+...................+..|..  .+.+++|++
T Consensus       107 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (369)
T 3zwl_B          107 QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST  185 (369)
T ss_dssp             CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred             cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence            9988887 88999999999999999999999     999999997643322222222334455566666  999999999


Q ss_pred             cCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee
Q 012996          186 GGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (451)
Q Consensus       186 ~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (451)
                      ++  .++++++.||.|++||+++ ++.+..+. +...|.+++|+|++.+|++++.||.|++||+.+..         .+.
T Consensus       186 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~  254 (369)
T 3zwl_B          186 KG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ---------VLK  254 (369)
T ss_dssp             GG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------EEE
T ss_pred             CC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc---------eee
Confidence            88  8999999999999999998 67777776 78899999999999999999999999999998863         344


Q ss_pred             eeccCCcceeEEEEec-CCEEEEEcCCC--------------cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996          264 SLSDHSKAVTCLAYST-GDLLISGSEDG--------------MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       264 ~~~~~~~~v~~~~~~~-~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (451)
                      .+. +...+.+++|+| +.++++++.++              .+++||..+++.+..+..|.+.|++++|+|++++|+++
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          255 KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence            444 788999999999 99999999988              89999999999999999999999999999999999999


Q ss_pred             cCCCCccccccCCCC
Q 012996          329 SFSNPHTSSRRHGSQ  343 (451)
Q Consensus       329 s~d~~i~iw~~~~~~  343 (451)
                      +.||.|++|++....
T Consensus       334 ~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          334 GEDGFIRLHHFEKSY  348 (369)
T ss_dssp             ETTSEEEEEEECHHH
T ss_pred             cCCCeEEEEECcccc
Confidence            999999999987543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-42  Score=317.12  Aligned_cols=270  Identities=20%  Similarity=0.339  Sum_probs=233.4

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--------eee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEV   75 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------~~~   75 (451)
                      +|++|+ .||+|+|||+.+++....+..|.   ..|.+++  |+|+|+++++++.| +.+++|++....        ...
T Consensus        80 ~l~s~s-~D~~v~iWd~~~~~~~~~~~~h~---~~v~~~~--~s~~g~~las~~~d-~~v~iw~~~~~~~~~~~~~~~~~  152 (380)
T 3iz6_a           80 WIVSAS-QDGRLIVWNALTSQKTHAIKLHC---PWVMECA--FAPNGQSVACGGLD-SACSIFNLSSQADRDGNMPVSRV  152 (380)
T ss_dssp             CEEEEE-TTSEEEEEETTTTEEEEEEECCC---TTCCCCE--ECTTSSEEEECCSS-SCCEEEECCCCSSCCCSSTTCCB
T ss_pred             EEEEEe-CCCeEEEEECCCCccceEEecCC---CCEEEEE--ECCCCCEEEEeeCC-CcEEEEECCCCccccCCccceee
Confidence            589999 99999999999999998888765   4566666  99999999999998 999999987532        123


Q ss_pred             eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeee-----ccccCCeeEEEEcc-CCcEEEEeeCCCcEEE
Q 012996           76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRI  148 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v  148 (451)
                      ...|.+.|.++.|+|+ +..|++|+.|+.|++||+.+++.+..+     .+|...|.++.|++ ++.+|++|+.||.|++
T Consensus       153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~  232 (380)
T 3iz6_a          153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL  232 (380)
T ss_dssp             CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred             ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence            3457889999999996 457999999999999999999988776     67999999999987 8899999999999999


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--------cc
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------SV  220 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~  220 (451)
                      ||++.          ....+..+.+|...|.+++|+|++  .+|++++.||+|++||+++++.+..+...        ..
T Consensus       233 wd~~~----------~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          233 WDLRI----------TSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EETTT----------TCCCCEEECCCSSCCCEEEECTTS--SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred             EECCC----------CCcceEEECCcCCCeEEEEEecCC--CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence            99953          234567788999999999999998  89999999999999999999888776521        24


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee----ccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw  295 (451)
                      +.+++|+|++++|++|+.||.|++||+....         .+..+    .+|...|++++|+| +.+|++|+.||+|++|
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEETTTCC---------EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECCCCc---------eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence            8999999999999999999999999997753         22233    67999999999999 9999999999999999


Q ss_pred             eCCCCc
Q 012996          296 DPITHN  301 (451)
Q Consensus       296 d~~~~~  301 (451)
                      ++...+
T Consensus       372 ~~~~~~  377 (380)
T 3iz6_a          372 AFSGHR  377 (380)
T ss_dssp             ECCSSS
T ss_pred             ecCCCc
Confidence            987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.1e-41  Score=315.19  Aligned_cols=300  Identities=22%  Similarity=0.398  Sum_probs=263.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+|++|+ .||+|++||+.+++.+..+.+   |...|.++.  |+  +..+++++.| |.|++||+.+++.... ..|..
T Consensus       130 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~--~~--~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~h~~  200 (445)
T 2ovr_B          130 NRIVSGS-DDNTLKVWSAVTGKCLRTLVG---HTGGVWSSQ--MR--DNIIISGSTD-RTLKVWNAETGECIHTLYGHTS  200 (445)
T ss_dssp             TEEEEEE-TTSCEEEEETTTCCEEEECCC---CSSCEEEEE--EE--TTEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEE-CCCcEEEEECCCCcEEEEEcC---CCCCEEEEE--ec--CCEEEEEeCC-CeEEEEECCcCcEEEEECCCCC
Confidence            3688999 999999999999999988875   456788877  75  6788999888 9999999998876544 45788


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .|.+++|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.++.|  ++.++++|+.||.|++||+++        
T Consensus       201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~--------  268 (445)
T 2ovr_B          201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET--------  268 (445)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--------
T ss_pred             cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--------
Confidence            99999995  678999999999999999999999999999999999999  688999999999999999954        


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCC
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                         ...+..+.+|...|.++.+  ++  .++++++.||.|++||+++++.+..+. +...+.++.+  +++++++|+.||
T Consensus       269 ---~~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  339 (445)
T 2ovr_B          269 ---ETCLHTLQGHTNRVYSLQF--DG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADS  339 (445)
T ss_dssp             ---TEEEEEECCCSSCEEEEEE--CS--SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred             ---CcEeEEecCCCCceEEEEE--CC--CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCC
Confidence               4466778899999999998  44  799999999999999999999888876 6677877776  567999999999


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeecc---CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEe-----ecCCCC
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSD---HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMF-----RLAKGP  312 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~  312 (451)
                      .|++||++++         ..+..+.+   |...|++++|+ +++|++|+.||.|++||+.+++.+..+     ..|.+.
T Consensus       340 ~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  409 (445)
T 2ovr_B          340 TVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV  409 (445)
T ss_dssp             CEEEEETTTC---------CEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred             eEEEEECCCC---------cEEEEEccCCCCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCce
Confidence            9999999876         34555554   88999999997 689999999999999999999999988     477889


Q ss_pred             eeEEEEEecCceeeeccCCCC----ccccccCCC
Q 012996          313 VNNILVVRRPLYLNLGSFSNP----HTSSRRHGS  342 (451)
Q Consensus       313 v~~l~~s~~~~~l~~~s~d~~----i~iw~~~~~  342 (451)
                      |++++|+|++.+|++++.||.    +.+||+...
T Consensus       410 v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          410 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999999999999998    999998753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-41  Score=306.29  Aligned_cols=274  Identities=16%  Similarity=0.255  Sum_probs=217.5

Q ss_pred             EEeecCCCCCCeEEEECccCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC-------c-e
Q 012996            4 LIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-------Q-V   73 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-------~-~   73 (451)
                      +||+|+ .|++|++||+.++.  ....+. ...|...|.+++  |+|++++|++++.| ++|++|+....       . .
T Consensus        26 ~las~~-~D~~i~lw~~~~~~~~~~~~~~-~~~h~~~v~~v~--~sp~~~~las~s~D-~~v~iw~~~~~~~~~~~~~~~  100 (330)
T 2hes_X           26 ILATGS-TDRKIKLVSVKYDDFTLIDVLD-ETAHKKAIRSVA--WRPHTSLLAAGSFD-STVSIWAKEESADRTFEMDLL  100 (330)
T ss_dssp             EEEEEE-SSSCEEEEECSSSCCEEEEEEC-TTCCCSCEEEEE--ECTTSSEEEEEETT-SCEEEEEC-------CCCEEE
T ss_pred             EEEEEc-CCCEEEEEEecCCCeEEEEEEe-cCCccCCEEEEE--ECCCCCEEEEEeCC-CcEEEEEcccCcCccccceeE
Confidence            689999 99999999998753  333331 223778899999  99999999999998 99999998532       1 1


Q ss_pred             eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        74 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      .....|...|.+++|+|++++|++|+.|+.|++||+...    +++..+.+|...|.+++|+|++.+|++|+.|+.|++|
T Consensus       101 ~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW  180 (330)
T 2hes_X          101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW  180 (330)
T ss_dssp             EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence            223458899999999999999999999999999999432    4567788999999999999999999999999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--------ceeeeee--ccc
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------RLLRNIV--FPS  219 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~--~~~  219 (451)
                      |+.+         ....++..+.+|...|.+++|++++.+..|++++.|++|++||+..+        .....+.  |..
T Consensus       181 ~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~  251 (330)
T 2hes_X          181 KDYD---------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR  251 (330)
T ss_dssp             EEET---------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred             ECCC---------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence            9854         12345677889999999999999854478999999999999998754        2333333  678


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee-eeeccCCc-ceeEEEEec---CCEEEEEcCCCcEEE
Q 012996          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSK-AVTCLAYST---GDLLISGSEDGMVRV  294 (451)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~---~~~l~s~~~dg~i~i  294 (451)
                      .|.+++|++++ +|++++.||.|++||...+.       +... ....+|.. .|++++|+|   +.+|++|+.||+|++
T Consensus       252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~-------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~  323 (330)
T 2hes_X          252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGE-------WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF  323 (330)
T ss_dssp             CEEEEEECTTS-CEEEEETTSCEEEEEEETTE-------EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred             ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-------eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence            89999999765 89999999999999987642       1222 23457877 899999998   578999999999999


Q ss_pred             EeCCC
Q 012996          295 WDPIT  299 (451)
Q Consensus       295 wd~~~  299 (451)
                      ||+..
T Consensus       324 W~~~~  328 (330)
T 2hes_X          324 WSLEK  328 (330)
T ss_dssp             EEC--
T ss_pred             EEecc
Confidence            99864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-41  Score=314.80  Aligned_cols=295  Identities=18%  Similarity=0.199  Sum_probs=250.9

Q ss_pred             cCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-------eeeeecCCCCeeEEEECCC----C---cEEE
Q 012996           31 SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVKSLPAEPIKPIAANSH----G---TYIA   96 (451)
Q Consensus        31 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-------~~~~~~~~~~v~~~~~~~~----~---~~l~   96 (451)
                      ...+|...|.+++  |+|  +++++++.| |.|++|++.+..       ......|...|.+++|+|+    +   ++|+
T Consensus        11 ~~~~h~~~i~~~~--~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           11 AGKAHDADIFSVS--ACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             ESSCSSSCEEEEE--ECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhcCeEEEE--ecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3446778899999  988  789999888 999999999876       4455668899999999999    9   9999


Q ss_pred             EeccCCCEEEEEcCCCcc-----eeeeccc-----cCCeeEEEEc----cCCcE-EEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           97 GGGQSGDIYMWEVASGRL-----LKKWHAH-----YRAVTCLVFS----EDGSF-LISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        97 ~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      +++.||.|++||+.+++.     +..+..|     ...|.+++|+    |++++ |++++.||.|++||+.+........
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999999887     8888888     5999999999    99999 9999999999999996511100000


Q ss_pred             cccccceecc-------cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-------ccceeEEEEC
Q 012996          162 RASHLYLHSF-------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALD  227 (451)
Q Consensus       162 ~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~  227 (451)
                      .........+       ..|...|.+++|++++   ++++++.||.|++||+++++.+..+..       ...+.+++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            0001111133       4588999999999875   899999999999999999998888874       8899999999


Q ss_pred             CCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeecc-------------CCcceeEEEEec-CCEEEEEcCCC
Q 012996          228 PAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSD-------------HSKAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       228 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      |++.+|++++.|   |.|++||+.+.         ..+..+.+             |...|.+++|+| +.+|++++.||
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTC---------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCC---------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            999999999999   99999999876         44666777             999999999999 99999999999


Q ss_pred             cEEEEeCCCCceEEEee------cC---------------CCCeeEEEEEecC----------ceeeeccCCCCcccccc
Q 012996          291 MVRVWDPITHNIVRMFR------LA---------------KGPVNNILVVRRP----------LYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       291 ~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~s~~~----------~~l~~~s~d~~i~iw~~  339 (451)
                      .|++||+.+++++..+.      .|               ..+|++++|+|++          ++|++++.||.|++|++
T Consensus       314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence            99999999999999999      88               9999999999998          79999999999999998


Q ss_pred             CCC
Q 012996          340 HGS  342 (451)
Q Consensus       340 ~~~  342 (451)
                      .++
T Consensus       394 ~~g  396 (397)
T 1sq9_A          394 AGG  396 (397)
T ss_dssp             EC-
T ss_pred             CCC
Confidence            754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-42  Score=321.06  Aligned_cols=296  Identities=15%  Similarity=0.217  Sum_probs=250.6

Q ss_pred             ceEEecceEeeccC-cccCC----------CCCCccEEEEECCCCc---eeeeecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996           38 GLACVGQRFLASSQ-LREQP----------SASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGD  103 (451)
Q Consensus        38 ~v~~~~~~~~~~~~-~l~~~----------~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  103 (451)
                      .+.+++  |+|+++ +++++          +.| +.|++||+.++.   ......|...|.+++|+|++++|++|+.||.
T Consensus        14 ~v~~~~--~sp~g~~~l~~g~~~g~~~~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           14 RTATFA--WSHDKIPLLVSGTVSGTVDANFSTD-SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             ESCBCC--BCSSSSCEEEEBCBSSCCCSSCCCC-CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hcceEe--eCCCCCCEEEEEecCcccccccCCC-CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            355666  999987 77777          566 999999998765   3334457889999999999999999999999


Q ss_pred             EEEEEcCC----CcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          104 IYMWEVAS----GRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       104 i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      |++||+.+    .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.+.......  ...........|...|
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN--YTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT--CCCBCCCCSCCSSCCC
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc--ccccccccccCCCCCe
Confidence            99999987    3577888999999999999998 899999999999999999763210000  0111223456799999


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-------ccceeEEEECCCC-CEEEEEeCCC---cEEEEEc
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALDPAE-HVFYAGSRDG---SIYIAAL  247 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~  247 (451)
                      .+++|++++. .++++++.||.|++||+++++.+..+..       ...+.+++|+|++ .++++++.|+   .|++||+
T Consensus       169 ~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          169 ISLAWNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             CEEEECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             eEEEeCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            9999999832 7999999999999999999998888773       6789999999987 6899999998   9999999


Q ss_pred             cCCCCCCCCCCceeeeeec-cCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC-c
Q 012996          248 NAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-L  323 (451)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~  323 (451)
                      +...        .+...+. +|...|++++|+|  +.+|++++.||.|++||+.+++++..+..|.++|++++|+|++ .
T Consensus       248 ~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  319 (416)
T 2pm9_A          248 RNAN--------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD  319 (416)
T ss_dssp             TSTT--------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred             CCCC--------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence            8853        3455666 8999999999998  8899999999999999999999999999999999999999999 8


Q ss_pred             eeeeccCCCCccccccCCCCCCCc
Q 012996          324 YLNLGSFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       324 ~l~~~s~d~~i~iw~~~~~~~~~~  347 (451)
                      +|++++.||.|++|++........
T Consensus       320 ~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          320 LFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             EEEECCSSSEEEEEESCCCCCSSC
T ss_pred             EEEEEecCCcEEEEEccCCCCCcc
Confidence            999999999999999987655443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.8e-42  Score=313.60  Aligned_cols=291  Identities=13%  Similarity=0.169  Sum_probs=243.0

Q ss_pred             CCCCceEEecceEeeccCcccCCCCC---CccEEEEECCCCceee--eecCCCCeeEEEECCC---CcEEEEeccCCCEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEV--KSLPAEPIKPIAANSH---GTYIAGGGQSGDIY  105 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d---~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~  105 (451)
                      +|...|.+++  |+|++..+++++..   ||.|++||+.++....  ...|...|.+++|+|+   +.+|++|+.||.|+
T Consensus        16 ~h~~~v~~~~--~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~   93 (357)
T 3i2n_A           16 GFNYTVFDCK--WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH   93 (357)
T ss_dssp             ECSSCEEEEE--ECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred             CCCCceEEEE--EcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence            4678899999  99999766555432   4999999999877643  3357889999999998   69999999999999


Q ss_pred             EEEcCCCc-ceeeeccccCCeeEEEE------ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC--
Q 012996          106 MWEVASGR-LLKKWHAHYRAVTCLVF------SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--  176 (451)
Q Consensus       106 iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--  176 (451)
                      +||+.+++ .+..+.+|...|.++.|      +|++++|++++.||.|++||+.+.          ......+..|.+  
T Consensus        94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~~  163 (357)
T 3i2n_A           94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK----------DDPVANMEPVQGEN  163 (357)
T ss_dssp             EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC----------SSCSEEECCCTTSC
T ss_pred             EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC----------CCcceeccccCCCC
Confidence            99999988 88899999999999955      678999999999999999999652          113344444433  


Q ss_pred             --ceeEEE----EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC---CCCEEEEEeCCCcEEEEEc
Q 012996          177 --RITDIV----IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAAL  247 (451)
Q Consensus       177 --~i~~i~----~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~  247 (451)
                        .+.+++    |++++  .++++++.||.|++||+++++......+...+.+++|+|   ++.+|++++.||.|++||+
T Consensus       164 ~~~v~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEE--RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCCEEEEEEECCCC-CC--CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CCceEEEEEEeccCCCC--CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence              788888    56666  899999999999999999999887777899999999999   9999999999999999999


Q ss_pred             cCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCC-------------------ceEEEe
Q 012996          248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH-------------------NIVRMF  306 (451)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~-------------------~~~~~~  306 (451)
                      +.......    .....+.+|...|++++|+| +. +|++|+.||.|++||+.++                   +++..+
T Consensus       242 ~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          242 RTQHPTKG----FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEETTTE----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             cCCCcccc----eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            87532110    11223458999999999999 76 8999999999999998754                   467788


Q ss_pred             ecCCCCeeEEEEEecCceee-eccCCCCccccccCCC
Q 012996          307 RLAKGPVNNILVVRRPLYLN-LGSFSNPHTSSRRHGS  342 (451)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~-~~s~d~~i~iw~~~~~  342 (451)
                      ..|.++|++++|+|++++|+ +++.||.+++|++...
T Consensus       318 ~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            89999999999999999998 8999999999998753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.1e-41  Score=302.02  Aligned_cols=275  Identities=19%  Similarity=0.313  Sum_probs=230.3

Q ss_pred             EEEeecCCCCCCeEEEECccC-----ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-
Q 012996            3 LLIASSSVADTGIGCWDLESG-----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-   76 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-   76 (451)
                      .+|++|+ .|++|++||+.+.     ..+..+.+   |...|.+++  |+|+++++++++.| ++|++||+.+++.... 
T Consensus        31 ~~l~s~s-~D~~v~~W~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~s~dg~~l~s~s~D-~~v~~wd~~~~~~~~~~  103 (319)
T 3frx_A           31 NLLLSAS-RDKTLISWKLTGDDQKFGVPVRSFKG---HSHIVQDCT--LTADGAYALSASWD-KTLRLWDVATGETYQRF  103 (319)
T ss_dssp             TEEEEEE-TTSEEEEEEEEEETTEEEEEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred             cEEEEec-CCccEEEecCCCCCccccccceEEeC---CcccEEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCCeeEEE
Confidence            4789999 9999999998643     34455554   567788888  99999999999998 9999999998876543 


Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC------CcEEEEeeCCCcEEEee
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWS  150 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd  150 (451)
                      ..|...|.+++|+|++.+|++|+.|+.|++||+. +..+..+.+|...|.++.|+|.      +..|++++.|+.|++||
T Consensus       104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd  182 (319)
T 3frx_A          104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN  182 (319)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred             ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence            5688999999999999999999999999999985 5677888899999999999984      44899999999999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      +.+           ......+.+|...|.+++|+|++  .+|++++.||.|++||+.+++.+..+.....+.+++|+|++
T Consensus       183 ~~~-----------~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~  249 (319)
T 3frx_A          183 LNQ-----------FQIEADFIGHNSNINTLTASPDG--TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR  249 (319)
T ss_dssp             TTT-----------TEEEEEECCCCSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS
T ss_pred             CCc-----------chhheeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC
Confidence            954           44566788999999999999998  89999999999999999999999999888899999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~  300 (451)
                      .+|++++.+ .+++|++......... ..........|...+.+++|+| +++|++|+.||.|++||+.++
T Consensus       250 ~~la~~~~~-~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          250 YWLAAATAT-GIKVFSLDPQYLVDDL-RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SEEEEEETT-EEEEEEETTEEEEEEE-CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CEEEEEcCC-CcEEEEeCcCeeeecc-CccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            999988765 4999998764210000 0000011234567899999999 999999999999999998654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.3e-42  Score=311.50  Aligned_cols=275  Identities=16%  Similarity=0.202  Sum_probs=219.5

Q ss_pred             EEEeecCCC------CCCeEEEECccCceeeeeec-CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-
Q 012996            3 LLIASSSVA------DTGIGCWDLESGAEQLRYKS-CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-   74 (451)
Q Consensus         3 ~~l~s~~~~------dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-   74 (451)
                      .+||+|+ .      |+.|++|+..++.....+.. ...|...|.+++  |+|++.+++ ++.+ |+|+|||+.+++.. 
T Consensus        55 ~~las~s-~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~s~d~~~l~-~s~d-g~v~lWd~~~~~~~~  129 (357)
T 4g56_B           55 ALLLAAS-SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA--WVSEKGILV-ASDS-GAVELWEILEKESLL  129 (357)
T ss_dssp             CEEEEEE-CSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE--EETTTEEEE-EETT-SCEEEC--------C
T ss_pred             CEEEEEc-CCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE--EcCCCCEEE-EECC-CEEEEeeccccceeE
Confidence            3688888 6      77899999888766544321 124567799999  999987664 5556 99999999876533 


Q ss_pred             ----eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEe
Q 012996           75 ----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIW  149 (451)
Q Consensus        75 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vw  149 (451)
                          ....|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++. ++++++.||.|++|
T Consensus       130 ~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w  209 (357)
T 4g56_B          130 VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW  209 (357)
T ss_dssp             CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred             EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence                2235788999999999999999999999999999999999999999999999999999774 78999999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP  228 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~  228 (451)
                      |++++         .......+..|...+.+++|+|++. .+|++|+.|+.|++||+++++.+..+. +...|.+++|+|
T Consensus       210 d~~~~---------~~~~~~~~~~~~~~v~~v~~sp~~~-~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp  279 (357)
T 4g56_B          210 DTRKP---------KPATRIDFCASDTIPTSVTWHPEKD-DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSY  279 (357)
T ss_dssp             CTTSS---------SCBCBCCCTTCCSCEEEEEECTTST-TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECS
T ss_pred             ECCCC---------ceeeeeeeccccccccchhhhhccc-ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcC
Confidence            99652         2222334456788899999998753 689999999999999999999888887 788999999999


Q ss_pred             CC-CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce
Q 012996          229 AE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI  302 (451)
Q Consensus       229 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~  302 (451)
                      ++ ++|++|+.|+.|++||++++         +.+ ...+|...|++++|+|  +.+|++|+.||+|++|++.+...
T Consensus       280 ~~~~~lasgs~D~~i~iwd~~~~---------~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          280 HSSPFLASISEDCTVAVLDADFS---------EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             SSSCCEEEEETTSCEEEECTTSC---------EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC---------cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            87 57999999999999999875         333 3458999999999998  78999999999999999976433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.2e-42  Score=314.92  Aligned_cols=297  Identities=13%  Similarity=0.121  Sum_probs=241.5

Q ss_pred             ECccCceeeeeecCCCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeeee---cCCCCeeEEEECC-CCc
Q 012996           19 DLESGAEQLRYKSCASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANS-HGT   93 (451)
Q Consensus        19 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~~---~~~~~v~~~~~~~-~~~   93 (451)
                      ++.+......+.   +|...|.+++  |+|++ +++++++.| |.|++||+.++......   .|...|.+++|+| +++
T Consensus        59 ~~~~~~~~~~~~---~h~~~v~~~~--~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  132 (383)
T 3ei3_B           59 SLKSYKLHRTAS---PFDRRVTSLE--WHPTHPTTVAVGSKG-GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN  132 (383)
T ss_dssp             HHTTCEEEEEEC---CCSSCEEEEE--ECSSCTTEEEEEEBT-SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred             cccccceEEecc---CCCCCEEEEE--ECCCCCCEEEEEcCC-CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC
Confidence            334445555554   4668899999  99999 889999888 99999999977765443   4889999999999 789


Q ss_pred             EEEEeccCCCEEEEEcCCCcceeeecc---ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996           94 YIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus        94 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                      +|++++.||.|++||+.+ ..+..+..   |...|.+++|+|++++|++|+.||.|++||++            ...+..
T Consensus       133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~------------~~~~~~  199 (383)
T 3ei3_B          133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD------------GHEIFK  199 (383)
T ss_dssp             EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT------------SCEEEE
T ss_pred             EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC------------CCEEEE
Confidence            999999999999999985 55555543   44889999999999999999999999999983            235667


Q ss_pred             ccCCcCceeEEEEeecCCee-EEEEeeCCCcEEEEEcCC----CceeeeeecccceeEEEECC-CCCEEEEEeCCCcEEE
Q 012996          171 FTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLK----GRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYI  244 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i  244 (451)
                      +.+|...|.+++|++++  . ++++++.|+.|++||+++    +..+..+.+...|.+++|+| ++.+|++++.|+.|++
T Consensus       200 ~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          200 EKLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             EECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             eccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence            78899999999999988  5 999999999999999998    66777778999999999999 9999999999999999


Q ss_pred             EEccCCCCCCCCCCceeeeeeccCC----------cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec--CCC
Q 012996          245 AALNAESPSTSSYGMHIIGSLSDHS----------KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--AKG  311 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~  311 (451)
                      ||+++.........  .......|.          ..+..++|+| +.+  +|+.||.|++||+.+++++..+..  |.+
T Consensus       278 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~  353 (383)
T 3ei3_B          278 YSSYDWSKPDQIII--HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAG  353 (383)
T ss_dssp             EETTBTTSCSEEEE--CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCS
T ss_pred             EECCCCcccccccc--ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCc
Confidence            99988653211000  000111122          3444566666 555  778999999999999999999987  457


Q ss_pred             CeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       312 ~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .+..++|+|++++|++++ ||.|++|++.+
T Consensus       354 ~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          354 IISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            788889999999999997 99999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.5e-41  Score=335.58  Aligned_cols=285  Identities=19%  Similarity=0.309  Sum_probs=240.8

Q ss_pred             CCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996           34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  106 (451)
                      +|...|.+++  |+|++ .+|++++.| ++|++|++.+...      .....|...|.+++|+|++++|++|+.||.|+|
T Consensus       380 ~H~~~V~~v~--~~~~~~~~l~s~s~D-~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          380 AHTDMVTAIA--TPIDNADIIVSASRD-KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             CCSSCEEEEE--CCTTCCSEEEEEETT-SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCceeEEEE--ecCCCCCEEEEEeCC-CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            4668899998  99875 678888887 9999999875431      234568899999999999999999999999999


Q ss_pred             EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      ||+.++..+..+.+|...|.+++|+|++++|++|+.|++|++||+...        ..........+|...|.+++|+++
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE--------CKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------EEEEECSSTTSCSSCEEEEEECSC
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC--------cceeeccCCCCCCCcEEEEEEeCC
Confidence            999999999999999999999999999999999999999999998431        111112234579999999999998


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      +....+++++.|++|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||+.+.         ..+..+
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---------~~~~~~  599 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---------KKLYSL  599 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---------EEEECC
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------ceEEEe
Confidence            755689999999999999999998888776 8889999999999999999999999999999886         334444


Q ss_pred             ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-------------------CeeEEEEEecCcee
Q 012996          266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-------------------PVNNILVVRRPLYL  325 (451)
Q Consensus       266 ~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------~v~~l~~s~~~~~l  325 (451)
                      . +...|.+++|+| +.+|+++ .|+.|++||+.++..+..+..+..                   .+++++|+|+|++|
T Consensus       600 ~-~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          600 E-ANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             B-CSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             c-CCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence            4 456899999999 6666555 566799999999998887754321                   37899999999999


Q ss_pred             eeccCCCCccccccC
Q 012996          326 NLGSFSNPHTSSRRH  340 (451)
Q Consensus       326 ~~~s~d~~i~iw~~~  340 (451)
                      ++|+.||.|++|++.
T Consensus       678 ~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEcCCCeEEEEecc
Confidence            999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-41  Score=343.55  Aligned_cols=328  Identities=12%  Similarity=0.079  Sum_probs=243.9

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--------
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--------   75 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--------   75 (451)
                      +|++++ .|++|+|||+.+++.+..+.    +...|.+++  |+|+++++++++.| |.|++||+.+.....        
T Consensus        71 ~L~S~s-~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~--~sp~g~~l~sgs~d-g~V~lwd~~~~~~~~~~i~~~~~  142 (902)
T 2oaj_A           71 YLVVIN-AKDTVYVLSLYSQKVLTTVF----VPGKITSID--TDASLDWMLIGLQN-GSMIVYDIDRDQLSSFKLDNLQK  142 (902)
T ss_dssp             EEEEEE-TTCEEEEEETTTCSEEEEEE----CSSCEEEEE--CCTTCSEEEEEETT-SCEEEEETTTTEEEEEEECCHHH
T ss_pred             EEEEEE-CcCeEEEEECCCCcEEEEEc----CCCCEEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCccccceeccccc
Confidence            589999 99999999999999988885    346789999  99999999999998 999999998876531        


Q ss_pred             ----eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccc------------------cCCeeEEEEcc
Q 012996           76 ----KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAH------------------YRAVTCLVFSE  132 (451)
Q Consensus        76 ----~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~  132 (451)
                          ...|.++|.+++|+|+ +..+++|+.||.| +||+++++.+..+..|                  ...|.+++|+|
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence                1347789999999996 5789999999999 9999999888877655                  57899999999


Q ss_pred             CCcEEEEeeCCCcEEEeeCcchhhhhhhhcc---cccce----ecccCCcCceeEEEEeecC------------------
Q 012996          133 DGSFLISGSEDGCVRIWSLLTVFEECESQRA---SHLYL----HSFTGHTLRITDIVIGYGG------------------  187 (451)
Q Consensus       133 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~----~~~~~~~~~i~~i~~~~~~------------------  187 (451)
                      +|++|++|+.||.|++||++++.........   .....    ..-..|...|.+++|++..                  
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~  301 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD  301 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence            9999999999999999999764221100000   00000    0000112233344333210                  


Q ss_pred             -------------------------------------------------------------CeeEEEEeeCCCcEEEEEc
Q 012996          188 -------------------------------------------------------------VSATIVSASEDRTCKVWSL  206 (451)
Q Consensus       188 -------------------------------------------------------------~~~~l~s~~~d~~i~iwd~  206 (451)
                                                                                   +...+++++.||.|++||+
T Consensus       302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~  381 (902)
T 2oaj_A          302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY  381 (902)
T ss_dssp             CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred             CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence                                                                         0124555666777788877


Q ss_pred             CCCceeee-------ee-cccc----------------------------------eeEEEECCCCCEEEEEeCCCcEEE
Q 012996          207 LKGRLLRN-------IV-FPSV----------------------------------IDAIALDPAEHVFYAGSRDGSIYI  244 (451)
Q Consensus       207 ~~~~~~~~-------~~-~~~~----------------------------------i~~~~~~~~~~~l~~~~~dg~i~i  244 (451)
                      .++.....       +. +...                                  +.+++|+|++++|++|+.|++|++
T Consensus       382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl  461 (902)
T 2oaj_A          382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI  461 (902)
T ss_dssp             TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred             CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence            66543221       00 1122                                  334556789999999999999999


Q ss_pred             EEccCCCCCCCCCCceeeeee-----ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC------------------
Q 012996          245 AALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH------------------  300 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~------------------  300 (451)
                      ||+..+..... .  .....+     .+|...|++++|+| +++||+|+.||+|+|||+.++                  
T Consensus       462 Wd~~~g~~~~~-~--~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~  538 (902)
T 2oaj_A          462 YDASHGDIQDN-A--SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF  538 (902)
T ss_dssp             EESSCCTTTTT-B--CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred             EECCCccccCC-c--eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence            99988642110 0  000011     27999999999999 999999999999999998765                  


Q ss_pred             ---------------------------ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          301 ---------------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       301 ---------------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                                                 +++..+.+|.++|++++||||| +||+|+.|++|++||+.+..+
T Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence                                       2477888999999999999999 999999999999999887543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-40  Score=326.02  Aligned_cols=316  Identities=15%  Similarity=0.115  Sum_probs=258.6

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeec-cCcccCCCCCCccEEEEECCCCceeeee-----
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEVKS-----   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~~~~~~~~-----   77 (451)
                      +|++++ .||.|++||+.+++.+..+..|......+.+++  |+|+ ++++++++.+ |.|++||+.+++.....     
T Consensus       175 ~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~  250 (615)
T 1pgu_A          175 RSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE--FSPDSGEFVITVGSD-RKISCFDGKSGEFLKYIEDDQE  250 (615)
T ss_dssp             EEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE--ECSTTCCEEEEEETT-CCEEEEETTTCCEEEECCBTTB
T ss_pred             EEEEEe-CCCcEEEEeCCCcceeeeecccCCCCceEEEEE--ECCCCCCEEEEEeCC-CeEEEEECCCCCEeEEeccccc
Confidence            688999 999999999999999988876654333789999  9999 9999999988 99999999988877665     


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc----cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH----YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..+    ...+.++.|. ++.++++++.||.|++||+.+
T Consensus       251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence            788999999999 9999999999999999999999998888766    4678888886 888999999999999999865


Q ss_pred             hhhhhhhhccccc------------------------ceecccCC-----------------------------------
Q 012996          154 VFEECESQRASHL------------------------YLHSFTGH-----------------------------------  174 (451)
Q Consensus       154 ~~~~~~~~~~~~~------------------------~~~~~~~~-----------------------------------  174 (451)
                      .............                        .+.  ..|                                   
T Consensus       329 ~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  406 (615)
T 1pgu_A          329 DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH--QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG  406 (615)
T ss_dssp             EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE--CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred             CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc--CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence            3211000000000                        000  122                                   


Q ss_pred             ---------------------------------------cCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCCCcee-e
Q 012996          175 ---------------------------------------TLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLL-R  213 (451)
Q Consensus       175 ---------------------------------------~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~-~  213 (451)
                                                             ...+.+++++  +  .++++++. |+.|++||+.+++.. .
T Consensus       407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~d~~i~~~~~~~~~~~~~  482 (615)
T 1pgu_A          407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--Q--NYVAVGLEEGNTIQVFKLSDLEVSFD  482 (615)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--S--SEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--C--CEEEEeecCCCeEEEEECCCcccccc
Confidence                                                   3334444444  2  56777777 888888888776554 2


Q ss_pred             eee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-----------C
Q 012996          214 NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-----------G  280 (451)
Q Consensus       214 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-----------~  280 (451)
                      .+. +...|.+++|+|++++|++++.||.|++||+.+.         ..+..+.+ |...|++++|+|           +
T Consensus       483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~  553 (615)
T 1pgu_A          483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEE  553 (615)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred             ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---------cceeEeecCCCCceeEEEEcCccccccccccCC
Confidence            332 7789999999999999999999999999999886         55666777 999999999998           6


Q ss_pred             CEEEEEcCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          281 DLLISGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       281 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .+|++++.||.|++||+.++ +++..+.+|.++|++++|+|+++ |++++.||.+++|++..
T Consensus       554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            79999999999999999998 78999999999999999999999 99999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-42  Score=328.53  Aligned_cols=306  Identities=11%  Similarity=0.041  Sum_probs=226.5

Q ss_pred             EEeecCCCCCCeEEEECccCceee----eeecCCCCCCceEEecceEeec------cCcccCCCCCCccEEEEECCCCce
Q 012996            4 LIASSSVADTGIGCWDLESGAEQL----RYKSCASPPHGLACVGQRFLAS------SQLREQPSASSGSILYWSWSKPQV   73 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~------~~~l~~~~~d~g~i~vw~~~~~~~   73 (451)
                      +||+++ .|++|+|||+.+++...    .+..   +...|..++  |+|+      +.+||+++.| |+|++||+..+..
T Consensus       175 ~laS~s-~D~tI~iWd~~~~~~~~~~~~~l~~---~~~~V~~v~--wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~  247 (524)
T 2j04_B          175 MFDKEK-HSSCIQIFKMNTSTLHCVKVQTIVH---SFGEVWDLK--WHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNAT  247 (524)
T ss_dssp             --------CEEEEEEEEETTTCCEEEEEEEEE---CCCSEEEEE--ECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSS
T ss_pred             hhccCC-CCceEEEEEccCCCCCceEEEEEEe---cCCcEEEEE--ECCCCCCCCCCceEEEEecC-CeEEEEEcCCCcc
Confidence            467788 99999999998877532    2333   345688888  9986      5789999888 9999999976532


Q ss_pred             e------------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeeccccCCeeEE--EEccCC-cEE
Q 012996           74 E------------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYRAVTCL--VFSEDG-SFL  137 (451)
Q Consensus        74 ~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l  137 (451)
                      .            ....|...|.+++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++  .|+|++ .+|
T Consensus       248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~l  326 (524)
T 2j04_B          248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVV  326 (524)
T ss_dssp             SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred             ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEE
Confidence            1            234577899999999864 89999999999999998774 455688999999999  567887 899


Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc--CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  215 (451)
                      +||+.|++|++||+++..           ....+.+|.  ..|.+++|+|++  ..+++++.|++|++||++++..+..+
T Consensus       327 aS~S~D~tvklWD~~~~~-----------~~~~~~~~~~~~~v~~v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~~~l  393 (524)
T 2j04_B          327 STVAVDGYFYIFNPKDIA-----------TTKTTVSRFRGSNLVPVVYCPQI--YSYIYSDGASSLRAVPSRAAFAVHPL  393 (524)
T ss_dssp             EEEETTSEEEEECGGGHH-----------HHCEEEEECSCCSCCCEEEETTT--TEEEEECSSSEEEEEETTCTTCCEEE
T ss_pred             EEeccCCeEEEEECCCCC-----------cccccccccccCcccceEeCCCc--CeEEEeCCCCcEEEEECcccccceee
Confidence            999999999999996532           223344454  357899999987  68999999999999999998876666


Q ss_pred             e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-----cCCcceeEEEEec-CCEEEEEcC
Q 012996          216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-----DHSKAVTCLAYST-GDLLISGSE  288 (451)
Q Consensus       216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~l~s~~~  288 (451)
                      . |...|.+++|+|++.+|++|+.||.|++||+....          +....     .+...|.+++|+| +..+ ....
T Consensus       394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~----------~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~  462 (524)
T 2j04_B          394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL----------LHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS  462 (524)
T ss_dssp             EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST----------TTCC------CCCCEEEECBCCSSSCEE-EECC
T ss_pred             ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh----------ccccccCccceeeeEEEEeccCCCCCeE-EccC
Confidence            5 88999999999999999999999999999986532          11111     1223578999999 7644 3322


Q ss_pred             CCcEEEEeCC-CCceEEEeecCCCCeeEEEEEecCc---eeeeccCCCCccccccCCCC
Q 012996          289 DGMVRVWDPI-THNIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       289 dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~s~~~~---~l~~~s~d~~i~iw~~~~~~  343 (451)
                        .+.+|+.. ++.++.++.+|.++|.+++|+|++.   .+|+|+.||.|+||++.+..
T Consensus       463 --~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~  519 (524)
T 2j04_B          463 --SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH  519 (524)
T ss_dssp             --CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred             --CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence              23445443 5778889999999999999999964   99999999999999988653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-41  Score=316.68  Aligned_cols=280  Identities=20%  Similarity=0.208  Sum_probs=238.0

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  118 (451)
                      +..++  |+|+++++++++.| |.|++||+.+............+....|+|++++|++|+.||.|++||+.+++....+
T Consensus        59 ~~~~~--~s~~g~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           59 GKGNT--FEKVGSHLYKARLD-GHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             CTTCE--EEEEETTEEEEEET-TEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             cccee--eeecCCeEEEEEcC-CcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence            33455  99999999999998 9999999987665433333344555578999999999999999999999999998888


Q ss_pred             ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (451)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d  198 (451)
                      .+|.+.|.+++|+|++++|++|+.||.|++||+.+           ...+..+.+|...|.+++|+|++  .+|++++.|
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d  202 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-----------GSNPRTLIGHRATVTDIAIIDRG--RNVLSASLD  202 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCCCEEEECCSSCEEEEEEETTT--TEEEEEETT
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-----------CcCceEEcCCCCcEEEEEEcCCC--CEEEEEcCC
Confidence            99999999999999999999999999999999954           34566778999999999999988  899999999


Q ss_pred             CcEEEEEcCCCceeeeee----cc---------------------cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996          199 RTCKVWSLLKGRLLRNIV----FP---------------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~----~~---------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (451)
                      +.|++||+++++.+..+.    +.                     ..+.+++|+|++++|++|+.||.|++||+++..  
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--  280 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--  280 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--
T ss_pred             CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--
Confidence            999999999998888775    22                     344555668999999999999999999998864  


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCCce-EEEeec-CCCCeeEEEEEecCceeeecc
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNI-VRMFRL-AKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~s  329 (451)
                            ........|...|++++|+| +. +|++|+.||.|++||+.+++. +..+.. |..+|+++ +++++.+|++++
T Consensus       281 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~  353 (420)
T 3vl1_A          281 ------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSG  353 (420)
T ss_dssp             ------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEET
T ss_pred             ------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEec
Confidence                  33444456889999999999 77 999999999999999998754 777776 56677777 556889999999


Q ss_pred             CCCCccccccCCCC
Q 012996          330 FSNPHTSSRRHGSQ  343 (451)
Q Consensus       330 ~d~~i~iw~~~~~~  343 (451)
                      .||.+++|++....
T Consensus       354 ~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          354 FDTSIKLDIISDPE  367 (420)
T ss_dssp             TTEEEEEEEECCTT
T ss_pred             CCccEEEEeccCCC
Confidence            99999999988643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.1e-41  Score=356.45  Aligned_cols=326  Identities=19%  Similarity=0.225  Sum_probs=282.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-------
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-------   75 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-------   75 (451)
                      .++++|+ .||.|++||+.+++.+..+.+   |...|.+++  |+|+++++++++.| |.|++||+.++....       
T Consensus       714 ~~l~sg~-~d~~v~vwd~~~~~~~~~~~~---h~~~v~~~~--~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~  786 (1249)
T 3sfz_A          714 LLLATGS-NDFFLKLWDLNQKECRNTMFG---HTNSVNHCR--FSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRF  786 (1249)
T ss_dssp             CEEEEEE-TTSCEEEEETTSSSEEEEECC---CSSCEEEEE--ECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCC
T ss_pred             eEEEEEe-CCCeEEEEECCCcchhheecC---CCCCEEEEE--EecCCCEEEEEECC-CeEEEEeCCCCcccceeccccc
Confidence            4688999 999999999999999888775   556788888  99999999999998 999999986543211       


Q ss_pred             -------------------------------------------------eecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996           76 -------------------------------------------------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (451)
Q Consensus        76 -------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  106 (451)
                                                                       ...|...|.+++|+|+++++++|+.||.|++
T Consensus       787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v  866 (1249)
T 3sfz_A          787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL  866 (1249)
T ss_dssp             C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred             ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence                                                             1145678999999999999999999999999


Q ss_pred             EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh---------------------------
Q 012996          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE---------------------------  159 (451)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------  159 (451)
                      ||+.++..+..+.+|.+.|.+++|+|++++|++++.||.|++|++.+......                           
T Consensus       867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            99999999999999999999999999999999999999999999754211000                           


Q ss_pred             -----------------------------------------hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996          160 -----------------------------------------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (451)
Q Consensus       160 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d  198 (451)
                                                               ...........+.+|...|.+++|++++  .++++++.|
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~d 1024 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG--KTLISSSED 1024 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS--SCEEEECSS
T ss_pred             EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC--CEEEEEcCC
Confidence                                                     0001123345567899999999999998  899999999


Q ss_pred             CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996          199 RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                      |.|++||+.+++......+...+.+++|+|++ .+++++.||.|++||+.++         .....+.+|...|++++|+
T Consensus      1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A         1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITG---------RIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp             SBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTT---------CCCEEEECCSSCCCCEEEC
T ss_pred             CEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCC---------ceeEEEcccCCcEEEEEEC
Confidence            99999999999888777799999999999965 5788999999999999886         4466788899999999999


Q ss_pred             c-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCc
Q 012996          279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       279 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~  347 (451)
                      | +.+|++++.||+|++||+.+++++..+.+|.++|++++|+|+|++|++++.||.|++|++.++.+...
T Consensus      1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A         1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp             SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence            9 99999999999999999999999999999999999999999999999999999999999987765543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.3e-40  Score=299.44  Aligned_cols=275  Identities=18%  Similarity=0.275  Sum_probs=222.4

Q ss_pred             EEEeecCCCCCCeEEEECccCc-------eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee
Q 012996            3 LLIASSSVADTGIGCWDLESGA-------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV   75 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~   75 (451)
                      .+||+|+ .|++|++||+.+++       ....+.   +|...|.+++  |+|++.++++++.| ++|++||+.++....
T Consensus        40 ~~l~sgs-~D~~v~iWd~~~~~~~~~~~~~~~~l~---~h~~~V~~~~--~~~~~~~l~s~s~D-~~v~lwd~~~~~~~~  112 (343)
T 2xzm_R           40 PVLISGS-RDKTVMIWKLYEEEQNGYFGIPHKALT---GHNHFVSDLA--LSQENCFAISSSWD-KTLRLWDLRTGTTYK  112 (343)
T ss_dssp             CEEEEEE-TTSCEEEEEECSSCCSSBSEEEEEEEC---CCSSCEEEEE--ECSSTTEEEEEETT-SEEEEEETTSSCEEE
T ss_pred             CEEEEEc-CCCEEEEEECCcCCcccccccccchhc---cCCCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCcEEE
Confidence            3789999 99999999987543       333444   5667899999  99999999999998 999999999877654


Q ss_pred             e-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCC----------cEEEEee
Q 012996           76 K-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDG----------SFLISGS  141 (451)
Q Consensus        76 ~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~----------~~l~s~~  141 (451)
                      . ..|...|.+++|+|++++|++|+.|+.|++||+... .....   ..|...|.+++|+|++          .+|++++
T Consensus       113 ~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence            3 468899999999999999999999999999998743 33333   3788999999999986          7899999


Q ss_pred             CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeeecccc
Q 012996          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSV  220 (451)
Q Consensus       142 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~  220 (451)
                      .||.|++||..            ......+.+|...|.+++|+|++  .+|++++.||.|++||+. .......+.+...
T Consensus       192 ~d~~i~iwd~~------------~~~~~~~~~h~~~v~~~~~s~~g--~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~  257 (343)
T 2xzm_R          192 WDGRLKVWNTN------------FQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWDILNLTYPQREFDAGST  257 (343)
T ss_dssp             TTSEEEEEETT------------TEEEEEEECCSSCEEEEEECTTS--SEEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred             CCCEEEEEcCC------------CceeEEEcCccccceEEEECCCC--CEEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence            99999999952            23455678899999999999998  899999999999999994 4445555556778


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC--CCC--CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPST--SSY--GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw  295 (451)
                      |.+++|+|++.+++++ .|+.|++||+.+.....  ...  .........+|...|++++|+| +.+|++|+.||.|++|
T Consensus       258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred             EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence            9999999999887755 57889999998764321  000  0000111237888999999999 9999999999999999


Q ss_pred             eCCCC
Q 012996          296 DPITH  300 (451)
Q Consensus       296 d~~~~  300 (451)
                      ++.++
T Consensus       337 ~~~~g  341 (343)
T 2xzm_R          337 SFETS  341 (343)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            98654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-40  Score=310.66  Aligned_cols=301  Identities=13%  Similarity=0.189  Sum_probs=247.6

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEEC----CCCc------eeeee-c-
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW----SKPQ------VEVKS-L-   78 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~----~~~~------~~~~~-~-   78 (451)
                      ...+.+||+...........   |...|.+++  |+|+++ ++++++.| |.|++|++    .++.      ..... . 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   97 (425)
T 1r5m_A           24 NSIDSSDDLDGFVKILKEIV---KLDNIVSST--WNPLDESILAYGEKN-SVARLARIVETDQEGKKYWKLTIIAELRHP   97 (425)
T ss_dssp             ----------CCCEECEEEE---ECSCCSEEE--ECSSCTTEEEEEETB-TEEEEEEEEEC------CEEEEEEEEEECC
T ss_pred             ccccccccchhhhhheeeee---ccCceEEEE--ECCCCCcEEEEecCC-ceEEEEEEecccCCcccccccccccccccc
Confidence            34567888765544433332   446677888  999999 99999888 99999999    7766      22221 2 


Q ss_pred             ---------CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           79 ---------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        79 ---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                               |...|.+++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++|
T Consensus        98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (425)
T 1r5m_A           98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW  176 (425)
T ss_dssp             CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence                     456999999999999999999999999999 6788888999999999999999999999999999999999


Q ss_pred             eCcchhhhhhhhcccccceecccCCcCc---------------eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHTLR---------------ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  214 (451)
                      |+.+           ...+..+..+...               +.+++|++++   .+++++.+|.|++||+.+++.+..
T Consensus       177 d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~  242 (425)
T 1r5m_A          177 NVIS-----------GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGK  242 (425)
T ss_dssp             ETTT-----------TEEEEEECCC---------------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEE
T ss_pred             ECCC-----------CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeee
Confidence            9955           3344445555554               8999999875   689999999999999999988877


Q ss_pred             ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcE
Q 012996          215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV  292 (451)
Q Consensus       215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i  292 (451)
                      +. +...|.+++|+|++++|++++.||.|++||+...         ..+..+.+|...|.+++|+| + ++++++.||.|
T Consensus       243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i  312 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSV  312 (425)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC-EEEEEeCCCcE
Confidence            76 7889999999999999999999999999999875         34566778999999999999 7 99999999999


Q ss_pred             EEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      ++||+.+++.+..+..|..+|.+++|+|++++|++++.||.+++|++....
T Consensus       313 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          313 RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            999999999999999999999999999999999999999999999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-40  Score=294.86  Aligned_cols=284  Identities=18%  Similarity=0.259  Sum_probs=245.9

Q ss_pred             ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCC
Q 012996           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSG  102 (451)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg  102 (451)
                      +....+.+   |...|.+++  | |+++++++++.| |.|++||+.+..... ...|...|.+++|+|++++|++|+.||
T Consensus         9 ~~~~~l~~---h~~~v~~~~--~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A            9 QLSATLKG---HDQDVRDVV--A-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             EEEEEECC---CSSCEEEEE--E-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             HHHHHhhC---CCCCcEEEE--e-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence            45555554   567888888  9 999999999998 999999998776543 345789999999999999999999999


Q ss_pred             CEEEEEcCCC---cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996          103 DIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT  179 (451)
Q Consensus       103 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  179 (451)
                      .|++|++...   +.+..+.+|...|.++.|  ++++|++++.||.|++||.             ......+..|...+.
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-------------~~~~~~~~~~~~~v~  146 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-------------GSLVYNLQAHNASVW  146 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET-------------TEEEEEEECCSSCEE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC-------------CcEEEecccCCCcee
Confidence            9999998765   557778899999999999  4779999999999999994             224566778999999


Q ss_pred             EEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996          180 DIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (451)
Q Consensus       180 ~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (451)
                      ++++.+ ++  ..+++++.||.|++||.  .+....+.  +...+.+++|+|++. +++++.||.|++||+++.      
T Consensus       147 ~~~~~~~~~--~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~------  215 (313)
T 3odt_A          147 DAKVVSFSE--NKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG------  215 (313)
T ss_dssp             EEEEEETTT--TEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC------
T ss_pred             EEEEccCCC--CEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch------
Confidence            999998 55  79999999999999994  44444444  788999999999998 999999999999999876      


Q ss_pred             CCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                         ..+..+.+|...|++++|+| + .|++++.||.|++||+.+++++..+..|..+|++++|+|+++ +++++.||.++
T Consensus       216 ---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~  290 (313)
T 3odt_A          216 ---DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR  290 (313)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred             ---hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence               45777889999999999999 6 799999999999999999999999999999999999999998 66789999999


Q ss_pred             ccccCCCCCC
Q 012996          336 SSRRHGSQLP  345 (451)
Q Consensus       336 iw~~~~~~~~  345 (451)
                      +|++......
T Consensus       291 iw~~~~~~~~  300 (313)
T 3odt_A          291 IFSQEKSRWA  300 (313)
T ss_dssp             EEESCGGGCC
T ss_pred             EEeCCCCcee
Confidence            9998876543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-40  Score=349.82  Aligned_cols=333  Identities=17%  Similarity=0.178  Sum_probs=278.6

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+||+|+ .||+|++||+.+++.+..+.+   |...|.+++  |+|+++++++++.| |.|++||+.++..... ..|..
T Consensus       628 ~~l~s~~-~d~~i~vw~~~~~~~~~~~~~---h~~~v~~~~--~s~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~  700 (1249)
T 3sfz_A          628 QRIASCG-ADKTLQVFKAETGEKLLDIKA---HEDEVLCCA--FSSDDSYIATCSAD-KKVKIWDSATGKLVHTYDEHSE  700 (1249)
T ss_dssp             SEEEEEE-TTSCEEEEETTTCCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCCEEEEecc---CCCCEEEEE--EecCCCEEEEEeCC-CeEEEEECCCCceEEEEcCCCC
Confidence            3689999 999999999999999988875   557788999  99999999999988 9999999998876544 46889


Q ss_pred             CeeEEEECC--CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           82 PIKPIAANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      .|.+++|+|  ++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+......
T Consensus       701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~  780 (1249)
T 3sfz_A          701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS  780 (1249)
T ss_dssp             CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred             cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence            999999999  566899999999999999999999999999999999999999999999999999999999976432110


Q ss_pred             hhc-------------------------------------------cccccee-cccCCcCceeEEEEeecCCeeEEEEe
Q 012996          160 SQR-------------------------------------------ASHLYLH-SFTGHTLRITDIVIGYGGVSATIVSA  195 (451)
Q Consensus       160 ~~~-------------------------------------------~~~~~~~-~~~~~~~~i~~i~~~~~~~~~~l~s~  195 (451)
                      ...                                           ....... ...+|...|.+++|++++  .+++++
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~  858 (1249)
T 3sfz_A          781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD--HLAVIA  858 (1249)
T ss_dssp             EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST--TEEEEE
T ss_pred             ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC--CEEEEE
Confidence            000                                           0000111 123788999999999998  899999


Q ss_pred             eCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCc---------------
Q 012996          196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM---------------  259 (451)
Q Consensus       196 ~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------  259 (451)
                      +.||.|++||+.++..+..+. |...|.+++|+|++.+|++++.||.|++|++............               
T Consensus       859 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  938 (1249)
T 3sfz_A          859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL  938 (1249)
T ss_dssp             CSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred             eCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence            999999999999998888877 8889999999999999999999999999998642111000000               


Q ss_pred             --------e-----eeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee
Q 012996          260 --------H-----IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL  325 (451)
Q Consensus       260 --------~-----~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  325 (451)
                              .     .......+...+.+++|+| +.++++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++++|
T Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A          939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp             EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred             EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence                    0     0001112356799999999 9999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCccccccCCCCC
Q 012996          326 NLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       326 ~~~s~d~~i~iw~~~~~~~  344 (451)
                      ++++.||.+++|+..++..
T Consensus      1019 ~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A         1019 ISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             EEECSSSBEEEEETTTTEE
T ss_pred             EEEcCCCEEEEEECCCCce
Confidence            9999999999999886543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.4e-40  Score=292.31  Aligned_cols=251  Identities=18%  Similarity=0.176  Sum_probs=211.7

Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--CcceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeC
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~  151 (451)
                      ...|.+.|.+++|+|+|++||+|+.|+.|+|||+..  .+.+.++.+|.++|.+++|++  ++++|++|+.||+|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            346889999999999999999999999999999974  467889999999999999986  4899999999999999999


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce--eeee-ecccceeEEEECC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL--LRNI-VFPSVIDAIALDP  228 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~-~~~~~i~~~~~~~  228 (451)
                      .+         .....+..+.+|...|.+++|+|+..+.+|++++.|+.|++||++++..  ...+ .|...|.+++|+|
T Consensus        85 ~~---------~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           85 EN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (297)
T ss_dssp             SS---------SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred             CC---------CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence            65         2223455677899999999999973338999999999999999987642  2223 3788999999999


Q ss_pred             C-------------CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C---CEEEEEcCCCc
Q 012996          229 A-------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G---DLLISGSEDGM  291 (451)
Q Consensus       229 ~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~---~~l~s~~~dg~  291 (451)
                      +             +++|++|+.|+.|++||++.....     ......+.+|...|.+++|+| +   .+|++++.|++
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence            7             579999999999999999875311     124567889999999999999 5   79999999999


Q ss_pred             EEEEeCCCCc---eEEEe--ecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          292 VRVWDPITHN---IVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       292 i~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |++||+.+..   ....+  ..|...|.+++|+|++++||+++.||.+++|+..
T Consensus       231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999987743   12233  4678899999999999999999999999999965

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.9e-41  Score=308.60  Aligned_cols=289  Identities=17%  Similarity=0.193  Sum_probs=243.2

Q ss_pred             CCCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceeeee------cCCCCeeEEEECCC----CcEEEEec
Q 012996           34 SPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAANSH----GTYIAGGG   99 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~~~------~~~~~v~~~~~~~~----~~~l~~~~   99 (451)
                      +|...|.+++  |+|+    ...+++++.+ +.|++|++.++......      .|...|.+++|+|+    +.+|++|+
T Consensus        16 ~h~~~v~~i~--~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           16 DHNQPLFGVQ--FNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             TTCSCEEEEE--ECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCCceEEEE--EecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            5778899999  9984    4455566666 79999999866543221      15688999999998    77999999


Q ss_pred             cCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc---cCCc
Q 012996          100 QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---TGHT  175 (451)
Q Consensus       100 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~  175 (451)
                      .||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++           ......+   ..|.
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~  161 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-----------DTLVAIFGGVEGHR  161 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-----------TEEEEEECSTTSCS
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-----------CeEEEEeccccccc
Confidence            999999999999999999999999999999999 999999999999999999955           2334444   6899


Q ss_pred             CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------------------------cccceeEEEE
Q 012996          176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIAL  226 (451)
Q Consensus       176 ~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~~  226 (451)
                      ..|.+++|++++  .+|++++.||.|++||+++++....+.                             +...|.+++|
T Consensus       162 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (366)
T 3k26_A          162 DEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW  239 (366)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred             CceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence            999999999988  899999999999999999876554332                             7788999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCCCCCC-----CCCceeeeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEEeCC
Q 012996          227 DPAEHVFYAGSRDGSIYIAALNAESPSTS-----SYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iwd~~  298 (451)
                      +  ++++++++.||.|++||+........     ......+..+..|...|++++|+|   +.+|++|+.||.|++||+.
T Consensus       240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred             c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence            8  77999999999999999987653111     112245777888999999999998   5899999999999999999


Q ss_pred             CCce----EEEeecC--CCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          299 THNI----VRMFRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       299 ~~~~----~~~~~~~--~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ++++    ...+..|  ..+|++++|+|++++|++++.||.|++|++.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            8764    4477777  7899999999999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.6e-40  Score=303.91  Aligned_cols=285  Identities=12%  Similarity=0.132  Sum_probs=240.9

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      |...|.+++  |+|+++++++++.+ +.|++||+.++.   ......|...|.+++|+|++++|++++.||.|++||+.+
T Consensus         7 ~~~~i~~~~--~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            7 LVEPISCHA--WNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             CSSCCCEEE--ECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             cCCCeEEEE--ECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            556788888  99999999999888 999999998874   334456889999999999999999999999999999988


Q ss_pred             Ccceee--eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          112 GRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       112 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                      ++....  +..|...|.+++|+|++++|++++.||.|++||+.....       ..........|...|.+++|++++  
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~--  154 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-------WWVCKHIKKPIRSTVLSLDWHPNS--  154 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-------EEEEEEECTTCCSCEEEEEECTTS--
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-------ceeeeeeecccCCCeeEEEEcCCC--
Confidence            875444  367999999999999999999999999999999965210       001223346789999999999988  


Q ss_pred             eEEEEeeCCCcEEEEEcC------------------CCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          190 ATIVSASEDRTCKVWSLL------------------KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      .++++++.||.|++||++                  .++.+..+. +...+.+++|+|++.+|++++.||.|++||+++.
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            899999999999999954                  567777775 7889999999999999999999999999999886


Q ss_pred             CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC--Cce-------------------------
Q 012996          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--HNI-------------------------  302 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~--~~~-------------------------  302 (451)
                               ..+..+..|..+|.+++|+| +.+|++| .||.|++|++.+  +..                         
T Consensus       235 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          235 ---------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             ---------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             ---------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence                     45677888999999999999 7777776 899999999987  421                         


Q ss_pred             -------E------EEe-ecCCCCeeEEEEE-ecC---ceeeeccCCCCccccccCC
Q 012996          303 -------V------RMF-RLAKGPVNNILVV-RRP---LYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       303 -------~------~~~-~~~~~~v~~l~~s-~~~---~~l~~~s~d~~i~iw~~~~  341 (451)
                             .      ..+ .+|.++|++++|+ ++|   .+|++++.||.|++|++..
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence                   0      223 4899999999977 566   9999999999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-39  Score=308.25  Aligned_cols=299  Identities=17%  Similarity=0.250  Sum_probs=254.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~   81 (451)
                      .+|++|+ .||+|++||+.+++.+..+.+   |...|.++.  |+|++ .+++++.| |+|++||+.++...... .|..
T Consensus       133 ~~l~sgs-~dg~i~vwd~~~~~~~~~~~~---h~~~V~~l~--~~~~~-~l~s~s~d-g~i~vwd~~~~~~~~~~~~h~~  204 (464)
T 3v7d_B          133 NYVITGA-DDKMIRVYDSINKKFLLQLSG---HDGGVWALK--YAHGG-ILVSGSTD-RTVRVWDIKKGCCTHVFEGHNS  204 (464)
T ss_dssp             TEEEEEE-TTSCEEEEETTTTEEEEEECC---CSSCEEEEE--ECSTT-EEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEc-CCCcEEEEECCCCcEEEEEeC---CCcCEEEEE--EcCCC-EEEEEeCC-CCEEEEECCCCcEEEEECCCCC
Confidence            3689999 999999999999999988875   557788888  99888 88888888 99999999988766444 4889


Q ss_pred             CeeEEEEC--CCCcEEEEeccCCCEEEEEcCCCcc-----------------------eeeeccccCCeeEEEEccCCcE
Q 012996           82 PIKPIAAN--SHGTYIAGGGQSGDIYMWEVASGRL-----------------------LKKWHAHYRAVTCLVFSEDGSF  136 (451)
Q Consensus        82 ~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~  136 (451)
                      .|.+++|+  ++++++++|+.||.|++||+.++..                       +..+.+|...|.++  ++++++
T Consensus       205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~  282 (464)
T 3v7d_B          205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI  282 (464)
T ss_dssp             CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred             ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence            99999998  5789999999999999999987653                       44667888888887  567899


Q ss_pred             EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee
Q 012996          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV  216 (451)
Q Consensus       137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  216 (451)
                      +++|+.||.|++||+.+           ...+..+.+|...|.+++|++++  .++++++.||.|++||+++++.+..+.
T Consensus       283 l~~~~~d~~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          283 VVSGSYDNTLIVWDVAQ-----------MKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCC-----------CcEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            99999999999999954           45677788999999999999988  899999999999999999999998887


Q ss_pred             -cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996          217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (451)
Q Consensus       217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i  294 (451)
                       |...|.+++|+  +.+|++++.||.|++||+.+..        . .... .|...+..++|++ +.++++|+ ||.|++
T Consensus       350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--------~-~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~i  416 (464)
T 3v7d_B          350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--------R-KFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNI  416 (464)
T ss_dssp             CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--------E-EEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred             CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--------e-eeee-cCCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence             88899999997  5899999999999999998753        1 2222 3667888899999 89999988 999999


Q ss_pred             EeCCCCceEEE-eecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          295 WDPITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       295 wd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ||+.+++++.. +..|.++|.+++|+ ...++++++.||.+.+|-
T Consensus       417 wd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          417 YNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            99999999986 66788999999997 445556666777666554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-40  Score=311.27  Aligned_cols=285  Identities=13%  Similarity=0.110  Sum_probs=224.1

Q ss_pred             CCCCceEEecceEeec-cCcccCCCCCCccEEEEECCCCceee---eecCCCCeeEEEECC-CCcEEEEeccCCCEEEEE
Q 012996           34 SPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  108 (451)
                      .+...|++++  |+|. +.+||+|+.| |.|+|||+.++....   ...|.+.|++|+|+| ++++|++|+.||+|++||
T Consensus       117 ~~~~~V~~l~--~~P~~~~~lasGs~d-g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          117 PFDRRATSLA--WHPTHPSTVAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             ECSSCEEEEE--ECSSCTTCEEEEETT-SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            3557799999  9995 5678888887 999999998665432   235889999999998 789999999999999999


Q ss_pred             cCCCcceeeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          109 VASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       109 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      ++++.......  .+...+.+++|+|++++|++|+.||.|++||++.            ..+..+.+|...|.+++|+|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~------------~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG------------KELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS------------CBCCCSBCCSSCEEEEEECTT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc------------ceeEEEecccceEEeeeecCC
Confidence            97665433333  3345678999999999999999999999999843            245677899999999999998


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeee----ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (451)
                      +. .++++++.|+.|++||+++.+....+    .|...|.+++|+|++.+|++++.||.|++||+.+...         .
T Consensus       262 ~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~---------~  331 (435)
T 4e54_B          262 CD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC---------P  331 (435)
T ss_dssp             CS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS---------E
T ss_pred             Cc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc---------c
Confidence            74 58899999999999999887654433    3788999999999999999999999999999987642         2


Q ss_pred             eeeccCCc------ceeEEEEec-CCEEEEEc------------CCCcEEEEeCCCCceEEEee-cCCCCeeEE-EEEec
Q 012996          263 GSLSDHSK------AVTCLAYST-GDLLISGS------------EDGMVRVWDPITHNIVRMFR-LAKGPVNNI-LVVRR  321 (451)
Q Consensus       263 ~~~~~~~~------~v~~~~~~~-~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l-~~s~~  321 (451)
                      ..+..|..      .+....|+| +.++++++            .++.|++||..+++.+..+. +|...|.++ +|+|+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd  411 (435)
T 4e54_B          332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM  411 (435)
T ss_dssp             EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred             eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence            22222221      223345666 55555543            34679999999999998865 677889887 69999


Q ss_pred             CceeeeccCCCCccccccCCCCC
Q 012996          322 PLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       322 ~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      |.+|++|+ |+.|++|+...++.
T Consensus       412 g~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          412 GDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             SSCEEEEC-SSEEEECCCC----
T ss_pred             CCEEEEEc-CCcEEEEECCcCee
Confidence            99999886 78999999886543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-41  Score=313.98  Aligned_cols=303  Identities=12%  Similarity=0.095  Sum_probs=245.0

Q ss_pred             EEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCC---Cc---eeeeecCCCCeeEEEEC
Q 012996           17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSK---PQ---VEVKSLPAEPIKPIAAN   89 (451)
Q Consensus        17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~---~~---~~~~~~~~~~v~~~~~~   89 (451)
                      .|+ .+++.+..+.  .+|...|.+++  |+| +++++++++.| |+|++||+.+   +.   ......|...|.+++|+
T Consensus        47 ~w~-~~g~~~~~~~--~~h~~~V~~~~--~s~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  120 (437)
T 3gre_A           47 MGN-LRGKLIATLM--ENEPNSITSSA--VSPGETPYLITGSDQ-GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI  120 (437)
T ss_dssp             GGG-CCCCEEEEEC--TTTTSCEEEEE--EECSSSCEEEEEETT-SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC
T ss_pred             ccc-ccceEEeeec--cCCCCceEEEE--ECCCCCCEEEEecCC-ceEEEeECcccccCcccceeeeccCCCCEEEEEEe
Confidence            587 5678877772  23668899999  999 99999999998 9999999865   32   23344588999999999


Q ss_pred             CCCcEEEEeccCCCEEEEEcC---CCcceeeecc------------ccCCeeEEE--EccCCcEEEEeeCCCcEEEeeCc
Q 012996           90 SHGTYIAGGGQSGDIYMWEVA---SGRLLKKWHA------------HYRAVTCLV--FSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                      |++++|++|+.||.|++||+.   +++.+..+..            +...+.++.  +++++.+|++|+.||.|++||++
T Consensus       121 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  200 (437)
T 3gre_A          121 PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR  200 (437)
T ss_dssp             TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred             CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999994   5554443322            456677776  55789999999999999999995


Q ss_pred             chhhhhhhhcccccceecccC--CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC
Q 012996          153 TVFEECESQRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP  228 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~  228 (451)
                      +           ...+..+..  |...|++++|++++  .+|++|+.||.|++||+++++.+..+.  +...|.+++|+|
T Consensus       201 ~-----------~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          201 T-----------LERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             T-----------CCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             C-----------CeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            4           445666666  89999999999987  899999999999999999999988774  677899996654


Q ss_pred             ----CCCEEEEEeCCCcEEEEEccCCCCCCCCC---------Cceee------eeecc--CCcceeEEEEecCCEEEEEc
Q 012996          229 ----AEHVFYAGSRDGSIYIAALNAESPSTSSY---------GMHII------GSLSD--HSKAVTCLAYSTGDLLISGS  287 (451)
Q Consensus       229 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~------~~~~~--~~~~v~~~~~~~~~~l~s~~  287 (451)
                          ++.+|++|+.||.|++||+++........         .+.+.      ..+.+  |...|++++|+++.+|++|+
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~  347 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDE  347 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEG
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecC
Confidence                68899999999999999998754210000         00000      01233  77889999999888999999


Q ss_pred             CCCcEEEEeCCCCceEEEeec-------------------------------------CCCCeeEEEEEec--Cceeeec
Q 012996          288 EDGMVRVWDPITHNIVRMFRL-------------------------------------AKGPVNNILVVRR--PLYLNLG  328 (451)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~-------------------------------------~~~~v~~l~~s~~--~~~l~~~  328 (451)
                      .||.|++||+.+++++..+.+                                     |.+.|++++|+++  +.+|++|
T Consensus       348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~  427 (437)
T 3gre_A          348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC  427 (437)
T ss_dssp             GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred             CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence            999999999999988877765                                     7889999999998  8899999


Q ss_pred             cCCCCccccc
Q 012996          329 SFSNPHTSSR  338 (451)
Q Consensus       329 s~d~~i~iw~  338 (451)
                      +.||.|++|+
T Consensus       428 ~~dG~I~iw~  437 (437)
T 3gre_A          428 DNSGLIGIFQ  437 (437)
T ss_dssp             ETTSCEEEEC
T ss_pred             cCCceEEEeC
Confidence            9999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.8e-39  Score=288.09  Aligned_cols=267  Identities=24%  Similarity=0.372  Sum_probs=231.5

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+||+++ .||.|++||+.+++....+..   |...|.+++  |+|+++++++++.| |.|++||+.++..... ..|..
T Consensus        36 ~~l~s~~-~dg~i~iw~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~~  108 (312)
T 4ery_A           36 EWLASSS-ADKLIKIWGAYDGKFEKTISG---HKLGISDVA--WSSDSNLLVSASDD-KTLKIWDVSSGKCLKTLKGHSN  108 (312)
T ss_dssp             SEEEEEE-TTSCEEEEETTTCCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred             CEEEEee-CCCeEEEEeCCCcccchhhcc---CCCceEEEE--EcCCCCEEEEECCC-CEEEEEECCCCcEEEEEcCCCC
Confidence            3688999 999999999999998887765   456788888  99999999999998 9999999998776543 45888


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .|.+++|+|++++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||+++        
T Consensus       109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--------  180 (312)
T 4ery_A          109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------  180 (312)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999955        


Q ss_pred             cccccceec-ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccc---eeEEEECCCCCEEEEE
Q 012996          162 RASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSV---IDAIALDPAEHVFYAG  236 (451)
Q Consensus       162 ~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~---i~~~~~~~~~~~l~~~  236 (451)
                         ...+.. ...+...+..++|+|++  .++++++.|+.|++||+++++.+..+. +...   +......+++.+|++|
T Consensus       181 ---~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          181 ---GQCLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             ---CCEEEEECCSSCCCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             ---CceeeEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence               222333 34567789999999998  899999999999999999999888776 3322   3333445688999999


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc--CCCcEEEEeCC
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPI  298 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~  298 (451)
                      +.||.|++||+.+.         ..+..+.+|...|.+++|+| +.+|++++  .|++|++|+..
T Consensus       256 ~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          256 SEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999876         55778899999999999999 99999986  69999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2e-39  Score=299.78  Aligned_cols=275  Identities=19%  Similarity=0.300  Sum_probs=224.7

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCC---------------CCCceEEecceEeeccCcccCCCCCCccEEEEEC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSW   68 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~   68 (451)
                      +||+|+  +++++||++.+++.+..+..+..               +...|.+++  |+|+|+++++++.| +.|++||+
T Consensus        78 ~la~g~--~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~~l~s~~~d-~~i~iwd~  152 (393)
T 1erj_A           78 YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKFLATGAED-RLIRIWDI  152 (393)
T ss_dssp             EEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSEEEEEETT-SCEEEEET
T ss_pred             EEEEEc--CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCCEEEEEcCC-CeEEEEEC
Confidence            577766  68999999999999888765432               223478888  99999999999998 99999999


Q ss_pred             CCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcE
Q 012996           69 SKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV  146 (451)
Q Consensus        69 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i  146 (451)
                      .+++.... ..|...|.+++|+|++.+|++|+.|+.|++||+.+++....+. +...+.+++|+| ++++|++|+.||.|
T Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v  231 (393)
T 1erj_A          153 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV  231 (393)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            98876543 4588999999999999999999999999999999998877775 567899999999 89999999999999


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc------------eeee
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------------LLRN  214 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~  214 (451)
                      ++||++++......    ........+|...|.+++|++++  .+|++++.|+.|++||+++..            +...
T Consensus       232 ~iwd~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  305 (393)
T 1erj_A          232 RVWDSETGFLVERL----DSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  305 (393)
T ss_dssp             EEEETTTCCEEEEE----C------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             EEEECCCCcEEEee----cccccCCCCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence            99999653210000    00011226799999999999998  899999999999999997643            2233


Q ss_pred             ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-------CCEEEEE
Q 012996          215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-------GDLLISG  286 (451)
Q Consensus       215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~l~s~  286 (451)
                      +. |...|.+++|+|++.+|++|+.|+.|++||..++         .++..+.+|...|.+++|++       +.+|++|
T Consensus       306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg  376 (393)
T 1erj_A          306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  376 (393)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence            33 7788999999999999999999999999999886         45678889999999999875       5789999


Q ss_pred             cCCCcEEEEeCCC
Q 012996          287 SEDGMVRVWDPIT  299 (451)
Q Consensus       287 ~~dg~i~iwd~~~  299 (451)
                      +.||+|++|++..
T Consensus       377 s~Dg~i~iW~~~~  389 (393)
T 1erj_A          377 SGDCKARIWKYKK  389 (393)
T ss_dssp             ETTSEEEEEEEEE
T ss_pred             CCCCcEEECcccc
Confidence            9999999999754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-41  Score=309.47  Aligned_cols=285  Identities=10%  Similarity=0.049  Sum_probs=225.3

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCC--cee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--QVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      ...|.+++  |+|+++++++++.| +.|++||+.++  ... ....|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus        11 ~~~v~~~~--~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C           11 PKPSYEHA--FNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             SSCCSCCE--ECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             CCcEEEEE--ECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            35677777  99999999999888 99999999876  332 33458899999999999999999999999999999988


Q ss_pred             c---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecCC
Q 012996          113 R---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGV  188 (451)
Q Consensus       113 ~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~  188 (451)
                      .   ....+..|...|.+++|+|++++|++++.|+.|++||+++..        .......+.. |...|.+++|+|++ 
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~-  158 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN--------DWWVSKHLKRPLRSTILSLDWHPNN-  158 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------------CCCCEEECSSCCSCEEEEEECTTS-
T ss_pred             CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc--------cceeeeEeecccCCCeEEEEEcCCC-
Confidence            7   667778899999999999999999999999999999996521        1223455666 99999999999988 


Q ss_pred             eeEEEEeeCCCcEEEEEcC------------------CCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          189 SATIVSASEDRTCKVWSLL------------------KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       189 ~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                       .+|++++.|+.|++||+.                  .++.+..+.|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus       159 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          159 -VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             -SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             -CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence             899999999999999985                  2445555567888999999999999999999999999999987


Q ss_pred             CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc--e-------------------------
Q 012996          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN--I-------------------------  302 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--~-------------------------  302 (451)
                      ...     ...+..+.+|...|.+++|+| +.+|++|+.|+.+ +|+.....  .                         
T Consensus       238 ~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (377)
T 3dwl_C          238 EQP-----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE  311 (377)
T ss_dssp             TSC-----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred             CCc-----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence            421     122667889999999999999 8899888877666 66554111  0                         


Q ss_pred             E---------EEe----------------ecCCCCeeEEEEEecCc----eeeeccCCCCcccccc
Q 012996          303 V---------RMF----------------RLAKGPVNNILVVRRPL----YLNLGSFSNPHTSSRR  339 (451)
Q Consensus       303 ~---------~~~----------------~~~~~~v~~l~~s~~~~----~l~~~s~d~~i~iw~~  339 (451)
                      .         ..+                ..|.+.|+++++.+...    .|+|++.||.|++|++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            0         011                12899999999877553    5999999999999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-40  Score=334.26  Aligned_cols=318  Identities=13%  Similarity=0.133  Sum_probs=242.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .+||+|+ .||+|+|||..+++....+.    +...|.+++  |+| |++|++++.| ++|++||+.+++......+...
T Consensus        30 ~~lAsgs-~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~--fsp-g~~L~S~s~D-~~v~lWd~~~~~~~~~~~~~~~  100 (902)
T 2oaj_A           30 NLLAIAT-VTGEVHIYGQQQVEVVIKLE----DRSAIKEMR--FVK-GIYLVVINAK-DTVYVLSLYSQKVLTTVFVPGK  100 (902)
T ss_dssp             TEEEEEE-TTSEEEEECSTTCEEEEECS----SCCCEEEEE--EET-TTEEEEEETT-CEEEEEETTTCSEEEEEECSSC
T ss_pred             CEEEEEe-CCCEEEEEeCCCcEEEEEcC----CCCCEEEEE--EcC-CCEEEEEECc-CeEEEEECCCCcEEEEEcCCCC
Confidence            3789999 99999999998877665442    456799999  999 8889999888 9999999998887666567789


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEee
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWS  150 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd  150 (451)
                      |++++|+|++++|++|+.||.|++||+.++.+.           ..+.+|.++|.+++|+|+ +..|++|+.||.| +||
T Consensus       101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd  179 (902)
T 2oaj_A          101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS  179 (902)
T ss_dssp             EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence            999999999999999999999999999888753           334679999999999995 5789999999999 999


Q ss_pred             Ccchhhhhhhhcccccceecc------------------cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee
Q 012996          151 LLTVFEECESQRASHLYLHSF------------------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL  212 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  212 (451)
                      +++..           .+..+                  ..|...|.+++|+|++  .+|++++.||.|++||+++++++
T Consensus       180 ~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          180 LVENE-----------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             TTTTE-----------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEEETTCCEEEEETTTCCEE
T ss_pred             CCCCc-----------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCcEE
Confidence            96532           22222                  3356789999999998  89999999999999999998876


Q ss_pred             ee--ee-----------------cccceeEEEEC----CCC-CEEEEEeCC-----CcEEEEEcc---------------
Q 012996          213 RN--IV-----------------FPSVIDAIALD----PAE-HVFYAGSRD-----GSIYIAALN---------------  248 (451)
Q Consensus       213 ~~--~~-----------------~~~~i~~~~~~----~~~-~~l~~~~~d-----g~i~i~d~~---------------  248 (451)
                      ..  +.                 +...|.+++|+    |++ .+|++|+.+     ..+.+|++.               
T Consensus       247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~  326 (902)
T 2oaj_A          247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN  326 (902)
T ss_dssp             EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred             EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence            53  21                 13468999994    443 456666554     256666631               


Q ss_pred             --------------------------------------------------------CCCCCCCC-----------CC---
Q 012996          249 --------------------------------------------------------AESPSTSS-----------YG---  258 (451)
Q Consensus       249 --------------------------------------------------------~~~~~~~~-----------~~---  258 (451)
                                                                              ++......           ..   
T Consensus       327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~  406 (902)
T 2oaj_A          327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT  406 (902)
T ss_dssp             HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred             hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence                                                                    11000000           00   


Q ss_pred             ------------------ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE----EE--ee-----c
Q 012996          259 ------------------MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV----RM--FR-----L  308 (451)
Q Consensus       259 ------------------~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~----~~--~~-----~  308 (451)
                                        ......+.+|...+.+++|+| +++|++|+.||+|++||+.++...    ..  +.     +
T Consensus       407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~  486 (902)
T 2oaj_A          407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA  486 (902)
T ss_dssp             EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred             EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence                              000001233444455556678 899999999999999999887431    11  11     7


Q ss_pred             CCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      |...|++++|+||+++||+|+.||+|++|++.+.+
T Consensus       487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~  521 (902)
T 2oaj_A          487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ  521 (902)
T ss_dssp             SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred             CCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence            88899999999999999999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-39  Score=301.53  Aligned_cols=276  Identities=15%  Similarity=0.215  Sum_probs=235.7

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeee--cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR  123 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  123 (451)
                      +.+++..+++++.+ |.|++|++.++......  .|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..
T Consensus        99 ~~~s~~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  177 (401)
T 4aez_A           99 LDWSNLNVVAVALE-RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA  177 (401)
T ss_dssp             EEECTTSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EeecCCCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence            45556778888877 99999999988765443  3688999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i  203 (451)
                      .|.+++|+  +.+|++++.||.|++||++.          .......+.+|...|.+++|++++  .+|++++.|+.|++
T Consensus       178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~v~i  243 (401)
T 4aez_A          178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRI----------ANHQIGTLQGHSSEVCGLAWRSDG--LQLASGGNDNVVQI  243 (401)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEE
T ss_pred             ceEEEEEC--CCEEEEEcCCCCEEEEeccc----------CcceeeEEcCCCCCeeEEEEcCCC--CEEEEEeCCCeEEE
Confidence            99999995  67999999999999999953          234567788899999999999987  89999999999999


Q ss_pred             EEcCCCceeeeee-cccceeEEEECCCCC-EEEEEe--CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          204 WSLLKGRLLRNIV-FPSVIDAIALDPAEH-VFYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      ||+++++....+. +...|.+++|+|++. ++++|+  .|+.|++||+.+..         .+..+ .+...|.+++|+|
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~---------~~~~~-~~~~~v~~~~~s~  313 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA---------RVNTV-DAGSQVTSLIWSP  313 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC---------EEEEE-ECSSCEEEEEECS
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC---------EEEEE-eCCCcEEEEEECC
Confidence            9999998888776 888999999999765 555554  79999999998763         34444 3668899999999


Q ss_pred             -CCEEEE--EcCCCcEEEEeCCCCceEE--EeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          280 -GDLLIS--GSEDGMVRVWDPITHNIVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       280 -~~~l~s--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                       +.+|++  |+.||.|++||+.++....  .+.+|.+.|.+++|+|++.+|++++.||.+++|++.......
T Consensus       314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred             CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence             999998  5589999999999865554  467899999999999999999999999999999998765443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.3e-39  Score=302.31  Aligned_cols=275  Identities=19%  Similarity=0.276  Sum_probs=232.6

Q ss_pred             EEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (451)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  116 (451)
                      ..++  |+++ +.||+|. | ++|+|||..+++....   ..|...|++|+|+|+|++|++|+.||.|+|||+.+++.+.
T Consensus       109 ~~l~--wS~~-n~lAvgl-d-~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          109 NLVD--WSSG-NVLAVAL-D-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             BCEE--ECTT-SEEEEEE-T-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eeEE--ECCC-CEEEEEe-C-CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            3455  8865 4666654 5 9999999999876543   2467789999999999999999999999999999999999


Q ss_pred             eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996          117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS  196 (451)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~  196 (451)
                      .+.+|...+.++.++  +.+|++|+.|+.+++||...          ....+..+.+|...+..+.+++++  .++++++
T Consensus       184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~----------~~~~~~~~~~h~~~~~~~~~~~~g--~~l~s~~  249 (420)
T 4gga_A          184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASGG  249 (420)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEE
T ss_pred             EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc----------cceeeEEecccccceeeeeecCCC--Ceeeeee
Confidence            999999999998876  67999999999999999854          344567788999999999999998  8999999


Q ss_pred             CCCcEEEEEcCCCcee----ee-eecccceeEEEECCCC-CEEEE--EeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996          197 EDRTCKVWSLLKGRLL----RN-IVFPSVIDAIALDPAE-HVFYA--GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (451)
Q Consensus       197 ~d~~i~iwd~~~~~~~----~~-~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (451)
                      .|+.+++|+..+++..    .. ..+...|.+++|+|.+ ..+++  |+.|+.|++||+.++         .....+.. 
T Consensus       250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---------~~~~~~~~-  319 (420)
T 4gga_A          250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---------ACLSAVDA-  319 (420)
T ss_dssp             TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---------EEEEEEEC-
T ss_pred             ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---------ccceeecc-
Confidence            9999999999876532    22 2377899999999965 45554  457999999999886         44445544 


Q ss_pred             CcceeEEEEec-CCEEEEEc--CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          269 SKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       269 ~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      ...+.++.|+| +..+++++  .||.|+|||+.+++++.++.+|.++|++++|+|+|++|+||+.|++|++|++....
T Consensus       320 ~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            46789999999 88777654  79999999999999999999999999999999999999999999999999987543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.3e-40  Score=305.63  Aligned_cols=313  Identities=10%  Similarity=0.105  Sum_probs=252.1

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCceeeee-------------
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKS-------------   77 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-------------   77 (451)
                      ++.+++|++.+++....+..   |...|.+++  |+| +++++++++.| |.|++||+.+.......             
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~---h~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   95 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERI---HGGGINTLD--IEPVEGRYMLSGGSD-GVIVLYDLENSSRQSYYTCKAVCSIGRDHP   95 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCC---CSSCEEEEE--ECTTTCCEEEEEETT-SCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred             cCcceeeccccCcceeeeec---cCCcEEEEE--EecCCCCEEEEEcCC-CeEEEEECCCCcccceEecccccccccccc
Confidence            45688999888888776665   567899999  999 99999999998 99999999876644332             


Q ss_pred             -cCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC---CcEEEEeeCCCcEEEeeCc
Q 012996           78 -LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED---GSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        78 -~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~  152 (451)
                       .|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++++.||.|++||++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence             3888999999999 78899999999999999999998887776 7788999999984   4599999999999999995


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeee----------------
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI----------------  215 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~----------------  215 (451)
                      +           ...+..+..|...|.+++|+|++. .++++++.||.|++||++++. .+..+                
T Consensus       175 ~-----------~~~~~~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T 4a11_B          175 S-----------GSCSHILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT  242 (408)
T ss_dssp             S-----------SCCCEEECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred             C-----------cceeeeecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence            4           345667788999999999999873 369999999999999998765 22222                


Q ss_pred             ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (451)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i  294 (451)
                      .+...|.+++|+|++.+|++++.||.|++||+.+..........    ........+....... +..+++++.|+.|++
T Consensus       243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  318 (408)
T 4a11_B          243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV  318 (408)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred             cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc----ccccccccceeEEecCCCceEEEEecCCEEEE
Confidence            36778999999999999999999999999999987532211100    0011111222222223 677888889999999


Q ss_pred             EeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCc
Q 012996          295 WDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~  347 (451)
                      ||+.+++++..+.+|.++|++++|+|++++|++++.||.+++|++...++.+.
T Consensus       319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          319 YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             EECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence            99999999999999999999999999999999999999999999987665443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.7e-39  Score=292.68  Aligned_cols=291  Identities=14%  Similarity=0.140  Sum_probs=241.0

Q ss_pred             CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----eeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEE
Q 012996           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYM  106 (451)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i  106 (451)
                      ..+|...|.+++  |+|+++++++++.| |.|++|++.++.    ......|...|.+++|+|+++ +|++|+.||.|++
T Consensus         7 ~~~h~~~v~~~~--~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            7 EQAPKDYISDIK--IIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEE--EEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ccCCCCcEEEEE--EcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            346778899999  99999999999988 999999998777    555567889999999999999 9999999999999


Q ss_pred             EEc-CCCcceeeecc--ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          107 WEV-ASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       107 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                      ||+ .+++. ..+.+  |...|.+++|+| +.+|++++.||.|++||+++......  .....++..+. |...|.+++|
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI--AVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE--EEEESCSSSSS-SCCCEEEEEE
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc--cccCCeeeEEe-eCCceEEEEe
Confidence            999 77654 67778  999999999999 99999999999999999853110000  00022344444 8899999999


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCC-Ccee---eeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLK-GRLL---RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (451)
                      +++    .+++++.|+.|++||+++ +...   ....+...+.+++|+| ++.++++++.||.|++|+++......   .
T Consensus       159 ~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~---~  231 (342)
T 1yfq_A          159 NSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY---N  231 (342)
T ss_dssp             CSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST---T
T ss_pred             cCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc---c
Confidence            865    399999999999999988 5432   2223678899999999 99999999999999999998751000   0


Q ss_pred             ceeeeeeccCCc---------ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEEecCceeee
Q 012996          259 MHIIGSLSDHSK---------AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       259 ~~~~~~~~~~~~---------~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~  327 (451)
                      ......+..|..         .|++++|+| +.+|++++.||.|++||+.+++++..+..| .++|++++  |++++|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s  309 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL  309 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence            023445555644         999999999 999999999999999999999999999998 99999999  99999999


Q ss_pred             ccCCCC-cccccc
Q 012996          328 GSFSNP-HTSSRR  339 (451)
Q Consensus       328 ~s~d~~-i~iw~~  339 (451)
                      ++.||. .+.|..
T Consensus       310 ~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          310 ATSDDTFKTNAAI  322 (342)
T ss_dssp             EEECTHHHHCSSS
T ss_pred             EecCCcccccccc
Confidence            999999 777775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.7e-39  Score=298.39  Aligned_cols=276  Identities=15%  Similarity=0.234  Sum_probs=235.9

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCe
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPI   83 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v   83 (451)
                      +++++ .||.|++||+.+++....+...  +...|.+++  |+|+++++++++.+ |.|++||+.++..... ..|...|
T Consensus       106 l~~~~-~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~--~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v  179 (401)
T 4aez_A          106 VVAVA-LERNVYVWNADSGSVSALAETD--ESTYVASVK--WSHDGSFLSVGLGN-GLVDIYDVESQTKLRTMAGHQARV  179 (401)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECC--TTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEEE-CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEE--ECCCCCEEEEECCC-CeEEEEECcCCeEEEEecCCCCce
Confidence            56677 7999999999999988777653  567899999  99999999999988 9999999988776544 4688999


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      .+++|  ++++|++|+.||.|++||+. .+..+..+.+|.+.|.+++|+|++++|++|+.||.|++||+++         
T Consensus       180 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---------  248 (401)
T 4aez_A          180 GCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS---------  248 (401)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---------
T ss_pred             EEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC---------
Confidence            99999  46799999999999999998 4567788899999999999999999999999999999999954         


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE--EeC
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA--GSR  238 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~  238 (451)
                        ......+..|...|.+++|+|++. .++++++  .|+.|++||+.+++.+..+.+...+.+++|+|++.++++  |+.
T Consensus       249 --~~~~~~~~~~~~~v~~~~~~p~~~-~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  325 (401)
T 4aez_A          249 --SIPKFTKTNHNAAVKAVAWCPWQS-NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP  325 (401)
T ss_dssp             --SSEEEEECCCSSCCCEEEECTTST-TEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred             --CCccEEecCCcceEEEEEECCCCC-CEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence              445667788999999999999764 5777765  799999999999999999999999999999999999999  448


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      ||.|++||+.+..       ......+.+|...|.+++|+| +.+|++++.||.|++||+.+++.+....
T Consensus       326 dg~i~v~~~~~~~-------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          326 DNNLSIWSYSSSG-------LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             TCEEEEEEEETTE-------EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             CCcEEEEecCCcc-------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            9999999998753       234455778999999999999 9999999999999999999998776543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.3e-39  Score=298.21  Aligned_cols=293  Identities=18%  Similarity=0.282  Sum_probs=238.8

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      ++||+|.  |++|+|||..+|+....+..+ +|...|.+++  |+|+|++||+|+.| |.|++||+.+++.... ..|..
T Consensus       117 n~lAvgl--d~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~--fspdg~~lasgs~D-g~v~iWd~~~~~~~~~~~~h~~  190 (420)
T 4gga_A          117 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA  190 (420)
T ss_dssp             SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCcEEEEE--ECCCCCEEEEEECC-CeEEEEEcCCCcEEEEEeCCCC
Confidence            4677766  899999999999988877644 4667899999  99999999999998 9999999998876544 45778


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      .+.+++++  +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+..++.     
T Consensus       191 ~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~-----  263 (420)
T 4gga_A          191 RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-----  263 (420)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS-----
T ss_pred             ceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc-----
Confidence            88888774  789999999999999998765 4567788999999999999999999999999999999996532     


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEE--eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS--ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-  237 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  237 (451)
                        .....+.....|...|.+++|+|.+. .++++  |+.|++|++||+.+++....+.....+.++.|+|+++.+++++ 
T Consensus       264 --~~~~~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          264 --GGWVPLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             --SCSCCSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             --ccceeeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence              12234566778999999999999765 45554  4579999999999999999999889999999999999988765 


Q ss_pred             -CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE
Q 012996          238 -RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (451)
Q Consensus       238 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (451)
                       .|+.|++||+.+.         .++..+.+|...|++++|+| +.+|+||+.||+|+|||+....+.+....+...+..
T Consensus       341 ~~d~~I~iwd~~~~---------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~  411 (420)
T 4gga_A          341 FAQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK  411 (420)
T ss_dssp             TTTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred             cCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence             7899999999876         56788999999999999999 999999999999999999888777777666655554


Q ss_pred             EEEEe
Q 012996          316 ILVVR  320 (451)
Q Consensus       316 l~~s~  320 (451)
                      ..|..
T Consensus       412 ~s~~~  416 (420)
T 4gga_A          412 SSLIH  416 (420)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            44443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=287.27  Aligned_cols=274  Identities=19%  Similarity=0.248  Sum_probs=231.1

Q ss_pred             EEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (451)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  116 (451)
                      .+++  ||+++ .||++ .| ++|+|||+.+++....   ..|...|.+++|+|++++|++|+.||.|++||+.+++.+.
T Consensus        29 ~~l~--WS~~~-~lAvg-~D-~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           29 NLVD--WSSGN-VLAVA-LD-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             BCEE--ECTTS-EEEEE-ET-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eEEE--ECCCC-EEEEE-eC-CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence            4566  99876 66655 45 9999999998876543   2467789999999999999999999999999999999999


Q ss_pred             eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996          117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS  196 (451)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~  196 (451)
                      .+.+|...+.++.+.  +..+++++.++.+++|+...          ....+..+.+|...+..+.+.+++  .++++++
T Consensus       104 ~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~  169 (318)
T 4ggc_A          104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASGG  169 (318)
T ss_dssp             EEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEE
T ss_pred             EecCccceEEEeecC--CCEEEEEecCCceEeeecCC----------CceeEEEEcCccCceEEEEEcCCC--CEEEEEe
Confidence            999999988776654  67999999999999999854          344567788999999999999988  8999999


Q ss_pred             CCCcEEEEEcCCCceeee-----eecccceeEEEECCCCCEE---EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996          197 EDRTCKVWSLLKGRLLRN-----IVFPSVIDAIALDPAEHVF---YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (451)
Q Consensus       197 ~d~~i~iwd~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (451)
                      .|+.|++||+++++....     ..+...+.+++++|.+..+   ++++.++.|++||.....          ......+
T Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------~~~~~~~  239 (318)
T 4ggc_A          170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------CLSAVDA  239 (318)
T ss_dssp             TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------EEEEEEC
T ss_pred             cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------ccccccc
Confidence            999999999988764322     2266789999999966543   356788999999998753          2234457


Q ss_pred             CcceeEEEEec-CCEEEEE--cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          269 SKAVTCLAYST-GDLLISG--SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       269 ~~~v~~~~~~~-~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      ...+..+.|+| +..++++  +.||.|++||+.+++++.++.+|.++|++++|+|++++|++||.||+|++|++...
T Consensus       240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            78899999999 7777665  47999999999999999999999999999999999999999999999999998653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.8e-39  Score=315.43  Aligned_cols=300  Identities=17%  Similarity=0.235  Sum_probs=259.6

Q ss_pred             EEeecCCCCCCeEEEECccC----ceeeeeecCCCCCCc-eEEecceEee--ccCcccCCCCCCccEEEEECCCC-----
Q 012996            4 LIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHG-LACVGQRFLA--SSQLREQPSASSGSILYWSWSKP-----   71 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~-v~~~~~~~~~--~~~~l~~~~~d~g~i~vw~~~~~-----   71 (451)
                      +||+++  ++.|+|||+.++    +....+.+   |... |.+++  |+|  +++++++++.| |.|++||+.++     
T Consensus        32 ~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~---h~~~~v~~~~--~sp~~~~~~l~s~~~d-g~v~vw~~~~~~~~~~  103 (615)
T 1pgu_A           32 AIAYPC--GKSAFVRCLDDGDSKVPPVVQFTG---HGSSVVTTVK--FSPIKGSQYLCSGDES-GKVIVWGWTFDKESNS  103 (615)
T ss_dssp             EEEEEE--TTEEEEEECCSSCCSSCSEEEECT---TTTSCEEEEE--ECSSTTCCEEEEEETT-SEEEEEEEEEEGGGTE
T ss_pred             EEEEec--CCeEEEEECCCCCCccccceEEec---CCCceEEEEE--ECcCCCCCEEEEecCC-CEEEEEeCCCCccccc
Confidence            566666  789999999998    78777765   4567 89999  999  99999999998 99999999644     


Q ss_pred             ---cee-eeecCCCCeeEEEECCCCcEEEEeccC----CCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeC
Q 012996           72 ---QVE-VKSLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSE  142 (451)
Q Consensus        72 ---~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~  142 (451)
                         ... ....|..+|.+++|+|++++|++++.+    +.|++||  .++.+..+.+|...|.+++|+|+++ .+++++.
T Consensus       104 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  181 (615)
T 1pgu_A          104 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD  181 (615)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeC
Confidence               222 234478899999999999999999887    6788887  6778889999999999999999997 8999999


Q ss_pred             CCcEEEeeCcchhhhhhhhcccccceecccCCcC---ceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCceeeee---
Q 012996          143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNI---  215 (451)
Q Consensus       143 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---  215 (451)
                      ||.|++||+.+           ...+..+.+|..   .|.+++|+|+ +  .++++++.||.|++||+.+++.+..+   
T Consensus       182 d~~v~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  248 (615)
T 1pgu_A          182 DGSVVFYQGPP-----------FKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKISCFDGKSGEFLKYIEDD  248 (615)
T ss_dssp             TTEEEEEETTT-----------BEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             CCcEEEEeCCC-----------cceeeeecccCCCCceEEEEEECCCCC--CEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence            99999999843           456677888998   9999999998 7  89999999999999999999999888   


Q ss_pred             --ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC----CcceeEEEEecCCEEEEEcCC
Q 012996          216 --VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSED  289 (451)
Q Consensus       216 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~s~~~d  289 (451)
                        .|...|.+++|+ ++.+|++++.||.|++||+.+.         ..+..+..+    ...+.++.|+.+.++++++.|
T Consensus       249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  318 (615)
T 1pgu_A          249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD  318 (615)
T ss_dssp             TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred             ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---------cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence              688999999999 9999999999999999999875         445555555    467888888559999999999


Q ss_pred             CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |.|++||+.+++++..+..|.++|++++| |+   |++++.||.+++|+..
T Consensus       319 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          319 GTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             SCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred             CCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence            99999999999999999999999999999 77   7777777777777754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.9e-39  Score=292.64  Aligned_cols=282  Identities=15%  Similarity=0.184  Sum_probs=241.3

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCc-eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  115 (451)
                      ..+.+++  |+|+|+.++++..+ +.+.+|...... ......|...|.+++|+|++++|++++ ||.|++||+.++...
T Consensus        10 ~~v~~~~--~s~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A           10 KPAYSFH--VTADGQMQPVPFPP-DALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EECCEEE--ECSSSCEEECCCCT-TSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             CceeEEE--ECCCCCEEEeecCC-CcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            4566777  99999999988877 556666544333 334456889999999999999999998 999999999887543


Q ss_pred             e---eec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          116 K---KWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       116 ~---~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      .   .+.  .|...|.+++|+|++++|++++.||.|++||+.+         ........+..|...|.+++|++++  .
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~--~  154 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---------PTPRIKAELTSSAPACYALAISPDS--K  154 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---------C--EEEEEEECSSSCEEEEEECTTS--S
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC---------CCcceeeecccCCCceEEEEECCCC--C
Confidence            3   333  7899999999999999999999999999999965         2223456677899999999999987  8


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      ++++++.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.||.|++||+++.         ..+..+ .|.
T Consensus       155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~-~~~  224 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQH-DFT  224 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEE-ECS
T ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---------ceEeee-cCC
Confidence            99999999999999999999888887 7889999999999999999999999999999876         333333 477


Q ss_pred             cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       270 ~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      ..+.+++|+| +.+|++++.||.|++||+.+++.. .+..|..+|.+++|+|++++|++++.||.+++|+......
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            8999999999 999999999999999999988754 6778899999999999999999999999999999886543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.2e-40  Score=299.12  Aligned_cols=281  Identities=11%  Similarity=0.069  Sum_probs=219.9

Q ss_pred             CceEEecceEeeccCcccCCCCCC------ccEEEEECCCCcee-----------eeecCCCCeeEEEECCCCcEEEEe-
Q 012996           37 HGLACVGQRFLASSQLREQPSASS------GSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSHGTYIAGG-   98 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~------g~i~vw~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~-   98 (451)
                      .+|.+++  |+|++++|++||.+.      +.|++|++......           ....+...|.+++++  ++.+++| 
T Consensus        15 ~PV~sv~--fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~   90 (365)
T 4h5i_A           15 YPAYGAK--FLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC   90 (365)
T ss_dssp             SCEEEEE--EEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred             CCEEEEE--EeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence            4689999  999999999987541      36999998754321           112356678888765  5566655 


Q ss_pred             ----------ccCCCEEEEEcCCCcceee---------eccccCCeeEEEEccCCcEEEE--eeCCCcEEEeeCcchhhh
Q 012996           99 ----------GQSGDIYMWEVASGRLLKK---------WHAHYRAVTCLVFSEDGSFLIS--GSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        99 ----------~~dg~i~iwd~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~~~  157 (451)
                                +.|+.+++|++........         ...+...+.+++|+|||+++++  ++.|++|++||+.+    
T Consensus        91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~----  166 (365)
T 4h5i_A           91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD----  166 (365)
T ss_dssp             CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT----
T ss_pred             CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC----
Confidence                      4578899999876543211         1234566899999999999764  45789999999955    


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee---ecccceeEEEECCCCCEEE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI---VFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~  234 (451)
                             ...+..+ .|...|.+++|+|++  .++++++.+ .+.+|+..+++.+...   .+...+.+++|+|++.+++
T Consensus       167 -------~~~~~~~-~~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~  235 (365)
T 4h5i_A          167 -------LTEKFEI-ETRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI  235 (365)
T ss_dssp             -------TEEEEEE-ECSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred             -------CcEEEEe-CCCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence                   3334444 377889999999998  788888755 5677777777665433   2677899999999999999


Q ss_pred             EEeCCC----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe-ec
Q 012996          235 AGSRDG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RL  308 (451)
Q Consensus       235 ~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~  308 (451)
                      +++.++    .++.|++......     ......+.+|...|++++|+| +.+||+|+.|++|+|||+.+++++.++ .+
T Consensus       236 ~~s~d~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          236 AASLKKGKGIVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA  310 (365)
T ss_dssp             EEEESSSCCEEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred             EEecCCcceeEEeecccccceec-----ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence            998887    5888888765310     122456778999999999999 999999999999999999999999885 78


Q ss_pred             CCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      |..+|++++|+|||++||++|.|++|+||++..
T Consensus       311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999999999999999999999853

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1e-39  Score=292.56  Aligned_cols=249  Identities=18%  Similarity=0.170  Sum_probs=208.5

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCc
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~  152 (451)
                      ..|.+.|.+++|+|+|++||+|+.|+.|+|||+.++.  .+..+.+|.+.|.+++|+|  ++++|++|+.|++|++||++
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            4588999999999999999999999999999998774  4677899999999999986  48999999999999999996


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee---eeee-cccceeEEEECC
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV-FPSVIDAIALDP  228 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~-~~~~i~~~~~~~  228 (451)
                      +         ........+.+|...|.+++|+|+..+.+|++++.|+.|++||++.+...   ..+. |...+.+++|+|
T Consensus        90 ~---------~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           90 N---------GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             S---------SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             C---------CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            5         22234566788999999999999844489999999999999999876322   2222 677899999999


Q ss_pred             C-----------------CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C----CEEEEE
Q 012996          229 A-----------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISG  286 (451)
Q Consensus       229 ~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~l~s~  286 (451)
                      +                 +.+|++|+.|+.|++||+....      ....+..+.+|...|.+++|+| +    .+|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence            7                 4789999999999999996532      1245667889999999999999 5    789999


Q ss_pred             cCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          287 SEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       287 ~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +.||+|++||+.+..    ....+..|.+.|.+++|+|++++|++++.|+.+++|+..
T Consensus       235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999987631    234556788999999999999999999999999999965

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.7e-38  Score=321.73  Aligned_cols=270  Identities=19%  Similarity=0.254  Sum_probs=231.8

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+||+++ .||.|+|||+.+++.+..+..   |...|.+++  |+|+++++++++.+ |.|++||+.++..... ..|..
T Consensus        26 ~~la~~~-~~g~v~iwd~~~~~~~~~~~~---~~~~v~~~~--~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~   98 (814)
T 3mkq_A           26 PWVLTTL-YSGRVEIWNYETQVEVRSIQV---TETPVRAGK--FIARKNWIIVGSDD-FRIRVFNYNTGEKVVDFEAHPD   98 (814)
T ss_dssp             SEEEEEE-TTSEEEEEETTTTEEEEEEEC---CSSCEEEEE--EEGGGTEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred             CEEEEEe-CCCEEEEEECCCCceEEEEec---CCCcEEEEE--EeCCCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCC
Confidence            3688898 999999999999999988875   446788888  99999999999998 9999999998876544 45889


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      .|.+++|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+| ++..|++++.||.|++||+.+      
T Consensus        99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------  172 (814)
T 3mkq_A           99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------  172 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------
T ss_pred             CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------
Confidence            9999999999999999999999999999887 66778889999999999999 889999999999999999954      


Q ss_pred             hhcccccceeccc-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996          160 SQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       160 ~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (451)
                           ......+. .+...+.+++|+|.+++.++++++.||.|++||+.+++.+..+. |...|.+++|+|++.++++++
T Consensus       173 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          173 -----STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             -----SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             -----CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence                 22233333 34588999999994444899999999999999999999888887 788999999999999999999


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCC
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~  299 (451)
                      .||.|++||+.+.         .....+..|...+.+++|+| +. .+++++.++.+.+|++..
T Consensus       248 ~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          248 EDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             TTSCEEEEETTTC---------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             CCCeEEEEECCCC---------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            9999999999875         45677888999999999999 55 234445566788887653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-38  Score=291.03  Aligned_cols=276  Identities=19%  Similarity=0.247  Sum_probs=245.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .+|++++ .||.|++||+.+++.+..+..   |...|.+++  |+|+++++++++.| |.|++||+.+++......+...
T Consensus        45 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~  117 (369)
T 3zwl_B           45 DLLFSCS-KDSSASVWYSLNGERLGTLDG---HTGTIWSID--VDCFTKYCVTGSAD-YSIKLWDVSNGQCVATWKSPVP  117 (369)
T ss_dssp             CEEEEEE-SSSCEEEEETTTCCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSC
T ss_pred             CEEEEEe-CCCEEEEEeCCCchhhhhhhh---cCCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEeecCCC
Confidence            4688999 999999999999999988875   456788888  99999999999998 9999999999888777778899


Q ss_pred             eeEEEECCCCcEEEEeccC-----CCEEEEEcCCCc-----------ceeeeccccC--CeeEEEEccCCcEEEEeeCCC
Q 012996           83 IKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR-----------LLKKWHAHYR--AVTCLVFSEDGSFLISGSEDG  144 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg  144 (451)
                      |.+++|+|+++++++++.+     |.|++||+..+.           ....+..|.+  .+.+++|+|++++|++++.||
T Consensus       118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  197 (369)
T 3zwl_B          118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG  197 (369)
T ss_dssp             EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred             eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence            9999999999999999998     999999997764           3344455666  999999999999999999999


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEE
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI  224 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~  224 (451)
                      .|++||+.+          .......+..|...|.+++|++++  .+|++++.|+.|++||+++++.+..+.+...+.++
T Consensus       198 ~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  265 (369)
T 3zwl_B          198 KISKYDVSN----------NYEYVDSIDLHEKSISDMQFSPDL--TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTA  265 (369)
T ss_dssp             EEEEEETTT----------TTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             EEEEEECCC----------CcEeEEEEecCCCceeEEEECCCC--CEEEEecCCceEEEEECCCCceeeeecCCCCceeE
Confidence            999999954          144667788899999999999988  89999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEeCCC--------------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996          225 ALDPAEHVFYAGSRDG--------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (451)
Q Consensus       225 ~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d  289 (451)
                      +|+|++.++++++.++              .+++||....         ..+..+.+|...|++++|+| +.+|++++.|
T Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             EECSSSSEEEEEECCC-------------CEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---------cchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence            9999999999999988              8999999876         55678889999999999999 9999999999


Q ss_pred             CcEEEEeCCCCceEEEe
Q 012996          290 GMVRVWDPITHNIVRMF  306 (451)
Q Consensus       290 g~i~iwd~~~~~~~~~~  306 (451)
                      |.|++|++..+.....+
T Consensus       337 g~v~iw~~~~~~~~~~~  353 (369)
T 3zwl_B          337 GFIRLHHFEKSYFDFKY  353 (369)
T ss_dssp             SEEEEEEECHHHHTCCC
T ss_pred             CeEEEEECccccchhHH
Confidence            99999999876544433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.9e-38  Score=296.58  Aligned_cols=296  Identities=17%  Similarity=0.263  Sum_probs=248.9

Q ss_pred             eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCE
Q 012996           26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (451)
Q Consensus        26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i  104 (451)
                      ...+.+|...+  +.+    +.++++++++++.| |.|++||+.+++.... ..|...|.+++|+|++ +|++|+.||.|
T Consensus       114 ~~~l~~h~~~v--~~~----~~~~~~~l~sgs~d-g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i  185 (464)
T 3v7d_B          114 RTTLRGHMTSV--ITC----LQFEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEECCSSSC--EEE----EEEETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred             eEEEcCCCCCc--EEE----EEECCCEEEEEcCC-CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence            34555544322  344    44577899999998 9999999998876654 4589999999999988 89999999999


Q ss_pred             EEEEcCCCcceeeeccccCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCcchhhhhhh------------hcccccceec
Q 012996          105 YMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECES------------QRASHLYLHS  170 (451)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~~  170 (451)
                      ++||+.+++.+..+.+|.+.|.+++|+  +++.+|++|+.||.|++||+.+.......            ..........
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            999999999999999999999999998  47899999999999999999764321110            0011123556


Q ss_pred             ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      +.+|...+.++  ++++  .++++++.||.|++||+++++.+..+. |...|.+++|+|++.++++|+.||.|++||+.+
T Consensus       266 ~~~~~~~v~~~--~~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             ECCCSSCEEEE--EEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             ccCccceEEEE--cCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            78899998877  4566  799999999999999999999988887 788999999999999999999999999999988


Q ss_pred             CCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      +         ..+..+.+|...|.++.|+ +.+|++|+.||.|++||+.++.....+. |...+..++|+|++.+|++++
T Consensus       342 ~---------~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          342 G---------ELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             T---------EEEEEECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE
T ss_pred             C---------cEEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec
Confidence            6         6678889999999999998 6899999999999999999988776654 577889999999999999998


Q ss_pred             CCCCccccccCCCCCC
Q 012996          330 FSNPHTSSRRHGSQLP  345 (451)
Q Consensus       330 ~d~~i~iw~~~~~~~~  345 (451)
                       ||.+++|++..+.+.
T Consensus       411 -dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          411 -ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             -TTEEEEEETTTCCEE
T ss_pred             -CCeEEEEECCCCcEE
Confidence             999999999876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-38  Score=295.41  Aligned_cols=268  Identities=17%  Similarity=0.239  Sum_probs=230.8

Q ss_pred             EEeecCCCCCCeEEEECccCc------eeeeeecCCCCCCceEEecceEeec----c---CcccCCCCCCccEEEEECCC
Q 012996            4 LIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLAS----S---QLREQPSASSGSILYWSWSK   70 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~----~---~~l~~~~~d~g~i~vw~~~~   70 (451)
                      +|++|+ .||.|++||+.+++      .+..+..   |...|.+++  |+|+    +   +++++++.| |.|++|++.+
T Consensus        28 ~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~~g~~~~~l~s~~~d-g~i~iw~~~~  100 (397)
T 1sq9_A           28 FTVSCS-GDGYLKVWDNKLLDNENPKDKSYSHFV---HKSGLHHVD--VLQAIERDAFELCLVATTSFS-GDLLFYRITR  100 (397)
T ss_dssp             EEEEEE-TTSEEEEEESBCCTTCCGGGGEEEEEC---CTTCEEEEE--EEEEEETTTEEEEEEEEEETT-SCEEEEEEEE
T ss_pred             eEEEEc-CCCEEEEEECCCcccccCCCcceEEec---CCCcEEEEE--EecccccCCccccEEEEEcCC-CCEEEEEccC
Confidence            688999 99999999999988      6666664   556788888  9999    9   999999998 9999999987


Q ss_pred             Cc------eeeeecC-----CCCeeEEEEC----CCCcE-EEEeccCCCEEEEEcCC------Cccee-----ee-----
Q 012996           71 PQ------VEVKSLP-----AEPIKPIAAN----SHGTY-IAGGGQSGDIYMWEVAS------GRLLK-----KW-----  118 (451)
Q Consensus        71 ~~------~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~-----  118 (451)
                      +.      ......|     ...|.+++|+    |++++ |++|+.||.|++||+.+      ++.+.     .+     
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (397)
T 1sq9_A          101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE  180 (397)
T ss_dssp             CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred             CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec
Confidence            76      3344445     4899999999    99999 99999999999999998      77776     77     


Q ss_pred             --ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC---C---cCceeEEEEeecCCee
Q 012996          119 --HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG---H---TLRITDIVIGYGGVSA  190 (451)
Q Consensus       119 --~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~i~~~~~~~~~  190 (451)
                        ..|...|.+++|+|++ +|++++.||.|++||+++           ...+..+..   |   ...|.+++|++++  .
T Consensus       181 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~--~  246 (397)
T 1sq9_A          181 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-----------LRPLYNFESQHSMINNSNSIRSVKFSPQG--S  246 (397)
T ss_dssp             CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-----------TEEEEEEECCC---CCCCCEEEEEECSST--T
T ss_pred             cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-----------CceeEEEeccccccccCCccceEEECCCC--C
Confidence              4488999999999999 999999999999999954           345666677   8   9999999999988  8


Q ss_pred             EEEEeeCC---CcEEEEEcCCCceeeeee--------------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996          191 TIVSASED---RTCKVWSLLKGRLLRNIV--------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (451)
Q Consensus       191 ~l~s~~~d---~~i~iwd~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (451)
                      +|++++.|   +.|++||+++++.+..+.              +...|.+++|+|++++|++++.||.|++||+.+.   
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---  323 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---  323 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---
T ss_pred             EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---
Confidence            99999999   999999999998888776              6788999999999999999999999999999876   


Q ss_pred             CCCCCceeeeeec------cC---------------CcceeEEEEec-C----------CEEEEEcCCCcEEEEeCCCCc
Q 012996          254 TSSYGMHIIGSLS------DH---------------SKAVTCLAYST-G----------DLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       254 ~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~-~----------~~l~s~~~dg~i~iwd~~~~~  301 (451)
                            ..+..+.      +|               ...|++++|+| +          .+|++++.||.|++||+.+++
T Consensus       324 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          324 ------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                  4566666      67               99999999999 6          799999999999999998763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.4e-39  Score=293.83  Aligned_cols=281  Identities=14%  Similarity=0.186  Sum_probs=231.4

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCC--CCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceeee-e
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCAS--PPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVK-S   77 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~~-~   77 (451)
                      +++++ .++.|++||+.+++.+..+..+..  +...+.+++  |+|+    +.++++++.| |.|++||+.+++.... .
T Consensus        37 ~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           37 VFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             EEEEE-ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEEEETT-CEEEEECTTTCCEEEEEE
T ss_pred             EEEEC-CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEEecCC-CEEEEEEchhceEeeeec
Confidence            44444 477999999999988887775543  567899999  9999    6689999888 9999999998776544 3


Q ss_pred             cCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           78 LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        78 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .|...|.+++|+| ++++|++|+.||.|++||+.+++.+..+   ..|...|.+++|+|++++|++++.||.|++||+++
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            4889999999999 9999999999999999999999988888   78999999999999999999999999999999987


Q ss_pred             hhhhhhhhc-----------------ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-----
Q 012996          154 VFEECESQR-----------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-----  211 (451)
Q Consensus       154 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----  211 (451)
                      .........                 ...........|...|.+++|+  +  .++++++.|+.|++||+.++..     
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~d~~i~~wd~~~~~~~~~~~  268 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G--DLILSKSCENAIVCWKPGKMEDDIDKI  268 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T--TEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C--CEEEEEecCCEEEEEeCCCcccccccc
Confidence            543221110                 0111223344599999999998  4  6999999999999999987644     


Q ss_pred             ---------eeeee-cccceeEEEECCC--CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC--CcceeEEEE
Q 012996          212 ---------LRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAY  277 (451)
Q Consensus       212 ---------~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~  277 (451)
                               +..+. +...|.+++|+|+  +.+|++|+.||.|++||+.......     .....+.+|  ...|++++|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          269 KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTCCSCEEEEEE
T ss_pred             ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEcccccCCceEEEEe
Confidence                     44444 6778999999999  9999999999999999998864211     234466677  799999999


Q ss_pred             ec-CCEEEEEcCCCcEEEEeCC
Q 012996          278 ST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       278 ~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      +| +.+|++++.||.|++||+.
T Consensus       344 s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          344 SRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCCeEEEEeCCCEEEEEEec
Confidence            99 9999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-38  Score=322.14  Aligned_cols=290  Identities=18%  Similarity=0.271  Sum_probs=256.7

Q ss_pred             eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCE
Q 012996           26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (451)
Q Consensus        26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i  104 (451)
                      .+.+.+   |...|.+++  |+|+++++++++.+ |.|++||+.++..... ..|..+|.+++|+|++++|++|+.||.|
T Consensus         6 ~~~~~~---h~~~v~~i~--~sp~~~~la~~~~~-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            6 KKTFSN---RSDRVKGID--FHPTEPWVLTTLYS-GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEE---ECSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             ceeeec---CCCceEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            344544   557789999  99999999999988 9999999988776544 4588999999999999999999999999


Q ss_pred             EEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      ++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+          .......+.+|...|.+++|+
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~----------~~~~~~~~~~~~~~v~~~~~~  149 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----------NWALEQTFEGHEHFVMCVAFN  149 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----------TSEEEEEEECCSSCEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----------CceEEEEEcCCCCcEEEEEEE
Confidence            9999999999999999999999999999999999999999999999954          234566778899999999999


Q ss_pred             e-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996          185 Y-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (451)
Q Consensus       185 ~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (451)
                      | ++  ..+++++.||.|++||+.++.....+.  +...+.+++|+|  ++.++++++.||.|++||+.+.         
T Consensus       150 p~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------  218 (814)
T 3mkq_A          150 PKDP--STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---------  218 (814)
T ss_dssp             TTEE--EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---------
T ss_pred             cCCC--CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------
Confidence            9 66  899999999999999999888777666  348899999999  9999999999999999999875         


Q ss_pred             eeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCcccc
Q 012996          260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSS  337 (451)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw  337 (451)
                      ..+..+.+|...|++++|+| +.+|++++.||.|++||+.+++.+..+..|...+.+++|+|++..+ ++++.++.+.+|
T Consensus       219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  298 (814)
T 3mkq_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL  298 (814)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEE
Confidence            56778889999999999999 9999999999999999999999999999999999999999998743 555567778888


Q ss_pred             ccCCC
Q 012996          338 RRHGS  342 (451)
Q Consensus       338 ~~~~~  342 (451)
                      +....
T Consensus       299 ~~~~~  303 (814)
T 3mkq_A          299 SLGND  303 (814)
T ss_dssp             ECSCC
T ss_pred             EcCCC
Confidence            86644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.3e-38  Score=295.19  Aligned_cols=281  Identities=19%  Similarity=0.338  Sum_probs=242.7

Q ss_pred             eeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996           28 RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (451)
Q Consensus        28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  106 (451)
                      .+..+..+...|.++.    ++++++++++.| |.|++||..+++.... ..|...|.+++|  ++++|++|+.||.|++
T Consensus       125 ~~~~~~~~~~~v~~~~----~d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          125 RIHCRSETSKGVYCLQ----YDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV  197 (435)
T ss_dssp             CEECCCSSCCCEEEEE----CCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEecccCCCCcEEEEE----ECCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence            3455666777888866    489999999998 9999999998776544 458899999999  7899999999999999


Q ss_pred             EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (451)
                      ||+.+++.+..+.+|...|.+++|+  +.++++|+.||.|++||+.+.        ........+.+|...|.++++  +
T Consensus       198 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~--~  265 (435)
T 1p22_A          198 WDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP--------TDITLRRVLVGHRAAVNVVDF--D  265 (435)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS--------SCCEEEEEECCCSSCEEEEEE--E
T ss_pred             EECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC--------CCceeeeEecCCCCcEEEEEe--C
Confidence            9999999999999999999999997  458999999999999999652        112223567889999999998  4


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      +  .++++++.||.|++||+++++.+..+. +...+.++++  ++.++++|+.||.|++||++++         ..+..+
T Consensus       266 ~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~  332 (435)
T 1p22_A          266 D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRVL  332 (435)
T ss_dssp             T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEEEE
T ss_pred             C--CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---------CEEEEE
Confidence            4  799999999999999999999998887 7888999998  5789999999999999999886         557788


Q ss_pred             ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc---------eEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996          266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                      .+|...|.+++|+ +.+|++|+.||.|++||+.++.         ++..+..|.++|++++|  ++.+|++++.||.|++
T Consensus       333 ~~h~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          333 EGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             CCCSSCEEEEECC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             eCCcCcEEEEEec-CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence            8999999999995 7899999999999999997766         88999999999999999  7899999999999999


Q ss_pred             cccCCCC
Q 012996          337 SRRHGSQ  343 (451)
Q Consensus       337 w~~~~~~  343 (451)
                      |++.+..
T Consensus       410 wd~~~~~  416 (435)
T 1p22_A          410 WDFLNDP  416 (435)
T ss_dssp             EC-----
T ss_pred             EECCCCC
Confidence            9987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.2e-38  Score=283.92  Aligned_cols=281  Identities=21%  Similarity=0.311  Sum_probs=228.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceee--eeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLP   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~   79 (451)
                      .+||||+ .||+|+|||+.+++...  ......+|...|.++.  |+|+++++++++.| +.|++|+......... ..+
T Consensus        52 ~~l~S~s-~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~--~s~dg~~l~s~~~d-~~i~~~~~~~~~~~~~~~~~  127 (340)
T 4aow_A           52 DMILSAS-RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV--ISSDGQFALSGSWD-GTLRLWDLTTGTTTRRFVGH  127 (340)
T ss_dssp             TEEEEEE-TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEc-CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE--ECCCCCEEEEEccc-ccceEEeecccceeeeecCC
Confidence            3789999 99999999987654321  1122235668899999  99999999999998 9999999987776544 446


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-eeeeccccCCeeEEEEccCC--cEEEEeeCCCcEEEeeCcchhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSLLTVFE  156 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~  156 (451)
                      ...+..+.+++++.+|++|+.|+.+++||+..... .....+|...+.+++|++++  .++++++.|+.|++||+.+   
T Consensus       128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---  204 (340)
T 4aow_A          128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---  204 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---
T ss_pred             CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---
Confidence            77899999999999999999999999999876544 34457899999999998854  5788999999999999954   


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (451)
                              ......+.+|...|++++|+|++  .+|++++.||.|++||+++.+.+..+.+...+.+++|+|++.++ ++
T Consensus       205 --------~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~  273 (340)
T 4aow_A          205 --------CKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CA  273 (340)
T ss_dssp             --------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EE
T ss_pred             --------CceeeEecCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-ec
Confidence                    45667788999999999999988  89999999999999999999999999988999999999987655 56


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  301 (451)
                      +.|+.|++||++..................+|...|++++|+| +++|++|+.||.|+|||+.+|.
T Consensus       274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            6799999999987532211111122234557899999999999 9999999999999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.3e-38  Score=309.98  Aligned_cols=266  Identities=24%  Similarity=0.356  Sum_probs=223.1

Q ss_pred             EEEeecCCCCCCeEEEECccCc-----eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-
Q 012996            3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-   76 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-   76 (451)
                      .+|+||+ .||+|++||+.+..     ....+.   +|...|.+++  |+|+++++++++.| |+|++||+.++..... 
T Consensus       396 ~~l~s~s-~D~~i~~W~~~~~~~~~~~~~~~~~---~h~~~v~~v~--~s~~g~~l~sgs~D-g~v~vwd~~~~~~~~~~  468 (694)
T 3dm0_A          396 DIIVSAS-RDKSIILWKLTKDDKAYGVAQRRLT---GHSHFVEDVV--LSSDGQFALSGSWD-GELRLWDLAAGVSTRRF  468 (694)
T ss_dssp             SEEEEEE-TTSEEEEEECCCSTTCSCEEEEEEE---CCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred             CEEEEEe-CCCcEEEEEccCCCcccccccceec---CCCCcEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCcceeEE
Confidence            3789999 99999999987643     334444   4667888998  99999999999998 9999999998776543 


Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee---eccccCCeeEEEEccCC--cEEEEeeCCCcEEEeeC
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSL  151 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~  151 (451)
                      ..|...|.+++|+|++++|++|+.|+.|++||.........   ..+|...|.+++|+|++  ..|++++.|+.|++||+
T Consensus       469 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~  548 (694)
T 3dm0_A          469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL  548 (694)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence            56889999999999999999999999999999865433222   25788999999999976  68999999999999999


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (451)
                      ++           ......+.+|...|.+++|+|++  .+|++++.||.|++||+++++.+..+.+...+.+++|+|++.
T Consensus       549 ~~-----------~~~~~~~~~h~~~v~~v~~spdg--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~  615 (694)
T 3dm0_A          549 SN-----------CKLRSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY  615 (694)
T ss_dssp             TT-----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred             CC-----------CcEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence            54           45567788999999999999998  899999999999999999999998888888999999999998


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-------------------cCCcceeEEEEec-CCEEEEEcCCCc
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------------------DHSKAVTCLAYST-GDLLISGSEDGM  291 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~-~~~l~s~~~dg~  291 (451)
                      ++++++ ++.|++||+.+...         +..+.                   .+...+++++|+| +.+|++|+.||.
T Consensus       616 ~l~~~~-~~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          616 WLCAAT-EHGIKIWDLESKSI---------VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEEEEE-TTEEEEEETTTTEE---------EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEc-CCCEEEEECCCCCC---------hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            888766 55699999987632         22211                   1223478999999 999999999999


Q ss_pred             EEEEeCC
Q 012996          292 VRVWDPI  298 (451)
Q Consensus       292 i~iwd~~  298 (451)
                      |+|||+.
T Consensus       686 i~iW~i~  692 (694)
T 3dm0_A          686 IRVWGIG  692 (694)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.6e-38  Score=289.60  Aligned_cols=289  Identities=13%  Similarity=0.075  Sum_probs=233.9

Q ss_pred             EEEeecCCCCCCeEEEECccCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee---e
Q 012996            3 LLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---S   77 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~   77 (451)
                      .+||+++ .||.|++||+.+++  .+..+..   |...|.+++  |+|+++++++++.| |.|++||+.+++....   .
T Consensus        21 ~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~   93 (372)
T 1k8k_C           21 TQIAICP-NNHEVHIYEKSGNKWVQVHELKE---HNGQVTGVD--WAPDSNRIVTCGTD-RNAYVWTLKGRTWKPTLVIL   93 (372)
T ss_dssp             SEEEEEC-SSSEEEEEEEETTEEEEEEEEEC---CSSCEEEEE--EETTTTEEEEEETT-SCEEEEEEETTEEEEEEECC
T ss_pred             CEEEEEe-CCCEEEEEeCCCCcEEeeeeecC---CCCcccEEE--EeCCCCEEEEEcCC-CeEEEEECCCCeeeeeEEee
Confidence            3688998 89999999999887  7777765   556788888  99999999999988 9999999988764322   4


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc----eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .|...|.+++|+|++++|++|+.||.|++||+..+..    ......|...|.+++|+|++++|++++.||.|++||++.
T Consensus        94 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (372)
T 1k8k_C           94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  173 (372)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence            5788999999999999999999999999999988763    233367899999999999999999999999999999753


Q ss_pred             hhhhhh-------hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEE
Q 012996          154 VFEECE-------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA  225 (451)
Q Consensus       154 ~~~~~~-------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~  225 (451)
                      ......       ........+..+..|...|.+++|++++  .+|++++.|+.|++||+++++.+..+. +...+.+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  251 (372)
T 1k8k_C          174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT  251 (372)
T ss_dssp             TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred             ccccccccccccccccchhhheEecCCCCCeEEEEEECCCC--CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence            211000       0012345667778899999999999988  899999999999999999999988887 667999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEccC--CCCCC--C---------------------CCCceee------eee-ccCCccee
Q 012996          226 LDPAEHVFYAGSRDGSIYIAALNA--ESPST--S---------------------SYGMHII------GSL-SDHSKAVT  273 (451)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~---------------------~~~~~~~------~~~-~~~~~~v~  273 (451)
                      |+|++.++++| .|+.|++|++..  +....  .                     .......      ..+ .+|...|+
T Consensus       252 ~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  330 (372)
T 1k8k_C          252 FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS  330 (372)
T ss_dssp             EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred             EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence            99999988887 899999999987  31000  0                     0000110      223 48999999


Q ss_pred             EEEEec--C---CEEEEEcCCCcEEEEeCCCCc
Q 012996          274 CLAYST--G---DLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       274 ~~~~~~--~---~~l~s~~~dg~i~iwd~~~~~  301 (451)
                      +++|++  +   .+|++|+.||.|++||+.+++
T Consensus       331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            999876  5   899999999999999987654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-37  Score=275.61  Aligned_cols=249  Identities=15%  Similarity=0.202  Sum_probs=205.3

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC--c-eeeeecCCCCeeEEEECCC--CcEEEEeccCCCEEEEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--Q-VEVKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~-~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd  108 (451)
                      +|...|.+++  |+|+|++||+++.| ++|++|++...  . ......|.++|.+++|+|+  +++|++|+.||.|++||
T Consensus         7 ~h~~~V~~~~--~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            7 AHNEMIHDAV--MDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             SCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             CCcCceEEEE--ECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            5667899999  99999999999998 99999998743  2 2344568999999999863  89999999999999999


Q ss_pred             cCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       109 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      +.+++  .+..+.+|...|.+++|+|+  +.+|++++.||.|++||+++.         .......+.+|...|.+++|+
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~---------~~~~~~~~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN---------GTTSPIIIDAHAIGVNSASWA  154 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS---------SCBCCEEEECCSSCEEEEEEC
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC---------CceeeeeeecccCccceEeec
Confidence            98874  56677889999999999997  889999999999999999652         111234567899999999999


Q ss_pred             ecC-----------CeeEEEEeeCCCcEEEEEcCCCc----eeeeee-cccceeEEEECCCC---CEEEEEeCCCcEEEE
Q 012996          185 YGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPAE---HVFYAGSRDGSIYIA  245 (451)
Q Consensus       185 ~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~  245 (451)
                      |+.           .+.+|++|+.|++|++||++++.    ....+. |...|.+++|+|++   .+|++++.|+.|++|
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence            863           12689999999999999998765    444554 78899999999984   899999999999999


Q ss_pred             EccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      |++......    .........|...|.+++|+| +.+|++++.||.|++|+..
T Consensus       235 d~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          235 TQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EeCCCCCcc----ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            998643110    011111256788999999999 9999999999999999976

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.1e-38  Score=295.49  Aligned_cols=285  Identities=13%  Similarity=0.127  Sum_probs=225.5

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc------------eeeeecCC------------CCeeEEEECC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------------VEVKSLPA------------EPIKPIAANS   90 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~------------~~~~~~~~------------~~v~~~~~~~   90 (451)
                      +...|.+++  |+|+|++||+++.| |.|+||++.++.            ......|.            ..|.+++|+|
T Consensus        27 ~~~~V~~v~--~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           27 EADIISTVE--FNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             GGGSEEEEE--ECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccCcEEEEE--ECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            457899999  99999999999998 999999998765            22334576            8899999999


Q ss_pred             CC--cEEEEeccCCCEEEEEcCCCcce---------------------------------------ee-eccccCCeeEE
Q 012996           91 HG--TYIAGGGQSGDIYMWEVASGRLL---------------------------------------KK-WHAHYRAVTCL  128 (451)
Q Consensus        91 ~~--~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~  128 (451)
                      ++  .+|++++.||.|++||+.++...                                       .. ..+|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            98  89999999999999999764432                                       12 36799999999


Q ss_pred             EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996          129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (451)
Q Consensus       129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~  208 (451)
                      +|+|++++|++| .||.|++||+.+........   ......+.+|...|.+++|+|++. .+|++++.||.|++||+++
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIV---DIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEE---ECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEEEEETTT
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeee---ecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEEEEECcC
Confidence            999999999998 79999999996411000000   000114678999999999999853 6999999999999999999


Q ss_pred             Cce----eeeee-ccc------------ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996          209 GRL----LRNIV-FPS------------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (451)
Q Consensus       209 ~~~----~~~~~-~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
                      ++.    ...+. +..            .|.+++|+|++++|++++. +.|++||++...        .++..+.+|...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--------~~~~~~~~~~~~  329 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--------RPVETYQVHEYL  329 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--------SCSCCEESCGGG
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--------cccceeeccccc
Confidence            886    55555 333            8999999999999999999 999999998732        345566666532


Q ss_pred             ---------------eeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---------------------------
Q 012996          272 ---------------VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---------------------------  308 (451)
Q Consensus       272 ---------------v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------------  308 (451)
                                     +..++|+| +.+|++|+.||.|++||+.+++.+. +..                           
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEI  408 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccc
Confidence                           33499999 9999999999999999999987763 222                           


Q ss_pred             ------CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          309 ------AKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       309 ------~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                            +...|..++|+|++.+||+++.++ +.+|.
T Consensus       409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          409 SVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             EGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             cccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence                  234689999999999999998876 55554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=283.83  Aligned_cols=295  Identities=15%  Similarity=0.189  Sum_probs=236.5

Q ss_pred             EECccCceeeeeecCCCCCCceEEecceEeec---cCcccCCCCCCccEEEEECCC-Ccee--eeecCCCCeeEEEECCC
Q 012996           18 WDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSK-PQVE--VKSLPAEPIKPIAANSH   91 (451)
Q Consensus        18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~d~g~i~vw~~~~-~~~~--~~~~~~~~v~~~~~~~~   91 (451)
                      |+....+.+.   ...+|...|.+++  |+|+   |+++++++.| |.|++||+.+ +...  ....|...|.+++|+|+
T Consensus        24 ~~~~~~~~~~---~~~~h~~~v~~~~--~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~   97 (368)
T 3mmy_A           24 DNHNPMKDIE---VTSSPDDSIGCLS--FSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD   97 (368)
T ss_dssp             CSSCTTCCEE---CSSCCSSCEEEEE--ECCTTSSSEEEEEEETT-SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT
T ss_pred             CCCCCcceeE---eccCCCCceEEEE--EcCCCCCceEEEEECCC-CcEEEEEcCCCCceeEEEeccccCCEEEEEECcC
Confidence            4444444444   4446778899999  9999   6999999988 9999999986 4432  34558899999999999


Q ss_pred             CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE--ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996           92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  169 (451)
                      +++|++|+.||.|++||+.+++.+. +..|...|.+++|  +|++.+|++++.||.|++||+++           ...+.
T Consensus        98 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----------~~~~~  165 (368)
T 3mmy_A           98 GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS-----------SNPMM  165 (368)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC-----------SSCSE
T ss_pred             CCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC-----------CcEEE
Confidence            9999999999999999999888766 5579999999999  88999999999999999999965           33444


Q ss_pred             cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCE----EEEEeCCCcE
Q 012996          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHV----FYAGSRDGSI  242 (451)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~----l~~~~~dg~i  242 (451)
                      .+..|. .+.++.+.  +  ..+++++.++.+.+|+++.........   ....+.++++.++...    +++++.||.|
T Consensus       166 ~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          166 VLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             EEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             EEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            455444 45555544  3  578889999999999998765433322   3445566666554443    9999999999


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCc------------ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                      ++||++....      ......+.+|..            .|++++|+| +.+|++|+.||.|++||+.+++++..+..|
T Consensus       241 ~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (368)
T 3mmy_A          241 AIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL  314 (368)
T ss_dssp             EEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             EEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence            9999987631      123445556655            799999999 999999999999999999999999999999


Q ss_pred             CCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ..+|++++|+|++++|++++.|+..+.|++..
T Consensus       315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          315 DQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             SSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CCCceEEEECCCCCeEEEEecccccccccccC
Confidence            99999999999999999999999877777553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-37  Score=286.88  Aligned_cols=269  Identities=16%  Similarity=0.241  Sum_probs=222.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCceeeeecC--
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLP--   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~--   79 (451)
                      .+||+|+ .||.|+|||+.+++....+.. .+|...|.+++  |+| ++.++++++.| +.|++||+.+........+  
T Consensus        87 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~  161 (383)
T 3ei3_B           87 TTVAVGS-KGGDIILWDYDVQNKTSFIQG-MGPGDAITGMK--FNQFNTNQLFVSSIR-GATTLRDFSGSVIQVFAKTDS  161 (383)
T ss_dssp             TEEEEEE-BTSCEEEEETTSTTCEEEECC-CSTTCBEEEEE--EETTEEEEEEEEETT-TEEEEEETTSCEEEEEECCCC
T ss_pred             CEEEEEc-CCCeEEEEeCCCcccceeeec-CCcCCceeEEE--eCCCCCCEEEEEeCC-CEEEEEECCCCceEEEeccCC
Confidence            4789999 999999999998888776643 34778899999  999 78999999988 9999999997655444433  


Q ss_pred             -CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhh
Q 012996           80 -AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        80 -~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                       ...|.+++|+|++++|++|+.||.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++... 
T Consensus       162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  239 (383)
T 3ei3_B          162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-  239 (383)
T ss_dssp             SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-
T ss_pred             CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-
Confidence             478999999999999999999999999998 6788889999999999999999998 999999999999999965211 


Q ss_pred             hhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cc-----------------
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP-----------------  218 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-----------------  218 (451)
                            ....+..+ +|...|.+++|++ ++  .+|++++.|+.|++||+++++....+. +.                 
T Consensus       240 ------~~~~~~~~-~~~~~v~~~~~s~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  310 (383)
T 3ei3_B          240 ------KNSYIAEM-PHEKPVNAAYFNPTDS--TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM  310 (383)
T ss_dssp             ------TTCEEEEE-ECSSCEEEEEECTTTS--CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred             ------ccceEEEe-cCCCceEEEEEcCCCC--CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence                  12334444 6999999999999 87  899999999999999999887765554 21                 


Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--CCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~l~s~~~dg~i~iw  295 (451)
                      ..+..++++|++++  +|+.||.|++||+.++         ..+..+.+  |...+.+++|+| +.+|++|+ ||.|++|
T Consensus       311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW  378 (383)
T ss_dssp             SSEEEEECBCCTTT--CTTCCCCEEEEETTTC---------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             CCceEEEecCCccc--ccCCCCeEEEEecCCC---------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence            23444666666666  6778999999999886         44566665  567888889999 99999997 9999999


Q ss_pred             eCCC
Q 012996          296 DPIT  299 (451)
Q Consensus       296 d~~~  299 (451)
                      |+.+
T Consensus       379 ~~~~  382 (383)
T 3ei3_B          379 NRED  382 (383)
T ss_dssp             ECC-
T ss_pred             ecCC
Confidence            9864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-37  Score=283.46  Aligned_cols=261  Identities=14%  Similarity=0.198  Sum_probs=221.7

Q ss_pred             eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEE
Q 012996           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI  148 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~v  148 (451)
                      ....|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            34568899999999999999999999999999999876    45667789999999999999  6999999999999999


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------------
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------------  216 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------  216 (451)
                      ||+.+......  .........+..|...|.+++|+++..+.++++++.||.|++||+++++.+..+.            
T Consensus        86 wd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           86 WEEDPDQEECS--GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEECTTSCTTS--SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EecCCCccccc--ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99966322110  0111456777889999999999998212899999999999999999887554432            


Q ss_pred             --cccceeEEEECCC---CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C----CEEEEE
Q 012996          217 --FPSVIDAIALDPA---EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISG  286 (451)
Q Consensus       217 --~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~l~s~  286 (451)
                        +...+.+++|+|+   +..+++++.++.+.+|+.....       ...+..+.+|...|++++|+| +    .+|++|
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence              4567899999997   9999999999999888776653       245677889999999999999 6    799999


Q ss_pred             cCCCcEEEEeCCCC----------------------------------------------ceEEEeecCCCCeeEEEEEe
Q 012996          287 SEDGMVRVWDPITH----------------------------------------------NIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       287 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~~s~  320 (451)
                      +.||.|++||+.++                                              +++..+.+|.++|++++|+|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence            99999999999875                                              67778889999999999999


Q ss_pred             cCceeeeccCCCCccccccCCCCC
Q 012996          321 RPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       321 ~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      ++++|++++.||.|++|++.....
T Consensus       317 ~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          317 TGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             SSCCEEEEETTSCEEEEEECTTSC
T ss_pred             CCCEEEEecCCCcEEEEecCcCcc
Confidence            999999999999999999886543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=286.27  Aligned_cols=320  Identities=15%  Similarity=0.136  Sum_probs=230.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecC----------CCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSC----------ASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKP   71 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~   71 (451)
                      .+||+|+ .||.|++||+.++.....+...          .+|...|.+++  |+| ++.++++++.+ |.|++||+.++
T Consensus        57 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~  132 (408)
T 4a11_B           57 RYMLSGG-SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ--WYPHDTGMFTSSSFD-KTLKVWDTNTL  132 (408)
T ss_dssp             CEEEEEE-TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE--ECTTCTTCEEEEETT-SEEEEEETTTT
T ss_pred             CEEEEEc-CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE--EccCCCcEEEEEeCC-CeEEEeeCCCC
Confidence            4789999 9999999999988776655421          24778899999  999 77788888887 99999999998


Q ss_pred             ceeeeecCCCCeeEEEECCC---CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEE
Q 012996           72 QVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVR  147 (451)
Q Consensus        72 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~  147 (451)
                      .......+...+.++.|+|.   +.++++|+.+|.|++||+.+++.+..+..|...|.+++|+|++. +|++++.||.|+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          133 QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence            88777778899999999984   45999999999999999999999999999999999999999988 589999999999


Q ss_pred             EeeCcchhhhhhhh-----cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-----
Q 012996          148 IWSLLTVFEECESQ-----RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----  217 (451)
Q Consensus       148 vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----  217 (451)
                      +||+++........     ............|...|.+++|++++  .+|++++.||.|++||+.+++.......     
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  290 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN  290 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCccceecccccccc
Confidence            99997642111000     01112223346799999999999988  8999999999999999998876554321     


Q ss_pred             -ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996          218 -PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (451)
Q Consensus       218 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw  295 (451)
                       ...+........+..+++++.++.|++||+.+.         ..+..+.+|...|++++|+| +.+|++|+.||.|++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  361 (408)
T 4a11_B          291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW  361 (408)
T ss_dssp             CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ccccceeEEecCCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence             122223333345667777888999999999886         56778889999999999999 9999999999999999


Q ss_pred             eCCCCceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccC
Q 012996          296 DPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~  340 (451)
                      |+.+++++.....+...   ..+.| ....+.+.+.++.+++|+..
T Consensus       362 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          362 VPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EECC------------------------------------------
T ss_pred             eCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence            99999887766543222   23343 33455667788999999854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-37  Score=288.18  Aligned_cols=277  Identities=14%  Similarity=0.173  Sum_probs=229.1

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCc-----eeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCC-------
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG-------  112 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------  112 (451)
                      ++|+...+++.+..+|.|+||++....     ......|...|.+++|+| ++++|++|+.||.|++||+.++       
T Consensus        42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~  121 (402)
T 2aq5_A           42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR  121 (402)
T ss_dssp             ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC
T ss_pred             ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC
Confidence            777776665544434999999996542     223345889999999999 9999999999999999999988       


Q ss_pred             cceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc--cCCcCceeEEEEeecCCe
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~  189 (451)
                      +.+..+.+|...|.+++|+|++ .+|++++.||.|++||+.+           ...+..+  ..|...|.+++|++++  
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~--  188 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-----------GAAVLTLGPDVHPDTIYSVDWSRDG--  188 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-----------TEEEEEECTTTCCSCEEEEEECTTS--
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-----------CCccEEEecCCCCCceEEEEECCCC--
Confidence            5678889999999999999998 6999999999999999954           3455566  7899999999999988  


Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeee-e-cccc-eeEEEECCCCCEEEEE---eCCCcEEEEEccCCCCCCCCCCceeee
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNI-V-FPSV-IDAIALDPAEHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIG  263 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (451)
                      .+|++++.||.|++||+++++.+..+ . +... +.+++|+|++.+|++|   +.|+.|++||++....       ....
T Consensus       189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-------~~~~  261 (402)
T 2aq5_A          189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-------PLSL  261 (402)
T ss_dssp             SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-------CSEE
T ss_pred             CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-------CceE
Confidence            89999999999999999999998887 3 5444 8999999999999999   7999999999988642       1111


Q ss_pred             eeccCCcceeEEEEec-CCEEE-EEcCCCcEEEEeCCCCce-EEEeec--CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          264 SLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       264 ~~~~~~~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ....|...+.+++|+| +.+|+ +|+.||.|++||+.+++. +..+..  |.++|.+++|+|++.+++++  ++.+++|+
T Consensus       262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~~~  339 (402)
T 2aq5_A          262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARFYK  339 (402)
T ss_dssp             EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEEEE
T ss_pred             EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec--ceeEEEEE
Confidence            2235778899999999 88886 566799999999999884 555554  45899999999999998764  56999999


Q ss_pred             cCCCCC
Q 012996          339 RHGSQL  344 (451)
Q Consensus       339 ~~~~~~  344 (451)
                      +....+
T Consensus       340 l~~~~~  345 (402)
T 2aq5_A          340 LHERKC  345 (402)
T ss_dssp             EETTEE
T ss_pred             cCCCcE
Confidence            886543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=271.76  Aligned_cols=266  Identities=17%  Similarity=0.195  Sum_probs=231.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----eeeeecC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLP   79 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~~~~~   79 (451)
                      +|++++ .||.|++||+.+++....+..|   ...+.+++  |+|+++++++++.+ |.|++|++....    ......|
T Consensus        31 ~l~s~~-~dg~v~vw~~~~~~~~~~~~~~---~~~v~~~~--~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~~~~  103 (313)
T 3odt_A           31 KVASVS-RDGTVRLWSKDDQWLGTVVYTG---QGFLNSVC--YDSEKELLLFGGKD-TMINGVPLFATSGEDPLYTLIGH  103 (313)
T ss_dssp             EEEEEE-TTSEEEEEEESSSEEEEEEEEC---SSCEEEEE--EETTTTEEEEEETT-SCEEEEETTCCTTSCC-CEECCC
T ss_pred             EEEEEE-cCCcEEEEECCCCEEEEEeecC---CccEEEEE--ECCCCCEEEEecCC-CeEEEEEeeecCCCCcccchhhc
Confidence            688999 9999999999999888887765   56788888  99999999999998 999999987543    3344558


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      ...|.+++|  +++++++++.||.|++||  .++....+..|...+.++.|+| ++.++++++.||.|++||...     
T Consensus       104 ~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----  174 (313)
T 3odt_A          104 QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-----  174 (313)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-----
T ss_pred             ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-----
Confidence            899999999  578999999999999999  6778888899999999999998 999999999999999999632     


Q ss_pred             hhhcccccceecccC-CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEE
Q 012996          159 ESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~  236 (451)
                              ....+.. |...+.+++|++++  . +++++.||.|++||+++++.+..+. |...|.+++|+|++ .|+++
T Consensus       175 --------~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~  242 (313)
T 3odt_A          175 --------VIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC  242 (313)
T ss_dssp             --------EEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred             --------eEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence                    3444555 89999999999997  5 9999999999999999999998887 88999999999999 68999


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      +.||.|++||+.+.         ..+..+..|...|++++|+| +. +++++.||.|++||+.+++.+....
T Consensus       243 ~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          243 GEDRTVRIWSKENG---------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             ETTSEEEEECTTTC---------CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             ecCCEEEEEECCCC---------ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            99999999999886         45677888999999999999 66 7789999999999999887766544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.5e-38  Score=292.66  Aligned_cols=275  Identities=16%  Similarity=0.205  Sum_probs=215.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCceeeeec---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSL---   78 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~---   78 (451)
                      .+||+|+ .||.|+|||+.+++....+. ..+|...|.+++  |+| ++.+|++++.| |+|++||+++........   
T Consensus       133 ~~lasGs-~dg~i~lWd~~~~~~~~~~~-~~gH~~~V~~l~--f~p~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~  207 (435)
T 4e54_B          133 STVAVGS-KGGDIMLWNFGIKDKPTFIK-GIGAGGSITGLK--FNPLNTNQFYASSME-GTTRLQDFKGNILRVFASSDT  207 (435)
T ss_dssp             TCEEEEE-TTSCEEEECSSCCSCCEEEC-CCSSSCCCCEEE--ECSSCTTEEEEECSS-SCEEEEETTSCEEEEEECCSS
T ss_pred             CEEEEEe-CCCEEEEEECCCCCceeEEE-ccCCCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEeeccCCceeEEeccCC
Confidence            3689999 99999999998876554432 335667888888  998 67899999888 999999998776554433   


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      +...+.+++|+|++.+|++|+.||.|++||+. ++.+..+.+|...|.+++|+|++. +|++|+.|+.|++||+++..  
T Consensus       208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~--  284 (435)
T 4e54_B          208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR--  284 (435)
T ss_dssp             CSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC--
T ss_pred             CCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc--
Confidence            24468899999999999999999999999985 567778899999999999999875 78899999999999996631  


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cc------cceeEEEECCCC
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP------SVIDAIALDPAE  230 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~------~~i~~~~~~~~~  230 (451)
                            .........+|...|++++|+|++  .+|++++.||.|++||+.++.....+. +.      ..+....|+|++
T Consensus       285 ------~~~~~~~~~~h~~~v~~~~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
T 4e54_B          285 ------GKASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY  356 (435)
T ss_dssp             ------SSSCCSBCCBCSSCEEECCBCTTS--SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred             ------ccceEEEeeeccccccceeECCCC--CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence                  122233456799999999999988  899999999999999999887766553 21      123455677777


Q ss_pred             CEEEEEe------------CCCcEEEEEccCCCCCCCCCCceeeee-eccCCcceeEE-EEec-CCEEEEEcCCCcEEEE
Q 012996          231 HVFYAGS------------RDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCL-AYST-GDLLISGSEDGMVRVW  295 (451)
Q Consensus       231 ~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~-~~~l~s~~~dg~i~iw  295 (451)
                      ..++++.            .++.|++||..++.         .+.. ..+|...|.++ +|+| +.+|++|+ |+.|+||
T Consensus       357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---------~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---------MMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW  426 (435)
T ss_dssp             SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---------EEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred             CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---------EEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence            7777664            23579999998863         3333 45688889887 6999 99998876 8899999


Q ss_pred             eCCCCceE
Q 012996          296 DPITHNIV  303 (451)
Q Consensus       296 d~~~~~~~  303 (451)
                      |+.+++..
T Consensus       427 ~~~~gk~r  434 (435)
T 4e54_B          427 SQQEARTR  434 (435)
T ss_dssp             CCC-----
T ss_pred             ECCcCeee
Confidence            99988653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-36  Score=285.17  Aligned_cols=283  Identities=17%  Similarity=0.275  Sum_probs=245.1

Q ss_pred             eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD  103 (451)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~  103 (451)
                      ....+.+|...+  +.+    +.++++++++++.| |.|++||+.+++.... ..|...|.+++|+  ++++++|+.||.
T Consensus       110 ~~~~l~~h~~~v--~~~----~~~~g~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          110 SPKVLKGHDDHV--ITC----LQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             CCEEEECSTTSC--EEE----EEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             eeEEecccCCCc--EEE----EEEcCCEEEEEECC-CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            344555554322  343    56679999999998 9999999998876544 4588999999997  679999999999


Q ss_pred             EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                      |++||+.+++.+..+.+|...|.++.|+  ++.+++|+.||.|++||+.+           ...+..+.+|...|.++.+
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-----------~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-----------GQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-----------CCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-----------CcEEEEEcCCcccEEEEEE
Confidence            9999999999999999999999999996  56899999999999999954           4456778899999999998


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (451)
                        ++  .++++++.||.|++||+++++.+..+. +...+.+++|  ++.++++|+.||.|++||+++.         ..+
T Consensus       248 --~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---------~~~  312 (445)
T 2ovr_B          248 --DG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---------NCI  312 (445)
T ss_dssp             --CS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---------CEE
T ss_pred             --CC--CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---------CEE
Confidence              44  789999999999999999999988887 7889999999  8899999999999999999886         456


Q ss_pred             eeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          263 GSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       263 ~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ..+.+|...+.++.++ +++|++|+.||.|++||+.+++++..+..   |..+|++++|+  +.+|++++.||.|++|++
T Consensus       313 ~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          313 HTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             EEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             EEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            7788999999998876 68999999999999999999999999986   78899999995  689999999999999999


Q ss_pred             CCCCCCCc
Q 012996          340 HGSQLPPP  347 (451)
Q Consensus       340 ~~~~~~~~  347 (451)
                      ..+.....
T Consensus       390 ~~~~~~~~  397 (445)
T 2ovr_B          390 KTGEFIRN  397 (445)
T ss_dssp             TTCCEEEE
T ss_pred             CCCceeee
Confidence            87655443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.5e-38  Score=280.02  Aligned_cols=249  Identities=16%  Similarity=0.194  Sum_probs=204.0

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce---eeeecCCCCeeEEEECC--CCcEEEEeccCCCEEEEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE  108 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~---~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd  108 (451)
                      +|...|.+++  |+|+|++||+++.| ++|++||+.++..   .....|..+|.+++|+|  ++++|++|+.|+.|++||
T Consensus        11 ~H~~~V~~v~--~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           11 SHEDMIHDAQ--MDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ---CCEEEEE--ECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             cccCeEEEee--EcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            5678899999  99999999999998 9999999987643   23456899999999986  489999999999999999


Q ss_pred             cCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       109 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      +.++.  ....+.+|...|.+++|+|+  +.+|++|+.||.|++||++..        ........+.+|...|.+++|+
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~--------~~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE--------GQWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS--------SCEEECCBTTSSSSCBCCCEEC
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC--------CCcceeeeeccccCCcceEEEc
Confidence            98874  56677899999999999997  789999999999999998541        0112245567899999999999


Q ss_pred             ecCC---------------eeEEEEeeCCCcEEEEEcCCC---ceeeeee-cccceeEEEECCCC----CEEEEEeCCCc
Q 012996          185 YGGV---------------SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPSVIDAIALDPAE----HVFYAGSRDGS  241 (451)
Q Consensus       185 ~~~~---------------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~  241 (451)
                      |+..               +.+|++++.|+.|++||++..   +....+. |...|.+++|+|++    .+|++++.||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence            8631               268999999999999999755   3445554 78899999999986    88999999999


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      |++|++.......     .....+..|...|.+++|+| +.+|++++.||+|++|+..
T Consensus       240 v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          240 VFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999997632100     11223456889999999999 9999999999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-38  Score=290.24  Aligned_cols=252  Identities=14%  Similarity=0.152  Sum_probs=208.8

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC--cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcch
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  154 (451)
                      ..+.++|.+++|+|++++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            346689999999999999999999999999999988  788889999999999999999999999999999999999652


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce---eeeee--cccceeEEEECCC
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL---LRNIV--FPSVIDAIALDPA  229 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~i~~~~~~~~  229 (451)
                      .        .......+..|...|.+++|++++  .+|++++.|+.|++||+++++.   ...+.  |...|.+++|+|+
T Consensus        88 ~--------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           88 G--------TWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             ---------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             C--------ceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            1        133456678899999999999988  8999999999999999998863   45554  7889999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCC---------CCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSS---------YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +++|++++.||.|++||+.........         .....+..+ +|...|++++|+| +.+|++++.||.|++||+.+
T Consensus       158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            999999999999999999643211100         112445556 8999999999999 99999999999999999999


Q ss_pred             Cce----EEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          300 HNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       300 ~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ++.    +..+..|..+|.+++|+|++++|++++.++.+.+|..
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            988    8889999999999999999999999987777744443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=269.73  Aligned_cols=275  Identities=18%  Similarity=0.287  Sum_probs=231.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+||+|.  |++|+|||+.+|+.+..+..+ +|...|.+++  |+|+++++++++.| |+|++|++.+++.... ..|..
T Consensus        37 ~~lAvg~--D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~--~~~~~~~l~sgs~D-g~v~iw~~~~~~~~~~~~~h~~  110 (318)
T 4ggc_A           37 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA  110 (318)
T ss_dssp             SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCeEEEEE--ECCCCCEEEEEECC-CcEEEeecCCceeEEEecCccc
Confidence            3577765  899999999999999887654 4778899999  99999999999998 9999999998876544 44666


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      .+.++.  +++..+++|+.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.||.|++||++++..    
T Consensus       111 ~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----  184 (318)
T 4ggc_A          111 RVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG----  184 (318)
T ss_dssp             CEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT----
T ss_pred             eEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc----
Confidence            666554  45789999999999999998776 44567889999999999999999999999999999999976321    


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCee-EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe--
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS--  237 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--  237 (451)
                         ..........|...|.++.+++.+..- .+++++.++.|++||...........+...+..++|+|.+..+++++  
T Consensus       185 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          185 ---GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             ---BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             ---cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence               222345556788899999998876422 23567788999999999999888888899999999999999887764  


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  301 (451)
                      .|+.|++||+.+.         .++..+.+|...|++++|+| +.+|++|+.||+|+|||+....
T Consensus       262 ~d~~i~iwd~~~~---------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          262 AQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            7999999999886         56788999999999999999 9999999999999999997654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=282.66  Aligned_cols=280  Identities=13%  Similarity=0.206  Sum_probs=226.9

Q ss_pred             EEEeecCCC---CCCeEEEECccCceeeeeecCCCCCCceEEecceEeec---cCcccCCCCCCccEEEEECCCCc--ee
Q 012996            3 LLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSKPQ--VE   74 (451)
Q Consensus         3 ~~l~s~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~d~g~i~vw~~~~~~--~~   74 (451)
                      .++++|+ .   ||.|+|||+.+++.......  .|...|.+++  |+|+   +.++++++.+ |.|++||+.++.  ..
T Consensus        32 ~l~~~~s-~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~--~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~  105 (357)
T 3i2n_A           32 KFVTMGN-FARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGT--FGATSLQQRYLATGDFG-GNLHIWNLEAPEMPVY  105 (357)
T ss_dssp             EEEEEEC---CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEE--CTTCCTTTCCEEEEETT-SCEEEECTTSCSSCSE
T ss_pred             eEEEecC-ccCCCcEEEEEeCCCCcccceeee--cccCcEEEEE--EcCCCCCCceEEEecCC-CeEEEEeCCCCCccEE
Confidence            4677887 6   99999999998887644332  3567889998  9998   6999999988 999999999776  33


Q ss_pred             eeecCCCCeeEEE------ECCCCcEEEEeccCCCEEEEEcCCCc-ceeeeccccC----CeeEEE----EccCCcEEEE
Q 012996           75 VKSLPAEPIKPIA------ANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYR----AVTCLV----FSEDGSFLIS  139 (451)
Q Consensus        75 ~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~s  139 (451)
                      ....|...|.+++      |+|++++|++|+.||.|++||+.+++ .+..+..|.+    .|.++.    |+|++++|++
T Consensus       106 ~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~  185 (357)
T 3i2n_A          106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA  185 (357)
T ss_dssp             EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred             EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence            4456889999995      57899999999999999999999887 6777766655    889998    6789999999


Q ss_pred             eeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee---cCCeeEEEEeeCCCcEEEEEcCCCceeeee-
Q 012996          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGVSATIVSASEDRTCKVWSLLKGRLLRNI-  215 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  215 (451)
                      ++.||.|++||+++.           .. .....|...|.+++|+|   ++  .++++++.||.|++||+++++....+ 
T Consensus       186 ~~~d~~i~i~d~~~~-----------~~-~~~~~~~~~v~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          186 GYDNGDIKLFDLRNM-----------AL-RWETNIKNGVCSLEFDRKDISM--NKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             EETTSEEEEEETTTT-----------EE-EEEEECSSCEEEEEESCSSSSC--CEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             EccCCeEEEEECccC-----------ce-eeecCCCCceEEEEcCCCCCCC--CEEEEECCCCeEEEEeCcCCCccccee
Confidence            999999999999652           12 33456889999999999   66  89999999999999999887665444 


Q ss_pred             -----ecccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCC----------CCCceeeeeeccCCcceeEEEEec
Q 012996          216 -----VFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTS----------SYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       216 -----~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                           .+...|.+++|+|++. +|++++.||.|++||++.......          ......+..+.+|...|++++|+|
T Consensus       252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred             eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence                 3788999999999998 899999999999999987543210          011246778889999999999999


Q ss_pred             -CCEEE-EEcCCCcEEEEeCCCCce
Q 012996          280 -GDLLI-SGSEDGMVRVWDPITHNI  302 (451)
Q Consensus       280 -~~~l~-s~~~dg~i~iwd~~~~~~  302 (451)
                       +.+|+ +++.||.|++||+.+.+.
T Consensus       332 ~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          332 DKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             SSTTEEEEEETTSEEEEEEECC---
T ss_pred             CCCeEEEEecCCCcEEEEECCCccc
Confidence             88888 899999999999987654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=280.38  Aligned_cols=254  Identities=18%  Similarity=0.177  Sum_probs=216.6

Q ss_pred             eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEee
Q 012996           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWS  150 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd  150 (451)
                      ....|.+.|.+++|+|++++|++|+.||.|++||+.  +++.+..+.+|...|++++|+++  +++|++++.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            345688999999999999999999999999999998  66777888999999999999976  89999999999999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee--e-ecccceeEEEEC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN--I-VFPSVIDAIALD  227 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~-~~~~~i~~~~~~  227 (451)
                      +.+         ........+..|...|.+++|+++..+.++++++.|+.|++||++++.....  + .+...|.+++|+
T Consensus        86 ~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           86 EEN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             EET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             cCC---------CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            965         2223566778899999999999982228999999999999999988743322  2 378899999999


Q ss_pred             C-------------CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec----CCEEEEEcCCC
Q 012996          228 P-------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDG  290 (451)
Q Consensus       228 ~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~s~~~dg  290 (451)
                      |             ++.+|++++.||.|++||++.....     ......+.+|...|++++|+|    +.+|++++.||
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            9             6999999999999999999875421     245567889999999999999    37899999999


Q ss_pred             cEEEEeCCCCc-----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          291 MVRVWDPITHN-----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       291 ~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      .|++||+.++.     .+.....|...|++++|+|++++|++++.||.+++|++...
T Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            99999998864     22223347889999999999999999999999999998743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.2e-36  Score=275.01  Aligned_cols=271  Identities=13%  Similarity=0.093  Sum_probs=203.6

Q ss_pred             EEEeecCCCCC-------CeEEEECccCceeee-----e--ecCCCCCCceEEecceEee---------ccCcccCCCCC
Q 012996            3 LLIASSSVADT-------GIGCWDLESGAEQLR-----Y--KSCASPPHGLACVGQRFLA---------SSQLREQPSAS   59 (451)
Q Consensus         3 ~~l~s~~~~dg-------~i~vwd~~~~~~~~~-----~--~~~~~~~~~v~~~~~~~~~---------~~~~l~~~~~d   59 (451)
                      .+||+|+ .|.       .|++|++..+.....     .  .....+...+.+++  +..         ++..+++++.+
T Consensus        27 ~~l~sGG-g~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~--~~~~~~~~g~~~~~~~l~s~~~d  103 (365)
T 4h5i_A           27 TLLVAGG-GGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAID--ASKGIILVGCNENSTKITQGKGN  103 (365)
T ss_dssp             EEEEEEE-CCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEE--EETTEEEEECCCCHHHHHHTSCC
T ss_pred             cEEEEEC-CCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEE--eCCCEEEEEECCCccEEEEecCC
Confidence            4678876 433       499999875543210     0  01223445555544  322         23344455555


Q ss_pred             CccEEEEECCCCceeee----------ecCCCCeeEEEECCCCcEEEE--eccCCCEEEEEcCCCcceeeeccccCCeeE
Q 012996           60 SGSILYWSWSKPQVEVK----------SLPAEPIKPIAANSHGTYIAG--GGQSGDIYMWEVASGRLLKKWHAHYRAVTC  127 (451)
Q Consensus        60 ~g~i~vw~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  127 (451)
                       +.+++|++........          ..+...+.+++|+|||+++++  ++.|+.|+|||+.+++++..+. |.+.|.+
T Consensus       104 -~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~  181 (365)
T 4h5i_A          104 -KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKD  181 (365)
T ss_dssp             -CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred             -CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEE
Confidence             8999999875442211          113456899999999999765  4578999999999999988885 7788999


Q ss_pred             EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC----cEEE
Q 012996          128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKV  203 (451)
Q Consensus       128 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~----~i~i  203 (451)
                      ++|+|||++|++++.+ .+.+|+..+         ...........|...|.+++|+|++  ..+++++.|+    .+++
T Consensus       182 v~fspdg~~l~s~s~~-~~~~~~~~~---------~~~~~~~~~~~~~~~v~~v~fspdg--~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          182 LHFSTDGKVVAYITGS-SLEVISTVT---------GSCIARKTDFDKNWSLSKINFIADD--TVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EEECTTSSEEEEECSS-CEEEEETTT---------CCEEEEECCCCTTEEEEEEEEEETT--EEEEEEEESSSCCEEEEE
T ss_pred             EEEccCCceEEeccce-eEEEEEecc---------CcceeeeecCCCCCCEEEEEEcCCC--CEEEEEecCCcceeEEee
Confidence            9999999999999866 566666543         2222334566789999999999998  8999998887    6888


Q ss_pred             EEcCCCcee----eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee-eccCCcceeEEEE
Q 012996          204 WSLLKGRLL----RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAY  277 (451)
Q Consensus       204 wd~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~  277 (451)
                      |++......    ..+. +...|++++|+|++++|++|+.|+.|++||+.+.         +++.. +.+|...|++++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEEE
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---------cEEEEecCcccCCEEEEEE
Confidence            998766432    2222 6778999999999999999999999999999886         45555 5789999999999


Q ss_pred             ec-CCEEEEEcCCCcEEEEeCCC
Q 012996          278 ST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       278 ~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +| +.+|++||.|++|+|||+..
T Consensus       321 Spdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCC
Confidence            99 99999999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=294.69  Aligned_cols=270  Identities=13%  Similarity=0.033  Sum_probs=204.4

Q ss_pred             CCceEEecceEeecc---------CcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996           36 PHGLACVGQRFLASS---------QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~---------~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  106 (451)
                      ...|.+++  |+|++         ++||+++.+ +..                      -..+|+++.+++++.|+.|+|
T Consensus       133 ~~~V~sv~--w~p~~~~~~~~~~~~~LAv~~~~-~~~----------------------~~~~~~~~~laS~s~D~tI~i  187 (524)
T 2j04_B          133 GGLVTDIA--WLNIEENTDIGKDIQYLAVAVSQ-YMD----------------------EPLNEHLEMFDKEKHSSCIQI  187 (524)
T ss_dssp             CC--CCCS--CEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEE
T ss_pred             CCceeEEE--ecccCCCCccCcCCeEEEEEEec-ccC----------------------CccchhhhhhccCCCCceEEE
Confidence            35677777  99987         788887765 210                      013789999999999999999


Q ss_pred             EEcCCCcce----eeeccccCCeeEEEEccC------CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC
Q 012996          107 WEVASGRLL----KKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (451)
Q Consensus       107 wd~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (451)
                      ||+.+++..    ..+..|.+.|.+++|+|+      +.+|++++.||+|++||+...............+...+.+|..
T Consensus       188 Wd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~  267 (524)
T 2j04_B          188 FKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS  267 (524)
T ss_dssp             EEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred             EEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence            999887653    345678899999999996      5799999999999999996532110000001123346788999


Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEE--EECCCC-CEEEEEeCCCcEEEEEccCCC
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAI--ALDPAE-HVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      .|++++|+++   ..|++|+.||+|++||++++. +...+. |...|.++  +|+|++ .+|++|+.|++|++||+++. 
T Consensus       268 ~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~-  343 (524)
T 2j04_B          268 LITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI-  343 (524)
T ss_dssp             CEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH-
T ss_pred             CEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC-
Confidence            9999999875   479999999999999998764 334444 88899999  578887 89999999999999999875 


Q ss_pred             CCCCCCCceeeeeeccCCc--ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996          252 PSTSSYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (451)
                              .....+.+|..  .|.+++|+| +..|++++.|++|++||++++.++.++.+|.++|++++|+|++++|++|
T Consensus       344 --------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sg  415 (524)
T 2j04_B          344 --------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAG  415 (524)
T ss_dssp             --------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEE
T ss_pred             --------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEE
Confidence                    33444555643  588999999 9999999999999999999999989999999999999999999999999


Q ss_pred             cCCCCccccccCCC
Q 012996          329 SFSNPHTSSRRHGS  342 (451)
Q Consensus       329 s~d~~i~iw~~~~~  342 (451)
                      +.||+|++|+....
T Consensus       416 s~Dgtv~lwd~~~~  429 (524)
T 2j04_B          416 SADGSLIITNAARR  429 (524)
T ss_dssp             ETTTEEECCBSCSS
T ss_pred             ECCCEEEEEechHh
Confidence            99999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6e-36  Score=280.61  Aligned_cols=286  Identities=20%  Similarity=0.333  Sum_probs=226.3

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+|++|+ .||.|++||+.+++....+.+   |...|.++.  |  +++++++++.| |.|++||+.+++.... ..|..
T Consensus       144 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~--~--~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~  214 (435)
T 1p22_A          144 QKIVSGL-RDNTIKIWDKNTLECKRILTG---HTGSVLCLQ--Y--DERVIITGSSD-STVRVWDVNTGEMLNTLIHHCE  214 (435)
T ss_dssp             SEEEEEE-SSSCEEEEESSSCCEEEEECC---CSSCEEEEE--C--CSSEEEEEETT-SCEEEEESSSCCEEEEECCCCS
T ss_pred             CEEEEEe-CCCeEEEEeCCCCeEEEEEcC---CCCcEEEEE--E--CCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCC
Confidence            3688999 999999999999999988875   446788877  6  88999999988 9999999998876544 45788


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce---eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL---KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      .|.+++|+  +.++++|+.||.|++||+.++...   ..+.+|...|.+++|  ++++|++|+.||.|++||+++     
T Consensus       215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-----  285 (435)
T 1p22_A          215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-----  285 (435)
T ss_dssp             CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-----
T ss_pred             cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-----
Confidence            99999997  459999999999999999988766   667899999999999  588999999999999999954     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (451)
                            ...+..+.+|...|.++.+.  +  .++++|+.||.|++||+++++.+..+. |...|.+++|  ++.+|++|+
T Consensus       286 ------~~~~~~~~~~~~~v~~~~~~--~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~  353 (435)
T 1p22_A          286 ------CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA  353 (435)
T ss_dssp             ------CCEEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             ------CcEEEEEcCCCCcEEEEEeC--C--CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence                  45677788999999999883  4  799999999999999999999988887 8889999999  788999999


Q ss_pred             CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEE
Q 012996          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL  317 (451)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  317 (451)
                      .||.|++||+..............+..+.+|...|++++|+ +.+|++|+.||.|++||+.+......... ..+...+.
T Consensus       354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~  431 (435)
T 1p22_A          354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYT  431 (435)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC---------------------
T ss_pred             CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCcccee
Confidence            99999999997754222222223677888999999999995 78899999999999999988765544332 34555555


Q ss_pred             EEe
Q 012996          318 VVR  320 (451)
Q Consensus       318 ~s~  320 (451)
                      |.+
T Consensus       432 ~~~  434 (435)
T 1p22_A          432 YIS  434 (435)
T ss_dssp             ---
T ss_pred             eec
Confidence            543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=286.10  Aligned_cols=286  Identities=13%  Similarity=0.154  Sum_probs=226.0

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC---Cc---ceee
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GR---LLKK  117 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~---~~~~  117 (451)
                      |+|+++.+++++       .|+......... ..|.+.|++++|+| ++++|++|+.||.|++||+.+   +.   ....
T Consensus        35 f~~~~~~~~~~~-------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  107 (437)
T 3gre_A           35 FGPIQEIVRSPN-------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT  107 (437)
T ss_dssp             GCCCCCCCCCCC-------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred             cCCccccccccc-------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence            788888887764       377555444444 56789999999999 999999999999999999977   43   2223


Q ss_pred             eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec--ccC--CcCceeEEEEeecCCeeEEE
Q 012996          118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTG--HTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~~i~~~~~~~~~~l~  193 (451)
                      + .|...|.+++|+|++++|++|+.||.|++||+................+..  +..  +...+.++.+...+++.+++
T Consensus       108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            3 599999999999999999999999999999995210000000000011111  122  56777888765544448999


Q ss_pred             EeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCC
Q 012996          194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHS  269 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~  269 (451)
                      +++.|+.|++||+++++.+..+.   |...|.+++|+|++.+|++|+.||.|++||++..         ..+..+. .|.
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~  257 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---------VLIRSWSFGDH  257 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEEBCTTC
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---------cEEEEEecCCC
Confidence            99999999999999999988886   5789999999999999999999999999999875         5556654 788


Q ss_pred             cceeEEEEec-----CCEEEEEcCCCcEEEEeCCCCceEEEeec--------------------------CCCCeeEEEE
Q 012996          270 KAVTCLAYST-----GDLLISGSEDGMVRVWDPITHNIVRMFRL--------------------------AKGPVNNILV  318 (451)
Q Consensus       270 ~~v~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~~v~~l~~  318 (451)
                      ..|++++|+|     +.+|++|+.||.|++||+.+++++..+..                          |...|++++|
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~  337 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV  337 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence            8999997665     55999999999999999999998888774                          4456889999


Q ss_pred             EecCceeeeccCCCCccccccCCCCCCCccc
Q 012996          319 VRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD  349 (451)
Q Consensus       319 s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~  349 (451)
                      + ++++|++++.||.|++|++........+.
T Consensus       338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          338 S-NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             E-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             C-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            9 78999999999999999998776655443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2e-36  Score=283.16  Aligned_cols=254  Identities=15%  Similarity=0.203  Sum_probs=217.4

Q ss_pred             eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCC----------CcceeeeccccCCeeEEEEccCCc-EEEEeeCC
Q 012996           76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVAS----------GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSED  143 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d  143 (451)
                      ...|.+.|++++|+|+ +.+|++++.+|.|++||+.+          ...+..+.+|...|.+++|+|++. +|++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            3557899999999997 78999999999999999987          577788899999999999999888 99999999


Q ss_pred             CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---ceeeeee-ccc
Q 012996          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS  219 (451)
Q Consensus       144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~  219 (451)
                      |.|++|++.+.....    ........+.+|...|.+++|++.+. .+|++++.||.|++||++++   +.+..+. |..
T Consensus       204 g~i~vwd~~~~~~~~----~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          204 HTICLWDINATPKEH----RVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             SCEEEEETTSCCBGG----GEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             CeEEEEeCCCCCCCC----ceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            999999996521110    01112455678999999999999432 79999999999999999987   4555554 788


Q ss_pred             ceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEe
Q 012996          220 VIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWD  296 (451)
Q Consensus       220 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd  296 (451)
                      .|.+++|+|++. +|++|+.||.|++||++...        .++..+..|...|++++|+| + .+|++++.||.|+|||
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            999999999887 68899999999999998753        45677888999999999999 6 5799999999999999


Q ss_pred             CCC--------------CceEEEeecCCCCeeEEEEEecCc-eeeeccCCCCccccccCCC
Q 012996          297 PIT--------------HNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       297 ~~~--------------~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s~d~~i~iw~~~~~  342 (451)
                      +..              .+++..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            987              467888889999999999999999 8999999999999998753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.7e-34  Score=267.04  Aligned_cols=310  Identities=13%  Similarity=0.107  Sum_probs=247.8

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~   81 (451)
                      ..++++++ .|+.|++||+.+++.+..+..+.    .+.+++  |+|+++++++++..++.|++||..+++......+..
T Consensus         2 ~~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~~----~~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            2 TFAYIANS-ESDNISVIDVTSNKVTATIPVGS----NPMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEEET-TTTEEEEEETTTTEEEEEEECSS----SEEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             CEEEEEcC-CCCEEEEEECCCCeEEEEeecCC----CcceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            35788888 99999999999999998887543    367888  999999885544333999999999888876666667


Q ss_pred             CeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE-EEeeCCCcEEEeeCcchhhhhh
Q 012996           82 PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      .+.+++|+|++++|+ +++.++.|++||+.+++.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+      
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~------  147 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT------  147 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT------
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC------
Confidence            999999999999875 4556799999999999888877654 568999999999977 6888899999999954      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-  237 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  237 (451)
                           ......+..+ ..+.+++|++++  ..+ ++++.++.|++||+++++....+.+...+.+++|+|+++++++++ 
T Consensus       148 -----~~~~~~~~~~-~~~~~~~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          148 -----KAVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             -----TEEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred             -----CcEEEEEecC-CCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec
Confidence                 2334444444 456899999988  555 677889999999999999988888888999999999999999988 


Q ss_pred             --CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE-EEEcCCCcEEEEeCCCCceEEEeecCCCCe
Q 012996          238 --RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRLAKGPV  313 (451)
Q Consensus       238 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  313 (451)
                        .++.|++||+.+.         ..+..+..|. .+.+++|+| +++| ++++.|+.|++||+.+++.+..+..|..+.
T Consensus       220 ~~~~~~v~~~d~~~~---------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~  289 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTN---------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY  289 (391)
T ss_dssp             CSSCCEEEEEETTTT---------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CcCCCcEEEEECCCC---------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence              6899999999875         4455565554 578999999 8766 677889999999999999999988776543


Q ss_pred             e---EEE------------EEecC----------ceeeeccCCCCccccccCCCC
Q 012996          314 N---NIL------------VVRRP----------LYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       314 ~---~l~------------~s~~~----------~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      .   .+.            |+.+.          ..|...+.|...++|++..+.
T Consensus       290 ~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          290 ASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             CCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             ccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence            2   122            33221          345666778889999986543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=274.70  Aligned_cols=279  Identities=13%  Similarity=0.113  Sum_probs=227.8

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeee------------------------------------
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKS------------------------------------   77 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~------------------------------------   77 (451)
                      ..+.+++  |+++|++++++. + +.|++||+.+++   .....                                    
T Consensus         5 ~p~~~v~--~s~dg~~l~~~~-~-~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            5 HPLQNLL--TSRDGSLVFAII-K-NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCCCEEE--ECSSSSEEEEEE-T-TEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             ccEEEEE--ecCCCCEEEEEe-C-CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            3466777  999999766664 4 899999988776   22111                                    


Q ss_pred             -------------------cCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcC--CCcceeeec--cccCCeeEEEEccC
Q 012996           78 -------------------LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVA--SGRLLKKWH--AHYRAVTCLVFSED  133 (451)
Q Consensus        78 -------------------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~  133 (451)
                                         .|...|.+++|+|++++| ++|+.||.|++||+.  +++.+..+.  .|...|.+++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                               122369999999999996 899999999999999  888888876  56789999999999


Q ss_pred             CcEEEEeeCCCcEEEeeCcchhhhhhhhccccc-ceecccCCcCceeEEEEeec---CCeeEEEEeeCCCcEEEEEcCCC
Q 012996          134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHL-YLHSFTGHTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKG  209 (451)
Q Consensus       134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~---~~~~~l~s~~~d~~i~iwd~~~~  209 (451)
                      +++|++|+.+|.|.+|++.+..        ... ....+.+|...|.+++|+|+   +  .+|++++.|+.|++||++++
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~--~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIP--------EEKFTQEPILGHVSMLTDVHLIKDSDGH--QFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCC--------CSSCCCCCSEECSSCEEEEEEEECTTSC--EEEEEEETTSCEEEEEESCT
T ss_pred             CCEEEEEeCCCcEEEEecCCcc--------cccccceeeecccCceEEEEEcCCCCCC--cEEEEEcCCCcEEEEECCCC
Confidence            9999999999999999996521        111 33467789999999999998   6  89999999999999999999


Q ss_pred             ceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec---------------------
Q 012996          210 RLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS---------------------  266 (451)
Q Consensus       210 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------------  266 (451)
                      +.+..+.  |...|.+++|+ ++.+|++++.|+.|++||+.++..         +..+.                     
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN---------LSTFDYNSLIKPYLNDQHLAPPRFQN  300 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE---------EEEEECHHHHGGGCCTTSBC------
T ss_pred             ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE---------eeeecchhhhhhhhhhcccccccccc
Confidence            8887643  78899999999 999999999999999999988642         22222                     


Q ss_pred             ----cCCcceeEEEEec-CCEEEEEc-CCCcEEEEeC--CCC---ceEEEeecCCCCeeEEEEEecCceeeeccC-----
Q 012996          267 ----DHSKAVTCLAYST-GDLLISGS-EDGMVRVWDP--ITH---NIVRMFRLAKGPVNNILVVRRPLYLNLGSF-----  330 (451)
Q Consensus       267 ----~~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~-----  330 (451)
                          .+...|.+++|+| +.+|++++ .|+.|++|++  .++   ..+..+..| +.|.+++|+|++.++++++.     
T Consensus       301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~  379 (450)
T 2vdu_B          301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGV  379 (450)
T ss_dssp             ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSS
T ss_pred             cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCC
Confidence                2346799999999 99999998 8999999999  565   777888887 89999999997655555554     


Q ss_pred             -CCCccccccC
Q 012996          331 -SNPHTSSRRH  340 (451)
Q Consensus       331 -d~~i~iw~~~  340 (451)
                       +..+.+|.+.
T Consensus       380 ~~~~i~v~~~~  390 (450)
T 2vdu_B          380 QKNFAKFIEYN  390 (450)
T ss_dssp             CCCSEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence             4557888765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.8e-36  Score=277.82  Aligned_cols=275  Identities=15%  Similarity=0.223  Sum_probs=222.7

Q ss_pred             EEEeecCCCCCCeEEEECccCce-eeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCc--------
Q 012996            3 LLIASSSVADTGIGCWDLESGAE-QLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQ--------   72 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~--------   72 (451)
                      .++++++ .||.|+|||+..... ...+....+|...|.+++  |+| ++.++++++.| |.|++|++.++.        
T Consensus        48 ~~~~~~~-~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~l~s~s~d-g~v~vw~~~~~~~~~~~~~~  123 (402)
T 2aq5_A           48 ALICEAS-GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSED-CTVMVWEIPDGGLVLPLREP  123 (402)
T ss_dssp             EEEBCCS-SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTEEEEEETT-SEEEEEECCTTCCSSCBCSC
T ss_pred             EEEEEEc-CCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCEEEEEeCC-CeEEEEEccCCCCccccCCc
Confidence            3556677 899999999865432 233334456778899999  999 89999999988 999999998763        


Q ss_pred             eeeeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeee--ccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           73 VEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        73 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      ......|...|.+++|+|++ ++|++|+.||.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.||.|++|
T Consensus       124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  203 (402)
T 2aq5_A          124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI  203 (402)
T ss_dssp             SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence            23445688999999999998 69999999999999999999999999  8899999999999999999999999999999


Q ss_pred             eCcchhhhhhhhcccccceecc-cCCcCc-eeEEEEeecCCeeEEEEe---eCCCcEEEEEcCCCce-e--eeeecccce
Q 012996          150 SLLTVFEECESQRASHLYLHSF-TGHTLR-ITDIVIGYGGVSATIVSA---SEDRTCKVWSLLKGRL-L--RNIVFPSVI  221 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~-~--~~~~~~~~i  221 (451)
                      |+++           ...+..+ ..|... +.++.|++++  .++++|   +.|+.|++||++++.. +  ..+.+...+
T Consensus       204 d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  270 (402)
T 2aq5_A          204 EPRK-----------GTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV  270 (402)
T ss_dssp             ETTT-----------TEEEEEEECSSCSSSCCEEEECSTT--EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred             eCCC-----------CceeeeeccCCCCCcceEEEEcCCC--cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence            9954           3345555 677765 8999999987  889998   7999999999988664 2  233467789


Q ss_pred             eEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          222 DAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       222 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      .+++|+|++.+|++ |+.||.|++||+.+..+.     ...+..+. |...|.+++|+| +.++++  .++.+++|++.+
T Consensus       271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-----~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-----LHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             EEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----EEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----eEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            99999999999975 557999999999886420     12222332 568999999999 777654  567999999987


Q ss_pred             Cce
Q 012996          300 HNI  302 (451)
Q Consensus       300 ~~~  302 (451)
                      +.+
T Consensus       343 ~~~  345 (402)
T 2aq5_A          343 RKC  345 (402)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.7e-35  Score=265.55  Aligned_cols=269  Identities=17%  Similarity=0.202  Sum_probs=216.9

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-----eeeecCCCCeeEEEECC--CCcEEEEeccCCCEEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYM  106 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-----~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i  106 (451)
                      +|...|.+++  |+|++++|++++.| |.|++||+.++..     .....|...|.+++|+|  ++++|++|+.||.|++
T Consensus         9 gH~~~v~~~~--~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            9 GHDDLVHDVV--YDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             CCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             ccccceeEEE--EcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            5678899999  99999999999998 9999999986532     12245889999999999  6999999999999999


Q ss_pred             EEcCCC---------cceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhccc--ccceecccC
Q 012996          107 WEVASG---------RLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRAS--HLYLHSFTG  173 (451)
Q Consensus       107 wd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~  173 (451)
                      ||+.++         +.+..+..|...|.+++|+|+  +.+|++++.||.|++||+++...........  .........
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999887         457778899999999999999  9999999999999999997643221111000  001112236


Q ss_pred             CcCceeEEEEeec---CCeeEEEEeeCCCcEEEEEcCCCce--eeeee-cccceeEEEECCCC----CEEEEEeCCCcEE
Q 012996          174 HTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKGRL--LRNIV-FPSVIDAIALDPAE----HVFYAGSRDGSIY  243 (451)
Q Consensus       174 ~~~~i~~i~~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~i~  243 (451)
                      |...+.+++|+|+   +  ..+++++.++.+.+|+...++.  +..+. |...|.+++|+|++    .+|++|+.||.|+
T Consensus       166 ~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSP--EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             CSCCCEEEEECCCSSSC--CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             cccceeEEEeccCCCCC--cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            8889999999997   5  8999999999998888877765  44443 78899999999998    8999999999999


Q ss_pred             EEEccCCCCCC-------------------------------------CCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996          244 IAALNAESPST-------------------------------------SSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (451)
Q Consensus       244 i~d~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s  285 (451)
                      +||++......                                     .......+..+.+|...|++++|+| +.+|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence            99998752211                                     0111256677889999999999999 999999


Q ss_pred             EcCCCcEEEEeCCCCceEEEee
Q 012996          286 GSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      |+.||.|++||+.+++.+..+.
T Consensus       324 ~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             EETTSCEEEEEECTTSCEEEEE
T ss_pred             ecCCCcEEEEecCcCcchhhee
Confidence            9999999999999886655543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-35  Score=270.59  Aligned_cols=259  Identities=14%  Similarity=0.171  Sum_probs=213.3

Q ss_pred             ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--ee-eeecCCCCeeEEEECCC--CcEEEEe
Q 012996           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSH--GTYIAGG   98 (451)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~-~~~~~~~~v~~~~~~~~--~~~l~~~   98 (451)
                      +.+..+.+   |...|.+++  |+|+++++++++.| |.|++|++....  .. ....|...|.+++|+|+  +++|++|
T Consensus         2 ~~~~~~~~---h~~~v~~~~--~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A            2 SMVVIANA---HNELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             ---CCEEE---CCCCEEEEE--ECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CccEEecC---CcccEEEEE--EcCCCCEEEEEECC-CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence            34445554   557788988  99999999999988 999999997433  22 23458899999999987  9999999


Q ss_pred             ccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996           99 GQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus        99 ~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      +.||.|++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.||.|++||+.+         ........+..|
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~  146 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE---------NGTTSPIIIDAH  146 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT---------TSCCCEEEEECC
T ss_pred             ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC---------CCceeeEEecCC
Confidence            999999999999887  67788889999999999998  99999999999999999965         222344566789


Q ss_pred             cCceeEEEEee-------------cCCeeEEEEeeCCCcEEEEEcCCCcee----eeee-cccceeEEEECCC---CCEE
Q 012996          175 TLRITDIVIGY-------------GGVSATIVSASEDRTCKVWSLLKGRLL----RNIV-FPSVIDAIALDPA---EHVF  233 (451)
Q Consensus       175 ~~~i~~i~~~~-------------~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~-~~~~i~~~~~~~~---~~~l  233 (451)
                      ...|.+++|+|             ++  .++++++.||.|++||++++...    ..+. |...|.+++|+|+   +.+|
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKES--RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             TTCEEEEEECCCC----------CTT--CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             CCceEEEEEcCccccccccccCCCCC--CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence            99999999999             45  89999999999999999876533    3333 7889999999999   8999


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      ++++.||.|++||+.......    .........|...|++++|+| +.+|++++.||.|++|++......
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             EEEeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            999999999999998863211    122333445889999999999 999999999999999998865433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-36  Score=276.68  Aligned_cols=252  Identities=14%  Similarity=0.138  Sum_probs=199.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .++||++ .|++|+  |...++.+      .+|...|.+++  |+|+|       .+ +.+.+|+.+.... ....|...
T Consensus        28 ~~iASas-~D~TV~--d~~~~~~l------~gh~~~v~~V~--FsPdg-------~~-~~~~~~~~~~~~~-~~~~~~~~   87 (588)
T 2j04_A           28 TLYLTTF-PDISIG--QPKYAKDI------NCNSKNLFHVK--EFPLE-------FE-NKLDFELAQQNGL-LNSQPVCY   87 (588)
T ss_dssp             CEEEECS-SSEEEE--EECCCSCC------SSBGGGTEEEE--EECCC-------CC-CTTTTSCCCSSCS-STTSCSCC
T ss_pred             CEEEEEc-CCceee--ccccccee------cCCCccEEEEE--ECCCC-------Cc-ceEEEEeCCCceE-eecCCCCc
Confidence            3789999 999999  75555433      36788999999  99999       23 7888887654442 33345789


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC-----CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      |.+++|||+|.+||+++.||.|++||...  ++..+. |..     .|.+++|+|||++|++|+.||+|++||+.++...
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            99999999999999999999999999544  666666 665     4999999999999999999999999999652100


Q ss_pred             hhhhcccccceecc----cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee---eeee--cccceeEEEECC
Q 012996          158 CESQRASHLYLHSF----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV--FPSVIDAIALDP  228 (451)
Q Consensus       158 ~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~--~~~~i~~~~~~~  228 (451)
                          ......+.++    .+|...|.+++|+|++    +++++.|++|++||+..+...   ..+.  |...|.+++|+ 
T Consensus       165 ----~~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          165 ----TPEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             ----CCCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             ----cccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence                0000124444    6788999999999873    889999999999999887742   3452  56789999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE--ec-CCEEEEEcCCCcEEEEeCC
Q 012996          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                       +..+++++ ++.|++||+.+..         ......+|...|..++|  +| +..|++++.||+ ++|...
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~---------~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYS---------ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTE---------EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             -CCEEEEEe-CCeEEEEECCCCe---------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             68888887 6999999998863         22333389999999999  99 889999999999 999875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=278.63  Aligned_cols=258  Identities=17%  Similarity=0.258  Sum_probs=206.9

Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-----------ceeeecccc------------CCeeEEEEccCC
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----------LLKKWHAHY------------RAVTCLVFSEDG  134 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~  134 (451)
                      .+.+.|.+++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            +.|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            356899999999999999999999999999998876           477888998            889999999988


Q ss_pred             --cEEEEeeCCCcEEEeeCcchhhhhhhh---c-------------c------------cccceec-ccCCcCceeEEEE
Q 012996          135 --SFLISGSEDGCVRIWSLLTVFEECESQ---R-------------A------------SHLYLHS-FTGHTLRITDIVI  183 (451)
Q Consensus       135 --~~l~s~~~dg~i~vwd~~~~~~~~~~~---~-------------~------------~~~~~~~-~~~~~~~i~~i~~  183 (451)
                        .+|++++.||.|++||+.+........   .             .            ....... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              799999999999999996532110000   0             0            0000112 3679999999999


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCC-Cceeeee--------ecccceeEEEECCCC-CEEEEEeCCCcEEEEEccCCCCC
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLK-GRLLRNI--------VFPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPS  253 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~--------~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  253 (451)
                      ++++  .+|+++ .|+.|++||+++ ++.+..+        .|...|.+++|+|++ .+|++|+.||.|++||+++....
T Consensus       186 ~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          186 NSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             CTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             cCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            9988  899998 799999999984 4444422        377889999999998 99999999999999999886421


Q ss_pred             CCCCCceeeeeeccCCc------------ceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCCC-------
Q 012996          254 TSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGP-------  312 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~------------~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~-------  312 (451)
                      .     ..+..+.+|..            .|.+++|+| +.+|++++. |.|++||+.+ ++++..+..|...       
T Consensus       263 ~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          263 D-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             C-----TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             c-----ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            1     11345566654            999999999 999999998 9999999997 8899999888642       


Q ss_pred             --------eeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          313 --------VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       313 --------v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                              +..++|+|++++|++++.||.|++|++.+...
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                    33499999999999999999999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-36  Score=275.82  Aligned_cols=260  Identities=11%  Similarity=-0.014  Sum_probs=210.0

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  115 (451)
                      ..+|.+++  |+|||+++|+++.| ++|+  |...++..  ..|...|.+++|+|+|       .++.+.+|+   ++..
T Consensus        15 ~~~v~sv~--~SpDG~~iASas~D-~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~   77 (588)
T 2j04_A           15 EDWKNNLT--WARDGTLYLTTFPD-ISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFEL---AQQN   77 (588)
T ss_dssp             SSSSCCEE--ECTTSCEEEECSSS-EEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSC---CCSS
T ss_pred             hccEEEEE--ECCCCCEEEEEcCC-ceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEe---CCCc
Confidence            36677777  99999999999999 9999  75555433  5688999999999999       455555555   3332


Q ss_pred             eeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC-----ceeEEEEeecCCe
Q 012996          116 KKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-----RITDIVIGYGGVS  189 (451)
Q Consensus       116 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~  189 (451)
                      ..+. .|...|.+++|+|+|..|++++.||.|++||...             .+..+. |..     .|.+++|+|++  
T Consensus        78 ~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------~l~~l~-~~~~~~~~sv~svafSPDG--  141 (588)
T 2j04_A           78 GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------MLTNLD-SKGNLSSRTYHCFEWNPIE--  141 (588)
T ss_dssp             CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------EEEECC-CSSCSTTTCEEEEEECSSS--
T ss_pred             eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------eeeecc-CCCccccccEEEEEEcCCC--
Confidence            2332 4688999999999999999999999999999632             444555 555     59999999999  


Q ss_pred             eEEEEeeCCCcEEEEEcCCCce-------eeeee-----cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          190 ATIVSASEDRTCKVWSLLKGRL-------LRNIV-----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~-------~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      ++|++|+.||+|++||+.++..       +..+.     |...|.+++|+|+|  +++++.|+.|++||+......    
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~----  215 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ----  215 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC----
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc----
Confidence            8999999999999999998753       45542     45689999999999  888999999999999876410    


Q ss_pred             Cceeeeee-ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEE--EecCceeeeccCCCCc
Q 012996          258 GMHIIGSL-SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV--VRRPLYLNLGSFSNPH  334 (451)
Q Consensus       258 ~~~~~~~~-~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--s~~~~~l~~~s~d~~i  334 (451)
                        ....++ .+|...|.+++|+ +..||+++ ++.|++||+.+++......+|.+.|..++|  +|++..|++++.||. 
T Consensus       216 --~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-  290 (588)
T 2j04_A          216 --PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-  290 (588)
T ss_dssp             --CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred             --cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence              123345 4788999999999 89999997 699999999988774444479999999999  999999999998888 


Q ss_pred             ccccc
Q 012996          335 TSSRR  339 (451)
Q Consensus       335 ~iw~~  339 (451)
                      ++|..
T Consensus       291 klw~~  295 (588)
T 2j04_A          291 KVLLE  295 (588)
T ss_dssp             EEEES
T ss_pred             EEEee
Confidence            55553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=294.04  Aligned_cols=253  Identities=18%  Similarity=0.160  Sum_probs=216.1

Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeC
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~  151 (451)
                      ...|.+.|++++|+|++++|++|+.||.|++||+.  ++..+..+.+|.++|++++|+|+  +++|++|+.||.|++||+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            45688999999999999999999999999999998  55778889999999999999987  999999999999999999


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--e-eecccceeEEEECC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--N-IVFPSVIDAIALDP  228 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~-~~~~~~i~~~~~~~  228 (451)
                      .+         ........+.+|...|.+++|+|+..+..+++++.||.|++||++++....  . ..+...|.+++|+|
T Consensus        85 ~~---------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p  155 (753)
T 3jro_A           85 EN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (753)
T ss_dssp             ET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred             CC---------CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence            65         222356677889999999999998222899999999999999998874332  2 23788999999999


Q ss_pred             -------------CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecC----CEEEEEcCCCc
Q 012996          229 -------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG----DLLISGSEDGM  291 (451)
Q Consensus       229 -------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~l~s~~~dg~  291 (451)
                                   ++.++++|+.||.|++||++.....     ......+.+|...|++++|+|.    .+|++|+.||.
T Consensus       156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             CC---------CGGGCCEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             cccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-----ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence                         5899999999999999999876421     2456678899999999999983    68999999999


Q ss_pred             EEEEeCCCCc-----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          292 VRVWDPITHN-----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       292 i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      |++||+.++.     .+.....|.+.|++++|+|+|++|++++.||.|++|++...
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9999998864     33444568889999999999999999999999999998843

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-34  Score=262.39  Aligned_cols=261  Identities=15%  Similarity=0.131  Sum_probs=223.1

Q ss_pred             EEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEEC-CCCceeeeec
Q 012996            4 LIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW-SKPQVEVKSL   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~-~~~~~~~~~~   78 (451)
                      +|++++ .||.|+|||+.++.   ....+.   .|...|.+++  |+|+++ ++++++.+ |.|++||+ .++.......
T Consensus        25 ~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~   97 (342)
T 1yfq_A           25 LLLITS-WDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCN--FIDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             EEEEEE-TTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEE--EEESSSEEEEEEETT-SCEEEECSSSSSSEEECBS
T ss_pred             EEEEEc-CCCeEEEEEeCCCCccccceeee---ecCCceEEEE--ECCCCCcEEEEEcCC-CeEEEEEeccCCceEeccc
Confidence            678888 99999999999887   233333   4667899999  999999 99999988 99999999 8888776677


Q ss_pred             --CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC---------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEE
Q 012996           79 --PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVR  147 (451)
Q Consensus        79 --~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  147 (451)
                        |...|.+++|+| +++|++++.||.|++||+.+         ++++..+. |...|.+++|+|++  +++++.|+.|+
T Consensus        98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~  173 (342)
T 1yfq_A           98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQ  173 (342)
T ss_dssp             CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEE
T ss_pred             cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEE
Confidence              899999999999 99999999999999999988         77777776 89999999999876  99999999999


Q ss_pred             EeeCcc-hhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCC------ceeeeee-cc
Q 012996          148 IWSLLT-VFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKG------RLLRNIV-FP  218 (451)
Q Consensus       148 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-~~  218 (451)
                      +||+++ ..         .........|...+.+++|++ ++  .++++++.||.|++|++...      +....+. +.
T Consensus       174 i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          174 WFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQ--EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGG--CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             EEECCcccc---------ccceeeecCCCCceeEEEECCCCC--CEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence            999954 21         112334456888999999999 87  89999999999999999876      6666665 43


Q ss_pred             c---------ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEec-CCEEEEEc
Q 012996          219 S---------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       219 ~---------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~s~~  287 (451)
                      .         .|.+++|+|++++|++++.||.|++||+.+.         ..+..+.+| ...|++++  | +.+|++|+
T Consensus       243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDSVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred             ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---------hHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence            3         8999999999999999999999999999876         567778888 99999999  7 99999999


Q ss_pred             CCCc-EEEEeC
Q 012996          288 EDGM-VRVWDP  297 (451)
Q Consensus       288 ~dg~-i~iwd~  297 (451)
                      .||. .+.|..
T Consensus       312 ~Dg~~~~~~~~  322 (342)
T 1yfq_A          312 SDDTFKTNAAI  322 (342)
T ss_dssp             ECTHHHHCSSS
T ss_pred             cCCcccccccc
Confidence            9998 655553

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=9.7e-35  Score=252.25  Aligned_cols=271  Identities=11%  Similarity=0.083  Sum_probs=197.8

Q ss_pred             eEEEeecCCCCCCeEEEECccC---ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec
Q 012996            2 ELLIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~   78 (451)
                      |..+++++  ..+|++|+..++   +.++++..+.   ..|..+.  ++|+...|+...-                 -..
T Consensus        54 ~~~~~~~~--~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~--~~~~~~~~~~~~~-----------------~~~  109 (356)
T 2w18_A           54 EPCIITAC--EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIV--PVPDVYNLVCVAL-----------------GNL  109 (356)
T ss_dssp             EEEEEEEE--SSEEEEEEESSSSBEEEEEEEECCS---SCEEEEC--CCTTCCSCEEEEE-----------------CSS
T ss_pred             ccEEEEec--cceEEEcccCCCccceeeEEEeccC---ceeEEEE--EcCcccceeeeee-----------------ccc
Confidence            67788888  679999999998   7777777654   4566666  8887664433221                 112


Q ss_pred             CCCCeeEEEECCC----CcEEEEeccCCCEEEEEcCCCcceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           79 PAEPIKPIAANSH----GTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        79 ~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      +...|.+++|+|+    +.++++++.+  +.+|++.+++.+.+ ..+|.+.|..++|+|+|+                  
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~------------------  169 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG------------------  169 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSC------------------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCc------------------
Confidence            3467999999999    9999998754  77887654444443 234444444444444443                  


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c---ccceeEEEECC
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALDP  228 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~---~~~i~~~~~~~  228 (451)
                                   .+..+.+|...++.++|++ ++++.+|++++.|++|+|||+.+++.+..+. +   ...+.+++|+|
T Consensus       170 -------------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp  236 (356)
T 2w18_A          170 -------------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE  236 (356)
T ss_dssp             -------------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE
T ss_pred             -------------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC
Confidence                         3334556888889999999 5555899999999999999999999999986 3   23577889999


Q ss_pred             CCCEE------------EEEeCCCcEEEEEccCCCCCCCCCCceeeeee-----ccCCcceeEEEEecCCEEEEEcCCCc
Q 012996          229 AEHVF------------YAGSRDGSIYIAALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYSTGDLLISGSEDGM  291 (451)
Q Consensus       229 ~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~s~~~dg~  291 (451)
                      ++.++            ++|+.|++|++||..++.         .+..+     .+|...+.+..++ +.++++|+.||+
T Consensus       237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---------~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgT  306 (356)
T 2w18_A          237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---------SVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGT  306 (356)
T ss_dssp             TTEEEEEEC------------CCEEEEEEETTTTE---------EEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSC
T ss_pred             CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---------EEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCc
Confidence            99887            567889999999998763         22222     4666655544444 789999999999


Q ss_pred             EEEEeCCCCceEEEeecCCCCee-EEEEEecCceeeeccCCCCcccccc
Q 012996          292 VRVWDPITHNIVRMFRLAKGPVN-NILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      |+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|++|+.
T Consensus       307 IkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          307 IAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999999999999887655 6899999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.6e-34  Score=266.36  Aligned_cols=299  Identities=13%  Similarity=0.103  Sum_probs=239.6

Q ss_pred             CCCCeEEEECc--cC--ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee------ecCC
Q 012996           11 ADTGIGCWDLE--SG--AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------SLPA   80 (451)
Q Consensus        11 ~dg~i~vwd~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~------~~~~   80 (451)
                      .++.+.||.+.  ++  +.+..+..+    ..+.+++  |+|++.++++++.+ +.|++||..+++....      ..|.
T Consensus        97 ~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~--~s~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~  169 (433)
T 3bws_A           97 EELNEKLIALDKEGITHRFISRFKTG----FQPKSVR--FIDNTRLAIPLLED-EGMDVLDINSGQTVRLSPPEKYKKKL  169 (433)
T ss_dssp             GGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCE--ESSSSEEEEEBTTS-SSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred             CCCceEEEEECCCCCcceEEEEEcCC----CCceEEE--EeCCCeEEEEeCCC-CeEEEEECCCCeEeeecCcccccccC
Confidence            56645555543  34  455555433    2344566  99966666666665 9999999998776542      2467


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEE-eeCCCcEEEeeCcchhhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ..|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||+++      
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~------  243 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT------  243 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT------
T ss_pred             CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC------
Confidence            78999999999999999999999999999999999999899999999999999988854 45799999999954      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEee--------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (451)
                           ...+..+.. ...+.+++|++++  ..+++++        .|+.|++||+.+++....+.+...+.+++|+|+++
T Consensus       244 -----~~~~~~~~~-~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  315 (433)
T 3bws_A          244 -----KLEIRKTDK-IGLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN  315 (433)
T ss_dssp             -----TEEEEECCC-CSEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT
T ss_pred             -----CcEEEEecC-CCCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC
Confidence                 223344443 4458999999988  7888877        58899999999999888887888899999999997


Q ss_pred             EE-EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC---------------CCcEEE
Q 012996          232 VF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE---------------DGMVRV  294 (451)
Q Consensus       232 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~---------------dg~i~i  294 (451)
                      .+ ++++.++.|++||+.+.         .....+. +...+.+++|+| +.++++++.               ||.|++
T Consensus       316 ~l~~~~~~~~~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~  385 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV  385 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEE
T ss_pred             EEEEEecCCCEEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEE
Confidence            55 56689999999999875         3344443 677899999999 888888776               579999


Q ss_pred             EeCCCCceEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccCC
Q 012996          295 WDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHG  341 (451)
Q Consensus       295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~  341 (451)
                      ||+.+++.+..+.. ...+.+++|+|+|++|++++ .|+.+++|++.+
T Consensus       386 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          386 IDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            99999999998887 45799999999999998776 599999999764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=288.05  Aligned_cols=251  Identities=15%  Similarity=0.193  Sum_probs=210.7

Q ss_pred             CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--ee-eeecCCCCeeEEEECCC--CcEEEEeccCCCEEEE
Q 012996           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMW  107 (451)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~-~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw  107 (451)
                      .+|...|.+++  |+|+++++++++.| |.|++||+.++.  .. ....|.++|.+++|+|+  +++|++|+.||.|++|
T Consensus         6 ~gH~~~V~~l~--~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            6 NAHNELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             --CCCCEEEEC--CCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             ccCcceeEEEE--ECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            35678899999  99999999999988 999999987443  22 33458899999999988  9999999999999999


Q ss_pred             EcCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          108 EVASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       108 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                      |+.+++  .+..+.+|...|.+++|+|+  ++++++|+.||.|++||+++         ........+.+|...|.+++|
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~---------~~~~~~~~~~~~~~~v~~l~~  153 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE---------NGTTSPIIIDAHAIGVNSASW  153 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS---------SSCCCCEEEECCSSCEEEEEE
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec---------CCCcceeEeecCCCceEEEEe
Confidence            999886  67778899999999999998  99999999999999999966         223344556789999999999


Q ss_pred             eecC-----------CeeEEEEeeCCCcEEEEEcCCCc----eeeeee-cccceeEEEECCC---CCEEEEEeCCCcEEE
Q 012996          184 GYGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPA---EHVFYAGSRDGSIYI  244 (451)
Q Consensus       184 ~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~i~i  244 (451)
                      +|..           ++..+++|+.||.|++||++++.    ....+. |...|.+++|+|+   +.+|++|+.||.|++
T Consensus       154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence            9841           12899999999999999998873    334444 7889999999999   999999999999999


Q ss_pred             EEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      ||+.......    .........|...|++++|+| +.+|++|+.||.|++||+.+
T Consensus       234 wd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          234 WTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             ecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9998863211    112334456889999999999 99999999999999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-33  Score=257.28  Aligned_cols=289  Identities=9%  Similarity=0.020  Sum_probs=210.1

Q ss_pred             EEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-
Q 012996           17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-   95 (451)
Q Consensus        17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-   95 (451)
                      ||++.+...+..+.   .|...|.+++  |+|+|+++++++.+  .+++|+..+........+ ..+..+++.++++.+ 
T Consensus         3 i~s~~~~~~~~~~~---~h~~~V~~v~--fs~dg~~la~g~~~--~~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A            3 LGSMITRNPIVPEN---HVSNPVTDYE--FNQDQSCLILSTLK--SFEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             -------------------CCCCCEEE--ECTTSSEEEEECSS--EEEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEE
T ss_pred             cccccccCCccccc---cCCCceEEEE--ECCCCCEEEEEcCC--EEEEEecCCcceeeeeec-CCeEEEEEcCCCCEEE
Confidence            56666666665444   4557788888  99999999988765  478999887765544333 358889999988887 


Q ss_pred             EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc
Q 012996           96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (451)
Q Consensus        96 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (451)
                      ++|+.|+.|++||+.+++.+..+. |...|.++.|+++.  ++++ .|+.|++||+.+.          ...+..+..  
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~----------~~~~~~~~~--  138 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNP----------WKRITDDIR--  138 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTT----------CCBSSCCEE--
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCC----------ceeeEEecc--
Confidence            567888999999999999988886 67799999999764  4444 4789999999652          122333332  


Q ss_pred             CceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCCc---------------e-eeeee-cccceeEEEECCCCCEEEEEe
Q 012996          176 LRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGR---------------L-LRNIV-FPSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       176 ~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~---------------~-~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (451)
                       +...+++++ .  .+.++ |+.||.|++||+.++.               + +..+. |...|.+++|+|++.+|++|+
T Consensus       139 -~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          139 -FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             -EEEEEEEET-T--EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence             333445555 2  34444 7899999999999865               1 44444 889999999999999999999


Q ss_pred             CCCc-EEEEEccCCCCCCCCCCceeeeeec-c-CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE--Ee-----
Q 012996          238 RDGS-IYIAALNAESPSTSSYGMHIIGSLS-D-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR--MF-----  306 (451)
Q Consensus       238 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~--~~-----  306 (451)
                      .||. |++||++++         ..+..+. + |...|++++|+| +.+|++++.|++|++||+..+....  .+     
T Consensus       215 ~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~  285 (355)
T 3vu4_A          215 QDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN  285 (355)
T ss_dssp             TTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred             CCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence            9998 999999986         4566676 5 999999999999 9999999999999999997653211  11     


Q ss_pred             -------------e---cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          307 -------------R---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       307 -------------~---~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                                   .   .+..+...++|++++++|++++.||.+.+|++...
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                         0   11223477999999999999999999999997643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5e-35  Score=270.12  Aligned_cols=287  Identities=9%  Similarity=0.027  Sum_probs=200.9

Q ss_pred             CCceEEecceEeeccCcccCCCCCCccEEEEECCCCc------e----eeeecCCCCeeEEEE-----------------
Q 012996           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------V----EVKSLPAEPIKPIAA-----------------   88 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~------~----~~~~~~~~~v~~~~~-----------------   88 (451)
                      +..+....  .+|++..+++++.+ +.|.+|+.....      .    .....+..++..+.|                 
T Consensus        18 p~~~~w~~--~~~~~~~l~a~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (393)
T 4gq1_A           18 PYTTTWCS--QSPSCSNLLAIGHD-TGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV   94 (393)
T ss_dssp             EEEEEECT--TSGGGTTEEEEEES-SEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred             CeEEEEeC--CCCCCCCEEEEECC-CCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence            34444433  45666666666666 778888753211      0    011112333444433                 


Q ss_pred             ---CCCCcEEEEeccCCCEEEEEcCCCcce-----eeeccccCCeeEEEEcc--------CCcEEEEeeCCCcEEEeeCc
Q 012996           89 ---NSHGTYIAGGGQSGDIYMWEVASGRLL-----KKWHAHYRAVTCLVFSE--------DGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        89 ---~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~s~~~dg~i~vwd~~  152 (451)
                         ++++.+|++|+.|++|+|||+.+++..     ..+.+|.+.|++++|+|        |+++|++|+.|++|+|||+.
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence               445678999999999999999887543     34689999999999998        78999999999999999994


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-----------------
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-----------------  215 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------  215 (451)
                      +           ......+..|...+.+++|+|++. .+|++++.|++|++||+++++.....                 
T Consensus       175 ~-----------~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          175 D-----------EGPILAGYPLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             T-----------TEEEEEEEECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             C-----------CceeeeecCCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence            4           334556677899999999999763 58999999999999999887644322                 


Q ss_pred             ---------ecccceeEEEEC-CCCCEEEEEeCCCcEEEEEccCCCCCCCCCC----------ceeeeeeccCCcceeEE
Q 012996          216 ---------VFPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYG----------MHIIGSLSDHSKAVTCL  275 (451)
Q Consensus       216 ---------~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~  275 (451)
                               .+...+.++.|+ |++..+++++.|+.+++||+...........          .........+...+..+
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred             cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence                     134567788886 7999999999999999999976542111000          00111222223333333


Q ss_pred             EEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          276 AYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       276 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      .+.+  +.++++|+.||+|++||+.+++++..+..|..+|.+++|+|||++||+++.+|. .+|+
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv-~lvr  386 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV-LLTR  386 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE-EEEE
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEE
Confidence            3333  346677889999999999999999999999999999999999999999987775 4444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=257.23  Aligned_cols=269  Identities=10%  Similarity=0.125  Sum_probs=219.2

Q ss_pred             EEEeecCCCCCCeEEEECcc-Ccee-eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC
Q 012996            3 LLIASSSVADTGIGCWDLES-GAEQ-LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~   80 (451)
                      .+|++|+ .||.|+|||+.+ +..+ ..+..   |...|.+++  |+|+++++++++.| |.|++||+.++.......|.
T Consensus        55 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~  127 (368)
T 3mmy_A           55 NFLIAGS-WANDVRCWEVQDSGQTIPKAQQM---HTGPVLDVC--WSDDGSKVFTASCD-KTAKMWDLSSNQAIQIAQHD  127 (368)
T ss_dssp             EEEEEEE-TTSEEEEEEECTTSCEEEEEEEE---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECS
T ss_pred             eEEEEEC-CCCcEEEEEcCCCCceeEEEecc---ccCCEEEEE--ECcCCCEEEEEcCC-CcEEEEEcCCCCceeecccc
Confidence            6899999 999999999997 5554 45554   557788888  99999999999988 99999999999888778899


Q ss_pred             CCeeEEEE--CCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           81 EPIKPIAA--NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        81 ~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      ..|.+++|  +|++++|++++.||.|++||+.+++.+..+..|. .+.++.+.  +..+++++.++.+.+|++...    
T Consensus       128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~----  200 (368)
T 3mmy_A          128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQ----  200 (368)
T ss_dssp             SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSS----
T ss_pred             CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccc----
Confidence            99999999  9999999999999999999999999998887664 56666666  457889999999999999652    


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCC--eeEEEEeeCCCcEEEEEcCCC---ceeeeee-ccc------------c
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS------------V  220 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~------------~  220 (451)
                           ..........+...+.++.+.+...  ...+++++.||.|++||++..   .....+. +..            .
T Consensus       201 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (368)
T 3mmy_A          201 -----PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA  275 (368)
T ss_dssp             -----CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC
T ss_pred             -----cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc
Confidence                 1112222233445556666665542  244999999999999999887   4444544 322            6


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      |.+++|+|++++|++|+.||.|++||+.+.         ..+..+.+|...|++++|+| +.+|++++.|+..+.|++.+
T Consensus       276 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          276 VNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             eEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            999999999999999999999999999876         56778889999999999999 99999999998666665443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-34  Score=258.36  Aligned_cols=266  Identities=7%  Similarity=0.019  Sum_probs=203.6

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC---------CCccee
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA---------SGRLLK  116 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~  116 (451)
                      +.+++..+++++.| |.|++||+.+++...... ...|.++.|+|+   +++++.|+.|++|+..         +++.+.
T Consensus        44 ~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCED-GALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            55678888888888 899999988776544433 466778888887   8888888888888654         445444


Q ss_pred             eec-cccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc-cCCcCceeEEEEeecCCeeEE
Q 012996          117 KWH-AHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       117 ~~~-~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      .+. +|.+.|.+++|+|  ++++|++++.||.|++||++++           ...... ..|...+.+++|+|++  .++
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------~~~~~~~~~~~~~i~~~~~~pdg--~~l  185 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-----------SQYIVHSAKSDVEYSSGVLHKDS--LLL  185 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-----------CEEEEECCCSSCCCCEEEECTTS--CEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-----------cEEEEEecCCCCceEEEEECCCC--CEE
Confidence            443 6778999999999  9999999999999999999652           223333 3456689999999988  899


Q ss_pred             EEeeCCCcEEEEEcCCCcee-eeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          193 VSASEDRTCKVWSLLKGRLL-RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~~~~-~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      ++|+.||.|++||+++++.+ ..+.  |...|.+++|+|++.+|++++ ++.|++||++......      .+..+..|.
T Consensus       186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~------~~~~~~~~~  258 (343)
T 3lrv_A          186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL------AYPTYTIPE  258 (343)
T ss_dssp             EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB------SSCCCBC--
T ss_pred             EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce------eeccccccc
Confidence            99999999999999999877 5554  689999999999999999999 5599999999865321      122222344


Q ss_pred             ccee--EEEEec-CCEEEEEcC-CCcEEEEeCCCCceEEEeecCCCCeeEEEEEe---cCceeeeccCCCCccccccC
Q 012996          270 KAVT--CLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR---RPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       270 ~~v~--~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ..+.  +++|+| +.+|++++. |+.|++|++.........    .++..+.|+|   +...+++++.||.+.++-..
T Consensus       259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            4444  699999 999999988 999999998765543333    5778888998   88899999999998887544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-33  Score=260.24  Aligned_cols=237  Identities=14%  Similarity=0.149  Sum_probs=196.1

Q ss_pred             ceEEecceEeeccCcc-cCCCCCCccEEEEECC--CCceeeee---cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           38 GLACVGQRFLASSQLR-EQPSASSGSILYWSWS--KPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l-~~~~~d~g~i~vw~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      .|.+++  |+|++++| ++++.| |.|++||+.  ++......   .+...|.+++|+|++++|++|+.+|.|++|++.+
T Consensus       104 ~v~~~~--~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          104 YIRNLR--LTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS  180 (450)
T ss_dssp             CEEEEE--ECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             ceEEEE--EcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence            688898  99999997 677676 999999998  65544332   4678999999999999999999999999999988


Q ss_pred             Cccee----eeccccCCeeEEEEccC---CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEE
Q 012996          112 GRLLK----KWHAHYRAVTCLVFSED---GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVI  183 (451)
Q Consensus       112 ~~~~~----~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~  183 (451)
                      +....    .+.+|...|.+++|+|+   +++|++|+.|+.|++||+.+           ...+.. +.+|...|.+++|
T Consensus       181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-----------~~~~~~~~~~h~~~v~~~~~  249 (450)
T 2vdu_B          181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-----------CFIVDKWLFGHKHFVSSICC  249 (450)
T ss_dssp             CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-----------TTCEEEECCCCSSCEEEEEE
T ss_pred             cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-----------CceeeeeecCCCCceEEEEE
Confidence            87554    77889999999999999   99999999999999999954           233444 5689999999999


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec--------------------------ccceeEEEECCCCCEEEEEe
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--------------------------PSVIDAIALDPAEHVFYAGS  237 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~i~~~~~~~~~~~l~~~~  237 (451)
                      + ++  .+|++++.|+.|++||+.+++.+..+..                          ...+.+++|+|+++++++++
T Consensus       250 s-d~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          250 G-KD--YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             C-ST--TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             C-CC--CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            9 77  8999999999999999999998877752                          24688999999999999999


Q ss_pred             -CCCcEEEEEc--cCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcC-------CCcEEEEeCC
Q 012996          238 -RDGSIYIAAL--NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE-------DGMVRVWDPI  298 (451)
Q Consensus       238 -~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~-------dg~i~iwd~~  298 (451)
                       .++.|++|++  ....      ....+..+..| ..|.+++|+|+.++++.+.       +..|.+|.+.
T Consensus       327 ~~d~~i~iw~~~~~~~~------~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          327 EATKCIIILEMSEKQKG------DLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             TTCSEEEEEEECSSSTT------CEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CCCCeEEEEEeccCCCC------ceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence             8999999999  3321      12556667777 8899999999545555433       4558888754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.2e-33  Score=260.01  Aligned_cols=255  Identities=14%  Similarity=0.211  Sum_probs=208.0

Q ss_pred             CCCCceEEecceEeec-cCcccCCCCCCccEEEEECCC----------Cc-eeeeecCCCCeeEEEECCCCc-EEEEecc
Q 012996           34 SPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSK----------PQ-VEVKSLPAEPIKPIAANSHGT-YIAGGGQ  100 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~----------~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  100 (451)
                      .|...|.+++  |+|+ +.++++++.+ |.|++|++.+          .. ......|...|.+++|+|++. +|++|+.
T Consensus       126 ~h~~~v~~l~--~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          126 NHEGEVNRAR--YMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EESSCCSEEE--EETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             cCCCcEEEEE--ECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            3556777788  9997 6788888877 9999999875          22 223356888999999999988 9999999


Q ss_pred             CCCEEEEEcCCCcc-------eeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996          101 SGDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT  172 (451)
Q Consensus       101 dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  172 (451)
                      ||.|++|++.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||+++.        .....+..+.
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~--------~~~~~~~~~~  274 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN--------NTSKPSHTVD  274 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS--------CSSSCSEEEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC--------CCCcceeEee
Confidence            99999999987432       456678999999999999 7889999999999999999752        1124555667


Q ss_pred             CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEECCCCC-EEEEEeCCCcEEEEEccC
Q 012996          173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       173 ~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  249 (451)
                      .|...|++++|++++. .++++|+.||.|++||+++ +..+..+. |...|.+++|+|++. +|++++.||.|++||+..
T Consensus       275 ~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             cCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            8999999999999873 4799999999999999998 45666666 889999999999885 699999999999999987


Q ss_pred             CCCCCC-----CCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCC
Q 012996          250 ESPSTS-----SYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       250 ~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~  300 (451)
                      ......     ......+..+.+|...|++++|+| +. +|++++.||.|+||++...
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            431110     001245667788999999999999 77 8999999999999998653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.2e-32  Score=250.95  Aligned_cols=266  Identities=14%  Similarity=0.111  Sum_probs=219.5

Q ss_pred             cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE
Q 012996           52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF  130 (451)
Q Consensus        52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  130 (451)
                      .+++++.+ +.|++||+.+++......+...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|
T Consensus         4 l~vs~~~d-~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~   81 (391)
T 1l0q_A            4 AYIANSES-DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (391)
T ss_dssp             EEEEETTT-TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEEcCCC-CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence            34555555 99999999988877666666779999999999977 677789999999999999988887655 8999999


Q ss_pred             ccCCcEEEE-eeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCC
Q 012996          131 SEDGSFLIS-GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK  208 (451)
Q Consensus       131 ~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~  208 (451)
                      +|++++|+. ++.++.|++||+.+           ...+..+. +...+.+++|++++  +.+ ++++.++.|++||+.+
T Consensus        82 spdg~~l~~~~~~~~~v~v~d~~~-----------~~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           82 SPDGKQVYVTNMASSTLSVIDTTS-----------NTVAGTVK-TGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTT-----------TEEEEEEE-CSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCEEEEEECCCCEEEEEECCC-----------CeEEEEEe-CCCCcceEEECCCC--CEEEEEeCCCCEEEEEECCC
Confidence            999998764 45679999999955           22333344 34467899999988  555 7888899999999999


Q ss_pred             CceeeeeecccceeEEEECCCCCEE-EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE
Q 012996          209 GRLLRNIVFPSVIDAIALDPAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (451)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~  286 (451)
                      ++.+..+.....+.+++|+|+++.+ ++++.++.|++||+.+.         .....+ .+...+.+++|+| +.+|+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~~~-~~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTV-KVEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEE-ECSSEEEEEEECTTSSEEEEE
T ss_pred             CcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---------eEEEEE-ecCCCccceEECCCCCEEEEE
Confidence            9998888877788999999999887 56678899999999875         333333 3566889999999 8888888


Q ss_pred             c---CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccccCCCCC
Q 012996          287 S---EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       287 ~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~~~~~~~  344 (451)
                      +   .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.+++|+.....+
T Consensus       218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence            7   68999999999999999988765 57899999999987 6778999999999886544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=9.9e-32  Score=244.52  Aligned_cols=254  Identities=12%  Similarity=0.115  Sum_probs=188.8

Q ss_pred             EEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE-EEeeC
Q 012996           65 YWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSE  142 (451)
Q Consensus        65 vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~  142 (451)
                      +|++.+.... ....|...|.+++|+|||++|++|+.+| +++|++.+++......  ...+..+.+.++++.+ ++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECC
Confidence            3444443332 2355789999999999999999998775 7899998877665443  2357888998888777 56788


Q ss_pred             CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeeecccce
Q 012996          143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIVFPSVI  221 (451)
Q Consensus       143 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~i  221 (451)
                      |+.|++||+.+           ...+..+. |...|.++.++++    .++++ .++.|++||+.++ +.+..+..  ..
T Consensus        80 d~~v~iWd~~~-----------~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~  140 (355)
T 3vu4_A           80 KEVVHIWDDVK-----------KQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR--FG  140 (355)
T ss_dssp             TTEEEEEETTT-----------TEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE--EE
T ss_pred             ccEEEEEECCC-----------CcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc--CC
Confidence            89999999955           33344444 6678999998765    33333 4789999999988 77666655  44


Q ss_pred             eEEEECCCCCEEEE--EeCCCcEEEEEccCCCCCCC------CCCcee-eeeeccCCcceeEEEEec-CCEEEEEcCCCc
Q 012996          222 DAIALDPAEHVFYA--GSRDGSIYIAALNAESPSTS------SYGMHI-IGSLSDHSKAVTCLAYST-GDLLISGSEDGM  291 (451)
Q Consensus       222 ~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~------~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~  291 (451)
                      ..+++++  .++++  |+.+|.|++||+.+......      .....+ +..+.+|...|++++|+| +.+|++|+.||+
T Consensus       141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence            4566666  55655  68999999999987531100      000122 667889999999999999 999999999998


Q ss_pred             -EEEEeCCCCceEEEee-c-CCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          292 -VRVWDPITHNIVRMFR-L-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       292 -i~iwd~~~~~~~~~~~-~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                       |++||+.+++++.++. + |.++|.+++|+|++++|++++.|+.+++|++...
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence             9999999999999998 5 9999999999999999999999999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=249.27  Aligned_cols=238  Identities=9%  Similarity=-0.054  Sum_probs=190.1

Q ss_pred             EECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccc
Q 012996           87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHL  166 (451)
Q Consensus        87 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  166 (451)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+.|++|+.........  .....
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~--~~~~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD--SKTNK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE--TTTCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee--cCCcc
Confidence            345678999999999999999999999888876  567888899988   99999999999998853110000  01122


Q ss_pred             ceec-ccCCcCceeEEEEee--cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCc
Q 012996          167 YLHS-FTGHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       167 ~~~~-~~~~~~~i~~i~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                      .+.. ..+|...|.+++|+|  ++  .++++++.||.|++||+++++......  +...+.+++|+|++.+|++|+.||.
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNT--EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---C--CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCC--CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence            1222 236778999999999  77  899999999999999999998866553  4567999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCee--
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVN--  314 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--  314 (451)
                      |++||+++..        .....+.. |..+|++++|+| +.+|++++ |+.|++||+++++.+..+..   |..++.  
T Consensus       194 i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          194 LDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             EEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             EEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence            9999999874        22245666 999999999999 99999999 55999999999887766554   444554  


Q ss_pred             EEEEEecCceeeeccC-CCCccccccCCC
Q 012996          315 NILVVRRPLYLNLGSF-SNPHTSSRRHGS  342 (451)
Q Consensus       315 ~l~~s~~~~~l~~~s~-d~~i~iw~~~~~  342 (451)
                      +++|+|+|++|++++. |+.+++|++...
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            5999999999999988 999999998643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=1.3e-30  Score=249.06  Aligned_cols=322  Identities=13%  Similarity=0.090  Sum_probs=250.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEEC--CCCceeeeecCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW--SKPQVEVKSLPA   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~--~~~~~~~~~~~~   80 (451)
                      .++++++ .|++|.+||..+++.+.++..+..    +..++  |+|+|+++++++.+ +.|.+||+  .+.+......+.
T Consensus       150 ~~~vs~~-~d~~V~v~D~~t~~~~~~i~~g~~----~~~v~--~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          150 LFSVTLR-DAGQIALVDGDSKKIVKVIDTGYA----VHISR--MSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             EEEEEEG-GGTEEEEEETTTCCEEEEEECSTT----EEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEEc-CCCeEEEEECCCceEEEEEecCcc----cceEE--ECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC
Confidence            4677788 899999999999999998874322    66777  99999999999998 99999999  777766555566


Q ss_pred             CCeeEEEECC----CCcEEEEecc-CCCEEEEEcCCCcceeeecc----------ccC-CeeEEEEccCCc-EEEEeeCC
Q 012996           81 EPIKPIAANS----HGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HYR-AVTCLVFSEDGS-FLISGSED  143 (451)
Q Consensus        81 ~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~-~l~s~~~d  143 (451)
                      ..+..++|+|    +|+++++++. ++.|.+||..+++++..+..          |.. .+..+.++|++. ++++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            7889999999    9999999884 89999999999998888754          222 788999999665 45677778


Q ss_pred             CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCCCceeeeee-----c
Q 012996          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLRNIV-----F  217 (451)
Q Consensus       144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~-----~  217 (451)
                      +.|.+||+.+.         ....+..+ .+...+.++.|+|++  ++++ ++..+++|.+||..+++++..+.     |
T Consensus       302 g~i~vvd~~~~---------~~l~~~~i-~~~~~~~~~~~spdg--~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph  369 (543)
T 1nir_A          302 GKVLLVNYKDI---------DNLTVTSI-GAAPFLHDGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH  369 (543)
T ss_dssp             TEEEEEECTTS---------SSCEEEEE-ECCSSCCCEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred             CeEEEEEecCC---------CcceeEEe-ccCcCccCceECCCC--CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence            99999999652         11111122 245667789999998  6655 45568999999999999888776     3


Q ss_pred             ccceeEEEECCC-CCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-------
Q 012996          218 PSVIDAIALDPA-EHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-------  287 (451)
Q Consensus       218 ~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-------  287 (451)
                      +.....+ ++|+ +..++++. .|+.|.+||+.+...  ....++.+.++..|...+..++++| +++|++++       
T Consensus       370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~  446 (543)
T 1nir_A          370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR  446 (543)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred             CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcc
Confidence            3333333 4676 56666665 589999999987321  1222477889999999999999999 99999987       


Q ss_pred             CCCcEEEEeCCCCceE-EEe--------ecCCCCeeEEEEEecCceeeec-----cCCCCccccccCCCCCCCc
Q 012996          288 EDGMVRVWDPITHNIV-RMF--------RLAKGPVNNILVVRRPLYLNLG-----SFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       288 ~dg~i~iwd~~~~~~~-~~~--------~~~~~~v~~l~~s~~~~~l~~~-----s~d~~i~iw~~~~~~~~~~  347 (451)
                      .+++|.+||+.+++.. ..+        ..+...+..+.|+|+|+.|+++     +.|+.|.+||..+.++...
T Consensus       447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  520 (543)
T 1nir_A          447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  520 (543)
T ss_dssp             HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence            2779999999999887 444        3456789999999999999865     3579999999987765433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=4.8e-30  Score=240.52  Aligned_cols=269  Identities=17%  Similarity=0.159  Sum_probs=219.4

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeec--CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LP   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~   79 (451)
                      .++++++ .|+.|++||+.+++....+..  ..+|...+.+++  |++++.++++++.+ +.|++||+.++...... .+
T Consensus       135 ~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~s~~~d-~~v~~~d~~~~~~~~~~~~~  210 (433)
T 3bws_A          135 RLAIPLL-EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS--IPEHNELWVSQMQA-NAVHVFDLKTLAYKATVDLT  210 (433)
T ss_dssp             EEEEEBT-TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE--EGGGTEEEEEEGGG-TEEEEEETTTCCEEEEEECS
T ss_pred             eEEEEeC-CCCeEEEEECCCCeEeeecCcccccccCCceeEEE--EcCCCEEEEEECCC-CEEEEEECCCceEEEEEcCC
Confidence            4677787 899999999999988764332  224667888888  99999999998887 99999999987765443 46


Q ss_pred             CCCeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee--------CCCcEEEee
Q 012996           80 AEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--------EDGCVRIWS  150 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--------~dg~i~vwd  150 (451)
                      ...+.+++|+|++++++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++++++        .||.|++||
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d  289 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS  289 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence            78999999999999885 5557999999999999888877654 4589999999999999888        488999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      +.++           ..... ..|...+.+++|++++. .++++++.++.|++||+.+++....+.+...+.+++|+|++
T Consensus       290 ~~~~-----------~~~~~-~~~~~~~~~~~~~~~g~-~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg  356 (433)
T 3bws_A          290 MDKE-----------KLIDT-IGPPGNKRHIVSGNTEN-KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG  356 (433)
T ss_dssp             TTTT-----------EEEEE-EEEEECEEEEEECSSTT-EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             CCCC-----------cEEee-ccCCCCcceEEECCCCC-EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence            9652           22222 24566788999999873 45677789999999999999999888888899999999999


Q ss_pred             CEEEEEeC---------------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-CCcEE
Q 012996          231 HVFYAGSR---------------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGMVR  293 (451)
Q Consensus       231 ~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~-dg~i~  293 (451)
                      +++++++.               ||.|++||+.+.         +.+..+.. ...+.+++|+| +.+|++++. |+.|+
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCC---------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence            99998876               579999999875         44445544 45789999999 888887765 99999


Q ss_pred             EEeCCC
Q 012996          294 VWDPIT  299 (451)
Q Consensus       294 iwd~~~  299 (451)
                      +|++..
T Consensus       427 v~~~~~  432 (433)
T 3bws_A          427 VYRRDG  432 (433)
T ss_dssp             EEEETT
T ss_pred             EEEecC
Confidence            999763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.5e-31  Score=246.77  Aligned_cols=239  Identities=13%  Similarity=0.114  Sum_probs=174.5

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceee------eecCCCCeeEEEECC--------CCcEEEEeccCCCEEEEEcCC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEV------KSLPAEPIKPIAANS--------HGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~------~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      +.+++.++++++.| ++|++||...+....      ...|.+.|.+++|+|        |+++||+|+.|++|+|||+.+
T Consensus        97 ~~~~~~~las~~~d-~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           97 SPVYSLFLACVCQD-NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             CCEEEEEEEEEETT-SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             cCCCCCEEEEEeCC-CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            56778889999888 999999998876532      235889999999998        889999999999999999999


Q ss_pred             CcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhc--------------ccccceecccCCcC
Q 012996          112 GRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQR--------------ASHLYLHSFTGHTL  176 (451)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  176 (451)
                      +..+..+..|..+|.+++|+|++ .+|++++.||+|++||+++.........              ..........+|..
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            88888888899999999999977 4799999999999999977533221110              00111123357888


Q ss_pred             ceeEEEEe-ecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccc------------------eeEEEECC--CCCEEE
Q 012996          177 RITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSV------------------IDAIALDP--AEHVFY  234 (451)
Q Consensus       177 ~i~~i~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~------------------i~~~~~~~--~~~~l~  234 (451)
                      .+.++.|. +++  ..+++++.|+++++||+..++....+. +...                  .....++|  ++.+++
T Consensus       256 ~v~~v~~~~~dg--~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (393)
T 4gq1_A          256 SLANVRWIGSDG--SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT  333 (393)
T ss_dssp             SCSEEEEETTTT--CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred             cceeeeeecCCC--CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence            99999987 566  899999999999999998776554442 2111                  12233443  344667


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      +|+.||.|++||+.++.         .......|..+|++++|+| |++||+++.+| +.+|.+
T Consensus       334 sgs~Dg~V~lwd~~~~~---------~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          334 AHSQHGLIQLINTYEKD---------SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EETTTTEEEEEETTCTT---------CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EECCCCEEEEEECCCCc---------EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            78899999999998863         3445667889999999999 99999998777 555543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=5.7e-30  Score=237.57  Aligned_cols=282  Identities=15%  Similarity=0.056  Sum_probs=218.3

Q ss_pred             CCC----CeEEEEC--ccCceee--eeecCCCCCCceEEecceEee--------------ccCcccCCCCC--C---ccE
Q 012996           11 ADT----GIGCWDL--ESGAEQL--RYKSCASPPHGLACVGQRFLA--------------SSQLREQPSAS--S---GSI   63 (451)
Q Consensus        11 ~dg----~i~vwd~--~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--------------~~~~l~~~~~d--~---g~i   63 (451)
                      .||    .|+|||+  .+++.+.  .+.++.   ..+..++  +.+              .+..++.++.+  +   +.|
T Consensus        87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i  161 (415)
T 2hqs_A           87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAG--HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYEL  161 (415)
T ss_dssp             TTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHH--HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEE
T ss_pred             CCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHH--HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceE
Confidence            467    8999999  9998773  355543   3344444  333              14455554443  2   699


Q ss_pred             EEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC---CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-E
Q 012996           64 LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-S  139 (451)
Q Consensus        64 ~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s  139 (451)
                      ++||++.........|...+.+++|+|+|++|++++.++   .|++||+.+++.. .+..|...+.+++|+|||+.|+ +
T Consensus       162 ~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~  240 (415)
T 2hqs_A          162 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFA  240 (415)
T ss_dssp             EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEE
Confidence            999998766666666788999999999999999998875   8999999988765 4667888999999999999887 6


Q ss_pred             eeCCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCceeee
Q 012996          140 GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRN  214 (451)
Q Consensus       140 ~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~  214 (451)
                      ++.++.  |.+||+.++            ....+..|...+.+++|+|++  +.|++++. ++  .|++||+.+++....
T Consensus       241 ~~~~g~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~spdg--~~l~~~s~~~g~~~i~~~d~~~~~~~~l  306 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASG------------QIRQVTDGRSNNTEPTWFPDS--QNLAFTSDQAGRPQVYKVNINGGAPQRI  306 (415)
T ss_dssp             ECTTSSCEEEEEETTTC------------CEEECCCCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred             EecCCCceEEEEECCCC------------CEEeCcCCCCcccceEECCCC--CEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence            666655  999998541            124566788899999999998  77777765 45  678889988775443


Q ss_pred             eecccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996          215 IVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      ..+...+.+++|+|+|++|++++.+   ..|++||+.++.          ...+..|. .+.+++|+| +++|++++.++
T Consensus       307 ~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~----------~~~l~~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          307 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLSSTF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------EEECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC----------EEEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            3466788899999999999988764   589999998764          23444554 899999999 99999988877


Q ss_pred             ---cEEEEeCCCCceEEEeecCCCCeeEEEEEecCce
Q 012996          291 ---MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY  324 (451)
Q Consensus       291 ---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~  324 (451)
                         .|++||+. +.....+..|.+.|.+++|+|...+
T Consensus       376 ~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          376 MGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             TEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             CccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccc
Confidence               79999986 6667889999999999999996543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=4.9e-28  Score=231.26  Aligned_cols=276  Identities=11%  Similarity=0.058  Sum_probs=219.8

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc--CCCcceeeeccccC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV--ASGRLLKKWHAHYR  123 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~  123 (451)
                      |+|++..+++.+.+ ++|.+||..++++.........+.+++|+|+|++|++++.|+.|.+||+  .+++.+..+. +..
T Consensus       145 ~~p~~~~~vs~~~d-~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~  222 (543)
T 1nir_A          145 LDLPNLFSVTLRDA-GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI  222 (543)
T ss_dssp             CCGGGEEEEEEGGG-TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred             cCCCCEEEEEEcCC-CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence            78888888777776 9999999999887655443344899999999999999999999999999  8888888887 455


Q ss_pred             CeeEEEEcc----CCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccC----------CcC-ceeEEEEeecC
Q 012996          124 AVTCLVFSE----DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTG----------HTL-RITDIVIGYGG  187 (451)
Q Consensus       124 ~v~~~~~~~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~i~~~~~~  187 (451)
                      .+..++|+|    ||+++++++. +++|.+||..++           .++..+..          |.. .+.++.+++++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~  291 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  291 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-----------ccceeecccCcccCccccccCCceEEEEECCCC
Confidence            679999999    9999998885 899999998552           22333222          223 78899999876


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCceee--eeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                      . .++++...++.|.+||+.+.+.+.  .+.+...+..++|+|++++|++++ .++.|.+||..++         +.+..
T Consensus       292 ~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---------~l~~~  361 (543)
T 1nir_A          292 P-EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---------RLSAL  361 (543)
T ss_dssp             S-EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---------EEEEE
T ss_pred             C-EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---------eEEEe
Confidence            4 678888899999999998876544  555666788999999999877665 5889999999986         33444


Q ss_pred             ecc----CCcceeEEEEec--CCEEEEEc-CCCcEEEEeCCC-------CceEEEeecCCCCeeEEEEEecCceeeecc-
Q 012996          265 LSD----HSKAVTCLAYST--GDLLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGS-  329 (451)
Q Consensus       265 ~~~----~~~~v~~~~~~~--~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-  329 (451)
                      +..    |......+ ++|  +.+++++. .|++|.+||+.+       +++++++..|.+.+..+.|+|++++|++++ 
T Consensus       362 i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          362 VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred             eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence            432    54434333 456  55667765 689999999998       899999999988899999999999999987 


Q ss_pred             ------CCCCccccccCCCCCC
Q 012996          330 ------FSNPHTSSRRHGSQLP  345 (451)
Q Consensus       330 ------~d~~i~iw~~~~~~~~  345 (451)
                            .+++|.+||+.+....
T Consensus       441 ~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          441 FNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCCCcccCceEEEEECCCCCCC
Confidence                  3789999999877654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.3e-27  Score=239.24  Aligned_cols=310  Identities=11%  Similarity=0.083  Sum_probs=229.4

Q ss_pred             EEeecCCC-CC-----CeEEEECccCceeeeeecCCCCC---------------------CceEEecceEeeccCcccCC
Q 012996            4 LIASSSVA-DT-----GIGCWDLESGAEQLRYKSCASPP---------------------HGLACVGQRFLASSQLREQP   56 (451)
Q Consensus         4 ~l~s~~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~   56 (451)
                      +|++++ . |+     .|.+||+.+++....+..+...+                     ..+..++  |+|+|++|+++
T Consensus        50 ~la~~~-~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~  126 (741)
T 2ecf_A           50 RVTFLR-GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ--WSPDAQRLLFP  126 (741)
T ss_dssp             EEEEEE-CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE--ECTTSSEEEEE
T ss_pred             EEEEEe-ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE--ECCCCCEEEEE
Confidence            467776 5 77     89999999998776664432210                     2355666  99999999988


Q ss_pred             CCCCccEEEEECCCC---ceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC---------
Q 012996           57 SASSGSILYWSWSKP---QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA---------  124 (451)
Q Consensus        57 ~~d~g~i~vw~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------  124 (451)
                      +.  +.|.+||+.++   .......+...+.+++|+|||++|+.++ ++.|++||+.+++.......+...         
T Consensus       127 ~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v  203 (741)
T 2ecf_A          127 LG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFV  203 (741)
T ss_dssp             ET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHH
T ss_pred             eC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecccccee
Confidence            86  89999999987   6555555678899999999999999877 468999999888766554444332         


Q ss_pred             -------eeEEEEccCCcEEEEeeCCC---------------------------------cEEEeeCcc-hhhhhhhhcc
Q 012996          125 -------VTCLVFSEDGSFLISGSEDG---------------------------------CVRIWSLLT-VFEECESQRA  163 (451)
Q Consensus       125 -------v~~~~~~~~~~~l~s~~~dg---------------------------------~i~vwd~~~-~~~~~~~~~~  163 (451)
                             +.++.|+|||++|++++.|+                                 .|.+||+.+ +..       
T Consensus       204 ~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-------  276 (741)
T 2ecf_A          204 ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-------  276 (741)
T ss_dssp             HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-------
T ss_pred             eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-------
Confidence                   47899999999999988765                                 788888843 210       


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeC-----CCcEEEEEcCCCceeeeeeccc-----ceeEEEECCCCCEE
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLKGRLLRNIVFPS-----VIDAIALDPAEHVF  233 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l  233 (451)
                        ..+.....|...+.+++| |++  +.|++++.     +..|++||+.+++....+....     .+..++|+|+|+++
T Consensus       277 --~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          277 --QWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             --EEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             --EEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence              111111257788999999 998  67776543     5689999999998776665322     45689999999999


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE-EEec-CCEEE-EEcCCC--cEEEEeCCC-CceEEEee
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL-AYST-GDLLI-SGSEDG--MVRVWDPIT-HNIVRMFR  307 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~l~-s~~~dg--~i~iwd~~~-~~~~~~~~  307 (451)
                      ++++.+|.+.+|.++...        . ...+..|...|..+ .|+| ++.|+ +++.++  .++||++.. +.....+.
T Consensus       352 ~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKG--------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             EEECTTSSCEEEEECSSS--------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             EEecCCCccEEEEEcCCC--------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            999999988888776432        3 45666777888887 5999 77665 555555  899999864 55566676


Q ss_pred             cCCCCeeEEEEEecCceeeeccCC----CCccccccCC
Q 012996          308 LAKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHG  341 (451)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~s~d----~~i~iw~~~~  341 (451)
                      . ...+..++|+|||++|+....+    ..+.+|+..+
T Consensus       423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            5 6678999999999998765433    3466666543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.1e-27  Score=208.24  Aligned_cols=211  Identities=15%  Similarity=0.074  Sum_probs=158.9

Q ss_pred             CceEEecceEeec----cCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec--cCCCEEEEEc-
Q 012996           37 HGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG--QSGDIYMWEV-  109 (451)
Q Consensus        37 ~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~-  109 (451)
                      ..|..++  |+|+    ++.+++++.   .+.+|++                     ++++++.+++  .|+.|++|++ 
T Consensus       112 ~~v~sla--~spd~~~~~~~l~s~g~---~~~v~~l---------------------~~g~lv~ss~~g~d~~V~~~~~s  165 (356)
T 2w18_A          112 REIRALF--CSSDDESEKQVLLKSGN---IKAVLGL---------------------TKRRLVSSSGTLSDQQVEVMTFA  165 (356)
T ss_dssp             EEEEEEC--C------CCEEEEEEEE---EEEEEEE---------------------TTTEEEEEESSSTTCEEEEEEEC
T ss_pred             cceEEEE--ECCCccccccEEEeCCC---eEEEEec---------------------CCCcEEEecccCCCCcEEEEEEC
Confidence            4667777  8888    888887653   4666742                     4566666643  5889999999 


Q ss_pred             CCCcceeeeccccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc---CceeEEEE
Q 012996          110 ASGRLLKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---LRITDIVI  183 (451)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~i~~  183 (451)
                      .+++.+..+..|...+..++|++   ++.+|++++.|++|+|||+.+           ...++++.+|.   ..+.+++|
T Consensus       166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-----------Gk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-----------GQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-----------CCEEEEEECCC---CCCEEEEE
T ss_pred             CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-----------CcEEEEEcCCCcceeeeEEEEE
Confidence            55888888889999999999999   779999999999999999955           45666676543   36777789


Q ss_pred             eecCCeeEE------------EEeeCCCcEEEEEcCCCceeeeee------cccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996          184 GYGGVSATI------------VSASEDRTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (451)
Q Consensus       184 ~~~~~~~~l------------~s~~~d~~i~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (451)
                      +|++  .++            ++|+.|++|++||..+++.+..+.      +...+.  ..+.++.++++|+.|++|++|
T Consensus       235 SpdG--~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIW  310 (356)
T 2w18_A          235 SEMG--LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIW  310 (356)
T ss_dssp             EETT--EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEE
T ss_pred             CCCC--CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEE
Confidence            9988  554            678899999999999998876542      122222  223347789999999999999


Q ss_pred             EccCCCCCCCCCCceeeeeeccCCccee-EEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          246 ALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      |+.++         +.+.++.+|...+. +++|+| +.+|++|+.|++|+|||+
T Consensus       311 Dl~tG---------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          311 DLLLG---------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTTC---------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ECCCC---------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99987         56778888887655 689999 999999999999999995

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.96  E-value=1.4e-27  Score=237.79  Aligned_cols=309  Identities=13%  Similarity=0.085  Sum_probs=220.0

Q ss_pred             EeecCCCCCCeEEEECccCcee-eeeecCCC--------------CCCceEEecceEeeccCcccCCCCCCccEEEEECC
Q 012996            5 IASSSVADTGIGCWDLESGAEQ-LRYKSCAS--------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWS   69 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~-~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~   69 (451)
                      +++++ .|+ | +||+.+|+.+ ..+..+..              +...+.+++  |+|+ +.++.+. + +.|.+||+.
T Consensus        38 ~~~~~-~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~--~spd-~~~~~~~-~-~~i~~~d~~  109 (706)
T 2z3z_A           38 YVFIE-GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTL--DAGR-GLVVLFT-Q-GGLVGFDML  109 (706)
T ss_dssp             EEEEE-TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEE--ETTT-TEEEEEE-T-TEEEEEETT
T ss_pred             EEEEe-CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEE--ECCC-CeEEEEE-C-CEEEEEECC
Confidence            34445 566 8 9999999873 33332211              114578888  9999 6555553 3 899999999


Q ss_pred             CCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-----CcceeeeccccCC--------------eeEEEE
Q 012996           70 KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-----GRLLKKWHAHYRA--------------VTCLVF  130 (451)
Q Consensus        70 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~  130 (451)
                      +++......+...+.+++|+|||++|+++ .++.|++||+.+     ++.......+...              +.++.|
T Consensus       110 ~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~  188 (706)
T 2z3z_A          110 ARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW  188 (706)
T ss_dssp             TTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred             CCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence            88776666677789999999999999985 679999999998     7766554444433              488999


Q ss_pred             ccCCcEEEEee---------------------------------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996          131 SEDGSFLISGS---------------------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (451)
Q Consensus       131 ~~~~~~l~s~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (451)
                      +|||++|++++                                 .+..|.+||+.++.         ...+.....|...
T Consensus       189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~---------~~~~~~~~~~~~~  259 (706)
T 2z3z_A          189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK---------TVYLQTGEPKEKF  259 (706)
T ss_dssp             CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE---------EEECCCCSCTTCE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc---------eEeeccCCCCcee
Confidence            99999999987                                 44679999996521         1111112356778


Q ss_pred             eeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee---ccc---ceeEEEECC--CCCEEEEEeCCCcEEE
Q 012996          178 ITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV---FPS---VIDAIALDP--AEHVFYAGSRDGSIYI  244 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i  244 (451)
                      +.+++|+|++  +.|++++.++     .|++||+.+++....+.   ...   .+.+++|+|  ++++++++..+|.+++
T Consensus       260 ~~~~~~spdg--~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l  337 (706)
T 2z3z_A          260 LTNLSWSPDE--NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL  337 (706)
T ss_dssp             EEEEEECTTS--SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred             EeeEEEECCC--CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence            9999999998  7888877765     89999999984333332   221   246789999  9999999999999999


Q ss_pred             EEccCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CCEEEEE-cCCC----cEEEEeCCCCceEEEeecCCCCeeEEE
Q 012996          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLISG-SEDG----MVRVWDPITHNIVRMFRLAKGPVNNIL  317 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~  317 (451)
                      |.+....        ..+..+..|...+.. ++|+| ++.|+.+ +.++    .|..||+.+++ +..+. |...+.+++
T Consensus       338 ~~~~~~~--------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~  407 (706)
T 2z3z_A          338 YLYDTTG--------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQ  407 (706)
T ss_dssp             EEEETTS--------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEE
T ss_pred             EEEECCC--------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEE
Confidence            9886321        335566677777877 79999 7766554 4444    67777877765 44444 567799999


Q ss_pred             EEecCceeeeccCC----CCccccccCCCC
Q 012996          318 VVRRPLYLNLGSFS----NPHTSSRRHGSQ  343 (451)
Q Consensus       318 ~s~~~~~l~~~s~d----~~i~iw~~~~~~  343 (451)
                      |+|||++|+.++.+    +.+.+|+..+..
T Consensus       408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            99999998776443    458999987654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.2e-27  Score=222.03  Aligned_cols=276  Identities=12%  Similarity=0.022  Sum_probs=210.0

Q ss_pred             ceEEecceEeeccCccc-CCC---CCCc----cEEEEEC--CCCceee---eecCCCCeeEEEECC--------------
Q 012996           38 GLACVGQRFLASSQLRE-QPS---ASSG----SILYWSW--SKPQVEV---KSLPAEPIKPIAANS--------------   90 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~-~~~---~d~g----~i~vw~~--~~~~~~~---~~~~~~~v~~~~~~~--------------   90 (451)
                      .+...+  |.+.|..++ +++   ..+|    .|++||+  .+++...   ...|...+..+++++              
T Consensus        64 ~~~~~~--w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           64 EVQPAA--WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GCCHHH--HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcCHHH--HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            344445  777776554 443   1237    8999999  7777542   234666677777664              


Q ss_pred             CCcEEEEeccC------CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC---cEEEeeCcchhhhhhhh
Q 012996           91 HGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQ  161 (451)
Q Consensus        91 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~  161 (451)
                      .+..++.++.+      +.|++||+. +.....+..|...+.+++|+|||++|++++.++   .|++||+.++       
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-------  213 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------  213 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-------
Confidence            15556655554      789999986 555677888999999999999999999999875   9999999652       


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCc--EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                          .. ..+..|...+.+++|+|++  +.|+ +++.++.  |++||+.+++......+...+.+++|+|+++.|++++.
T Consensus       214 ----~~-~~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~  286 (415)
T 2hqs_A          214 ----AV-RQVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD  286 (415)
T ss_dssp             ----CE-EEEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             ----cE-EEeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC
Confidence                12 2456678889999999998  6666 6666665  99999998877554457788999999999999988876


Q ss_pred             -CC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---CcEEEEeCCCCceEEEeecCCC
Q 012996          239 -DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKG  311 (451)
Q Consensus       239 -dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~  311 (451)
                       ++  .|++||+.++.          ...+..|...+.+++|+| +++|++++.+   +.|.+||+.+++.. .+..+. 
T Consensus       287 ~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-  354 (415)
T 2hqs_A          287 QAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-  354 (415)
T ss_dssp             TTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-
T ss_pred             CCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-
Confidence             45  67777887653          233455677899999999 9999888764   58999999988774 455554 


Q ss_pred             CeeEEEEEecCceeeeccCCC---CccccccCCC
Q 012996          312 PVNNILVVRRPLYLNLGSFSN---PHTSSRRHGS  342 (451)
Q Consensus       312 ~v~~l~~s~~~~~l~~~s~d~---~i~iw~~~~~  342 (451)
                      .+.+++|+|+|++|++++.++   .+.+|+..+.
T Consensus       355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            899999999999999998877   6999998754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=9.4e-27  Score=206.19  Aligned_cols=251  Identities=16%  Similarity=0.076  Sum_probs=195.6

Q ss_pred             CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-Ccceeeeccc-cCCeeEEEEccCCcEE
Q 012996           60 SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH-YRAVTCLVFSEDGSFL  137 (451)
Q Consensus        60 ~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l  137 (451)
                      ++.|++||+.+++......|...|.+++|+|++++|++++ ++.|++||+.+ ++.......| ...+.+++|+|++++|
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l   99 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY   99 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred             ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence            3999999999988776677888999999999999999976 78999999998 8777666665 4678999999999999


Q ss_pred             EEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEc--CCCcee
Q 012996          138 ISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSL--LKGRLL  212 (451)
Q Consensus       138 ~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~--~~~~~~  212 (451)
                      ++++  .++...+|.+..         ... ....+..+. .+..++|+|++  ..++ +++.++.+++|++  .++...
T Consensus       100 ~~~~~~~~~~~~l~~~~~---------~~~-~~~~~~~~~-~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPS---------TGG-TPRLMTKNL-PSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             EEEECTTTSSCEEEEEET---------TCC-CCEECCSSS-SEEEEEECTTS--SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EEEEeCCCCcceEEEEEC---------CCC-ceEEeecCC-CccceEECCCC--CEEEEEECCCCceEEEEEECCCCcce
Confidence            9998  445666666532         111 122333333 48889999988  5555 7888999999985  444444


Q ss_pred             eeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC-
Q 012996          213 RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED-  289 (451)
Q Consensus       213 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d-  289 (451)
                      ....+...+.+++|+|+++.|++++ .++.+.+|++....        .....+..|...+.+++|+| +++|++++.+ 
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence            4444677899999999999888766 58999999987432        23456667888999999999 9999888766 


Q ss_pred             ----------CcEEEEeCCCCce--EEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          290 ----------GMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       290 ----------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                                +.|.+||+.+++.  +..+..|...+..++|+|++++|++++.+.
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                      5699999988765  444557888999999999999998887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.6e-25  Score=202.88  Aligned_cols=296  Identities=11%  Similarity=0.124  Sum_probs=201.0

Q ss_pred             EEEeecCCCCCCeEEEECc-cCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceee--
Q 012996            3 LLIASSSVADTGIGCWDLE-SGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV--   75 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~--   75 (451)
                      .++++++ .|+.|.+||+. ++.  .+..+.    +...+.+++  |+|+|+++++++.+++.|.+|+++  ++....  
T Consensus         6 ~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~   78 (343)
T 1ri6_A            6 TVYIASP-ESQQIHVWNLNHEGALTLTQVVD----VPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA   78 (343)
T ss_dssp             EEEEEEG-GGTEEEEEEECTTSCEEEEEEEE----CSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCC-CCCeEEEEEECCCCcEEEeeeEe----cCCCCceEE--ECCCCCEEEEeecCCCeEEEEEecCCCCceeecc
Confidence            3445546 79999999985 342  233332    334455566  999999998888876999999997  444332  


Q ss_pred             eecCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcC---CCcceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEee
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVA---SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWS  150 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd  150 (451)
                      .......+..++|+|++++|++++. ++.|.+||+.   ..+....+..+ ..+.+++|+|+++++++++ .++.|.+||
T Consensus        79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           79 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFT  157 (343)
T ss_dssp             EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence            2223348899999999998866654 7889999994   44445555433 4588999999999888877 889999999


Q ss_pred             Ccchhhhhhhhccccccee--ccc-CCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCC--Cce--eeeee-c----
Q 012996          151 LLTVFEECESQRASHLYLH--SFT-GHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLK--GRL--LRNIV-F----  217 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~--~~~--~~~~~-~----  217 (451)
                      +.+..        ......  ... .....+.+++|+|++  .+++ ++..++.|.+||+..  ++.  ...+. .    
T Consensus       158 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pdg--~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          158 VSDDG--------HLVAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             ECTTS--------CEEEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             ecCCC--------ceeeecccccccCCCCCcceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence            95410        001111  112 233467889999988  6554 555889999999953  432  22222 1    


Q ss_pred             --ccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-CCCcE
Q 012996          218 --PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMV  292 (451)
Q Consensus       218 --~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~dg~i  292 (451)
                        ...+..++|+|++++|+++. .++.|.+||+.....     ....+..+..+.. +.+++|+| +++|++++ .++.|
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v  301 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-----VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHI  301 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-----CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEE
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-----ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeE
Confidence              23466899999999887554 789999999983210     0234444544444 88999999 88888777 68999


Q ss_pred             EEE--eCCCCc--eEEEeecCCCCeeEEEEEecCc
Q 012996          293 RVW--DPITHN--IVRMFRLAKGPVNNILVVRRPL  323 (451)
Q Consensus       293 ~iw--d~~~~~--~~~~~~~~~~~v~~l~~s~~~~  323 (451)
                      .+|  |..+++  .+..+.. .....+++|.|+.+
T Consensus       302 ~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          302 SVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             EEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            999  544664  3444544 24567888888654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.3e-25  Score=202.45  Aligned_cols=275  Identities=8%  Similarity=-0.011  Sum_probs=198.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-eeee-cCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKS-LPA   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-~~~~-~~~   80 (451)
                      .++++++ .++.|.+||+.+++....+..+   .... .++  |+|+|+++++++..++.|.+||..++.. .... .+.
T Consensus        11 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A           11 FGIVVEQ-HLRRISFFSTDTLEILNQITLG---YDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             EEEEEEG-GGTEEEEEETTTCCEEEEEECC---CCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EEEEEec-CCCeEEEEeCcccceeeeEEcc---CCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            4567777 8999999999999998877643   2334 677  9999998877777559999999988875 3333 344


Q ss_pred             CCeeEEEECCCCcEEEEeccCC---CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe-eCCCc-EEEeeCcchh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG-SEDGC-VRIWSLLTVF  155 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~-i~vwd~~~~~  155 (451)
                      .+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+ ....+++|+|+|++++++ ..++. |.+|++....
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            4444499999999999665553   8999999999888877644 456899999999865554 55588 9999985411


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeE-EEEeeCCCcEEEEEcCCCce---eeeeecccceeEEEECCCCC
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASEDRTCKVWSLLKGRL---LRNIVFPSVIDAIALDPAEH  231 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~  231 (451)
                      ...     ... ...+ .......+++|+|++  ++ ++++..++.|.+||+.+++.   +..+.....+..++|+|+++
T Consensus       163 ~~~-----~~~-~~~~-~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  233 (331)
T 3u4y_A          163 VLF-----DTG-QEFI-SGGTRPFNITFTPDG--NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS  233 (331)
T ss_dssp             CEE-----EEE-EEEE-CSSSSEEEEEECTTS--SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred             cEe-----ecC-Cccc-cCCCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence            000     000 1111 234457899999998  54 45555789999999999988   77777778889999999999


Q ss_pred             EEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccC----Cc---ceeEEEEec-CCEEEEE-cCCCcEEEEeCCCCc
Q 012996          232 VFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDH----SK---AVTCLAYST-GDLLISG-SEDGMVRVWDPITHN  301 (451)
Q Consensus       232 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~---~v~~~~~~~-~~~l~s~-~~dg~i~iwd~~~~~  301 (451)
                      ++++++ .++.|.+||+.++..       ..+..+..+    ..   ....++|+| +++|+++ ..++.|.+||+....
T Consensus       234 ~l~v~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQLSGTL-------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEECSSEEEEEEEETTTTEE-------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEEEcCCCEEEEEECCCCce-------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            877665 477899999987642       112222111    22   235689999 8877555 556799999987644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=1.7e-25  Score=202.09  Aligned_cols=274  Identities=12%  Similarity=0.033  Sum_probs=201.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC-
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE-   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~-   81 (451)
                      .+|++++ .++.|.+||+.+++.+..+...... ..+..++  |+|+|+.+++++..++.|.+||..+++......... 
T Consensus         2 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPA-RPDKLVVIDTEKMAVDKVITIADAG-PTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECTTCT-TCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcC-CCCeEEEEECCCCcEEEEEEcCCCC-CCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            4678888 8999999999999998887643210 0234455  999998876665555999999998887654433222 


Q ss_pred             -----CeeEEEECCCCcEEEEec------------cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC
Q 012996           82 -----PIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG  144 (451)
Q Consensus        82 -----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  144 (451)
                           .+.+++|+|+|+++++++            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~  154 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR  154 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence                 688999999999998875            578999999998888777754 4567889999999988887  68


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCC-----------------------c
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR-----------------------T  200 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~-----------------------~  200 (451)
                      .|.+||+.++.           ....+..+.. ...+.|++++  ..++..+ .++                       .
T Consensus       155 ~i~~~d~~~~~-----------~~~~~~~~~~-~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T 1pby_B          155 DLHVMDPEAGT-----------LVEDKPIQSW-EAETYAQPDV--LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             SEEEEETTTTE-----------EEEEECSTTT-TTTTBCCCBC--CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             eEEEEECCCCc-----------Eeeeeecccc-CCCceeCCCc--cEEeeeccCCCceeeeeeccccccccccccccccc
Confidence            99999996532           2222222210 0112566665  3333332 222                       4


Q ss_pred             EEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996          201 CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (451)
Q Consensus       201 i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  277 (451)
                      |.+||+.+++.. .+.   +...+.+++|+|++++++++  ++.|++||+.+.         +.+..+.. ...+.+++|
T Consensus       221 v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~  287 (337)
T 1pby_B          221 LLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------ASIKRVPL-PHSYYSVNV  287 (337)
T ss_dssp             EEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------EEEEEEEC-SSCCCEEEE
T ss_pred             eEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---------cCcceecC-CCceeeEEE
Confidence            789999988765 332   44567889999999999988  799999999875         33334432 356789999


Q ss_pred             ec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996          278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       278 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                      +| +++|++++.++.|.+||+.+++.+..+..+.
T Consensus       288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            99 9999999999999999999999998887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=6.7e-26  Score=205.31  Aligned_cols=275  Identities=13%  Similarity=0.132  Sum_probs=191.2

Q ss_pred             CcccCCCCCCccEEEEECC-CCc--eeeeecCCCCeeEEEECCCCcEEEEeccC-CCEEEEEcC--CCc--ceeeecccc
Q 012996           51 QLREQPSASSGSILYWSWS-KPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVA--SGR--LLKKWHAHY  122 (451)
Q Consensus        51 ~~l~~~~~d~g~i~vw~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~--~~~~~~~~~  122 (451)
                      +++++++..++.|.+|+++ ++.  ......+...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+..+.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            3444442333999999985 332  22334467789999999999988888776 899999997  554  334444443


Q ss_pred             CCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCc
Q 012996          123 RAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT  200 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~  200 (451)
                       .+.+++|+|++++|++++. ++.|.+||+..+        ........+.. ...+.+++|++++  +++++++ .++.
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~-~~~~~~~~~s~dg--~~l~~~~~~~~~  152 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG--------LPVGVVDVVEG-LDGCHSANISPDN--RTLWVPALKQDR  152 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETT--------EEEEEEEEECC-CTTBCCCEECTTS--SEEEEEEGGGTE
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC--------ccccccccccC-CCCceEEEECCCC--CEEEEecCCCCE
Confidence             7899999999998876665 888999998421        01122233333 3357889999988  6677666 8999


Q ss_pred             EEEEEcCC-Cceee----eee--cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeecc---CC
Q 012996          201 CKVWSLLK-GRLLR----NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD---HS  269 (451)
Q Consensus       201 i~iwd~~~-~~~~~----~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~  269 (451)
                      |.+||+.+ ++...    .+.  ....+..++|+|+++++++++ .++.|.+|++........  .......+..   ..
T Consensus       153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPENFSDT  230 (343)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTTCCSC
T ss_pred             EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcccccc
Confidence            99999987 65432    122  345788999999999776655 789999999964221000  0011111111   13


Q ss_pred             cceeEEEEec-CCEEE-EEcCCCcEEEEeCC----CCceEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccC
Q 012996          270 KAVTCLAYST-GDLLI-SGSEDGMVRVWDPI----THNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH  340 (451)
Q Consensus       270 ~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~  340 (451)
                      ..+..++|+| +++|+ ++..++.|.+||+.    ..+.+..+..+.. +.+++|+|+|++|++++ .++.+.+|+++
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            4677899999 87776 55579999999998    3345556665544 89999999999887776 68999999765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=4.5e-26  Score=227.60  Aligned_cols=299  Identities=11%  Similarity=0.045  Sum_probs=210.3

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--------CccEEEEECCCCceeee
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVK   76 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~g~i~vw~~~~~~~~~~   76 (451)
                      +++ + .||+|++||+.+++....+..+......+..++  |+|+|++|++++.+        ++.+.+||+.++.....
T Consensus        31 ~~~-~-~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  106 (723)
T 1xfd_A           31 IYR-E-QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL  106 (723)
T ss_dssp             CCC-C-SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC
T ss_pred             EEE-e-CCCCEEEEECCCCcEEEEeccccccccccceEE--ECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec
Confidence            344 5 799999999999998877765543323477777  99999999988653        26889999998875322


Q ss_pred             ec---CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe------------------eEEEEccCCc
Q 012996           77 SL---PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV------------------TCLVFSEDGS  135 (451)
Q Consensus        77 ~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~  135 (451)
                      ..   +...+..++|||||+.||.++. +.|++||+.+++.......+...+                  .++.|+|||+
T Consensus       107 ~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~  185 (723)
T 1xfd_A          107 DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT  185 (723)
T ss_dssp             CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred             cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence            22   2334899999999999999776 789999999888776665544433                  7899999999


Q ss_pred             EEEEeeCCC----------------------------------cEEEeeCcchhhhhhhhcccccceeccc------CCc
Q 012996          136 FLISGSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFT------GHT  175 (451)
Q Consensus       136 ~l~s~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~~  175 (451)
                      .|++++.|+                                  .|.+||+.++.           ....+.      .+.
T Consensus       186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-----------~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-----------HDLEMMPPDDPRMRE  254 (723)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-----------CCEECCCCCCGGGSS
T ss_pred             EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-----------eeEEeeCCccCCCcc
Confidence            999887653                                  68888885521           112222      246


Q ss_pred             CceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCCceeeeee--cccce----eEEEECCCCCEEEE--EeCCC---
Q 012996          176 LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRLLRNIV--FPSVI----DAIALDPAEHVFYA--GSRDG---  240 (451)
Q Consensus       176 ~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~--~~~~i----~~~~~~~~~~~l~~--~~~dg---  240 (451)
                      ..+.+++|+|++  +++++.+.    +..|++||+.+++....+.  +...+    ..++|+|+|+.|+.  +..++   
T Consensus       255 ~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          255 YYITMVKWATST--KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             EEEEEEEESSSS--EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             ceeEEEEEeCCC--eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence            788999999998  77766543    3579999999988766553  22333    37899999997775  45666   


Q ss_pred             ---cEEEEEc-cCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CCEEEEEcCC---CcEEEEeCCCCc--eEEEeec-
Q 012996          241 ---SIYIAAL-NAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLISGSED---GMVRVWDPITHN--IVRMFRL-  308 (451)
Q Consensus       241 ---~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~-  308 (451)
                         .|++||. .....       .....+..+...+.. ++|+| ++.|+..+.+   +.+++|++....  ....+.. 
T Consensus       333 ~~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  405 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD  405 (723)
T ss_dssp             CEEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred             ceeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence               4666763 33210       002233333344444 69999 8888766554   789999986432  3444443 


Q ss_pred             --CCCCeeEEEEEecCceeeec
Q 012996          309 --AKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       309 --~~~~v~~l~~s~~~~~l~~~  328 (451)
                        |...+..++|+|||++|+..
T Consensus       406 ~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          406 LVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SSSSCCCCEEEECTTSSEEEEE
T ss_pred             ccCCCCeEEEEECCCCCEEEEE
Confidence              56779999999999988764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=7.5e-25  Score=199.30  Aligned_cols=269  Identities=10%  Similarity=0.085  Sum_probs=209.4

Q ss_pred             ceEEecceEeeccCcccCCCCC------CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEE-EeccCCCEEEEEcC
Q 012996           38 GLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVA  110 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d------~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~  110 (451)
                      .+..++  |+|+++.+++++.+      ++.|.+||..+++..........+..++|+|+|++++ ++..++.|.+||..
T Consensus        42 ~~~~~~--~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           42 GAYEMA--YSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SEEEEE--EETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CccceE--ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            455666  99999988887754      4799999999888766655556789999999999654 45557899999999


Q ss_pred             CCcceeeeccccCC---------eeEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996          111 SGRLLKKWHAHYRA---------VTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT  179 (451)
Q Consensus       111 ~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  179 (451)
                      +++.+..+..+...         +.++.|+|+++++++++  .++.|.+||+.+           ......+..+...+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-----------IKLKTAIQNTGKMST  188 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-----------TEEEEEECCCCTTCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-----------CceEEEecCCCCccc
Confidence            99988877654432         68899999999877766  478899999954           333444444555678


Q ss_pred             EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-----ccceeEEEECCCCCEEEEEeCC-CcEEEEEccCCCCC
Q 012996          180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRD-GSIYIAALNAESPS  253 (451)
Q Consensus       180 ~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~  253 (451)
                      +++|++++  +.+++++.++.|.+||+.+++....+..     ...+..++|+|+++++++++.+ +.|.+||..+..  
T Consensus       189 ~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--  264 (353)
T 3vgz_A          189 GLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN--  264 (353)
T ss_dssp             CCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--
T ss_pred             eEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--
Confidence            89999998  7888888999999999999988877763     3457789999999988777654 899999998763  


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec-CCEEE-EEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d  331 (451)
                             .+..+..+.  ...++|+| +++++ +...++.|.+||..+++.+..+..+ ..+.+++|+|+|++|+++..+
T Consensus       265 -------~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          265 -------ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -------EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             -------EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence                   233333322  25799999 77554 4457999999999999999888764 468999999999988777665


Q ss_pred             CC
Q 012996          332 NP  333 (451)
Q Consensus       332 ~~  333 (451)
                      +.
T Consensus       335 ~~  336 (353)
T 3vgz_A          335 KS  336 (353)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=2e-25  Score=230.87  Aligned_cols=316  Identities=11%  Similarity=0.066  Sum_probs=235.6

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC-----CccEEEEECCCCceeeeecC
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVEVKSLP   79 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~g~i~vw~~~~~~~~~~~~~   79 (451)
                      ||.++  ++.|.+||+.+++.. .+..   |...+.+++  |||||+.||.++.+     +..|.+|+..++.......|
T Consensus        27 iaf~~--~~~l~~~~~~gg~~~-~lt~---~~~~v~~~~--~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~   98 (1045)
T 1k32_A           27 IIFVC--CDDLWEHDLKSGSTR-KIVS---NLGVINNAR--FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF   98 (1045)
T ss_dssp             EEEEE--TTEEEEEETTTCCEE-EEEC---SSSEEEEEE--ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC
T ss_pred             EEEEE--CCcEEEEECCCCcEE-Eeee---CCCcccCeE--ECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccC
Confidence            55555  368999999877653 4443   557788888  99999999987542     25899999998876655667


Q ss_pred             CCCe-------eEEEECCCCcEEEEeccC------CCEEEEEcCCCcce-------------------------------
Q 012996           80 AEPI-------KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL-------------------------------  115 (451)
Q Consensus        80 ~~~v-------~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~-------------------------------  115 (451)
                      ...+       ..++|+|||+++++++.+      ..|++|++.++...                               
T Consensus        99 ~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~  178 (1045)
T 1k32_A           99 SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKG  178 (1045)
T ss_dssp             CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTT
T ss_pred             CCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCcccccc
Confidence            7777       899999999977777644      35888887655422                               


Q ss_pred             ------------------eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh-hhh----------ccccc
Q 012996          116 ------------------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC-ESQ----------RASHL  166 (451)
Q Consensus       116 ------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~----------~~~~~  166 (451)
                                        ..+.+|...+.++.|+++ .++++++.|+.+.+|.+....... ...          .....
T Consensus       179 ~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~  257 (1045)
T 1k32_A          179 YRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGR  257 (1045)
T ss_dssp             CCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSS
T ss_pred             ccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCC
Confidence                              112356777888999887 677788888999999764211000 000          00000


Q ss_pred             ------------------ceecccC-----------CcCceeEEEEe-ecCCeeEEEEeeCCCcEEEEEcCCCceeeeee
Q 012996          167 ------------------YLHSFTG-----------HTLRITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV  216 (451)
Q Consensus       167 ------------------~~~~~~~-----------~~~~i~~i~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  216 (451)
                                        .+..+..           |...+.+++|+ |++  ..+++++ ++.+.+|++..+.......
T Consensus       258 ~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG--~~la~~~-~~~i~~~~~~~~~~~~~~~  334 (1045)
T 1k32_A          258 RILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG--DLIAFVS-RGQAFIQDVSGTYVLKVPE  334 (1045)
T ss_dssp             CEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG--GCEEEEE-TTEEEEECTTSSBEEECSC
T ss_pred             EEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCC--CEEEEEE-cCEEEEEcCCCCceEEccC
Confidence                              0111121           23368899999 988  7777777 7899999998877655444


Q ss_pred             ccc-ceeEEEECCCCCEEEEEeCCCcEE-EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996          217 FPS-VIDAIALDPAEHVFYAGSRDGSIY-IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR  293 (451)
Q Consensus       217 ~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~  293 (451)
                      +.. .+..++|+ +++.|+.++.++.+. +|++....          ...+.+|...+..++|+| +++|++++.++.|+
T Consensus       335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~  403 (1045)
T 1k32_A          335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM  403 (1045)
T ss_dssp             CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----------ceEecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence            566 89999999 999999999888888 99987653          223447888999999999 99999999999999


Q ss_pred             EEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC----------CccccccCCCC
Q 012996          294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN----------PHTSSRRHGSQ  343 (451)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~----------~i~iw~~~~~~  343 (451)
                      +||+.+++....+..|.+.+.+++|||||++|++++.++          .+++|+..++.
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            999999998888878999999999999999999887654          89999987653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=7.1e-25  Score=197.64  Aligned_cols=276  Identities=12%  Similarity=0.120  Sum_probs=196.5

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcc-eeeecccc
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRL-LKKWHAHY  122 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~~~  122 (451)
                      |.+++..++++...++.|.+||..+++..... .+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+.
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            55666665555444499999999988775443 345556 9999999997666555 88999999999988 77777777


Q ss_pred             CCeeEEEEccCCcEEEEeeCCC---cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996          123 RAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR  199 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~  199 (451)
                      .+..+++|+|++++++++..++   .|.+||+.++           ..+..+.. .....+++|+|++. .++++...++
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~spdg~-~l~~~~~~~~  150 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-----------KFISTIPI-PYDAVGIAISPNGN-GLILIDRSSA  150 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-----------EEEEEEEC-CTTEEEEEECTTSS-CEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCC-----------CeEEEEEC-CCCccceEECCCCC-EEEEEecCCC
Confidence            7666699999999999665553   8999999552           23333333 33458999999983 3455556668


Q ss_pred             c-EEEEEcCCCcee-----eeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          200 T-CKVWSLLKGRLL-----RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       200 ~-i~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      . |.+|++.....+     ..+.....+..++|+|+++++++++ .++.|++||+.+...      ...+..+. +...+
T Consensus       151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~------~~~~~~~~-~~~~~  223 (331)
T 3u4y_A          151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN------ITLLNAVG-TNNLP  223 (331)
T ss_dssp             TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS------CEEEEEEE-CSSCC
T ss_pred             ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc------cceeeecc-CCCCC
Confidence            8 999998764332     2223456689999999999766655 688999999987642      01134444 34677


Q ss_pred             eEEEEec-CCEEEEEc-CCCcEEEEeCCCCce--EEEeecC----CCC---eeEEEEEecCceeeec-cCCCCccccccC
Q 012996          273 TCLAYST-GDLLISGS-EDGMVRVWDPITHNI--VRMFRLA----KGP---VNNILVVRRPLYLNLG-SFSNPHTSSRRH  340 (451)
Q Consensus       273 ~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~----~~~---v~~l~~s~~~~~l~~~-s~d~~i~iw~~~  340 (451)
                      ..++|+| ++++++++ .++.|.+||+.+++.  +..+..+    ..+   ...++|+|+|++|+++ ..++.+.+|++.
T Consensus       224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            8999999 88666554 578899999999877  4444332    222   3568999999988655 456799999987


Q ss_pred             CC
Q 012996          341 GS  342 (451)
Q Consensus       341 ~~  342 (451)
                      +.
T Consensus       304 ~~  305 (331)
T 3u4y_A          304 GK  305 (331)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=7.1e-26  Score=226.75  Aligned_cols=276  Identities=9%  Similarity=0.001  Sum_probs=208.8

Q ss_pred             CCceEEecceEeeccCcccCCCC-CCc-----cEEEEECCCCceeeeec-CC------------------------CCee
Q 012996           36 PHGLACVGQRFLASSQLREQPSA-SSG-----SILYWSWSKPQVEVKSL-PA------------------------EPIK   84 (451)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~-d~g-----~i~vw~~~~~~~~~~~~-~~------------------------~~v~   84 (451)
                      ...+..++  |+|+|++|++++. + +     .|.+||+.+++...... +.                        ..|.
T Consensus        36 ~~~~~~~~--~SpdG~~la~~~~~d-~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPK--VAPDGSRVTFLRGKD-SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEE--ECTTSSEEEEEECCS-SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCce--EecCCCEEEEEeccC-CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            45577788  9999999999988 5 6     89999999887544332 21                        2388


Q ss_pred             EEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           85 PIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      +++|+|||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|+.++. +.|.+||+.++.       
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~-------  183 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR-------  183 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE-------
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC-------
Confidence            9999999999999876 899999998873  45566778889999999999999998874 589999996521       


Q ss_pred             ccccceecccCCcC----------------ceeEEEEeecCCeeEEEEeeCCC---------------------------
Q 012996          163 ASHLYLHSFTGHTL----------------RITDIVIGYGGVSATIVSASEDR---------------------------  199 (451)
Q Consensus       163 ~~~~~~~~~~~~~~----------------~i~~i~~~~~~~~~~l~s~~~d~---------------------------  199 (451)
                          .......+..                .+.++.|+|++  ++|++++.|+                           
T Consensus       184 ----~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g  257 (741)
T 2ecf_A          184 ----QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG  257 (741)
T ss_dssp             ----EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred             ----EEEeccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence                1111122222                24778999998  7888877665                           


Q ss_pred             ------cEEEEEcCC-Cceeeee---ecccceeEEEECCCCCEEEEEeC-----CCcEEEEEccCCCCCCCCCCceeeee
Q 012996          200 ------TCKVWSLLK-GRLLRNI---VFPSVIDAIALDPAEHVFYAGSR-----DGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       200 ------~i~iwd~~~-~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                            .|.+||+.+ ++.....   .+...+..++| |+|+.|++++.     +..|++||+.++.         ....
T Consensus       258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---------~~~~  327 (741)
T 2ecf_A          258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---------QRVL  327 (741)
T ss_dssp             SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------EEEE
T ss_pred             CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------eEEE
Confidence                  789999988 7654433   25577899999 99999987754     5689999998764         2223


Q ss_pred             eccCCc----ceeEEEEec-CCEEEEEcCCCcEEEEeCC-CCceEEEeecCCCCeeEE-EEEecCceee-eccCCC--Cc
Q 012996          265 LSDHSK----AVTCLAYST-GDLLISGSEDGMVRVWDPI-THNIVRMFRLAKGPVNNI-LVVRRPLYLN-LGSFSN--PH  334 (451)
Q Consensus       265 ~~~~~~----~v~~~~~~~-~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~s~~~~~l~-~~s~d~--~i  334 (451)
                      +..+..    .+..++|+| ++++++++.||.+.||.+. ++. ...+..|...|..+ .|+|+++.|+ +++.++  .+
T Consensus       328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~  406 (741)
T 2ecf_A          328 AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES  406 (741)
T ss_dssp             EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred             EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence            333332    456899999 8899999999988888765 445 77888888888887 5999998775 455555  88


Q ss_pred             cccccC
Q 012996          335 TSSRRH  340 (451)
Q Consensus       335 ~iw~~~  340 (451)
                      ++|++.
T Consensus       407 ~l~~~~  412 (741)
T 2ecf_A          407 QIYAVP  412 (741)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=1.1e-25  Score=203.24  Aligned_cols=265  Identities=12%  Similarity=0.074  Sum_probs=201.8

Q ss_pred             cccCCCCCCccEEEEECCCCceeeeecCCC---CeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeecc-c----c
Q 012996           52 LREQPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHA-H----Y  122 (451)
Q Consensus        52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~-~----~  122 (451)
                      ++++++.+ +.|.+||..+++.........   .+..++|+|+++++ +++..++.|.+||+.+++.+..+.. +    .
T Consensus         3 ~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcCCC-CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            45666666 999999999887765554444   68999999999766 5556678999999999988776653 2    2


Q ss_pred             CCeeEEEEccCCcEEEEee------------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          123 RAVTCLVFSEDGSFLISGS------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      ..+.+++|+|+++++++++            .++.|.+||+.+.           .....+.. ...+.+++|++++  +
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~s~dg--~  147 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----------SRRKAFEA-PRQITMLAWARDG--S  147 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-----------EEEEEEEC-CSSCCCEEECTTS--S
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-----------cEEEEEeC-CCCcceeEECCCC--C
Confidence            3678899999999988886            5799999999542           22233332 3456788999988  6


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCC------------------------cEEEEE
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG------------------------SIYIAA  246 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d  246 (451)
                      +++++  ++.|.+||+.+++....+........+.|+|++..+++.+..+                        .|.+||
T Consensus       148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  225 (337)
T 1pby_B          148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence            67766  6889999999998887776433222347899988776655433                        468899


Q ss_pred             ccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee
Q 012996          247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL  325 (451)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  325 (451)
                      +.+...       . ...+..+...+.+++|+| +++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|
T Consensus       226 ~~~~~~-------~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          226 LETGEM-------A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV  294 (337)
T ss_dssp             TTTCCE-------E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred             CCCCCc-------e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence            887641       1 333445667888999999 8888888  799999999999988888754 567899999999999


Q ss_pred             eeccCCCCccccccCCCCC
Q 012996          326 NLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       326 ~~~s~d~~i~iw~~~~~~~  344 (451)
                      ++++.++.+.+|+..+...
T Consensus       295 ~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          295 WLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEESBSSEEEEEETTTCCE
T ss_pred             EEEcCCCcEEEEECcCCcE
Confidence            9999999999999886543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=7.5e-25  Score=193.92  Aligned_cols=253  Identities=13%  Similarity=0.075  Sum_probs=189.6

Q ss_pred             cCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-Cceeeee-cC-CCCee
Q 012996            8 SSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKS-LP-AEPIK   84 (451)
Q Consensus         8 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-~~~~~~~-~~-~~~v~   84 (451)
                      ++ .|+.|.+||+.+++..... .   +...+.+++  |+|+|+++++++ + +.|.+||+.+ +...... .+ ...+.
T Consensus        18 ~~-~~~~i~~~d~~~~~~~~~~-~---~~~~v~~~~--~spdg~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           18 GS-MRSSIEIFNIRTRKMRVVW-Q---TPELFEAPN--WSPDGKYLLLNS-E-GLLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             CC-CCEEEEEEETTTTEEEEEE-E---ESSCCEEEE--ECTTSSEEEEEE-T-TEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             CC-cceeEEEEeCCCCceeeec-c---CCcceEeeE--ECCCCCEEEEEc-C-CeEEEEeCCCCCCceEecccccccccc
Confidence            45 7899999999988876443 3   346677888  999999999876 4 8999999988 6654433 22 46789


Q ss_pred             EEEECCCCcEEEEec--cCCCEEEE--EcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhh
Q 012996           85 PIAANSHGTYIAGGG--QSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        85 ~~~~~~~~~~l~~~~--~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      +++|+|++++|++++  .++...||  +..++. ...+..+ ..+..++|+|++++|+ +++.++.+.+|++..      
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~------  160 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI------  160 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET------
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC------
Confidence            999999999999988  33455555  444444 3444433 3488999999999877 788899999999742      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcC-CCceeeeee-cccceeEEEECCCCCEEEEE
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL-KGRLLRNIV-FPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~  236 (451)
                          .......+..|...+.+++|+|++  ..++.++ .++.+++|++. .+.....+. +...+.+++|+|++++|+++
T Consensus       161 ----~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          161 ----DSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             ----TTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             ----CCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence                112234556678889999999988  6666555 68999999886 444444444 66788999999999999888


Q ss_pred             eCC-----------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996          237 SRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       237 ~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      +.+           +.|++||+.+...       ..+..+.+|...+.+++|+| +.+|++++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            765           5699999987642       34555567888999999999 99888887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.7e-25  Score=221.02  Aligned_cols=275  Identities=8%  Similarity=-0.004  Sum_probs=194.7

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC-CC---CeeEEEECCCCcEEEEeccC---------CCEE
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AE---PIKPIAANSHGTYIAGGGQS---------GDIY  105 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~l~~~~~d---------g~i~  105 (451)
                      ...++  |+|+|+++++ +.+ |+|++||..+++......+ ..   .|.+++|||||++|++++.+         +.++
T Consensus        19 ~~~~~--~spdg~~~~~-~~d-g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           19 DPEAK--WISDTEFIYR-EQK-GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCC--BSSSSCBCCC-CSS-SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccE--EcCCCcEEEE-eCC-CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            34455  9999997766 555 9999999988876544433 22   49999999999999998764         6788


Q ss_pred             EEEcCCCcc--eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC-------
Q 012996          106 MWEVASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-------  176 (451)
Q Consensus       106 iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  176 (451)
                      +||+.+++.  +.....|...+..++|+|||+.|+.++. +.|.+||+.++.           .......+..       
T Consensus        95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-----------~~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-----------AIRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-----------CEEEECCCBTTTEEEEE
T ss_pred             EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-----------eEEEecCCCCCceECcc
Confidence            999998876  2222345556889999999999999886 799999996521           1222222222       


Q ss_pred             -----------ceeEEEEeecCCeeEEEEeeCCC----------------------------------cEEEEEcCCCce
Q 012996          177 -----------RITDIVIGYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRL  211 (451)
Q Consensus       177 -----------~i~~i~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~  211 (451)
                                 .+.+++|+|++  +.|++++.++                                  .|++||+.+++.
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~  240 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH  240 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred             cceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence                       23789999998  7888776543                                  799999998875


Q ss_pred             eeeeec-------ccceeEEEECCCCCEEEEEeC----CCcEEEEEccCCCCCCCCCCceeeeeec-cCCcce----eEE
Q 012996          212 LRNIVF-------PSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAV----TCL  275 (451)
Q Consensus       212 ~~~~~~-------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v----~~~  275 (451)
                      ...+..       ...+..++|+|+|+++++...    +..|++||+.++.         ....+. .+...+    ..+
T Consensus       241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---------CTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---------EEEEEEEECSSCCCCCCCCC
T ss_pred             eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---------ceEEEEeccCCEEeccCCCc
Confidence            444442       467899999999998877653    3579999998764         122222 233433    378


Q ss_pred             EEec-CCEEEE--EcCCC------cEEEEe-CCCCc--eEEEeecCCCCeeE-EEEEecCceeeeccCC---CCcccccc
Q 012996          276 AYST-GDLLIS--GSEDG------MVRVWD-PITHN--IVRMFRLAKGPVNN-ILVVRRPLYLNLGSFS---NPHTSSRR  339 (451)
Q Consensus       276 ~~~~-~~~l~s--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-l~~s~~~~~l~~~s~d---~~i~iw~~  339 (451)
                      +|+| |+.|+.  +..++      .|.+|| ...+.  +...+..+...+.. ++|+|||+.|+..+.+   +.+.+|++
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence            9999 886664  45666      577788 34444  15555544445554 6999999999766554   78999987


Q ss_pred             C
Q 012996          340 H  340 (451)
Q Consensus       340 ~  340 (451)
                      .
T Consensus       392 ~  392 (723)
T 1xfd_A          392 N  392 (723)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=1.4e-24  Score=224.67  Aligned_cols=293  Identities=12%  Similarity=0.039  Sum_probs=224.6

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceeeeecCCCCeeEEEEC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEVKSLPAEPIKPIAAN   89 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~~~~~~~~v~~~~~~   89 (451)
                      +....+|....+.....+.   +|...+.++.  |+++ .+++++..+ +.+.+|.++  .........+ ..+...+|+
T Consensus       182 ~~~~~lw~~~~~~~~~~l~---~~~~~v~~~~--~s~d-~l~~~~~~d-g~~~l~~~~~~g~~~~~l~~~-~~~~~~~~S  253 (1045)
T 1k32_A          182 GTRGKIWIEVNSGAFKKIV---DMSTHVSSPV--IVGH-RIYFITDID-GFGQIYSTDLDGKDLRKHTSF-TDYYPRHLN  253 (1045)
T ss_dssp             TTCCEEEEEEETTEEEEEE---CCSSCCEEEE--EETT-EEEEEECTT-SSCEEEEEETTSCSCEECCCC-CSSCEEEEE
T ss_pred             CCcCCEEEECCCCCeEECc---CCCCcccceE--EeCC-EEEEEEecc-CceEEEEEeCCCCcceEecCC-CCcceeeEc
Confidence            3456777655444455554   4556677777  9887 555555555 899999865  3333222223 357788999


Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCcceeeecc-----------ccCCeeEEEEc-cCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-----------HYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      |+|++|+.+ .++.|++|++... .+..+..           |...+.+++|+ |||+.|++++ ++.|.+|++..+   
T Consensus       254 pDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~---  327 (1045)
T 1k32_A          254 TDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT---  327 (1045)
T ss_dssp             ESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS---
T ss_pred             CCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC---
Confidence            999999887 5889999998443 3335444           44578999999 9999999887 789999998541   


Q ss_pred             hhhhcccccceecccCCcC-ceeEEEEeecCCeeEEEEeeCCCcEE-EEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996          158 CESQRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCK-VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (451)
                              . ...+..|.. .+..++|+ ++  ..+++++.++.+. +||+.+++......+...+..++|+|+|++|++
T Consensus       328 --------~-~~~~~~~~~~~~~~~~~s-dg--~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~  395 (1045)
T 1k32_A          328 --------Y-VLKVPEPLRIRYVRRGGD-TK--VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV  395 (1045)
T ss_dssp             --------B-EEECSCCSCEEEEEECSS-SE--EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEE
T ss_pred             --------c-eEEccCCCcceEEeeeEc-CC--CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEE
Confidence                    1 233556777 88999999 76  7888888888888 999987765544445678999999999999999


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC----------cEEEEeCCCCceEE
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG----------MVRVWDPITHNIVR  304 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg----------~i~iwd~~~~~~~~  304 (451)
                      ++.++.|++||+.++.         ......+|...+.+++|+| +++|++++.++          .|++||+.+++ +.
T Consensus       396 ~~~~~~v~~~d~~tg~---------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~  465 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGK---------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF  465 (1045)
T ss_dssp             EETTSEEEEEETTTCC---------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE
T ss_pred             ECCCCeEEEEECCCCc---------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE
Confidence            9999999999998763         3344557889999999999 99998887654          89999999887 67


Q ss_pred             EeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       305 ~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      .+..|...+..++|+|||++|++++.++....|+..
T Consensus       466 ~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          466 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             EeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence            778888889999999999999999998888888754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1e-22  Score=184.74  Aligned_cols=264  Identities=10%  Similarity=0.109  Sum_probs=184.8

Q ss_pred             ccEEEEECC--CCceee--eecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCc--ceeeeccccCCeeEEEEc
Q 012996           61 GSILYWSWS--KPQVEV--KSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGR--LLKKWHAHYRAVTCLVFS  131 (451)
Q Consensus        61 g~i~vw~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~  131 (451)
                      +.|.+|.++  ++....  ...+...+..++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..+...+..++|+
T Consensus        16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s   94 (347)
T 3hfq_A           16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD   94 (347)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence            667777765  444332  223456788999999999 554443   6899999997665  344545677888999999


Q ss_pred             cCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceeccc---------CCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          132 EDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFT---------GHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       132 ~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      |++++|++++ .++.|.+|++...        .....+..+.         .+...+.+++|+|++  +++++...++.|
T Consensus        95 pdg~~l~~~~~~~~~v~v~~~~~~--------g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l~v~~~~~~~v  164 (347)
T 3hfq_A           95 EARQLVYSANYHKGTAEVMKIAAD--------GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RLAVIDLGSDKV  164 (347)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTT--------SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEeCCC--------CCeeecceeecCCCCCCccccCCCceEEEECCCC--cEEEEeCCCCEE
Confidence            9999888887 6789999998531        0111111111         123357889999998  666777778899


Q ss_pred             EEEEcC-CCceeee--ee--cccceeEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC------
Q 012996          202 KVWSLL-KGRLLRN--IV--FPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------  269 (451)
Q Consensus       202 ~iwd~~-~~~~~~~--~~--~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------  269 (451)
                      .+|++. +++....  +.  ....+..++|+|+|+++++ +..++.|.+|++......     ...+..+....      
T Consensus       165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-----FTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESSCTTCCSC
T ss_pred             EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-----eEEeeeeeecCCCCCCC
Confidence            999998 4543322  22  2346788999999997666 456789999998852110     11222222222      


Q ss_pred             cceeEEEEec-CCEE-EEEcCCCcEEEEeCC---CCceEEEeecCCCCeeEEEEEecCceeeeccCC-CCccccccC
Q 012996          270 KAVTCLAYST-GDLL-ISGSEDGMVRVWDPI---THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-NPHTSSRRH  340 (451)
Q Consensus       270 ~~v~~~~~~~-~~~l-~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d-~~i~iw~~~  340 (451)
                      ..+..++|+| +++| ++...++.|.+|++.   ..+.+..+..+...+..++|+|||++|++++.+ +.+.+|++.
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            4588999999 8877 555668999999987   335566666666778999999999988887654 889999554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2e-22  Score=183.20  Aligned_cols=249  Identities=12%  Similarity=0.109  Sum_probs=190.7

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC-CC---------
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AE---------   81 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-~~---------   81 (451)
                      ++.|.+||..+++.+..+.... .+   ..++  |+|+|+++++++..++.|.+||..+++....... ..         
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~-~~---~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  141 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDL-KP---FGAT--INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL  141 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CC---CSEE--EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred             CccEEEEcCCCCeEEEEEecCC-Cc---ceEE--ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence            6789999999999988886533 23   3344  9999997776666559999999998876544322 11         


Q ss_pred             CeeEEEECCCCcEEEEec--cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      .+.+++|+|+++++++++  .++.|.+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.++     
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~-----  216 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN-----  216 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT-----
T ss_pred             CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC-----
Confidence            278899999999887765  4788999999999988888766667899999999999999999999999999652     


Q ss_pred             hhcccccceeccc----CCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996          160 SQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       160 ~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (451)
                            .....+.    ++...+.+++|++++  +.+++++ .++.|.+||+.+++.+..+..... ..++|+|++++++
T Consensus       217 ------~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~  287 (353)
T 3vgz_A          217 ------KILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAY  287 (353)
T ss_dssp             ------EEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEE
T ss_pred             ------eEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEE
Confidence                  2222222    355678889999988  5555544 559999999999998888875443 6799999999776


Q ss_pred             EEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996          235 AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       235 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      +++ .++.|.+||..+.         +.+..+.. ...+.+++|+| +++|+++..++
T Consensus       288 v~~~~~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          288 VTHRQAGKVSVIDAKSY---------KVVKTFDT-PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEETTTTEEEEEETTTT---------EEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEECCCCeEEEEECCCC---------eEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence            665 6899999999875         33444443 34779999999 88777766654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=9.8e-23  Score=184.88  Aligned_cols=282  Identities=12%  Similarity=0.142  Sum_probs=186.0

Q ss_pred             CeEEEeecCC---CCCCeEEEECc--cCceee-eeecCCCCCCceEEecceEeeccCcccCCCC--CCccEEEEECCCCc
Q 012996            1 MELLIASSSV---ADTGIGCWDLE--SGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSA--SSGSILYWSWSKPQ   72 (451)
Q Consensus         1 ~e~~l~s~~~---~dg~i~vwd~~--~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--d~g~i~vw~~~~~~   72 (451)
                      |.-.+++|++   .++.|.+|++.  +++... ....+.   .....++  |+|+|+ +++++.  +++.|.+|++.++.
T Consensus         1 ~~~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~   74 (347)
T 3hfq_A            1 MQERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQT   74 (347)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTE
T ss_pred             CCcEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCc
Confidence            4444455421   45678887765  455432 122222   3334455  999999 555543  24899999997665


Q ss_pred             eeee---ecCCCCeeEEEECCCCcEEEEec-cCCCEEEEEcCC-Cc--ceeeecc---------ccCCeeEEEEccCCcE
Q 012996           73 VEVK---SLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GR--LLKKWHA---------HYRAVTCLVFSEDGSF  136 (451)
Q Consensus        73 ~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~  136 (451)
                      ....   ..+...+..++|+|+|++|++++ .++.|.+|++.. +.  .+..+..         +...+.+++|+|++++
T Consensus        75 ~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l  154 (347)
T 3hfq_A           75 AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL  154 (347)
T ss_dssp             EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred             EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence            4322   23567889999999999888877 678999999953 32  2222221         1234888999999996


Q ss_pred             EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCC--Cce-
Q 012996          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK--GRL-  211 (451)
Q Consensus       137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~-  211 (451)
                      +++...++.|.+|++...        ........+.. ....+..++|+|++  +++ +++..++.|.+|++..  ++. 
T Consensus       155 ~v~~~~~~~v~~~~~~~~--------g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDA--------GQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEEETTTTEEEEEEECTT--------SCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEEeCCCCEEEEEEECCC--------CcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceE
Confidence            666667889999999621        11111111122 22356789999998  644 4566788999999874  443 


Q ss_pred             -eeeee-cc------cceeEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996          212 -LRNIV-FP------SVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (451)
Q Consensus       212 -~~~~~-~~------~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  281 (451)
                       +..+. .+      ..+..++|+|+|++|++ ...++.|.+|++....      ....+..+..+...+..++|+| ++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg~  298 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTEA  298 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTSS
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCCC
Confidence             22222 12      45888999999998855 4568999999997321      1244556666677789999999 88


Q ss_pred             EEEEEcC-CCcEEEE--eCCCCceEE
Q 012996          282 LLISGSE-DGMVRVW--DPITHNIVR  304 (451)
Q Consensus       282 ~l~s~~~-dg~i~iw--d~~~~~~~~  304 (451)
                      +|++++. ++.|.+|  |..++++..
T Consensus       299 ~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            8887765 4899999  656676553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=3e-23  Score=188.37  Aligned_cols=272  Identities=10%  Similarity=0.022  Sum_probs=188.5

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCC--CeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccc-
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAH-  121 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-  121 (451)
                      +++++.++++++.+ +.|.+||..+++.........  .+..++|+|++++++ ++..++.|.+||+.+++.+..+..+ 
T Consensus         7 ~~~~~~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~   85 (349)
T 1jmx_B            7 LKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   85 (349)
T ss_dssp             CCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             ccCCCEEEEEeCCC-CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence            67778888888777 999999999887665443334  688999999998654 5567889999999999887766533 


Q ss_pred             -----cCCeeEEEEccCCcEEEEeeCC------------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          122 -----YRAVTCLVFSEDGSFLISGSED------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       122 -----~~~v~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                           ...+.+++|+|+|++|++++.+            +.|.+||+.++..        ...+..+. +...+.+++|+
T Consensus        86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~s  156 (349)
T 1jmx_B           86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRTFP-MPRQVYLMRAA  156 (349)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEEEE-CCSSCCCEEEC
T ss_pred             ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--------cceeeecc-CCCcccceeEC
Confidence                 2337899999999999998865            8999999965311        11122222 33467889999


Q ss_pred             ecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc-------------------------ceeEEEECCCCCEEEEEeCC
Q 012996          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------------------VIDAIALDPAEHVFYAGSRD  239 (451)
Q Consensus       185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~l~~~~~d  239 (451)
                      +++  + +++++  +.|.+||+.+++....+....                         ....+++++++.........
T Consensus       157 ~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          157 DDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             TTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            998  6 55543  349999999998877665332                         34456666544211110000


Q ss_pred             C-cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012996          240 G-SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (451)
Q Consensus       240 g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (451)
                      . .+..++..+..        .....+..+...+.+++|+|  +++++++  ++.|.+||+.+++.+..+... ..+.++
T Consensus       232 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~  300 (349)
T 1jmx_B          232 LYGYLSVDLKTGK--------THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCV  300 (349)
T ss_dssp             EEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEE
T ss_pred             ceeEEEEeccCCc--------EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccce
Confidence            1 11123443332        11112223556788999998  6677777  889999999999988888753 457899


Q ss_pred             EEEecCceeeeccCCCCccccccCCCC
Q 012996          317 LVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       317 ~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +|+|++++|++++.++.+.+|+..+.+
T Consensus       301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          301 AFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             EECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             EECCCCCEEEEecCCCeEEEEeccccc
Confidence            999999999988889999999987654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.5e-23  Score=207.53  Aligned_cols=319  Identities=11%  Similarity=0.029  Sum_probs=211.0

Q ss_pred             eecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--------CccEEEEECCCCceeeee
Q 012996            6 ASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         6 ~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~g~i~vw~~~~~~~~~~~   77 (451)
                      +..+ .|+.|++||+.+++....+..+......+..++  |||||++|++++..        ++.|++||+.+++.....
T Consensus        30 ~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~  106 (719)
T 1z68_A           30 LHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYG--LSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN  106 (719)
T ss_dssp             EEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred             EEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEE--ECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce
Confidence            3344 589999999999988766543321112366777  99999999988761        289999999988762111


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-ccccCCe-----------------eEEEEccCCcEEEE
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAV-----------------TCLVFSEDGSFLIS  139 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~s  139 (451)
                      .....+..++|||||+.||.+. ++.|++|++.+++..... .++...|                 .+++|+|||++|++
T Consensus       107 ~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~  185 (719)
T 1z68_A          107 ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY  185 (719)
T ss_dssp             CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred             ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence            1235789999999999999875 789999999888765432 2332222                 48999999999999


Q ss_pred             eeCCC----------------------------------cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          140 GSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       140 ~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      ++.|.                                  .|.+||+.++.....   ........+.+|...+.+++|+|
T Consensus       186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sp  262 (719)
T 1z68_A          186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP---QEVPVPAMIASSDYYFSWLTWVT  262 (719)
T ss_dssp             EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC---EECCCCHHHHTSCEEEEEEEESS
T ss_pred             EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce---eEccCCccCCCCcceEEEeEEeC
Confidence            87652                                  788999866321100   00000023456888999999999


Q ss_pred             cCCeeEEEEeeCC----CcEEEEE----cCCCceeeee-----eccccee-----EEEECCCCCEEEE--EeCCC--cEE
Q 012996          186 GGVSATIVSASED----RTCKVWS----LLKGRLLRNI-----VFPSVID-----AIALDPAEHVFYA--GSRDG--SIY  243 (451)
Q Consensus       186 ~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~-----~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~  243 (451)
                      ++  .++++....    ..|.+||    +.+++....+     .+...+.     .+.|+|+|+.++.  +..+|  .|+
T Consensus       263 D~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          263 DE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             SS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred             CC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence            96  677764433    2488899    7777665544     2444555     7899999996654  44555  466


Q ss_pred             EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcC-----CCcEEEEeCCC--Cc-eEEEeec----CCC
Q 012996          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE-----DGMVRVWDPIT--HN-IVRMFRL----AKG  311 (451)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~-----dg~i~iwd~~~--~~-~~~~~~~----~~~  311 (451)
                      +||+.+..          ...+..+...+..+.++.++.|+..+.     ++...+|.+..  +. ....+..    |..
T Consensus       341 ~~~~~~~~----------~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~  410 (719)
T 1z68_A          341 YIKDTVEN----------AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC  410 (719)
T ss_dssp             EESSCSTT----------CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB
T ss_pred             EEECCCCc----------eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC
Confidence            66765542          234445555666655557444444444     48888998754  32 1233332    556


Q ss_pred             CeeEEEEEecCceeee-ccCC--CCccccccCCCC
Q 012996          312 PVNNILVVRRPLYLNL-GSFS--NPHTSSRRHGSQ  343 (451)
Q Consensus       312 ~v~~l~~s~~~~~l~~-~s~d--~~i~iw~~~~~~  343 (451)
                      .+..+.|+|++++++. ++.+  ..+.+|+..++.
T Consensus       411 ~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          411 QYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             CBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             ceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            7889999999998874 3333  346778775443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.2e-22  Score=202.34  Aligned_cols=275  Identities=14%  Similarity=0.121  Sum_probs=188.3

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-----Cceeeeec-CCCC---
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSL-PAEP---   82 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-----~~~~~~~~-~~~~---   82 (451)
                      ++.|.+||+.+++..... .+.   ..+..++  |+|+|+.++++ .+ +.|.+|++.+     ++...... +...   
T Consensus       100 ~~~i~~~d~~~~~~~~l~-~~~---~~~~~~~--~SpdG~~la~~-~~-~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A          100 QGGLVGFDMLARKVTYLF-DTN---EETASLD--FSPVGDRVAYV-RN-HNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             TTEEEEEETTTTEEEEEE-CCT---TCCTTCE--ECTTSSEEEEE-ET-TEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             CCEEEEEECCCCceEEcc-CCc---ccccCCc--CCCCCCEEEEE-EC-CeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            589999999988765433 333   2344445  99999999985 44 8999999987     65543222 2222   


Q ss_pred             -----------eeEEEECCCCcEEEEec---------------------------------cCCCEEEEEcCCCcceeee
Q 012996           83 -----------IKPIAANSHGTYIAGGG---------------------------------QSGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        83 -----------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~  118 (451)
                                 +.++.|+|||++|++++                                 .+..|++||+.+++.....
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                       58999999999999987                                 3467999999988765443


Q ss_pred             --ccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCc---CceeEEEEee--c
Q 012996          119 --HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHT---LRITDIVIGY--G  186 (451)
Q Consensus       119 --~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~i~~~~--~  186 (451)
                        ..|...+.+++|+|||+.|++++.++     .|.+||+.++.        ....+.. ..+.   ..+.+++|+|  +
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--------~~~~~~~-~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--------FVRTLFV-ETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--------EEEEEEE-EECSSCCCCCSCCEECTTCS
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--------eeeEEEE-ccCCCeECccCCceeecCCC
Confidence              25677899999999999999888775     89999996521        0011110 1111   2346788999  7


Q ss_pred             CCeeEEEEeeCCCcEEEEEcC-CCceeeeee-cccceeE-EEECCCCCEEEEEeCC-C----cEEEEEccCCCCCCCCCC
Q 012996          187 GVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRD-G----SIYIAALNAESPSTSSYG  258 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~  258 (451)
                      +  .++++++.++.+++|++. ++..+..+. +...+.. ++|+|+++.|+.++.+ +    .|+.||+.++.       
T Consensus       323 g--~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------  393 (706)
T 2z3z_A          323 N--QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------  393 (706)
T ss_dssp             S--EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------
T ss_pred             C--EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------
Confidence            7  789999999999999876 566555554 4555666 7999999888766544 3    56666665542       


Q ss_pred             ceeeeeeccCCcceeEEEEec-CCEEEEEcCC----CcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996          259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNIVRMFRLAKGPVNNILV  318 (451)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (451)
                         ...+ .|...+.+++|+| +++++..+.+    +.|.+||+.+++ ...+. +..++....+
T Consensus       394 ---~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~  452 (706)
T 2z3z_A          394 ---TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAM  452 (706)
T ss_dssp             ---CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CC
T ss_pred             ---ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCC
Confidence               1222 2567789999999 8888776443    569999998887 33333 3334444434

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=4e-23  Score=200.78  Aligned_cols=268  Identities=12%  Similarity=0.043  Sum_probs=196.6

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC-CCeeEEEECCCCcEEEEecc---CCCEEEEEcCC-
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS-  111 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-  111 (451)
                      ..+.+++  |+|||+.||.++..+|++.||+++++.......+. ..+..++|+|| +++++++.   +....+|.+.. 
T Consensus        22 ~~~~~~~--~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           22 VEKYSLQ--GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             SCEEEEE--EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             cchheee--cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            3577888  99999999998873499999999777665555454 58999999999 77777654   45566665543 


Q ss_pred             --CcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996          112 --GRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (451)
Q Consensus       112 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (451)
                        +... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.++           ... .+..+..  .+++|+|+| 
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-----------~~~-~l~~~~~--~~~~~spDG-  161 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGG-----------GLR-ELARLPG--FGFVSDIRG-  161 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-----------EEE-EEEEESS--CEEEEEEET-
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCC-----------cEE-EeecCCC--ceEEECCCC-
Confidence              2222 33322 23446688887753 333344455669998552           111 1222222  788999999 


Q ss_pred             eeEEEEeeCC----CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCC--cEEEEEccCCCCCCCCCCceee
Q 012996          189 SATIVSASED----RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHII  262 (451)
Q Consensus       189 ~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~  262 (451)
                       +++++++.+    +.|++||+.+++......+...+..++|+|+|+.|+++..++  .|++||+.++.         ..
T Consensus       162 -~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---------~~  231 (582)
T 3o4h_A          162 -DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---------VE  231 (582)
T ss_dssp             -TEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---------EE
T ss_pred             -CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---------EE
Confidence             788887777    789999999888765555778899999999999999888888  89999998764         22


Q ss_pred             eeeccCCcceeEEE--------Eec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996          263 GSLSDHSKAVTCLA--------YST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (451)
Q Consensus       263 ~~~~~~~~~v~~~~--------~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~  333 (451)
                       .+.+|...+..++        |+| +.++++++.||.+++|++  ++.+.   .+.+.|.+++|+ +++++++++.+..
T Consensus       232 -~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          232 -DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             -ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             -EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence             5566777777777        999 988899999999999999  66554   345679999999 9999988887754


Q ss_pred             ---ccccccCC
Q 012996          334 ---HTSSRRHG  341 (451)
Q Consensus       334 ---i~iw~~~~  341 (451)
                         +.+|+..+
T Consensus       305 p~~l~~~d~~~  315 (582)
T 3o4h_A          305 PPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEETTCC
T ss_pred             CCeEEEEcCCC
Confidence               66666553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.5e-22  Score=188.38  Aligned_cols=262  Identities=13%  Similarity=0.095  Sum_probs=177.1

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc----------ceee-----eccccCCe
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR----------LLKK-----WHAHYRAV  125 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~v  125 (451)
                      +.+++|+....      .+...+..+++++++.++++++.++ +++|+.....          .+..     ...+...|
T Consensus        23 ~~vri~~~~~~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   95 (434)
T 2oit_A           23 KKVRIFDSPEE------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPI   95 (434)
T ss_dssp             CEEECSCCCSS------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCE
T ss_pred             eeEEecCCccc------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcc
Confidence            46777764211      2345689999999999999999887 9998763211          0110     11356679


Q ss_pred             eEEEEccCCcEEE----EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          126 TCLVFSEDGSFLI----SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       126 ~~~~~~~~~~~l~----s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      .+++|+|++++|+    +|+.|+.|++||+.+.................+.+|...|.+++|+|+.. .+|++++.||+|
T Consensus        96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~Dg~v  174 (434)
T 2oit_A           96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLADGSI  174 (434)
T ss_dssp             EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEETTSCE
T ss_pred             cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEECCCeE
Confidence            9999999999999    88899999999996531100000001112456678999999999999732 799999999999


Q ss_pred             EEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-------cCCccee
Q 012996          202 KVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------DHSKAVT  273 (451)
Q Consensus       202 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~v~  273 (451)
                      ++||++++....... |...+.+++|+|++++|++|+.||.|++||.+. .         ....+.       .|...|.
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~---------~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-Q---------EKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-C---------EEEEECCCTTCCTTSCEEEE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-c---------ccccccCCcccCCCCceeEE
Confidence            999999886654433 678999999999999999999999999999982 2         111221       2445899


Q ss_pred             EEEEec-CCEEEEE-cCCC------cEEEEeCCCCc-----eEEEee-------cCCCCeeEEEEEecCceeeecc-CCC
Q 012996          274 CLAYST-GDLLISG-SEDG------MVRVWDPITHN-----IVRMFR-------LAKGPVNNILVVRRPLYLNLGS-FSN  332 (451)
Q Consensus       274 ~~~~~~-~~~l~s~-~~dg------~i~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~s~~~~~l~~~s-~d~  332 (451)
                      +++|++ +.++++. +.||      .+++|++....     ....+.       ....+-..+.+-++.+++++++ ..+
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~  324 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST  324 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence            999999 5555443 3343      38999987642     111211       1122223334447777765544 344


Q ss_pred             CccccccC
Q 012996          333 PHTSSRRH  340 (451)
Q Consensus       333 ~i~iw~~~  340 (451)
                      .+-+....
T Consensus       325 dv~vl~~~  332 (434)
T 2oit_A          325 EVSILARQ  332 (434)
T ss_dssp             BCEEEEEC
T ss_pred             ceeEEEec
Confidence            45555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=2e-21  Score=176.21  Aligned_cols=267  Identities=12%  Similarity=0.073  Sum_probs=184.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP---   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~---   79 (451)
                      .++++++ .++.|.+||+.+++.+..+.....  .....++  |+|+|+.+++++..++.|.+||..+++.......   
T Consensus        12 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B           12 EYMIVTN-YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECSSC--CSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             EEEEEeC-CCCeEEEEECCCCcEEEEEecCCC--CCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            4677888 899999999999998888764321  1244556  9999987766555449999999998876544322   


Q ss_pred             ----CCCeeEEEECCCCcEEEEeccC------------CCEEEEEcCCCcce---eeeccccCCeeEEEEccCCcEEEEe
Q 012996           80 ----AEPIKPIAANSHGTYIAGGGQS------------GDIYMWEVASGRLL---KKWHAHYRAVTCLVFSEDGSFLISG  140 (451)
Q Consensus        80 ----~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~  140 (451)
                          ...+.+++|+|+|++|++++.+            +.|.+||+.+++..   ..+. +...+.+++|+|+++ ++++
T Consensus        87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~  164 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVA  164 (349)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEE
T ss_pred             cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEc
Confidence                2238899999999999998865            89999999886543   3333 334688999999999 5555


Q ss_pred             eCCCcEEEeeCcchhhhhhhhcccccceecccCCc---------------------C---ceeEEEEeecCCe-------
Q 012996          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------------------L---RITDIVIGYGGVS-------  189 (451)
Q Consensus       141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~i~~i~~~~~~~~-------  189 (451)
                      +.  .|.+||+.++..           ...+..+.                     .   ...++++++++..       
T Consensus       165 ~~--~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          165 GP--DIYKMDVKTGKY-----------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             SS--SEEEECTTTCCE-----------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             cC--cEEEEeCCCCce-----------eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            43  499999965321           11111110                     0   2234455433210       


Q ss_pred             --eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          190 --ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       190 --~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                        .++.....++.+.+|++.        .....+..++++| ++++++++  ++.|++||+.+.         +.+..+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~  292 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFA--------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---------KLIKAAN  292 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEE--------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---------EEEEEEE
T ss_pred             ceeEEEEeccCCcEEecccc--------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---------eEEEEEc
Confidence              111122333444444431        1455788999999 99999988  889999999875         3333443


Q ss_pred             cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  309 (451)
                       ....+.+++|+| +++|++++.++.|.+||+.+++.+..+..+
T Consensus       293 -~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          293 -LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             -CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence             234578999999 888888888999999999999999888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.4e-20  Score=171.64  Aligned_cols=291  Identities=11%  Similarity=0.143  Sum_probs=189.2

Q ss_pred             CCCCeEEEEC--ccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC---CccEEEEECCC--Cceeee---ecCC
Q 012996           11 ADTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSK--PQVEVK---SLPA   80 (451)
Q Consensus        11 ~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~g~i~vw~~~~--~~~~~~---~~~~   80 (451)
                      .++.|.+|++  .+++.......   +......++  |+|+|++|++++.+   ++.|.+|+++.  +.....   ..+.
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~--~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~   99 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDA---EVANPSYLI--PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG   99 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEE--ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEEEeCCCCCEEEeecc---cCCCCceEE--ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence            5678999976  45654332222   223344455  99999999888773   37999999865  333222   2244


Q ss_pred             CCeeEEEECCCCcEEEEec-cCCCEEEEEcCCCcceeee------c--------cccCCeeEEEEccCCcEEEEee-CCC
Q 012996           81 EPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKW------H--------AHYRAVTCLVFSEDGSFLISGS-EDG  144 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~------~--------~~~~~v~~~~~~~~~~~l~s~~-~dg  144 (451)
                      ..+..+++  ++++|++++ .++.|.+|++.....+..+      .        .+...+.+++|+|+|+++++++ .++
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence            56777888  788776665 5789999999754333221      1        1123457899999999776555 478


Q ss_pred             cEEEeeCcchhhhhhhhccc-ccc----eecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCCCcee--eeee
Q 012996          145 CVRIWSLLTVFEECESQRAS-HLY----LHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLL--RNIV  216 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~--~~~~  216 (451)
                      .|.+|++........   .. ...    ......+...+..++|+|++  +++++++ .++.|.+||+.+++..  ..+.
T Consensus       178 ~v~v~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~  252 (361)
T 3scy_A          178 QIHKFNINPNANADN---KEKFLTKGTPEAFKVAPGSGPRHLIFNSDG--KFAYLINEIGGTVIAFRYADGMLDEIQTVA  252 (361)
T ss_dssp             EEEEEEECTTCCTTT---CCCCEEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEcCCCCccc---ccceeecccccceecCCCCCCeEEEEcCCC--CEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence            999999854210000   00 000    11122334556889999998  6676666 6899999999877542  2222


Q ss_pred             ----cccceeEEEECCCCCEEEEEeCC--CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-C
Q 012996          217 ----FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-E  288 (451)
Q Consensus       217 ----~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~  288 (451)
                          +......++|+|++++|+++..+  +.|.+|++.....     ....+..+.. ...+.+++|+| +++|++++ .
T Consensus       253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-----~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG-----TLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC-----CEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred             cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-----cEEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence                12346799999999999877765  8999999963211     0133444444 56788999999 88888877 6


Q ss_pred             CCcEEEE--eCCCCceEEEe-ecCCCCeeEEEEE
Q 012996          289 DGMVRVW--DPITHNIVRMF-RLAKGPVNNILVV  319 (451)
Q Consensus       289 dg~i~iw--d~~~~~~~~~~-~~~~~~v~~l~~s  319 (451)
                      ++.|.+|  |..+++..... ..+...+.|+.|.
T Consensus       327 ~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          327 TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            7889995  55577765543 2345578888886

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=8.7e-23  Score=198.44  Aligned_cols=234  Identities=10%  Similarity=0.031  Sum_probs=178.9

Q ss_pred             CCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeecccc-CCeeEEEEccCCcEEEEeeC---CCcEEEeeCcch
Q 012996           80 AEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTV  154 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~  154 (451)
                      ..+|.+++|+|||+.||.++. ||.+.||++..++... +..|. ..+..+.|+|| +.+++++.   +....+|.+...
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999998877 9999999996665544 44444 68999999999 77777765   455677665320


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (451)
                      .        ..... .+..+. .+...+|++++.+..+++++.+ .+.+||+.+++......++.  .+++|+|+|++++
T Consensus        99 ~--------~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la  165 (582)
T 3o4h_A           99 R--------PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG--FGFVSDIRGDLIA  165 (582)
T ss_dssp             S--------TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS--CEEEEEEETTEEE
T ss_pred             C--------CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC--ceEEECCCCCEEE
Confidence            0        01111 122121 2335688898864455555544 45599999887665555444  8899999999999


Q ss_pred             EEeCC----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC--cEEEEeCCCCceEEEee
Q 012996          235 AGSRD----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG--MVRVWDPITHNIVRMFR  307 (451)
Q Consensus       235 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg--~i~iwd~~~~~~~~~~~  307 (451)
                      .++.+    +.|++||+.++.          ...+..|...+..++|+| |+.|+++..+|  .|++||+.+++.. .+.
T Consensus       166 ~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~  234 (582)
T 3o4h_A          166 GLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE  234 (582)
T ss_dssp             EEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred             EEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence            88777    789999988764          335677888999999999 99999888888  8999999999888 778


Q ss_pred             cCCCCeeEEE--------EEecCceeeeccCCCCcccccc
Q 012996          308 LAKGPVNNIL--------VVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       308 ~~~~~v~~l~--------~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      .|...+..++        |+|||..+++++.|+.+++|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            8888788778        9999988899999999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=9.2e-22  Score=181.36  Aligned_cols=302  Identities=9%  Similarity=-0.082  Sum_probs=203.5

Q ss_pred             eEEEECccCceeeeeecCCCCCCce--EEecceEeeccCcccCCCCCCc--cEEEEECCCCceeeeec-CCCCeeEEEEC
Q 012996           15 IGCWDLESGAEQLRYKSCASPPHGL--ACVGQRFLASSQLREQPSASSG--SILYWSWSKPQVEVKSL-PAEPIKPIAAN   89 (451)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~d~g--~i~vw~~~~~~~~~~~~-~~~~v~~~~~~   89 (451)
                      ...+|..+|..+..+..+.......  ...+  |+|+|++|+.++..+|  .|.+||..+++...... +...+..+.|+
T Consensus        12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~--~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s   89 (388)
T 3pe7_A           12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKC--FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS   89 (388)
T ss_dssp             EEEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred             eEEecCCCCcceEEecCCcccccchhhcCcc--CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence            3456777888887776544322111  1145  9999999998887436  48888988877654443 33445578899


Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEE--EccCCcEEEEe----------------------eCCCc
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FSEDGSFLISG----------------------SEDGC  145 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~----------------------~~dg~  145 (451)
                      |||+.|+.++.++.|++||+.+++....+..+...+....  ++|++++++..                      ..++.
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            9999999999889999999999987766666666554444  48899988742                      24467


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCC------CcEEEEEcCCCceeeeeecc
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVFP  218 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~  218 (451)
                      |.+||+.++            ....+..+...+..+.|+| ++  ..|+.++.+      ..|.++|+..+.......+.
T Consensus       170 l~~~d~~~g------------~~~~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  235 (388)
T 3pe7_A          170 LMRVDLKTG------------ESTVILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA  235 (388)
T ss_dssp             EEEEETTTC------------CEEEEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred             EEEEECCCC------------ceEEeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence            999998552            1233344566788999999 87  677666543      37888888665543333333


Q ss_pred             --cceeEEEECCCCCEEEEEeC-CC----cEEEEEccCCCCCCCCCCceeeeeeccCCcc---eeEEEEec-CCEEEEE-
Q 012996          219 --SVIDAIALDPAEHVFYAGSR-DG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKA---VTCLAYST-GDLLISG-  286 (451)
Q Consensus       219 --~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~-~~~l~s~-  286 (451)
                        ..+...+|+|+|+.|+..+. ++    .|++||+.++..       ..+..+.++...   ...+.|+| |+.|+.. 
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence              35778899999997755433 22    399999988642       223333321111   12237899 7777653 


Q ss_pred             --------cCCCcEEEEeCCCCceEEEeecCCC-----------CeeEEEEEecCceeeecc-CCCCccccccC
Q 012996          287 --------SEDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGS-FSNPHTSSRRH  340 (451)
Q Consensus       287 --------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~  340 (451)
                              ..+..|.+||+.+++. ..+..+..           .+.+++|+|||+.|+.++ .+|...+|.+.
T Consensus       309 ~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          309 QDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             --------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                    4566899999988765 45555555           578899999999887665 46777777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=1.9e-20  Score=170.72  Aligned_cols=271  Identities=8%  Similarity=0.050  Sum_probs=180.3

Q ss_pred             ccEEEEECC--CCceeee-ecCCCCeeEEEECCCCcEEEEeccC----CCEEEEEcCC--Ccc--eeeeccccCCeeEEE
Q 012996           61 GSILYWSWS--KPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVAS--GRL--LKKWHAHYRAVTCLV  129 (451)
Q Consensus        61 g~i~vw~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~  129 (451)
                      +.|.+|.++  ++..... ..+...+..++|+|+|++|++++.+    +.|.+|++..  ++.  +.....+......++
T Consensus        27 ~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~  106 (361)
T 3scy_A           27 KGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT  106 (361)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE
T ss_pred             CCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE
Confidence            789999764  4443322 1266788899999999999988875    7899998865  432  333444556677788


Q ss_pred             EccCCcEEEEee-CCCcEEEeeCcchhhhhhhhc---ccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEE
Q 012996          130 FSEDGSFLISGS-EDGCVRIWSLLTVFEECESQR---ASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVW  204 (451)
Q Consensus       130 ~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iw  204 (451)
                      +  ++++|++++ .++.|.+|++...........   ....-......+...+.+++|+|++  +++++ ...++.|.+|
T Consensus       107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~  182 (361)
T 3scy_A          107 T--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTDQIHKF  182 (361)
T ss_dssp             E--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTTEEEEE
T ss_pred             E--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCCEEEEE
Confidence            8  788777766 578999999964211000000   0000000011123346789999998  65554 4458899999


Q ss_pred             EcCCCce--------------eeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          205 SLLKGRL--------------LRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       205 d~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      ++.....              .........+..++|+|+++++++++ .++.|.+|++.++...    ....+.....+.
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~----~~~~~~~~~~~~  258 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD----EIQTVAADTVNA  258 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE----EEEEEESCSSCC
T ss_pred             EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE----EeEEEecCCCCC
Confidence            9875431              11222456678999999999888877 6899999999854210    001122223344


Q ss_pred             cceeEEEEec-CCEEEEEcC--CCcEEEEeCC--CCc--eEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccC
Q 012996          270 KAVTCLAYST-GDLLISGSE--DGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH  340 (451)
Q Consensus       270 ~~v~~~~~~~-~~~l~s~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~  340 (451)
                      ..+..++|+| +++|+++..  ++.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++ .++.+.+|++.
T Consensus       259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            5678999999 888866655  4899999985  444  4445554 55788999999999888877 67889997654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=2.7e-22  Score=200.01  Aligned_cols=276  Identities=11%  Similarity=0.029  Sum_probs=189.5

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCC----CeeEEEECCCCcEEEEecc---------CCCEEEEEcCCC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE----PIKPIAANSHGTYIAGGGQ---------SGDIYMWEVASG  112 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~  112 (451)
                      |+|+|++++++ .+ +.|++||..+++......+..    .+.+++|||||++|++++.         ++.|++||+.++
T Consensus        23 ~s~dg~~~~~~-~d-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           23 WISGQEYLHQS-AD-NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             ESSSSEEEEEC-TT-SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             ECCCCeEEEEc-CC-CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            99999766655 45 999999999888665543322    4899999999999998876         689999999988


Q ss_pred             cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce---------eEEEE
Q 012996          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI---------TDIVI  183 (451)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i---------~~i~~  183 (451)
                      +.+.... ....+..++|+|||+.|+.+. ++.|++|++.++.......  .......+.++...|         .+++|
T Consensus       101 ~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~--~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A          101 EFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF--NGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             EECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC--CCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             cccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec--CCCcCCeEcccccceeeeecccCcccEEE
Confidence            7631111 125688999999999999886 7799999996532110000  000000112222222         58999


Q ss_pred             eecCCeeEEEEeeCCC----------------------------------cEEEEEcCCCcee--eee-------ecccc
Q 012996          184 GYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRLL--RNI-------VFPSV  220 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~--~~~-------~~~~~  220 (451)
                      +|++  +.|++++.|.                                  .|++||+.+++..  ..+       .+...
T Consensus       177 SPDG--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          177 SPNG--KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             CTTS--SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             CCCC--CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9998  7888877552                                  7889999887653  111       14567


Q ss_pred             eeEEEECCCCCEEEEEeCC----CcEEEEE----ccCCCCCCCCCCceeeeee----ccCCccee-----EEEEec-CCE
Q 012996          221 IDAIALDPAEHVFYAGSRD----GSIYIAA----LNAESPSTSSYGMHIIGSL----SDHSKAVT-----CLAYST-GDL  282 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~-~~~  282 (451)
                      +..++|+|+++++++....    ..|++||    ..++.         ....+    .+|...+.     .+.|+| ++.
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD---------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc---------eEEEEecccccCCceEccccCCccEECCCCCe
Confidence            8999999998877775433    2488888    55542         12222    35666676     889999 775


Q ss_pred             EE--EEcCCC--cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCC-----CCccccccC
Q 012996          283 LI--SGSEDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-----NPHTSSRRH  340 (451)
Q Consensus       283 l~--s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d-----~~i~iw~~~  340 (451)
                      |+  ++..+|  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+     +...+|.+.
T Consensus       326 l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          326 YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            44  344555  57778887766 45666666678888888 88877666554     788999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.3e-21  Score=181.92  Aligned_cols=196  Identities=13%  Similarity=0.078  Sum_probs=151.7

Q ss_pred             ceEEecceEeeccCcccCCCCCCccEEEEECCCC-----------ce-----eeeecCCCCeeEEEECCCCcEEE----E
Q 012996           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKP-----------QV-----EVKSLPAEPIKPIAANSHGTYIA----G   97 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-----------~~-----~~~~~~~~~v~~~~~~~~~~~l~----~   97 (451)
                      .+..++  +++++.++++++.+ + +++|+....           ..     .....+...|.+++|+|+|++|+    +
T Consensus        38 ~~n~la--vs~~~~~l~~~~~d-g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           38 RSSLLA--VSNKYGLVFAGGAS-G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCBCEE--EETTTTEEEEEETT-E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CccEEE--EecCCCEEEEECCC-E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            456666  99999999998887 6 888874310           10     01223456799999999999999    7


Q ss_pred             eccCCCEEEEEcCCC--------cc---eeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           98 GGQSGDIYMWEVASG--------RL---LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        98 ~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |+.|+.|+|||+.++        +.   +..+.+|...|.+++|+|+ +.+|++++.||+|++||+++           .
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-----------~  182 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-----------T  182 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-----------S
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-----------C
Confidence            889999999999765        22   3456779999999999997 88999999999999999965           2


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c-------ccceeEEEECCCCCEEEEE-
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F-------PSVIDAIALDPAEHVFYAG-  236 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-------~~~i~~~~~~~~~~~l~~~-  236 (451)
                      .......+|...|.+++|++++  .+|++|+.||.|++||++ ++....+. +       ...+.+++|++++.++++. 
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             cceeeccCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            2334455688999999999998  899999999999999998 55554443 1       2378999999988877553 


Q ss_pred             eCCC------cEEEEEccCCC
Q 012996          237 SRDG------SIYIAALNAES  251 (451)
Q Consensus       237 ~~dg------~i~i~d~~~~~  251 (451)
                      ..+|      .+++|+++...
T Consensus       260 ~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          260 AADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             ETTCCSSSCCEEEEEECCCTT
T ss_pred             cCCCccCCCCceEEEEeccCC
Confidence            3443      38999998653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.88  E-value=3.2e-20  Score=168.48  Aligned_cols=285  Identities=12%  Similarity=0.076  Sum_probs=201.0

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec---
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL---   78 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~---   78 (451)
                      .|+.|.+||..+++.+.++.....   .  .++  |+|+|++++++..         .++.|.+||..+.+......   
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~---p--~i~--~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFN---G--HVQ--VSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEE---E--EEE--ECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             ccCeEEEEECCCCeEEEEecCCCC---C--ceE--ECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            478999999999999888765432   1  455  9999999988752         23789999998776653322   


Q ss_pred             ----CCCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceee-eccccCCeeEEEEccCC-cEEEEeeCCCcEEEee
Q 012996           79 ----PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWS  150 (451)
Q Consensus        79 ----~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd  150 (451)
                          +......++++|+|++|+++..  ++.|.+||+.+++.+.. +...  ....+.+.|++ ..+++.+.||.+.+|+
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence                1346789999999999998864  57899999999988877 5422  22335677765 6788888999999998


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeeec-----------
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVF-----------  217 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~-----------  217 (451)
                      +........    .......+..+..++ .+.+.+++  ..++..+.++.+.++|+......  ..+..           
T Consensus       180 ~~~~g~~~~----~~~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  252 (361)
T 2oiz_A          180 LGEDGKVAS----QSRSKQMFSVKDDPI-FIAPALDK--DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV  252 (361)
T ss_dssp             ECTTSSEEE----EEECCCCSCTTTSCB-CSCCEECS--SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred             ECCCCcEee----eccccceEcCCCCce-EEEecccC--CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence            743110000    000001122222222 22335555  45566678899999998755321  22111           


Q ss_pred             ccceeEEEECCCCCEEEEEeC-----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996          218 PSVIDAIALDPAEHVFYAGSR-----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s  285 (451)
                      +.....++++|+++.++++..           .+.|.+||+.+.         +.+.++..+.  +.+++|+| +++|++
T Consensus       253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg~~l~v  321 (361)
T 2oiz_A          253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQRNLMLT  321 (361)
T ss_dssp             ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred             cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCCCEEEE
Confidence            122223789999888887653           348999999886         5677777776  99999999 999998


Q ss_pred             EcCCCcEEEEeCCCC--ceEEEeecCCCCeeEEEEEecCc
Q 012996          286 GSEDGMVRVWDPITH--NIVRMFRLAKGPVNNILVVRRPL  323 (451)
Q Consensus       286 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~~~~  323 (451)
                      ++. +.|.+||..++  +.+.++..+......++++|+|.
T Consensus       322 ~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          322 LDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            887 99999999999  99999866667788999999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=6.4e-20  Score=167.35  Aligned_cols=278  Identities=10%  Similarity=0.035  Sum_probs=182.7

Q ss_pred             CeEEEeecCCC-CCCeEEEEC--ccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC-CCceeee
Q 012996            1 MELLIASSSVA-DTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVK   76 (451)
Q Consensus         1 ~e~~l~s~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~-~~~~~~~   76 (451)
                      |-..|++|++. ++.|.+|++  .+|+....-.........+..++  |+|+|+++++++.+  .|.+|++. +++....
T Consensus         1 ~~~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~   76 (365)
T 1jof_A            1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKNIYGAAMK--KWSSFAVKSPTEIVHE   76 (365)
T ss_dssp             CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSEEEEEEBT--EEEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCEEEEEccc--eEEEEEECCCCCEEEe
Confidence            33445555523 357888765  45654321111011222345566  99999998887764  89999987 6654322


Q ss_pred             ec--CCCCeeEEEECCCCcE--EEEec-------------cCCCEEEEEcC-CCcceeeec----cccCCeeEEEEccCC
Q 012996           77 SL--PAEPIKPIAANSHGTY--IAGGG-------------QSGDIYMWEVA-SGRLLKKWH----AHYRAVTCLVFSEDG  134 (451)
Q Consensus        77 ~~--~~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~  134 (451)
                      ..  ..+.+.+++|+|+|++  ++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|||
T Consensus        77 ~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           77 ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence            21  1234677999999994  55553             68899999997 466544443    245678999999999


Q ss_pred             cEEEEeeC-CCcEEEeeCc-chhhhhhhhcccccceeccc--CCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcC--
Q 012996          135 SFLISGSE-DGCVRIWSLL-TVFEECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL--  207 (451)
Q Consensus       135 ~~l~s~~~-dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~--  207 (451)
                      ++|+++.. ++.|.+|++. ++         ....+..+.  .|...+..++|+|++  +++++++ .++.|.+|++.  
T Consensus       157 ~~l~~~~~~~~~v~~~~~~~~g---------~~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~  225 (365)
T 1jof_A          157 TYLYSADLTANKLWTHRKLASG---------EVELVGSVDAPDPGDHPRWVAMHPTG--NYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTS---------CEEEEEEEECSSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTT
T ss_pred             CEEEEEcCCCCEEEEEEECCCC---------CEEEeeeEecCCCCCCCCEeEECCCC--CEEEEEECCCCeEEEEEEeCC
Confidence            98887654 6799999985 31         111122222  245668899999998  6777666 47899999875  


Q ss_pred             CCcee---eeee-cc------c-------ceeEEE-ECCCCCEEEEEeCCC------cEEEEEccC-CCCCCCCCCceee
Q 012996          208 KGRLL---RNIV-FP------S-------VIDAIA-LDPAEHVFYAGSRDG------SIYIAALNA-ESPSTSSYGMHII  262 (451)
Q Consensus       208 ~~~~~---~~~~-~~------~-------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~  262 (451)
                      +++..   ..+. .+      .       .+..++ |+|+|++|+++..+.      .|.+|++.. +.       ...+
T Consensus       226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-------~~~~  298 (365)
T 1jof_A          226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-------IEKQ  298 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-------EEEE
T ss_pred             CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-------EEEe
Confidence            45542   1222 11      1       478999 999999998876433      899999963 22       1111


Q ss_pred             e-eeccCCcceeEEEEec----CCEEEEEcCC-CcEEEEeCCCC
Q 012996          263 G-SLSDHSKAVTCLAYST----GDLLISGSED-GMVRVWDPITH  300 (451)
Q Consensus       263 ~-~~~~~~~~v~~~~~~~----~~~l~s~~~d-g~i~iwd~~~~  300 (451)
                      . ....+...+..++|+|    +++|++++.+ +.|.+|++...
T Consensus       299 ~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            1 1333455677889998    8899998864 89999998765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=4.7e-20  Score=168.23  Aligned_cols=268  Identities=11%  Similarity=0.074  Sum_probs=181.1

Q ss_pred             ccEEEEEC--CCCceeeee----cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeeeccc-cCCeeEEEEcc
Q 012996           61 GSILYWSW--SKPQVEVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAH-YRAVTCLVFSE  132 (451)
Q Consensus        61 g~i~vw~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~  132 (451)
                      +.|.+|++  .++......    .....+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp   92 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence            45777665  445443221    133478899999999999988887 89999997 77665433211 13466789999


Q ss_pred             CCcE--EEEee-------------CCCcEEEeeCcchhhhhhhhcccccceeccc----CCcCceeEEEEeecCCeeEEE
Q 012996          133 DGSF--LISGS-------------EDGCVRIWSLLTVFEECESQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       133 ~~~~--l~s~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      +|++  ++++.             .+|.+.+|++...          ......+.    .+...+.+++|+|++  ++++
T Consensus        93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~  160 (365)
T 1jof_A           93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET----------GKLEKNVQNYEYQENTGIHGMVFDPTE--TYLY  160 (365)
T ss_dssp             CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT----------CCEEEEEEEEECCTTCCEEEEEECTTS--SEEE
T ss_pred             CCCEEEEEEecCCcceeccceeecCCceEEEEccCCC----------CcCcceEeeEEeCCCCcceEEEECCCC--CEEE
Confidence            9994  55553             6899999998531          11111111    245678899999998  6777


Q ss_pred             Eee-CCCcEEEEEcC-CCcee--eeee---cccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          194 SAS-EDRTCKVWSLL-KGRLL--RNIV---FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       194 s~~-~d~~i~iwd~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      +++ .++.|++||+. +++..  ..+.   +...+..++|+|+|+++++++. ++.|.+|++......... ....+..+
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~  239 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-THHSFPLI  239 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEESS
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-ccceEEcC
Confidence            665 46899999998 67643  2333   2456899999999999988775 689999987642100000 00011122


Q ss_pred             c----cCCc------ceeEEE-Eec-CCEEEEEcCCC------cEEEEeCC-CCceEE---EeecCCCCeeEEEEEe---
Q 012996          266 S----DHSK------AVTCLA-YST-GDLLISGSEDG------MVRVWDPI-THNIVR---MFRLAKGPVNNILVVR---  320 (451)
Q Consensus       266 ~----~~~~------~v~~~~-~~~-~~~l~s~~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~l~~s~---  320 (451)
                      .    +|..      .+..++ |+| +++|++++.+.      .|.+|++. +++...   .+..+...+..++|+|   
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~  319 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence            1    2232      588999 999 88887765432      89999986 566543   2334555678899999   


Q ss_pred             cCceeeeccCC-CCccccccCCC
Q 012996          321 RPLYLNLGSFS-NPHTSSRRHGS  342 (451)
Q Consensus       321 ~~~~l~~~s~d-~~i~iw~~~~~  342 (451)
                      ||++|++++.+ +.|.+|++...
T Consensus       320 dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          320 SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEEEcCCCeEEEEEEchh
Confidence            89999988764 89999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.86  E-value=8.5e-19  Score=157.92  Aligned_cols=276  Identities=13%  Similarity=0.069  Sum_probs=189.6

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  118 (451)
                      +.++.  |++++..++..+.+ +.++.|.  .........+...+.+++|+|+|++++++..++.|.+||..+++.....
T Consensus         8 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            8 LPTLF--YSGKSNSAVPIISE-SELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCBCC--SCGGGGCSSCCCCG-GGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cceee--ecCCccceeEEeec-ccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            45566  99999988888666 8999993  2222233345567899999999998888888899999999888765544


Q ss_pred             ccccCCeeEEEEccCCcEEEEeeCC----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          119 HAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      ..+...+.+++++|+++++++...+    +.|.+||..+..         .........+...+.++++++++  .++++
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~i~~d~~g--~l~v~  151 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN---------LQDIIEDLSTAYCIDDMVFDSKG--GFYFT  151 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS---------CEEEECSSSSCCCEEEEEECTTS--CEEEE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE---------EEEEEccCccCCcccceEECCCC--CEEEE
Confidence            4566789999999999988777666    689999985421         11011111244578899999887  66666


Q ss_pred             eeC------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996          195 ASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (451)
Q Consensus       195 ~~~------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (451)
                      ...      .+.|..+|..+++..........+..++|+|+++.++++ +.++.|++||+.................+.+
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  231 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG  231 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred             eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence            543      356777776655544333334457889999999866555 5578999999864211000000001111222


Q ss_pred             CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC------CeeEEEEEecCceeeeccCCC
Q 012996          268 HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       268 ~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      + ..+..+++++ +.++++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|+.++.++
T Consensus       232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             S-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             C-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            2 4678899999 888887777899999998 5777777765433      689999999987776665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=3.3e-19  Score=177.85  Aligned_cols=311  Identities=13%  Similarity=0.075  Sum_probs=197.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEE--ecceEeeccCcccCCCCCC--------ccEEEEECCCCce
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC--VGQRFLASSQLREQPSASS--------GSILYWSWSKPQV   73 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~d~--------g~i~vw~~~~~~~   73 (451)
                      +|+++   ||+|++||+.+++....+..+......+..  ..  |||||++++.++.+.        +.+.+||+.+++.
T Consensus        30 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~  104 (740)
T 4a5s_A           30 YLYKQ---ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS--ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (740)
T ss_dssp             EEEEE---TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             EEEEc---CCcEEEEECCCCceEEEEechhhhhhcccccceE--ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence            45553   789999999999987777666543333332  55  899999998887641        4567999999887


Q ss_pred             eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-eccccCCe-----------------eEEEEccCCc
Q 012996           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAV-----------------TCLVFSEDGS  135 (451)
Q Consensus        74 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~  135 (451)
                      .....+...+...+|||||+.||.+ .++.|++|++.+++.... ..++...+                 ..+.|||||+
T Consensus       105 ~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~  183 (740)
T 4a5s_A          105 ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT  183 (740)
T ss_dssp             CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred             EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC
Confidence            6555567789999999999999987 468999999988775442 22332222                 3589999999


Q ss_pred             EEEEeeCCC------------------------------------cEEEeeCcc---hhhhhhhhcccccceeccc----
Q 012996          136 FLISGSEDG------------------------------------CVRIWSLLT---VFEECESQRASHLYLHSFT----  172 (451)
Q Consensus       136 ~l~s~~~dg------------------------------------~i~vwd~~~---~~~~~~~~~~~~~~~~~~~----  172 (451)
                      .|+.++.|.                                    .|.+||+.+   +.         ......+.    
T Consensus       184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~---------~~~~~~l~~~~~  254 (740)
T 4a5s_A          184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT---------NATSIQITAPAS  254 (740)
T ss_dssp             EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS---------CCCEEEECCCHH
T ss_pred             EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC---------cceEEEecCCcc
Confidence            999876433                                    245555532   10         00111121    


Q ss_pred             --CCcCceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCCc----ee--eee---ecccce-----eEEEECCCCCE
Q 012996          173 --GHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGR----LL--RNI---VFPSVI-----DAIALDPAEHV  232 (451)
Q Consensus       173 --~~~~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~~--~~~---~~~~~i-----~~~~~~~~~~~  232 (451)
                        +|...+..++|+|++  +.++....    +..|.+||+.+++    +.  ..+   .+...+     ....|+|+|+.
T Consensus       255 ~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~  332 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS  332 (740)
T ss_dssp             HHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred             CCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence              377789999999998  65554432    3479999999887    22  111   133333     37889999998


Q ss_pred             EE-EEe-CCC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCE-EEEEcC----CC--cEEEEeCCCCc
Q 012996          233 FY-AGS-RDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDL-LISGSE----DG--MVRVWDPITHN  301 (451)
Q Consensus       233 l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~s~~~----dg--~i~iwd~~~~~  301 (451)
                      ++ ..+ .+|  .|++||..++.          ...+......|..+..-.++. ++++..    .+  .|...++..+.
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~----------~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~  402 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKD----------CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT  402 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSS----------CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred             EEEEEEcCCCceEEEEEECCCCc----------eEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence            76 554 344  68888887653          223333445565554322444 444443    23  34445555444


Q ss_pred             eEEEeec----CCCCeeEEEEEecCceeeeccCC---CCccccccCC
Q 012996          302 IVRMFRL----AKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRHG  341 (451)
Q Consensus       302 ~~~~~~~----~~~~v~~l~~s~~~~~l~~~s~d---~~i~iw~~~~  341 (451)
                      ....+..    ....+....|||++++++.....   ..+.+++..+
T Consensus       403 ~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~  449 (740)
T 4a5s_A          403 KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN  449 (740)
T ss_dssp             EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred             cceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence            3323432    23568899999999987543322   2345555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=2.8e-18  Score=154.03  Aligned_cols=241  Identities=15%  Similarity=0.140  Sum_probs=184.2

Q ss_pred             CCCeeEEEECCCCcEEEEeccC------------------------CCEEEEEcCCCcceeeec-cccCCeeEEEEccCC
Q 012996           80 AEPIKPIAANSHGTYIAGGGQS------------------------GDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDG  134 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~  134 (451)
                      -..+.+++++|+|+++++...+                        +.|.+||..+++.+..+. .+...+..++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999887776                        479999998898876664 445678999999999


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc---------cCCcCceeEEEEee-cCCeeEEEEee-CCCcEEE
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---------TGHTLRITDIVIGY-GGVSATIVSAS-EDRTCKV  203 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~i~~~~-~~~~~~l~s~~-~d~~i~i  203 (451)
                      +++++...++.|++||....          ...+..+         ..+.....++++++ ++  .++++.+ .++.|++
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~----------~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSK----------EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--AVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCS----------SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--CEEEEECSSCCEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCC----------eEEEEEecccCCCCCCccccCCCcEEEEeCCCC--eEEEEeCCCCCeEEE
Confidence            98888888999999998431          0012222         23455688999998 66  6777775 6899999


Q ss_pred             EEcCCCceeeeeecc-----------cceeEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee--ccCC
Q 012996          204 WSLLKGRLLRNIVFP-----------SVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHS  269 (451)
Q Consensus       204 wd~~~~~~~~~~~~~-----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~  269 (451)
                      || .++..+..+...           ..+..++++|+ +.++++...++.|++|+..++.         .+..+  ..+.
T Consensus       171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~---------~~~~~~~~~~~  240 (329)
T 3fvz_A          171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE---------FVREIKHASFG  240 (329)
T ss_dssp             EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEEECCTTTT
T ss_pred             Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc---------EEEEEeccccC
Confidence            99 567777766421           23789999998 6777777788899999998543         23333  3456


Q ss_pred             cceeEEEEecCCEEEEEc-------CCCcEEEEeCCCCceEEEee---cCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          270 KAVTCLAYSTGDLLISGS-------EDGMVRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       270 ~~v~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ..+.+++++|+..+++.+       .+..|++||..+++.+..+.   .+......|+++|+|..+++...++.|++|+.
T Consensus       241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            678888888843333333       34589999999999999884   56677999999999988899899999999998


Q ss_pred             CCC
Q 012996          340 HGS  342 (451)
Q Consensus       340 ~~~  342 (451)
                      .+.
T Consensus       321 ~~~  323 (329)
T 3fvz_A          321 TEK  323 (329)
T ss_dssp             EEC
T ss_pred             Ccc
Confidence            754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=1e-19  Score=168.03  Aligned_cols=296  Identities=7%  Similarity=-0.123  Sum_probs=192.9

Q ss_pred             EEEECccCceeeeeecCCCC--CCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCe-eEEEECC
Q 012996           16 GCWDLESGAEQLRYKSCASP--PHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPI-KPIAANS   90 (451)
Q Consensus        16 ~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v-~~~~~~~   90 (451)
                      ...|..++..+..+..+...  ...+..++  |+|+|++++.+...+  ..|.+|+..+++......+...+ ..+.|+|
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~--~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp   90 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKC--FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST   90 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCc--CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence            34578888887776544222  11134455  999999988765432  47888898887765444333333 3488999


Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE-------------------EEEccCCcEEEEe-----eCCCcE
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-------------------LVFSEDGSFLISG-----SEDGCV  146 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~s~-----~~dg~i  146 (451)
                      ||++|+.++.++.|++||+.+++.......+......                   +.|+|+++.++.+     ..+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            9999999888889999999888766555544432222                   3456666665544     356688


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCC------CcEEEEEcCCCceeeeeec--
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVF--  217 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~--  217 (451)
                      .+||+.++           .. ..+..+...+..+.|+| ++  ..|+..+.+      ..|.+||+..++......+  
T Consensus       171 ~~~d~~~g-----------~~-~~~~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (396)
T 3c5m_A          171 IKVDIETG-----------EL-EVIHQDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE  236 (396)
T ss_dssp             EEEETTTC-----------CE-EEEEEESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT
T ss_pred             EEEECCCC-----------cE-EeeccCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC
Confidence            99998542           11 12224566788899998 65  555554433      3688899876653333322  


Q ss_pred             ccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEc---
Q 012996          218 PSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGS---  287 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~---  287 (451)
                      ...+..++|+|+++.|+.++.+     +.|++||+.++..       ..+....+    .. +.|+|  +.++++++   
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence            2357889999999987776543     4499999987541       22222221    22 78887  66777654   


Q ss_pred             -------------CCCcEEEEeCCCCceEEEeecCCC-----------CeeEEEEEecCceeeeccC-CCCccccccC
Q 012996          288 -------------EDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGSF-SNPHTSSRRH  340 (451)
Q Consensus       288 -------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~s~-d~~i~iw~~~  340 (451)
                                   .++.|.+||+.+++. ..+..+..           .+..+.|+|+|+.|+.++. ++...+|.+.
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                         347899999988765 34554444           2677899999998877664 5666666543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=6.3e-19  Score=174.06  Aligned_cols=288  Identities=9%  Similarity=-0.077  Sum_probs=187.3

Q ss_pred             EEEeec--CCCCCCeEEEECccCceeeeeecCCCCCC-ce-----EEecceEe--eccCc-ccCCCCCCccEEEEECC--
Q 012996            3 LLIASS--SVADTGIGCWDLESGAEQLRYKSCASPPH-GL-----ACVGQRFL--ASSQL-REQPSASSGSILYWSWS--   69 (451)
Q Consensus         3 ~~l~s~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v-----~~~~~~~~--~~~~~-l~~~~~d~g~i~vw~~~--   69 (451)
                      .++++.  + .++...||....+.....+..+..... .+     ....  |+  |||+. |+.++..+..|.+|+..  
T Consensus        36 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~SPDg~~~la~~~~~~~~l~~~~~~~~  112 (662)
T 3azo_A           36 VWWVAPRPA-EAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWA--GVPRPAGGPLLVFTHFGDQRLYAFEPDAP  112 (662)
T ss_dssp             EEEEEEETT-TTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEE--EECCSSSSCEEEEEBTTTCCEEEECTTST
T ss_pred             EEEEecCcc-cCCcEEEEEECCCCCcceeCCCCccccccccccCCccce--eeeecCCCeEEEEEECCCCeEEEEcCCCC
Confidence            345555  5 688999999655555555544332211 00     0222  54  99999 77766544778888876  


Q ss_pred             C-Cceeeeec-----CCCCeeEEEECCCCcEEEEeccC----------CCEEEEEcCC------Ccceeeec-cccCCee
Q 012996           70 K-PQVEVKSL-----PAEPIKPIAANSHGTYIAGGGQS----------GDIYMWEVAS------GRLLKKWH-AHYRAVT  126 (451)
Q Consensus        70 ~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~  126 (451)
                      + +.......     +...+..++|+|||+.|++++.+          ..|++||+.+      ++. ..+. .+...+.
T Consensus       113 g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~  191 (662)
T 3azo_A          113 GGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVT  191 (662)
T ss_dssp             TCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEEC
T ss_pred             CCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCccc
Confidence            3 44333333     45678899999999999988876          5799999987      544 4444 5567788


Q ss_pred             EEEEccCCcEEEEeeCC--------CcEEEeeCc-chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996          127 CLVFSEDGSFLISGSED--------GCVRIWSLL-TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE  197 (451)
Q Consensus       127 ~~~~~~~~~~l~s~~~d--------g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~  197 (451)
                      .++|+|||++|+.++.+        ..|.+||+. ++.        ..........|...+..+.|+|++  +++++++.
T Consensus       192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--------~~~~~~l~~~~~~~~~~~~~spdg--~l~~~~~~  261 (662)
T 3azo_A          192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR--------FADTRTLLGGPEEAIAQAEWAPDG--SLIVATDR  261 (662)
T ss_dssp             CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC--------EEEEEEEEEETTBCEEEEEECTTS--CEEEEECT
T ss_pred             CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc--------ccccEEeCCCCCceEcceEECCCC--eEEEEECC
Confidence            89999999999987755        379999985 210        002222334456788999999998  67888888


Q ss_pred             CC--cEEEEEcCCCceeeeeecccc---------eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          198 DR--TCKVWSLLKGRLLRNIVFPSV---------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       198 d~--~i~iwd~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                      ++  .|.+||+.+++......+...         +..++|+|++.++++++. +.+++|.++...        ..+..+.
T Consensus       262 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~--------~~~~~l~  332 (662)
T 3azo_A          262 TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES--------GELVDAA  332 (662)
T ss_dssp             TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT--------TEEEECC
T ss_pred             CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC--------CcEEEec
Confidence            88  666677666665443332221         467899999999999998 999999554321        1245566


Q ss_pred             cCCcceeEE-EEecCCEE-EEEcCCC--cEEEEeCCCCceEEEeecCCCCe
Q 012996          267 DHSKAVTCL-AYSTGDLL-ISGSEDG--MVRVWDPITHNIVRMFRLAKGPV  313 (451)
Q Consensus       267 ~~~~~v~~~-~~~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v  313 (451)
                      .|...+..+ +++++.++ ++++.+.  .|.+||+.+++.......+...+
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~  383 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPV  383 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSS
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccC
Confidence            677777777 55443333 3444444  46666777776554434443333

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.4e-17  Score=146.56  Aligned_cols=234  Identities=9%  Similarity=0.181  Sum_probs=175.4

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec------cccCCeeEEEE-ccCCcEEEEeeC-CCcEEEeeC
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVF-SEDGSFLISGSE-DGCVRIWSL  151 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~s~~~-dg~i~vwd~  151 (451)
                      -..+.+++++++++++++...++.|.+||.. ++.+..+.      ++...+.++++ .+++.++++... ++.|.+||.
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~  107 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  107 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence            3568999999999988888888999999976 66665553      24467889999 467776666543 789999995


Q ss_pred             cchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEEC
Q 012996          152 LTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALD  227 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~  227 (451)
                      ..            ..+..+. .+...+.++++.+++  +++++...++.|.+||. .++.+..+.   ....+..++++
T Consensus       108 ~g------------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~  172 (286)
T 1q7f_A          108 YG------------QFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN  172 (286)
T ss_dssp             TS------------CEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEEC
T ss_pred             CC------------cEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEEC
Confidence            22            1222222 234567899998887  77777778899999996 466666554   23468899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--CCcceeEEEEec-CCEEEEEcCCC-cEEEEeCCCCceE
Q 012996          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNIV  303 (451)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~l~s~~~dg-~i~iwd~~~~~~~  303 (451)
                      |+++++++...++.|++||....          .+..+..  +...+..+++++ +.++++...++ .|.+||. +++.+
T Consensus       173 ~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~  241 (286)
T 1q7f_A          173 DKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI  241 (286)
T ss_dssp             SSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred             CCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEE
Confidence            99998887788999999997542          2333332  346789999999 88888887776 9999995 57777


Q ss_pred             EEeecCCC--CeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          304 RMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       304 ~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ..+..+..  .+.+++++|+|+++++ +.|+.|++|+...
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          242 SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            77776543  4779999999987777 5789999998754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=2.7e-18  Score=155.79  Aligned_cols=257  Identities=10%  Similarity=0.022  Sum_probs=179.5

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc----------CCCEEEEEcCCCcceeeeccc------cCC
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ----------SGDIYMWEVASGRLLKKWHAH------YRA  124 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~------~~~  124 (451)
                      +.|.+||..+++........... .++|+|||+++++++.          ++.|.+||..+++.+..+...      ...
T Consensus        31 ~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~  109 (361)
T 2oiz_A           31 SRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY  109 (361)
T ss_dssp             CEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred             CeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence            79999999888765444333333 9999999999988762          567999999998888777532      345


Q ss_pred             eeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996          125 VTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (451)
Q Consensus       125 v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i  201 (451)
                      ...++|+|||++|+++..  ++.|.+||+.+.           ..+.. +.. . ....+.+.|.+. ..+++.+.||.+
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-----------~~~~~~i~~-~-~~~~v~~~p~~~-~~~~~~~~dg~~  175 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-----------DYVEDVTAA-A-GCWSVIPQPNRP-RSFMTICGDGGL  175 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTT-----------EEEEEEGGG-T-TEEEEEECTTSS-SEEEEEETTSSE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCC-----------cEEEEEecC-C-CcceeEEcCCCC-eeEEEECCCCcE
Confidence            678999999999998874  578999999652           23333 221 1 112245556553 577888899999


Q ss_pred             EEEEcCC-Cceeee------eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc------C
Q 012996          202 KVWSLLK-GRLLRN------IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD------H  268 (451)
Q Consensus       202 ~iwd~~~-~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~  268 (451)
                      .+|++.. ++....      +........+.++|++..++..+.++.++++|+.....       .....+.-      +
T Consensus       176 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-------~~~~~~~~~~~~~~~  248 (361)
T 2oiz_A          176 LTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-------KVDGPWSLLNDEDKA  248 (361)
T ss_dssp             EEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-------EEEEEEESCCHHHHH
T ss_pred             EEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-------eecccccccCccccc
Confidence            9999865 554411      11111112233356677777778889999999875431       11111100      0


Q ss_pred             ----CcceeEEEEec-CCEEEEEcC-----------CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          269 ----SKAVTCLAYST-GDLLISGSE-----------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       269 ----~~~v~~~~~~~-~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                          ......++++| ++.++++..           .+.|.+||+.+++.+.++..+.  ..+++|+|||++|++++. +
T Consensus       249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~  325 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G  325 (361)
T ss_dssp             TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred             cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence                01122378899 677666543           3479999999999999999876  999999999999998887 9


Q ss_pred             CccccccCCC
Q 012996          333 PHTSSRRHGS  342 (451)
Q Consensus       333 ~i~iw~~~~~  342 (451)
                      .|.+||..+.
T Consensus       326 ~v~v~D~~t~  335 (361)
T 2oiz_A          326 NVNVYDISQP  335 (361)
T ss_dssp             CEEEEECSSS
T ss_pred             eEEEEECCCC
Confidence            9999998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.81  E-value=2.2e-17  Score=157.31  Aligned_cols=320  Identities=11%  Similarity=0.048  Sum_probs=221.7

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceeeeecCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEVKSLPA   80 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~~~~~~   80 (451)
                      .++++.. .++.|.++|..+++.+.++....    ....+.  |+|+|+++++++.+ +.|.+||+.  +.+........
T Consensus       168 ~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~----~p~~v~--~SpDGr~lyv~~~d-g~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          168 LFSVTLR-DAGQIALIDGSTYEIKTVLDTGY----AVHISR--LSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             EEEEEET-TTTEEEEEETTTCCEEEEEECSS----CEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEECC
T ss_pred             eEEEEeC-CCCeEEEEECCCCeEEEEEeCCC----CccceE--ECCCCCEEEEEcCC-CeEEEEECCCCCCcEeEEEecC
Confidence            4667777 89999999999999998886432    344566  99999999988876 999999995  66665555455


Q ss_pred             CCeeEEEEC----CCCcEEEEecc-CCCEEEEEcCCCcceeeecc----------ccC-CeeEEEEccCCcE-EEEeeCC
Q 012996           81 EPIKPIAAN----SHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HYR-AVTCLVFSEDGSF-LISGSED  143 (451)
Q Consensus        81 ~~v~~~~~~----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~s~~~d  143 (451)
                      .....++|+    |||+++++++. ++.|.|+|..+.+.+..+..          |.. .+..+..++++.. ++....+
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            567899999    69999887765 58899999999988877642          112 5778888887554 4555667


Q ss_pred             CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe-eCCCcEEEEEcCCCceeeeeec-c---
Q 012996          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLRNIVF-P---  218 (451)
Q Consensus       144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~-~---  218 (451)
                      |.|.++|..+.         ....+..+ .......++.|++++  ++++++ ..++.|.++|+.+++....+.. .   
T Consensus       320 g~v~~vd~~~~---------~~~~v~~i-~~~~~~~d~~~~pdg--r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P  387 (567)
T 1qks_A          320 GKILLVDYTDL---------NNLKTTEI-SAERFLHDGGLDGSH--RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  387 (567)
T ss_dssp             TEEEEEETTCS---------SEEEEEEE-ECCSSEEEEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CeEEEEecCCC---------ccceeeee-eccccccCceECCCC--CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence            99999998541         11111122 123345678898888  666554 4688999999999987766643 1   


Q ss_pred             cceeEEE-ECCCCCEEE-EEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC------
Q 012996          219 SVIDAIA-LDPAEHVFY-AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------  288 (451)
Q Consensus       219 ~~i~~~~-~~~~~~~l~-~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~------  288 (451)
                      .+-.... ++|++..++ ++. .++.|.++|......  ....++.+.++......-..+..+| ++++.+...      
T Consensus       388 hpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~--~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          388 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH--PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             CCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC--ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence            1111222 578755544 443 468999999987431  1222455666665444445577899 888888663      


Q ss_pred             -CCcEEEEeCCCC-----c-eEEEee--------cCCCCeeEEEEEecCceeeecc-----CCCCccccccCCCCC
Q 012996          289 -DGMVRVWDPITH-----N-IVRMFR--------LAKGPVNNILVVRRPLYLNLGS-----FSNPHTSSRRHGSQL  344 (451)
Q Consensus       289 -dg~i~iwd~~~~-----~-~~~~~~--------~~~~~v~~l~~s~~~~~l~~~s-----~d~~i~iw~~~~~~~  344 (451)
                       .++|.++|+.+.     . .+..+.        .....+..+.|+|+|.++..+.     .++.|.++|..+.++
T Consensus       466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence             458999999876     2 123332        1234789999999999887653     378899988776544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=3e-18  Score=171.02  Aligned_cols=280  Identities=10%  Similarity=0.001  Sum_probs=177.6

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC-----CeeEEEECCCCcEEEEeccC---------CCEEEEEcC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE-----PIKPIAANSHGTYIAGGGQS---------GDIYMWEVA  110 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~  110 (451)
                      |+|+|++++++  + |.|++||+.+++.... ..+..     ....++|||||++|+.++.+         +.+.+||+.
T Consensus        24 w~~dg~~~~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~  100 (740)
T 4a5s_A           24 WISDHEYLYKQ--E-NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (740)
T ss_dssp             ECSSSEEEEEE--T-TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ECCCCcEEEEc--C-CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence            99999998886  5 9999999998876433 22321     22348899999999998775         567899999


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc---------CceeEE
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------LRITDI  181 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~i  181 (451)
                      +++.. .+..|.+.+...+|||||+.|+.+. ++.|.+|++.++.......  .......+.++.         +...++
T Consensus       101 ~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A          101 KRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             TTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcce
Confidence            98755 4566778899999999999998885 6799999986532110000  000000111222         122358


Q ss_pred             EEeecCCeeEEEEeeCCC------------------------------------cEEEEEcCC---Cc--eeeeee----
Q 012996          182 VIGYGGVSATIVSASEDR------------------------------------TCKVWSLLK---GR--LLRNIV----  216 (451)
Q Consensus       182 ~~~~~~~~~~l~s~~~d~------------------------------------~i~iwd~~~---~~--~~~~~~----  216 (451)
                      .|+|++  +.|+.++.|.                                    .|++||+.+   ++  ....+.    
T Consensus       177 ~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          177 WWSPNG--TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             EECTTS--SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             EECCCC--CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            899998  7777764321                                    588899988   73  122222    


Q ss_pred             ---cccceeEEEECCCCCEEEEEeC----CCcEEEEEccCCCCCCCCCCceeeeee--ccCCccee-----EEEEec-CC
Q 012996          217 ---FPSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVT-----CLAYST-GD  281 (451)
Q Consensus       217 ---~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~-----~~~~~~-~~  281 (451)
                         +...+..++|+|+++.++....    +..|++||+.++.....   ...+..+  .+|...|.     ...|+| |+
T Consensus       255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEMSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence               4556889999999997665533    33799999988641000   0001111  34555554     788999 88


Q ss_pred             EEE-EEc-CCC--cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee-ccC----CCCcccccc
Q 012996          282 LLI-SGS-EDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL-GSF----SNPHTSSRR  339 (451)
Q Consensus       282 ~l~-s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~s~----d~~i~iw~~  339 (451)
                      .|+ ..+ .+|  .|.+||+.+++.. .+......|..+.+ +|++.|+. ++.    .+...+|.+
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence            766 554 344  5888998876654 44444555666543 44655543 333    234455544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=4.4e-18  Score=156.66  Aligned_cols=236  Identities=11%  Similarity=0.016  Sum_probs=163.7

Q ss_pred             EEECCCCcEEEEecc-CCC--EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           86 IAANSHGTYIAGGGQ-SGD--IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        86 ~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      .+|+|||++|+.++. +|.  |.+||+.+++.......+...+..+.|+||++.|+.++.++.|.+||+.++        
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g--------  112 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL--------  112 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC--------
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC--------
Confidence            789999999988877 663  888999988877777777666667889999999999999999999999652        


Q ss_pred             ccccceecccCCcCceeEEEE--eecCCeeEEEEe----------------------eCCCcEEEEEcCCCceeeeeecc
Q 012996          163 ASHLYLHSFTGHTLRITDIVI--GYGGVSATIVSA----------------------SEDRTCKVWSLLKGRLLRNIVFP  218 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~--~~~~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~  218 (451)
                         ........+...+....+  ++++  ..++..                      ..+..|.+||+.+++......+.
T Consensus       113 ---~~~~~~~~~~~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~  187 (388)
T 3pe7_A          113 ---EENVVYQVPAEWVGYGTWVANSDC--TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN  187 (388)
T ss_dssp             ---CEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES
T ss_pred             ---cceeeeechhhcccccceeECCCC--CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC
Confidence               122223334444444444  4554  666532                      24578999999998876666677


Q ss_pred             cceeEEEECC-CCCEEEEEeCC------CcEEEEEccCCCCCCCCCCceeeeeeccCC--cceeEEEEec-CCEEEEEcC
Q 012996          219 SVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHS--KAVTCLAYST-GDLLISGSE  288 (451)
Q Consensus       219 ~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~-~~~l~s~~~  288 (451)
                      ..+..++|+| +++.|+....+      ..|+++|.....          ...+..+.  ..+....|+| |+.|+..+.
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------MRKVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----------CEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----------eEEeeeCCCCcccccceECCCCCEEEEEec
Confidence            7889999999 99988877653      378888876543          22233333  3577889999 887755443


Q ss_pred             -CC----cEEEEeCCCCceEE--EeecCCC---CeeEEEEEecCceeeec---------cCCCCccccccCCCCC
Q 012996          289 -DG----MVRVWDPITHNIVR--MFRLAKG---PVNNILVVRRPLYLNLG---------SFSNPHTSSRRHGSQL  344 (451)
Q Consensus       289 -dg----~i~iwd~~~~~~~~--~~~~~~~---~v~~l~~s~~~~~l~~~---------s~d~~i~iw~~~~~~~  344 (451)
                       ++    .|.+||+.+++...  .+..+..   ....+.|+|||+.|+..         ..+..|.+|+..++..
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence             22    39999999887433  3332100   12234799999999864         4456799999887543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=5.9e-18  Score=167.13  Aligned_cols=282  Identities=12%  Similarity=0.023  Sum_probs=183.0

Q ss_pred             CCCceEEecceEeeccCcccCC--CCCCccEEEEECC-CCceeeeecCCCCee---------EEEEC--CCCcE-EEEec
Q 012996           35 PPHGLACVGQRFLASSQLREQP--SASSGSILYWSWS-KPQVEVKSLPAEPIK---------PIAAN--SHGTY-IAGGG   99 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~--~~d~g~i~vw~~~-~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~   99 (451)
                      +...+..+.  +++++-+++..  +.+ +...||... .+.......+...+.         ...|+  |||+. |+.++
T Consensus        22 ~~~~~~~~~--~s~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           22 RSGRPACVG--AVGDEVWWVAPRPAEA-GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             TCSCCEEEE--EETTEEEEEEEETTTT-TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             cCCccceeE--EcCCeEEEEecCcccC-CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            345666777  88776666665  334 889999853 333333333444555         56565  99998 76654


Q ss_pred             c-CCCEEEEEcC--CCcceeeecc-----ccCCeeEEEEccCCcEEEEeeCC----------CcEEEeeCcchhhhhhhh
Q 012996          100 Q-SGDIYMWEVA--SGRLLKKWHA-----HYRAVTCLVFSEDGSFLISGSED----------GCVRIWSLLTVFEECESQ  161 (451)
Q Consensus       100 ~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~~~~~~~~  161 (451)
                      . +..|+++++.  .......+..     |...+.+++|+|||+.|++++.+          ..|.+||+.+....    
T Consensus        99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----  174 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA----  174 (662)
T ss_dssp             TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT----
T ss_pred             CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc----
Confidence            3 5667777765  2033444544     66778999999999999988876          58999998541000    


Q ss_pred             cccccceeccc-CCcCceeEEEEeecCCeeEEEEeeCC--------CcEEEEEcC-CC---ceeeeee-cccceeEEEEC
Q 012996          162 RASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLL-KG---RLLRNIV-FPSVIDAIALD  227 (451)
Q Consensus       162 ~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~-~~~~i~~~~~~  227 (451)
                        .......+. .+...+..++|+|++  ++|+.++.+        ..|++||+. ++   +...... +...+..++|+
T Consensus       175 --~~~~~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s  250 (662)
T 3azo_A          175 --DRSAVRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA  250 (662)
T ss_dssp             --CGGGSEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred             --cCCceeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence              001123334 556678889999998  788877654        379999998 56   3333333 35789999999


Q ss_pred             CCCCEEEEEeCCC--cEEEEEccCCCCCCCCCCceeeeeeccCCcc--------eeEEEEec-CCEEEEEcCCCcEEEE-
Q 012996          228 PAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKA--------VTCLAYST-GDLLISGSEDGMVRVW-  295 (451)
Q Consensus       228 ~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~-~~~l~s~~~dg~i~iw-  295 (451)
                      |+|++++++..++  .|++||+.++.         .......+...        +..++|+| +.++++++. +.++|| 
T Consensus       251 pdg~l~~~~~~~~~~~l~~~~~~~~~---------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          251 PDGSLIVATDRTGWWNLHRVDPATGA---------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             TTSCEEEEECTTSSCEEEEECTTTCC---------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             CCCeEEEEECCCCCeEEEEEECCCCc---------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            9999888888888  56666654432         11111112111        56789998 889999988 999999 


Q ss_pred             -eCCCCceEEEeecCCCCeeEE-EEEecCceeeeccCCCCccccc
Q 012996          296 -DPITHNIVRMFRLAKGPVNNI-LVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       296 -d~~~~~~~~~~~~~~~~v~~l-~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                       |..+++ +..+..|.+.+..+ +++++.-++++++.+....+|.
T Consensus       321 ~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          321 LDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             EECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence             555554 67788887778776 4443333445555555444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=1e-16  Score=140.98  Aligned_cols=237  Identities=14%  Similarity=0.167  Sum_probs=170.7

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec------CCCCeeEEEE-CCCCcEEEEecc-CCCEEE
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL------PAEPIKPIAA-NSHGTYIAGGGQ-SGDIYM  106 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~i  106 (451)
                      +......++  +++++.++++...+ +.|.+||.+.........      +...+..+++ .++++++++... ++.|.+
T Consensus        28 ~~~~p~~v~--~~~~g~l~v~~~~~-~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           28 QFTEPSGVA--VNAQNDIIVADTNN-HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             CBSCEEEEE--ECTTCCEEEEEGGG-TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             ccCCCceEE--ECCCCCEEEEECCC-CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            345567777  89999877766665 899999987443322211      2246889999 577877777643 789999


Q ss_pred             EEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc--cCCcCceeEEEE
Q 012996          107 WEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVI  183 (451)
Q Consensus       107 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~  183 (451)
                      || .+++.+..+. .+...+.+++++++++++++...++.|.+||...            ..+..+  ..+...+.++++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------------~~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC------------CEEEEeCCCCccCCcEEEEE
Confidence            99 6777776663 3446789999999999888877889999999632            112222  134456889999


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---cceeEEEECCCCCEEEEEeCCC-cEEEEEccCCCCCCCCCCc
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGM  259 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~  259 (451)
                      ++++  +++++...++.|++||. .++.+..+...   ..+..++++|++.++++...++ .|.+||....         
T Consensus       172 ~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~---------  239 (286)
T 1q7f_A          172 NDKQ--EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ---------  239 (286)
T ss_dssp             CSSS--EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC---------
T ss_pred             CCCC--CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC---------
Confidence            9887  77777778999999997 45556555432   5688999999998888887776 9999996432         


Q ss_pred             eeeeeeccCC--cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996          260 HIIGSLSDHS--KAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       260 ~~~~~~~~~~--~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  301 (451)
                       .+..+..+.  ..+.+++++| +.++++ +.|+.|++|++....
T Consensus       240 -~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          240 -LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             -EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             -EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence             233333332  3478999999 776666 679999999986543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.78  E-value=3.1e-17  Score=148.55  Aligned_cols=251  Identities=7%  Similarity=0.063  Sum_probs=170.8

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC----ccEEEEECCCCceeeeecCCCCeeEEE
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIA   87 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~~~~v~~~~   87 (451)
                      ++.|.+||+.+++.. .+       ..+....  |+|+|+.|+.++.++    ..|.+|++.+++......... +..++
T Consensus        42 ~~~l~~~d~~~~~~~-~l-------~~~~~~~--~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~  110 (347)
T 2gop_A           42 ENTIVIENLKNNARR-FI-------ENATMPR--ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLE  110 (347)
T ss_dssp             EEEEEEEETTTCCEE-EE-------ESCEEEE--ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEE
T ss_pred             cceEEEEeCCCCceE-Ec-------ccCCCeE--ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cccee
Confidence            567999999887653 33       3355666  999999998876532    348888888776554443334 99999


Q ss_pred             ECCCCcEEEEeccC---------------------------CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996           88 ANSHGTYIAGGGQS---------------------------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (451)
Q Consensus        88 ~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  140 (451)
                      |+|||+.|+.++.+                           ..|++||+.+++.+..+.. . .+..+.|+||| +++++
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE
Confidence            99999998887642                           5699999988876455544 3 78899999999 77777


Q ss_pred             eCCC-------cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC--------CcEEEEE
Q 012996          141 SEDG-------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--------RTCKVWS  205 (451)
Q Consensus       141 ~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d--------~~i~iwd  205 (451)
                      ..++       ...+|.+.++         .   ...+..+ ..+..+  +|++  +.|+.++.+        ..|.+||
T Consensus       188 ~~~~~~~~~~~~~~l~~~d~~---------~---~~~l~~~-~~~~~~--spdg--~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWEDG---------K---EEKMFEK-VSFYAV--DSDG--ERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEETT---------E---EEEEEEE-ESEEEE--EECS--SCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             ecccccccccccccEEEeCCC---------c---eEEeccC-cceeeE--CCCC--CEEEEEEccccCCccccceEEEEC
Confidence            6542       4456655321         1   1122223 344443  7887  667666543        3688888


Q ss_pred             cCCCceeeeee-cccceeE-EEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996          206 LLKGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (451)
Q Consensus       206 ~~~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l  283 (451)
                        +++...... +...+.. +.|+ ++ ++++++.++.+++| +.++         .. ..+..+...|.+++|+| .++
T Consensus       251 --~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---------~~-~~~~~~~~~v~~~~~s~-~~~  314 (347)
T 2gop_A          251 --GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---------EI-KPIAKGRHWIMGFDVDE-IVV  314 (347)
T ss_dssp             --SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---------SE-EEEECSSSEEEEEEESS-SEE
T ss_pred             --CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---------ce-EEEecCCCeEEeeeeeC-cEE
Confidence              555443333 4567776 8999 88 88899999999999 8732         22 23334577899999999 888


Q ss_pred             EEEcCCCcE-EEEeCCCCceEEEeecCCC
Q 012996          284 ISGSEDGMV-RVWDPITHNIVRMFRLAKG  311 (451)
Q Consensus       284 ~s~~~dg~i-~iwd~~~~~~~~~~~~~~~  311 (451)
                      ++++.++.. .+|.+. ++ ...+..|..
T Consensus       315 ~~~~~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          315 YLKETATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             EEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             EEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence            888877764 777765 54 445555544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=1.7e-16  Score=142.20  Aligned_cols=279  Identities=8%  Similarity=-0.032  Sum_probs=188.4

Q ss_pred             CCCCeEEEECccCceeeeeec---CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEE
Q 012996           11 ADTGIGCWDLESGAEQLRYKS---CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIA   87 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~   87 (451)
                      .+++|.+||..+++....+..   ..........+.  +. .++..++.. .++.|.+||..+.+..........+..++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~~-~~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~~p~~i~   90 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--IR-DGIGWIVVN-NSHVIFAIDINTFKEVGRITGFTSPRYIH   90 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--EE-TTEEEEEEG-GGTEEEEEETTTCCEEEEEECCSSEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--EE-CCEEEEEEc-CCCEEEEEECcccEEEEEcCCCCCCcEEE
Confidence            389999999999988765421   111112233343  42 333333333 34899999999888765555567889999


Q ss_pred             ECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc-----CCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhh
Q 012996           88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-----RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        88 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~  161 (451)
                      ++++++.+++...++.|.+||..+++....+....     .....+++ .++..+++.. .++.|.++|+.+.       
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~-------  162 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD-------  162 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT-------
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC-------
Confidence            99998655554478999999999998877665333     14567777 4444444433 4889999999652       


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCC----------CcEEEEEcCCCceeeeeec--ccceeEEEECCC
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED----------RTCKVWSLLKGRLLRNIVF--PSVIDAIALDPA  229 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~  229 (451)
                          .....+.. ......+++++++  ++++++..+          +.|.++|..+++....+..  ......++++|+
T Consensus       163 ----~~~~~i~~-g~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          163 ----KVVDELTI-GIQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             ----EEEEEEEC-SSCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred             ----eEEEEEEc-CCCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence                22222222 2234567888877  666666554          7899999999988877764  346899999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEE----cCCCcEEEEeCCCCceE
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISG----SEDGMVRVWDPITHNIV  303 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~----~~dg~i~iwd~~~~~~~  303 (451)
                      ++.|+++..  .|.+||..+.....       ...+..+......++++|  +.++++.    ..++.|.+||.. ++.+
T Consensus       236 ~~~lyv~~~--~v~~~d~~t~~~~~-------~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          236 RDTLYWINN--DIWRMPVEADRVPV-------RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             SCEEEEESS--SEEEEETTCSSCCS-------SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             CCEEEEEcc--EEEEEECCCCceee-------eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            999998765  89999998764211       011111246788999998  5555555    578999999988 9999


Q ss_pred             EEeecCCCCeeEEEEE
Q 012996          304 RMFRLAKGPVNNILVV  319 (451)
Q Consensus       304 ~~~~~~~~~v~~l~~s  319 (451)
                      .++.... .-..++|-
T Consensus       306 ~~i~~G~-~P~~~~~~  320 (328)
T 3dsm_A          306 DEFYVGI-IPGAFCWK  320 (328)
T ss_dssp             EEEEEEE-SEEEEEEE
T ss_pred             EEEEecc-CcceEEEe
Confidence            8887532 23445543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.78  E-value=5.6e-17  Score=146.84  Aligned_cols=239  Identities=13%  Similarity=0.107  Sum_probs=162.2

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---C--CEEEEEcCCCcceeeeccccCCeeEEEEccCCc
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS  135 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  135 (451)
                      +.|.+|++.++.....    ..+..++|+|||++|+.++.+   +  .|.+|++.+++.......+ . +..+.|+|||+
T Consensus        43 ~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~  116 (347)
T 2gop_A           43 NTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSR  116 (347)
T ss_dssp             EEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSS
T ss_pred             ceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCC
Confidence            7899999988765433    568899999999999887654   2  3888898887765554433 3 89999999999


Q ss_pred             EEEEeeCC---------------------------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996          136 FLISGSED---------------------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (451)
Q Consensus       136 ~l~s~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (451)
                      .|+.++.+                           ..|.+||+.++           ..+..+.. . .+..+.|+|++ 
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-----------~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-----------EVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-----------EEEEEEEE-E-TTCEEEEETTE-
T ss_pred             EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-----------eEEeeecC-C-CcccccCCCCe-
Confidence            98887642                           56888998542           11122222 2 67788898875 


Q ss_pred             eeEEEEeeCCC-------cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC--------CcEEEEEccCCCCC
Q 012996          189 SATIVSASEDR-------TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--------GSIYIAALNAESPS  253 (451)
Q Consensus       189 ~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~  253 (451)
                        ++++++.++       ...+|.+.+++......+ ..+..  ++|+|+.|+.++.+        ..|++||  ++   
T Consensus       183 --~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---  252 (347)
T 2gop_A          183 --IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---  252 (347)
T ss_dssp             --EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---
T ss_pred             --EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CC---
Confidence              666665442       334444435544332223 44444  38999988877654        3678887  32   


Q ss_pred             CCCCCceeeeeeccCCcceeE-EEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          254 TSSYGMHIIGSLSDHSKAVTC-LAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                            .......+|...+.. +.|+ +.++++++.++.++|| +.+++.. .+..+.+.|.+++|+|  .++++++.++
T Consensus       253 ------~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          253 ------EVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             ------CEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred             ------ceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence                  222334456677886 8888 4488889999999999 8766654 4444577899999999  5666666666


Q ss_pred             Cc-cccccC
Q 012996          333 PH-TSSRRH  340 (451)
Q Consensus       333 ~i-~iw~~~  340 (451)
                      .. .+|...
T Consensus       322 ~~~~l~~~~  330 (347)
T 2gop_A          322 RLRELFTWD  330 (347)
T ss_dssp             SCCEEEEES
T ss_pred             ChHHheEeC
Confidence            54 777765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=1.6e-16  Score=142.58  Aligned_cols=236  Identities=13%  Similarity=0.136  Sum_probs=174.6

Q ss_pred             CceEEecceEeeccCcccCCCCCC-----------------------ccEEEEECCCCceeeeec--CCCCeeEEEECCC
Q 012996           37 HGLACVGQRFLASSQLREQPSASS-----------------------GSILYWSWSKPQVEVKSL--PAEPIKPIAANSH   91 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~-----------------------g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~   91 (451)
                      ..+..++  ++|+|+++++...+.                       +.|.+||..++.......  +...+..++++|+
T Consensus        24 ~~v~~va--~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           24 GQVSGVA--LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             SCEEEEE--ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             CCceEEE--ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            5567777  888888776655441                       379999998777654433  2357899999999


Q ss_pred             CcEEEEeccCCCEEEEEcCCCc-ceeee---------ccccCCeeEEEEcc-CCcEEEEee-CCCcEEEeeCcchhhhhh
Q 012996           92 GTYIAGGGQSGDIYMWEVASGR-LLKKW---------HAHYRAVTCLVFSE-DGSFLISGS-EDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~s~~-~dg~i~vwd~~~~~~~~~  159 (451)
                      |+++++...++.|++||..... .+..+         ..+......++++| ++.++++.+ .++.|++|+...      
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g------  175 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG------  175 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS------
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC------
Confidence            9988888888999999975432 45554         24455789999999 788888876 689999999532      


Q ss_pred             hhcccccceeccc----------CCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEE
Q 012996          160 SQRASHLYLHSFT----------GHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIA  225 (451)
Q Consensus       160 ~~~~~~~~~~~~~----------~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~  225 (451)
                            ..+..+.          ++.....+++++++ +  .++++...++.|++||..+++.+..+.   +...+.+++
T Consensus       176 ------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          176 ------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             ------CEEEEECEECCSSSCCTTEESCEEEEEEETTTT--EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             ------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCC--EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence                  1222221          22334789999987 5  788888889999999998898888775   445788999


Q ss_pred             ECCCCCEEEE-------EeCCCcEEEEEccCCCCCCCCCCceeeeee---ccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996          226 LDPAEHVFYA-------GSRDGSIYIAALNAESPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (451)
Q Consensus       226 ~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i  294 (451)
                      ++| +..+.+       ...+..|++|+..++.         .+..+   .++...+..|+++| +.++++...++.|++
T Consensus       248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~  317 (329)
T 3fvz_A          248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK  317 (329)
T ss_dssp             EET-TEEEEEECCCCTTCSCCCCEEEEETTTCC---------EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred             ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe---------EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence            999 333333       2344589999988763         33343   35677899999999 888888888999999


Q ss_pred             EeCC
Q 012996          295 WDPI  298 (451)
Q Consensus       295 wd~~  298 (451)
                      |++.
T Consensus       318 ~~~~  321 (329)
T 3fvz_A          318 FTLT  321 (329)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            9975

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=9.5e-17  Score=159.46  Aligned_cols=244  Identities=12%  Similarity=0.071  Sum_probs=172.7

Q ss_pred             CeeEEEECCCCcEEEEeccCC-----CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc-----------
Q 012996           82 PIKPIAANSHGTYIAGGGQSG-----DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC-----------  145 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-----------  145 (451)
                      .+..++|||||++||.+..++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.           
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            588999999999998765533     7999999999876543222 23678999999999999888766           


Q ss_pred             -----EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-----CCcEEEEEcCC------C
Q 012996          146 -----VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLK------G  209 (451)
Q Consensus       146 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-----d~~i~iwd~~~------~  209 (451)
                           |.+|++.+...       ....+.....|...+.++.|++++  ++|+.++.     +..|++||+.+      +
T Consensus       205 ~~~~~v~~~~l~t~~~-------~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQS-------EDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCCCEEEEEETTSCGG-------GCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             CCCCEEEEEECCCCcc-------cceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                 99999965211       111233334456667889999998  67766554     56899999976      4


Q ss_pred             c-eeeeee-cccceeEEEECCCCCEEEEEeCC----CcEEEEEccCCCCCCCCCCceeeeeeccCCc--ceeEEEEec-C
Q 012996          210 R-LLRNIV-FPSVIDAIALDPAEHVFYAGSRD----GSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST-G  280 (451)
Q Consensus       210 ~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~-~  280 (451)
                      . ....+. +...+.. .|+|+|+.|+..+..    +.|.+||+.+...       .....+..|..  .+..+.|++ +
T Consensus       276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVLVPEHEKDVLEWVACVRSN  347 (710)
T ss_dssp             SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCEEEEEEEETTT
T ss_pred             ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------ccceeccCCCCCCeEEEEEEEcCC
Confidence            3 233443 3333433 588888888776653    3699999876531       01223444433  688899997 7


Q ss_pred             CEEEEEcCCCc--EEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee----ccCCCCccccccCCCC
Q 012996          281 DLLISGSEDGM--VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL----GSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       281 ~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~----~s~d~~i~iw~~~~~~  343 (451)
                      .++++...|+.  |.+||+.+++.+..+..+.+.+..+.++|++..++.    ....+.+..|+..++.
T Consensus       348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          348 FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            78888888885  667787788888888888888999999999876652    2345678889887655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=3.6e-16  Score=138.18  Aligned_cols=232  Identities=12%  Similarity=0.005  Sum_probs=165.8

Q ss_pred             CCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           79 PAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      ......+++|+|+++ +++++..++.|..|+..++  ...+..+...+.+++++++|+++++...++.|.+||..++.. 
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-  102 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-  102 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-
Confidence            345678999999998 7788888999999998876  666667778899999999999887777778999999854211 


Q ss_pred             hhhhcccccceecccC-CcCceeEEEEeecCCeeEEEE----ee-------------CCCcEEEEEcCCCceeeeeeccc
Q 012996          158 CESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----AS-------------EDRTCKVWSLLKGRLLRNIVFPS  219 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s----~~-------------~d~~i~iwd~~~~~~~~~~~~~~  219 (451)
                             ......... ....+.++++++++  +++++    ++             ..+.|..++.. ++.........
T Consensus       103 -------~~~~~~~~~~~~~~~~~i~~d~~G--~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (296)
T 3e5z_A          103 -------ESIADSFEGKKLNSPNDVCLAPDG--SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV  172 (296)
T ss_dssp             -------EEEECEETTEECCCCCCEEECTTS--CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred             -------EEEeeccCCCCCCCCCCEEECCCC--CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence                   000011111 12346678898887  77776    33             13456666655 54433333556


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEccC-CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNA-ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      ....++|+|+++.+++.+.++.|++|++.. +...      .....+..+...+.++++++ |+++++.  ++.|.+||.
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence            678999999999997777889999999973 2100      00112233556678899999 8766665  888999997


Q ss_pred             CCCceEEEeecCCCCeeEEEEE-ecCceeeeccCCCC
Q 012996          298 ITHNIVRMFRLAKGPVNNILVV-RRPLYLNLGSFSNP  333 (451)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~s~d~~  333 (451)
                      . ++.+..+..+.. +++++|. |+++.|++++.++.
T Consensus       245 ~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          245 D-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             T-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEE
T ss_pred             C-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeE
Confidence            6 888888888777 9999994 89988888877643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.75  E-value=7.3e-15  Score=129.82  Aligned_cols=272  Identities=7%  Similarity=-0.022  Sum_probs=189.3

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  114 (451)
                      ..+.++.  +.++|...++...+ +.|.+||.. +......  .....+.+++++++|.++++...++.|..||.. ++.
T Consensus        15 ~~~~~i~--~d~~g~l~v~~~~~-~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~   89 (299)
T 2z2n_A           15 TGPYGIT--VSDKGKVWITQHKA-NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII   89 (299)
T ss_dssp             CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCccceE--ECCCCCEEEEecCC-CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence            4566777  88999877766555 899999988 5544332  235679999999999988887778889999975 432


Q ss_pred             e-eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996          115 L-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       115 ~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      . ..+......+.++++.+++.++++...++.|.+||. ++         .. .......+...+.++++.+++  .+++
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g---------~~-~~~~~~~~~~~~~~i~~~~~g--~l~v  156 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG---------KI-REYELPNKGSYPSFITLGSDN--ALWF  156 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC---------CE-EEEECSSTTCCEEEEEECTTS--CEEE
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC---------CE-EEecCCCCCCCCceEEEcCCC--CEEE
Confidence            2 112234567899999999988887777889999997 31         11 111122234567888888776  6777


Q ss_pred             EeeCCCcEEEEEcCCCceeee-ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996          194 SASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
                      +...++.|..||. +++.... .. ....+..+++++++.++++...++.|..||. ++.        ........+...
T Consensus       157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~  226 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--------ITEFKIPTPNAR  226 (299)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--------EEEEECSSTTCC
T ss_pred             EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--------EEEEECCCCCCC
Confidence            7667789999998 6655432 11 2346789999999987776667889999998 432        111123335567


Q ss_pred             eeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe--ecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       272 v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +.++++++ +.++++...++.|..||. +++ +..+  ..+...+.++++ +++.+.++.+ .+.+..++..
T Consensus       227 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          227 PHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred             ceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence            89999999 887777667889999998 454 3333  344567899999 8888777655 4555555544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=5.6e-17  Score=160.62  Aligned_cols=278  Identities=10%  Similarity=-0.021  Sum_probs=184.4

Q ss_pred             EeeccCcccCCCCCCc--cEEEE--ECCCCceeeeec-------CCCCeeEEEECCCCcEEEE-----eccCCCEEEEEc
Q 012996           46 FLASSQLREQPSASSG--SILYW--SWSKPQVEVKSL-------PAEPIKPIAANSHGTYIAG-----GGQSGDIYMWEV  109 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g--~i~vw--~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~-----~~~dg~i~iwd~  109 (451)
                      .+|+|++++....+.+  .-.+|  +...+.......       |...+..++|||||++||.     |+.+..|++||+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            4577887776654422  33444  443443322221       2336889999999999983     444568999999


Q ss_pred             CCCcceeeeccccCCe--eEEEEccCCcEEEEeeCCCc-------------EEEeeCcchhhhhhhhcccccceecccCC
Q 012996          110 ASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSEDGC-------------VRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus       110 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                      .+++.+.  ..+...+  ..++|+|||+.|+.++.|..             |++|++.+...       ....+.....|
T Consensus       155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-------~~~lv~~~~~~  225 (695)
T 2bkl_A          155 DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-------KDTVVHERTGD  225 (695)
T ss_dssp             TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-------GCEEEECCCCC
T ss_pred             CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-------hceEEEecCCC
Confidence            9988651  1122222  67999999999999988776             99999965311       11234444556


Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCC----cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC----CCcEEEEE
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR----DGSIYIAA  246 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d  246 (451)
                      ...+.++.|++++  ++|+.++.++    .|.+|+..++.......+...+....+ +++. ++..+.    ++.|.+||
T Consensus       226 ~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          226 PTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             TTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEB
T ss_pred             CEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEe
Confidence            6788899999998  6777666555    677777666654444444555566666 6666 555443    57899999


Q ss_pred             ccCCCCCCCCCCceeeeeeccC--CcceeEEEEecCCEEEEEcCCCcEEEEeCC-CCceEEEeecC-CCCeeEEEEEecC
Q 012996          247 LNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILVVRRP  322 (451)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~s~~~  322 (451)
                      +.+...       .....+..|  ...+..++|+.+.++++...|+..+||.+. ++..+..+..+ .+.+..+.++|++
T Consensus       302 ~~~~~~-------~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~  374 (695)
T 2bkl_A          302 PAKPAR-------ASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDL  374 (695)
T ss_dssp             TTBCSG-------GGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTC
T ss_pred             CCCCCc-------cCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCC
Confidence            876531       001222222  456788888767788888889988888654 46666777665 6678889999999


Q ss_pred             ceee----eccCCCCccccccCCCC
Q 012996          323 LYLN----LGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       323 ~~l~----~~s~d~~i~iw~~~~~~  343 (451)
                      ..++    +....+.+++|+..++.
T Consensus       375 ~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          375 DDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             SEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8776    44456789999987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=1.3e-15  Score=136.39  Aligned_cols=254  Identities=9%  Similarity=0.006  Sum_probs=179.9

Q ss_pred             ccEEEEECCCCceeeee-------cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC
Q 012996           61 GSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED  133 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  133 (451)
                      +.|.+||..+++.....       ........+.+. +++++++...++.|.+||..+++.+.++. .......++++++
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~   94 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSD   94 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEET
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCC
Confidence            89999999988765322       122446778774 45556666677899999999999988885 3467889999998


Q ss_pred             CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC-----cCceeEEEEeecCCeeEEEEee-CCCcEEEEEcC
Q 012996          134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-----TLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL  207 (451)
Q Consensus       134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~  207 (451)
                      ++.+++...++.|.+||..+..           ....+...     ......+++ .++  .++++.. .++.|.+||+.
T Consensus        95 g~lyv~~~~~~~v~~iD~~t~~-----------~~~~i~~g~~~~~~~~p~~i~~-~~~--~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           95 EKAYVTQIWDYRIFIINPKTYE-----------ITGYIECPDMDMESGSTEQMVQ-YGK--YVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             TEEEEEEBSCSEEEEEETTTTE-----------EEEEEECTTCCTTTCBCCCEEE-ETT--EEEEEECTTCCEEEEEETT
T ss_pred             CeEEEEECCCCeEEEEECCCCe-----------EEEEEEcCCccccCCCcceEEE-ECC--EEEEEcCCCCCEEEEEECC
Confidence            8655554478999999996532           22222211     124456666 333  4444443 48899999999


Q ss_pred             CCceeeeeecccceeEEEECCCCCEEEEEeCC----------CcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEE
Q 012996          208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD----------GSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLA  276 (451)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~  276 (451)
                      +++....+........++++|++++++++..+          +.|.++|..+.         +....+... ......++
T Consensus       161 t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la  231 (328)
T 3dsm_A          161 TDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQ  231 (328)
T ss_dssp             TTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEE
T ss_pred             CCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEE
Confidence            99988888766677889999999977776554          78999998875         333333221 24689999


Q ss_pred             Eec-CCEEEEEcCCCcEEEEeCCCCceEEE--eecCCCCeeEEEEEec-Cceeeec----cCCCCccccccCC
Q 012996          277 YST-GDLLISGSEDGMVRVWDPITHNIVRM--FRLAKGPVNNILVVRR-PLYLNLG----SFSNPHTSSRRHG  341 (451)
Q Consensus       277 ~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~-~~~l~~~----s~d~~i~iw~~~~  341 (451)
                      ++| ++.|+++..  .|.+||..+++....  +..+......++++|+ +..+++.    ..++.|.+|+..+
T Consensus       232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          232 LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence            999 888888765  899999998876422  2222356889999994 5555555    5788999999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=5.6e-16  Score=134.93  Aligned_cols=239  Identities=9%  Similarity=-0.047  Sum_probs=167.5

Q ss_pred             CeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      ...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||....      
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~------   97 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN------   97 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc------
Confidence            778999999999777 546788999999765543322233445678999999998666655 889999997441      


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCC
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD  239 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d  239 (451)
                           ............+.++++.+++  .++++...++.|.+|+..+........ ....+..++++|+++++++...+
T Consensus        98 -----~~~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  170 (270)
T 1rwi_B           98 -----NQTVLPFDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN  170 (270)
T ss_dssp             -----CCEECCCCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred             -----eEeeeecCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCC
Confidence                 1111111223567889998877  677777778899999866554332221 23467889999999877777778


Q ss_pred             CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996          240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV  318 (451)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (451)
                      +.|.+||.....         .......+...+.++++++ +.++++...++.|.+||............+...+.++++
T Consensus       171 ~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~  241 (270)
T 1rwi_B          171 NRVVKLEAESNN---------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV  241 (270)
T ss_dssp             TEEEEECTTTCC---------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred             CEEEEEecCCCc---------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence            899999987653         1111222336788999999 877777778899999998765443322233457899999


Q ss_pred             EecCceeeeccCCCCccccccCCCC
Q 012996          319 VRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       319 s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +++|+.+++...++.|.+++....+
T Consensus       242 ~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          242 DSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCcc
Confidence            9999988888899999999977544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=2.5e-15  Score=143.13  Aligned_cols=268  Identities=13%  Similarity=0.063  Sum_probs=191.3

Q ss_pred             cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEE
Q 012996           52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLV  129 (451)
Q Consensus        52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~  129 (451)
                      .++++..+++.|.++|..+++..........+..+.|+|||+++++++.++.|.+||+.  +++.+..+.... ....++
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia  246 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIE  246 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeE
Confidence            34444444499999999999887666666678899999999999999999999999995  777777776533 457899


Q ss_pred             Ec----cCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceeccc----------CCcC-ceeEEEEeecCCeeEEE
Q 012996          130 FS----EDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFT----------GHTL-RITDIVIGYGGVSATIV  193 (451)
Q Consensus       130 ~~----~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~i~~i~~~~~~~~~~l~  193 (451)
                      |+    |||++++++.. ++.|.++|..+..           .+..+.          .|.. .+..+..++++. .+++
T Consensus       247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-~~vv  314 (567)
T 1qks_A          247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIV  314 (567)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCC-----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEE
T ss_pred             EccccCCCCCEEEEEEccCCeEEEEECCCCc-----------EEEEEeccccccccccccCCCceEEEEEcCCCC-EEEE
Confidence            99    69998887765 5899999986532           222211          1222 567788777653 6677


Q ss_pred             EeeCCCcEEEEEcCCCcee--eeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeec----
Q 012996          194 SASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLS----  266 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----  266 (451)
                      ....+|.|.++|....+.+  ..+........+.|+|++++|+++. .++.|.++|+.+.+         .+..+.    
T Consensus       315 ~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---------l~~~i~vgg~  385 (567)
T 1qks_A          315 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---------LVAIEDTGGQ  385 (567)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEECSSS
T ss_pred             EecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc---------EEEEEeccCc
Confidence            7778899999999876433  2333455677889999999988765 57899999998763         222221    


Q ss_pred             -cCCcceeEEEEec-CC-EEEEEc-CCCcEEEEeCCC-------CceEEEeecCCCCeeEEEEEecCceeeeccC-----
Q 012996          267 -DHSKAVTCLAYST-GD-LLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF-----  330 (451)
Q Consensus       267 -~~~~~v~~~~~~~-~~-~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~-----  330 (451)
                       .|.+.-..+ ++| +. +++++. .++.|.++|..+       .+.++++......-..+.++|++++|.+...     
T Consensus       386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~  464 (567)
T 1qks_A          386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA  464 (567)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred             CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence             233222222 567 34 444443 468999999988       6788888865444355788999999877552     


Q ss_pred             --CCCccccccCCC
Q 012996          331 --SNPHTSSRRHGS  342 (451)
Q Consensus       331 --d~~i~iw~~~~~  342 (451)
                        .+.|.++|+...
T Consensus       465 ~~~~~v~v~d~~~~  478 (567)
T 1qks_A          465 EISGSVAVFDIKAM  478 (567)
T ss_dssp             HHHTCEEEEEGGGC
T ss_pred             ccCceEEEEECCcc
Confidence              458999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=4.9e-17  Score=149.98  Aligned_cols=236  Identities=8%  Similarity=-0.061  Sum_probs=156.9

Q ss_pred             eeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           83 IKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      +..++|+|||++|+.+...   ..|.+||+.+++.......+......+.|+|||+.|+.++.++.|.+||+.++.    
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~----  113 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE----  113 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC----
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC----
Confidence            7788999999998776443   368889998877554433333333347899999999999999999999986521    


Q ss_pred             hhcccccceecccCCcCceeE-------------------EEEeecCCeeEEEEe-----eCCCcEEEEEcCCCceeeee
Q 012996          160 SQRASHLYLHSFTGHTLRITD-------------------IVIGYGGVSATIVSA-----SEDRTCKVWSLLKGRLLRNI  215 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~-------------------i~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~  215 (451)
                             .......+......                   +.++|++  +.++..     ..+..|++||+.+++.....
T Consensus       114 -------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~  184 (396)
T 3c5m_A          114 -------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT--SWEKFAEFYHTNPTCRLIKVDIETGELEVIH  184 (396)
T ss_dssp             -------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC--SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred             -------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCC--cceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence                   11111112221111                   1234444  333322     45678999999988876666


Q ss_pred             ecccceeEEEECC-CCCEEEEEeCC------CcEEEEEccCCCCCCCCCCceeeeeeccC--CcceeEEEEec-CCEEEE
Q 012996          216 VFPSVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLIS  285 (451)
Q Consensus       216 ~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~l~s  285 (451)
                      .....+..+.|+| ++..|+..+.+      ..|++||+....          ...+..+  ...+..+.|+| +++|+.
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~  254 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGESCTHEFWIPDGSAMAY  254 (396)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred             cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCccccceEECCCCCEEEE
Confidence            6777889999999 78877666543      368888886543          1122222  33578899999 887777


Q ss_pred             EcCC-----CcEEEEeCCCCceEEEeecCCCCeeEEEEEe-cCceeeecc----------------CCCCccccccCCCC
Q 012996          286 GSED-----GMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGS----------------FSNPHTSSRRHGSQ  343 (451)
Q Consensus       286 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s----------------~d~~i~iw~~~~~~  343 (451)
                      ++.+     +.|.+||+.+++....... .+ .. +.|+| +|+++++++                .++.+.+|+..++.
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          255 VSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            6543     4499999988875443322 12 33 89999 999888754                34678899987655


Q ss_pred             C
Q 012996          344 L  344 (451)
Q Consensus       344 ~  344 (451)
                      .
T Consensus       332 ~  332 (396)
T 3c5m_A          332 A  332 (396)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=1.5e-15  Score=150.83  Aligned_cols=246  Identities=9%  Similarity=0.044  Sum_probs=166.5

Q ss_pred             ceEEecceEeeccCcccCCCCCCc----cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCC----------
Q 012996           38 GLACVGQRFLASSQLREQPSASSG----SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD----------  103 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g----~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------  103 (451)
                      .+....  |||+|++||.+..++|    .|++||+.+++..........+..++|+|||+.|+.++.++.          
T Consensus       126 ~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          126 ALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence            466667  9999999997655423    899999998886543333334778999999999999887765          


Q ss_pred             ------EEEEEcCCCcce--e--eeccccCCeeEEEEccCCcEEEEeeC-----CCcEEEeeCcchhhhhhhhcccccce
Q 012996          104 ------IYMWEVASGRLL--K--KWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYL  168 (451)
Q Consensus       104 ------i~iwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~  168 (451)
                            |++|++.++...  .  ....|...+..+.|+|||++|+.++.     +..|.+||+.+....    .......
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~~~~  279 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG----ITGILKW  279 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS----SCSSCCC
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc----cCCccce
Confidence                  999999887632  2  22335566789999999999887765     568999998430000    0011123


Q ss_pred             ecccCCcCceeEEEEeecCCeeEEEEeeC-C---CcEEEEEcCCCce--eeee-ecc--cceeEEEECCCCCEEEEEeCC
Q 012996          169 HSFTGHTLRITDIVIGYGGVSATIVSASE-D---RTCKVWSLLKGRL--LRNI-VFP--SVIDAIALDPAEHVFYAGSRD  239 (451)
Q Consensus       169 ~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d---~~i~iwd~~~~~~--~~~~-~~~--~~i~~~~~~~~~~~l~~~~~d  239 (451)
                      ..+..+...+.. .|++++  ..|+..+. +   +.|.+||+.++..  ...+ .+.  ..+..++|++++.++++...+
T Consensus       280 ~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          280 VKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             EEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             EEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            344455555544 477777  44444443 2   3699999987642  2233 332  368889998888888888888


Q ss_pred             Cc--EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-c---CCCcEEEEeCCCCc
Q 012996          240 GS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-S---EDGMVRVWDPITHN  301 (451)
Q Consensus       240 g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-~---~dg~i~iwd~~~~~  301 (451)
                      +.  |++|++.++         ..+..+..+...+..+.++| +..++.. +   ..++|..||+.+++
T Consensus       357 g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            85  556666443         23445666677888999998 6655533 2   35789999998877

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=1.1e-15  Score=151.30  Aligned_cols=239  Identities=8%  Similarity=-0.082  Sum_probs=162.1

Q ss_pred             CceEEecceEeeccCccc-----CCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCC-------
Q 012996           37 HGLACVGQRFLASSQLRE-----QPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGD-------  103 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~-----~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  103 (451)
                      ..+....  |||||++||     .++.+ ..|++||+.+++.. ...........++|+|||+.|+.++.+..       
T Consensus       121 ~~~~~~~--~SPDG~~la~~~~~~G~~~-~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          121 VSLGTWA--VSWDGKKVAFAQKPNAADE-AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEEE--ECTTSSEEEEEEEETTCSC-CEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             EEEEEEE--ECCCCCEEEEEECCCCCce-EEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            4566677  999999999     44444 79999999988764 22222222378999999999999888766       


Q ss_pred             ------EEEEEcCCCcc----eeeeccccCCeeEEEEccCCcEEEEeeCCC----cEEEeeCcchhhhhhhhccccccee
Q 012996          104 ------IYMWEVASGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLH  169 (451)
Q Consensus       104 ------i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~  169 (451)
                            |++|++.++..    +.....|...+..+.|+|||++|+.++.++    .|.+|+..+           . ...
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-----------~-~~~  265 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-----------K-DFR  265 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-----------S-SCE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-----------C-ceE
Confidence                  99999988762    333344556788999999999998877665    566665422           1 123


Q ss_pred             cccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCce---eeeeec--ccceeEEEECCCCCEEEEEeCCCc
Q 012996          170 SFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRL---LRNIVF--PSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~---~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                      .+..+...+....+ +++  .+++.+.   .++.|.+||+.++..   ...+.+  ...+..++++ ++.++++...|+.
T Consensus       266 ~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          266 LLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             EEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             EeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            33445555555555 565  5444443   257899999987653   233332  4457888887 6778888889998


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEec-CCEEEEE----cCCCcEEEEeCCCCce
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISG----SEDGMVRVWDPITHNI  302 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~s~----~~dg~i~iwd~~~~~~  302 (451)
                      .++|.+....        .....+..+ ...+..+.++| +..++..    ...++|++||+.+++.
T Consensus       342 ~~l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          342 SEVRVATLKG--------KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEETTC--------CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEEeCCC--------CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            8888665321        223334444 56778888888 7666632    3457899999988763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.72  E-value=3.8e-15  Score=129.41  Aligned_cols=247  Identities=14%  Similarity=0.061  Sum_probs=174.8

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeecCC--CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc-CCe
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAV  125 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v  125 (451)
                      .++.+++++.+ +.|.+||.++++........  ..+.++.++|+|+++++  .++.|..||. +++.+..+..+. ..+
T Consensus         4 ~~~~lv~~~~~-~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGW-NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTC-SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCC-CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            35677777777 99999999888887765543  37899999999998884  4677999998 899998887653 478


Q ss_pred             eEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEE
Q 012996          126 TCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVW  204 (451)
Q Consensus       126 ~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iw  204 (451)
                      .++.+.++|+++++.+. ++.|..+|... .......     .......+......+++.+++  +++++...++.|..|
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~-----~~~~~~~~~~~~~~v~~~~~G--~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTE-----FETGIERPHAQFRQINKNKKG--NYLVPLFATSEVREI  151 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEE-----ECCSCSSGGGSCSCCEECTTS--CEEEEETTTTEEEEE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEe-----ccCCCCcccccccCceECCCC--CEEEEecCCCEEEEE
Confidence            88999999999999887 77777777521 1100000     000001122234445566666  899999999999999


Q ss_pred             EcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC------CcceeEEEEe
Q 012996          205 SLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH------SKAVTCLAYS  278 (451)
Q Consensus       205 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~  278 (451)
                      |.. |+.+..+..+..+.++...++++.+++++.++.|..+|..+++         .+..+..+      ...+..+...
T Consensus       152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~---------~~w~~~~~~~~~~~l~~~~~~~~~  221 (276)
T 3no2_A          152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR---------IVRRVNANDIEGVQLFFVAQLFPL  221 (276)
T ss_dssp             CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC---------EEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred             CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc---------EEEEecCCCCCCccccccccceEc
Confidence            987 9999998877777888999999999999988899999988764         23333221      2346778888


Q ss_pred             c-CCEEEEEc--CC------CcEEEEeC-CCCceEEEeecCC--CCeeEEE
Q 012996          279 T-GDLLISGS--ED------GMVRVWDP-ITHNIVRMFRLAK--GPVNNIL  317 (451)
Q Consensus       279 ~-~~~l~s~~--~d------g~i~iwd~-~~~~~~~~~~~~~--~~v~~l~  317 (451)
                      + +.++++..  ..      +..+++++ .+++.+-++..+.  +.++.++
T Consensus       222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence            8 77777763  11      23345555 5778877776543  3455543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=5.3e-15  Score=130.63  Aligned_cols=232  Identities=12%  Similarity=0.120  Sum_probs=163.0

Q ss_pred             ceEEecceEeeccC-cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996           38 GLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (451)
Q Consensus        38 ~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  116 (451)
                      ....+.  |+|+|+ +++++..+ +.|..|+..++ ......+...+.+++++|+|+++++...++.|.+||..+++...
T Consensus        29 ~~eg~~--~d~~g~~l~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           29 WTEGPV--YVPARSAVIFSDVRQ-NRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             SEEEEE--EEGGGTEEEEEEGGG-TEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             cccCCe--EeCCCCEEEEEeCCC-CEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            345556  999998 55555555 89999999887 54445566789999999999988887777899999998887544


Q ss_pred             eeccc----cCCeeEEEEccCCcEEEE----eeC-------------CCcEEEeeCcchhhhhhhhcccccceecccCCc
Q 012996          117 KWHAH----YRAVTCLVFSEDGSFLIS----GSE-------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (451)
Q Consensus       117 ~~~~~----~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (451)
                      .....    ...+.+++++|+|+++++    |+.             .+.|..++..             .....+..+.
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-------------g~~~~~~~~~  171 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-------------GTLSAPIRDR  171 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-------------SCEEEEECCC
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-------------CCEEEeecCC
Confidence            33221    235678999999998887    331             2345555542             1122334455


Q ss_pred             CceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCce---eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRL---LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       176 ~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      ....+++|++++  +.+++.+.++.|.+|++. +++.   ...+. ....+..++++++|+++++.  ++.|.+||... 
T Consensus       172 ~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-  246 (296)
T 3e5z_A          172 VKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-  246 (296)
T ss_dssp             SSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-
T ss_pred             CCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-
Confidence            667899999988  667777888999999997 4544   22221 34456789999999866555  78999999863 


Q ss_pred             CCCCCCCCceeeeeeccCCcceeEEEEe-c-CCEEEEEcCCCcEEEEeCCCCce
Q 012996          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPITHNI  302 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~  302 (451)
                               ..+..+..+.. +++++|. | ++.|++++.++ +.-++..+.+.
T Consensus       247 ---------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          247 ---------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             ---------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             ---------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence                     33555666666 9999995 6 77888887764 55556665543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=4.2e-15  Score=129.38  Aligned_cols=239  Identities=8%  Similarity=-0.008  Sum_probs=165.1

Q ss_pred             ceEEecceEeeccCccc-CCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996           38 GLACVGQRFLASSQLRE-QPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~-~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  115 (451)
                      ....++  +.++|++.+ +...+ +.|.+|+..+....... .....+.+++++++|+++++.. ++.|.+||.......
T Consensus        25 ~p~~i~--~~~~g~l~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVA--VDSAGNVYVTSEGMY-GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEE--ECTTCCEEEEECSSS-CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceE--ECCCCCEEEEccCCC-CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            455666  889998666 43444 89999997665543322 2335788999999999776655 889999997655433


Q ss_pred             eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (451)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~  195 (451)
                      .........+.+++++++++++++...++.|.+|+..+           .............+.++++++++  +++++.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~p~~i~~~~~g--~l~v~~  167 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-----------KTQTVLPFTGLNDPDGVAVDNSG--NVYVTD  167 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-----------CSCEECCCCSCCSCCCEEECTTC--CEEEEE
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-----------ceeEeeccccCCCceeEEEeCCC--CEEEEE
Confidence            22222336789999999999877777788999997633           11111112233456788898877  677777


Q ss_pred             eCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996          196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (451)
Q Consensus       196 ~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  274 (451)
                      ..++.|.+||........... ....+..+++++++.++++...++.|.+|+......         ......+...+.+
T Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p~~  238 (270)
T 1rwi_B          168 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPLA  238 (270)
T ss_dssp             GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCEEE
T ss_pred             CCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCcee
Confidence            778899999987765443322 226688999999997777777788999999866421         1112223457899


Q ss_pred             EEEec-CCEEEEEcCCCcEEEEeCCCCce
Q 012996          275 LAYST-GDLLISGSEDGMVRVWDPITHNI  302 (451)
Q Consensus       275 ~~~~~-~~~l~s~~~dg~i~iwd~~~~~~  302 (451)
                      +++++ +.++++...++.|++++....+.
T Consensus       239 i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          239 VAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            99999 88888889999999999876543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=8.9e-15  Score=131.51  Aligned_cols=247  Identities=14%  Similarity=0.114  Sum_probs=167.2

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEEC
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAAN   89 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~   89 (451)
                      .++.++.|   .++....+..+.   ..+..++  |+++|++++++..+ +.|.+||..++...... .+...+.+++++
T Consensus        25 ~~~~~~~~---~~~~~~~~~~~~---~~~~~~~--~~~~g~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~   95 (333)
T 2dg1_A           25 SESELQTI---TAEPWLEISKKG---LQLEGLN--FDRQGQLFLLDVFE-GNIFKINPETKEIKRPFVSHKANPAAIKIH   95 (333)
T ss_dssp             CGGGSCEE---ECEEEEEEESSC---CCEEEEE--ECTTSCEEEEETTT-CEEEEECTTTCCEEEEEECSSSSEEEEEEC
T ss_pred             ecccCccc---ccceeEEEeccC---ccccCcE--ECCCCCEEEEECCC-CEEEEEeCCCCcEEEEeeCCCCCcceEEEC
Confidence            57788888   355555555433   3445666  99999976666666 89999999887765433 456789999999


Q ss_pred             CCCcEEEEeccC----CCEEEEEcCCCcceeeec--cccCCeeEEEEccCCcEEEEeeC------CCcEEEeeCcchhhh
Q 012996           90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEE  157 (451)
Q Consensus        90 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~  157 (451)
                      |+|+++++...+    +.|.+||..++.....+.  .+...+.+++++|+++++++...      .+.|..++..+    
T Consensus        96 ~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~----  171 (333)
T 2dg1_A           96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF----  171 (333)
T ss_dssp             TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS----
T ss_pred             CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC----
Confidence            999988876665    689999988776543332  24467899999999987776653      24566666532    


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCC-Cceeeee------ecc--cceeEEEEC
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK-GRLLRNI------VFP--SVIDAIALD  227 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~~------~~~--~~i~~~~~~  227 (451)
                             .. ...+..+...+.+++|++++  +.+ ++.+.++.|.+||+.+ +.....+      ...  ..+..++++
T Consensus       172 -------~~-~~~~~~~~~~~~~i~~~~dg--~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d  241 (333)
T 2dg1_A          172 -------RT-VTPIIQNISVANGIALSTDE--KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  241 (333)
T ss_dssp             -------CC-EEEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             -------CE-EEEeecCCCcccceEECCCC--CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence                   11 11122223456788999887  544 5555678999999964 3332211      111  367889999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC------cceeEEEEec-CCEEEEEcCCC
Q 012996          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------KAVTCLAYST-GDLLISGSEDG  290 (451)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~-~~~l~s~~~dg  290 (451)
                      ++++++++...++.|.+||....          .+..+..+.      ..+.+++|+| +..|+.++.++
T Consensus       242 ~~G~l~v~~~~~~~v~~~d~~g~----------~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          242 SDDNLYVAMYGQGRVLVFNKRGY----------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTCCEEEEEETTTEEEEECTTSC----------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCEEEEEcCCCEEEEECCCCC----------EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            99998887778899999998432          233333222      2689999998 77776666554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.70  E-value=1.2e-14  Score=129.88  Aligned_cols=280  Identities=10%  Similarity=0.017  Sum_probs=189.9

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec-C--
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P--   79 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~-~--   79 (451)
                      ++.|.+.|..+++.+.++.....+    . +.  ++|+|+++.++..         .++.|.+||..+.+...... .  
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P----~-va--~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g  130 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP----N-PV--VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA  130 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC----E-EE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC----c-EE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc
Confidence            679999999999999999865543    2 45  9999999988762         23789999999988654432 1  


Q ss_pred             -----CCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           80 -----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        80 -----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                           ......++|+|||+++.++..  ++.|.++|+.+++.+.++....  + ...+....+.+++.+.||.+.+.++.
T Consensus       131 ~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          131 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECC
Confidence                 235778999999999888764  6889999999999988885322  1 22333345667788889999999885


Q ss_pred             chhhhhhhhcccccceecccCCcCcee-EEEEe-ecCCeeEEEEeeCCCcEEEEEcCCCc--eeeeee-----------c
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIG-YGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------F  217 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-----------~  217 (451)
                      +...... . ..    ..+..-..++. ...|. +++  .+++ .+.+|.|++.|+.+..  ....+.           .
T Consensus       208 ~~g~v~~-~-~~----~~~~~~~~~~~~~~~~~~~dG--~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          208 TEGTPEI-T-HT----EVFHPEDEFLINHPAYSQKAG--RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             SSSCCEE-E-EC----CCCSCTTSCBCSCCEEETTTT--EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             CCCeEEE-e-ec----ceeccccccccccceeEcCCC--cEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence            4111000 0 00    01111111221 12443 344  4444 5558999999997654  333332           1


Q ss_pred             ccceeEEEECCCCCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEE
Q 012996          218 PSVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLIS  285 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s  285 (451)
                      +.....++++|+++.+++...          .+.|.++|+.+.+         .+..+.- ...+.+|++++ ++ +|++
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---------v~~~i~v-g~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFEM-GHEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEE-EEEECEEEECSSSSCEEEE
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---------EEEEEEC-CCCcceEEECCCCCeEEEE
Confidence            334556888999999888753          2579999998874         3444332 24788999999 65 5655


Q ss_pred             E-cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          286 G-SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       286 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      + ..++.|.++|..+++.++++... +.-..|.+++|
T Consensus       349 tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          349 LSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             EcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            4 56899999999999999999863 44556677766

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.69  E-value=6.3e-14  Score=124.76  Aligned_cols=245  Identities=9%  Similarity=0.064  Sum_probs=168.2

Q ss_pred             CCCeeEEEECCCCcEEEE-------eccCCCEEEEEcCCCcceeeec----cccCCeeEEEEccC-CcEEEEeeCCCcEE
Q 012996           80 AEPIKPIAANSHGTYIAG-------GGQSGDIYMWEVASGRLLKKWH----AHYRAVTCLVFSED-GSFLISGSEDGCVR  147 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~s~~~dg~i~  147 (451)
                      -....+++|++++.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++.. .+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            345689999999988887       6778899999988776543222    25567899999998 76555444 44788


Q ss_pred             EeeCcchhhhhhhhcccccc-eeccc-CCcCceeEEEEeecCCeeEEEEeeCC---------------CcEEEEEcCCCc
Q 012996          148 IWSLLTVFEECESQRASHLY-LHSFT-GHTLRITDIVIGYGGVSATIVSASED---------------RTCKVWSLLKGR  210 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~  210 (451)
                      +||.. +...        .. ..... .....+.++++.+++  +++++...+               +.|..||.. ++
T Consensus        96 ~~d~~-g~~~--------~~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~  163 (314)
T 1pjx_A           96 VVQTD-GTFE--------EIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEETT-SCEE--------ECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred             EEeCC-CCEE--------EEEeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence            99874 2100        00 00001 122457889998887  666666554               567778765 55


Q ss_pred             eeeeeecccceeEEEEC----CCCCEEEEE-eCCCcEEEEEccC-CCCCCCCCCceeeeeeccCC-cceeEEEEec-CCE
Q 012996          211 LLRNIVFPSVIDAIALD----PAEHVFYAG-SRDGSIYIAALNA-ESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDL  282 (451)
Q Consensus       211 ~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~  282 (451)
                      .............++++    |+++.++++ ..++.|.+||... +...    .......+..+. ..+..+++++ +.+
T Consensus       164 ~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~~~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----NKKVWGHIPGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE----EEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred             EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc----cceEEEECCCCCCCCCCceEECCCCCE
Confidence            44433344556889999    999776665 4678999999862 2100    001223334444 5678899999 888


Q ss_pred             EEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccccCC
Q 012996          283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHG  341 (451)
Q Consensus       283 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~~~~  341 (451)
                      +++...++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.+..|+...
T Consensus       240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8887788999999998888888887777889999999999855 5555667888887653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.69  E-value=2.4e-15  Score=150.00  Aligned_cols=279  Identities=13%  Similarity=0.007  Sum_probs=180.6

Q ss_pred             EeeccCcccCCCCCCc--cEEEEEC--C---CCceeeee-------cCCCCeeEEEECCCCcEEEEeccC-----CCEEE
Q 012996           46 FLASSQLREQPSASSG--SILYWSW--S---KPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQS-----GDIYM  106 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g--~i~vw~~--~---~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i  106 (451)
                      .+|+|++++....+.+  .-.+|..  .   .+......       .+...+..++|||||++||.+..+     ..|++
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            4588888876655433  3455543  3   33322211       122368899999999999877543     35999


Q ss_pred             EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc--------------EEEeeCcchhhhhhhhcccccceeccc
Q 012996          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC--------------VRIWSLLTVFEECESQRASHLYLHSFT  172 (451)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~  172 (451)
                      ||+.+++.+... .+...+..++|+|| +.|+.++.++.              |.+|++.+...       ....+....
T Consensus       194 ~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-------~~~lv~~~~  264 (741)
T 1yr2_A          194 VGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-------ADQPVFATP  264 (741)
T ss_dssp             EETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-------GCEEEECCT
T ss_pred             EECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-------hCEEEeccC
Confidence            999999875432 12222457899999 88888877654              88898855211       112233333


Q ss_pred             CCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCC--ceeeeee-cccceeEEEECCCCCEEEEEeCC----C
Q 012996          173 GHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRD----G  240 (451)
Q Consensus       173 ~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g  240 (451)
                      .+...+.++.|++++  ++|+..+.++     .|++||+.++  +....+. ......... +|+++.|+..+.+    +
T Consensus       265 ~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~  341 (741)
T 1yr2_A          265 ELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLK  341 (741)
T ss_dssp             TCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTC
T ss_pred             CCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCC
Confidence            444567889999998  6777666443     8999999876  3133333 333444443 4889888887764    4


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC-CCceEEEeecC-CCCeeEEEE
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILV  318 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~  318 (451)
                      .|++||+.+.. .      .....+..+...+..+.++.+.++++...|+..+||.+. ++.....+..+ .+.+..+.+
T Consensus       342 ~l~~~d~~~~~-~------~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~  414 (741)
T 1yr2_A          342 KIVRVDLSGST-P------RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG  414 (741)
T ss_dssp             EEEEEECSSSS-C------EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC
T ss_pred             EEEEEeCCCCc-c------ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec
Confidence            59999987631 0      122233445556667777756678888889987777554 46667777653 677899999


Q ss_pred             EecCceee----eccCCCCccccccCCCC
Q 012996          319 VRRPLYLN----LGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       319 s~~~~~l~----~~s~d~~i~iw~~~~~~  343 (451)
                      +|++..|+    +....+.+..|+..++.
T Consensus       415 s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          415 RPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            99998776    44455789999876543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.68  E-value=1.3e-13  Score=125.17  Aligned_cols=271  Identities=9%  Similarity=-0.106  Sum_probs=181.2

Q ss_pred             eeccCcccCCCC-CCc---cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCC
Q 012996           47 LASSQLREQPSA-SSG---SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASG  112 (451)
Q Consensus        47 ~~~~~~l~~~~~-d~g---~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~  112 (451)
                      .|+++++.+... ..+   .|.+||..+++........... .++++|||++++++.          .++.|.+||..+.
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            356665555543 213   8899999988876544433333 999999999998875          3577999999988


Q ss_pred             cceeeeccc-------cCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEE
Q 012996          113 RLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIV  182 (451)
Q Consensus       113 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~  182 (451)
                      +.+..+...       ......+.|+|||++|+++..  ++.|.++| .++.           .+.. +.. ..   ++.
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-----------~~~~~i~~-~~---~~~  171 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-----------SDDQLLSS-PT---CYH  171 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-----------EEeEEcCC-Cc---eEE
Confidence            877766422       123458999999999998874  47899999 7631           2222 221 11   234


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------cccc-eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                      +.+.+. ..+++.+.||.+.++|. +++......      ...+ .....+.+++..++..+..+.+.+.|+.....   
T Consensus       172 ~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~---  246 (373)
T 2mad_H          172 IHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA---  246 (373)
T ss_pred             EEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc---
Confidence            455554 46677888999999999 877663321      1111 12244566655555555788999999875431   


Q ss_pred             CCCceeeeeecc----------CCcceeEEEEec-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCCCCee
Q 012996          256 SYGMHIIGSLSD----------HSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPVN  314 (451)
Q Consensus       256 ~~~~~~~~~~~~----------~~~~v~~~~~~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~  314 (451)
                          ..+..+.-          .......+.++| ++.++++..          ++.|.++|..+++.+.++.. .....
T Consensus       247 ----~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~  321 (373)
T 2mad_H          247 ----TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVD  321 (373)
T ss_pred             ----eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcC
Confidence                11111110          112344477888 676666543          35799999999999999965 34689


Q ss_pred             EEEEEecCc-eeeecc-CCCCccccccCCCCC
Q 012996          315 NILVVRRPL-YLNLGS-FSNPHTSSRRHGSQL  344 (451)
Q Consensus       315 ~l~~s~~~~-~l~~~s-~d~~i~iw~~~~~~~  344 (451)
                      +++|+|||+ .++++. .++.+.++|..+.+.
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence            999999999 677776 589999999887554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.68  E-value=2.9e-14  Score=123.84  Aligned_cols=210  Identities=13%  Similarity=0.107  Sum_probs=163.2

Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeecccc-CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  169 (451)
                      .+++|++++.++.|.+||..+|+.+..+..+. ..+.++.++|+|+++++  .++.|..||. +           ...+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~-----------G~~~W   69 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-D-----------GRELW   69 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-T-----------SCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-C-----------CCEEE
Confidence            46889999999999999999999999998776 57899999999998883  4678999997 3           22333


Q ss_pred             cccCC-cCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCCCceeeeeecc-------cceeEEEECCCCCEEEEEeCCC
Q 012996          170 SFTGH-TLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIVFP-------SVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       170 ~~~~~-~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                      .+..+ ...+.++.+.+++  +++++.+. ++.|..+|. +++.+..+...       .....+++.++++++++...++
T Consensus        70 ~~~~~~~~~~~~~~~~~dG--~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           70 NIAAPAGCEMQTARILPDG--NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEECCTTCEEEEEEECTTS--CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EEcCCCCccccccEECCCC--CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence            44433 3467788888887  78888877 788888885 78877776522       2345667899999999999999


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC------CCe
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK------GPV  313 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v  313 (451)
                      .|..||.. ++         .+..+..+ ..+.++...+ ++++++++.++.|..+|..+|+.+.++..+.      ..+
T Consensus       147 ~v~~~d~~-G~---------~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~  215 (276)
T 3no2_A          147 EVREIAPN-GQ---------LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV  215 (276)
T ss_dssp             EEEEECTT-SC---------EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred             EEEEECCC-CC---------EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence            99999987 53         34444433 3456677778 8999998888899999999999999987542      237


Q ss_pred             eEEEEEecCceeeec
Q 012996          314 NNILVVRRPLYLNLG  328 (451)
Q Consensus       314 ~~l~~s~~~~~l~~~  328 (451)
                      ..++..++|..+++.
T Consensus       216 ~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          216 AQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             ccceEcCCCCEEEEe
Confidence            888889999888876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.68  E-value=4.8e-13  Score=121.32  Aligned_cols=262  Identities=8%  Similarity=-0.098  Sum_probs=175.3

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeecC-----
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLP-----   79 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~~-----   79 (451)
                      +|.++|..+++.+.++.....+  .   +.  ++|+|+++.++..         .++.|.+||..+.+.......     
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~---i~--~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--N---PV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--C---eE--ECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence            8899999999998887654322  3   33  9999999988852         237899999987665433211     


Q ss_pred             ---CCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceee-eccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCc
Q 012996           80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        80 ---~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~  152 (451)
                         ......++|+|||++|+++..  ++.|.++| .+++.+.. +... +   ++.+.|++ +.+++.+.||.+.++|. 
T Consensus       121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-  194 (373)
T 2mad_H          121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-  194 (373)
T ss_pred             cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence               134568999999999998864  47899999 99988877 5432 1   24455544 45667778999999998 


Q ss_pred             chhhhhhhhcccccceecccCCcCc-eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc--eeeeee-----------cc
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLR-ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------FP  218 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-----------~~  218 (451)
                      ++......   ...  ..+ ....+ .....+.+++. .++++ +..+.+.+.|+....  .+..+.           .+
T Consensus       195 ~g~~~~~~---~~~--~~~-~~~~p~~~~~~~~~~~~-~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p  266 (373)
T 2mad_H          195 AGGAAGAG---LVG--AML-TAAQNLLTQPAQANKSG-RIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRP  266 (373)
T ss_pred             CCcEEEEE---ecc--ccc-cCCcceeecceeEecCC-EEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence            53221000   000  001 11111 12234555552 33333 367899999987542  222222           12


Q ss_pred             cceeEEEECCCCCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEE
Q 012996          219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG  286 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~  286 (451)
                      .....+.++|+++.++++..          .+.|.++|..+.         +.+.++. ......+++|+| ++ .++++
T Consensus       267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQIS-LGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEE-CCCCcCeEEECCCCCeEEEEE
Confidence            33455889999999888754          357999999876         4445553 234689999999 88 77777


Q ss_pred             c-CCCcEEEEeCCCCceEEEe
Q 012996          287 S-EDGMVRVWDPITHNIVRMF  306 (451)
Q Consensus       287 ~-~dg~i~iwd~~~~~~~~~~  306 (451)
                      . .++.|.+||+.+++.+.++
T Consensus       337 ~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          337 SAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             cCCCCeEEEEECCCCCEEeee
Confidence            7 5899999999999999884

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.67  E-value=4.1e-13  Score=118.58  Aligned_cols=263  Identities=7%  Similarity=-0.002  Sum_probs=182.2

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  114 (451)
                      .....+.  +.++|...++...+ +.|.+|+.. +.......  ....+.++++.+++++.++...++.|..||.. ++.
T Consensus        20 ~~p~~i~--~d~~g~l~v~~~~~-~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           20 SGPYGIT--SSEDGKVWFTQHKA-NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCcceee--ECCCCCEEEEcCCC-CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            4556666  88888877766555 899999988 55443222  23678999999999988877767889999977 554


Q ss_pred             ee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996          115 LK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       115 ~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      .. ........+.++++.++++++++...++.|..||...           ......+......+.++++.+++  ++++
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~d~~g--~l~v  161 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG-----------TIYEYDLPNKGSYPAFITLGSDN--ALWF  161 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-----------CEEEEECSSTTCCEEEEEECTTS--SEEE
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC-----------CEEEccCCCCCCCceeEEECCCC--CEEE
Confidence            32 2222346789999999998888777688899998741           11111122234567888888877  6666


Q ss_pred             EeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                      +...++.|..||. +++... +.   ....+..+++++++.++++....+.|..|+.. +.        ........+..
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~  230 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE--------ISEYDIPTPNA  230 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC--------EEEEECSSTTC
T ss_pred             EecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc--------EEEEECCCCCC
Confidence            6666788999998 555443 32   23468899999999877766667789999983 22        11112233456


Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE-EeecCCCCeeEEEEEecCceeeecc
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      .+.++++++ +.+.++...++.|..||. +++... .+......+.+++++++|...++..
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence            788999999 887777767789999998 454332 2333345789999999998666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=5.1e-13  Score=117.90  Aligned_cols=236  Identities=9%  Similarity=0.018  Sum_probs=169.3

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      ...+.+++++++|+++++...++.|.+||.. +..... ...+...+.++++++++.++++...++.|..||...     
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----   87 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-----   87 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-----
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-----
Confidence            3578999999999988876667899999987 544322 223456789999999999888777788899999732     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEE
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~  236 (451)
                            ......+......+.++++.+++  .++++...++.|..||. +++......  ....+..+++++++.++++.
T Consensus        88 ------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A           88 ------IIKEYTLPNPDSAPYGITEGPNG--DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             ------CEEEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred             ------cEEEEeCCCcCCCceeeEECCCC--CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence                  11111122244567888888776  67777777889999998 554432221  23568899999999887777


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE-eecCCCCee
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVN  314 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~  314 (451)
                      ..++.|..||. ++.        ........+...+.++++++ +.++++...++.|.+||. +++.... ...+...+.
T Consensus       159 ~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~  228 (299)
T 2z2n_A          159 NQNNAIGRITE-SGD--------ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPH  228 (299)
T ss_dssp             TTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             CCCCEEEEEcC-CCc--------EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCce
Confidence            77789999998 432        11111233455688999999 887777777889999998 6664332 233456789


Q ss_pred             EEEEEecCceeeeccCCCCccccccC
Q 012996          315 NILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       315 ~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +++++++|..+++...++.+..|+..
T Consensus       229 ~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          229 AITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             eEEECCCCCEEEeccCCceEEEECCC
Confidence            99999999877776677888888874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=4.6e-14  Score=126.17  Aligned_cols=274  Identities=10%  Similarity=0.008  Sum_probs=183.6

Q ss_pred             EeeccCcccCCCCC----CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCC
Q 012996           46 FLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS  111 (451)
Q Consensus        46 ~~~~~~~l~~~~~d----~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~  111 (451)
                      ..|+++.+.++...    ++.|.+.|..+.+............ ++++|||+++++++          .++.|.+||..+
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            45777777666542    3899999999988765544333334 99999999887765          356899999999


Q ss_pred             Ccceeeeccc-------cCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          112 GRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       112 ~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      ++.+..+...       ......+.|+|||++++++..  ++.|.++|+.+           ...+..+....  . ...
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-----------~~vv~tI~v~g--~-~~~  184 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-----------KAFKRMLDVPD--C-YHI  184 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-----------TEEEEEEECCS--E-EEE
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-----------CcEEEEEECCC--c-cee
Confidence            9988877432       124567999999999988864  68999999965           33334332211  1 122


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-c----ccce-eEEEE-CCCCCEEEEEeCCCcEEEEEccCCCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-F----PSVI-DAIAL-DPAEHVFYAGSRDGSIYIAALNAESPST  254 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~----~~~i-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~  254 (451)
                      + |.+. ..+++.+.||.+.+.++.+ ++...... .    ...+ ....| .++|++++ .+.+|.+++.|+.+...  
T Consensus       185 ~-P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~--  259 (386)
T 3sjl_D          185 F-PTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA--  259 (386)
T ss_dssp             E-EEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC--
T ss_pred             e-cCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc--
Confidence            2 3332 5677888899999999976 55432111 1    1112 12355 36776665 45589999999976542  


Q ss_pred             CCCCceeeeeec---------c-CCcceeEEEEec-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCCCCe
Q 012996          255 SSYGMHIIGSLS---------D-HSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPV  313 (451)
Q Consensus       255 ~~~~~~~~~~~~---------~-~~~~v~~~~~~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v  313 (451)
                           .....+.         + .......+++++ ++.++....          .+.|.+.|+.+++.++++... .++
T Consensus       260 -----~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~  333 (386)
T 3sjl_D          260 -----KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEI  333 (386)
T ss_dssp             -----EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEE
T ss_pred             -----eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCc
Confidence                 1111111         0 122334577788 666666532          257999999999999998863 478


Q ss_pred             eEEEEEecCc-eeee-ccCCCCccccccCCCCCC
Q 012996          314 NNILVVRRPL-YLNL-GSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       314 ~~l~~s~~~~-~l~~-~s~d~~i~iw~~~~~~~~  345 (451)
                      ..|++++|++ +|++ ...++.+.++|..+.+..
T Consensus       334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             CEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            8999999997 5555 456899999998876543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=1.3e-12  Score=115.13  Aligned_cols=231  Identities=10%  Similarity=0.101  Sum_probs=155.0

Q ss_pred             CCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           81 EPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        81 ~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      .-..+..|+|+ +.++++...++.|+.||..++.. ..+ .....+.+++++++++++++ . ++.|.+||..++.    
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~----   84 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS----   84 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE----
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc----
Confidence            34568889985 55666767788999999887764 233 24567999999999995554 4 5679999985421    


Q ss_pred             hhcccccceeccc--CCcCceeEEEEeecCCeeEEEEeeCC---------CcEEEEEcCC-CceeeeeecccceeEEEEC
Q 012996          160 SQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLK-GRLLRNIVFPSVIDAIALD  227 (451)
Q Consensus       160 ~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~~d---------~~i~iwd~~~-~~~~~~~~~~~~i~~~~~~  227 (451)
                           ...+....  .....+.++++++++  +++++....         ..-.+|.+.. ++...........+.++|+
T Consensus        85 -----~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~s  157 (297)
T 3g4e_A           85 -----AVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWS  157 (297)
T ss_dssp             -----EEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEEC
T ss_pred             -----EEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEc
Confidence                 11111111  123457889998887  655544221         2234444432 4433333344557889999


Q ss_pred             CCCCEEEEE-eCCCcEEEEEcc--CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          228 PAEHVFYAG-SRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       228 ~~~~~l~~~-~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      |+++.|+++ +.++.|..|++.  ++..    ...+....+..+...+..+++++ |++.++...++.|..||..+++.+
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~----~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQI----SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCE----EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcc----cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            999877654 557889999984  2211    00122333334456788999999 887777777888999999999999


Q ss_pred             EEeecCCCCeeEEEEE-ecCceeeeccC
Q 012996          304 RMFRLAKGPVNNILVV-RRPLYLNLGSF  330 (451)
Q Consensus       304 ~~~~~~~~~v~~l~~s-~~~~~l~~~s~  330 (451)
                      ..+..+...+++++|. |+++.|..++.
T Consensus       234 ~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          234 QTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            9999887889999999 88887755543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.61  E-value=3.2e-13  Score=123.04  Aligned_cols=264  Identities=10%  Similarity=-0.009  Sum_probs=178.1

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec-C---
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P---   79 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~-~---   79 (451)
                      +.|.+.|+.+++.+.++.....+  .+   .  ++|+|+++.++..         .++.|.++|..+.+...... .   
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gi---a--~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HP---V--AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EE---E--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ce---E--ECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence            79999999999999999865533  44   4  9999999988863         23799999999887654432 1   


Q ss_pred             ----CCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCc
Q 012996           80 ----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        80 ----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  152 (451)
                          ......+.|+|||++++++..  ++.|.+.|+.+++.+..+....    +....|+ ...+++.+.||.+.+.+..
T Consensus       172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECC
Confidence                235678999999999998764  5789999999999888876422    1223332 2556666677777777773


Q ss_pred             chhhhhhhhcccccceecccCCcCce-eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeee-----------cc
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-----------FP  218 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-----------~~  218 (451)
                      ++.....   ..    ..+.....++ ..+.+.+++  ..++..+..+.+.+.|.......  ..+.           .+
T Consensus       248 ~~~v~~~---~~----~~~~v~~~p~~~~~~~~~dg--~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          248 DGETKVT---NT----EVFHTEDELLINHPAFSLRS--GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             TTCCEEE---EC----CCCSCTTSCBCSCCEECTTT--CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CCcEEEE---ee----eeeccCCCceeeEeeecCCC--CEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            2111000   00    0111111111 123456666  45555566789999998655421  1111           12


Q ss_pred             cceeEEEECCCCCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEE
Q 012996          219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG  286 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~  286 (451)
                      .....++++|+++.+++...          ++.|.++|..+.+         .+.++.. ......+.|+| ++ ++++.
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~v-g~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIEL-GHEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEEC-CCCcCeEEEccCCCEEEEEE
Confidence            22334789999998888753          3579999998863         3444432 23588999999 87 77777


Q ss_pred             c-CCCcEEEEeCCCCceEEEe
Q 012996          287 S-EDGMVRVWDPITHNIVRMF  306 (451)
Q Consensus       287 ~-~dg~i~iwd~~~~~~~~~~  306 (451)
                      . .++.|.++|+.+++.++++
T Consensus       389 n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          389 SAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEe
Confidence            7 5999999999999999997

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.61  E-value=7.6e-14  Score=127.13  Aligned_cols=278  Identities=11%  Similarity=-0.009  Sum_probs=184.6

Q ss_pred             eccCcccCCCCCC----ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCCc
Q 012996           48 ASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGR  113 (451)
Q Consensus        48 ~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~  113 (451)
                      ++++.+.++...+    +.|.++|..+.+......-.... .+.++|||++++++.          .++.|.++|..+++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            3444444443332    69999999998887655433334 899999999888875          36789999999999


Q ss_pred             ceeeeccc-------cCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          114 LLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       114 ~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      .+..+.-.       ......+.|+|||++++++..  ++.|.+.|+.+           ...+..+....    +....
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-----------~kvv~~I~v~g----~~~~~  225 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-----------KTFDRMLDVPD----CYHIF  225 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-----------TEEEEEEECCS----EEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-----------CeEEEEEEcCC----ceeec
Confidence            88776422       234567899999999998874  57899999965           22333333211    12334


Q ss_pred             ecCCeeEEEEeeCCCcEEEEEcCCCceeee----eec-ccc-eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVF-PSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (451)
Q Consensus       185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~-~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (451)
                      |.+. ..+++.+.||.+.+.+..+++....    +.. ..+ ...+.+.+++..++..+..+.+++.|.......... .
T Consensus       226 p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~-~  303 (426)
T 3c75_H          226 PASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA-P  303 (426)
T ss_dssp             EEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC-C
T ss_pred             cCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee-e
Confidence            4443 5667777899999888866655422    111 111 123567888888888888899999998654311000 0


Q ss_pred             ceeee--e--eccCCcceeEEEEec-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc
Q 012996          259 MHIIG--S--LSDHSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL  323 (451)
Q Consensus       259 ~~~~~--~--~~~~~~~v~~~~~~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~  323 (451)
                      +....  .  ..........++++| ++.+++...          ++.|.++|..+.+.+.++... ....++.|+|||+
T Consensus       304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~  382 (426)
T 3c75_H          304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAE  382 (426)
T ss_dssp             EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS
T ss_pred             eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCC
Confidence            00000  0  000011222368899 676665532          357999999999999999753 3588999999999


Q ss_pred             -eeeecc-CCCCccccccCCCCC
Q 012996          324 -YLNLGS-FSNPHTSSRRHGSQL  344 (451)
Q Consensus       324 -~l~~~s-~d~~i~iw~~~~~~~  344 (451)
                       +++++. .++.|.++|..+.+.
T Consensus       383 ~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          383 PLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             CEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEEcCCCCeEEEEECCCCCE
Confidence             787777 589999999887654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.60  E-value=2.5e-12  Score=117.60  Aligned_cols=308  Identities=9%  Similarity=0.034  Sum_probs=187.9

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCC------CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~   77 (451)
                      .|++++ .++.|..+|..+|+.+..+......      ...+...   ...++..+.+++.+ +.|..+|..+++.....
T Consensus        55 ~v~~~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~~~~-g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           55 VVYAAD-RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG---VTVSGGHVYIGSEK-AQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE---EEEETTEEEEEETT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-CCCeEEEEEccCCceeeeecCccccccccccCcccccC---ceEeCCEEEEEcCC-CEEEEEECCCCCEEEEE
Confidence            355566 6889999999999998777653211      1222222   23345566666666 89999999988877655


Q ss_pred             cCCCCeeE-EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe-----eEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996           78 LPAEPIKP-IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-----TCLVFSEDGSFLISGSEDGCVRIWSL  151 (451)
Q Consensus        78 ~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~dg~i~vwd~  151 (451)
                      .....+.+ ....  +..+++++.++.|..+|..+|+.+..+.......     ......  +..++.++.++.+..+|.
T Consensus       130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred             eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence            43332221 1222  4467778889999999999999887765432211     122222  446788888999999998


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (451)
                      .++................+.. -..+.......+   ..++.++.++.+..+|..+++.+....... ...+..  ++.
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~-~~~~~~~p~~~~---~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~  278 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDR-LSDVDTTPVVVN---GVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGN  278 (376)
T ss_dssp             TTCCEEEEEECCC------------CCCCCCEEET---TEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETT
T ss_pred             CCCcEEEEEecccCCCCccccc-ccccCCCcEEEC---CEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECC
Confidence            6642211100000000000000 000100001112   467778889999999999999887665333 333333  467


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  310 (451)
                      .+++++.++.++.+|..++..         ..... .....+...... +..|+.++.+|.|.++|..+++.+..+....
T Consensus       279 ~l~~~~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~  348 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDGGVT---------LWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQKVDS  348 (376)
T ss_dssp             EEEEEETTCCEEEEETTTCCE---------EEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCT
T ss_pred             EEEEEcCCCeEEEEECCCCcE---------EEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence            888889999999999988752         22222 111222222222 6788899999999999999999988877644


Q ss_pred             CCeeEEEEEecCceeeeccCCCCccccc
Q 012996          311 GPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       311 ~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ..+....... +..|+.++.+|.+..|+
T Consensus       349 ~~~~~~~~~~-~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          349 SGFQTEPVAA-DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred             CcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence            4443322223 45677788899888775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.59  E-value=6e-13  Score=122.47  Aligned_cols=234  Identities=9%  Similarity=0.047  Sum_probs=159.4

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC  158 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~  158 (451)
                      .....|+|+++++++++...++.|++||..++........ ..... ++|+++++.|+++..++  .|.+|+......  
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence            4678999999999888877788999999987766555443 23334 99999999998888766  688887743110  


Q ss_pred             hhhcccccceecc-cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee----eecc-cce-e-EEEECCC-
Q 012996          159 ESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVFP-SVI-D-AIALDPA-  229 (451)
Q Consensus       159 ~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~-~~i-~-~~~~~~~-  229 (451)
                            ...+..+ ......+.+++++++.  ..|+.+..++.|+.||..++.....    .... ..- . .++|+|+ 
T Consensus       207 ------~~~~g~~~~~~~~~p~~iav~p~~--g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          207 ------PTRIGQLGSTFSGKIGAVALDETE--EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             ------EEEEEECCTTSCSCCCBCEECTTS--SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred             ------eEEeeeccchhcCCcEEEEEeCCC--CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence                  0011111 1134566788998843  3455577788999999987653322    1111 111 3 8999995 


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC---------------CcceeEEEEec-CCEEEEEc-CCCcE
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGS-EDGMV  292 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~-~~~l~s~~-~dg~i  292 (451)
                      +.++++...++.|+.|+.....           ..+.++               -.....+++++ +.++++-+ .++.|
T Consensus       279 g~lyv~d~~~~~I~~~~~~g~~-----------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I  347 (409)
T 3hrp_A          279 SNFYMSDQNLSSVYKITPDGEC-----------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL  347 (409)
T ss_dssp             TEEEEEETTTTEEEEECTTCCE-----------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred             CEEEEEeCCCCEEEEEecCCCE-----------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence            5555555667889999876531           111111               24578999999 88888877 88999


Q ss_pred             EEEeCCCCceEEEeecC---------------CCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          293 RVWDPITHNIVRMFRLA---------------KGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       293 ~iwd~~~~~~~~~~~~~---------------~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      +.|++.++.. .++.++               ......++++++|.++++-..++.|+.++
T Consensus       348 ~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          348 RKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             EEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             EEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            9999877764 444443               23578999999988888877777776554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.58  E-value=3.5e-13  Score=134.45  Aligned_cols=240  Identities=12%  Similarity=0.071  Sum_probs=156.4

Q ss_pred             ceEEecceEeeccCcccCCCCCCc----cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCC----------
Q 012996           38 GLACVGQRFLASSQLREQPSASSG----SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD----------  103 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g----~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------  103 (451)
                      .+....  |||||++||.+..++|    .|++||+.+++......+...+..++|+|| +.|+.++.++.          
T Consensus       164 ~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~  240 (741)
T 1yr2_A          164 ALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN  240 (741)
T ss_dssp             EEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred             EEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence            456666  9999999998765433    599999998886543323223468899999 98888776554          


Q ss_pred             ----EEEEEcCCCcc--eeee--ccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceec
Q 012996          104 ----IYMWEVASGRL--LKKW--HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus       104 ----i~iwd~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                          |++|++.++..  ...+  ..+...+..+.|+|||++|+..+.++     .|.+||+.++         .......
T Consensus       241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~---------~~~~~~~  311 (741)
T 1yr2_A          241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG---------KIGPVTA  311 (741)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT---------EECCCEE
T ss_pred             CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC---------CCcccEE
Confidence                89999877653  2222  23334588999999999988777544     7999998541         0010223


Q ss_pred             ccCCcCceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCC--ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEE
Q 012996          171 FTGHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY  243 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~  243 (451)
                      +..+...+.... ++++  ..|+..+.    ++.|.+||+.++  .....+. +...+..++++ ++.++++...++..+
T Consensus       312 l~~~~~~~~~~~-~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          312 LIPDLKAQWDFV-DGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             EECSSSSCEEEE-EEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             ecCCCCceEEEE-eccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            334444444443 4666  55655554    345999999875  2333333 33456677776 666778888888877


Q ss_pred             EEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEE-EE---cCCCcEEEEeCCCCc
Q 012996          244 IAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLI-SG---SEDGMVRVWDPITHN  301 (451)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~-s~---~~dg~i~iwd~~~~~  301 (451)
                      +|.+....        .....+.. +...+..+.++| +..|+ +.   ...++|.+||+.+++
T Consensus       388 l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDG--------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTS--------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCC--------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            77654211        22333433 356788899999 66555 32   345789999998876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.1e-12  Score=116.73  Aligned_cols=232  Identities=9%  Similarity=0.056  Sum_probs=155.9

Q ss_pred             eEEecceEeeccCcccC-------CCCCCccEEEEECCCCceeeeec-----CCCCeeEEEECCC-CcEEEEeccCCCEE
Q 012996           39 LACVGQRFLASSQLREQ-------PSASSGSILYWSWSKPQVEVKSL-----PAEPIKPIAANSH-GTYIAGGGQSGDIY  105 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~-------~~~d~g~i~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~l~~~~~dg~i~  105 (451)
                      ...++  |.+++.++++       ...+ +.|.+|+..+++......     +...+.+++++++ |+++++.. .+.|.
T Consensus        20 ~~~~~--~~~~g~l~~~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           20 AEGPV--FDKNGDFYIVAPEVEVNGKPA-GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CEEEE--ECTTSCEEEEETTCEETTEEC-CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             ccCce--ECCCCCEEEEEeccccCCCCC-CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            34555  8888887776       4555 899999987776643332     3467899999999 77666544 34799


Q ss_pred             EEEcCCCcceee-ecc----ccCCeeEEEEccCCcEEEEeeCC---------------CcEEEeeCcchhhhhhhhcccc
Q 012996          106 MWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSED---------------GCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus       106 iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~s~~~d---------------g~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      +||.. ++.... ...    ....+.+++++++|+++++...+               +.|..|+..            .
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------g  162 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD------------G  162 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT------------S
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC------------C
Confidence            99987 665433 211    12458899999999887776655               456666652            1


Q ss_pred             cceecccCCcCceeEEEEe----ecCCeeEEEEe-eCCCcEEEEEcC-CCce-----eeeee-cc-cceeEEEECCCCCE
Q 012996          166 LYLHSFTGHTLRITDIVIG----YGGVSATIVSA-SEDRTCKVWSLL-KGRL-----LRNIV-FP-SVIDAIALDPAEHV  232 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~----~~~~~~~l~s~-~~d~~i~iwd~~-~~~~-----~~~~~-~~-~~i~~~~~~~~~~~  232 (451)
                      .. ..+..+......++++    +++  +.++.+ ..++.|.+||+. +++.     ...+. +. ..+..++++++|.+
T Consensus       163 ~~-~~~~~~~~~~~~i~~~~~~d~dg--~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          163 QM-IQVDTAFQFPNGIAVRHMNDGRP--YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             CE-EEEEEEESSEEEEEEEECTTSCE--EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred             CE-EEeccCCCCcceEEEecccCCCC--CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence            11 1112233445788888    765  555444 567899999986 4432     11221 11 56788999999988


Q ss_pred             EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCC
Q 012996          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~  299 (451)
                      +++...++.|.+||..++.         .+..+..+...+.++++++ ++ ++++...++.|..|++..
T Consensus       240 ~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8887788999999987442         2233445557899999999 87 445556678899999764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.57  E-value=3.9e-12  Score=124.84  Aligned_cols=308  Identities=13%  Similarity=0.084  Sum_probs=188.6

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCC------ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH------GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~   77 (451)
                      .|++++ .++.|..+|..+|+.+.++........      ......  ....+..+++++.+ +.|..+|..+++.....
T Consensus        72 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~v~~~d-g~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           72 VMYTTG-PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRG--VAVWKGKVYVGVLD-GRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             EEEEEC-GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCc--cEEECCEEEEEccC-CEEEEEECCCCCEeeee
Confidence            355566 688999999999999988764322100      000011  22345566677666 99999999999887654


Q ss_pred             cCC---CCeeEEEECC---CCcEEEEec------cCCCEEEEEcCCCcceeeeccc------------------------
Q 012996           78 LPA---EPIKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKWHAH------------------------  121 (451)
Q Consensus        78 ~~~---~~v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~------------------------  121 (451)
                      ...   .....+..+|   ++. +++++      .+|.|+.||..+|+.+..+...                        
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            332   1111222233   444 44443      3689999999999988766421                        


Q ss_pred             -------cCCeeEEEEccCCcEEEEeeCCCc-------------------EEEeeCcchhhhhhhhcccccceecccCCc
Q 012996          122 -------YRAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (451)
Q Consensus       122 -------~~~v~~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (451)
                             ......+.++|+...++.++.++.                   |..+|..++........... ....+. ..
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~-d~wd~~-~~  304 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG-DAWDYT-AT  304 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT-CCSCCC-CC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc-cccccc-CC
Confidence                   011125788888888888887764                   88999876432211100000 000000 11


Q ss_pred             CceeEEEEeecCC-eeEEEEeeCCCcEEEEEcCCCceeeeeeccc-----------------------------------
Q 012996          176 LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS-----------------------------------  219 (451)
Q Consensus       176 ~~i~~i~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------------------  219 (451)
                      ....-.....++. ...++.++.+|.++++|..+|+.+.......                                   
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~  384 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA  384 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred             CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence            1111122223441 1378899999999999999999875433111                                   


Q ss_pred             -----ceeEEEECCCCCEEEEEeC---------------------------------------------CCcEEEEEccC
Q 012996          220 -----VIDAIALDPAEHVFYAGSR---------------------------------------------DGSIYIAALNA  249 (451)
Q Consensus       220 -----~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~  249 (451)
                           .-..++++|+..++++...                                             +|.|+.||+.+
T Consensus       385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t  464 (689)
T 1yiq_A          385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK  464 (689)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred             cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence                 0112688888888887643                                             36688888887


Q ss_pred             CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEEecCce-ee
Q 012996          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLY-LN  326 (451)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~-l~  326 (451)
                      ++         .+-....+ .++..-.+.. +.+++.|+.||.|+.||..+|+.+.+++...+. ..-+.|..+|+. ++
T Consensus       465 G~---------~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          465 QQ---------AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             TE---------EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CC---------eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            63         23333333 2233334555 889999999999999999999999998865442 245777888864 44


Q ss_pred             ec
Q 012996          327 LG  328 (451)
Q Consensus       327 ~~  328 (451)
                      +.
T Consensus       535 ~~  536 (689)
T 1yiq_A          535 FM  536 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=6.5e-12  Score=110.77  Aligned_cols=237  Identities=12%  Similarity=0.046  Sum_probs=167.8

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      ...+.++++.++|++.++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||...     
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-----   92 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-----   92 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-----
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCC-----
Confidence            4578999999999988887778899999987 55433 2233346789999999998877776678899999741     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-ee-cccceeEEEECCCCCEEEEE
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAG  236 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~  236 (451)
                            .............+.++++.+++  .++++...++.|..||.. ++.... +. ....+..++++++++++++.
T Consensus        93 ------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  163 (300)
T 2qc5_A           93 ------GFTEYPLPQPDSGPYGITEGLNG--DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTE  163 (300)
T ss_dssp             ------CEEEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             ------CeEEecCCCCCCCCccceECCCC--CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence                  11111122233567888888776  677776668899999987 554422 22 23568899999999966666


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE-eecCCCCee
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVN  314 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~  314 (451)
                      ..++.|..+|. .+.        ........+...+.++++++ +.+.++....+.|.+||. +++.... +..+...+.
T Consensus       164 ~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~  233 (300)
T 2qc5_A          164 NQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPH  233 (300)
T ss_dssp             TTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             cCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCce
Confidence            66788999988 332        11112223446788999999 877777777788999998 5554432 333456789


Q ss_pred             EEEEEecCceeeeccCCCCccccccCC
Q 012996          315 NILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       315 ~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +++++++|...++...++.|..++..+
T Consensus       234 ~i~~d~~g~l~v~~~~~~~i~~~~~~g  260 (300)
T 2qc5_A          234 AITAGKNSEIWFTEWGANQIGRITNDN  260 (300)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred             EEEECCCCCEEEeccCCCeEEEECCCC
Confidence            999999998777776778888888743

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=2e-13  Score=122.62  Aligned_cols=179  Identities=10%  Similarity=0.062  Sum_probs=133.2

Q ss_pred             CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i  203 (451)
                      ++..+++++...++++|+.+ .+.+|++.................. ...+.. |+.++|  ++  .+|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~--~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG--DQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET--TEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC--CEEEEE-cCCcEEE
Confidence            68999999999999999998 5666998665422110111111111 223556 999999  55  788888 8899999


Q ss_pred             EEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996          204 WSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (451)
Q Consensus       204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  281 (451)
                      ||+++........ +...+.++.+.+..  +++++.||.+.+||+....         ..    .+...|++++||| | 
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---------~~----~~~~~Vs~v~WSpkG-  174 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---------TK----QLAQNVTSFDVTNSQ-  174 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---------EE----EEEESEEEEEECSSE-
T ss_pred             EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---------cc----cccCCceEEEEcCCc-
Confidence            9998766544443 56667777766543  8889999999999998763         11    1456899999999 7 


Q ss_pred             EEEEEcCCCcEEEEeCCCCce--EEEe------e---cCCCCeeEEEEEecCceeee
Q 012996          282 LLISGSEDGMVRVWDPITHNI--VRMF------R---LAKGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       282 ~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~s~~~~~l~~  327 (451)
                       ++.|..||++++|+...+..  .+++      .   .|...|.+|.|.+++.+|++
T Consensus       175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence             78899999999999887775  5666      2   36788999999999999976

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.55  E-value=1.8e-12  Score=127.03  Aligned_cols=299  Identities=13%  Similarity=0.112  Sum_probs=189.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCc------eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~   77 (451)
                      .|++++ .++.|..+|..+|+.+.++.........      +..-.  ....+..+++++.+ +.|..+|..+++.....
T Consensus        79 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~v~v~~~d-g~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           79 IMYVSA-SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG--VALWKGKVYVGAWD-GRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             EEEEEC-GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEC-CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCC--ceEECCEEEEEcCC-CEEEEEECCCCCEEeee
Confidence            345556 6789999999999999888654321000      11111  22245666666666 99999999999887664


Q ss_pred             cCC------CCeeEEEECCCCcEEEEecc------CCCEEEEEcCCCcceeeeccccC----------------------
Q 012996           78 LPA------EPIKPIAANSHGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYR----------------------  123 (451)
Q Consensus        78 ~~~------~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~----------------------  123 (451)
                      ...      ..+.+--.. .+..+++++.      +|.|+.||..+|+.+..+.....                      
T Consensus       155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            432      112111011 2345555543      68999999999998877643211                      


Q ss_pred             ----------CeeEEEEccCCcEEEEeeCCC-------------------cEEEeeCcchhhhhhhhcccccceecccCC
Q 012996          124 ----------AVTCLVFSEDGSFLISGSEDG-------------------CVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (451)
Q Consensus       124 ----------~v~~~~~~~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (451)
                                ....++++|++..++.++.++                   .|..+|..++.....         .....|
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~---------~~~~~~  304 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH---------YQETPG  304 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE---------EESSTT
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE---------EecCCC
Confidence                      113578888888888877664                   488888866432111         111112


Q ss_pred             c-------CceeEEEEeecCC-eeEEEEeeCCCcEEEEEcCCCceeeeeeccc------------ce-------------
Q 012996          175 T-------LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS------------VI-------------  221 (451)
Q Consensus       175 ~-------~~i~~i~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~i-------------  221 (451)
                      .       ....-+....++. ...++.++.+|.++++|..+|+.+..+....            .+             
T Consensus       305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~  384 (677)
T 1kb0_A          305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD  384 (677)
T ss_dssp             CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred             cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence            1       1111122222331 1578899999999999999999887665211            01             


Q ss_pred             -----------eEEEECCCCCEEEEEeCC-------------------------------------------CcEEEEEc
Q 012996          222 -----------DAIALDPAEHVFYAGSRD-------------------------------------------GSIYIAAL  247 (451)
Q Consensus       222 -----------~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~d~  247 (451)
                                 ..++++|+..++++...+                                           |.|..||+
T Consensus       385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~  464 (677)
T 1kb0_A          385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP  464 (677)
T ss_dssp             CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred             ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence                       146888988888886532                                           67888888


Q ss_pred             cCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCcee
Q 012996          248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYL  325 (451)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l  325 (451)
                      .+++         .+-... +..++....+.. +.+++.++.||.+++||..+++.+.++....+ ...-+.|.++|+.+
T Consensus       465 ~tG~---------~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          465 VAQK---------AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             TTTE---------EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCc---------EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            8763         222322 233444445556 88889999999999999999999999985543 33446677888644


Q ss_pred             e
Q 012996          326 N  326 (451)
Q Consensus       326 ~  326 (451)
                      +
T Consensus       535 v  535 (677)
T 1kb0_A          535 V  535 (677)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=1.7e-12  Score=114.93  Aligned_cols=233  Identities=12%  Similarity=0.047  Sum_probs=156.8

Q ss_pred             CCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           79 PAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      .........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+... .  
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~--  117 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG-Q--  117 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C--
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-C--
Confidence            445677899999998 5677777889999997 454 445555667889999999999776655667899998731 0  


Q ss_pred             hhhhcccccceecccC-CcCceeEEEEeecCCeeEEEE----eeC-------------CCcEEEEEcCCCceeeeeeccc
Q 012996          158 CESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----ASE-------------DRTCKVWSLLKGRLLRNIVFPS  219 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~  219 (451)
                            .........+ ....+.++++.+++  .++++    |..             .+.|..||..+++..... ...
T Consensus       118 ------~~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~  188 (305)
T 3dr2_A          118 ------AHLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD  188 (305)
T ss_dssp             ------EEEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES
T ss_pred             ------EEEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC
Confidence                  0001111111 12346678888887  67775    332             356888887666654433 344


Q ss_pred             ceeEEEECCCCCEEEEEeCC------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcE
Q 012996          220 VIDAIALDPAEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV  292 (451)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i  292 (451)
                      ....++|+|+++.|+++...      +.|+.|++..... .   ......  .........+++++ |+ |.+++.+| |
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~---~~~~~~--~~~~~~pdgi~~d~~G~-lwv~~~~g-v  260 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-H---DRRHFA--SVPDGLPDGFCVDRGGW-LWSSSGTG-V  260 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-E---EEEEEE--CCSSSCCCSEEECTTSC-EEECCSSE-E
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-c---CCeEEE--ECCCCCCCeEEECCCCC-EEEecCCc-E
Confidence            56789999999988887665      7899999875420 0   001111  11234456788998 77 44445554 9


Q ss_pred             EEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                      .+|+. +++.+..+..+. .+.+++|+|+++.|..++.++..+
T Consensus       261 ~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          261 CVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            99997 688888887665 589999999998888777665433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=1.3e-11  Score=110.21  Aligned_cols=227  Identities=13%  Similarity=0.048  Sum_probs=150.9

Q ss_pred             CeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      -..+..|+|+ +.++++...++.|..||..+++.. .+. ....+.++.|+++++++++. .+ .|.+||..++.     
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~-----  120 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV-----  120 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-----
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-----
Confidence            3467889997 556667677889999998876543 232 34679999999999877654 44 49999985421     


Q ss_pred             hcccccceeccc--CCcCceeEEEEeecCCeeEEEEeeC------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCE
Q 012996          161 QRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (451)
Q Consensus       161 ~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (451)
                          ...+....  .....+.++++++++  +++++...      .+.|..++  +++.............++|+|+++.
T Consensus       121 ----~~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          121 ----LTLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTT  192 (326)
T ss_dssp             ----EEEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCE
T ss_pred             ----EEEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCE
Confidence                11111111  112467889998887  55554432      24566666  4544333233345678999999987


Q ss_pred             EEEE-eCCCcEEEEEcc--CC-CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          233 FYAG-SRDGSIYIAALN--AE-SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       233 l~~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      ++++ +.++.|.+|++.  ++ ...    .......+......+..+++.+ +.+.++...++.|.+||. +++.+..+.
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~----~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTG----KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSS----CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             EEEEECCCCEEEEEEcccccCCccc----CceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            7665 456899999986  33 110    0122223333445678899998 877777666788999998 688888888


Q ss_pred             cCCCCeeEEEEE-ecCceeeeccC
Q 012996          308 LAKGPVNNILVV-RRPLYLNLGSF  330 (451)
Q Consensus       308 ~~~~~v~~l~~s-~~~~~l~~~s~  330 (451)
                      .+...+++++|+ |++..|+.++.
T Consensus       268 ~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          268 VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCCcEEEEEecCCCCEEEEEec
Confidence            777789999999 88877755443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=3e-13  Score=121.48  Aligned_cols=174  Identities=10%  Similarity=0.019  Sum_probs=130.3

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---------cee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---------LLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      .++..+++++...++++|+.++ +.+|++.+..         ... ....+.. |+.++|  |+++|+++ .++.|++||
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            4799999999999999999874 6779976543         111 1223556 999999  88999998 889999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                      +.+..           .......|...+.++.+.+.    .+++++.||.|.+||+.++....   +...|.+++|+|+|
T Consensus       113 v~sl~-----------~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          113 LEELS-----------EFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             SSSTT-----------CEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE
T ss_pred             chhhh-----------ccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc
Confidence            96532           22234456667777765533    38888999999999999877643   45689999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee------c---cCCcceeEEEEec-CCEEEEE
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL------S---DHSKAVTCLAYST-GDLLISG  286 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~---~~~~~v~~~~~~~-~~~l~s~  286 (451)
                        +++|..||.+++|+......       ....++      .   +|...|.+|.|.+ +.++++-
T Consensus       175 --~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          175 --LAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             --EEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             --eEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence              78899999999998876531       002222      2   4789999999999 7777763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=7.5e-12  Score=115.14  Aligned_cols=236  Identities=8%  Similarity=0.026  Sum_probs=159.8

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC--CEEEEEcCCCcc
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRL  114 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~  114 (451)
                      .....++  ++++++++++...+ +.|++||..++............. ++|+|+++.|+++..++  .|.+|+...+..
T Consensus       131 ~~P~~la--~d~~g~lyv~d~~~-~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIA--AVGNNTVLAYQRDD-PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEE--ECSTTEEEEEETTT-TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEE--EeCCCCEEEEecCC-CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            3456677  88999876666655 899999998877665444334444 99999999988887766  788998876654


Q ss_pred             eeee----ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec--ccCCcCce--eEEEEeec
Q 012996          115 LKKW----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTGHTLRI--TDIVIGYG  186 (451)
Q Consensus       115 ~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~i--~~i~~~~~  186 (451)
                      ...+    ......+.+++++|++..|+.+..++.|..||..+..         ......  ..++...-  ..++|+++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~---------~~~~~~~~~~g~~~~~P~~~ia~~p~  277 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE---------VTLIKQLELSGSLGTNPGPYLIYYFV  277 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC---------EEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC---------EEEEecccccCCCCCCccccEEEeCC
Confidence            4343    2245677899999954455557778899999985421         111100  11122222  38999985


Q ss_pred             CCeeEEEEeeCCCcEEEEEcCCCceeeeeec---------------ccceeEEEECCCCCEEEEEe-CCCcEEEEEccCC
Q 012996          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVF---------------PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAE  250 (451)
Q Consensus       187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  250 (451)
                      +. .++++-...+.|+.|+.... .......               -.....++++|+++++++-. .++.|+.|++..+
T Consensus       278 ~g-~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          278 DS-NFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TT-EEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CC-EEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            32 67777778889999997543 2221111               13478999999999777777 7889999997554


Q ss_pred             CCCCCCCCceeeeeeccC---------------CcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          251 SPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      .          +..+.++               -.....+++++ +.++++-..++.|+.+++
T Consensus       356 ~----------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          356 Y----------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             E----------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             E----------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            2          2222222               24678899999 888888888888887764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.52  E-value=1.1e-12  Score=117.63  Aligned_cols=290  Identities=13%  Similarity=0.071  Sum_probs=181.9

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCe
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPI   83 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v   83 (451)
                      |..++ .++.|..|| .+++....+..   +...+..+.  ..+++.. .+++.  + |..+|. ++....... .....
T Consensus        33 l~v~t-~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~--~~~~g~l-~v~t~--~-l~~~d~-~g~~~~~~~~~~~~~  100 (330)
T 3hxj_A           33 IYLGS-SNKNLYAIN-TDGSVKWFFKS---GEIIECRPS--IGKDGTI-YFGSD--K-VYAINP-DGTEKWRFDTKKAIV  100 (330)
T ss_dssp             EECSS-TTTTTEEEC-TTSCEEESSCG---GGEEEECCE--ETTTTEE-CCSSC--E-EEEECC-CGGGGGGSCC-----
T ss_pred             EEEEc-CCCEEEEEC-CCCcEEEEEec---CCCcccceE--EecCCcE-EEecC--c-EEEECC-CCcEEEEEECCCCcc
Confidence            45566 788999999 88888665432   112223333  4345554 34433  4 888886 433322222 22222


Q ss_pred             eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      ....+.  +..+.+++.++.|..+|.. ++.......+...+.++...+++. ++.++.++.|..+|.. +         
T Consensus       101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g---------  166 (330)
T 3hxj_A          101 SDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G---------  166 (330)
T ss_dssp             CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S---------
T ss_pred             cCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C---------
Confidence            233333  4556777888899999988 777766665656667777777776 5667778899999984 1         


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI  242 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (451)
                        .....+......+.++....++  . ++.++  +.+..+| .+++....+. ....+.++..++++. +++++.++.+
T Consensus       167 --~~~~~~~~~~~~~~~~~~d~~g--~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl  237 (330)
T 3hxj_A          167 --TEKWRFKTNDAITSAASIGKDG--T-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHL  237 (330)
T ss_dssp             --CEEEEEECSSCCCSCCEECTTC--C-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEE
T ss_pred             --CEeEEEecCCCceeeeEEcCCC--E-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeE
Confidence              1222222233445556655554  4 44444  8899999 7777766655 335677888888764 5667777888


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      ..+|....          .+..+......+.++...++..|..++.+|.|..+|. +++.+..+......+.++..+++|
T Consensus       238 ~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g  306 (330)
T 3hxj_A          238 YAINPDGT----------EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENG  306 (330)
T ss_dssp             EEECTTSC----------EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTC
T ss_pred             EEECCCCC----------EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCC
Confidence            88874332          2223333333444555655567778888989999995 788877777666678888887877


Q ss_pred             ceeeeccCCCCccccccCC
Q 012996          323 LYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       323 ~~l~~~s~d~~i~iw~~~~  341 (451)
                      . |..++.+|.+.+.....
T Consensus       307 ~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          307 T-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             C-EEEECTTSCEEEEEC--
T ss_pred             E-EEEEcCCCeEEEEeccc
Confidence            5 55677889888776553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.49  E-value=3.1e-11  Score=106.35  Aligned_cols=218  Identities=10%  Similarity=0.081  Sum_probs=143.3

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc----c
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H  121 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~  121 (451)
                      |++++..+..+...++.|..||..++..... .....+.+++++|+|+++++ . ++.|.+||..+++.......    .
T Consensus        20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~   96 (297)
T 3g4e_A           20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKK   96 (297)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCS
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCC
Confidence            8886555444444348999999988765432 34578999999999996555 3 46799999987765432221    1


Q ss_pred             cCCeeEEEEccCCcEEEEeeCC---------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996          122 YRAVTCLVFSEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l  192 (451)
                      ...+.+++++|+|+++++...+         ..-.+|.+..         . .. ...+..+......++|++++. .++
T Consensus        97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---------~-g~-~~~~~~~~~~pngi~~spdg~-~ly  164 (297)
T 3g4e_A           97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP---------D-HH-VKKYFDQVDISNGLDWSLDHK-IFY  164 (297)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT---------T-SC-EEEEEEEESBEEEEEECTTSC-EEE
T ss_pred             CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC---------C-CC-EEEEeeccccccceEEcCCCC-EEE
Confidence            2357889999999976654322         2335555422         1 11 111222334567899999873 344


Q ss_pred             EEeeCCCcEEEEEc--CCCcee--eee---e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          193 VSASEDRTCKVWSL--LKGRLL--RNI---V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       193 ~s~~~d~~i~iwd~--~~~~~~--~~~---~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                      ++.+.++.|.+||+  .++...  ..+   . ....+..++++++|++.++....+.|..||..++         +.+..
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---------~~~~~  235 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---------KRLQT  235 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---------CEEEE
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---------eEEEE
Confidence            56666889999997  455432  112   1 2356789999999987777777888999998865         34556


Q ss_pred             eccCCcceeEEEEe-c-CCEEEEEc
Q 012996          265 LSDHSKAVTCLAYS-T-GDLLISGS  287 (451)
Q Consensus       265 ~~~~~~~v~~~~~~-~-~~~l~s~~  287 (451)
                      +..+...+++++|. | ++.|+.++
T Consensus       236 i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          236 VKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EECCCCCceEEEEeCCCCCEEEEEc
Confidence            66666789999998 6 55544443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.47  E-value=5e-12  Score=113.32  Aligned_cols=268  Identities=8%  Similarity=-0.091  Sum_probs=173.7

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCC---------CCCccEEEEECCCCceeeeec-C----
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQVEVKSL-P----   79 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~d~g~i~vw~~~~~~~~~~~~-~----   79 (451)
                      +|.+.|..+++.+.++.....+  .   +.  ++|+++++.++.         ..++.|.+||..+.+...... +    
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~---i~--~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--L---AV--AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--E---EE--ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--c---eE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence            7889999999999999876543  3   44  999999999886         234899999999988765542 2    


Q ss_pred             ---CCCeeEEEECCCCcEEEEecc--CCCEEE--EEcCCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeC
Q 012996           80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYM--WEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSL  151 (451)
Q Consensus        80 ---~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~  151 (451)
                         ......++++|||++++++..  +..+.+  +|+.+   +..+... +.   ..+.|++ ..+++.+.||.+.+.|+
T Consensus       120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence               135779999999999998864  356888  88877   4444321 11   1223433 34556677888888888


Q ss_pred             cchhhhhhhhcccccce----ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc--eeeeeec--------
Q 012996          152 LTVFEECESQRASHLYL----HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIVF--------  217 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~--------  217 (451)
                      .+....      .....    ..+.....+.   . .+++  ..++..+. +.+.+.|..+..  .+..+..        
T Consensus       193 ~~~~~~------~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          193 AAAPAA------AGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             CSSCCC------CEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred             cccccc------CCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence            540000      00000    0111112222   2 4444  34444445 899999986532  2332221        


Q ss_pred             ---ccceeEEEECCCCCEEEEEeC---------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EE
Q 012996          218 ---PSVIDAIALDPAEHVFYAGSR---------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LL  283 (451)
Q Consensus       218 ---~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l  283 (451)
                         +.....++++|+++.++++..         ++.+.++|+.+.+         .+..+... .....|+|+| ++ .+
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---------vv~~i~vg-~~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPISNG-HDSDAIIAAQDGASDN  329 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCEEE-EEECEEEECCSSSCEE
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---------EEEEEECC-CCcceEEECCCCCEEE
Confidence               122233789999999887643         2356699998863         34444332 2688999999 76 56


Q ss_pred             EEEc-CCCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996          284 ISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (451)
Q Consensus       284 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (451)
                      ++.. .++.|.++|+.+++.+.++..... -..+++.
T Consensus       330 va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~  365 (368)
T 1mda_H          330 YANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ  365 (368)
T ss_dssp             EEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred             EEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence            6666 599999999999999999986544 3455544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=3.3e-11  Score=108.46  Aligned_cols=244  Identities=9%  Similarity=0.023  Sum_probs=157.1

Q ss_pred             CCeeEEEECCCCcEEEEec--cCCCEEEEEcCCCcceeee-------ccccCCeeEEEEccCCcEEEEeeC-----CCcE
Q 012996           81 EPIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKW-------HAHYRAVTCLVFSEDGSFLISGSE-----DGCV  146 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i  146 (451)
                      ..+..++++|+|+++++..  .++.++||.+.+++.. .+       ..|...+.+++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988853  2343555555455432 22       235568899999999886665433     5789


Q ss_pred             EEeeCcchhhhhhhhcccccceecc------cCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCceeeeeec
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSF------TGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRNIVF  217 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~  217 (451)
                      .+||+.++.           .+..+      ..+...+.++++++++. ..+++..   .++.|.+||+.+++..+.+..
T Consensus        96 ~~~d~~tg~-----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           96 VAWDTLNNQ-----------LSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             EEEETTTTE-----------EEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             EEEECCCCe-----------EEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            999986532           11111      12334568899987542 4555555   678999999987765543311


Q ss_pred             ------------------------------ccceeEEEECCCCCEEEEEeCCC-cEEEEEccCCCCCCCCCCceeee--e
Q 012996          218 ------------------------------PSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIG--S  264 (451)
Q Consensus       218 ------------------------------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~--~  264 (451)
                                                    ...+..++|+|+++.|+++...+ .++.++......... .......  .
T Consensus       164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~  242 (343)
T 2qe8_A          164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL-TDAELGSKIE  242 (343)
T ss_dssp             CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC-CHHHHHTTCE
T ss_pred             CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC-ChhhhhcceE
Confidence                                          02357899999999998887666 565555432110000 0000000  1


Q ss_pred             eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          265 LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       265 ~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ..++......+++++ +.++++...++.|.+||..+++....... +....++++|.+++.++++.+..+.+.+|.
T Consensus       243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            123445677899999 99999988999999999856764333332 244689999999998888876666665554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=1.6e-11  Score=121.24  Aligned_cols=239  Identities=11%  Similarity=0.061  Sum_probs=153.6

Q ss_pred             CceEEecceEeeccCcccCC----CCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCC---------
Q 012996           37 HGLACVGQRFLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD---------  103 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~----~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------  103 (451)
                      ..+..+.  |||+|+++|.+    |.+...|++||+.+++......+......++|+ ||+.|+.++.+..         
T Consensus       129 ~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          129 TALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             CEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             EEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            4566666  99999999842    333378999999998864432222224678999 9999988877743         


Q ss_pred             ----EEEEEcCCCcc----eeeecc-ccCCeeEEEEccCCcEEEEeeC----CCcEEEeeCcchhhhhhhhcccccceec
Q 012996          104 ----IYMWEVASGRL----LKKWHA-HYRAVTCLVFSEDGSFLISGSE----DGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus       104 ----i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                          |++|++.++..    +..... |...+..+.|+|||++|+....    ++.|.++|+.+.          ......
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~  275 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE----------NAPLLT  275 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST----------TCCCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC----------CCceEE
Confidence                99999877643    223333 4556788999999998864432    347999998542          112233


Q ss_pred             ccCCcCceeEEEEeecCCeeEEEEeeCC---CcEEEEEcCCCce--eee-eecccceeEEEECCCCCEEEEEeCCC---c
Q 012996          171 FTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRL--LRN-IVFPSVIDAIALDPAEHVFYAGSRDG---S  241 (451)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~--~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg---~  241 (451)
                      +..+....... +++++. .+++.+..+   +.|..+|+.++..  ... +.+...+.  .|+++++.|+....++   .
T Consensus       276 l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             EECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred             EeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence            44455554444 555553 455555444   5799999987654  223 33444443  8889888887765544   6


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEec-CCEEEEEcCC----CcEEEEeCCCCce
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNI  302 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~l~s~~~d----g~i~iwd~~~~~~  302 (451)
                      |++|++....          ...+. .+...+..+.+++ +..++....+    +.|..||+.+++.
T Consensus       352 l~~~d~~g~~----------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          352 VEQFDYEGKR----------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEECTTSCE----------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEECCCCe----------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            8888887532          12222 2345677777787 5555544433    7899999887653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=5.1e-12  Score=124.88  Aligned_cols=241  Identities=15%  Similarity=0.080  Sum_probs=153.8

Q ss_pred             CCCeeEEEECCCCcEEEEe-----ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc---------
Q 012996           80 AEPIKPIAANSHGTYIAGG-----GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC---------  145 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---------  145 (451)
                      ...+..++|||||++||.+     +....|++||+.+++.+... .+......++|+ |++.|+.++.+..         
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            3468888999999999853     33356999999999865431 111113568899 9999998887743         


Q ss_pred             ----EEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecCCeeEEE-EeeC---CCcEEEEEcCCCc-eeeee
Q 012996          146 ----VRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIV-SASE---DRTCKVWSLLKGR-LLRNI  215 (451)
Q Consensus       146 ----i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~-s~~~---d~~i~iwd~~~~~-~~~~~  215 (451)
                          |.+|++.+...       ....+..... |.....++.+++++  ++|+ +.+.   +..|+++|+.++. ....+
T Consensus       206 ~~~~v~~~~lgt~~~-------~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQE-------DDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             CCCEEEEEETTSCGG-------GCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             CCcEEEEEECCCCcc-------cceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                89999865211       1123333344 55567788999998  5554 3332   3589999997763 23333


Q ss_pred             e-cccceeEEEECCCCCEEEEEeC-C---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-
Q 012996          216 V-FPSVIDAIALDPAEHVFYAGSR-D---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-  288 (451)
Q Consensus       216 ~-~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~-  288 (451)
                      . ........ +++++..|+..+. +   +.|..+|+.+...       .....+..|...+.  .|++ ++.|+.... 
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHSGSGYLFAEYMV  346 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence            3 33333343 6666666655443 3   5789999887531       11234445555554  8888 877776655 


Q ss_pred             CC--cEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCC----CCccccccCCC
Q 012996          289 DG--MVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHGS  342 (451)
Q Consensus       289 dg--~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d----~~i~iw~~~~~  342 (451)
                      +|  .|++||+..+ ....+.. ..+.+..+.++|++..|+....+    +.+..|++.+.
T Consensus       347 ~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          347 DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            44  6899998744 4455543 34567788888888877654433    67888887654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.44  E-value=2.2e-12  Score=115.67  Aligned_cols=250  Identities=10%  Similarity=-0.091  Sum_probs=165.9

Q ss_pred             cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCCcceeeeccc-------cCC
Q 012996           62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH-------YRA  124 (451)
Q Consensus        62 ~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~  124 (451)
                      .|.++|..+.+......-.... .+.++||+++++++.          .++.|.+||+.+++.+.++..+       ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence            8889999998877554433333 899999999998875          3678999999999999888643       134


Q ss_pred             eeEEEEccCCcEEEEeeC--CCcEEE--eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          125 VTCLVFSEDGSFLISGSE--DGCVRI--WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       125 v~~~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      ...+.++|||++++++..  +..+.+  +|+.+              +..+.. .+.   ..+.+++. ..+++.+.||.
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--------------v~~i~v-~~~---~~~~p~g~-~~~~~~~~dg~  186 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--------------DQLTKS-ASC---FHIHPGAA-ATHYLGSCPAS  186 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--------------EEEEEC-SSC---CCCEEEET-TEEECCCCTTS
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--------------ceEEEC-CCc---eEEccCCC-eEEEEEcCCCC
Confidence            578999999999998864  457888  99844              111111 001   12334443 45567778899


Q ss_pred             EEEEEcCC-----Cceee----eeec-ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec----
Q 012996          201 CKVWSLLK-----GRLLR----NIVF-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS----  266 (451)
Q Consensus       201 i~iwd~~~-----~~~~~----~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----  266 (451)
                      +.+.|+.+     ++...    .+.. ..+.   . .+++..++..+. +.+.+.|+.....       ..+..+.    
T Consensus       187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-------~v~~~~~~~~~  254 (368)
T 1mda_H          187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-------TMKAAIDGNES  254 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-------EEECCCCSSCT
T ss_pred             EEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-------eEEEEEEeccc
Confidence            98899876     44331    1111 1222   3 555566555555 9999999865321       1111110    


Q ss_pred             ---cC---CcceeEEEEec-CCEEEEEcC---------CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCce-eeecc
Q 012996          267 ---DH---SKAVTCLAYST-GDLLISGSE---------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY-LNLGS  329 (451)
Q Consensus       267 ---~~---~~~v~~~~~~~-~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~s  329 (451)
                         .+   ......++++| ++.++.+..         ++.+.++|+.+++.+.++.... ...+++|+|||++ +++..
T Consensus       255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEE
T ss_pred             cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEcc
Confidence               01   11122267999 777765532         2356699999999999987643 6899999999985 45555


Q ss_pred             -CCCCccccccCCCCC
Q 012996          330 -FSNPHTSSRRHGSQL  344 (451)
Q Consensus       330 -~d~~i~iw~~~~~~~  344 (451)
                       .++.|.++|..+.+.
T Consensus       334 ~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          334 AGTEVLDIYDAASDQD  349 (368)
T ss_dssp             TTTTEEEEEESSSCEE
T ss_pred             CCCCeEEEEECCCCcE
Confidence             589999999887553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.42  E-value=6.6e-11  Score=104.66  Aligned_cols=222  Identities=9%  Similarity=0.090  Sum_probs=143.1

Q ss_pred             EEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec
Q 012996           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH  119 (451)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  119 (451)
                      ....  |+|+|+.|+.++..++.|..|+.. +.......+...+..++++++|+++++...++.|.+|+.. ++......
T Consensus        48 egp~--~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~  123 (305)
T 3dr2_A           48 EGPA--WWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG  123 (305)
T ss_dssp             EEEE--EEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             cCCe--EeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence            3444  999999554444444899999984 4444444456778999999999977776666789999975 55332221


Q ss_pred             ---c-ccCCeeEEEEccCCcEEEE----eeC-------------CCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          120 ---A-HYRAVTCLVFSEDGSFLIS----GSE-------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       120 ---~-~~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                         + ....+.+++++++|+++++    |..             .+.|..||..++           .... +. .....
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-----------~~~~-~~-~~~~p  190 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-----------PLQR-MA-DLDHP  190 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-----------CCEE-EE-EESSE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-----------cEEE-Ee-cCCCC
Confidence               1 1235678999999998886    432             245777776331           1111 11 33456


Q ss_pred             eEEEEeecCCeeEEEEeeCC------CcEEEEEcCCCcee--eeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996          179 TDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLL--RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (451)
                      ..++|++++  ..|+.+...      +.|.+|++..+...  ..+.  .......++++++|+ |++++.+ .|.+|+..
T Consensus       191 ~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~  266 (305)
T 3dr2_A          191 NGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD  266 (305)
T ss_dssp             EEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT
T ss_pred             cceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC
Confidence            789999988  666666554      78999998765411  1111  234456789999998 5555544 49999875


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR  293 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~  293 (451)
                      .          ..+..+..+. .+.+++|++ ++.|+.++.++..+
T Consensus       267 g----------~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          267 G----------QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             S----------CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             C----------CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            4          2344444343 588999998 77777777665433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.40  E-value=1.8e-10  Score=102.82  Aligned_cols=215  Identities=13%  Similarity=0.089  Sum_probs=138.9

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc----c
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H  121 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~  121 (451)
                      |+|+++.++.++..++.|..|+..++...... ....+.+++++|+|+++++. .+ .|.+||..+++.......    .
T Consensus        56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~  132 (326)
T 2ghs_A           56 FDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLP  132 (326)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCT
T ss_pred             EeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCC
Confidence            88876555444443489999999877654332 35689999999999877764 44 499999888775432221    1


Q ss_pred             cCCeeEEEEccCCcEEEEeeCC----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEee
Q 012996          122 YRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSAS  196 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~  196 (451)
                      ...+.+++++|+|+++++...+    +...+|.+.++         .   ...+..+......++|++++  +.+ ++.+
T Consensus       133 ~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g---------~---~~~~~~~~~~~~~i~~s~dg--~~lyv~~~  198 (326)
T 2ghs_A          133 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG---------K---VTKLFADISIPNSICFSPDG--TTGYFVDT  198 (326)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT---------E---EEEEEEEESSEEEEEECTTS--CEEEEEET
T ss_pred             CCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC---------c---EEEeeCCCcccCCeEEcCCC--CEEEEEEC
Confidence            2358899999999876655422    23344444221         0   11111222345788999887  555 4445


Q ss_pred             CCCcEEEEEcC--CC-ce-----eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996          197 EDRTCKVWSLL--KG-RL-----LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (451)
Q Consensus       197 ~d~~i~iwd~~--~~-~~-----~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (451)
                      .++.|.+||+.  ++ ..     ...+. ....+..++++++|.+.++...++.|..||...          ..+..+..
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g----------~~~~~i~~  268 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG----------NHIARYEV  268 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC----------CEEEEEEC
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC----------CEEEEEEC
Confidence            67899999986  55 32     11111 234578899999998777776778899998743          23445555


Q ss_pred             CCcceeEEEEe-c-CCEEEEEc
Q 012996          268 HSKAVTCLAYS-T-GDLLISGS  287 (451)
Q Consensus       268 ~~~~v~~~~~~-~-~~~l~s~~  287 (451)
                      +...+++++|+ + ++.|+.++
T Consensus       269 ~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          269 PGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             SCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCCcEEEEEecCCCCEEEEEe
Confidence            66679999998 7 66554444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.37  E-value=2e-10  Score=112.46  Aligned_cols=243  Identities=9%  Similarity=0.056  Sum_probs=156.3

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecC-CCCC-CceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSC-ASPP-HGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~   77 (451)
                      .|++++ .|+.|..+|..+|+.+.++... .... ..+....  ...++..++..+.    .+|.|+.||..+++.....
T Consensus       130 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p--~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          130 KVYVGA-WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP--RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc--EEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            456667 7999999999999999888764 2111 1222212  2234444433332    1389999999999877654


Q ss_pred             cCCC---------------------------------CeeEEEECCCCcEEEEeccCC-------------------CEE
Q 012996           78 LPAE---------------------------------PIKPIAANSHGTYIAGGGQSG-------------------DIY  105 (451)
Q Consensus        78 ~~~~---------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~  105 (451)
                      ....                                 ....++++|++..+++++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            3211                                 113578889888888877654                   499


Q ss_pred             EEEcCCCcceeeecc--cc-------CCeeEEEEccCC---cEEEEeeCCCcEEEeeCcchhhhhhhhccccc-------
Q 012996          106 MWEVASGRLLKKWHA--HY-------RAVTCLVFSEDG---SFLISGSEDGCVRIWSLLTVFEECESQRASHL-------  166 (451)
Q Consensus       106 iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------  166 (451)
                      .+|..+|+.+..++.  |.       .....+....+|   ..++.++.+|.+.++|..++............       
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            999999998877653  21       122233344467   68999999999999999876432211100000       


Q ss_pred             ---cee------------cccCCc--CceeEEEEeecCCeeEEEEeeC--------------------------------
Q 012996          167 ---YLH------------SFTGHT--LRITDIVIGYGGVSATIVSASE--------------------------------  197 (451)
Q Consensus       167 ---~~~------------~~~~~~--~~i~~i~~~~~~~~~~l~s~~~--------------------------------  197 (451)
                         ++.            .+.+..  ..-..++++|+.  .++++...                                
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT--GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT--TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCC--CEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence               000            000000  000245666665  45555432                                


Q ss_pred             -----------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          198 -----------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       198 -----------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                                 .|.|..||+.+++.+..+.+...+....+...+..+++++.||.+++||..+++
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence                       278999999999999888876666666667788899999999999999999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.36  E-value=3.3e-10  Score=105.69  Aligned_cols=290  Identities=11%  Similarity=0.033  Sum_probs=197.9

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCC------------------------------------CCceEEecceEe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP------------------------------------PHGLACVGQRFL   47 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~------------------------------------~~~v~~~~~~~~   47 (451)
                      .+.||+ ..|.++|+-+.+++.++.+.-+...                                    ........  .|
T Consensus        17 ~f~s~g-~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~--~s   93 (595)
T 1fwx_A           17 GFWSSG-QSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVH--MS   93 (595)
T ss_dssp             EEECCB-TTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEE--EE
T ss_pred             EEeeCC-cCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccc--cC
Confidence            467777 9999999999999988766432110                                    01111122  44


Q ss_pred             e-----ccCcccCCCCCCccEEEEECCCCceee--eecCCCCeeEEEE-C-CCCcEEEEec------------------c
Q 012996           48 A-----SSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAA-N-SHGTYIAGGG------------------Q  100 (451)
Q Consensus        48 ~-----~~~~l~~~~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~  100 (451)
                      .     ||+++.+...+++.|.+.|+.+.+...  .......+..+++ + |++.++++++                  .
T Consensus        94 ~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           94 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            4     899999988877899999999988554  3334567889998 5 9999998884                  3


Q ss_pred             CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC---------------cEEEeeCcchhhhhhhhcccc
Q 012996          101 SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---------------CVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus       101 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      ++.+.++|..+.+...++.-.. ....++++|+|+++++.+.+.               .|.+.|......         
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~---------  243 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK---------  243 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH---------
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE---------
Confidence            4679999999988888776433 456788999999999888764               244444422110         


Q ss_pred             cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--Cce-eeeeecccceeEEEECCCCCEEEEEe-CCCc
Q 012996          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRL-LRNIVFPSVIDAIALDPAEHVFYAGS-RDGS  241 (451)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  241 (451)
                                       +.++|...++      +.|.+.|.++  ++. +..+..+....++.++|||+++++++ .+..
T Consensus       244 -----------------~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~  300 (595)
T 1fwx_A          244 -----------------AIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT  300 (595)
T ss_dssp             -----------------HHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB
T ss_pred             -----------------eccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCe
Confidence                             1122321222      5599999998  555 66777777889999999999888765 5779


Q ss_pred             EEEEEccCCCCC---CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----------CceEEEee
Q 012996          242 IYIAALNAESPS---TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMFR  307 (451)
Q Consensus       242 i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~  307 (451)
                      |.++|+.+....   .-.......... .-......++|+| |...++...|+.|.+||+.+          .+.+.++.
T Consensus       301 VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid  379 (595)
T 1fwx_A          301 VTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD  379 (595)
T ss_dssp             EEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE
T ss_pred             EEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee
Confidence            999999853100   000000112222 2235678899999 85555667899999999877          56777887


Q ss_pred             cCCCCe-----eEEEEEecCceeeeccC
Q 012996          308 LAKGPV-----NNILVVRRPLYLNLGSF  330 (451)
Q Consensus       308 ~~~~~v-----~~l~~s~~~~~l~~~s~  330 (451)
                      .|-.+-     .++.++|||++|+++..
T Consensus       380 V~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          380 VHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cccccccceeccceEeCCCCCEEEEcCC
Confidence            765432     23345799999988653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.34  E-value=1.4e-09  Score=99.24  Aligned_cols=268  Identities=9%  Similarity=0.034  Sum_probs=166.3

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeecC----------CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLP----------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  118 (451)
                      .+..+.+++.+ +.|..+|..+++.......          ...+.+. ...++..+++++.++.|..+|..+|+.+...
T Consensus        52 ~~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTT-SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCC-CeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            34555566655 8999999998887655433          1222222 2224566777888999999999999988776


Q ss_pred             ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (451)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d  198 (451)
                      .............  +..++.++.++.|..+|..++..........  ..........    .... +   ..++.++.+
T Consensus       130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~----~~~~-~---~~v~~g~~~  197 (376)
T 3q7m_A          130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDM--PSLSLRGESA----PTTA-F---GAAVVGGDN  197 (376)
T ss_dssp             ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCCC----CEEE-T---TEEEECCTT
T ss_pred             eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC--CceeecCCCC----cEEE-C---CEEEEEcCC
Confidence            5443222222232  4467888889999999986643211110000  0000000111    1111 2   467888889


Q ss_pred             CcEEEEEcCCCceeeeeecccce-----e---EEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996          199 RTCKVWSLLKGRLLRNIVFPSVI-----D---AIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~~~~~i-----~---~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (451)
                      +.+..+|..+++.+.......+.     .   .+...|  .+..+++++.++.++.+|..++..         +....  
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~---------~w~~~--  266 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI---------MWKRE--  266 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE---------EEEEC--
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE---------Eeecc--
Confidence            99999999999988776633211     0   011222  357788888999999999988742         21221  


Q ss_pred             CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          269 SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       269 ~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      ......+... +..++.++.+|.|..+|..+++.+..... ....+.....  .+..|+.++.+|.+..++..+++.
T Consensus       267 ~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          267 LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence            1223334333 77888888899999999999998877652 2222333333  356788888899999999776654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.33  E-value=3.3e-09  Score=95.55  Aligned_cols=219  Identities=15%  Similarity=0.176  Sum_probs=146.1

Q ss_pred             CCCcEEEE-eccCCCEEEEEcCCC----cceeeec-------cccCCeeEEEEccCCcEEEEeeCC------CcEEEeeC
Q 012996           90 SHGTYIAG-GGQSGDIYMWEVASG----RLLKKWH-------AHYRAVTCLVFSEDGSFLISGSED------GCVRIWSL  151 (451)
Q Consensus        90 ~~~~~l~~-~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~  151 (451)
                      +++++|++ |..++.|+|+|+.+.    +...++.       ........+..+|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77887765 556788999999755    4455552       111245667888999 77766655      78999998


Q ss_pred             cchhhhhhhhcccccceecccC--Cc-CceeEEEEeecCCeeEEEEee-------------------CCCcEEEEEcCCC
Q 012996          152 LTVFEECESQRASHLYLHSFTG--HT-LRITDIVIGYGGVSATIVSAS-------------------EDRTCKVWSLLKG  209 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~~i~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~  209 (451)
                      .+           ...+..+..  .. ..-..+.|+|++  +.+++..                   .+.+|.+||+.++
T Consensus       172 ~T-----------~~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          172 YS-----------FEPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             TT-----------CCEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CC-----------CeEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            65           233333331  11 223457778887  6777775                   3689999999999


Q ss_pred             ceeeeeecc---cceeEEEE--CCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCceeeeee--cc---------
Q 012996          210 RLLRNIVFP---SVIDAIAL--DPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSL--SD---------  267 (451)
Q Consensus       210 ~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~---------  267 (451)
                      +.+.++...   .....+.|  +|+++++++++.      ++.|.+|....+.       +.....+  ..         
T Consensus       239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEEECCEECCSSCCG
T ss_pred             cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEeCCCccccccccc
Confidence            888888754   33445545  999999998874      5688877665421       1111110  00         


Q ss_pred             -------CCcceeEEEEec-CCEEEEEcC-CCcEEEEeCCC---CceEEEeecCC--------------CCeeEEEEEec
Q 012996          268 -------HSKAVTCLAYST-GDLLISGSE-DGMVRVWDPIT---HNIVRMFRLAK--------------GPVNNILVVRR  321 (451)
Q Consensus       268 -------~~~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~l~~s~~  321 (451)
                             -......|.+|+ +++|.++.. .+.|.+||+..   .+.+..+....              +.-..++++||
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD  391 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD  391 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence                   024578899999 888877765 67899999853   35565554321              12588999999


Q ss_pred             Cceeeecc
Q 012996          322 PLYLNLGS  329 (451)
Q Consensus       322 ~~~l~~~s  329 (451)
                      |++|+++.
T Consensus       392 Gk~LyVaN  399 (462)
T 2ece_A          392 GRRVYVTN  399 (462)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEEc
Confidence            99998876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.32  E-value=6.7e-13  Score=120.56  Aligned_cols=202  Identities=11%  Similarity=0.079  Sum_probs=113.7

Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.|..||..++...           ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-----------w~   74 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-----------TK   74 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS-----------EE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-----------ee
Confidence            577899999999999999999999988875  55666566667778888889999999999664221           11


Q ss_pred             ccCCcC-cee-EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996          171 FTGHTL-RIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (451)
Q Consensus       171 ~~~~~~-~i~-~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (451)
                      +..+.. .+. +..+. .+  ..+++++.++.++.||..+|+.+..+.....   ..++|++..+++++.++.|+.||..
T Consensus        75 ~~~~~~~~~~~sp~~~-~~--~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           75 LPFTIPELVQASPCRS-SD--GILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSS
T ss_pred             eeccCccccccCceEe-cC--CEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECC
Confidence            111100 000 00111 12  5778888999999999999998877764432   3456788999999999999999998


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEec----CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE-EEEEecCc
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN-ILVVRRPL  323 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~  323 (451)
                      ++....         .+..+  ......+.+    +..+++++.||.|..||..+++.+.++.. .+++.. ..++++|.
T Consensus       149 tG~~~W---------~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          149 TRELRW---------NATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSSCCC---------EEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred             CCCEEE---------eEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence            875322         11110  011122222    16788889999999999999999888774 344443 34445553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.30  E-value=2.5e-14  Score=130.03  Aligned_cols=254  Identities=11%  Similarity=0.079  Sum_probs=141.3

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC-Cee-
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-AVT-  126 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~-  126 (451)
                      ++..+++++.+ |.|..||..+++....... +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~d-g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLD-GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETT-SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCC-CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            46677777777 9999999999998766555 6666666677888888888999999999999988766643321 110 


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (451)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~  206 (451)
                      +..+. ++..+++++.|+.|..||..++..           +..+..+.    ...++|.+  ..+++++.++.|+.||.
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~-----------~w~~~~~~----~~~~~p~~--~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEK-----------QQTLSSAF----ADSLSPST--SLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC---------------------------------------EEEEEEEEEEECCCS
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcE-----------EEEecCCC----cccccccC--CEEEEEecCCEEEEEEC
Confidence            11111 345688888999999999976432           22222221    12334444  78889999999999999


Q ss_pred             CCCceeeeeecccceeEEEECCCC---CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CC
Q 012996          207 LKGRLLRNIVFPSVIDAIALDPAE---HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GD  281 (451)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~  281 (451)
                      .+++.+..+.... ....+++++.   ..+++++.+|.++.||..++..         +-... ...++.. ..+++ +.
T Consensus       148 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~---------~W~~~-~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          148 KTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV---------LWIQN-YASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE---------EEEEE-CSSCEEEEEECTTSSC
T ss_pred             CCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcE---------EEEec-CCCceEEEEEecCCce
Confidence            9998877665322 2233344432   5678889999999999988742         22222 2334433 23333 22


Q ss_pred             EE----EEEcCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEe--cCceeeeccCCCCccccccC
Q 012996          282 LL----ISGSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVR--RPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       282 ~l----~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ..    +.+  ++.+..+|..+|+    .+..+... +.+.    +|  .+..|+.++.||.+...+..
T Consensus       217 ~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          217 RKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             EEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred             Eeccceeec--ccceeeeehhcCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCcc
Confidence            11    112  3445666766665    44333321 1121    22  34567777888888888765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.30  E-value=4.2e-09  Score=103.06  Aligned_cols=301  Identities=14%  Similarity=0.130  Sum_probs=180.3

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCc------eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~   78 (451)
                      |++++ .++.|..+|..+|+.+.++.........      ...-.  ....+..+++++.+ +.|..+|..+++......
T Consensus        69 vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           69 IYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRG--VALWGDKVYVGTLD-GRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             EEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEEBTEEEEECTT-SEEEEEETTTCCEEEEEE
T ss_pred             EEEEC-CCCeEEEEECCCChhceEECCCCCccccccccccCCccc--eEEECCEEEEEcCC-CEEEEEECCCCCEeeeec
Confidence            44555 5789999999999999887643221100      00001  12234556666666 999999999998876543


Q ss_pred             CCC--CeeEEEECC--CCcEEEEecc------CCCEEEEEcCCCcceeeecccc--------------------------
Q 012996           79 PAE--PIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHY--------------------------  122 (451)
Q Consensus        79 ~~~--~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~--------------------------  122 (451)
                      ...  ....+..+|  .+..++++..      +|.|+.+|..+|+.+..+....                          
T Consensus       145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~  224 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK  224 (668)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred             cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence            211  011111122  1334555543      5889999999999887764210                          


Q ss_pred             -----CCeeEEEEccCCcEEEEeeCCCc-------------------EEEeeCcchhhhhhhhcccccceecccCCc---
Q 012996          123 -----RAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT---  175 (451)
Q Consensus       123 -----~~v~~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---  175 (451)
                           .....+++.|+...++.++.++.                   |..+|..++.....         .....|.   
T Consensus       225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~---------~~~~~~~~wd  295 (668)
T 1kv9_A          225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH---------YQVTPGDSWD  295 (668)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE---------EESSTTCCSC
T ss_pred             eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE---------eecCCCcccc
Confidence                 01124678887788888877663                   88888866432111         1111121   


Q ss_pred             ----CceeEEEEeecCC-eeEEEEeeCCCcEEEEEcCCCceeeeeeccc-------------c-----------------
Q 012996          176 ----LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------V-----------------  220 (451)
Q Consensus       176 ----~~i~~i~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~-----------------  220 (451)
                          .+.....+..++. ...++.++.+|.++++|..+|+.+..+....             +                 
T Consensus       296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p  375 (668)
T 1kv9_A          296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP  375 (668)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred             ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence                2222222333442 1368999999999999999999885443111             0                 


Q ss_pred             -------eeEEEECCCCCEEEEEe------------------------------------CCCcEEEEEccCCCCCCCCC
Q 012996          221 -------IDAIALDPAEHVFYAGS------------------------------------RDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       221 -------i~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~  257 (451)
                             -..++++|+...+++..                                    .+|.|..||+.+++      
T Consensus       376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~------  449 (668)
T 1kv9_A          376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK------  449 (668)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE------
T ss_pred             CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc------
Confidence                   01257777777766522                                    23678888888764      


Q ss_pred             CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe-eEEEEEecCc-eeeec
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRRPL-YLNLG  328 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~~~  328 (451)
                         .+-....+ .+.....+.. +.+++.++.||.|+.||..+++.+..++...+.. .-+.+..+|+ |++.+
T Consensus       450 ---~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~  519 (668)
T 1kv9_A          450 ---AAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM  519 (668)
T ss_dssp             ---EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ---EEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEE
Confidence               22222222 2333333444 8899999999999999999999999988654321 2344556665 44443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.30  E-value=7.4e-10  Score=108.73  Aligned_cols=243  Identities=9%  Similarity=0.120  Sum_probs=153.8

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecC-C-CCCCceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSC-A-SPPHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~   77 (451)
                      .|++++ .|+.|..+|..+|+.+..+... . .....+.+..  ...++..++..+.    .+|.|..||..+++.....
T Consensus       123 ~v~v~~-~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP--~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          123 KVYVGV-LDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP--RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-cCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc--EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            466677 7999999999999999887653 1 1111222211  2234544443322    1389999999999877554


Q ss_pred             cC--CC------------------------------CeeEEEECCCCcEEEEeccCCC-------------------EEE
Q 012996           78 LP--AE------------------------------PIKPIAANSHGTYIAGGGQSGD-------------------IYM  106 (451)
Q Consensus        78 ~~--~~------------------------------~v~~~~~~~~~~~l~~~~~dg~-------------------i~i  106 (451)
                      ..  ..                              ....++++|++..+++++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            21  00                              1125788898888988887753                   999


Q ss_pred             EEcCCCcceeeecc--cc-------CCeeEEEEccCCc---EEEEeeCCCcEEEeeCcchhhhhhhhcccccceec----
Q 012996          107 WEVASGRLLKKWHA--HY-------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS----  170 (451)
Q Consensus       107 wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----  170 (451)
                      +|..+|+.+..++.  |.       .++.......+|+   .++.++.+|.+.++|..++................    
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999999887753  22       1222222223565   78899999999999998764421110000000000    


Q ss_pred             -------------ccCCcC-----------ceeEEEEeecCCeeEEEEeeC-----------------------------
Q 012996          171 -------------FTGHTL-----------RITDIVIGYGGVSATIVSASE-----------------------------  197 (451)
Q Consensus       171 -------------~~~~~~-----------~i~~i~~~~~~~~~~l~s~~~-----------------------------  197 (451)
                                   +.....           .-..++++|..  .++++...                             
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT--GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC--CEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                         000000           01125566654  44444321                             


Q ss_pred             ----------------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          198 ----------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       198 ----------------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                                      +|.|..||+.+++.+..+.+......-.+...+.++++|+.||.++.||.++++
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence                            478999999999999888866655555666678899999999999999999984

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.24  E-value=6.4e-09  Score=99.67  Aligned_cols=296  Identities=14%  Similarity=0.091  Sum_probs=173.3

Q ss_pred             EeecCCC-CCCeEEEEC-ccCceeeeeecCCCCC-Cc-----eEEecceEeeccCcccCCCCCCccEEEEECCCCceeee
Q 012996            5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-----LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK   76 (451)
Q Consensus         5 l~s~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-----v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~   76 (451)
                      |+.++ . ++.|.-+|. .+|+.+.++....... ..     ...-.  ....+..+++++.+ +.|..+|..+++....
T Consensus        65 vyv~~-~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           65 MYVHS-AFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRG--LAYGAGQIVKKQAN-GHLLALDAKTGKINWE  140 (571)
T ss_dssp             EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEE
T ss_pred             EEEEe-CCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccc--cEEECCEEEEEeCC-CEEEEEECCCCCEEEE
Confidence            44455 5 789999999 8999988775432110 00     00001  11234556666666 9999999999988765


Q ss_pred             ecCCC-----CeeE-EEECCCCcEEEEecc------CCCEEEEEcCCCcceeeeccccCC--------------------
Q 012996           77 SLPAE-----PIKP-IAANSHGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYRA--------------------  124 (451)
Q Consensus        77 ~~~~~-----~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~--------------------  124 (451)
                      .....     .+.+ ... .++ .+++++.      +|.|+.+|..+|+.+..+......                    
T Consensus       141 ~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~  218 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             ecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence            43222     1211 111 134 4555544      789999999999988766422110                    


Q ss_pred             -----------------e-eEEEEccCCcEEEEeeCC----------------CcEEEeeCcchhhhhhhhcccccceec
Q 012996          125 -----------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRASHLYLHS  170 (451)
Q Consensus       125 -----------------v-~~~~~~~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~  170 (451)
                                       + ..+++.++...++.+..+                +.|..+|..++....         ...
T Consensus       219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W---------~~~  289 (571)
T 2ad6_A          219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKW---------GYQ  289 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEE---------EEE
T ss_pred             cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEE---------Eec
Confidence                             0 135666655566655432                258888886643211         111


Q ss_pred             ccCC--------cCceeEEEEeecCCe-eEEEEeeCCCcEEEEEcCCCceeeeeeccc--------------ce------
Q 012996          171 FTGH--------TLRITDIVIGYGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------VI------  221 (451)
Q Consensus       171 ~~~~--------~~~i~~i~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~i------  221 (451)
                      ...|        ..++. +....++.. ..++.++.+|.++++|..+++.+..+....              ++      
T Consensus       290 ~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~  368 (571)
T 2ad6_A          290 KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFA  368 (571)
T ss_dssp             SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGC
T ss_pred             CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccC
Confidence            1111        12221 112234410 256778899999999999999887665321              11      


Q ss_pred             --------------------eEEEECCCCCEEEEEeC-------------------------------------CCcEEE
Q 012996          222 --------------------DAIALDPAEHVFYAGSR-------------------------------------DGSIYI  244 (451)
Q Consensus       222 --------------------~~~~~~~~~~~l~~~~~-------------------------------------dg~i~i  244 (451)
                                          ..++++|+...+++...                                     +|.|+.
T Consensus       369 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a  448 (571)
T 2ad6_A          369 TRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRA  448 (571)
T ss_dssp             CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEE
T ss_pred             CCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEE
Confidence                                23577888788877643                                     467888


Q ss_pred             EEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEEecC
Q 012996          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRP  322 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~  322 (451)
                      ||..+++.         +-.... ...+.+..+.. +..++.++.||.|+.||..+++.+.++...... -.-+.+..+|
T Consensus       449 ~D~~tG~~---------~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G  518 (571)
T 2ad6_A          449 FDLTTGKA---------KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             ECTTTCCE---------EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             EECCCCCE---------EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECC
Confidence            88877642         222211 12222222233 778888999999999999999999988854332 1224466777


Q ss_pred             ceee
Q 012996          323 LYLN  326 (451)
Q Consensus       323 ~~l~  326 (451)
                      +.++
T Consensus       519 ~~yv  522 (571)
T 2ad6_A          519 KQYI  522 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.24  E-value=1.7e-08  Score=87.13  Aligned_cols=240  Identities=10%  Similarity=-0.005  Sum_probs=147.5

Q ss_pred             ccEEEEECCCCcee------eeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC
Q 012996           61 GSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED  133 (451)
Q Consensus        61 g~i~vw~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  133 (451)
                      +.|+.++++.....      ....+...+..++|++++..| ++-..++.|..++.........+.........++++++
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            56777777654321      111123457899999965555 45455788999998765443333333356789999996


Q ss_pred             CcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--CCcEEEEEcCCCc
Q 012996          134 GSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--DRTCKVWSLLKGR  210 (451)
Q Consensus       134 ~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~  210 (451)
                      +..|+ +-...+.|.++++...         ....+  ..........+++++++. .++++...  .+.|..+++.. .
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~---------~~~~~--~~~~~~~P~~i~vd~~~g-~lyv~~~~~~~~~I~~~~~dg-~  156 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGT---------QRRVL--FDTGLVNPRGIVTDPVRG-NLYWTDWNRDNPKIETSHMDG-T  156 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSC---------SCEEE--ECSSCSSEEEEEEETTTT-EEEEEECCSSSCEEEEEETTS-C
T ss_pred             CCeEEEEECCCCEEEEEEcCCC---------CEEEE--EECCCCCccEEEEeeCCC-EEEEEECCCCCcEEEEEecCC-C
Confidence            55444 4455678999988431         11111  111123567899998541 34444333  46888888753 3


Q ss_pred             eeeeee--cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEc
Q 012996          211 LLRNIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS  287 (451)
Q Consensus       211 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~  287 (451)
                      ....+.  .......++++|++..|+++. ..+.|..+|.....         ....... ......++...+.++++..
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~~~-~~~P~gi~~d~~~lyva~~  226 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLEG-LQYPFAVTSYGKNLYYTDW  226 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---------EEEEEEC-CCSEEEEEEETTEEEEEET
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc---------eEEEecC-CCCceEEEEeCCEEEEEEC
Confidence            323222  224578899999877766654 55789999987532         1111222 2334566655344555555


Q ss_pred             CCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCc
Q 012996          288 EDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL  323 (451)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~  323 (451)
                      ..+.|..+|..+++.+.++..... ....+++.|++.
T Consensus       227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            678999999999999998875432 478888888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.22  E-value=1.2e-08  Score=91.96  Aligned_cols=255  Identities=13%  Similarity=0.089  Sum_probs=160.0

Q ss_pred             CCeEEEECcc-----CceeeeeecCCC----CCCce----EEecceEe--eccCcccCCCCCCccEEEEECCCC----ce
Q 012996           13 TGIGCWDLES-----GAEQLRYKSCAS----PPHGL----ACVGQRFL--ASSQLREQPSASSGSILYWSWSKP----QV   73 (451)
Q Consensus        13 g~i~vwd~~~-----~~~~~~~~~~~~----~~~~v----~~~~~~~~--~~~~~l~~~~~d~g~i~vw~~~~~----~~   73 (451)
                      -.|.+-|+..     ++.+..+.....    |..+-    .|++..++  +++++|++.+..++.|.|+|+.+.    +.
T Consensus        43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~  122 (462)
T 2ece_A           43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKI  122 (462)
T ss_dssp             CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEE
T ss_pred             CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCcee
Confidence            3588888886     777766543221    11110    11111246  888998888887799999998644    22


Q ss_pred             eeeec--------CCCCeeEEEECCCCcEEEEeccC------CCEEEEEcCCCcceeeeccccC---CeeEEEEccCCcE
Q 012996           74 EVKSL--------PAEPIKPIAANSHGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHYR---AVTCLVFSEDGSF  136 (451)
Q Consensus        74 ~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~  136 (451)
                      .....        .......+.++|+| +++++..+      |.|.++|..+++.+.++.....   .-..+-|+|+++.
T Consensus       123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~  201 (462)
T 2ece_A          123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV  201 (462)
T ss_dssp             EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred             eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE
Confidence            21110        11245667889999 66665444      7899999999999988863322   2345888999998


Q ss_pred             EEEee-------------------CCCcEEEeeCcchhhhhhhhcccccceecccC--CcCceeEEEE--eecCCeeEEE
Q 012996          137 LISGS-------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HTLRITDIVI--GYGGVSATIV  193 (451)
Q Consensus       137 l~s~~-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~--~~~~~~~~l~  193 (451)
                      +++..                   ...+|.+||+.+           ...+.++..  .......+.|  +|++  ++++
T Consensus       202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-----------~k~~~tI~vg~~g~~P~~i~f~~~Pdg--~~aY  268 (462)
T 2ece_A          202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-----------RKRIHSLTLGEENRMALELRPLHDPTK--LMGF  268 (462)
T ss_dssp             EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-----------TEEEEEEESCTTEEEEEEEEECSSTTC--CEEE
T ss_pred             EEEccCcCccccccccchhhhhhccCCEEEEEECCC-----------CcEeeEEecCCCCCccceeEeeECCCC--CEEE
Confidence            88884                   367999999954           223333332  1223445656  6666  6666


Q ss_pred             Eee------CCCcEEEEEcCCCce--eeee--ec-----------------ccceeEEEECCCCCEEEEEeC-CCcEEEE
Q 012996          194 SAS------EDRTCKVWSLLKGRL--LRNI--VF-----------------PSVIDAIALDPAEHVFYAGSR-DGSIYIA  245 (451)
Q Consensus       194 s~~------~d~~i~iwd~~~~~~--~~~~--~~-----------------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~  245 (451)
                      +++      .+++|.+|....+..  ...+  ..                 ......+.++|++++|+++.. .+.|.+|
T Consensus       269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf  348 (462)
T 2ece_A          269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY  348 (462)
T ss_dssp             EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred             EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            555      567887766544321  1111  00                 245788999999999999875 5789999


Q ss_pred             EccCCCCCCCCCCceeeeeeccC--------------CcceeEEEEec-CCEEEEEc
Q 012996          246 ALNAESPSTSSYGMHIIGSLSDH--------------SKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~-~~~l~s~~  287 (451)
                      |+.....      .+.+..+...              ......+.++| |++|+++.
T Consensus       349 dV~d~~~------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          349 DISNPFK------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECSSTTS------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EecCCCC------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9864321      1333333221              11367899999 98888887

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.21  E-value=4.5e-10  Score=100.47  Aligned_cols=252  Identities=14%  Similarity=0.054  Sum_probs=156.9

Q ss_pred             cCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE
Q 012996           50 SQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL  128 (451)
Q Consensus        50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  128 (451)
                      +..+.+++.+ +.|..|| .+++...... +...+.++...+++. +.+++.+  |..+|. +++.+..+..........
T Consensus        30 ~g~l~v~t~~-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~  103 (330)
T 3hxj_A           30 NGTIYLGSSN-KNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF  103 (330)
T ss_dssp             TSCEECSSTT-TTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred             CCeEEEEcCC-CEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence            3345555555 8899999 7766544332 233456777777776 4444544  888885 676665554333333333


Q ss_pred             EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996          129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (451)
Q Consensus       129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~  208 (451)
                      .+.  +..+..++.++.|..+|.. +           ........+...+.++...+++   .++.++.++.|..+|.. 
T Consensus       104 ~~~--~~~l~v~t~~~~l~~~d~~-g-----------~~~~~~~~~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~~-  165 (330)
T 3hxj_A          104 TIF--EDILYVTSMDGHLYAINTD-G-----------TEKWRFKTKKAIYATPIVSEDG---TIYVGSNDNYLYAINPD-  165 (330)
T ss_dssp             EEE--TTEEEEECTTSEEEEECTT-S-----------CEEEEEECSSCCCSCCEECTTS---CEEEECTTSEEEEECTT-
T ss_pred             eEE--CCEEEEEecCCEEEEEcCC-C-----------CEEEEEcCCCceeeeeEEcCCC---EEEEEcCCCEEEEECCC-
Confidence            343  4457778888999999974 1           1122222233344555554444   46778888999999998 


Q ss_pred             Cceeeeeec-ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEc
Q 012996          209 GRLLRNIVF-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS  287 (451)
Q Consensus       209 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~  287 (451)
                      ++....+.. ...+.++...+++.++ +++  +.+..+| .++.         ...........+.++...+...|..++
T Consensus       166 g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~---------~~~~~~~~~~~~~~~~~~~~g~l~v~t  232 (330)
T 3hxj_A          166 GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT---------EKWNFYAGYWTVTRPAISEDGTIYVTS  232 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC---------EEEEECCSSCCCSCCEECTTSCEEEEE
T ss_pred             CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc---------EEEEEccCCcceeceEECCCCeEEEEc
Confidence            777766653 3456677777777654 444  8899999 4432         233333344667888887744566677


Q ss_pred             CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          288 EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      .++.|..+| .+++.+..+......+..+.+.+++ .|..++.+|.+..++..
T Consensus       233 ~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          233 LDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD  283 (330)
T ss_dssp             TTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred             CCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence            788888888 4677777766555555666666565 56667778778888754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.19  E-value=1.1e-09  Score=98.42  Aligned_cols=247  Identities=9%  Similarity=0.047  Sum_probs=147.7

Q ss_pred             ceEEecceEeeccCcccCCCC-CCccEEEEECCCCceeee-------ecCCCCeeEEEECCCCcEEEEecc-----CCCE
Q 012996           38 GLACVGQRFLASSQLREQPSA-SSGSILYWSWSKPQVEVK-------SLPAEPIKPIAANSHGTYIAGGGQ-----SGDI  104 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~-d~g~i~vw~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i  104 (451)
                      ....++  ++++|+.+++... +++.+.||.+.++.....       ..+...+..++++++++++++-..     ++.|
T Consensus        18 ~p~~va--~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNIT--LTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEE--ECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEE--ECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            455556  8899988877532 214355555544432211       113357899999999987776543     5789


Q ss_pred             EEEEcCCCcceeeecc------ccCCeeEEEEccCC-cEEEEee---CCCcEEEeeCcchhhhhhhhcc-c--c-cceec
Q 012996          105 YMWEVASGRLLKKWHA------HYRAVTCLVFSEDG-SFLISGS---EDGCVRIWSLLTVFEECESQRA-S--H-LYLHS  170 (451)
Q Consensus       105 ~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~-~--~-~~~~~  170 (451)
                      .+||+.+++.+..+..      +...+..+++++++ ..+++..   .++.|.+||+.++......... .  . .....
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999999987766542      22456899999854 4445544   5789999998653211100000 0  0 00000


Q ss_pred             ccC--------------CcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcC---CCc-----e---eeeeecccceeEE
Q 012996          171 FTG--------------HTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLL---KGR-----L---LRNIVFPSVIDAI  224 (451)
Q Consensus       171 ~~~--------------~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~---~~~-----~---~~~~~~~~~i~~~  224 (451)
                      ..+              ....+..+++++++  +.|+.+..++ .+..++..   .+.     .   +...........+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg--~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN--EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTS--CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCC--CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence            000              01246789999987  6777776655 45555432   111     0   1111223356779


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      +++++|.++++...++.|.+||..++.       ...+... .+...+.++++.+ +.++++.+..+.+.+|.
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~~~G~-------~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITSADRA-------YKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEETTTTE-------EEEEEEC-GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             EECCCCCEEEEccCCCeEEEEECCCCC-------EEEEEEC-CceecCCeeEECCCCcEEEEeCccccccccc
Confidence            999999998888889999999983331       1112111 1345688999998 77777777665554444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.17  E-value=5.7e-08  Score=93.03  Aligned_cols=299  Identities=13%  Similarity=0.114  Sum_probs=173.6

Q ss_pred             EeecCCC-CCCeEEEEC-ccCceeeeeecCCCCC-Cc-----e--EEecceEeeccCc----ccCCCCCCccEEEEECCC
Q 012996            5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-----L--ACVGQRFLASSQL----REQPSASSGSILYWSWSK   70 (451)
Q Consensus         5 l~s~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-----v--~~~~~~~~~~~~~----l~~~~~d~g~i~vw~~~~   70 (451)
                      |++++ . ++.|.-+|. .+|+.+.++....... ..     .  ..++  +.|.+..    +++++.+ +.|.-+|..+
T Consensus        65 vyv~~-~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~a--v~p~~g~~~~rV~v~t~d-g~l~AlDa~T  140 (599)
T 1w6s_A           65 MYIHT-SFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA--YWPGDGKTPALILKTQLD-GNVAALNAET  140 (599)
T ss_dssp             EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE--EECCCSSSCCEEEEECTT-SEEEEEETTT
T ss_pred             EEEEe-CCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceE--EEecCCcceeEEEEEcCC-CEEEEEECCC
Confidence            44555 5 789999999 8999998876433210 00     0  1122  4434444    6666666 9999999999


Q ss_pred             CceeeeecCCC-----CeeE-EEECCCCcEEEEec------cCCCEEEEEcCCCcceeeeccccCC--------------
Q 012996           71 PQVEVKSLPAE-----PIKP-IAANSHGTYIAGGG------QSGDIYMWEVASGRLLKKWHAHYRA--------------  124 (451)
Q Consensus        71 ~~~~~~~~~~~-----~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~--------------  124 (451)
                      ++.........     .+.+ -.+ .++ .+++++      .+|.|+-+|..+|+.+..+......              
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            98876643222     1221 111 134 455554      3789999999999988766422110              


Q ss_pred             -----------------------e-eEEEEccCCcEEEEeeCC----------------CcEEEeeCcchhhhhhhhccc
Q 012996          125 -----------------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRAS  164 (451)
Q Consensus       125 -----------------------v-~~~~~~~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~  164 (451)
                                             + ..+++.++...++.+..+                +.|..+|..++...       
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~-------  291 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK-------  291 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-------
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee-------
Confidence                                   1 134566666677766655                36888888663221       


Q ss_pred             ccceecccCC--------cCceeEEEEe-ecCCe-eEEEEeeCCCcEEEEEcCCCceeeeeeccc--------------c
Q 012996          165 HLYLHSFTGH--------TLRITDIVIG-YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------V  220 (451)
Q Consensus       165 ~~~~~~~~~~--------~~~i~~i~~~-~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~  220 (451)
                        .......|        ..++. +... .++.. ..++.++.+|.++++|..+++.+.......              +
T Consensus       292 --W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p  368 (599)
T 1w6s_A          292 --FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP  368 (599)
T ss_dssp             --EEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred             --eEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence              11111212        12221 1111 12211 467778899999999999999887655211              0


Q ss_pred             e--------------------------eEEEECCCCCEEEEEe-------------------------------------
Q 012996          221 I--------------------------DAIALDPAEHVFYAGS-------------------------------------  237 (451)
Q Consensus       221 i--------------------------~~~~~~~~~~~l~~~~-------------------------------------  237 (451)
                      +                          ..++++|+..++++..                                     
T Consensus       369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~  448 (599)
T 1w6s_A          369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN  448 (599)
T ss_dssp             EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred             eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence            1                          2456777766666543                                     


Q ss_pred             --CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-e
Q 012996          238 --RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-V  313 (451)
Q Consensus       238 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v  313 (451)
                        ..|.|..||+.+++.         +-... +..++..-.... +.+++.++.||.++.||..+|+.+.+++...+. .
T Consensus       449 ~~~~G~l~A~D~~tG~~---------~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~  518 (599)
T 1w6s_A          449 YEGLGQIKAYNAITGDY---------KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG  518 (599)
T ss_dssp             TBCCEEEEEECTTTCCE---------EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCCcCeEEEEECCCCCE---------EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence              235666666666532         11111 111111111222 778888999999999999999999998765432 2


Q ss_pred             eEEEEEecCc-eeeecc
Q 012996          314 NNILVVRRPL-YLNLGS  329 (451)
Q Consensus       314 ~~l~~s~~~~-~l~~~s  329 (451)
                      .-+.+..+|+ |+++.+
T Consensus       519 ~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          519 YPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             CCEEEEETTEEEEEEEE
T ss_pred             ccEEEEeCCEEEEEEEc
Confidence            3356667886 454443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.16  E-value=2.4e-07  Score=93.17  Aligned_cols=300  Identities=10%  Similarity=0.140  Sum_probs=186.4

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--------CCCC
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------PAEP   82 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--------~~~~   82 (451)
                      .++.|..||..+++......  ......|.++.  ..+++.+.+.+..  +.+..||..+........        ....
T Consensus       191 ~~~Gl~~~~~~~~~~~~~~~--~~~~~~i~~i~--~d~~g~lwigt~~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (795)
T 4a2l_A          191 STDGLYTYSITQKTFEKVIP--ILGTKQIQAIL--QQSPTRIWVATEG--AGLFLINPKTKEIKNYLHSPSNPKSISSNY  264 (795)
T ss_dssp             SSSCEEEEETTTCCEEECC------CCCEEEEE--EEETTEEEEEEBS--SCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred             CCCCEEEEeCCCCeEEEecC--CCCCCeeEEEE--EcCCCCEEEEECC--CCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence            34568889987765432211  11234566665  6666766554433  458889987765443221        2357


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  155 (451)
                      |.++...++|.+.+. +.+ -|.+||..++.......       -....|.++...++|. |..|+.++-|..|+..+..
T Consensus       265 i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~  341 (795)
T 4a2l_A          265 IRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR  341 (795)
T ss_dssp             EEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred             EEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence            999999988886554 445 58999987665433221       1235799999998887 5667777789999874311


Q ss_pred             hhhhhhcccccceec----ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---------ccccee
Q 012996          156 EECESQRASHLYLHS----FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVID  222 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~  222 (451)
                               ......    -......|.++....++   .|..|+.++-|..||..+++......         ....|.
T Consensus       342 ---------~~~~~~~~~~~~l~~~~V~~i~~d~~g---~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          342 ---------FKNIRNIPYKNSLSDNVVSCIVEDKDK---NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             ---------SEEECCCTTSSSCSCSSEEEEEECTTS---CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred             ---------ceEEcCCCCCCCCCCCeeEEEEECCCC---CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence                     100000    01124468888776654   56778888789999987765433221         135688


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee--eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +++.++++..|.+|+.++-|..||..++..       .....  -..+...|.++...+ +.+.+ |+.+ -|.+||..+
T Consensus       410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-------~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~  480 (795)
T 4a2l_A          410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQV-------ENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQ  480 (795)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEETTTCCE-------EEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTT
T ss_pred             EEEEcCCCCEEEEEeCcCceeEEeCCCCcE-------EEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCC
Confidence            999888888677888877899999876531       11100  002345789998887 65444 4444 488899887


Q ss_pred             CceEEEee------cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          300 HNIVRMFR------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       300 ~~~~~~~~------~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      ++......      .+...|.++...++|...+...  +.+..|+..+.
T Consensus       481 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~  527 (795)
T 4a2l_A          481 RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL  527 (795)
T ss_dssp             TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred             CeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence            65433221      1235789999999887666554  45666766543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.16  E-value=3.1e-08  Score=95.04  Aligned_cols=303  Identities=15%  Similarity=0.132  Sum_probs=173.3

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEE----ecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC-----Ce
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLAC----VGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE-----PI   83 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~-----~v   83 (451)
                      +.|..+|..+|+.+.++...........|    -.  ....+..+++++.+ +.|.-+|..+++.........     .+
T Consensus        78 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g--~a~~~~~v~~~t~d-g~l~AlD~~TG~~~W~~~~~~~~~~~~~  154 (582)
T 1flg_A           78 SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRG--AAIYGDKVFFGTLD-ASVVALNKNTGKVVWKKKFADHGAGYTM  154 (582)
T ss_dssp             TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCC--CEEETTEEEEEETT-TEEEEEESSSCCEEEEEECSCGGGTCBC
T ss_pred             CCEEEEECCCCcEEEEEcCCCCcccccccccCCCc--cEEECCEEEEEeCC-CEEEEEECCCCCEEeeecCCCCCcCccc
Confidence            34999999999999888654322111000    00  11234455555566 899999999998876543211     11


Q ss_pred             e-E-EEEC--CCCc-EEEEec------cCCCEEEEEcCCCcceeeeccccCC----------------------------
Q 012996           84 K-P-IAAN--SHGT-YIAGGG------QSGDIYMWEVASGRLLKKWHAHYRA----------------------------  124 (451)
Q Consensus        84 ~-~-~~~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~----------------------------  124 (451)
                      . . +...  .+|+ .+++++      .+|.|+-+|..+|+.+.........                            
T Consensus       155 ~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~  234 (582)
T 1flg_A          155 TGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPT  234 (582)
T ss_dssp             CSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTT
T ss_pred             ccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccc
Confidence            1 1 1111  1233 566654      3789999999999887655321100                            


Q ss_pred             ------------e-eEEEEccCCcEEEEeeC--------------------C----CcEEEeeCcchhhhhhhhcccccc
Q 012996          125 ------------V-TCLVFSEDGSFLISGSE--------------------D----GCVRIWSLLTVFEECESQRASHLY  167 (451)
Q Consensus       125 ------------v-~~~~~~~~~~~l~s~~~--------------------d----g~i~vwd~~~~~~~~~~~~~~~~~  167 (451)
                                  + ..+++.|+...++.+..                    |    +.|..+|..++....         
T Consensus       235 g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W---------  305 (582)
T 1flg_A          235 GKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW---------  305 (582)
T ss_dssp             SBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE---------
T ss_pred             ccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE---------
Confidence                        0 13456666666666553                    2    578888886643221         


Q ss_pred             eecccCCcC----cee-EEEEe---ecCCe-eEEEEeeCCCcEEEEEcCCCceeeeeecccce-----------------
Q 012996          168 LHSFTGHTL----RIT-DIVIG---YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI-----------------  221 (451)
Q Consensus       168 ~~~~~~~~~----~i~-~i~~~---~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i-----------------  221 (451)
                      ......|..    .+. .+.+.   .++.. ..++.++.+|.++++|..+++.+..+.....+                 
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~  385 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE  385 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred             EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence            111111210    001 11122   13311 37888999999999999999988766532100                 


Q ss_pred             -----------------------------eEEEECCCCCEEEEEeC---------------------------------C
Q 012996          222 -----------------------------DAIALDPAEHVFYAGSR---------------------------------D  239 (451)
Q Consensus       222 -----------------------------~~~~~~~~~~~l~~~~~---------------------------------d  239 (451)
                                                   ..++++|+...+++...                                 +
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~  465 (582)
T 1flg_A          386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV  465 (582)
T ss_dssp             TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred             ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence                                         13466776666665432                                 4


Q ss_pred             CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe-eEEE
Q 012996          240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNIL  317 (451)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~  317 (451)
                      |.|..||+.+++.         +-....+ .++..-.... +.+++.|+.||.++.||.++|+.+.+++...+.+ .-+.
T Consensus       466 G~l~A~D~~tG~~---------~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~  535 (582)
T 1flg_A          466 GSLRAMDPVSGKV---------VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPIT  535 (582)
T ss_dssp             EEEEEECTTTCCE---------EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             ceEEEEECCCCCE---------EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceE
Confidence            6788888877642         1111111 1222211222 7788889999999999999999999988754422 2367


Q ss_pred             EEecCc-eeeeccC-CCCcccc
Q 012996          318 VVRRPL-YLNLGSF-SNPHTSS  337 (451)
Q Consensus       318 ~s~~~~-~l~~~s~-d~~i~iw  337 (451)
                      |..+|+ |+++.+. -|.+-+|
T Consensus       536 y~~~G~qYv~~~~G~gg~~~~~  557 (582)
T 1flg_A          536 WEQDGEQYLGVTVGYGGAVPLW  557 (582)
T ss_dssp             EEETTEEEEEEEECCCSHHHHH
T ss_pred             EEECCEEEEEEEccCCCccccc
Confidence            778886 4444333 3444445

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.09  E-value=8.5e-08  Score=85.28  Aligned_cols=237  Identities=10%  Similarity=0.014  Sum_probs=149.3

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec--------------------cccCCeeEEEEcc-CCcEEEE
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH--------------------AHYRAVTCLVFSE-DGSFLIS  139 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l~s  139 (451)
                      ....+++++++++++.++..++.|..|+..++... .+.                    .....+.++++.+ +++ |+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            35678899999997778888899999987665432 221                    0123578899997 665 555


Q ss_pred             eeCCCcEEEeeCcchhhhhhhhccccccee-cccC-CcCceeEEEEee-cCCeeEEEEeeC-----------------CC
Q 012996          140 GSEDGCVRIWSLLTVFEECESQRASHLYLH-SFTG-HTLRITDIVIGY-GGVSATIVSASE-----------------DR  199 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~i~~~~-~~~~~~l~s~~~-----------------d~  199 (451)
                      +...+.|..+|..++.         ...+. ...+ .......+++.+ ++  ++.++...                 ++
T Consensus        97 ~d~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGH---------ATQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             EETTTEEEEECTTCEE---------CEEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             EECCCCEEEEeCCCCE---------EEEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccCCCc
Confidence            5444558888874321         01111 1111 123467788887 76  55555322                 36


Q ss_pred             cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996          200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       200 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                      .|..||..+++.............++++|+++.|+++ +..+.|+.|++......    .......+   .+ ...+++.
T Consensus       166 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~~---~g-P~gi~~d  237 (322)
T 2fp8_A          166 RLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVKI---PN-PGNIKRN  237 (322)
T ss_dssp             EEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEEC---SS-EEEEEEC
T ss_pred             eEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEeC---CC-CCCeEEC
Confidence            7889998776643333333456679999999977766 55689999998753210    01122221   23 7789999


Q ss_pred             c-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCC----CCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          279 T-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAK----GPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       279 ~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      + |.+.++...          .+.|..+|. .++.+..+....    ..++.+++ .++.++++....+.|..++..
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            9 876666544          467889986 578887776543    35677776 466666666677778777754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.08  E-value=9.1e-09  Score=96.07  Aligned_cols=237  Identities=9%  Similarity=-0.010  Sum_probs=152.6

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceE-e-eccCcccCC-----------------CCCCccEEE
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-L-ASSQLREQP-----------------SASSGSILY   65 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~~~-----------------~~d~g~i~v   65 (451)
                      +++.. .++.|.+-|+.+.++...+....+  .....++  + . |+++++.++                 ...++.+.+
T Consensus       105 fVnd~-~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~--~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          105 FMNDK-ANTRVARVRCDVMKCDAILEIPNA--KGIHGLR--PQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEET-TTTEEEEEETTTTEEEEEEECSSC--CSEEEEE--ECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             EEEcC-CCCEEEEEECCCceEeeEEeCCCC--CCCccee--eeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            44555 778899999999998874432111  1222333  3 2 555555555                 344579999


Q ss_pred             EECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC--------------------------------------CEEEE
Q 012996           66 WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--------------------------------------DIYMW  107 (451)
Q Consensus        66 w~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------~i~iw  107 (451)
                      .|.++.+......-.+....++++|+|+++++.+.+.                                      .|.|.
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            9999988776654334668889999999998887553                                      46777


Q ss_pred             EcCC--Ccc-eeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhh-cccccceecccCCcCceeEEE
Q 012996          108 EVAS--GRL-LKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ-RASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       108 d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      |..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+........ ........... -......++
T Consensus       260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a  337 (595)
T 1fwx_A          260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA  337 (595)
T ss_dssp             ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred             eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence            7776  444 344432 23557899999999877655 57899999997642211000 01111222222 234567889


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCC----------Cceeeeeecccce------eEEEECCCCCEEEEEeCC--CcE--
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVI------DAIALDPAEHVFYAGSRD--GSI--  242 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~d--g~i--  242 (451)
                      |+++|  ...++.-.|+.|..||+.+          .+.+..+......      ..+.++|+|++|+++..-  .++  
T Consensus       338 F~~dG--~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          338 FDGRG--NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             ECTTS--EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             ECCCC--eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            99988  6777888999999999977          4556666533222      123458999999998642  223  


Q ss_pred             ---------EEEEccCC
Q 012996          243 ---------YIAALNAE  250 (451)
Q Consensus       243 ---------~i~d~~~~  250 (451)
                               .++|+...
T Consensus       416 ~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          416 VGPLKPENDQLIDISGD  432 (595)
T ss_dssp             CCSSCCEEEEEEECSSS
T ss_pred             CCCCCCCcceEEEcCCC
Confidence                     77888544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=3e-08  Score=83.92  Aligned_cols=206  Identities=12%  Similarity=0.092  Sum_probs=134.5

Q ss_pred             CceeeeeecCCCCCCceEEecceEeeccCcccCCCC-CCccEEEEECCCCceeeeecCCCCe--eEEEECCCCcEE-EEe
Q 012996           23 GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA-SSGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYI-AGG   98 (451)
Q Consensus        23 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~g~i~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l-~~~   98 (451)
                      .+.+.++.. .. ......+.  |++++.+.++.+. .++.|.+.|..+++...........  ..+++.  +..| ++.
T Consensus         9 ~~vv~~~p~-~~-~~f~~Gl~--~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t   82 (266)
T 2iwa_A            9 VEVLNEFPH-DP-YAFTQGLV--YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVV   82 (266)
T ss_dssp             EEEEEEEEC-CT-TCCEEEEE--ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred             ceEEEEEEC-CC-CCCcccEE--EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence            345555532 21 11234445  8888766655543 2389999999999877654332322  344554  4444 444


Q ss_pred             ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC--C--
Q 012996           99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--H--  174 (451)
Q Consensus        99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~--  174 (451)
                      -.++.+.++|..+.+.+.++......  ...+++|++.++++..++.|.++|..+.           .....+.-  +  
T Consensus        83 ~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~-----------~v~~~I~Vg~~~~  149 (266)
T 2iwa_A           83 WLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF-----------KLIKKHNVKYNGH  149 (266)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC-----------CEEEEEECEETTE
T ss_pred             ecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC-----------cEEEEEEECCCCc
Confidence            56789999999999998888533111  2335567777777777889999998652           22222221  1  


Q ss_pred             -cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--------------cceeEEEECCCCCEEEE-EeC
Q 012996          175 -TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYA-GSR  238 (451)
Q Consensus       175 -~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~-~~~  238 (451)
                       -..++.+.+. ++  ...+....++.|.+.|..+++.+..+...              ...+.++|+|+++.+++ +..
T Consensus       150 p~~~~nele~~-dg--~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          150 RVIRLNELEYI-NG--EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             ECCCEEEEEEE-TT--EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             ccccceeEEEE-CC--EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence             1235677776 54  55555556889999999999999988743              24689999998876555 556


Q ss_pred             CCcEEEEEccCC
Q 012996          239 DGSIYIAALNAE  250 (451)
Q Consensus       239 dg~i~i~d~~~~  250 (451)
                      .+.++..++...
T Consensus       227 ~~~v~~i~l~~~  238 (266)
T 2iwa_A          227 WPKLFEIKLHLV  238 (266)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEecc
Confidence            788999888764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.06  E-value=2.2e-07  Score=80.13  Aligned_cols=239  Identities=10%  Similarity=-0.048  Sum_probs=140.8

Q ss_pred             CCeEEEECccCcee-----eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEE
Q 012996           13 TGIGCWDLESGAEQ-----LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPI   86 (451)
Q Consensus        13 g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~   86 (451)
                      +.|+.+|+......     ..+..   +......++  +.+++..+..+...++.|..++.+......... .......+
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~---~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i   84 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHI---PAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI   84 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEE---EEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred             CeEEEEEecCcccccccceeeecC---CCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEE
Confidence            47899998754321     01111   112345566  888776666655544899999988665433222 23578999


Q ss_pred             EECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhc
Q 012996           87 AANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        87 ~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~  162 (451)
                      +++|++..| ++-...+.|.++++..................++++|++..|+.+..   .+.|..+++...        
T Consensus        85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--------  156 (267)
T 1npe_A           85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--------  156 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--------
T ss_pred             EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--------
Confidence            999975544 45455678999998643322222222246789999996555555443   367888877321        


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-CCCc
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGS  241 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  241 (451)
                       ....+  .........++++++++. .++++-...+.|..+|+........+........++..  +..++++. ..+.
T Consensus       157 -~~~~~--~~~~~~~P~gia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~  230 (267)
T 1npe_A          157 -NRRIL--AQDNLGLPNGLTFDAFSS-QLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS  230 (267)
T ss_dssp             -CCEEE--ECTTCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE
T ss_pred             -CcEEE--EECCCCCCcEEEEcCCCC-EEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe
Confidence             11111  112234567899988652 45556666789999998754433333322334566654  45555554 5689


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCC-cceeEEEEec
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST  279 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~  279 (451)
                      |..+|..++         +.+..+.... .....+++.|
T Consensus       231 v~~~d~~~g---------~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          231 VIAMDLAIS---------KEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             EEEEETTTT---------EEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEEeCCCC---------CceEEEccccccccceeeecC
Confidence            999998775         3344443222 2466777776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.02  E-value=8.5e-08  Score=81.20  Aligned_cols=203  Identities=11%  Similarity=0.065  Sum_probs=134.3

Q ss_pred             cceeeeccccC--CeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecC
Q 012996          113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGG  187 (451)
Q Consensus       113 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~  187 (451)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|.++|+.++           ..+..+.- .......+++.  +
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-----------~v~~~i~l~~~~fgeGi~~~--g   75 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG-----------KVENIHKMDDSYFGEGLTLL--N   75 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC-----------CEEEEEECCTTCCEEEEEEE--T
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC-----------CEEEEEecCCCcceEEEEEe--C
Confidence            3445553 443  3579999998765555543  579999999663           22332221 11122244443  3


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCceeeeeecc-cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFP-SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                      . .+.++.-.++.+.++|..+.+.+..+..+ ..  ...++++++.++++..++.|.++|..+..         .+..+.
T Consensus        76 ~-~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~---------v~~~I~  143 (266)
T 2iwa_A           76 E-KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFK---------LIKKHN  143 (266)
T ss_dssp             T-EEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCC---------EEEEEE
T ss_pred             C-EEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCc---------EEEEEE
Confidence            2 55566667899999999999999988754 32  23455678888888888999999998753         222222


Q ss_pred             c--C---CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCC-------------CCeeEEEEEecCcee-ee
Q 012996          267 D--H---SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK-------------GPVNNILVVRRPLYL-NL  327 (451)
Q Consensus       267 ~--~---~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~l-~~  327 (451)
                      -  +   -..++.+.|..+...+....++.|.+.|..+++.+..+....             .....|+|+|+++.| ++
T Consensus       144 Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence            1  1   123667887755455555568899999999999999987421             256899999998655 56


Q ss_pred             ccCCCCccccccCC
Q 012996          328 GSFSNPHTSSRRHG  341 (451)
Q Consensus       328 ~s~d~~i~iw~~~~  341 (451)
                      +...+.+..-++..
T Consensus       224 gk~~~~v~~i~l~~  237 (266)
T 2iwa_A          224 GKLWPKLFEIKLHL  237 (266)
T ss_dssp             ETTCSEEEEEEEEE
T ss_pred             CCCCCeEEEEEEec
Confidence            66677777766654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.01  E-value=2.6e-06  Score=85.63  Aligned_cols=297  Identities=14%  Similarity=0.096  Sum_probs=181.6

Q ss_pred             CCCeEEEECccCceeeeeecC----CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--------cC
Q 012996           12 DTGIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------LP   79 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--------~~   79 (451)
                      ++.|.+||..+++........    .-....|.++.  ..++|.+.+.+ .  +.|.+|+..+.......        ..
T Consensus       234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~  308 (795)
T 4a2l_A          234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLA--MDSQNRLWIGT-F--NDLNIYHEGTDSFASYSSNPVENGSLS  308 (795)
T ss_dssp             SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEE--ECTTSCEEEEE-S--SCEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred             CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEE--EcCCCCEEEEe-C--ChhheEcCCCCeEEEEecCCCCCCCCC
Confidence            345889998766543221111    11235677776  66667655433 3  35888998776654332        12


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ...|.++...++|.+- .|+.++-|..|+..++.......      -....|.++...++|. |..|+.++-|..|+..+
T Consensus       309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred             CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence            3579999999988754 56666779999876554322111      1245689999888876 55677777899999754


Q ss_pred             hhhhhhhhcccccceecc------cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----ccccee
Q 012996          154 VFEECESQRASHLYLHSF------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVID  222 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~i~  222 (451)
                      .         ........      ......|.+++...++  ..|..|+.++-|.+||..+++......     ....|.
T Consensus       387 ~---------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~  455 (795)
T 4a2l_A          387 Q---------RFTSYTLQEDESARGIGSNNIKAVYVDEKK--SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY  455 (795)
T ss_dssp             C---------CEEEECCC------CCSCSCEEEEEEETTT--TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred             C---------cEEEEecCCCCcccCCCCccEEEEEEcCCC--CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence            1         11000000      0123568888876665  547778887789999988776433221     235688


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee----ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      ++...+++.+.+ |+. +-+.+||..+...       ......    .-....|.++...+ +.+.+ |+. +-|..||.
T Consensus       456 ~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~  524 (795)
T 4a2l_A          456 AILPDGEGNLWL-GTL-SALVRFNPEQRSF-------TTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQ  524 (795)
T ss_dssp             EEEECSSSCEEE-EES-SCEEEEETTTTEE-------EECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEE
T ss_pred             EEEECCCCCEEE-Eec-CceeEEeCCCCeE-------EEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeC
Confidence            999888877554 444 4588898766421       111100    11236788998888 55544 444 45888998


Q ss_pred             CCCceEEEee-------cCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          298 ITHNIVRMFR-------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       298 ~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .+++.  .+.       .+...|.++..+++|...+++. . .+..|+..+
T Consensus       525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~  571 (795)
T 4a2l_A          525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKD  571 (795)
T ss_dssp             ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTT
T ss_pred             CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCC
Confidence            77655  222       2345789999999887655443 3 455566543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.01  E-value=1.9e-07  Score=78.01  Aligned_cols=190  Identities=12%  Similarity=0.126  Sum_probs=125.9

Q ss_pred             ceeeeccccCC--eeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          114 LLKKWHAHYRA--VTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       114 ~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                      .+.++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+.++.           .+...... .......+.+.++ 
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk-----------v~~~~~l~-~~~FgeGit~~g~-   97 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK-----------TLQQIELG-KRYFGEGISDWKD-   97 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC-----------EEEEEECC-TTCCEEEEEEETT-
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc-----------EEEEEecC-CccceeEEEEeCC-
Confidence            34555 35443  3788998 677777777776  89999996632           22222211 2222222333342 


Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--  267 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--  267 (451)
                      .+.+..-.++.+.+||..+.+.+.++..+..-..++  ++++.|+.+..++.|.++|..+..         .+..+.-  
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~---------v~~~I~V~~  166 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLT---------PVRTITVTA  166 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCS---------EEEEEECEE
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCe---------EEEEEEecc
Confidence            455555568999999999999999998655444444  567888887778889999998764         2222221  


Q ss_pred             CC---cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC------------CCCeeEEEEEecCceeeecc
Q 012996          268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA------------KGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       268 ~~---~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~l~~~s  329 (451)
                      ..   ..++.+.|..+...+..-.++.|.+.|..+++.+..+...            ....+.|+|+|+++.|..++
T Consensus       167 ~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          167 HGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            12   3345577765655555556889999999999999988752            12468899999887766554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=9e-08  Score=93.71  Aligned_cols=243  Identities=10%  Similarity=0.135  Sum_probs=149.2

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeeec
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~~   78 (451)
                      .|+.++ .|+.|..+|..+|+.+.++...... ...+....  ...++..++..+.    .+|.|..+|..+++......
T Consensus       119 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          119 KVYVGT-LDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP--RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEc-CCCEEEEEECCCCCEeeeeccCCCCCcceecCCC--EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            456667 7999999999999999887653211 11121111  2224444433322    13899999999998776543


Q ss_pred             C--CC------------------------------CeeEEEECCCCcEEEEeccCC-------------------CEEEE
Q 012996           79 P--AE------------------------------PIKPIAANSHGTYIAGGGQSG-------------------DIYMW  107 (451)
Q Consensus        79 ~--~~------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iw  107 (451)
                      .  ..                              ....+++.|++..++.++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            1  11                              112468888888888887665                   39999


Q ss_pred             EcCCCcceeeecc--cc-------CCeeEEEEccCCc---EEEEeeCCCcEEEeeCcchhhhhhhhccc-----------
Q 012996          108 EVASGRLLKKWHA--HY-------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRAS-----------  164 (451)
Q Consensus       108 d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------  164 (451)
                      |..+|+.+..++.  |.       .+.....+..+|+   .++.++.+|.+.++|..++..........           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999998877753  22       2232233334665   68899999999999987764321100000           


Q ss_pred             cccee------------cccCCcC--ceeEEEEeecCCeeEEEE------------------------------------
Q 012996          165 HLYLH------------SFTGHTL--RITDIVIGYGGVSATIVS------------------------------------  194 (451)
Q Consensus       165 ~~~~~------------~~~~~~~--~i~~i~~~~~~~~~~l~s------------------------------------  194 (451)
                      ..++.            .+.+..+  .-..++++++.  .+++.                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT--GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCC--CEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence            00000            0000000  00113444443  22222                                    


Q ss_pred             eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      ...+|.|..||+.+++.+.............+...+.++++++.||.++.||..+++
T Consensus       434 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          434 AVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             GGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            123488999999999998888765555544555578899999999999999999874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.94  E-value=2.5e-07  Score=77.29  Aligned_cols=189  Identities=14%  Similarity=0.126  Sum_probs=126.2

Q ss_pred             cceeeeccccC--CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       113 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      +.+.++ .|..  ....+.|+ ++.++.+.+.+|.|+++|+.++.           .+..+......-..+++  .+. .
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-----------v~~~~l~~~~FgeGit~--~g~-~  107 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-----------PVWMERLGNIFAEGLAS--DGE-R  107 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSS-----------CSEEEECTTCCEEEEEE--CSS-C
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCc-----------EEeEECCCCcceeEEEE--eCC-E
Confidence            344455 3443  34688887 46777788888999999997632           22222111111123444  332 5


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec--cC
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DH  268 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~  268 (451)
                      +.+..-.++.+.+||..+.+.+.++..+..-..++  ++++.|+++..++.|+++|..+.+         .+.++.  .+
T Consensus       108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---------v~~~I~V~~~  176 (268)
T 3nok_A          108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---------LVGAVQVKLR  176 (268)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCC---------EEEEEECEET
T ss_pred             EEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---------EEEEEEeCCC
Confidence            55566678999999999999999998655444555  567888888889999999988864         222222  12


Q ss_pred             C---cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC-------------CCCeeEEEEEecCceeeec
Q 012996          269 S---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       269 ~---~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~  328 (451)
                      .   ..++.+.|..|...+..-.++.|.+.|..+++.+..+...             ..-.+.|+++|+++.|...
T Consensus       177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            2   2446677776655555556889999999999999988742             1356889999977665544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.93  E-value=3.8e-07  Score=87.40  Aligned_cols=241  Identities=11%  Similarity=0.025  Sum_probs=141.7

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC-----CCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA-----SSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~-----d~g~i~vw~~~~~~~~~~~   77 (451)
                      .|+.++ .|+.|..+|..+|+.+.++...... ...+.+..  ...++..++....     + +.|..+|..+++...+.
T Consensus       117 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v~~g~v~vg~~~~~~~~~-g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          117 QIVKKQ-ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FVAKDTVLMGCSGAELGVR-GAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEEECBCGGGTCC-CEEEEEETTTCCEEEEE
T ss_pred             EEEEEe-CCCEEEEEECCCCCEEEEecCCCCCccceeccCC--EEECCEEEEEecCCccCCC-CEEEEEECCCCcEEEEE
Confidence            355666 7899999999999998877543210 01122111  2224444333322     4 89999999998877654


Q ss_pred             cCCCCe---------------------------------------eEEEECCCCcEEEEeccC----------------C
Q 012996           78 LPAEPI---------------------------------------KPIAANSHGTYIAGGGQS----------------G  102 (451)
Q Consensus        78 ~~~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------g  102 (451)
                      ....+.                                       ..+++.++...+..+..+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            322111                                       235666766666665532                2


Q ss_pred             CEEEEEcCCCcceeeecc--cc--------CCeeEEEEccCCc---EEEEeeCCCcEEEeeCcchhhhhhhhccc-----
Q 012996          103 DIYMWEVASGRLLKKWHA--HY--------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRAS-----  164 (451)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----  164 (451)
                      .|..+|..+|+.+..++.  |.        .++ -+....+|+   .++.++.+|.+.++|..++..........     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            599999999998877643  21        222 122224674   57788889999999987754322111000     


Q ss_pred             -------cccee--------------cccCCcC--ceeEEEEeecCCeeEEEEee-------------------------
Q 012996          165 -------HLYLH--------------SFTGHTL--RITDIVIGYGGVSATIVSAS-------------------------  196 (451)
Q Consensus       165 -------~~~~~--------------~~~~~~~--~i~~i~~~~~~~~~~l~s~~-------------------------  196 (451)
                             ..++.              ...+..+  .-..++++|+.  .+++..+                         
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC--CEEEEEchhccccccccccccccCCccccccc
Confidence                   00000              0000000  00123455443  3333322                         


Q ss_pred             ------------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          197 ------------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       197 ------------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                                  .+|.|..||+.+++.+..+.....+....+...+..+++++.||.++.+|..+++
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence                        3578999999999998888765544433333356778889999999999999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.92  E-value=1.2e-06  Score=77.12  Aligned_cols=227  Identities=9%  Similarity=0.014  Sum_probs=135.5

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC  158 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~  158 (451)
                      .....++|+++++++++-..++.|..||... .....+. ....+..+++.++++++++.....  .|..++..++.   
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~---  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT---  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---
Confidence            5678999999999777766788999999754 3333332 235688999999998666554332  36666653321   


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeee-------e---cccceeEEEEC
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-------V---FPSVIDAIALD  227 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-------~---~~~~i~~~~~~  227 (451)
                            ...+.... .......++..+++  ..+++-..++.|+.+|...+.. +...       .   .-...+.+  +
T Consensus       107 ------~~~~~~~~-~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A          107 ------VETLLTLP-DAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             ------EEEEEECT-TCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             ------EEEEEeCC-CccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence                  11111111 11223344443333  4455554688999999865421 1100       0   01123444  7


Q ss_pred             CCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE-
Q 012996          228 PAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-  304 (451)
Q Consensus       228 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~-  304 (451)
                      |+++.|+++. ..+.|+.|++.......   .......    ......+++++ |+++++....+.|.++|.. ++... 
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~---~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~  247 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPG---EPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII  247 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBC---CCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCC---ccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence            7887776654 56789999987521000   0111111    13467789999 8877777778899999975 65532 


Q ss_pred             -EeecCCCCeeEEEEE---ecCceeeeccCC
Q 012996          305 -MFRLAKGPVNNILVV---RRPLYLNLGSFS  331 (451)
Q Consensus       305 -~~~~~~~~v~~l~~s---~~~~~l~~~s~d  331 (451)
                       .+.......++++|.   |++..|..++..
T Consensus       248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eecccccCCceEEEEecccCCCCEEEEECCC
Confidence             344334568999999   887777665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.92  E-value=1.6e-07  Score=78.46  Aligned_cols=180  Identities=12%  Similarity=0.111  Sum_probs=120.0

Q ss_pred             EEecceEeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceee
Q 012996           40 ACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKK  117 (451)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~  117 (451)
                      ..+.  |+ ++.+..++|.+ ...|+++|+.+++.................++++.|... -.++.+.+||..+.+.+.+
T Consensus        46 qGL~--~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           46 EGFF--YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEE--EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             ceEE--EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4444  77 66666666654 139999999999987665544555444333445454443 4578999999999999998


Q ss_pred             eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC----Cc-CceeEEEEeecCCeeEE
Q 012996          118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG----HT-LRITDIVIGYGGVSATI  192 (451)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~i~~~~~~~~~~l  192 (451)
                      +...... ..++  +|++.|+.+..++.|.++|..+.           ..+..+.-    .. ..++.+.+. ++  ...
T Consensus       123 i~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~-----------~v~~~I~V~~~g~~~~~lNELe~~-~G--~ly  185 (262)
T 3nol_A          123 FNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESL-----------TPVRTITVTAHGEELPELNELEWV-DG--EIF  185 (262)
T ss_dssp             EECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTC-----------SEEEEEECEETTEECCCEEEEEEE-TT--EEE
T ss_pred             EECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCC-----------eEEEEEEeccCCccccccceeEEE-CC--EEE
Confidence            8643221 3333  56777777666788999998652           22222211    11 234456665 44  555


Q ss_pred             EEeeCCCcEEEEEcCCCceeeeeecc-------------cceeEEEECCCCCEEEEEeCC
Q 012996          193 VSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRD  239 (451)
Q Consensus       193 ~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~d  239 (451)
                      +..-.+..|.+.|..+++.+..+...             ...+.++++|+++.|++.+..
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            55557889999999999999888742             245889999988888777653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.91  E-value=8.3e-06  Score=72.00  Aligned_cols=239  Identities=11%  Similarity=-0.033  Sum_probs=145.2

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCC----CcceeeeccccCCeeEEEEccC-C
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSED-G  134 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~  134 (451)
                      ..|+..++.+............+..++|++.+. ++++-..++.|..+++..    ......+.........+++.+. +
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            578888988776554444556788999998655 445555568899999875    2222223323345678999874 4


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceee
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR  213 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~  213 (451)
                      +++++-...+.|.++++...           ..............++++.|.+. .++++.... +.|...++. +....
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~-----------~~~~~~~~~~~~P~~iavdp~~g-~ly~~d~~~~~~I~~~~~d-G~~~~  156 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGV-----------KRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLN-GVDIY  156 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSS-----------SEEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETT-SCCEE
T ss_pred             eEEEEECCCCEEEEEeCCCC-----------ceEEEEECCCCCcceEEeCCCCC-EEEEEccCCCCeEEEEcCC-CCCeE
Confidence            44555566788999987431           11111122234567889987552 344444333 688888875 33333


Q ss_pred             eee--cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996          214 NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (451)
Q Consensus       214 ~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg  290 (451)
                      .+.  .-.....++++|++..|+.+. ..+.|..+|+.....       ..+............+++..+.++++-...+
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~~~~~~~~~~P~giav~~~~ly~~d~~~~  229 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINE  229 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EEEeecCCccCCcEEEEEECCEEEEEECCCC
Confidence            332  234578999999877776665 556899999875321       2222221223445778876566667777788


Q ss_pred             cEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996          291 MVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (451)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (451)
                      .|..++..+++.+..+.........|...
T Consensus       230 ~V~~~~~~~g~~~~~i~~~~~~p~~i~v~  258 (316)
T 1ijq_A          230 AIFSANRLTGSDVNLLAENLLSPEDMVLF  258 (316)
T ss_dssp             EEEEEETTTCCCCEEEECSCSCCCCEEEE
T ss_pred             eEEEEeCCCCcceEEEecCCCCceEEEEe
Confidence            99999988887777765432333444433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.89  E-value=3.2e-06  Score=76.91  Aligned_cols=240  Identities=8%  Similarity=-0.098  Sum_probs=150.8

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI  138 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~  138 (451)
                      ..|+..++..............+..++|++.+. ++++-...+.|..+++........+.........+++.+. +.+++
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            567788877666555444556788999997554 4455456778999998765543333333345578899874 44455


Q ss_pred             EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceeeeee-
Q 012996          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV-  216 (451)
Q Consensus       139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~-  216 (451)
                      +-...+.|.+.++..           ......+........++++.|.+. .++++-... +.|..+++.......... 
T Consensus       176 ~d~~~~~I~~~~~dg-----------~~~~~l~~~~l~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~  243 (386)
T 3v65_B          176 TDSGTSRIEVANLDG-----------AHRKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT  243 (386)
T ss_dssp             EETTTTEEEECBTTS-----------CSCEEEECSSCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EcCCCCeEEEEeCCC-----------CceEEeecCCCCCCcEEEEEcCCC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            555667888888743           111111222334568899987652 444444444 788888875433222222 


Q ss_pred             cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEE
Q 012996          217 FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW  295 (451)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iw  295 (451)
                      .-.....++++|++..|+.+. ..+.|..+|+.....         ...+.........|++..+.++++-...+.|..+
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~  314 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA  314 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEEECCCCCceEEEEECCEEEEeeCCCCeEEEE
Confidence            233578899998777666654 556899999875321         1112223345677888547677777778889999


Q ss_pred             eCCCCceEEEeecCCCCeeEEEEEec
Q 012996          296 DPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      +..+++.+..+.........|++...
T Consensus       315 ~~~~G~~~~~i~~~~~~p~gi~v~~~  340 (386)
T 3v65_B          315 NKFTGKNQEIIRNKLHFPMDIHTLHP  340 (386)
T ss_dssp             ETTTCCSCEEEECSCSCCCCEEEESG
T ss_pred             ECCCCcceEEEccCCCCCceEEEEch
Confidence            98788887777655455666666543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.89  E-value=1.8e-06  Score=71.55  Aligned_cols=190  Identities=17%  Similarity=0.125  Sum_probs=124.9

Q ss_pred             ceeeecccc--CCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          114 LLKKWHAHY--RAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       114 ~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                      .+.++ .|.  .....+.|++ +.++.+.+.+|  .|+.+|+.++           ..+....... ......+...+. 
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg-----------kv~~~~~l~~-~~fgeGi~~~~~-   75 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG-----------RILQRAEVPP-PYFGAGIVAWRD-   75 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC-----------CEEEEEECCT-TCCEEEEEEETT-
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCC-----------CEEEEEeCCC-CcceeEEEEeCC-
Confidence            34455 454  3456899986 56666666654  8999999663           2222222111 122222222332 


Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--  267 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--  267 (451)
                      .+....-.++.+.+||..+.+.+.++..+..-..++  +++..|+++..++.|.++|..+..         .+.++.-  
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~---------~~~~I~V~~  144 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ---------QVGSIKVTA  144 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCC---------EEEEEECEE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCe---------EEEEEEEcc
Confidence            556666678999999999999999998665555555  467788888778999999998864         2222221  


Q ss_pred             CC---cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC-------------CCCeeEEEEEecCceeeecc
Q 012996          268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       268 ~~---~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~s  329 (451)
                      +.   ..++.+.+..+..++..-.+..|.+.|..+++.+..+...             ..-.+.|+++|++..|...+
T Consensus       145 ~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          145 GGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            22   3455677765666655556789999999999999988732             12568899999776665543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=6e-06  Score=82.83  Aligned_cols=301  Identities=11%  Similarity=0.050  Sum_probs=175.2

Q ss_pred             CeEEEECccCceeeeeecC----CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee------------
Q 012996           14 GIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------------   77 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~------------   77 (451)
                      .|.+||..+++........    .-....|.++.  ..++|.+.+. ... +-|.+++..+.......            
T Consensus       231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWig-t~~-~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~  306 (781)
T 3v9f_A          231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIK--QLKDNKLWIA-TEL-NGIMILDLQQNQFLLPEQIRFEFIREGDN  306 (781)
T ss_dssp             EEEEEETTTTEEEC-----------CCCCEEEEE--ECTTSEEEEE-ESS-SCEEEEETTCC---------CEEECBCSS
T ss_pred             cHheECCCCCcEEEEEcCCCccccccCceEEEEE--ECCCCCEEEE-eCC-CCeEEECCCCCeeeeeeccccccccCCCC
Confidence            5888887665543211111    11234566665  5566665543 333 56888888765533211            


Q ss_pred             ---cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec---------cccCCeeEEEEccCCcEEEEeeCCCc
Q 012996           78 ---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---------AHYRAVTCLVFSEDGSFLISGSEDGC  145 (451)
Q Consensus        78 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~s~~~dg~  145 (451)
                         .....|.++...++|. |-+|+.++-|..++..++.......         .....|.++...+++. |..|+.++-
T Consensus       307 ~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~G  384 (781)
T 3v9f_A          307 NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGG  384 (781)
T ss_dssp             TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred             CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence               2345799999998887 4456666779999876554322111         1235688998888776 556676667


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---ccccee
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVID  222 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~  222 (451)
                      |..|+..+....        ............|.++....++   .|..|+.++-+..+|..+++......   ....|.
T Consensus       385 l~~~~~~~~~~~--------~~~~~~~~~~~~v~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~  453 (781)
T 3v9f_A          385 INVFENGKRVAI--------YNKENRELLSNSVLCSLKDSEG---NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR  453 (781)
T ss_dssp             EEEEETTEEEEE--------CC-----CCCSBEEEEEECTTS---CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred             EEEEECCCCeEE--------EccCCCCCCCcceEEEEECCCC---CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence            889987542100        0000001234568888776554   45667777779999987765433221   235788


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~  299 (451)
                      ++...+++. |.+|+. +-+..||..+...       .......   .....|.++...+...|..|+.++-|..||..+
T Consensus       454 ~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          454 VFYEDKNKK-IWIGTH-AGVFVIDLASKKV-------IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             EEEECTTSE-EEEEET-TEEEEEESSSSSC-------CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred             EEEECCCCC-EEEEEC-CceEEEeCCCCeE-------EecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence            998888776 445555 5588898776431       1111111   113678899888833344555544477899776


Q ss_pred             CceEEEeec----CCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          300 HNIVRMFRL----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       300 ~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                      ++.. .+..    ....|.++...++|.+.++.. .|.+..|+..+.
T Consensus       525 ~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~  569 (781)
T 3v9f_A          525 QLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF  569 (781)
T ss_dssp             CEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred             CeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence            6433 3321    234688999988887655544 665466776544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.87  E-value=7.8e-06  Score=73.23  Aligned_cols=239  Identities=8%  Similarity=-0.089  Sum_probs=150.0

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI  138 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~  138 (451)
                      ..|+..+...............+..++|++.+..| .+-...+.|..+++........+.........+++.+. +.+++
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence            46777787766655444445668899999755555 45456778999998766544433333345678999874 45555


Q ss_pred             EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceeeeee-
Q 012996          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV-  216 (451)
Q Consensus       139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~-  216 (451)
                      +-...+.|.+.++..           ...............++++.|.+. .++++-... +.|..+++........+. 
T Consensus       133 ~d~~~~~I~~~~~dG-----------~~~~~l~~~~l~~P~~iavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~  200 (349)
T 3v64_C          133 TDSGTSRIEVANLDG-----------AHRKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT  200 (349)
T ss_dssp             EETTTTEEEEEETTS-----------CSCEEEECTTCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred             EcCCCCeEEEEcCCC-----------CceEEEEeCCCCCcceEEEecCcC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            655677899998843           111111222334568899987552 455555455 788888876433222222 


Q ss_pred             cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEE
Q 012996          217 FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW  295 (451)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iw  295 (451)
                      .-.....++++|++..|+.+. ..+.|..+|+.....       .  ..+.........+++..+.++++-...+.|..+
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-------~--~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-------K--AVISQGLPHPFAITVFEDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E--EEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-------E--EEEeCCCCCceEEEEECCEEEEecCCCCeEEEE
Confidence            234578999998777666654 567899999875321       1  112222345677888546677777778889999


Q ss_pred             eCCCCceEEEeecCCCCeeEEEEEe
Q 012996          296 DPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      +..+++.+..+........++++..
T Consensus       272 ~~~~G~~~~~i~~~~~~p~gi~v~~  296 (349)
T 3v64_C          272 NKFTGKNQEIIRNKLHFPMDIHTLH  296 (349)
T ss_dssp             ETTTCCSCEEEECSCSCCCCEEEEC
T ss_pred             EccCCCccEEeccCCCCCceEEEEc
Confidence            9778877777765444555666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.84  E-value=2.9e-06  Score=75.29  Aligned_cols=227  Identities=9%  Similarity=0.006  Sum_probs=134.7

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecC--------------------CCCeeEEEECC-CCcEEEEeccCCCE
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--------------------AEPIKPIAANS-HGTYIAGGGQSGDI  104 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~~~~~dg~i  104 (451)
                      +.+++.++.++..+ +.|..|+..+.........                    ...+..+++.+ +++++++ ...+.|
T Consensus        26 ~d~~g~~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~~~~i  103 (322)
T 2fp8_A           26 FDSTNKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DCYYHL  103 (322)
T ss_dssp             CCTTCSSEEEECTT-SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ETTTEE
T ss_pred             EcCCCCEEEEEcCC-CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-ECCCCE
Confidence            77888867766666 8999999876554322110                    13578899997 6665554 334458


Q ss_pred             EEEEcCCCcceeee---cc-ccCCeeEEEEcc-CCcEEEEeeC-----------------CCcEEEeeCcchhhhhhhhc
Q 012996          105 YMWEVASGRLLKKW---HA-HYRAVTCLVFSE-DGSFLISGSE-----------------DGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus       105 ~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~  162 (451)
                      ..+|..++......   .+ .......+++.+ +|++.++-..                 ++.|..||..++.       
T Consensus       104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-------  176 (322)
T 2fp8_A          104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE-------  176 (322)
T ss_dssp             EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-------
T ss_pred             EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-------
Confidence            88887655432111   11 123568899999 8987665432                 3667777764311       


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCCCc--eeeee-ecccceeEEEECCCCCEEEEEeC
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGR--LLRNI-VFPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                           ...+.........+++++++  +.|+ +-+..+.|..|++....  ....+ ..+. ...++++++|++.++...
T Consensus       177 -----~~~~~~~~~~p~gia~~~dg--~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          177 -----TTLLLKELHVPGGAEVSADS--SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             -----EEEEEEEESCCCEEEECTTS--SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             -----EEEeccCCccCcceEECCCC--CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence                 11111111234578898887  5554 44566899999987421  11112 2334 788999999986665544


Q ss_pred             ----------CCcEEEEEccCCCCCCCCCCceeeeeeccC----CcceeEEEEecCCEEEEEcCCCcEEEEeCCC
Q 012996          239 ----------DGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       239 ----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~  299 (451)
                                .+.|..+|...          ..+..+...    ...++++++..+.++++...++.|..+++..
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~G----------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEFG----------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTTS----------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred             cccccccCCCccEEEEECCCC----------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence                      45677887643          223233222    2356667664365666666778898888753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=2.1e-05  Score=78.91  Aligned_cols=310  Identities=12%  Similarity=0.030  Sum_probs=179.7

Q ss_pred             CCCeEEEECccCceeeeeecCC---CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--------cCC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCA---SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------LPA   80 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--------~~~   80 (451)
                      ++.|..+|..+++.. .+....   -+...|.++.  ..++|.+.+. ..+ +.|..|+..+.......        ...
T Consensus       136 ~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~--~d~~g~lwig-t~~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~  210 (781)
T 3v9f_A          136 YRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTAT--EAEDGKLYIG-HVE-GGLSILSLNDKSVKHFVHDPQNPNSLPG  210 (781)
T ss_dssp             SSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEE--EEETTEEEEE-ETT-TEEEEEETTTTEEEEECC--------CC
T ss_pred             CCCeeEEECCCCeEE-eeccCcccCCCccceEEEE--ECCCCCEEEE-ecC-CCeEEEcCCCCceEeeecCCCCcccCCC
Confidence            456788887665543 232111   1224466665  5566666553 333 46888998776543221        124


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  153 (451)
                      ..|.++...++|.+.+. +.+ -+.+||..+++......       .....|.++...++|. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            57999999888876654 444 58999987665432211       1245689998888776 55566656688888754


Q ss_pred             hhhhhhhhcccc----cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-------e---ccc
Q 012996          154 VFEECESQRASH----LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-------V---FPS  219 (451)
Q Consensus       154 ~~~~~~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~---~~~  219 (451)
                      ..-..... ...    ............|.++....++   .|..|+.++-|..++..++......       .   ...
T Consensus       288 ~~~~~~~~-~~f~~~~~~~~~~~l~~~~v~~i~~D~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  363 (781)
T 3v9f_A          288 NQFLLPEQ-IRFEFIREGDNNYSLSNASARYIFQDSFN---NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK  363 (781)
T ss_dssp             C----------CEEECBCSSTTSBSSSCEEEEEECSSC---CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred             Ceeeeeec-cccccccCCCCCCCCCCCeEEEEEEeCCC---CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence            21100000 000    0000011234568888776665   5677777778999998765432211       0   235


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee-eeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC
Q 012996          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~  298 (451)
                      .|.+++..+++. |.+|+.++-|..|+..+...       .... ........|.++...+...|..|+.++-|..+|..
T Consensus       364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~  435 (781)
T 3v9f_A          364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA-------IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR  435 (781)
T ss_dssp             CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE-------ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSS
T ss_pred             ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE-------EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCC
Confidence            688999888775 55677667788898765321       0000 00123467889988773445557766678999987


Q ss_pred             CCceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          299 THNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       299 ~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +++......  .....|.++...++|.+.+.. . +.+..++..+..
T Consensus       436 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          436 LKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKK  480 (781)
T ss_dssp             SCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSS
T ss_pred             CCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCe
Confidence            765432211  234679999988888755544 3 446667665443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.83  E-value=1.9e-05  Score=72.14  Aligned_cols=242  Identities=10%  Similarity=-0.043  Sum_probs=150.3

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc-CC
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE-DG  134 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~  134 (451)
                      ..|+..++..............+..|+|++.+..| .+-...+.|+.+++...    .....+.........+++.+ .+
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            56777777766555555456788999999865555 44455678988987652    22333333445678899987 55


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCCCceee
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLR  213 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~  213 (451)
                      +++++-...+.|.+.++..           ......+........+|++.|.+. .++++-.. .+.|...++.......
T Consensus       172 ~lY~~d~~~~~I~~~~~~g-----------~~~~~l~~~~~~~P~~iavdp~~g-~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKG-----------VKRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             EEEEEETTTTEEEEECTTT-----------CSEEEEEECSSCCEEEEEEETTTT-EEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             ceEEEECCCCeEEEEeCCC-----------CceEEEEeCCCCCcceEEEecccC-eEEEEeCCCCCEEEEEeCCCCccEE
Confidence            5555656678899998843           111111222334567899988652 34444322 4788888876433222


Q ss_pred             eee-cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc
Q 012996          214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM  291 (451)
Q Consensus       214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~  291 (451)
                      .+. .-.....++++|++..|+.+. ..+.|..+|+.....       ..+...........++++..+.++++-...+.
T Consensus       240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~  312 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA  312 (400)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EEEEECSSTTSSEEEEEEETTEEEEEESSSCS
T ss_pred             EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCe
Confidence            222 225678999999877777664 457899999876431       22222212234456777754667777777888


Q ss_pred             EEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          292 VRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      |..+|..+++.+..+........++.....
T Consensus       313 V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~  342 (400)
T 3p5b_L          313 IFSANRLTGSDVNLLAENLLSPEDMVLFHN  342 (400)
T ss_dssp             EEEEESSSCCCCEEEECSCSCEEEEEEESG
T ss_pred             EEEEEcCCCCceEEEecCCCCCceEEEEee
Confidence            999998888888877755555666665543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.80  E-value=9.7e-06  Score=71.30  Aligned_cols=236  Identities=13%  Similarity=0.059  Sum_probs=133.8

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC--CEEEEEcCCCccee
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLK  116 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~  116 (451)
                      ...++  |.++++++++-... +.|..||....... .......+..+++.++|+++++.....  .|..++..+++...
T Consensus        34 pegia--~~~~g~lyv~d~~~-~~I~~~d~~g~~~~-~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           34 LENLA--SAPDGTIFVTNHEV-GEIVSITPDGNQQI-HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             EEEEE--ECTTSCEEEEETTT-TEEEEECTTCCEEE-EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             cceEE--ECCCCCEEEEeCCC-CeEEEECCCCceEE-EEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            44555  88888866655455 89999998764332 222346789999999999766543322  37777777776543


Q ss_pred             eec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996          117 KWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (451)
Q Consensus       117 ~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~  195 (451)
                      ... ........++..+++..+++-..++.|.++|................ .......-.....+  ++++. .++++-
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~-~~~~~~~~~~pngi--s~dg~-~lyv~d  185 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA-RSNSESVFPAANGL--KRFGN-FLYVSN  185 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS-CSSTTCCSCSEEEE--EEETT-EEEEEE
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc-cccccCCCCcCCCc--CcCCC-EEEEEe
Confidence            222 11223345555555555555545788888887431000000000000 00001111233445  66652 455566


Q ss_pred             eCCCcEEEEEcCC-Cce--eeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          196 SEDRTCKVWSLLK-GRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       196 ~~d~~i~iwd~~~-~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      ...+.|..|++.. ++.  ...+........++++++|+++++....+.|.++|.....        ..+..+.......
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~--------~~~~~~~~~~~~p  257 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGS  257 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTE
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCE--------EEEeecccccCCc
Confidence            6778999999874 332  1122222346778999999877776677899999865311        1122232233568


Q ss_pred             eEEEEe---c-CCEEEEEcCCC
Q 012996          273 TCLAYS---T-GDLLISGSEDG  290 (451)
Q Consensus       273 ~~~~~~---~-~~~l~s~~~dg  290 (451)
                      ++++|.   | ++.|+.++..+
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEEecccCCCCEEEEECCCC
Confidence            899998   7 56666555443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.79  E-value=3.2e-07  Score=89.95  Aligned_cols=256  Identities=11%  Similarity=0.004  Sum_probs=138.3

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-C-CCCeeEEEECCC
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-AEPIKPIAANSH   91 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~-~~~v~~~~~~~~   91 (451)
                      .+.+||..+++....-.....+.......+  +.++++.++.||.++..+.+||..+........ + ...-.+++..++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD  297 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC
Confidence            588999888764322111111111112233  678899999999766799999988765433221 1 222245566778


Q ss_pred             CcEEEEec-cC-----CCEEEEEcCCCcceeee----ccccCCeeEEEEccCCcEEEEeeCCC---------cEEEeeCc
Q 012996           92 GTYIAGGG-QS-----GDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSFLISGSEDG---------CVRIWSLL  152 (451)
Q Consensus        92 ~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg---------~i~vwd~~  152 (451)
                      +++++.|+ .+     ..+.+||..+++-...-    ......-....+..++..++.|+.+|         .+..||..
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~  377 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  377 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence            99999988 34     46999998776432210    00000000011223444555554444         45677775


Q ss_pred             chhhhhhhhcccccceecccC------CcCceeEEEEee-cCCeeEEEEeeCCC-----------cEEEEEcCCCceeee
Q 012996          153 TVFEECESQRASHLYLHSFTG------HTLRITDIVIGY-GGVSATIVSASEDR-----------TCKVWSLLKGRLLRN  214 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~~i~~~~-~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~  214 (451)
                      +..-        .........      ....-.++.+.. ++  .+++.|+.++           .+.+||..+......
T Consensus       378 ~~~w--------~~~~~~~~~~~~~~~~~~~~~av~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  447 (656)
T 1k3i_A          378 GSGD--------VKSAGKRQSNRGVAPDAMCGNAVMYDAVKG--KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF  447 (656)
T ss_dssp             TTCE--------EEEEEECEETTEECCCCBTCEEEEEETTTT--EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred             Ccce--------eecCCccccccccCCCCCCCceEeccCCCC--eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence            4210        000000000      011122333322 33  7888887543           678888877654433


Q ss_pred             e----ecccceeEEEECCCCCEEEEEeCC-----------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          215 I----VFPSVIDAIALDPAEHVFYAGSRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       215 ~----~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      .    ..+..-.+++..|+++++++|+.+           ..+.+||..+..       +..+..+........+..+.|
T Consensus       448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-------W~~~~~~~~~R~~hs~a~ll~  520 (656)
T 1k3i_A          448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-------FYKQNPNSIVRVYHSISLLLP  520 (656)
T ss_dssp             CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-------EEECCCCSSCCCTTEEEEECT
T ss_pred             ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-------eeecCCCCCccccccHhhcCC
Confidence            2    223334566778899999999864           468999987653       222222222222333444556


Q ss_pred             -CCEEEEEcC
Q 012996          280 -GDLLISGSE  288 (451)
Q Consensus       280 -~~~l~s~~~  288 (451)
                       +++++.|+.
T Consensus       521 dg~v~v~GG~  530 (656)
T 1k3i_A          521 DGRVFNGGGG  530 (656)
T ss_dssp             TSCEEEEECC
T ss_pred             CcEEEecCCC
Confidence             889998885

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.79  E-value=1.8e-06  Score=71.60  Aligned_cols=192  Identities=11%  Similarity=0.090  Sum_probs=122.3

Q ss_pred             eeeeeecCCCCCCceEEecceEeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCC
Q 012996           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSG  102 (451)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg  102 (451)
                      .+.++ .|. +..-...+.  |++ +.+..++|.. ...|+++|+.+++......-..........+.++.| ...-.++
T Consensus        11 v~~~~-phd-~~~ftqGL~--~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X           11 VVKRY-PHD-TTAFTEGLF--YLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEE-ECC-TTCCEEEEE--EET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEc-CCC-CccccccEE--EEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCC
Confidence            44455 332 223344455  765 5555555553 258999999999987665544454444333334444 4445678


Q ss_pred             CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC--Cc---Cc
Q 012996          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HT---LR  177 (451)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~---~~  177 (451)
                      .+.+||..+.+.+.++...... ..++  +++..|+.+..++.|.++|..+.           ..+..+.-  +.   ..
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~-----------~~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTL-----------QQVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTC-----------CEEEEEECEETTEECCC
T ss_pred             EEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCC-----------eEEEEEEEccCCccccc
Confidence            9999999999999988643322 4454  45666666666889999998652           22222221  21   23


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--------------cceeEEEECCCCCEEEEEeC
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~  238 (451)
                      ++.+.+. ++  ...+..-.+..|.+.|..+++.+..+...              ...+.++++|+++.|++.+.
T Consensus       152 lNeLe~~-~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          152 LNELEWV-NG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEEE-TT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ceeeEEe-CC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            4455554 44  55555546889999999999998887622              24688999998777776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.76  E-value=1.7e-06  Score=72.22  Aligned_cols=172  Identities=11%  Similarity=0.070  Sum_probs=115.1

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeE--EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP--IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR  123 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  123 (451)
                      |+ ++.+..+.+.+ |.|+++|+.+++..... .......  +++..+ ++.++.-.++.+.+||..+.+.+.++.... 
T Consensus        62 ~~-~~~Ly~stG~~-g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-  136 (268)
T 3nok_A           62 FH-QGHFFESTGHQ-GTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRYSG-  136 (268)
T ss_dssp             EE-TTEEEEEETTT-TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEECSS-
T ss_pred             EE-CCEEEEEcCCC-CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeCCC-
Confidence            65 34555555555 88999999999877655 3344444  555433 333444568899999999999999886432 


Q ss_pred             CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc--CCc---CceeEEEEeecCCeeEEEEeeCC
Q 012996          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHT---LRITDIVIGYGGVSATIVSASED  198 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~i~~~~~~~~~~l~s~~~d  198 (451)
                      .-..++  +|++.|+.+..++.|.++|..+.           ..+..+.  .+.   ..++.+.|. ++  ...+....+
T Consensus       137 eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~-----------~v~~~I~V~~~g~~v~~lNeLe~~-dG--~lyanvw~s  200 (268)
T 3nok_A          137 EGWGLC--YWNGKLVRSDGGTMLTFHEPDGF-----------ALVGAVQVKLRGQPVELINELECA-NG--VIYANIWHS  200 (268)
T ss_dssp             CCCCEE--EETTEEEEECSSSEEEEECTTTC-----------CEEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTC
T ss_pred             ceeEEe--cCCCEEEEECCCCEEEEEcCCCC-----------eEEEEEEeCCCCcccccccccEEe-CC--EEEEEECCC
Confidence            223444  45777777777889999998653           2222221  122   234566665 44  555555568


Q ss_pred             CcEEEEEcCCCceeeeeecc--------------cceeEEEECCCCCEEEEEeC
Q 012996          199 RTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~  238 (451)
                      ..|.+.|..+++.+..+...              ...+.++++|+++.|++.+.
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            89999999999999888732              25688999998776666553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.74  E-value=4.3e-06  Score=80.15  Aligned_cols=240  Identities=10%  Similarity=0.054  Sum_probs=140.1

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCC-----CCCccEEEEECCCCceeeeec
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPS-----ASSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~-----~d~g~i~vw~~~~~~~~~~~~   78 (451)
                      |+.++ .|+.|..+|..+|+.+......... ...+.+..  ...++..++.++     .+ |.|+-+|..+++...+..
T Consensus       124 V~v~t-~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP--~v~~g~V~vg~~g~e~g~~-g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          124 ILKTQ-LDGNVAALNAETGETVWKVENSDIKVGSTLTIAP--YVVKDKVIIGSSGAELGVR-GYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEECCBCGGGTCC-CEEEEEETTTCCEEEEEE
T ss_pred             EEEEc-CCCEEEEEECCCCCEEEeecCCCCCccceeecCC--EEECCEEEEEecccccCCC-CeEEEEECCCCcEEEEEc
Confidence            56677 7899999999999998776543210 01222211  223444443332     24 899999999998876544


Q ss_pred             CCCCe---------------------------------------eEEEECCCCcEEEEeccC----------------CC
Q 012996           79 PAEPI---------------------------------------KPIAANSHGTYIAGGGQS----------------GD  103 (451)
Q Consensus        79 ~~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------g~  103 (451)
                      ...+.                                       ..+++.+....+..+..+                +.
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s  279 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence            32211                                       134566677777776655                37


Q ss_pred             EEEEEcCCCcceeeecccc----------CCeeEEEEc-cCC---cEEEEeeCCCcEEEeeCcchhhhhhhhccc-----
Q 012996          104 IYMWEVASGRLLKKWHAHY----------RAVTCLVFS-EDG---SFLISGSEDGCVRIWSLLTVFEECESQRAS-----  164 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----  164 (451)
                      |..+|..+|+.+..++...          .++. +... .+|   ..++.++.+|.+.++|..++..........     
T Consensus       280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~  358 (599)
T 1w6s_A          280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  358 (599)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence            9999999999887765321          1221 2222 467   567788899999999997764322111000     


Q ss_pred             -------ccceec--------------ccCCc--CceeEEEEeecCCeeEEEE---------------------------
Q 012996          165 -------HLYLHS--------------FTGHT--LRITDIVIGYGGVSATIVS---------------------------  194 (451)
Q Consensus       165 -------~~~~~~--------------~~~~~--~~i~~i~~~~~~~~~~l~s---------------------------  194 (451)
                             ..++..              +.+..  ..-..++++|..  .++++                           
T Consensus       359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR--ELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC--CEEEEeccccceeeecccccccCCcceecccc
Confidence                   000000              00000  000112233222  11111                           


Q ss_pred             ------ee------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          195 ------AS------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       195 ------~~------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                            .+      ..|.|..||+.+++.+.......+...-.+...+..+++++.||.++.||.++++
T Consensus       437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence                  01      4578999999999998887654333221222356788889999999999999985

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.72  E-value=5.3e-06  Score=79.58  Aligned_cols=289  Identities=12%  Similarity=0.032  Sum_probs=158.9

Q ss_pred             ccCcccCCCCCCccEEEEECCCCceeeeecCCCCe----------eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI----------KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  118 (451)
                      ++..+ +++.+ +.|.-+|..+++...........          ..+++  .+..+++++.++.|.-+|..+|+.+...
T Consensus        68 ~g~vy-v~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~  143 (582)
T 1flg_A           68 DGVIY-VTASY-SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             TTEEE-EEETT-TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred             CCEEE-EEcCC-CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence            34433 33333 33888999888877665432211          11222  2556777888999999999999988766


Q ss_pred             ccccC----Cee-EEEEcc---CCc-EEEEee------CCCcEEEeeCcchhhhhhhhcccccce---------------
Q 012996          119 HAHYR----AVT-CLVFSE---DGS-FLISGS------EDGCVRIWSLLTVFEECESQRASHLYL---------------  168 (451)
Q Consensus       119 ~~~~~----~v~-~~~~~~---~~~-~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------  168 (451)
                      .....    .+. ......   +++ .+++++      .+|.|..+|..++.......... ..+               
T Consensus       144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~-~~~~p~~~~~~~~~g~~g  222 (582)
T 1flg_A          144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVE-GHMGRLNGKDSTVTGDVK  222 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESST-TCEEEETTEEEEESSCTT
T ss_pred             cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCc-cccccccCcccccccccc
Confidence            43220    111 111111   233 566654      37899999998765432211100 000               


Q ss_pred             -e--------------ccc-CCcCceeEEEEeecCCeeEEEEeeC--------------------C----CcEEEEEcCC
Q 012996          169 -H--------------SFT-GHTLRITDIVIGYGGVSATIVSASE--------------------D----RTCKVWSLLK  208 (451)
Q Consensus       169 -~--------------~~~-~~~~~i~~i~~~~~~~~~~l~s~~~--------------------d----~~i~iwd~~~  208 (451)
                       .              ... +....-..+++.+..  ..++.++.                    |    +.|..+|..+
T Consensus       223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~--g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET--NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT--TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             cccCCCccccccccccccccCCccccCCceEcCCC--CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence             0              000 000001223444444  45555442                    2    5899999999


Q ss_pred             Cceeeeeecc-c---------ceeEEEEC-CCC---CEEEEEeCCCcEEEEEccCCCCCCCCCC--------------ce
Q 012996          209 GRLLRNIVFP-S---------VIDAIALD-PAE---HVFYAGSRDGSIYIAALNAESPSTSSYG--------------MH  260 (451)
Q Consensus       209 ~~~~~~~~~~-~---------~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------~~  260 (451)
                      |+.+..+... .         ...-+... .+|   ..++.++.+|.++++|..+++.......              .+
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~  380 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR  380 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence            9998887631 1         11111221 456   4788899999999999988754211000              00


Q ss_pred             eee--------------------eeccCC--cceeEEEEec-CCEEEEEc------------------------------
Q 012996          261 IIG--------------------SLSDHS--KAVTCLAYST-GDLLISGS------------------------------  287 (451)
Q Consensus       261 ~~~--------------------~~~~~~--~~v~~~~~~~-~~~l~s~~------------------------------  287 (451)
                      ++.                    ...+..  ..-..++++| ..++++..                              
T Consensus       381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~  460 (582)
T 1flg_A          381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM  460 (582)
T ss_dssp             EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred             EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence            000                    000000  0011345666 33333321                              


Q ss_pred             ---CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996          288 ---EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       288 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~  345 (451)
                         .+|.|.-||+.+++.+-+...+ .++..-.....+..++.++.||.++.+|..+++..
T Consensus       461 ~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          461 YDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence               3688999999999998877653 23333333345667888999999999998876543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.66  E-value=1.5e-06  Score=85.18  Aligned_cols=241  Identities=10%  Similarity=0.065  Sum_probs=135.4

Q ss_pred             eEEEECC-CCcEEEEeccCC-----------CEEEEEcCCCcce--eeec-cccCCeeEEEEccCCcEEEEeeC-CCcEE
Q 012996           84 KPIAANS-HGTYIAGGGQSG-----------DIYMWEVASGRLL--KKWH-AHYRAVTCLVFSEDGSFLISGSE-DGCVR  147 (451)
Q Consensus        84 ~~~~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~-dg~i~  147 (451)
                      ..+++.+ ++++++.|+.+.           .+.+||..+++..  ..+. .+.....++++..++++++.|+. +..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            4666777 888888887543           5889999877532  2222 23334456788889999999984 45799


Q ss_pred             EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CC-----CcEEEEEcCCCceeee-----ee
Q 012996          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-----RTCKVWSLLKGRLLRN-----IV  216 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~-----~~  216 (451)
                      +||..+.         ....+..+..... -.+++..+++  .+++.|+ .+     ..+.+||..+++-...     ..
T Consensus       269 ~yd~~t~---------~W~~~~~~~~~R~-~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p  336 (656)
T 1k3i_A          269 LYDSSSD---------SWIPGPDMQVARG-YQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP  336 (656)
T ss_dssp             EEEGGGT---------EEEECCCCSSCCS-SCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred             EecCcCC---------ceeECCCCCcccc-ccceEEecCC--eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc
Confidence            9998652         1111111111111 1233444455  7888887 34     5699999987654322     01


Q ss_pred             cccceeEEEECCCCCEEEEEeCCC---------cEEEEEccCCCCCCCCCCceeeeeecc------CCcceeEEEEec--
Q 012996          217 FPSVIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST--  279 (451)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~--  279 (451)
                      ....-....+..++..++.|+.+|         .+..||..+..-      .........      ....-.++.+..  
T Consensus       337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w------~~~~~~~~~~~~~~~~~~~~~av~~~~~~  410 (656)
T 1k3i_A          337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD------VKSAGKRQSNRGVAPDAMCGNAVMYDAVK  410 (656)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE------EEEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred             cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce------eecCCccccccccCCCCCCCceEeccCCC
Confidence            111100112334566666665554         456777765431      011111100      011234455544  


Q ss_pred             CCEEEEEcCCC-----------cEEEEeCCCCceEEEe--ecCCCCe-eEEEEEecCceeeeccCC-----------CCc
Q 012996          280 GDLLISGSEDG-----------MVRVWDPITHNIVRMF--RLAKGPV-NNILVVRRPLYLNLGSFS-----------NPH  334 (451)
Q Consensus       280 ~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~v-~~l~~s~~~~~l~~~s~d-----------~~i  334 (451)
                      +.+++.|+.++           .|.+||..+..-....  ..+.... .+.+..|+++.++.|+.+           ..+
T Consensus       411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v  490 (656)
T 1k3i_A          411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP  490 (656)
T ss_dssp             TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred             CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccce
Confidence            77778887543           6888998776544433  2233332 445667899999999865           346


Q ss_pred             cccccCCC
Q 012996          335 TSSRRHGS  342 (451)
Q Consensus       335 ~iw~~~~~  342 (451)
                      .+||....
T Consensus       491 ~~ydp~t~  498 (656)
T 1k3i_A          491 EIYVPEQD  498 (656)
T ss_dssp             EEEEGGGT
T ss_pred             EEEcCCCC
Confidence            77776543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.64  E-value=4.7e-05  Score=67.06  Aligned_cols=238  Identities=10%  Similarity=-0.045  Sum_probs=146.4

Q ss_pred             ccEEEEECCCCc--eeeeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcce-eeeccccCCeeEEEEcc-CCc
Q 012996           61 GSILYWSWSKPQ--VEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSE-DGS  135 (451)
Q Consensus        61 g~i~vw~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~-~~~  135 (451)
                      ..|+..+++...  ..........+..++|.+. +.++.+-...+.|..+++..+... ..+.........+++.+ .+.
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~   92 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK   92 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe
Confidence            678888887653  2222222345778999985 445555556778999998765422 22222334567899987 455


Q ss_pred             EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceee
Q 012996          136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLR  213 (451)
Q Consensus       136 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~  213 (451)
                      ++++-...+.|.++++...           ..............++++.+.+  ..|+.+.  ..+.|...++.. ....
T Consensus        93 ly~~d~~~~~I~~~~~dG~-----------~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG-~~~~  158 (318)
T 3sov_A           93 LYWTDSETNRIEVSNLDGS-----------LRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDG-SSRF  158 (318)
T ss_dssp             EEEEETTTTEEEEEETTSC-----------SCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTS-CSCE
T ss_pred             EEEEECCCCEEEEEECCCC-----------cEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCC-CCeE
Confidence            5556556778999998431           1111112333456789998764  3444444  357888888753 3222


Q ss_pred             eee--cccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996          214 NIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (451)
Q Consensus       214 ~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg  290 (451)
                      .+.  .-.....++++|++..|+.+ +..+.|..+|+.....       ..+  ..+.......+++..+.++++-...+
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~--~~~~~~~P~glav~~~~lywtd~~~~  229 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAV--VKGSLPHPFALTLFEDILYWTDWSTH  229 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE--ECSCCSCEEEEEEETTEEEEEETTTT
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEE--ecCCCCCceEEEEeCCEEEEEecCCC
Confidence            322  22456899999977766665 4567899999875321       111  12234456777776566677767788


Q ss_pred             cEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      .|..++..+++....+........+++....
T Consensus       230 ~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~  260 (318)
T 3sov_A          230 SILACNKYTGEGLREIHSDIFSPMDIHAFSQ  260 (318)
T ss_dssp             EEEEEETTTCCSCEEEECCCSSCCCEEEECG
T ss_pred             eEEEEECCCCCceEEEeCCCCCCcEEEEecc
Confidence            9999999888877777654444555555433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.64  E-value=2.1e-05  Score=66.10  Aligned_cols=202  Identities=10%  Similarity=0.118  Sum_probs=132.7

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      +-...+..++  |.|++..|.+....++.|...|.. +.+.....  .......|++.+++.++++.-.++.+.++++..
T Consensus        24 g~~~~lSGla--~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           24 GITNNISSLT--WSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             TCCSCEEEEE--EETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CcccCcceeE--EeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            3335677777  999877776655555999999988 55544432  235788999999998777766678899998865


Q ss_pred             Ccce---eeec------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee----cccCCcCce
Q 012996          112 GRLL---KKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH----SFTGHTLRI  178 (451)
Q Consensus       112 ~~~~---~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~i  178 (451)
                      ...+   ....      ........++|+|.++.|+++.......+|.+......     .......    .-..+...+
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-----~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-----NELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-----SCCEEEECHHHHHTCCSSCC
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-----CceeeecchhhccccccCCc
Confidence            5422   2221      23445689999998877777777666666666410000     0000000    001123456


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc----------cceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP----------SVIDAIALDPAEHVFYAGSRDGSIYIAA  246 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d  246 (451)
                      .++++.|... .+++....++.+..+|.. ++.+..+...          .....|+|+++|+ |++.+..+.++.|.
T Consensus       176 S~l~~dp~tg-~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          176 SGAEFNQQKN-TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             CEEEEETTTT-EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             eeEEEcCCCC-eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            8899988753 777778888899999965 6666666633          2568999999997 55557777666664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.61  E-value=0.00013  Score=65.15  Aligned_cols=233  Identities=10%  Similarity=-0.058  Sum_probs=136.9

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      +..+|.+..++. +|+.+. ...|+..++........+. ....+..++|++.+..|+ +-...+.|..+++...     
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-----  105 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-----  105 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC-----
Confidence            344566666644 444433 3458888876554433333 334578999997555554 5456778988888431     


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe-
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS-  237 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-  237 (451)
                            ..............++++.+.+. .++++-...+.|.+.++........+. .-.....++++|.+..|+... 
T Consensus       106 ------~~~~~~~~~~~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~  178 (349)
T 3v64_C          106 ------NVEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW  178 (349)
T ss_dssp             ------SCEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred             ------CceEEEeCCCCCccEEEEecCCC-eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc
Confidence                  11111122223456788886442 566666677899999986543322222 234578999999666665554 


Q ss_pred             CC-CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE-EEEcCCCcEEEEeCCCCceEEEeecCCCCee
Q 012996          238 RD-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRLAKGPVN  314 (451)
Q Consensus       238 ~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  314 (451)
                      .. +.|..+++.....       .  ......-...+.|+++| +..| ++-...+.|..+|+........+........
T Consensus       179 ~~~~~I~r~~~dG~~~-------~--~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~  249 (349)
T 3v64_C          179 GNTPRIEASSMDGSGR-------R--IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPF  249 (349)
T ss_dssp             SSSCEEEEEETTSCSC-------E--ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCCCEEEEEeCCCCCc-------E--EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCce
Confidence            44 7888888876421       1  11112234678999998 5544 4445677899999865433333333344567


Q ss_pred             EEEEEecCceeeeccCCCCccccc
Q 012996          315 NILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       315 ~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      .+++ ..+..+++-...+.|...+
T Consensus       250 giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          250 AITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEEE-ECCEEEEecCCCCeEEEEE
Confidence            7888 3444555544556666555

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.61  E-value=0.0001  Score=66.91  Aligned_cols=233  Identities=10%  Similarity=-0.064  Sum_probs=138.4

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      .-.|.+..+. .+|+.+. ...|+.+++.......... ....+..++|++.+. ++++-...+.|..+++...      
T Consensus        78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~------  148 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS------  148 (386)
T ss_dssp             SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------
T ss_pred             CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC------
Confidence            3445555553 3444433 3568888887665444443 345578999997544 4445556778988988431      


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC-
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-  238 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-  238 (451)
                           .....+........++++.+.+. .++++-...+.|.+.++........+. .......++++|.+..|+.... 
T Consensus       149 -----~~~~~~~~~~~~p~glavd~~~g-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          149 -----NVEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             -----CEEEEECSSCSCCCCEEEETTTT-EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred             -----CcEEEEeCCCCCccEEEEEeCCC-eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence                 11111122223446788876442 566666677889999886443322222 2256789999997776666543 


Q ss_pred             C-CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE
Q 012996          239 D-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (451)
Q Consensus       239 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (451)
                      . +.|+.+++.....         .......-...+.|+++| +. +.++-+..+.|..+|+........+.........
T Consensus       223 ~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~g  293 (386)
T 3v65_B          223 NTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFA  293 (386)
T ss_dssp             SSCEEEEEETTSCSC---------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEE
T ss_pred             CCCEEEEEeCCCCCc---------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceE
Confidence            3 6788888776421         111222334678999997 44 5555566788999998654333333333445677


Q ss_pred             EEEEecCceeeeccCCCCcccccc
Q 012996          316 ILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       316 l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      |++ ..+..+++-...+.|..++.
T Consensus       294 iav-~~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          294 ITV-FEDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             EEE-ETTEEEEEETTTTEEEEEET
T ss_pred             EEE-ECCEEEEeeCCCCeEEEEEC
Confidence            888 44455555555666666663

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.60  E-value=0.00019  Score=63.25  Aligned_cols=218  Identities=9%  Similarity=-0.028  Sum_probs=129.2

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC----Cceeeee-cCCCCeeEEE
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA   87 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~----~~~~~~~-~~~~~v~~~~   87 (451)
                      ..|+..|+.+.+....+..    ......++  |.+.+..+..+...++.|..++.+.    ....... .....+..++
T Consensus        10 ~~I~~i~~~~~~~~~~~~~----~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla   83 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN----LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA   83 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS----CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             CeEEEEECCCcceEehhcC----CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence            4799999987765544432    23445566  8887666665554448999999876    2222211 1224568899


Q ss_pred             ECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-C-CcEEEeeCcchhhhhhhhccc
Q 012996           88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS  164 (451)
Q Consensus        88 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~  164 (451)
                      +.+. +++.++-...+.|.++++........+.........+++.|.+..|+.+.. . +.|...++..          .
T Consensus        84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG----------~  153 (316)
T 1ijq_A           84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----------V  153 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----------C
T ss_pred             EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC----------C
Confidence            9864 445555566788999997644333233333456789999986655554443 2 6788877632          1


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c---ccceeEEEECCCCCEEEEEeCCC
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~---~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                      . ........-.....+++++++. .+.++-+..+.|..+|+... ....+. .   ......+++. .+..+++-...+
T Consensus       154 ~-~~~~~~~~~~~P~gla~d~~~~-~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          154 D-IYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             C-EEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             C-eEEEEECCCCCceEEEEeccCC-EEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            1 1111112234567899987652 45555556779999998643 233332 1   2345677774 355555555677


Q ss_pred             cEEEEEccCC
Q 012996          241 SIYIAALNAE  250 (451)
Q Consensus       241 ~i~i~d~~~~  250 (451)
                      .|..++..++
T Consensus       230 ~V~~~~~~~g  239 (316)
T 1ijq_A          230 AIFSANRLTG  239 (316)
T ss_dssp             EEEEEETTTC
T ss_pred             eEEEEeCCCC
Confidence            8888887554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.60  E-value=3.2e-05  Score=65.04  Aligned_cols=202  Identities=14%  Similarity=0.128  Sum_probs=128.0

Q ss_pred             eeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEE
Q 012996          117 KWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      .+.+-...+..++|+|++..|+ +...++.|...|..            ...+..+. .-.....++++..++  .++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~------------g~v~~~i~l~g~~D~EGIa~~~~g--~~~vs   86 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN------------GDLIRTIPLDFVKDLETIEYIGDN--QFVIS   86 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT------------CCEEEEEECSSCSSEEEEEECSTT--EEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC------------CCEEEEEecCCCCChHHeEEeCCC--EEEEE
Confidence            3445556899999999765554 56677888888873            22222221 112456778887665  66666


Q ss_pred             eeCCCcEEEEEcCCCce---eeeee-------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          195 ASEDRTCKVWSLLKGRL---LRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                      .-.++.+.++++.....   +....       .+.....++|+|.++.|+++.......+|.++.. ....  .......
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~-~~~~--~l~i~~~  163 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL-LSSN--ELHISKD  163 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST-TCSS--CCEEEEC
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc-ccCC--ceeeecc
Confidence            66778899998765442   22221       2334589999999988888877666566665521 0000  1111100


Q ss_pred             ----eccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC---------CeeEEEEEecCceeeecc
Q 012996          265 ----LSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG---------PVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       265 ----~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~l~~s~~~~~l~~~s  329 (451)
                          -..+...+.+++++|  +.+++....+..|.++|.. ++.+..+....+         .--.|+|.++|+..++ +
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s  241 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S  241 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred             hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence                011345678999999  7788888888899999955 667766654322         5688999999975554 5


Q ss_pred             CCCCcccc
Q 012996          330 FSNPHTSS  337 (451)
Q Consensus       330 ~d~~i~iw  337 (451)
                      .-+.++.+
T Consensus       242 E~n~~y~f  249 (255)
T 3qqz_A          242 EPNRFYRF  249 (255)
T ss_dssp             TTTEEEEE
T ss_pred             CCceEEEE
Confidence            65544433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.57  E-value=3.5e-05  Score=67.33  Aligned_cols=201  Identities=14%  Similarity=0.270  Sum_probs=130.5

Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC----CcE--E-E-EeeC--CCcEEEeeCcchhhhhhh
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSF--L-I-SGSE--DGCVRIWSLLTVFEECES  160 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~-s~~~--dg~i~vwd~~~~~~~~~~  160 (451)
                      ...+++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    |+.  + + +.-.  +++|.+|++...      
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~------  109 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK------  109 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT------
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC------
Confidence            4455655566778999999 8998888753  56677666552    222  2 3 3333  578999977321      


Q ss_pred             hcccccceeccc-------CCcCceeEEEE--eecCCeeEEEEeeCCCcEEEEEc-------CCCceeeeeecccceeEE
Q 012996          161 QRASHLYLHSFT-------GHTLRITDIVI--GYGGVSATIVSASEDRTCKVWSL-------LKGRLLRNIVFPSVIDAI  224 (451)
Q Consensus       161 ~~~~~~~~~~~~-------~~~~~i~~i~~--~~~~~~~~l~s~~~d~~i~iwd~-------~~~~~~~~~~~~~~i~~~  224 (451)
                         .. .+..+.       .-...+..+|+  ++.....++++...+|.+..|++       .+.+.++++...+.+..|
T Consensus       110 ---~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc  185 (355)
T 3amr_A          110 ---NG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGM  185 (355)
T ss_dssp             ---TC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEE
T ss_pred             ---CC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceE
Confidence               01 122221       11156677787  44332247888889999999988       244677888888999999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cC-CcceeEEEEec---CC-EEEEEc-CCCcEEEEeC
Q 012996          225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DH-SKAVTCLAYST---GD-LLISGS-EDGMVRVWDP  297 (451)
Q Consensus       225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~---~~-~l~s~~-~dg~i~iwd~  297 (451)
                      ..++....|+++-.+.-|..|+.......    ....+.... ++ ...+..|++-+   +. +|++++ .++++.+||.
T Consensus       186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~----~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          186 AADDEYGRLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEETTTTEEEEEETTTEEEEEECSTTSCS----CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             EEcCCCCeEEEecccceEEEEeCCcCCCC----CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            99999999999999877766665432210    012333331 22 24688888853   33 666666 5779999999


Q ss_pred             C-CCceEEEeec
Q 012996          298 I-THNIVRMFRL  308 (451)
Q Consensus       298 ~-~~~~~~~~~~  308 (451)
                      . +.+.+..|..
T Consensus       262 ~~~~~~vg~f~I  273 (355)
T 3amr_A          262 QGKNKYVADFRI  273 (355)
T ss_dssp             STTCCEEEEEEE
T ss_pred             CCCCcEEEEEEe
Confidence            6 6777777763

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=1.3e-05  Score=79.73  Aligned_cols=195  Identities=12%  Similarity=0.025  Sum_probs=111.3

Q ss_pred             ceEEecceEe-eccCcccCCCCCC----ccEEEEECCCC-ceeeeecCCCCeeEEEECCCCcEEEEeccC-----CCEEE
Q 012996           38 GLACVGQRFL-ASSQLREQPSASS----GSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQS-----GDIYM  106 (451)
Q Consensus        38 ~v~~~~~~~~-~~~~~l~~~~~d~----g~i~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i  106 (451)
                      .+....  || |+|+++|.+...+    ..|+++|+.++ +...... ......++|+|||+.|+....+     ..|++
T Consensus       175 ~~~~~~--~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVK--PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEE--ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeE--ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            455556  99 9999988543321    46999999987 5321111 1124578999999888877664     25888


Q ss_pred             EEcCCCcce--eeec-cccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccc--eecccCCcCce
Q 012996          107 WEVASGRLL--KKWH-AHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLY--LHSFTGHTLRI  178 (451)
Q Consensus       107 wd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~i  178 (451)
                      +++.++...  ..+. ........+.|+|||++|+..+.   ...|.++|+.+.         ....  ...........
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~---------~~~~~~~~l~~~~~~~~  322 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG---------NAHNTLEIVRPREKGVR  322 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC---------TTCCCEEESSCCCTTCC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC---------CCCceeEEeecCCCCce
Confidence            888776432  2222 22344667899999998886553   345788888542         1111  11222233444


Q ss_pred             eEEEEeecCCeeEEEEeeCC----CcEEEEEcCCC-ceee-eeeccc--ceeEEEECCCCCEEEEEeCCCc--EEEEEc
Q 012996          179 TDIVIGYGGVSATIVSASED----RTCKVWSLLKG-RLLR-NIVFPS--VIDAIALDPAEHVFYAGSRDGS--IYIAAL  247 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d----~~i~iwd~~~~-~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~  247 (451)
                      .++.|+.++  .+++.+..+    ..|..+|+.++ .... .+.+..  .+..+.+. .+.++++...++.  |+++++
T Consensus       323 ~s~~~~~g~--~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          323 YDVQMHGTS--HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEETTT--EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeeeeCC--EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            555443333  455555443    35677777642 2222 233322  45556665 3445556666775  555564

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=2.7e-05  Score=71.78  Aligned_cols=239  Identities=7%  Similarity=0.004  Sum_probs=134.5

Q ss_pred             CeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC-C----cEEEeeCcchh
Q 012996           82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED-G----CVRIWSLLTVF  155 (451)
Q Consensus        82 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g----~i~vwd~~~~~  155 (451)
                      ....|+++| ++..|.++...+.|+.+|+..+...... ........++|++++++|+.+... +    .+.+++...  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g--  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES--  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence            567899998 4555655555578999998766544333 345567899999999966665542 2    233333211  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHV  232 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~  232 (451)
                              .......+. ......++++++ ++  .++++-..++.|..++...+.......  .......++|+|++++
T Consensus       215 --------~~~~~~~l~-~~~~p~giavdp~~g--~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          215 --------GFKVITELT-KGQNCNGAETHPING--ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             --------TSCSEEEEE-ECSSCCCEEECTTTC--CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             --------ceeeeeeec-cCCCceEEEEeCCCC--EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence                    111001111 122345677888 44  566666678899999987665422222  2235778999999996


Q ss_pred             EEEE-eCCCcEEEEEccCCCCCCCCCCceeeeee------------ccCCccee-EEEEe--------c-CCEEEEEcCC
Q 012996          233 FYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL------------SDHSKAVT-CLAYS--------T-GDLLISGSED  289 (451)
Q Consensus       233 l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~v~-~~~~~--------~-~~~l~s~~~d  289 (451)
                      |+++ ...+.|+.++..........  ...+...            ...-.... .++..        + +.++++-...
T Consensus       284 lyv~d~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n  361 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDWKTKRLTT--PYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN  361 (430)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECC--CEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred             EEEEECCCCEEEEEeCCcccccccc--eEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence            6555 46678999887643100000  0000000            00011223 45553        3 4555555567


Q ss_pred             CcEEEEeCCCCceEEEeecC------------------CCCeeEEEEEec-CceeeeccCCCCccccc
Q 012996          290 GMVRVWDPITHNIVRMFRLA------------------KGPVNNILVVRR-PLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~s~~-~~~l~~~s~d~~i~iw~  338 (451)
                      +.|+.++ .++.... +.+.                  -..-..|+++|+ +.++++-...+.|+..+
T Consensus       362 ~~I~~i~-~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          362 HCIRILT-PQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             TEEEEEC-TTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             cEEEEEC-CCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence            7888888 4564333 2221                  114678999994 55555544455555544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.51  E-value=9.1e-05  Score=68.31  Aligned_cols=238  Identities=11%  Similarity=0.055  Sum_probs=135.5

Q ss_pred             CeeEEEECCC--CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcch
Q 012996           82 PIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTV  154 (451)
Q Consensus        82 ~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~  154 (451)
                      ....|+|+|+  +..|.++...+.|+.+|..++...... ........++|+++++ |+.+...+     .+...+... 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~-  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS-  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG-
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC-
Confidence            4679999984  334444444488999998777655433 3445688999999999 44444321     122233211 


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeee-e--cccceeEEEECCCC
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI-V--FPSVIDAIALDPAE  230 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~i~~~~~~~~~  230 (451)
                               .......+. .......+++.+ ++  .++++-..++.|+.+|..++.....+ .  .......++++|++
T Consensus       217 ---------~~~~~~~~~-~~~~P~giavd~~~G--~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          217 ---------GFTERLSLC-NARGAKTCAVHPQNG--KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             ---------TTCCEEEEE-ECSSBCCCEECTTTC--CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred             ---------Ceecccccc-ccCCCCEEEEeCCCC--eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence                     000001111 123345677777 44  55556667788999998877653332 2  12223469999999


Q ss_pred             CEEEEEe-CCCcEEEEEccCCCCCCCCCCceee-ee-----------eccCCcceeEEEE---------ec-CCEEEEEc
Q 012996          231 HVFYAGS-RDGSIYIAALNAESPSTSSYGMHII-GS-----------LSDHSKAVTCLAY---------ST-GDLLISGS  287 (451)
Q Consensus       231 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~-----------~~~~~~~v~~~~~---------~~-~~~l~s~~  287 (451)
                      +.|+++. ..+.|+.++..........  ...+ ..           ....-.....+++         .+ +.++++-.
T Consensus       285 ~~LYvad~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~  362 (433)
T 4hw6_A          285 DWAYIIYNGKHCIYRVDYNRETGKLAV--PYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR  362 (433)
T ss_dssp             SEEEEEETTTTEEEEEEBCTTTCCBCC--CEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcccCc--EEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC
Confidence            9666654 5678999887632110000  0000 00           0001234677888         56 66777767


Q ss_pred             CCCcEEEEeCCCCceEEEeecC------------------CCCeeEEEEE-ecCceeeeccCCCCccccc
Q 012996          288 EDGMVRVWDPITHNIVRMFRLA------------------KGPVNNILVV-RRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~s-~~~~~l~~~s~d~~i~iw~  338 (451)
                      ..+.|+.++. ++.. .++.+.                  -..-..|+++ ++|.++++=...+.|+..+
T Consensus       363 ~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          363 DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            7888999985 5643 333321                  1235678999 5666555555555555544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.50  E-value=1.8e-06  Score=84.71  Aligned_cols=240  Identities=11%  Similarity=-0.015  Sum_probs=139.5

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCC----CcceeeeccccCCeeEEEEcc-CC
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSE-DG  134 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~  134 (451)
                      +.|+..++.+............+..|+|++.+..|..+ ...+.|+.+++..    ......+.........|++.+ .+
T Consensus       386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g  465 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  465 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS
T ss_pred             cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC
Confidence            57888888776654444444567899999876666554 4567899999865    222222222223456788875 44


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CC-CcEEEEEcCCCcee
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-RTCKVWSLLKGRLL  212 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d-~~i~iwd~~~~~~~  212 (451)
                      +++++-...+.|.++++...           .....+.........+++.+.+  ..|+.+. .. +.|..+++.... .
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~-----------~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~-~  531 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGV-----------KRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVD-I  531 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSC-----------CEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCC-C
T ss_pred             cEEEEeccCCeEEEEecCCC-----------ceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCC-e
Confidence            55555556788999987431           1111112122345677887755  3444333 22 678888775322 2


Q ss_pred             eeee--cccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC
Q 012996          213 RNIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED  289 (451)
Q Consensus       213 ~~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d  289 (451)
                      ..+.  .-.....|+|+|++..|+.+ ...+.|..+++.....       ..+............|++..+.++++....
T Consensus       532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~~~~P~glavd~~~lywtd~~~  604 (699)
T 1n7d_A          532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIIN  604 (699)
T ss_dssp             CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------EEECCCSSSCSSCCCCEEETTEEEEECSTT
T ss_pred             eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------EEEEecCCcCCCceEeEEECCEEEEEeCCC
Confidence            2221  22346789999976666555 4567899999875321       112111112233455666556566666677


Q ss_pred             CcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      +.|..++..+++.+..+.......+.|++.+.
T Consensus       605 ~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          605 EAIFSANRLTGSDVNLLAENLLSPEDMVLFHQ  636 (699)
T ss_dssp             TCEEEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred             CeEEEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence            89999998889888877654334455554433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.49  E-value=0.00027  Score=69.97  Aligned_cols=240  Identities=10%  Similarity=-0.058  Sum_probs=142.6

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccCC-
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDG-  134 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-  134 (451)
                      ..|+..++..............+..|+|.+.. .++++-...+.|+.+++...    .....+.........|++.+.+ 
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~  483 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  483 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence            45666666655544444455678899998854 44455555678888888642    2233333344567789998766 


Q ss_pred             cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceee
Q 012996          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR  213 (451)
Q Consensus       135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~  213 (451)
                      +++++-...+.|.+.++..           ......+........+|++.+... .++++-... +.|...++.......
T Consensus       484 ~LY~tD~~~~~I~v~~ldG-----------~~~~~l~~~~l~~P~gIaVDp~~g-~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKG-----------VKRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             EEEEEETTTTEEEEEETTS-----------SSEEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             cEEEEecCCCeEEEEeCCC-----------CeEEEEEeCCCCCcceEEEecCCC-CEEEecCCCCCeEEEEecCCCceEE
Confidence            4455555678899999843           111111222334578899988652 344443233 678888886433322


Q ss_pred             eee-cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc
Q 012996          214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM  291 (451)
Q Consensus       214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~  291 (451)
                      .+. .-.....|++++.+..|+.+. ..+.|..+++.....       ..+......-....+|++..+.++++-...+.
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-------~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~  624 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA  624 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTTE
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-------EEEecCCCccCCCCEEEEeCCEEEEEECCCCE
Confidence            222 225688999998777777664 456899999876431       11211111223445666654556666667788


Q ss_pred             EEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996          292 VRVWDPITHNIVRMFRLAKGPVNNILVV  319 (451)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (451)
                      |...|..+++.+..+.........|++.
T Consensus       625 I~~~dk~tG~~~~~l~~~l~~P~~i~v~  652 (791)
T 3m0c_C          625 IFSANRLTGSDVNLLAENLLSPEDMVLF  652 (791)
T ss_dssp             EEEEETTTCCCCEEEECSCSCCCCEEEE
T ss_pred             EEEEeCCCCcceEEeecCCCCceeEeee
Confidence            9999988887777765444344455544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.45  E-value=0.00081  Score=61.31  Aligned_cols=219  Identities=10%  Similarity=-0.031  Sum_probs=129.5

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC----cee-eeecCCCCeeEEE
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----QVE-VKSLPAEPIKPIA   87 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~----~~~-~~~~~~~~v~~~~   87 (451)
                      ..|+..|+........+.    ....+..++  |.+.+..|..+....+.|..++.+..    ... ...........++
T Consensus        92 ~~I~~i~l~~~~~~~~~~----~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla  165 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  165 (400)
T ss_dssp             TEEEEECTTSCSCEEEEC----SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred             ceeEEEccCCcceeEecc----ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence            578888887654443332    234566677  98876666655444488999988752    122 2222345678899


Q ss_pred             ECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhccc
Q 012996           88 ANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRAS  164 (451)
Q Consensus        88 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~  164 (451)
                      +.+ .+++.++-...+.|.+.++........+.........|++.|.+..|+.+..  .+.|...++..           
T Consensus       166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-----------  234 (400)
T 3p5b_L          166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-----------  234 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-----------
T ss_pred             EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-----------
Confidence            987 4555556566788999998655443334434456789999996555555442  36788888732           


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCEEEEEeCCCc
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                      ..........-....+|++++.+. .+.++-+..+.|..+|+...........   -.....+++ ..+.++++-...+.
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~  312 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEA  312 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCS
T ss_pred             CccEEEEECCCCceEEEEEEeCCC-EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCe
Confidence            111111122234668899997662 4445555677899999864333222221   133456666 23445555556678


Q ss_pred             EEEEEccCC
Q 012996          242 IYIAALNAE  250 (451)
Q Consensus       242 i~i~d~~~~  250 (451)
                      |..+|..++
T Consensus       313 V~~~~~~~G  321 (400)
T 3p5b_L          313 IFSANRLTG  321 (400)
T ss_dssp             EEEEESSSC
T ss_pred             EEEEEcCCC
Confidence            888886554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.44  E-value=0.0004  Score=61.49  Aligned_cols=267  Identities=10%  Similarity=0.030  Sum_probs=141.8

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCce-eeeec----CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSL----PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      ..+.++.  |.+.+..+++ +.. |.| +...+.++. .....    ....+.+|.|.+ +..+++ +..|.|+. ....
T Consensus        36 ~~~~~v~--~~~~~~~~~~-G~~-g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           36 ATILDMS--FIDRHHGWLV-GVN-ATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDG  107 (327)
T ss_dssp             SCEEEEE--ESSSSCEEEE-ETT-TEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESST
T ss_pred             CcEEEEE--ECCCCcEEEE-cCC-CeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCC
Confidence            3566666  7666666664 444 655 333443321 11111    234688999986 454554 45564443 2222


Q ss_pred             Ccceeeec---cccCCeeEEEEccCCcEEEEeeCCCcE-EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996          112 GRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCV-RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (451)
Q Consensus       112 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (451)
                      |+.-....   .+.+.+..+.+.+++..++++ .+|.| +-.|-            ..........+...+..+.+.+++
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg------------G~tW~~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS------------GKNWQALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST------------TSSEEEEECSCCCCEEEEEECTTS
T ss_pred             CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC------------CCCCEEeecCCCcceEEEEEcCCC
Confidence            33322221   233557788887777666555 45544 32332            111111223345577888887765


Q ss_pred             CeeEEEEeeCCCcEEE-EEc--CCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996          188 VSATIVSASEDRTCKV-WSL--LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~i-wd~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                        .+++.+. +|.+.. +|-  .+-+.+. ......+..+.+.+++..+ +++.+|.+++.+.+.+.      .+..+..
T Consensus       175 --~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~------tW~~~~~  243 (327)
T 2xbg_A          175 --EYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE------NWGELLS  243 (327)
T ss_dssp             --CEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE------EECCCBC
T ss_pred             --cEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC------eeEeccC
Confidence              5665554 454443 442  1222221 1245678889999988755 45567887776422111      0111111


Q ss_pred             e-ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          265 L-SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       265 ~-~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      - ..+...+.++.+.+ +.+++++ .+|.| ++..+.++.-..+..   ....+.++.|.+++. ++.++.+|.+.-++
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            0 01224578888888 6666655 47766 455555655554442   245688999986665 55556778765544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.39  E-value=0.0017  Score=62.67  Aligned_cols=113  Identities=8%  Similarity=-0.108  Sum_probs=71.2

Q ss_pred             ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcc
Q 012996           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRL  114 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~  114 (451)
                      ....++  +.+.+..|..+....+.|.+.+.+........ ........|++.|.+.+|.....  .+.|...++. |..
T Consensus        85 ~P~GlA--vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~  161 (619)
T 3s94_A           85 SPDGLA--CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSS  161 (619)
T ss_dssp             CEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCS
T ss_pred             CcCeEE--EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCc
Confidence            344555  77766655555544489999999876543332 34456789999997555554443  3567777764 433


Q ss_pred             eeee-ccccCCeeEEEEccCCcEEEEe-eCCCcEEEeeCcc
Q 012996          115 LKKW-HAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLLT  153 (451)
Q Consensus       115 ~~~~-~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~  153 (451)
                      ...+ ...-.....|++++++..|+.+ ...+.|..+|+..
T Consensus       162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            3333 3344567899999866555554 4466788888853

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.37  E-value=0.0011  Score=64.15  Aligned_cols=224  Identities=7%  Similarity=-0.071  Sum_probs=138.6

Q ss_pred             ccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-E
Q 012996           61 GSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-F  136 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  136 (451)
                      +.|+..++++........  .-..+..|+|++.+..| .+-..++.|..+++........+.........+++.+.+. +
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L   94 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL   94 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence            678888887655432221  23568899999865555 4545678899999865444333333334577899987544 4


Q ss_pred             EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceeee
Q 012996          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRN  214 (451)
Q Consensus       137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~  214 (451)
                      +++-...+.|.+.++...         ....+  ....-....++++.|..  ..|+.+.  ..+.|...++........
T Consensus        95 Y~tD~~~~~I~v~~~dG~---------~~~~l--~~~~l~~P~~iavdp~~--G~lY~tD~g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A           95 YWADTGTNRIEVSKLDGQ---------HRQVL--VWKDLDSPRALALDPAE--GFMYWTEWGGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             EEEETTTTEEEEEETTST---------TCEEE--ECSSCCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EEEECCCCEEEEEecCCC---------cEEEE--EeCCCCCcccEEEccCC--CeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence            455555678999988431         11111  11233456789998754  3444444  256788888754433332


Q ss_pred             eecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEE
Q 012996          215 IVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR  293 (451)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~  293 (451)
                      ...-.....+++++++..|+.+. ..+.|..+|+.....       +   .+........++++..+.++++-...+.|.
T Consensus       162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~~~ly~tD~~~~~I~  231 (628)
T 4a0p_A          162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQDYIYWTDWSRRSIE  231 (628)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred             ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEECCEEEEecCCCCEEE
Confidence            33345678999999877776664 567899999876431       1   122233445677776555566666688899


Q ss_pred             EEeCCCCceEEEee
Q 012996          294 VWDPITHNIVRMFR  307 (451)
Q Consensus       294 iwd~~~~~~~~~~~  307 (451)
                      ..|..+++....+.
T Consensus       232 ~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          232 RANKTSGQNRTIIQ  245 (628)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCCceEEEe
Confidence            99987776555544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.36  E-value=0.00057  Score=60.11  Aligned_cols=221  Identities=11%  Similarity=0.017  Sum_probs=129.1

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce--eeeecCCCCeeEEEECC
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAANS   90 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~--~~~~~~~~~v~~~~~~~   90 (451)
                      ..|+..|+........+..  ........++  |.+.+..|..+...++.|..++.+....  ............+++.+
T Consensus        13 ~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVV--GGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEE--EEEEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             CeEEEEECCCCceEEEEEe--cCCCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            5799999876531111110  0112344556  8887666655544448999999876532  12222234567889987


Q ss_pred             -CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccc
Q 012996           91 -HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLY  167 (451)
Q Consensus        91 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~  167 (451)
                       .+++.++-...+.|.++++........+.........+++.|.+..|+.+.  ..+.|...++..          .. .
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG----------~~-~  157 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG----------SS-R  157 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS----------CS-C
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC----------CC-e
Confidence             455555556677899999764433323334445678999998655555554  256788877632          11 1


Q ss_pred             eecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996          168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (451)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (451)
                      .......-....++++++++. .+.++-+..+.|..+|+.... ...+.  .......+++. .+..+++-...+.|..+
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~-~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~  234 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILAC  234 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCccEEEEeccCC-EEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEE
Confidence            111112233557899998652 555555667889999986432 22222  22345566664 33455555566788888


Q ss_pred             EccCCC
Q 012996          246 ALNAES  251 (451)
Q Consensus       246 d~~~~~  251 (451)
                      +..++.
T Consensus       235 ~~~~G~  240 (318)
T 3sov_A          235 NKYTGE  240 (318)
T ss_dssp             ETTTCC
T ss_pred             ECCCCC
Confidence            886553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.35  E-value=0.00011  Score=67.72  Aligned_cols=233  Identities=11%  Similarity=0.047  Sum_probs=132.8

Q ss_pred             EEecceEeec--cCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---C-CEEEEEcCCCc
Q 012996           40 ACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G-DIYMWEVASGR  113 (451)
Q Consensus        40 ~~~~~~~~~~--~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~  113 (451)
                      ..++  +.|+  ...|.++... +.|+.++..++..............++++++|+++++-...   . .+...+...+.
T Consensus       142 ~gva--vd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          142 WRMM--FDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CEEE--ECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             ceEE--EccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3444  7774  3334444443 78999998777766555555678999999999955543321   1 13333322221


Q ss_pred             ce-eeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee-
Q 012996          114 LL-KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA-  190 (451)
Q Consensus       114 ~~-~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-  190 (451)
                      .. ..+. .......++++| ++.++++-..++.|..++..++..        ...+.... ....-..+++++++  + 
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~--------~~~~~~~~-~~~~~~~ia~dpdG--~~  286 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL--------TEEEVMMD-TKGSNFHIVWHPTG--DW  286 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE--------EEEEEECS-CCSSCEEEEECTTS--SE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE--------EEEEeccC-CCCCcccEEEeCCC--CE
Confidence            10 1221 234457789999 677666666678899999853210        00111111 11223468999988  5 


Q ss_pred             EEEEeeCCCcEEEEEcC--CCcee--eeeec----------------ccceeEEEE---------CCCCCEEEEEeCCCc
Q 012996          191 TIVSASEDRTCKVWSLL--KGRLL--RNIVF----------------PSVIDAIAL---------DPAEHVFYAGSRDGS  241 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~--~~~~~--~~~~~----------------~~~i~~~~~---------~~~~~~l~~~~~dg~  241 (451)
                      ++++-...+.|+.+++.  ++...  ..+..                -.....+++         .+++.++++-...+.
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence            55555567889998865  23211  11110                123567888         777777777677788


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeecc------------------CCcceeEEEEe-c-CCEEEEEcCCCcEEEEeCC
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSD------------------HSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~-~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      |+.++... .          +.++.+                  .-.....|+++ + +.++++-..++.|+.++++
T Consensus       367 I~~~~~~G-~----------v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          367 VRVLTPEG-R----------VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEECTTS-E----------EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEECCCC-C----------EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            99887532 1          111111                  12346788888 4 5555555567778877653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.00023  Score=65.90  Aligned_cols=252  Identities=10%  Similarity=0.020  Sum_probs=142.2

Q ss_pred             CeeEEEECC-CCcEE-EEeccCCCEEEEEcCCCcceeeecc---ccCCeeEEEE-------ccCCcEEEEeeCCC-c---
Q 012996           82 PIKPIAANS-HGTYI-AGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVF-------SEDGSFLISGSEDG-C---  145 (451)
Q Consensus        82 ~v~~~~~~~-~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~s~~~dg-~---  145 (451)
                      ....|+|+| ++..| ++-...+.|++.|+..+........   .......++|       ++++.+|+++...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 34444 4434346799999887765544432   1235789999       99998777666554 2   


Q ss_pred             ---EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-------CCce----
Q 012996          146 ---VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-------KGRL----  211 (451)
Q Consensus       146 ---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~----  211 (451)
                         |.+++...... .. .......+..+    .....+++++++. .++++-..++.|..+|+.       ++..    
T Consensus       220 ~~~V~~i~r~~~G~-~~-~~~~~~~v~~~----~~p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          220 SPSVYIIKRNADGT-FD-DRSDIQLIAAY----KQCNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             EEEEEEEECCTTSC-CS-TTSCEEEEEEE----SCCCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CceEEEEecCCCCc-ee-ecccceeeccC----CCceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeeccc
Confidence               55555321000 00 00000111111    1234667777432 566677788889999987       5543    


Q ss_pred             -------eee-ee--cccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeee---cc---------C
Q 012996          212 -------LRN-IV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL---SD---------H  268 (451)
Q Consensus       212 -------~~~-~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~---------~  268 (451)
                             ... +.  .......++|+|++++|+++ +..+.|+.++..........  ...+.-.   .+         .
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~--~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT--PYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC--CEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc--cEEecCCCCCCcccCCcccccc
Confidence                   112 22  23446789999999976655 45678998776543210000  0000000   00         1


Q ss_pred             Cccee-EEEEe-------c-CCEEEEEcCCCcEEEEeCCCCceEEEeecC------------------------CCCeeE
Q 012996          269 SKAVT-CLAYS-------T-GDLLISGSEDGMVRVWDPITHNIVRMFRLA------------------------KGPVNN  315 (451)
Q Consensus       269 ~~~v~-~~~~~-------~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~  315 (451)
                      -.... .++..       + +.++++-.....|+.++ .++. +.++.+.                        -..-..
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g  448 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG  448 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence            12234 45554       5 66777767788899999 4563 4444332                        113568


Q ss_pred             EEEEec-CceeeeccCCCCccccccCCCCC
Q 012996          316 ILVVRR-PLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       316 l~~s~~-~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      |+++++ |.++++=+....|+.++..+...
T Consensus       449 Iavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          449 LVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence            899986 66666656667788777765443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.00018  Score=66.37  Aligned_cols=151  Identities=8%  Similarity=-0.003  Sum_probs=94.8

Q ss_pred             EEecceEee-ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc-CC----CEEEEEcCCCc
Q 012996           40 ACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-SG----DIYMWEVASGR  113 (451)
Q Consensus        40 ~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~  113 (451)
                      ..++  ++| ++..|.++... +.|+.+|.....+............|+|++++++|+++.. ++    .+.+++ ..+.
T Consensus       140 ~~la--vdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~  215 (430)
T 3tc9_A          140 VWLS--FDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG  215 (430)
T ss_dssp             CEEE--EETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred             CEEE--ECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence            3445  786 45555555554 7899999988776555555667899999999996655543 22    233344 3443


Q ss_pred             ce--eeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          114 LL--KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       114 ~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      ..  ..+. .......++++| ++.++++-..++.|..++.....         ...+.... .......+++++++  +
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---------~~~~~~~~-~~~~P~gia~~pdG--~  282 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---------TTPLFTIQ-DSGWEFHIQFHPSG--N  282 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---------EEEEEECS-SSSCCEEEEECTTS--S
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---------EEEEEEcC-CCCcceeEEEcCCC--C
Confidence            32  2232 234467889999 67766666677899999985311         00111111 12345789999988  6


Q ss_pred             -EEEEeeCCCcEEEEEcC
Q 012996          191 -TIVSASEDRTCKVWSLL  207 (451)
Q Consensus       191 -~l~s~~~d~~i~iwd~~  207 (451)
                       ++++-...+.|..++..
T Consensus       283 ~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEEETTTTEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEeCC
Confidence             55555677889998765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.30  E-value=5.5e-05  Score=75.23  Aligned_cols=194  Identities=15%  Similarity=0.139  Sum_probs=107.7

Q ss_pred             CeeEEEEC-CCCcEEEEecc-CC----CEEEEEcCCC-cceee-eccccCCeeEEEEccCCcEEEEeeCC-----CcEEE
Q 012996           82 PIKPIAAN-SHGTYIAGGGQ-SG----DIYMWEVASG-RLLKK-WHAHYRAVTCLVFSEDGSFLISGSED-----GCVRI  148 (451)
Q Consensus        82 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~v  148 (451)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+.. +.   .....+.|+||++.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57788999 99998886533 22    4999999988 63321 21   123568899999888777665     25777


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCc-ee--eeee--cccc
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGR-LL--RNIV--FPSV  220 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~-~~--~~~~--~~~~  220 (451)
                      +++.+...       ....+... .......++.|++++  ++|+..+   ....|.++|+.++. ..  ..+.  ....
T Consensus       252 ~~lgt~~~-------~~~lv~~~-~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          252 HVMGKLQS-------EDVCLYEE-HNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             EETTSCGG-------GCEEEEEC-CCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             EECCCCch-------hcEEEEec-CCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence            77754211       01111111 122345678899988  6665544   23468888987752 12  2222  2334


Q ss_pred             eeEEEECCCCCEEEEEeCC--C--cEEEEEccCCCCCCCCCCceeeee-eccCCc--ceeEEEEecCCEEEEEcCCCc--
Q 012996          221 IDAIALDPAEHVFYAGSRD--G--SIYIAALNAESPSTSSYGMHIIGS-LSDHSK--AVTCLAYSTGDLLISGSEDGM--  291 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~l~s~~~dg~--  291 (451)
                      ..++.|+..+.+++....+  +  .|..+++.+..      .+.   . +..|..  .+..+.+..+.++++...+|.  
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~------~~~---~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~  392 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS------DWS---HVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTR  392 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT------CCC---CEEECCCSSEEEEEEEECSSEEEEEEEETTEEE
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc------cce---eeEECCCCCcEEEEEEEECCEEEEEEEeCCEEE
Confidence            4555554444444444443  2  56666765421      011   1 222333  344555543555666667775  


Q ss_pred             EEEEeC
Q 012996          292 VRVWDP  297 (451)
Q Consensus       292 i~iwd~  297 (451)
                      |.++++
T Consensus       393 l~~~dl  398 (751)
T 2xe4_A          393 IWTMMA  398 (751)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            555665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.30  E-value=0.0017  Score=57.46  Aligned_cols=230  Identities=12%  Similarity=0.057  Sum_probs=123.6

Q ss_pred             CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee----cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      ..+..+.  |.+ +..++ ++.. +.|.. ..+.++--...    .....+..+.+.+++..++++. +|.|..- ...|
T Consensus        80 ~~~~~i~--~~~-~~~~~-~g~~-g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S-~DgG  151 (327)
T 2xbg_A           80 YRFNSVS--FQG-NEGWI-VGEP-PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRT-KDSG  151 (327)
T ss_dssp             CEEEEEE--EET-TEEEE-EEET-TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEE-SSTT
T ss_pred             ccEEEEE--ecC-CeEEE-EECC-CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEE-cCCC
Confidence            3566666  765 44433 3444 54443 33333321111    1234577888877777777654 5554321 1223


Q ss_pred             cceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEE-eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996          113 RLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (451)
Q Consensus       113 ~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  190 (451)
                      +.-.. ...+...+..+.+.+++.+++.+. +|.+.. +|-..         .....+  -......+..+.+.+++  .
T Consensus       152 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG---------~tW~~~--~~~~~~~~~~~~~~~~g--~  217 (327)
T 2xbg_A          152 KNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQ---------TAWEPH--NRTTSRRLHNMGFTPDG--R  217 (327)
T ss_dssp             SSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTC---------SSCEEE--ECCSSSCEEEEEECTTS--C
T ss_pred             CCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCC---------CceeEC--CCCCCCccceeEECCCC--C
Confidence            32222 234456788999999888776664 444433 33200         111112  12344567788887665  4


Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          191 TIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                       ++.++.+|.+++.+...++.-..+..     ...+.++.+.+++..++++. +|.|+ +..+.+.      .+..+...
T Consensus       218 -~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~------tW~~~~~~  288 (327)
T 2xbg_A          218 -LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQ------TWQQDVDV  288 (327)
T ss_dssp             -EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTS------SCEECGGG
T ss_pred             -EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCc------ccEEcCcc
Confidence             44556678877764333433333321     23578899998777666554 66663 3333332      12222211


Q ss_pred             ccCCcceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996          266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~  297 (451)
                      ..+...+.++.|.++..+++++.+|.|.-++-
T Consensus       289 ~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          289 KKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             TTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             CCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            12345678888877555777778998877663

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.21  E-value=0.005  Score=59.51  Aligned_cols=179  Identities=7%  Similarity=-0.064  Sum_probs=98.2

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEEC
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAAN   89 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~   89 (451)
                      .++.|..+++........+......+.++   +  +.+.+..|..+....+.|.+.+++........ ........|++.
T Consensus        57 ~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl---A--vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavd  131 (628)
T 4a0p_A           57 SLKTISRAFMNGSALEHVVEFGLDYPEGM---A--VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALD  131 (628)
T ss_dssp             TTTEEEEEETTSCSCEEEECSSCSCCCEE---E--EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEE
T ss_pred             CCCeEEEEECCCCCcEEEEeCCCCCcceE---E--EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEc
Confidence            45666666655333222222222233333   3  55555545444443488999998765543322 334567899999


Q ss_pred             CCCcEEEEec--cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe-eCCCcEEEeeCcchhhhhhhhccccc
Q 012996           90 SHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHL  166 (451)
Q Consensus        90 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~  166 (451)
                      |...+|....  ..+.|...++.... ...+-........|++++++..|+.+ ...+.|..+|+...         ...
T Consensus       132 p~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~---------~~~  201 (628)
T 4a0p_A          132 PAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL---------NRE  201 (628)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCE
T ss_pred             cCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC---------ceE
Confidence            8655555444  24678878765433 33333345667899999976666555 44678888888431         111


Q ss_pred             ceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc
Q 012996          167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR  210 (451)
Q Consensus       167 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  210 (451)
                      .   +........++++.. +  .++++-...+.|...|..+++
T Consensus       202 v---~~~~l~~P~glav~~-~--~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          202 V---IADDLPHPFGLTQYQ-D--YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             E---EEECCSCEEEEEEET-T--EEEEEETTTTEEEEEETTTCC
T ss_pred             E---eeccCCCceEEEEEC-C--EEEEecCCCCEEEEEECCCCC
Confidence            1   111222334555543 2  455555456667777755443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.00069  Score=62.70  Aligned_cols=240  Identities=9%  Similarity=0.081  Sum_probs=132.2

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceE-------eeccCcccCCCCCCc------cEEEEECCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-------LASSQLREQPSASSG------SILYWSWSK   70 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~~~~~d~g------~i~vw~~~~   70 (451)
                      ++++.. ..+.|++.|+.++.....+............++  |       .++|..|.++...++      .|.+.+...
T Consensus       154 Lyv~~~-~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~  230 (496)
T 3kya_A          154 LYICYD-GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA  230 (496)
T ss_dssp             EEEEEE-TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT
T ss_pred             EEEEEC-CCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC
Confidence            344444 456788899887666544433222344567777  8       999986666655422      266665333


Q ss_pred             -Ccee-----eeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcC-------CCcc-----------eee-ec-cccC
Q 012996           71 -PQVE-----VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA-------SGRL-----------LKK-WH-AHYR  123 (451)
Q Consensus        71 -~~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-------~~~~-----------~~~-~~-~~~~  123 (451)
                       +...     ...........++++| ++.++++-..++.|..+|+.       ++..           ... +. +...
T Consensus       231 ~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~  310 (496)
T 3kya_A          231 DGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS  310 (496)
T ss_dssp             TSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred             CCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence             1221     0111123456888999 45556666677889999987       4543           112 11 2234


Q ss_pred             CeeEEEEccCCcEEEEe-eCCCcEEEeeCcchhhhhhhhcccccceec--ccC---------CcCcee-EEEEeec----
Q 012996          124 AVTCLVFSEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHS--FTG---------HTLRIT-DIVIGYG----  186 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~i~-~i~~~~~----  186 (451)
                      ....++|+|++++|+.+ +..+.|+.++.........   ........  ..+         .-.... .++....    
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~---~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~  387 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI---TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTG  387 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC---CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec---ccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccc
Confidence            46799999999964444 5567888866532100000   00000000  000         111233 3444310    


Q ss_pred             -CCeeEEEEeeCCCcEEEEEcCCCceeeeee-c------------------------ccceeEEEECCC-CCEEEEEeCC
Q 012996          187 -GVSATIVSASEDRTCKVWSLLKGRLLRNIV-F------------------------PSVIDAIALDPA-EHVFYAGSRD  239 (451)
Q Consensus       187 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~------------------------~~~i~~~~~~~~-~~~l~~~~~d  239 (451)
                       ..+.++++-...++|+.++ .++. +.++. .                        -.....++++++ +.++++=...
T Consensus       388 ~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N  465 (496)
T 3kya_A          388 EEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG  465 (496)
T ss_dssp             SCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred             cCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence             2236666667788999998 4553 33332 1                        023568899886 6655555667


Q ss_pred             CcEEEEEccCCC
Q 012996          240 GSIYIAALNAES  251 (451)
Q Consensus       240 g~i~i~d~~~~~  251 (451)
                      .+|+.+++....
T Consensus       466 ~rIrki~~~~~~  477 (496)
T 3kya_A          466 HTIRTISMEQEE  477 (496)
T ss_dssp             TEEEEEEECCCC
T ss_pred             CEEEEEECCCCc
Confidence            789999887653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.17  E-value=0.0099  Score=61.60  Aligned_cols=306  Identities=13%  Similarity=0.099  Sum_probs=159.3

Q ss_pred             EEeecCCC-CCCeEEEECccCceeeeeecC-CCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceee---e
Q 012996            4 LIASSSVA-DTGIGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV---K   76 (451)
Q Consensus         4 ~l~s~~~~-dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~---~   76 (451)
                      ++|.|. . |++|+|+++.+.+.+...... ...+..+..+.  + ....+|.++-.| |.+.-+.++  ++....   .
T Consensus       573 ~~aVg~-~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~--~-~~~~~L~igl~d-G~l~~~~~d~~tg~l~d~r~~  647 (1158)
T 3ei3_A          573 LCAIGL-WTDISARILKLPSFELLHKEMLGGEIIPRSILMTT--F-ESSHYLLCALGD-GALFYFGLNIETGLLSDRKKV  647 (1158)
T ss_dssp             EEEEEE-TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE--E-TTEEEEEEEETT-SEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEEE-CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE--e-CCCcEEEEEeCC-CeEEEEEEcCCCCccccceeE
Confidence            567777 5 999999999987766543322 12344554444  3 334567766666 888766654  343332   2


Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE-EEEccC--CcEEEEeeCCCcEEEeeCcc
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-LVFSED--GSFLISGSEDGCVRIWSLLT  153 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~--~~~l~s~~~dg~i~vwd~~~  153 (451)
                      .....++.-..+...+..-+.+..+....+|.- .++.... .-....+.. ..|+..  ..-++..+ ++.++|..+.+
T Consensus       648 ~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~-~~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~  724 (1158)
T 3ei3_A          648 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS-NHKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDE  724 (1158)
T ss_dssp             ECCSSCCEEEEEESSSCEEEEEESSSCEEEEES-SSSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECC
T ss_pred             EcCCCceEEEEEeeCCceeEEEECCCCEEEEEc-CCceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecc
Confidence            223456655555444433222233445555543 3332221 112223333 345431  22344333 44688887744


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-------------------------------------
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-------------------------------------  196 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-------------------------------------  196 (451)
                      ..         ...+..+. -...+..+++++..  +.++.+.                                     
T Consensus       725 ~~---------~~~~~~ip-L~~Tprri~y~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1158)
T 3ei3_A          725 IQ---------KLHIRTVP-LYESPRKICYQEVS--QCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS  792 (1158)
T ss_dssp             SS---------SEEEEEEE-CSSEEEEEEEEGGG--TEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred             cC---------CeeEEEEe-CCCCceEEEEcCCC--CEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence            21         11111111 12234444554433  1111111                                     


Q ss_pred             ------------CCCcEEEEEcCCCceeeeeec--ccceeEEE---ECC-CCCEEEEEe----------CCCcEEEEEcc
Q 012996          197 ------------EDRTCKVWSLLKGRLLRNIVF--PSVIDAIA---LDP-AEHVFYAGS----------RDGSIYIAALN  248 (451)
Q Consensus       197 ------------~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~---~~~-~~~~l~~~~----------~dg~i~i~d~~  248 (451)
                                  .-+.|++.|..+.+.+..+..  ...+.+++   |.. ...++++|+          ..|.|++|++.
T Consensus       793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred             ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence                        113578888888887776663  34455544   332 247888887          35789999997


Q ss_pred             CCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (451)
                      ..+       .+.+... ...++|++++--.| +|++|- ..+|++|++...+.++.-..+-..|..+.....+.+++.|
T Consensus       873 ~~k-------L~lv~~~-~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vg  942 (1158)
T 3ei3_A          873 DGK-------LQTVAEK-EVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVG  942 (1158)
T ss_dssp             TTE-------EEEEEEE-EESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEE
T ss_pred             CCE-------EEEEEEE-EcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEE
Confidence            321       2333322 24678888765445 555443 5789999998765554211112224444444567788887


Q ss_pred             cCCCCcccccc
Q 012996          329 SFSNPHTSSRR  339 (451)
Q Consensus       329 s~d~~i~iw~~  339 (451)
                      ..-..+.+...
T Consensus       943 D~~~Sv~~~~y  953 (1158)
T 3ei3_A          943 DLMRSVLLLAY  953 (1158)
T ss_dssp             ESSBCEEEEEE
T ss_pred             EhhheEEEEEE
Confidence            76666655543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.16  E-value=0.0036  Score=55.99  Aligned_cols=216  Identities=11%  Similarity=0.128  Sum_probs=137.9

Q ss_pred             CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (451)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~   91 (451)
                      +..|.|-|+..+..+.+...  .....|      .+|..+.+|.-..  .++.|+|+++..........+.|..=.|-.+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi--~AdsAI------MnP~~~iiALrag--~~lQiFnle~K~klks~~~~e~VvfWkWis~  116 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI--SADSAI------MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC--CCSEEE------ECSSSSCEEEEET--TEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred             CCeEEEEECCCCCcceeccc--ccceee------eCCCCcEEEEecC--CeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence            34677888777655432211  111111      6677777776653  7999999998887666656678888888654


Q ss_pred             CcEEEEeccCCCEEEEEcCCC-cceeeecccc----CCeeEEEEccCCcEEEEeeC-------CCcEEEeeCcchhhhhh
Q 012996           92 GTYIAGGGQSGDIYMWEVASG-RLLKKWHAHY----RAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECE  159 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~  159 (451)
                      .. |+..+. ..|+-|++... .+.+.+..|.    ..|..-..+++.++++..|-       .|.+.+|..+.      
T Consensus       117 ~~-l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------  188 (494)
T 1bpo_A          117 NT-VALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------  188 (494)
T ss_dssp             TE-EEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT------
T ss_pred             Ce-EEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc------
Confidence            44 444443 47999999643 5566665543    45666777888888774332       46788998843      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCe-eEEEEeeC---CCcEEEEEcCCC---cee-----eeeec-----cccee
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASE---DRTCKVWSLLKG---RLL-----RNIVF-----PSVID  222 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~~~---d~~i~iwd~~~~---~~~-----~~~~~-----~~~i~  222 (451)
                            ...+.+.+|...-..+.+..+... .+++.+..   .+.++|.++...   ...     ..+..     ..-..
T Consensus       189 ------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv  262 (494)
T 1bpo_A          189 ------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (494)
T ss_dssp             ------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred             ------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence                  344556777766655544322211 33443433   278999998543   111     11111     23456


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      ++..++.-..++.-+.-|.|++||+.++.
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEecccCCEEEEEecCceEEEEecccce
Confidence            78889988999999999999999999974

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.09  E-value=0.001  Score=58.12  Aligned_cols=200  Identities=13%  Similarity=0.214  Sum_probs=118.6

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCc---ccCCCCC--CccEEEEECC--CCceeeee
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL---REQPSAS--SGSILYWSWS--KPQVEVKS   77 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---l~~~~~d--~g~i~vw~~~--~~~~~~~~   77 (451)
                      ++... ..+.+.+||+ +|+.+..+..  +..+.|-... .|.-.|+.   ++++..+  +++|.+|+++  +..+....
T Consensus        43 ii~t~-k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           43 LITTN-KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             EEEEE-TTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             EEEEc-CCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            33334 4678999999 8999988753  3334443221 13223332   3333443  4899999774  33322221


Q ss_pred             c------CC-CCeeEEEE--CCC-Cc-EEEEeccCCCEEEEEcC-------CCcceeeeccccCCeeEEEEccCCcEEEE
Q 012996           78 L------PA-EPIKPIAA--NSH-GT-YIAGGGQSGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLIS  139 (451)
Q Consensus        78 ~------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  139 (451)
                      .      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. .+.+..+...+....|+.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence            1      11 56777887  774 43 67888889999999983       3355666654 356788888888888999


Q ss_pred             eeCCCcEEEeeCcchhhhhhhhcccccceeccc-CC-cCceeEEEEeecCCee-EEEEee-CCCcEEEEEcC-CCceeee
Q 012996          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GH-TLRITDIVIGYGGVSA-TIVSAS-EDRTCKVWSLL-KGRLLRN  214 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~i~~~~~~~~~-~l~s~~-~d~~i~iwd~~-~~~~~~~  214 (451)
                      +-.+.-|..++.+...      ......+..+. ++ ...+..|++-+...+. +|++++ .+.++.+||.. +.+.+..
T Consensus       197 ~eEd~GIw~~da~p~~------~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDG------GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             EETTTEEEEEECSTTS------CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             ecccceEEEEeCCcCC------CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            9998665555542200      00122233221 22 3468888885433223 455444 67799999986 5555555


Q ss_pred             ee
Q 012996          215 IV  216 (451)
Q Consensus       215 ~~  216 (451)
                      |.
T Consensus       271 f~  272 (355)
T 3amr_A          271 FR  272 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.09  E-value=6.5e-05  Score=73.78  Aligned_cols=219  Identities=9%  Similarity=-0.041  Sum_probs=121.4

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC----Cceeeee-cCCCCeeEEE
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA   87 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~----~~~~~~~-~~~~~v~~~~   87 (451)
                      +.|+..++.+......+...    ..+..++  |.+.+..|..+....+.|..+++.+    ....... ........|+
T Consensus       386 ~~I~~id~~~~~~~~~~~~~----~~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNL----RNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCC----TTCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             cceEEEeCCCCcceeeeccC----cceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            57788887766554333322    2233444  8887666666554448999999875    2211111 1223456788


Q ss_pred             ECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-C-CcEEEeeCcchhhhhhhhccc
Q 012996           88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS  164 (451)
Q Consensus        88 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~  164 (451)
                      +.+. ++++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++..         ..
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG---------~~  530 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---------VD  530 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS---------CC
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC---------CC
Confidence            8854 455555456788999997654433333333345678999986555554432 2 6787777632         11


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCEEEEEeCCCc
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS  241 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~  241 (451)
                      ...+  ....-....+|++++.+. .++++-+..+.|..+++........+..   ......+++..+ .++++....+.
T Consensus       531 ~~~l--~~~~l~~PnGlavd~~~~-~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~  606 (699)
T 1n7d_A          531 IYSL--VTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA  606 (699)
T ss_dssp             CCEE--SCSSCSSCCCEEECTTTC-CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred             eeEE--EeCCCCCccEEEEeccCC-EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence            1111  111223456789987652 5556666678899999864322222211   122344555443 44445556678


Q ss_pred             EEEEEccCC
Q 012996          242 IYIAALNAE  250 (451)
Q Consensus       242 i~i~d~~~~  250 (451)
                      |..++..++
T Consensus       607 V~~~d~~~G  615 (699)
T 1n7d_A          607 IFSANRLTG  615 (699)
T ss_dssp             EEEEETTTE
T ss_pred             EEEEEccCC
Confidence            888886554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.08  E-value=0.0068  Score=60.10  Aligned_cols=218  Identities=9%  Similarity=-0.077  Sum_probs=123.0

Q ss_pred             CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC----c-eeeeecCCCCeeEEE
Q 012996           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----Q-VEVKSLPAEPIKPIA   87 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~----~-~~~~~~~~~~v~~~~   87 (451)
                      ..|+..++........+.    ....+..++  |.+....|..+....+.|+.+++...    . .............|+
T Consensus       404 ~~Ir~i~l~~~~~~~l~~----~~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             SSEEEECTTSCCCEEEEC----SCSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             cceeEeeccCCcceeeec----CCCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            467777776554433222    224455666  88765555554444488988888753    1 122222345677899


Q ss_pred             ECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhccc
Q 012996           88 ANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRAS  164 (451)
Q Consensus        88 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~  164 (451)
                      +.+.+. ++++-...+.|.+.++........+.........|++.|.+.+|+.+..  .+.|.+.++..           
T Consensus       478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-----------  546 (791)
T 3m0c_C          478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-----------  546 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-----------
T ss_pred             eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-----------
Confidence            987664 4455566788999998644433333334456889999997555555442  26788887732           


Q ss_pred             ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCEEEEE-eCCC
Q 012996          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAG-SRDG  240 (451)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~-~~dg  240 (451)
                      ......+...-....+|++.+... .++++-...+.|..+++........+..   -....+|++.  +..|+.. ...+
T Consensus       547 ~~~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~  623 (791)
T 3m0c_C          547 VDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINE  623 (791)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             CceEEEEeCCCCCceEEEEecCCC-eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCC
Confidence            111111222334678899986652 4444545567899999864433322221   1233455553  3344444 4556


Q ss_pred             cEEEEEccCC
Q 012996          241 SIYIAALNAE  250 (451)
Q Consensus       241 ~i~i~d~~~~  250 (451)
                      .|...+..++
T Consensus       624 ~I~~~dk~tG  633 (791)
T 3m0c_C          624 AIFSANRLTG  633 (791)
T ss_dssp             EEEEEETTTC
T ss_pred             EEEEEeCCCC
Confidence            7777776554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.06  E-value=0.0014  Score=56.86  Aligned_cols=158  Identities=8%  Similarity=0.034  Sum_probs=102.6

Q ss_pred             CCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceee-ecc----cc--CCeeEEEE---ccCCcEEEEee-------
Q 012996           80 AEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKK-WHA----HY--RAVTCLVF---SEDGSFLISGS-------  141 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~s~~-------  141 (451)
                      .--..+++|.+....| ++.-..|.|..|+...+..... +..    ..  ..+..|.|   .|+++++++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3445688998754444 5544789999999875543322 222    11  13578999   68887777543       


Q ss_pred             ------CCCcEEEeeCc---chhhhhhhhcccccceecccC-----------CcCceeEEEEeecCCeeEEEEeeCC-Cc
Q 012996          142 ------EDGCVRIWSLL---TVFEECESQRASHLYLHSFTG-----------HTLRITDIVIGYGGVSATIVSASED-RT  200 (451)
Q Consensus       142 ------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~~~l~s~~~d-~~  200 (451)
                            .+..|..||+.   ++.         ......+..           -.....+++..++|  +..++++.. +.
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~---------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G--naYVt~s~~~~~  160 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSK---------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG--NSYVAFALGMPA  160 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCC---------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS--CEEEEEEESSCE
T ss_pred             cccccCCCCEEEEEcCCcCCCCC---------EEEEecCccccccccccccccccCCceeEECCCC--CEEEeCCCCCCe
Confidence                  25779999986   321         111111111           11347788888877  788888888 88


Q ss_pred             EEEEEcCCCceeeeee--c-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          201 CKVWSLLKGRLLRNIV--F-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       201 i~iwd~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      |..++.... .+..+.  .     ....+.++++|++..|++....|.+..+|+..
T Consensus       161 I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          161 IARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            887776533 333222  1     12366899999999999887799999999884

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.02  E-value=0.0018  Score=56.38  Aligned_cols=221  Identities=10%  Similarity=0.061  Sum_probs=109.3

Q ss_pred             CCcEEEEec-cC-----CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCC-----CcEEEeeCcchhhh
Q 012996           91 HGTYIAGGG-QS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEE  157 (451)
Q Consensus        91 ~~~~l~~~~-~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~  157 (451)
                      ++.+++.|+ .+     ..+.+||+.+.+-..  .+.........+.  .++..++.|+.+     ..+.+||+.+... 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~-   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED-   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence            456667776 33     368899987664222  2221111112222  357777777765     3588888865210 


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCceeeeee--cccceeEEEECCCC
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAE  230 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~  230 (451)
                           .....+..+....... +++. .++  .+++.|+.+     ..+.+||+.+.+-...-.  .+..-.+++. .++
T Consensus        91 -----~~W~~~~~~p~~r~~~-~~~~-~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~  160 (301)
T 2vpj_A           91 -----GVWYSVAPMNVRRGLA-GATT-LGD--MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASG  160 (301)
T ss_dssp             -----CCCEEECCCSSCCBSC-EEEE-ETT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETT
T ss_pred             -----CeeEECCCCCCCccce-eEEE-ECC--EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECC
Confidence                 0022222221111111 1222 244  677777654     358899988765433222  1111122222 266


Q ss_pred             CEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCCCC
Q 012996          231 HVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH  300 (451)
Q Consensus       231 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  300 (451)
                      .+++.|+.+     ..+.+||+.+..       +..+..+....... ++....+.+++.|+.+     ..+.+||+.+.
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGA-GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccc-eEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            677777654     358888887653       23232222111111 2222236677777764     46899999876


Q ss_pred             ceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      +-...-..........+..-+++.++.|+.++
T Consensus       233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          233 SWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG  264 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             cEEECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence            54332222222222223334677778887664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.00  E-value=0.013  Score=56.49  Aligned_cols=280  Identities=11%  Similarity=-0.018  Sum_probs=145.8

Q ss_pred             EEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  118 (451)
                      ..++  +.++++.|..+....+.|...+++......... .......|++..+ .++.+-...+.|...|..+++....+
T Consensus       174 ~Gla--ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          174 NGLT--LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEEE--EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             cEEE--EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            3444  777666666555444788888887654332211 2233467777755 44555556678999998777543332


Q ss_pred             ccccCC-------------------------eeEEEEc-c-----------------CC--------cEEEEeeCCCcEE
Q 012996          119 HAHYRA-------------------------VTCLVFS-E-----------------DG--------SFLISGSEDGCVR  147 (451)
Q Consensus       119 ~~~~~~-------------------------v~~~~~~-~-----------------~~--------~~l~s~~~dg~i~  147 (451)
                      ......                         +..+++. |                 |+        .+|+.+ ..+.|+
T Consensus       251 ~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~  329 (619)
T 3s94_A          251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLR  329 (619)
T ss_dssp             CSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEE
T ss_pred             ecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceE
Confidence            211111                         1111111 1                 10        112221 123444


Q ss_pred             EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEE
Q 012996          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIAL  226 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~  226 (451)
                      ..++....        .......+. .-..+.++++.+... .++++-...+.|+.+++........+. .-.....+++
T Consensus       330 ~i~l~~~~--------~~~~~~~~~-~l~~~~~ld~d~~~~-~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv  399 (619)
T 3s94_A          330 RISLDTPD--------FTDIVLQLE-DIRHAIAIDYDPVEG-YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV  399 (619)
T ss_dssp             EEESSSTT--------CCCEECCCS-CCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred             EEecCCCc--------cceeEEecc-ccCccEEEEEEcCCC-eEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence            44442210        000011111 123456778876442 455555567889989886543322222 2246778999


Q ss_pred             CCCCCEE-EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc--CCCcEEEEeCCCCce
Q 012996          227 DPAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNI  302 (451)
Q Consensus       227 ~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~  302 (451)
                      ++.+..| ++-+..+.|.+.++.....       ..  .....-....+|++.| ...|..+.  ..+.|...++.....
T Consensus       400 D~~~~~lY~tD~~~~~I~v~~~~G~~~-------~~--l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~  470 (619)
T 3s94_A          400 DWVARNLYWTDTGTDRIEVTRLNGTMR-------KI--LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR  470 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-------EE--EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             ecccCcEEEEeCCCCcEEEEeCCCCeE-------EE--EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc
Confidence            8755544 4445678899999876421       11  1122345688999999 45555443  236677777653322


Q ss_pred             EEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccCCC
Q 012996          303 VRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGS  342 (451)
Q Consensus       303 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~~  342 (451)
                      .......-...+.|++++++..|..+. ..+.|...+..+.
T Consensus       471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence            222233345678999998776665553 3455666666554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.99  E-value=0.0023  Score=55.47  Aligned_cols=204  Identities=8%  Similarity=0.055  Sum_probs=123.4

Q ss_pred             ccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccC----C--cCceeEEEE---eecCC
Q 012996          119 HAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTG----H--TLRITDIVI---GYGGV  188 (451)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~--~~~i~~i~~---~~~~~  188 (451)
                      ........++.|++....|+.++ ..++|..|+....         ....+ .+.+    .  ...+.++.|   .+.+ 
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---------~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-   77 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---------SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-   77 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTC---------CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---------eEEEE-ecCCccccCCCcceeeEEEEeccCCCC-
Confidence            34444556899988544555554 7899999998531         11111 2221    1  123567888   4554 


Q ss_pred             eeEEEEee-------------CCCcEEEEEcC---CCceeeeeecc--------------cceeEEEECCCCCEEEEEeC
Q 012996          189 SATIVSAS-------------EDRTCKVWSLL---KGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       189 ~~~l~s~~-------------~d~~i~iwd~~---~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~  238 (451)
                       .++++..             .+..|..||+.   +++.+......              .....++..++|+..++++.
T Consensus        78 -rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~  156 (334)
T 2p9w_A           78 -RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL  156 (334)
T ss_dssp             -EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred             -cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC
Confidence             6766544             26789999999   78877766522              24789999999999999988


Q ss_pred             C-CcEEEEEccCCCCCCCCCCceeee-ee--ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCce--EEEee-cC-
Q 012996          239 D-GSIYIAALNAESPSTSSYGMHIIG-SL--SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--VRMFR-LA-  309 (451)
Q Consensus       239 d-g~i~i~d~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~~-  309 (451)
                      . +.|..++......       .... ..  .......+.|+++| +..|++....|.|..+|+.+...  +..-. +. 
T Consensus       157 ~~~~I~rV~pdG~~~-------~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~  229 (334)
T 2p9w_A          157 GMPAIARVSADGKTV-------STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDF  229 (334)
T ss_dssp             SSCEEEEECTTSCCE-------EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCC
T ss_pred             CCCeEEEEeCCCCEE-------eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCc
Confidence            8 8888777765421       1000 01  11223477999999 88888887799999999885432  21110 21 


Q ss_pred             --CCCeeEE-EEEecCce-eeeccCCCCccccccCC
Q 012996          310 --KGPVNNI-LVVRRPLY-LNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       310 --~~~v~~l-~~s~~~~~-l~~~s~d~~i~iw~~~~  341 (451)
                        ......| ..-.+|+. |++.+..+.+.+.+.++
T Consensus       230 ~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          230 GTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             CCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             ccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence              1123443 33456776 44444445444444433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.99  E-value=0.0056  Score=54.66  Aligned_cols=238  Identities=13%  Similarity=0.021  Sum_probs=124.3

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc--eeeec---cccCCeeEEEEccC---CcEEEEeeC-C-----CcE
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKWH---AHYRAVTCLVFSED---GSFLISGSE-D-----GCV  146 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----g~i  146 (451)
                      .....++|.|+|+++++ ...|.|++++  +++.  +..+.   ........|+|+|+   +..|+.+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45789999999996665 5568999998  4432  11111   22456789999998   445544433 2     567


Q ss_pred             EEeeCcchhhhhhhhcccccceeccc---CCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEEEEcCCC-
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKG-  209 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~-  209 (451)
                      ..|+......     ......+..+.   ........++|.+++  .+.++.+.             .|.|.-++.... 
T Consensus       108 ~r~~~~~~~~-----~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          108 VRLRHLGERG-----VLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             EEEEECSSCE-----EEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             EEEEeCCCCc-----CceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence            7777642100     00011111122   111123578999887  55555432             256666665420 


Q ss_pred             -----------ceeeeee-cccceeEEEECC-CCCEEEEEeCCCcE------EEEEccCCCCC-CC-------CC-Ccee
Q 012996          210 -----------RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSI------YIAALNAESPS-TS-------SY-GMHI  261 (451)
Q Consensus       210 -----------~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~~-~~-------~~-~~~~  261 (451)
                                 .....+. .......++|+| ++.++++-...+.+      .+.-+..+... ..       .. ...+
T Consensus       181 p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             CCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                       0111111 123467789999 55555443333321      12222222100 00       00 0122


Q ss_pred             eeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCce------EEEeecCCCCeeEEEEEecCceeeecc
Q 012996          262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNI------VRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       262 ~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      +..+ .+......++|..+.++++.-..+.|...++.....      ...+-.....+.++++.|||.++++..
T Consensus       261 ~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          261 LYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             SEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             eEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            2233 223456778885577777776777888887654321      122222246789999999997666643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.95  E-value=0.022  Score=59.14  Aligned_cols=131  Identities=12%  Similarity=0.094  Sum_probs=77.6

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--eecCCCCeeEEEECCC
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANSH   91 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~~   91 (451)
                      .|++.+...+..+..+....+  ..|...+    .++..++.+. . +.+.++.++.+....  .......|.|+++.|.
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~--~~I~~As----~n~~~vvva~-g-~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~  564 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQA--KNISVAS----CNSSQVVVAV-G-RALYYLQIHPQELRQISHTEMEHEVACLDITPL  564 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTC--CCCCEEE----ECSSEEEEEE-T-TEEEEEEEETTEEEEEEEEECSSCEEEEECCCC
T ss_pred             EEEEEECCCCeEEEEEECCCC--CEEEEEE----eCCCEEEEEE-C-CEEEEEEeeCCceeeecccCCCCceEEEEeecC
Confidence            466666555545545532211  1233222    2234455553 3 778888776544322  2223578999999863


Q ss_pred             ------CcEEEEecc-CCCEEEEEcCCCcceeeeccc-cCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCc
Q 012996           92 ------GTYIAGGGQ-SGDIYMWEVASGRLLKKWHAH-YRAVTCLVFS--EDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        92 ------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~  152 (451)
                            +.++++|.. |++|+|+++.+.+.+....-. .....++.+.  ....+|..|-.||.+.-+.+.
T Consensus       565 ~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          565 GDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             SSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             CCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence                  479999997 999999999876655432211 1234444443  234678899999998777653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.88  E-value=0.0033  Score=54.76  Aligned_cols=217  Identities=12%  Similarity=0.128  Sum_probs=109.8

Q ss_pred             ccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccC-----CCEEEEEcCCCc---ce--eeeccccCCeeEEE
Q 012996           61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR---LL--KKWHAHYRAVTCLV  129 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~---~~--~~~~~~~~~v~~~~  129 (451)
                      ..+.+||..+........ +...........++.+++.|+.+     ..+.+||..+.+   -.  ..+.........+.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~  110 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT  110 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence            478889988766443221 11111111222357777887755     459999988765   22  22221122222222


Q ss_pred             EccCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----C
Q 012996          130 FSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----R  199 (451)
Q Consensus       130 ~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~  199 (451)
                      +  +++.++.|+.++     .+.+||+.+.         ....+......... .+++ ..++  .+++.|+.+     .
T Consensus       111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~  175 (301)
T 2vpj_A          111 L--GDMIYVSGGFDGSRRHTSMERYDPNID---------QWSMLGDMQTAREG-AGLV-VASG--VIYCLGGYDGLNILN  175 (301)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETTTT---------EEEEEEECSSCCBS-CEEE-EETT--EEEEECCBCSSCBCC
T ss_pred             E--CCEEEEEcccCCCcccceEEEEcCCCC---------eEEECCCCCCCccc-ceEE-EECC--EEEEECCCCCCcccc
Confidence            2  577777777543     5778887542         12222211111111 1122 2244  677777654     4


Q ss_pred             cEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          200 TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       200 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      .+.+||+.+.+-...-.  .+..-.+++. -++.+++.|+.+     ..+.+||+.+..       +..+..+.......
T Consensus       176 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~  247 (301)
T 2vpj_A          176 SVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYV  247 (301)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSC
T ss_pred             eEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccce
Confidence            58899988765433222  1111112222 256677777664     468899987653       23332222211122


Q ss_pred             eEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996          273 TCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (451)
Q Consensus       273 ~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  301 (451)
                      . ++...+.+++.|+.+     ..|.+||+.+.+
T Consensus       248 ~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          248 G-ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             E-EEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             e-EEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            2 222236677777765     357788887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.88  E-value=0.0036  Score=54.56  Aligned_cols=218  Identities=11%  Similarity=0.139  Sum_probs=105.8

Q ss_pred             CcEEEEeccC----CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhhhhhh
Q 012996           92 GTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECES  160 (451)
Q Consensus        92 ~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~  160 (451)
                      +.+++.|+.+    ..+.+||+.+.+-..  .+......-..+.  -++..++.|+.++     .+.+||..+.      
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~------   87 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKD------   87 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTT------
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCC------
Confidence            4556666643    358888887664222  1211111111222  2577777887653     4778887542      


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee--cccceeEEEECCCCCEE
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVF  233 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l  233 (451)
                         ....+..+...... .+++. .++  .+++.|+.++     .+.+||+.+.+-...-.  .+..-.+++. -++.++
T Consensus        88 ---~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iy  159 (302)
T 2xn4_A           88 ---QWTSVANMRDRRST-LGAAV-LNG--LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLY  159 (302)
T ss_dssp             ---EEEEECCCSSCCBS-CEEEE-ETT--EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEE
T ss_pred             ---ceeeCCCCCccccc-eEEEE-ECC--EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEE
Confidence               11122111111111 11222 244  6777776553     57788987765433222  1111122222 256666


Q ss_pred             EEEeCC-------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996          234 YAGSRD-------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (451)
Q Consensus       234 ~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  301 (451)
                      +.|+.+       ..+.+||+.+..       +..+..+....... +++...+.+++.|+.+     ..+.+||+.+.+
T Consensus       160 v~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          160 AVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSC-EEEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCccccccc-cEEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            666542       358888887653       22222222211122 2222236777777764     368899988764


Q ss_pred             eEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996          302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (451)
Q Consensus       302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~  333 (451)
                      -...-.........-+...+++.++.|+.++.
T Consensus       232 W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~  263 (302)
T 2xn4_A          232 WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGS  263 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             EeeCCCCCCccccCeEEEECCEEEEECCcCCC
Confidence            33221111111122233346777788876643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.86  E-value=0.004  Score=54.26  Aligned_cols=216  Identities=13%  Similarity=0.216  Sum_probs=107.2

Q ss_pred             ccEEEEECCCCceeeeec-CCCCe-eEEEECCCCcEEEEeccC-----CCEEEEEcCCCccee--eeccccCCeeEEEEc
Q 012996           61 GSILYWSWSKPQVEVKSL-PAEPI-KPIAANSHGTYIAGGGQS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFS  131 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~  131 (451)
                      ..+..||..+........ +.... .+++ .-++.+++.|+.+     ..+.+||..+.+-..  .+.........+.+ 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence            468889988766443321 11111 1222 2267777888755     358899987664322  22211122222222 


Q ss_pred             cCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-------C
Q 012996          132 EDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-------R  199 (451)
Q Consensus       132 ~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-------~  199 (451)
                       ++..++.|+.++     .+.+||+.+.         ....+..+...... .+++. .++  .+++.|+.+       .
T Consensus       108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~  173 (302)
T 2xn4_A          108 -NGLLYAVGGFDGSTGLSSVEAYNIKSN---------EWFHVAPMNTRRSS-VGVGV-VGG--LLYAVGGYDVASRQCLS  173 (302)
T ss_dssp             -TTEEEEEEEECSSCEEEEEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEECCEETTTTEECC
T ss_pred             -CCEEEEEcCCCCCccCceEEEEeCCCC---------eEeecCCCCCcccC-ceEEE-ECC--EEEEEeCCCCCCCcccc
Confidence             577777777654     4677777542         12122111111111 12222 243  666666543       3


Q ss_pred             cEEEEEcCCCceeee--eecccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          200 TCKVWSLLKGRLLRN--IVFPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       200 ~i~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      .+.+||+.+.+-...  +..+..-.+++. -++.+++.|+.+     ..+.+||+.+..       +..+..+.......
T Consensus       174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~r~~~  245 (302)
T 2xn4_A          174 TVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA-------WRQVADMNMCRRNA  245 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSC
T ss_pred             EEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC-------EeeCCCCCCccccC
Confidence            588999887654332  221111122222 256777777654     368899987653       22222222111111


Q ss_pred             eEEEEecCCEEEEEcCCC-----cEEEEeCCCCc
Q 012996          273 TCLAYSTGDLLISGSEDG-----MVRVWDPITHN  301 (451)
Q Consensus       273 ~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~  301 (451)
                       +++...+.+++.|+.++     .+.+||+.+.+
T Consensus       246 -~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          246 -GVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             -EEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -eEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence             22222366777777654     47888877654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.78  E-value=0.019  Score=51.45  Aligned_cols=263  Identities=10%  Similarity=0.078  Sum_probs=154.6

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  140 (451)
                      ..|.|-|+.++....+..-.  --+.-.+|..+.+|.-. ...+.|+|+++...+..+.- ...|.--.|-.+. .|+-.
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~--AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lV  122 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV  122 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECC--CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEE
T ss_pred             CeEEEEECCCCCcceecccc--cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEE
Confidence            58999999876655443221  23445688888887755 57899999999888877753 3467677776544 44444


Q ss_pred             eCCCcEEEeeCcchhhhhhhhcccccceecccCC----cCceeEEEEeecCCeeEEEEee-------CCCcEEEEEcCCC
Q 012996          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG  209 (451)
Q Consensus       141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~  209 (451)
                      +. ..|.-|++..          ...+.+.+..|    ...|..-..+++.  ++++..+       -.|.+.+|....+
T Consensus       123 T~-taVyHWsi~~----------~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~  189 (494)
T 1bpo_A          123 TD-NAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK  189 (494)
T ss_dssp             CS-SEEEEEESSS----------SCCCEEEEECCGGGTTCEEEEEEECTTS--SEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             cC-CeeEEecccC----------CCCchhheecchhcccceEEEEEECCCC--CeEEEEeecccCCcccceEEEeecccc
Confidence            43 4899999953          22333434333    2345444455554  6666433       2467889998755


Q ss_pred             ceeeeeecccceeEEEECCC---CCEEEEEeC---CCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEec-
Q 012996          210 RLLRNIVFPSVIDAIALDPA---EHVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST-  279 (451)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-  279 (451)
                      .....-.|-..-..+.+..+   ...++.+..   .+++++.++.........+..+.+..+.   .-..-..++..++ 
T Consensus       190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k  269 (494)
T 1bpo_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (494)
T ss_dssp             CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred             ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence            43221113222222222211   122333332   3789999996542111122112221111   1234567788999 


Q ss_pred             CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       280 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      ...+..-+.-|.|.+||+.++.++..-+-...+|..-+-+....-++.....|.|.--.++.
T Consensus       270 ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            88888889999999999999999988777667776655554444444444555544444443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.76  E-value=0.016  Score=50.50  Aligned_cols=217  Identities=11%  Similarity=0.096  Sum_probs=110.0

Q ss_pred             ccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccC----CCEEEEEcCCCccee--eeccccCCeeEEEEccC
Q 012996           61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSED  133 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~  133 (451)
                      ..+.+||..+........ +..........-++.+++.|+.+    ..+.+||..+.+-..  .+.........+.+  +
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~  101 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--E  101 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--T
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--C
Confidence            678899988776543321 11111111122357777887755    568899987764322  22211112222222  5


Q ss_pred             CcEEEEeeCC------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC---------C
Q 012996          134 GSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---------D  198 (451)
Q Consensus       134 ~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~---------d  198 (451)
                      +++++.|+.+      ..+.+||..+.         ....+..+...... .+++ ..++  .+++.|+.         -
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTE---------SWHTKPSMLTQRCS-HGMV-EANG--LIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTT---------EEEEECCCSSCCBS-CEEE-EETT--EEEEECCEESCTTTCEEC
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCC---------ceEeCCCCcCCcce-eEEE-EECC--EEEEECCCCCCCCccccc
Confidence            7777787765      45888888552         11111111111111 1112 2244  56666653         3


Q ss_pred             CcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996          199 RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
                      ..+.+||+.+.+-...-.  .+..-.+++.. ++++++.|+.+     ..+.+||+.+..       +..+..+......
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~  240 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKGVT  240 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCBSC
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCccc
Confidence            458899998775332222  11111222222 56677776654     368889987753       2333222222222


Q ss_pred             eeEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996          272 VTCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (451)
Q Consensus       272 v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  301 (451)
                      ..++.+ .+.+++.|+.+     ..+.+||+.+.+
T Consensus       241 ~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          241 VKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             eeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            222222 36777777754     458888887753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.72  E-value=0.018  Score=51.27  Aligned_cols=237  Identities=12%  Similarity=0.031  Sum_probs=122.0

Q ss_pred             CCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcce---eee----ccccCCeeEEEEccC---CcEEEEe-eC------
Q 012996           81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLL---KKW----HAHYRAVTCLVFSED---GSFLISG-SE------  142 (451)
Q Consensus        81 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~s~-~~------  142 (451)
                      .....|+|.|+|+ ++++ ...|.|++++. .+...   ..+    .........|+|+|+   +..|+.+ +.      
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4568999999999 6655 56789999984 33321   111    122345689999995   4444433 22      


Q ss_pred             -CCcEEEeeCcchhhhhhhhcccccceeccc-----CCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEE
Q 012996          143 -DGCVRIWSLLTVFEECESQRASHLYLHSFT-----GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKV  203 (451)
Q Consensus       143 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~i  203 (451)
                       ...|..|++........   .....+..+.     .|.  ...++|.+++  .+.++.+.             .|.|.-
T Consensus        96 ~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~--~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~r  168 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHF--GGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVR  168 (353)
T ss_dssp             EEEEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCC--CCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred             ceeEEEEEEECCCCCCCC---ceEEEEEECCCCCCCccc--CccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEE
Confidence             22465565532100000   0011111111     232  3568999987  55555432             246777


Q ss_pred             EEcCCCc------------eeeeee-cccceeEEEECCCCCEEEEEeCC--CcEEEEEccCCCCC---------------
Q 012996          204 WSLLKGR------------LLRNIV-FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPS---------------  253 (451)
Q Consensus       204 wd~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~---------------  253 (451)
                      ++....-            ....+. .......++|+|....|+++...  +.=.+.-+..+..-               
T Consensus       169 i~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~  248 (353)
T 2g8s_A          169 LTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK  248 (353)
T ss_dssp             EETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred             ECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence            7764320            111222 22357789999944444444322  11122211111100               


Q ss_pred             -------CCCCCceeeeeeccCCcceeEEEEec--------CCEEEEEcCCCcEEEEeCCCCceEEEe---ecCCCCeeE
Q 012996          254 -------TSSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRMF---RLAKGPVNN  315 (451)
Q Consensus       254 -------~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~  315 (451)
                             .......++..+. +...+..+.|..        +.++++.-..+.|...++..++.+...   ......+..
T Consensus       249 ~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~  327 (353)
T 2g8s_A          249 IPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRD  327 (353)
T ss_dssp             CTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEE
T ss_pred             cCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeE
Confidence                   0000011222222 234567788863        556776667788888887766544332   122357899


Q ss_pred             EEEEecCceeee
Q 012996          316 ILVVRRPLYLNL  327 (451)
Q Consensus       316 l~~s~~~~~l~~  327 (451)
                      +++.|||.++++
T Consensus       328 v~~~pdG~lyv~  339 (353)
T 2g8s_A          328 VRTGPDGYLYVL  339 (353)
T ss_dssp             EEECTTSCEEEE
T ss_pred             EEECCCCcEEEE
Confidence            999999986664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.69  E-value=0.024  Score=50.16  Aligned_cols=226  Identities=13%  Similarity=0.094  Sum_probs=126.7

Q ss_pred             CCeeEEEECCCCcEEEEec------------cCCCEEEEEcCCC--cce-eeecc-----ccCCeeEEEEcc--CCc-EE
Q 012996           81 EPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASG--RLL-KKWHA-----HYRAVTCLVFSE--DGS-FL  137 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l  137 (451)
                      .....+...|+|..+++++            .+|.|.++|..+.  +.. ..+.+     ..-....+.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            3566777888876655542            6899999998743  211 11222     234667788766  343 34


Q ss_pred             EEe-eC--CCcEEEeeCcchhhhhhhhcccccceecccCC-cCceeEEEEeecCCeeEEEEee-----------------
Q 012996          138 ISG-SE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSAS-----------------  196 (451)
Q Consensus       138 ~s~-~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~-----------------  196 (451)
                      +.+ ..  +.+|.+|++....       .....+..+.+. -...+++.+.+++  .+.++..                 
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~-------~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~  200 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEE-------KSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGL  200 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTT-------TEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCeEEEEEEECCC-------CEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccC
Confidence            443 22  4678888874311       112233333332 2457889999887  6666643                 


Q ss_pred             CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996          197 EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (451)
Q Consensus       197 ~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  275 (451)
                      ..|.|..+|.  ++.......-...+.++|+|+++.|+++. ..+.|+.|++.....      ......+ ......-.+
T Consensus       201 ~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~------l~~~~~~-~~~g~PDGi  271 (355)
T 3sre_A          201 AWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT------LTPLRVL-SFDTLVDNI  271 (355)
T ss_dssp             CCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC------EEEEEEE-ECSSEEEEE
T ss_pred             CccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc------EecCEEE-eCCCCCceE
Confidence            1245555654  33222222335678899999999888775 567899999874211      0111222 224566778


Q ss_pred             EEec--CCEEEEEcCC-CcEEEEeCC--CCceEEEeec---CCCCeeEEEEEecCcee
Q 012996          276 AYST--GDLLISGSED-GMVRVWDPI--THNIVRMFRL---AKGPVNNILVVRRPLYL  325 (451)
Q Consensus       276 ~~~~--~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~~---~~~~v~~l~~s~~~~~l  325 (451)
                      ++.+  |++.+++..+ +.|..|+..  .+..+..++.   -...+..+ |..||+.|
T Consensus       272 ~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l  328 (355)
T 3sre_A          272 SVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTVL  328 (355)
T ss_dssp             EECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSSC
T ss_pred             EEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCEE
Confidence            8876  5555555444 345555654  2455555542   22344444 55577655

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.67  E-value=0.026  Score=50.25  Aligned_cols=239  Identities=13%  Similarity=0.044  Sum_probs=123.8

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeec---cccCCeeEEEEccC---CcEEEEeeC----C----Cc
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH---AHYRAVTCLVFSED---GSFLISGSE----D----GC  145 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~----d----g~  145 (451)
                      .....|+|.|+|+++++ ..+|.|++++ .+++ .+..+.   ........|+++|+   +..|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            46789999999986665 5569999997 4554 222111   12356789999997   444444332    2    56


Q ss_pred             EEEeeCcchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEEEEcCCCce
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGRL  211 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~  211 (451)
                      |..|+........   ......+..+. ........++|.+++  .++++.+.             .|.|.-++.. ++.
T Consensus       107 v~r~~~~~~~~~~---~~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~  180 (354)
T 3a9g_A          107 VIRGRLDGSTFKL---KEVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRP  180 (354)
T ss_dssp             EEEEEECSSSCCE---EEEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCC
T ss_pred             EEEEEECCCCcCc---CccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCC
Confidence            7777664310000   00001111111 111123578898887  55555432             2456666553 221


Q ss_pred             --------eeeee-cccceeEEEECC-CCCEEEEEeCCC---cEEEEEccCCCC-CCC-------CCC-ceeeeeeccCC
Q 012996          212 --------LRNIV-FPSVIDAIALDP-AEHVFYAGSRDG---SIYIAALNAESP-STS-------SYG-MHIIGSLSDHS  269 (451)
Q Consensus       212 --------~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~-~~~-------~~~-~~~~~~~~~~~  269 (451)
                              ...+. .......++|+| ++.++++-...+   .|.+..  .+.. -..       ... ..++..+....
T Consensus       181 p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~  258 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSET  258 (354)
T ss_dssp             CTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred             CCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence                    11111 123456899999 555444433222   233332  1110 000       000 01222231123


Q ss_pred             cceeEEEEe-------c-CCEEEEEcCCCcEEEEeCCCC-ceE--EEee-cCCCCeeEEEEEecCceeeecc
Q 012996          270 KAVTCLAYS-------T-GDLLISGSEDGMVRVWDPITH-NIV--RMFR-LAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       270 ~~v~~~~~~-------~-~~~l~s~~~dg~i~iwd~~~~-~~~--~~~~-~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      .....++|.       . +.++++.-..+.|...++... ...  ..+. .....+.++++.|||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            457778883       3 667777667778888888753 332  2222 2245789999999997666553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.62  E-value=0.028  Score=48.87  Aligned_cols=225  Identities=9%  Similarity=0.061  Sum_probs=113.3

Q ss_pred             EEEeecCCC--CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC---CccEEEEECCCCceeeee
Q 012996            3 LLIASSSVA--DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         3 ~~l~s~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~g~i~vw~~~~~~~~~~~   77 (451)
                      .+++.|+ .  ...+.+||..+++-.. +.....+.....+    ...++..++.||.+   -..+.+||..+.......
T Consensus        13 ~l~~~GG-~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~----~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~   86 (306)
T 3ii7_A           13 YRIALFG-GSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAAC----VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL   86 (306)
T ss_dssp             EEEEEEC-CSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEE----EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeC-CCCCceEEEecCCCCCEec-CCCCCcccceeEE----EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence            4555665 3  4678999988776432 2211111111111    22355666666532   157888998877654332


Q ss_pred             c-CCCCeeEEEECCCCcEEEEeccC------CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeC------
Q 012996           78 L-PAEPIKPIAANSHGTYIAGGGQS------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE------  142 (451)
Q Consensus        78 ~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~------  142 (451)
                      . +.......+..-++.+++.|+.+      ..+.+||..+.+-..  .+......-..+.  -++++++.|+.      
T Consensus        87 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           87 GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTT
T ss_pred             CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCc
Confidence            2 11111111112267777887765      458999987764322  2221111112222  25677777764      


Q ss_pred             ---CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCceeee
Q 012996          143 ---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRN  214 (451)
Q Consensus       143 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~  214 (451)
                         -..+.+||+.+.         ....+..+...... .+++. .++  .+++.|+.+     ..+.+||+.+.+-...
T Consensus       165 ~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          165 GRVLNSCEVYDPATE---------TWTELCPMIEARKN-HGLVF-VKD--KIFAVGGQNGLGGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             CEECCCEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred             ccccceEEEeCCCCC---------eEEECCCccchhhc-ceEEE-ECC--EEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence               234788888652         12222111111111 11222 244  677776653     3588999887653322


Q ss_pred             --eeccc-ceeEEEECCCCCEEEEEeCC-----CcEEEEEccCC
Q 012996          215 --IVFPS-VIDAIALDPAEHVFYAGSRD-----GSIYIAALNAE  250 (451)
Q Consensus       215 --~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  250 (451)
                        +..+. ...++.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus       232 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          232 SPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence              11111 1222333  66777777754     46788888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.59  E-value=0.013  Score=51.22  Aligned_cols=218  Identities=11%  Similarity=0.100  Sum_probs=104.9

Q ss_pred             CCcEEEEeccC----CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeC----C-----CcEEEeeCcchh
Q 012996           91 HGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE----D-----GCVRIWSLLTVF  155 (451)
Q Consensus        91 ~~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~----d-----g~i~vwd~~~~~  155 (451)
                      ++.+++.|+.+    ..+.+||..+.+-..  .+......- +++. .++.+++.|+.    +     ..+.+||+.+. 
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~-  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT-
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC-
Confidence            45666666632    358888887664322  121111111 2222 25677777775    2     35788887552 


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCceeeeee--cccceeEEEECC
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDP  228 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~  228 (451)
                              ....+..+....... +++. .++  .+++.|+.+     ..+.+||+.+.+-...-.  .+..-.+++.. 
T Consensus       101 --------~W~~~~~~p~~r~~~-~~~~-~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  167 (308)
T 1zgk_A          101 --------QWSPCAPMSVPRNRI-GVGV-IDG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-  167 (308)
T ss_dssp             --------EEEECCCCSSCCBTC-EEEE-ETT--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred             --------eEeECCCCCcCcccc-EEEE-ECC--EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-
Confidence                    111111111111111 1122 244  666666643     358889988765433222  11111122222 


Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCC
Q 012996          229 AEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPI  298 (451)
Q Consensus       229 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~  298 (451)
                      ++.+++.|+.+     ..+.+||+.+..       +..+..+......-. ++...+.+++.|+.+     ..+.+||+.
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeCCCCCCccccce-EEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence            56677777654     458888887653       222222221111222 222236677777664     458999988


Q ss_pred             CCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996          299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      +.+-...-..........+..-+++.++.|+.++
T Consensus       240 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  273 (308)
T 1zgk_A          240 TETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG  273 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             CCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence            7643322111111111122233677778887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.58  E-value=0.015  Score=50.83  Aligned_cols=216  Identities=11%  Similarity=0.114  Sum_probs=107.2

Q ss_pred             ccEEEEECCCCceeeeec-CCCCe-eEEEECCCCcEEEEecc----C-----CCEEEEEcCCCccee--eeccccCCeeE
Q 012996           61 GSILYWSWSKPQVEVKSL-PAEPI-KPIAANSHGTYIAGGGQ----S-----GDIYMWEVASGRLLK--KWHAHYRAVTC  127 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~  127 (451)
                      ..+.+||..+........ +.... .+++ .-++.+++.|+.    +     ..+.+||..+.+-..  .+.........
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            578899988766543321 11111 1222 225777777775    2     468899987764222  22211122222


Q ss_pred             EEEccCCcEEEEeeCC-----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC----
Q 012996          128 LVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED----  198 (451)
Q Consensus       128 ~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d----  198 (451)
                      +.+  ++++++.|+.+     ..+.+||+.+.         ....+..+......- +++. .++  .+++.|+.+    
T Consensus       118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~~-~~~~-~~~--~iyv~GG~~~~~~  182 (308)
T 1zgk_A          118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERD---------EWHLVAPMLTRRIGV-GVAV-LNR--LLYAVGGFDGTNR  182 (308)
T ss_dssp             EEE--TTEEEEECCEETTEECCCEEEEETTTT---------EEEECCCCSSCCBSC-EEEE-ETT--EEEEECCBCSSCB
T ss_pred             EEE--CCEEEEEcCCCCCcccccEEEECCCCC---------eEeECCCCCccccce-EEEE-ECC--EEEEEeCCCCCCc
Confidence            222  57777777654     35778887542         111111111111111 1222 244  677777654    


Q ss_pred             -CcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996          199 -RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (451)
Q Consensus       199 -~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
                       ..+.+||+.+.+-...-.  .+..-.+++.. ++.+++.|+.+     ..+.+||+.+..       +..+..+.....
T Consensus       183 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~  254 (308)
T 1zgk_A          183 LNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-------WTFVAPMKHRRS  254 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEECCCCSSCCB
T ss_pred             CceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-------EEECCCCCCCcc
Confidence             458899988765332211  11111222222 66777777654     468899987753       222222221111


Q ss_pred             ceeEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996          271 AVTCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (451)
Q Consensus       271 ~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  301 (451)
                      .. +++...+.+++.|+.+     ..+.+||+.+.+
T Consensus       255 ~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          255 AL-GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SC-EEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ce-EEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            11 2222236677777654     346777776653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.56  E-value=0.0027  Score=56.72  Aligned_cols=152  Identities=12%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             eccCcccCCCCCCccEEEEECCCCc-eeeeecC----CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc--------
Q 012996           48 ASSQLREQPSASSGSILYWSWSKPQ-VEVKSLP----AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--------  114 (451)
Q Consensus        48 ~~~~~l~~~~~d~g~i~vw~~~~~~-~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------  114 (451)
                      .+|..++++-.  +.||.-++.... .......    -..|..+..+|+|++||..+. ..|.|-.+..+..        
T Consensus        30 ~n~t~i~~a~~--n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFIQD--NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEEET--TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEEEC--CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            34555544443  678877876332 2222222    236889999999999999765 4788988863321        


Q ss_pred             ----eeeecc------ccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996          115 ----LKKWHA------HYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (451)
Q Consensus       115 ----~~~~~~------~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (451)
                          .+.+.-      ...+|..+.|+|   .+..|++-..|+.|++||+........ ..........+......|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence                112221      246799999999   457899999999999999976322111 111111111223344678899


Q ss_pred             EEeecCCeeEEEE--eeCCCcEEEEE
Q 012996          182 VIGYGGVSATIVS--ASEDRTCKVWS  205 (451)
Q Consensus       182 ~~~~~~~~~~l~s--~~~d~~i~iwd  205 (451)
                      +|..++  -.|+.  .+.+|.|+-.-
T Consensus       186 ~Fg~~~--lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          186 EFSKDG--LTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EECTTS--SCEEEEECTTSCEEEEES
T ss_pred             EEcCCC--cEEEEEecCCCCCEEEEC
Confidence            998876  44444  44778776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.55  E-value=0.016  Score=50.83  Aligned_cols=223  Identities=12%  Similarity=0.058  Sum_probs=110.0

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC-----C-C----ccEEEEECCC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA-----S-S----GSILYWSWSK   70 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~-----d-~----g~i~vw~~~~   70 (451)
                      |.+++.|+   ..+.+||..+++-..  .....+ +..-.++   ...++..++.||.     . .    ..+.+||..+
T Consensus         5 ~~l~~~GG---~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~---~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~   76 (315)
T 4asc_A            5 DLIFMISE---EGAVAYDPAANECYC--ASLSSQVPKNHVSL---VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD   76 (315)
T ss_dssp             EEEEEEET---TEEEEEETTTTEEEE--EECCCCSCSSEEEE---ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred             eEEEEEcC---CceEEECCCCCeEec--CCCCCCCCccceEE---EEECCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence            45666666   469999998887543  111111 1222222   2345666666662     1 0    2377888877


Q ss_pred             Cceeeeec-CCC--CeeEEEECCCCcEEEEeccC--------CCEEEEEcCCCcce--eeeccccCCeeEEEEccCCcEE
Q 012996           71 PQVEVKSL-PAE--PIKPIAANSHGTYIAGGGQS--------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        71 ~~~~~~~~-~~~--~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      ........ +..  ....+.+  ++.+++.|+.+        ..+.+||..+.+-.  ..+......-..+.  .+++.+
T Consensus        77 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy  152 (315)
T 4asc_A           77 SEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVY  152 (315)
T ss_dssp             TEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred             CeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEE
Confidence            66432211 111  1112222  56777777742        45899998776422  22221111112222  356777


Q ss_pred             EEeeC-C-----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEc
Q 012996          138 ISGSE-D-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSL  206 (451)
Q Consensus       138 ~s~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~  206 (451)
                      +.|+. +     ..+.+||+.+.         ....+......... .+++ ..++  .+++.|+.++     .+.+||+
T Consensus       153 v~GG~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~~~~~yd~  219 (315)
T 4asc_A          153 VIGGKGSDRKCLNKMCVYDPKKF---------EWKELAPMQTARSL-FGAT-VHDG--RIIVAAGVTDTGLTSSAEVYSI  219 (315)
T ss_dssp             EECCBCTTSCBCCCEEEEETTTT---------EEEECCCCSSCCBS-CEEE-EETT--EEEEEEEECSSSEEEEEEEEET
T ss_pred             EEeCCCCCCcccceEEEEeCCCC---------eEEECCCCCCchhc-eEEE-EECC--EEEEEeccCCCCccceEEEEEC
Confidence            77776 2     35888888652         11111111111111 1122 2244  6777777654     5888998


Q ss_pred             CCCceeeeee--cccceeEEEECCCCCEEEEEeCCC--------------cEEEEEccCC
Q 012996          207 LKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG--------------SIYIAALNAE  250 (451)
Q Consensus       207 ~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~  250 (451)
                      .+.+-...-.  .+..-.+++.. ++.+++.|+.++              .+.+||+.+.
T Consensus       220 ~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          220 TDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             CCCeEEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            8764333222  11111222222 556777776532              3667777664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0046  Score=54.25  Aligned_cols=115  Identities=11%  Similarity=0.150  Sum_probs=71.1

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEec-ceEeeccCcccCC-CCCCccEEEEECCCCceeeeec-
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG-QRFLASSQLREQP-SASSGSILYWSWSKPQVEVKSL-   78 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~-~~d~g~i~vw~~~~~~~~~~~~-   78 (451)
                      +.+++.++ .||.|.-.|..+|+...+++..  ....+.... .....++..++.. ..| |.|..++..++....... 
T Consensus        10 ~~~V~v~t-~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-G~l~a~~~~~G~~~~~~~~   85 (339)
T 2be1_A           10 SDILIAAD-VEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-GNIYYFNAHQGLQKLPLSI   85 (339)
T ss_dssp             EEEEEEEE-TTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-TEEEEEETTTEEEEEEEEH
T ss_pred             CCEEEEEe-CCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-CEEEEEECCCCcEEeeecc
Confidence            35778888 8999999999999999988654  101111111 0010122333333 345 999999988775443322 


Q ss_pred             ----CCCCeeE---EEE-----CCCCcEEEEeccCCCEEEEEcCCCcceeeecc
Q 012996           79 ----PAEPIKP---IAA-----NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA  120 (451)
Q Consensus        79 ----~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  120 (451)
                          ...++..   ...     +..+..+++|+.+|.+.-.|+.+|+.+..+..
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence                1122221   000     01456788999999999999999999988853

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.51  E-value=0.0066  Score=62.62  Aligned_cols=190  Identities=11%  Similarity=0.117  Sum_probs=118.2

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-Ccceeeeccc---
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH---  121 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~---  121 (451)
                      .+|..+.+|.-..  .++.|+|+++..........++|..=.|-.+.. |+..+. ..|+.|++.. ..+...+..|   
T Consensus        73 MnP~~~iiALrag--~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVTD-NAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEecC--CeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEEEcC-CeEEEeccCCCCccHHHHhcchhc
Confidence            6677777776653  799999998777655555567888888865444 433333 4799999964 3445555544   


Q ss_pred             -cCCeeEEEEccCCcEEEEee-------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe-eEE
Q 012996          122 -YRAVTCLVFSEDGSFLISGS-------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATI  192 (451)
Q Consensus       122 -~~~v~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l  192 (451)
                       ...|..-..+++.++++..|       -.|.+.+|.++..            ..+.+.||.+.-..+........ ..+
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------------~sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------------VSQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------------cchhhhHhHhhhheeccCCCCCCceEE
Confidence             35666777788888877433       3578899988542            23334555544433333211111 222


Q ss_pred             EEeeC---CCcEEEEEcCCC---ceee-----eeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          193 VSASE---DRTCKVWSLLKG---RLLR-----NIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       193 ~s~~~---d~~i~iwd~~~~---~~~~-----~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      +.+..   .+.++|.++...   ....     .+..     ..-..++..++....++.-+.-|.|++||+.++.
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence            22211   368888888543   1111     0111     2234577888888899999999999999999975

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.51  E-value=0.014  Score=52.23  Aligned_cols=236  Identities=13%  Similarity=0.067  Sum_probs=112.9

Q ss_pred             ccCcccCCCCCCccEEEEECCC--Cceeeeec-C-CCCe-eEEEECCCCcEEEEecc-C---------CCEEEEEcCCCc
Q 012996           49 SSQLREQPSASSGSILYWSWSK--PQVEVKSL-P-AEPI-KPIAANSHGTYIAGGGQ-S---------GDIYMWEVASGR  113 (451)
Q Consensus        49 ~~~~l~~~~~d~g~i~vw~~~~--~~~~~~~~-~-~~~v-~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~~  113 (451)
                      ++...+.||.+...+.+||...  ........ + .... .+++. -++.+++.|+. +         ..+.+||+.+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            5667777776657899999874  33222211 1 1111 12222 25777777776 2         468999987764


Q ss_pred             cee--eec-cccCCeeEEEEccCCcEEEEeeCC---------------------------------------CcEEEeeC
Q 012996          114 LLK--KWH-AHYRAVTCLVFSEDGSFLISGSED---------------------------------------GCVRIWSL  151 (451)
Q Consensus       114 ~~~--~~~-~~~~~v~~~~~~~~~~~l~s~~~d---------------------------------------g~i~vwd~  151 (451)
                      -..  .+. .......++.  .++++++.|+.+                                       ..+.+||+
T Consensus        98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            222  222 1111112222  467777888764                                       46888887


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC------CCcEEEEEc--CCCceee--eeecccc-
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSL--LKGRLLR--NIVFPSV-  220 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~------d~~i~iwd~--~~~~~~~--~~~~~~~-  220 (451)
                      .+         .....+..+......-.+++. .++  .+++.|+.      ...+.+||+  .+.+-..  .+..+.. 
T Consensus       176 ~~---------~~W~~~~~~p~~~~~~~~~~~-~~~--~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~  243 (357)
T 2uvk_A          176 ST---------QQWSYAGESPWYGTAGAAVVN-KGD--KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV  243 (357)
T ss_dssp             TT---------TEEEEEEECSSCCCBSCEEEE-ETT--EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC
T ss_pred             CC---------CcEEECCCCCCCCcccccEEE-ECC--EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc
Confidence            55         222222222111111012222 233  56666653      345777876  4433222  1111111 


Q ss_pred             eeEEEECCCCCEEEEEeCC----------------------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996          221 IDAIALDPAEHVFYAGSRD----------------------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                      ....+...++.+++.|+.+                      ..+.+||+.+..       +..+..+......-.++. .
T Consensus       244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~-~  315 (357)
T 2uvk_A          244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-------WDKSGELSQGRAYGVSLP-W  315 (357)
T ss_dssp             BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----------CEEEEECSSCCBSSEEEE-E
T ss_pred             ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-------eeeCCCCCCCcccceeEE-e
Confidence            1111222356677777632                      257788887653       344443333222222222 2


Q ss_pred             cCCEEEEEcCCC------cEEEEeCCCCceEEEee
Q 012996          279 TGDLLISGSEDG------MVRVWDPITHNIVRMFR  307 (451)
Q Consensus       279 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~  307 (451)
                      .+.+++.|+.++      .|.++++++++.+....
T Consensus       316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            377778887543      35666888777665543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.45  E-value=0.0093  Score=53.35  Aligned_cols=135  Identities=10%  Similarity=0.142  Sum_probs=86.7

Q ss_pred             CCcEEEEEcCCCceeeeeecc----c-ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC----CCceeeeeecc-
Q 012996          198 DRTCKVWSLLKGRLLRNIVFP----S-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGMHIIGSLSD-  267 (451)
Q Consensus       198 d~~i~iwd~~~~~~~~~~~~~----~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~-  267 (451)
                      ++.||.-++......+.+..+    . .+..+..+|+|++|+..+ +..|.+..+..+......    ...+ ...+.- 
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc-eeEEEcC
Confidence            477888888755555555543    2 678899999999999886 457889888843221111    0011 111111 


Q ss_pred             -----CCcceeEEEEec----CCEEEEEcCCCcEEEEeCCCC--ceEEEee---------cCCCCeeEEEEEecCceeee
Q 012996          268 -----HSKAVTCLAYST----GDLLISGSEDGMVRVWDPITH--NIVRMFR---------LAKGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       268 -----~~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~~l~~s~~~~~l~~  327 (451)
                           ...+|..+.|+|    +..|++-..|+.|++||+...  ++. .++         .....|.+++|.+++-.|..
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                 357899999999    568999999999999999752  222 222         12246778888886655544


Q ss_pred             --ccCCCCcc
Q 012996          328 --GSFSNPHT  335 (451)
Q Consensus       328 --~s~d~~i~  335 (451)
                        .+..|-|+
T Consensus       197 l~~t~~GDIY  206 (452)
T 3pbp_A          197 LNTTEGGDIF  206 (452)
T ss_dssp             EECTTSCEEE
T ss_pred             EecCCCCCEE
Confidence              33444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.44  E-value=0.043  Score=48.89  Aligned_cols=235  Identities=12%  Similarity=0.081  Sum_probs=114.5

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eee-----cCCCCeeEEEECCC---CcEEEEecc-C-----CC
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKS-----LPAEPIKPIAANSH---GTYIAGGGQ-S-----GD  103 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~-----~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~  103 (451)
                      -..++  |.|+|+++++ ... |.|.+++ . +... ...     ........|+|+|+   +..|.++.. .     +.
T Consensus        33 P~~ia--~~pdG~l~V~-e~~-g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           33 PWALA--FLPDGGMLIA-ERP-GRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             EEEEE--ECTTSCEEEE-ETT-TEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             ceEEE--EcCCCeEEEE-eCC-CeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            44556  9999985554 444 8999998 3 3322 111     12457899999998   444444332 2     56


Q ss_pred             EEEEEcCCCc-----ce-eeec---cccCCeeEEEEccCCcEEEEeeCC-------------CcEEEeeCcchhhhhhhh
Q 012996          104 IYMWEVASGR-----LL-KKWH---AHYRAVTCLVFSEDGSFLISGSED-------------GCVRIWSLLTVFEECESQ  161 (451)
Q Consensus       104 i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~  161 (451)
                      |..|+...+.     .+ ..+.   ........++|.|||.+.++.+..             |.|.-++...........
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888876432     11 1132   111234689999999876665432             455555543200000000


Q ss_pred             ---cccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcE------EEEEcCCCc------------------eee
Q 012996          162 ---RASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTC------KVWSLLKGR------------------LLR  213 (451)
Q Consensus       162 ---~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i------~iwd~~~~~------------------~~~  213 (451)
                         ......+. ..++ .....++|++ .+  .++++-.....+      .+.-+..+.                  +..
T Consensus       187 ~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g--~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          187 LGRRGARPEVY-SLGH-RNPQGLAWHPKTG--ELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             TTCTTSCTTEE-EECC-SEECCCEECTTTC--CEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             cCCCCCCccEE-EEcC-CCcccEEEECCCC--CEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence               00000011 1122 2346678887 44  444443322221      122222222                  111


Q ss_pred             eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996          214 NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      .+........++| .++..+++....+.|...++........   ......+......+..+++.| |.++++..
T Consensus       263 ~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~---~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          263 FWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR---VLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE---EEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee---ecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            2222234556777 4666666666667788887765421000   000111112235788899988 76665543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.42  E-value=0.052  Score=47.41  Aligned_cols=217  Identities=8%  Similarity=0.024  Sum_probs=107.4

Q ss_pred             ccEEEEECCCCceeeeecC--CCCeeEEEECCCCcEEEEecc----C-------CCEEEEEcCCCccee--eeccccCCe
Q 012996           61 GSILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQ----S-------GDIYMWEVASGRLLK--KWHAHYRAV  125 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~--~~~~~~~~v  125 (451)
                      ..+..||..+.+......+  ...........++.+++.|+.    +       ..+.+||..+.+-..  .+.......
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            4688899888775433221  123333334457777777773    1       127788887664321  121111111


Q ss_pred             eEEEEccCCcEEEEeeCC--------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996          126 TCLVFSEDGSFLISGSED--------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE  197 (451)
Q Consensus       126 ~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~  197 (451)
                      ..+.+  ++..++.|+.+        ..+.+||+.+.         ....+..+...... .+++ ..++  .+++.|+.
T Consensus        93 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~  157 (315)
T 4asc_A           93 GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSF---------KWGESDPLPYVVYG-HTVL-SHMD--LVYVIGGK  157 (315)
T ss_dssp             EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTT---------EEEECCCCSSCCBS-CEEE-EETT--EEEEECCB
T ss_pred             eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCC---------cEeECCCCCCcccc-eeEE-EECC--EEEEEeCC
Confidence            12222  56777777742        35888888552         11111111111111 1122 2344  67777765


Q ss_pred             -C-----CcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeee
Q 012996          198 -D-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       198 -d-----~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                       +     ..+.+||+.+.+-...-.  .+..-.+++. -++++++.|+.++     .+.+||+.+..       +..+..
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~  229 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK-------WAPFEA  229 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE-------EEEECC
T ss_pred             CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe-------EEECCC
Confidence             2     468999988765332222  1111122222 2667777777654     57888887653       233322


Q ss_pred             eccCCcceeEEEEecCCEEEEEcCCC--------------cEEEEeCCCCc
Q 012996          265 LSDHSKAVTCLAYSTGDLLISGSEDG--------------MVRVWDPITHN  301 (451)
Q Consensus       265 ~~~~~~~v~~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~  301 (451)
                      +........ ++...+.+++.|+.++              .+.+||+.+.+
T Consensus       230 ~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          230 FPQERSSLS-LVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             CSSCCBSCE-EEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCCccccee-EEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            222112222 2222366777776532              36677876654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.39  E-value=0.062  Score=47.35  Aligned_cols=245  Identities=11%  Similarity=0.013  Sum_probs=129.7

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc--eeee----ccccCCeeEEEEccC----CcEEEEe--eCCCcEE
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKW----HAHYRAVTCLVFSED----GSFLISG--SEDGCVR  147 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~----~~~l~s~--~~dg~i~  147 (451)
                      -.....|+|.|+|+++++--..|.|++++..++..  +..+    .........|+++|+    +.+.++-  ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            45678999999999887755589999998655543  2111    223456789999995    4333332  2345566


Q ss_pred             EeeCcchhhhhhhhcccccceecc---cCCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEEEEcCCCce
Q 012996          148 IWSLLTVFEECESQRASHLYLHSF---TGHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGRL  211 (451)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~  211 (451)
                      -|.+................+..+   ..|  .-..|+|.+++  .+.++.+.             .|.|.-.+... +.
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~i  185 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDK--MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EP  185 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTS--CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCC--CEEEEECCCCCCccccCCCCCCCEEEEEeCCC-Cc
Confidence            565533110000000011111111   223  34568899887  56666432             34555555432 21


Q ss_pred             --------eeeee-cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCC-CC--------CCCceeeeeeccCCcce
Q 012996          212 --------LRNIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPS-TS--------SYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       212 --------~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~--------~~~~~~~~~~~~~~~~v  272 (451)
                              ...+. .......++|+|++.++++-. .++.=.+.-+..+..- ..        .....++..+..+....
T Consensus       186 p~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap  265 (347)
T 3das_A          186 APGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP  265 (347)
T ss_dssp             CTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred             cCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence                    01111 123467899999876655532 2332222222222110 00        00012233333233466


Q ss_pred             eEEEEecCCEEEEEcCCCcEEEEeCCCCce----EEEeecCCCCeeEEEEEecCceeeecc
Q 012996          273 TCLAYSTGDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       273 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      ..|+|..+..++..-..+.|....+.....    ...+....+.+.+|+..|||.++++.+
T Consensus       266 ~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          266 SGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            788887776777666667777666654432    223334456899999999998766643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.32  E-value=0.024  Score=58.72  Aligned_cols=262  Identities=10%  Similarity=0.075  Sum_probs=142.6

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  140 (451)
                      ..|.|-|+.++....+..-  .--+.-.+|..+.+|.-. ...+.|+|+.+...+..+.- ..+|.--.|-.+. .|+-.
T Consensus        48 ~~vvIidl~~~~~~~rrpi--~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lV  122 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV  122 (1630)
T ss_pred             ceEEEEECCCCCCcccccc--cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEE
Confidence            5788888887665433221  122344678888887754 67899999998887777653 3466666776543 34444


Q ss_pred             eCCCcEEEeeCcchhhhhhhhcccccceecccCC----cCceeEEEEeecCCeeEEEEee-------CCCcEEEEEcCCC
Q 012996          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG  209 (451)
Q Consensus       141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~  209 (451)
                      +. ..|.-|++..          ...+...+..|    ...|..-..+++.  ++++..+       -.|.+.+|....+
T Consensus       123 T~-~aVyHW~~~~----------~s~P~k~fdR~~~L~~~QIinY~~d~~~--kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          123 TD-NAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             cC-CeEEEeccCC----------CCccHHHHhcchhcccCeeEEeeeCCCC--CeEEEEeeccCCCcccceeeeeecccc
Confidence            33 4799999953          12233333333    3445555555555  6666433       3478888987654


Q ss_pred             ceeeeeecccceeEEEEC--CC-CCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEec-
Q 012996          210 RLLRNIVFPSVIDAIALD--PA-EHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST-  279 (451)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-  279 (451)
                      .....-.|-.....+...  +. ...++.+.   ..+.+++.++.........+..+.+..+.   .-..-..++..++ 
T Consensus       190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k  269 (1630)
T 1xi4_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (1630)
T ss_pred             cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence            321111121111111111  11 11222221   13689999986541111111111111111   1233456788888 


Q ss_pred             CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       280 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ...+..-+.-|.|.+||+.++.++..-+-...+|...+-+....-++.....|.|.--.+.
T Consensus       270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence            7788888999999999999999887655545555544444332223333344443333333

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.24  E-value=0.041  Score=48.20  Aligned_cols=225  Identities=8%  Similarity=0.078  Sum_probs=106.6

Q ss_pred             eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC---Cc-------cEEEEECCCC
Q 012996            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SG-------SILYWSWSKP   71 (451)
Q Consensus         2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~g-------~i~vw~~~~~   71 (451)
                      |.+++.|+ .  .+.+||..+.+-.. .......+..-.++   ...++..++.||..   ++       .+.+||..+.
T Consensus        16 ~~i~~~GG-~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~---~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   88 (318)
T 2woz_A           16 DLILLVND-T--AAVAYDPMENECYL-TALAEQIPRNHSSI---VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS   88 (318)
T ss_dssp             EEEEEECS-S--EEEEEETTTTEEEE-EEECTTSCSSEEEE---ECSSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred             chhhhccc-c--ceEEECCCCCceec-ccCCccCCccceEE---EEECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence            34556666 3  48999998887544 22111112222222   23456666666621   01       2777887776


Q ss_pred             ceeeeec-CC-CCeeEEEECCCCcEEEEeccC-------CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEe
Q 012996           72 QVEVKSL-PA-EPIKPIAANSHGTYIAGGGQS-------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISG  140 (451)
Q Consensus        72 ~~~~~~~-~~-~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~  140 (451)
                      ....... +. ..-.+++. -++.+++.|+.+       ..+.+||..+.+-..  .+......-..+.  .++++++.|
T Consensus        89 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G  165 (318)
T 2woz_A           89 EWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLG  165 (318)
T ss_dssp             EEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEEC
T ss_pred             cEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEc
Confidence            6443221 11 11112222 256777777754       247888887654322  1211111111222  357777777


Q ss_pred             eCC------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCC
Q 012996          141 SED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKG  209 (451)
Q Consensus       141 ~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~  209 (451)
                      +.+      ..+.+||+.+.         ....+......... .+++. .++  .+++.|+.+     ..+.+||+.+.
T Consensus       166 G~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          166 GKTDDKKCTNRVFIYNPKKG---------DWKDLAPMKTPRSM-FGVAI-HKG--KIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             CEESSSCBCCCEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CCCCCCCccceEEEEcCCCC---------EEEECCCCCCCccc-ceEEE-ECC--EEEEEcCcCCCCccceEEEEECCCC
Confidence            642      35888888652         12222111111111 12222 243  677776643     35778998876


Q ss_pred             ceeeeeec--ccceeEEEECCCCCEEEEEeCC--------------CcEEEEEccCC
Q 012996          210 RLLRNIVF--PSVIDAIALDPAEHVFYAGSRD--------------GSIYIAALNAE  250 (451)
Q Consensus       210 ~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~  250 (451)
                      +-...-..  +..-.+++. -++.+++.|+.+              ..+.+||+.+.
T Consensus       233 ~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          233 KWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             CEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             eEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            53322211  111112222 245666666643              34666776654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.23  E-value=0.06  Score=47.62  Aligned_cols=196  Identities=13%  Similarity=0.060  Sum_probs=109.8

Q ss_pred             CeeEEEEccCCcEEEEe------------eCCCcEEEeeCcchhhhhhhhcccccceec----ccCCcCceeEEEEeec-
Q 012996          124 AVTCLVFSEDGSFLISG------------SEDGCVRIWSLLTVFEECESQRASHLYLHS----FTGHTLRITDIVIGYG-  186 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~-  186 (451)
                      ...++...|+|..++++            ..+|.|.++|+.+...       ....+..    +.........+.+..+ 
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-------~~~~l~~~g~~~~~~~f~PhGi~~~~d~  123 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-------AVSELEIIGNTLDISSFNPHGISTFIDD  123 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-------CEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-------ceEEEEccCCCCCcCceeeeeeEEEECC
Confidence            34566777776555444            2689999999863111       0011111    1123345667777663 


Q ss_pred             -CCeeEEEEeeC--CCcEEEEEcCCCc-e---eeeeec--ccceeEEEECCCCCEEEEEe-----------------CCC
Q 012996          187 -GVSATIVSASE--DRTCKVWSLLKGR-L---LRNIVF--PSVIDAIALDPAEHVFYAGS-----------------RDG  240 (451)
Q Consensus       187 -~~~~~l~s~~~--d~~i~iwd~~~~~-~---~~~~~~--~~~i~~~~~~~~~~~l~~~~-----------------~dg  240 (451)
                       +...++++-..  +.++.+|++.... .   +..+.+  -...+.+.+.++|.+.++..                 ..|
T Consensus       124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence             32234444333  4677887765432 2   222221  24578899999998776653                 124


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-cCCCcEEEEeCCC-Cce--EEEeecCCCCeeE
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPIT-HNI--VRMFRLAKGPVNN  315 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~  315 (451)
                      .|+.+|..  .          +..+...-...+.++|+| ++.|+.+ +..+.|..|++.. +..  .+.+. ..+..-.
T Consensus       204 ~vyr~d~~--~----------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDG  270 (355)
T 3sre_A          204 FVTYYSPN--D----------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDN  270 (355)
T ss_dssp             EEEEECTT--C----------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEE
T ss_pred             EEEEEECC--e----------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCce
Confidence            45555442  1          112222335678999999 7666655 4578899999863 332  22342 2456788


Q ss_pred             EEEEe-cCceeeeccCC-CCcccccc
Q 012996          316 ILVVR-RPLYLNLGSFS-NPHTSSRR  339 (451)
Q Consensus       316 l~~s~-~~~~l~~~s~d-~~i~iw~~  339 (451)
                      +++.+ +|++.+++..+ +.+..|+.
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             EEEeCCCCcEEEEecCCceEEEEECC
Confidence            99999 58877766544 34444443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.22  E-value=0.094  Score=45.82  Aligned_cols=216  Identities=9%  Similarity=0.114  Sum_probs=104.7

Q ss_pred             cEEEEECCCCceeeeecC--CCCeeEEEECCCCcEEEEecc----CC-------CEEEEEcCCCccee--eeccccCCee
Q 012996           62 SILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQ----SG-------DIYMWEVASGRLLK--KWHAHYRAVT  126 (451)
Q Consensus        62 ~i~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~--~~~~~~~~v~  126 (451)
                      .+..||..+.+.......  ...........++.+++.|+.    ++       .+.+||..+.+-..  .+........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            478899887775442211  122223334456777888773    12       17788877654322  2221111112


Q ss_pred             EEEEccCCcEEEEeeCC-------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--
Q 012996          127 CLVFSEDGSFLISGSED-------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--  197 (451)
Q Consensus       127 ~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~--  197 (451)
                      .+.+  ++..++.|+.+       ..+.+||+.+.         ....+..+...... .+++. .++  .+++.|+.  
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~  169 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA---------KWSEVKNLPIKVYG-HNVIS-HNG--MIYCLGGKTD  169 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT---------EEEEECCCSSCEES-CEEEE-ETT--EEEEECCEES
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC---------CEeECCCCCCcccc-cEEEE-ECC--EEEEEcCCCC
Confidence            2222  56777777754       24777787542         11111111111001 11222 344  66666654  


Q ss_pred             ----CCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          198 ----DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       198 ----d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                          -..+.+||+.+.+-...-.  .+..-.+++. -++.+++.|+.+     ..+.+||+.+..       +..+..+.
T Consensus       170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p  241 (318)
T 2woz_A          170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-------WEVMTEFP  241 (318)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-------EEECCCCS
T ss_pred             CCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-------EEECCCCC
Confidence                2358999998765333212  2211122222 256677777643     357788887653       23332222


Q ss_pred             cCCcceeEEEEecCCEEEEEcCC--------------CcEEEEeCCCCc
Q 012996          267 DHSKAVTCLAYSTGDLLISGSED--------------GMVRVWDPITHN  301 (451)
Q Consensus       267 ~~~~~v~~~~~~~~~~l~s~~~d--------------g~i~iwd~~~~~  301 (451)
                      ...... ++....+.+++.|+.+              ..+.+||+.+.+
T Consensus       242 ~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          242 QERSSI-SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             SCCBSC-EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             Ccccce-EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            221111 2222236677777654              347778877654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.21  E-value=0.21  Score=49.70  Aligned_cols=294  Identities=11%  Similarity=0.072  Sum_probs=151.2

Q ss_pred             CeEEEECccCceeeeee--cCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC------CCCeeE
Q 012996           14 GIGCWDLESGAEQLRYK--SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------AEPIKP   85 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~------~~~v~~   85 (451)
                      .|..+|..+++.. .+.  ...-+...|.++.  ...+|.+.+ +..  +.|..++..+.........      ...|.+
T Consensus       122 Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~--~d~~g~lWi-gt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  195 (758)
T 3ott_A          122 GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSII--RTKDNQIYV-GTY--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNS  195 (758)
T ss_dssp             EEEEEETTTCCEE-EECHHHHCCSCSCEEEEE--ECTTCCEEE-EET--TEEEEEETTTTEEEEECCCCCTTCSSCCEEE
T ss_pred             cceeEeCCCCeEE-EeccCCCCcCCCeEEEEE--EcCCCCEEE-EeC--CCHhhCccCCCceEEecCCCccccccceeEE
Confidence            5667776655432 221  0111234455554  444555544 333  3477788766654322211      224888


Q ss_pred             EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      +...+++..|..|+. +-+..+|..+++...........|.++...++|.+.+ |+.+ -+.+++..+..         .
T Consensus       196 i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~---------~  263 (758)
T 3ott_A          196 LLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTP---------L  263 (758)
T ss_dssp             EEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSC---------C
T ss_pred             EEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCc---------E
Confidence            888777765555554 4588889776643322111234588888877776544 4544 57788864311         0


Q ss_pred             cceec-----ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------cccceeEEEECCCCCE
Q 012996          166 LYLHS-----FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHV  232 (451)
Q Consensus       166 ~~~~~-----~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~  232 (451)
                      .....     ..-....|.++.....+   .|..|+..| +.++... . ....+.        ....|.++.-+.+|.+
T Consensus       264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g---~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l  337 (758)
T 3ott_A          264 QHIIHDSRNIQSLTNNIIWNIFADQEH---NIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFY  337 (758)
T ss_dssp             EEECCCTTCTTSCSCSCEEEEEECTTC---CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred             EEEEcCCCCcCcCCcCeEEEEEEcCCC---CEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence            00000     01123457777765554   455566666 5544332 1 111111        1245888888877765


Q ss_pred             EEEEeCCCcEEEEEccCCCCCCCCCCceeeee----eccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEee-
Q 012996          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR-  307 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  307 (451)
                      . +|+.+| +..++..+.....    ......    ..-....|.++.-.+...|..|+ ++-|..||..+++...-.. 
T Consensus       338 W-iGt~~G-l~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~  410 (758)
T 3ott_A          338 W-FGGANG-LIRFTDPAGERHD----AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIV  410 (758)
T ss_dssp             E-EEETTE-EEEESCTTSSCCC----CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEE
T ss_pred             E-EeeCCc-ceeecccccccce----eEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecC
Confidence            4 455555 5566554321000    000000    00112468888877733344455 4568899988765433211 


Q ss_pred             c-----CCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          308 L-----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       308 ~-----~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      .     ....|.++...++|.+ ..|+..+-+..++.
T Consensus       411 ~~~~~~~~~~v~~i~~d~~g~l-WigT~~~Gl~~~~~  446 (758)
T 3ott_A          411 DNTGTYNTNWTYYIFEDTAGQL-WISTCLGGIFVVDK  446 (758)
T ss_dssp             CCC--CBSSSEEEEEECTTSEE-EEEESSSCEEEEEH
T ss_pred             CCcCCCCCceEEEEEEcCCCCE-EEEECCCceEEEcc
Confidence            1     1235788887777754 44555555555553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.19  E-value=0.041  Score=49.08  Aligned_cols=126  Identities=7%  Similarity=0.046  Sum_probs=58.5

Q ss_pred             CcEEEEEcCCCceeeeeecc--cce-eEEEECCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996          199 RTCKVWSLLKGRLLRNIVFP--SVI-DAIALDPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
                      ..+.+||+.+.+-...-..+  ... .+++.. ++.+++.|+.      ...+..||++....     .+..+..+....
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-----~W~~~~~~~~~~  241 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-----KWNKLAPVSSPD  241 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-----EEEECCCSSTTT
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-----cEEecCCCCCCc
Confidence            47889998876543322222  111 233322 5566666653      34577787632211     122222221111


Q ss_pred             ccee-EEEEecCCEEEEEcCC----------------------CcEEEEeCCCCc--eEEEeecCCCCeeEEEEEecCce
Q 012996          270 KAVT-CLAYSTGDLLISGSED----------------------GMVRVWDPITHN--IVRMFRLAKGPVNNILVVRRPLY  324 (451)
Q Consensus       270 ~~v~-~~~~~~~~~l~s~~~d----------------------g~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~~~~~  324 (451)
                      .... ++....+.+++.|+.+                      ..+.+||+.+.+  .+..+..  ......+...+++.
T Consensus       242 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i  319 (357)
T 2uvk_A          242 GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ--GRAYGVSLPWNNSL  319 (357)
T ss_dssp             CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS--CCBSSEEEEETTEE
T ss_pred             ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC--CcccceeEEeCCEE
Confidence            1111 1233336677777632                      247789987654  3333322  22223334457788


Q ss_pred             eeeccCCC
Q 012996          325 LNLGSFSN  332 (451)
Q Consensus       325 l~~~s~d~  332 (451)
                      ++.|+.++
T Consensus       320 ~v~GG~~~  327 (357)
T 2uvk_A          320 LIIGGETA  327 (357)
T ss_dssp             EEEEEECG
T ss_pred             EEEeeeCC
Confidence            88887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.021  Score=50.06  Aligned_cols=197  Identities=11%  Similarity=0.061  Sum_probs=105.0

Q ss_pred             CcEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEc--c-CCcEEEEe-eCCCcEEEeeCcchhhhhhhhccccc
Q 012996           92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFS--E-DGSFLISG-SEDGCVRIWSLLTVFEECESQRASHL  166 (451)
Q Consensus        92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~  166 (451)
                      +..+++++.||.|+-+|..+|+.+..+... ..++....-.  + ++..++.. +.||.|..++..++........    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~----   85 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI----   85 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH----
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc----
Confidence            346888899999999999999998887654 1232221100  1 23333343 5789999988765422110000    


Q ss_pred             ceecccCCcCceeE---EEE-----eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccccee--------EEEEC---
Q 012996          167 YLHSFTGHTLRITD---IVI-----GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID--------AIALD---  227 (451)
Q Consensus       167 ~~~~~~~~~~~i~~---i~~-----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~--------~~~~~---  227 (451)
                        ..+. ...++..   ..+     ...+  ..+++|+.+|.+...|+.+|+.+..+....+..        |....   
T Consensus        86 --~~lv-~~SP~~~~~~pvv~~~~~~~~~--g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           86 --RQLV-STSPLHLKTNIVVNDSGKIVED--EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             --HHHH-TTCSEEEECC----------CC--EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred             --ccce-eccccccCCCceeecccccccC--CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence              0000 1111211   000     0022  689999999999999999999999887432211        11110   


Q ss_pred             --CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--cee-EEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996          228 --PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVT-CLAYST-GDLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       228 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~-~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  301 (451)
                        ..+..++.|..+..+.+.+ +++. ...   .. ......+..  ++. +-..+. +.+ +.++.||.|.-+|..+|.
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~---~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~  233 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGA-SYN---VT-YSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI  233 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSC-CCC---CE-EEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCC-eEE---Ee-cccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence              1245677777777666666 2221 110   00 111111100  000 000011 334 557889999999988888


Q ss_pred             eEE
Q 012996          302 IVR  304 (451)
Q Consensus       302 ~~~  304 (451)
                      .+.
T Consensus       234 ~~W  236 (339)
T 2be1_A          234 ARW  236 (339)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.95  E-value=0.19  Score=44.69  Aligned_cols=231  Identities=12%  Similarity=0.053  Sum_probs=116.3

Q ss_pred             ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-----cCCCCeeEEEECCC---CcEEEEecc----C----
Q 012996           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKPIAANSH---GTYIAGGGQ----S----  101 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~l~~~~~----d----  101 (451)
                      .-..++  |.|+|+++++ ... |.|.+++.. +......     ........|+++|+   +..|.++..    +    
T Consensus        30 ~P~~ia--~~pdG~l~V~-e~~-g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIA--PLGGGRYLVT-ERP-GRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEE--EEETTEEEEE-ETT-TEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEE--EcCCCeEEEE-eCC-CEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            345566  9999985554 444 899998743 3311211     12356889999997   444444332    2    


Q ss_pred             CCEEEEEcCCC--c-----ce-eeecc-ccCCeeEEEEccCCcEEEEeeCC-------------CcEEEeeCcchhhhhh
Q 012996          102 GDIYMWEVASG--R-----LL-KKWHA-HYRAVTCLVFSEDGSFLISGSED-------------GCVRIWSLLTVFEECE  159 (451)
Q Consensus       102 g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~  159 (451)
                      +.|..|+....  .     .+ ..+.. .......+.|.|||.++++.+..             |.|.-++.........
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56777876544  1     11 11221 11134679999999877765432             3454444421000000


Q ss_pred             hhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCC---cEEEEEcCCCc------------------eeeee-e
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDR---TCKVWSLLKGR------------------LLRNI-V  216 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~---~i~iwd~~~~~------------------~~~~~-~  216 (451)
                      .  .....+. ..++. ....++|++ .+  .++++-....   .|.+..  .+.                  ++..+ .
T Consensus       185 p--f~~~~i~-a~G~r-np~Gla~d~~~g--~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          185 P--FPNSPIW-SYGHR-NPQGIDWHRASG--VMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             S--STTCCEE-EECCS-CCCEEEECTTTC--CEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             C--CCCCcEE-EEccC-CcceEEEeCCCC--CEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            0  0000111 12222 345788888 44  4444322221   233322  211                  11222 1


Q ss_pred             cccceeEEEEC-------CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee-eccCCcceeEEEEec-CCEEEEEc
Q 012996          217 FPSVIDAIALD-------PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       217 ~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                      .......++|.       .++.++++....+.|...++......      ..... +.+....+..+++.| |.++++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~------~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV------RKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE------EEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc------cceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            23456777874       46666766666778888888653110      10112 222245688888888 76665553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.76  E-value=0.52  Score=46.84  Aligned_cols=289  Identities=12%  Similarity=0.152  Sum_probs=151.9

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-----ecCCCCeeEEEE
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAA   88 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-----~~~~~~v~~~~~   88 (451)
                      .+..||..+.+...   ........|.++.  . .+|. +..++.  +.+..++..+......     ......|.++..
T Consensus        83 Gl~~yd~~~~~f~~---~~~~~~~~i~~i~--~-~~g~-lWigt~--~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~  153 (758)
T 3ott_A           83 GILVYNYRADRYEQ---PETDFPTDVRTMA--L-QGDT-LWLGAL--NGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIR  153 (758)
T ss_dssp             EEEEEETTTTEECC---CSCCCCSCEEEEE--E-ETTE-EEEEET--TEEEEEETTTCCEEEECHHHHCCSCSCEEEEEE
T ss_pred             CeEEEeCCCCEEEC---cccCCCceEEEEE--e-cCCc-EEEEcC--CcceeEeCCCCeEEEeccCCCCcCCCeEEEEEE
Confidence            47788877654322   1111223455543  2 3444 444444  3577888876654432     123457888888


Q ss_pred             CCCCcEEEEeccCCCEEEEEcCCCcceee-ecc----ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           89 NSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        89 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      .++|.+.+ |+.+ -|..++..+++.... ...    ....|.++...+++..|..|+. +-+..+|..+..        
T Consensus       154 d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~--------  222 (758)
T 3ott_A          154 TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ--------  222 (758)
T ss_dssp             CTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE--------
T ss_pred             cCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe--------
Confidence            88887665 3444 477888766543221 111    1234788888777665555654 457788874311        


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------cccceeEEEECCCCCEEEE
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~  235 (451)
                       ......+  ....|.++....++   .|..|+.+ -+.+++..+++......        ....|.++..+.++. |.+
T Consensus       223 -~~~~~~l--~~~~i~~i~~d~~g---~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi  294 (758)
T 3ott_A          223 -IKQTEAF--HNNSIKSLALDGNG---DLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWL  294 (758)
T ss_dssp             -EEEEEEE--EEEEEEEEEECTTC---CEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEE
T ss_pred             -EEeccCC--CCCeEEEEEEcCCC---CEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEE
Confidence             0011111  12356676655544   44555544 58888877654322111        123588888887775 555


Q ss_pred             EeCCCcEEEEEccCCCCCCCCCCceeeee--e--ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc--eEEEee--
Q 012996          236 GSRDGSIYIAALNAESPSTSSYGMHIIGS--L--SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRMFR--  307 (451)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~--  307 (451)
                      |+..| +.++.....        ......  .  ......|.++.-.....|..|+.+| +..++..++.  ....+.  
T Consensus       295 GT~~G-l~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~  364 (758)
T 3ott_A          295 GTDYG-ISLSRYNSA--------LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMG  364 (758)
T ss_dssp             EESSS-EEEECCCC---------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTT
T ss_pred             EeCCc-ccccccCCc--------eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccC
Confidence            66666 544432111        011100  0  0123468888777733444455555 6666655432  122222  


Q ss_pred             -----cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996          308 -----LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (451)
Q Consensus       308 -----~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~  342 (451)
                           .....|.++.-.++|..-+ |+ ++-+..++..+.
T Consensus       365 ~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~  402 (758)
T 3ott_A          365 DKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR  402 (758)
T ss_dssp             CSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred             CcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence                 1123588888777776444 33 345666765543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.75  E-value=0.16  Score=49.79  Aligned_cols=217  Identities=9%  Similarity=0.023  Sum_probs=105.0

Q ss_pred             CCeEEEECccCceeeee-e---cCCCCCCceEEecceEee-ccCcccCCCCCC-----ccEEEEECCCCceeeeec-C-C
Q 012996           13 TGIGCWDLESGAEQLRY-K---SCASPPHGLACVGQRFLA-SSQLREQPSASS-----GSILYWSWSKPQVEVKSL-P-A   80 (451)
Q Consensus        13 g~i~vwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~-----g~i~vw~~~~~~~~~~~~-~-~   80 (451)
                      ..+.+||..+++....- .   +....+..-.++.  ..+ +++.++.||.+.     ..+.+||..+........ + .
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~--~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~  489 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT--TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT  489 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEE--EETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEE--EEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC
Confidence            45888998876543321 1   0011111112222  332 677777776542     358888988765443321 1 1


Q ss_pred             CCeeEEEECCCCcEEEEeccCC--CEEEEEcCCCcceee-----eccccCCeeEEEEccC-CcEEEEeeC--C-----Cc
Q 012996           81 EPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLKK-----WHAHYRAVTCLVFSED-GSFLISGSE--D-----GC  145 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~-~~~l~s~~~--d-----g~  145 (451)
                      ..-.+++...++.+++.|+.++  .+.+||..+..-...     +........++.+..+ ++.++.||.  +     ..
T Consensus       490 R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~  569 (695)
T 2zwa_A          490 RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK  569 (695)
T ss_dssp             CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred             cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence            1122333334788888887755  699999877642221     1112222233555554 677777776  2     35


Q ss_pred             EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--------CCcEEEEEcCCCceeeeeec
Q 012996          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------DRTCKVWSLLKGRLLRNIVF  217 (451)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~--------d~~i~iwd~~~~~~~~~~~~  217 (451)
                      +.+||+.+..- .  .......+.........-.+++...++  .+++.|+.        ...+.+||+.+.+-. ....
T Consensus       570 v~~yd~~~~~w-~--~~~~W~~~~~~p~~~R~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~  643 (695)
T 2zwa_A          570 AIIFKYDAENA-T--EPITVIKKLQHPLFQRYGSQIKYITPR--KLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPI  643 (695)
T ss_dssp             EEEEEECTTCS-S--CCEEEEEEEECGGGCCBSCEEEEEETT--EEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCC
T ss_pred             EEEEEccCCcc-c--cceEEEEcCCCCCCCcccceEEEeCCC--EEEEECCccCCCCCCCCCeEEEEECCCCeEE-Eeec
Confidence            88888865220 0  000011111100001011122233324  67777774        346899999887654 2222


Q ss_pred             ccce----------eEEEECCCCCEEEEEe
Q 012996          218 PSVI----------DAIALDPAEHVFYAGS  237 (451)
Q Consensus       218 ~~~i----------~~~~~~~~~~~l~~~~  237 (451)
                      +...          .+.+..+++++++.|+
T Consensus       644 p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG  673 (695)
T 2zwa_A          644 SRRIWEDHSLMLAGFSLVSTSMGTIHIIGG  673 (695)
T ss_dssp             CHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred             cccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence            2211          3344445556766665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.73  E-value=0.25  Score=48.52  Aligned_cols=200  Identities=13%  Similarity=0.142  Sum_probs=101.8

Q ss_pred             CCCcEEEEeccC----CCEEEEEcCCCcceeee--------ccccCCeeEEEEcc-CCcEEEEeeCCC------cEEEee
Q 012996           90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKW--------HAHYRAVTCLVFSE-DGSFLISGSEDG------CVRIWS  150 (451)
Q Consensus        90 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~-~~~~l~s~~~dg------~i~vwd  150 (451)
                      .++.+++.|+.+    ..+.+||..+++-...-        ...... .+++..+ +++.++.||.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            456777777753    45889998776433221        111112 2333333 677888887643      467788


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC--cEEEEEcCCCceeeeee-----cc-ccee
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR--TCKVWSLLKGRLLRNIV-----FP-SVID  222 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~-----~~-~~i~  222 (451)
                      ..+.         ....+......... .+++...++  .+++.|+.++  .+.+||+.+..-...-.     .+ ....
T Consensus       475 ~~t~---------~W~~~~~~p~~R~~-h~~~~~~~~--~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~  542 (695)
T 2zwa_A          475 MKTR---------EWSMIKSLSHTRFR-HSACSLPDG--NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA  542 (695)
T ss_dssp             TTTT---------EEEECCCCSBCCBS-CEEEECTTS--CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC
T ss_pred             CCCC---------cEEECCCCCCCccc-ceEEEEcCC--EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee
Confidence            7541         12222111111111 112221244  6777777655  68999998765433221     11 1223


Q ss_pred             EEEECCC-CCEEEEEeC--C-----CcEEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEecCCEEEEEcCC----
Q 012996          223 AIALDPA-EHVFYAGSR--D-----GSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSED----  289 (451)
Q Consensus       223 ~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~s~~~d----  289 (451)
                      ++.+..+ +.+++.|+.  +     ..+..||+.+..- .....+..+.... ........+.+..+.+++.||.+    
T Consensus       543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCC
T ss_pred             EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCC
Confidence            3555555 667777765  2     3588999887641 0111122222211 11112222333226777777743    


Q ss_pred             ----CcEEEEeCCCCceE
Q 012996          290 ----GMVRVWDPITHNIV  303 (451)
Q Consensus       290 ----g~i~iwd~~~~~~~  303 (451)
                          ..|.+||+.+.+-.
T Consensus       622 ~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          622 FDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CCTTTSEEEEETTTTEEE
T ss_pred             CCCCCeEEEEECCCCeEE
Confidence                45899998876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.65  E-value=0.032  Score=45.03  Aligned_cols=145  Identities=11%  Similarity=-0.004  Sum_probs=80.9

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce------eeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL------KKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                      ..+..++|+|+|.+.++  .+|.++-.+..+....      ..+-  +-. ...++.|.|+|.+.++  .||.|.-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            47789999999997777  6777666665442211      1110  111 1478999999987777  56988877753


Q ss_pred             chhhhhhhhcccccceec--c--cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee------eeee--cccc
Q 012996          153 TVFEECESQRASHLYLHS--F--TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL------RNIV--FPSV  220 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~--~~~~  220 (451)
                      +..        ....+..  .  ..-=..+..+.+.|++  . |.... |+.++-....++...      ..+.  .-..
T Consensus       116 ~~~--------~~~Wl~~a~~vg~~gw~~~~~lff~p~G--~-Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~  183 (236)
T 1tl2_A          116 QSD--------TDNWIARATEVGSGGWSGFKFLFFHPNG--Y-LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDT  183 (236)
T ss_dssp             CST--------TCCHHHHSEEEECSSGGGEEEEEECTTS--C-EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred             cCC--------CCceeccccEeccCCCCceEEEEECCCc--e-EEEEe-CCcEEecCCCCCCCcccccccceeccCCcce
Confidence            210        1111110  0  1111356788888887  4 44444 777654433322211      1111  1123


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEE
Q 012996          221 IDAIALDPAEHVFYAGSRDGSIYI  244 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i  244 (451)
                      ..-+.|.|++.+.++.  +|.++-
T Consensus       184 yr~l~f~~~G~l~~v~--~g~~Y~  205 (236)
T 1tl2_A          184 FKFLFFSSVGTLFGVQ--GGKFYE  205 (236)
T ss_dssp             EEEEEECTTSCEEEEE--TTEEEE
T ss_pred             EEEEEECCCCcEEEEe--CCeEEe
Confidence            3446788998887776  674443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.32  E-value=0.53  Score=41.75  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=54.3

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-ee------ecCCCCeeEEEECCC---CcEEEEe-cc-------
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VK------SLPAEPIKPIAANSH---GTYIAGG-GQ-------  100 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~------~~~~~~v~~~~~~~~---~~~l~~~-~~-------  100 (451)
                      -..++  |.|+|+.+.++... |.|++++.+..... ..      .........|+++|+   +..|.+. ..       
T Consensus        20 P~~i~--~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           20 PWALA--FLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             EEEEE--ECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             cEEEE--EcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            34555  99999834444455 89999985432111 11      112346789999995   4444333 22       


Q ss_pred             CCCEEEEEcCCCc----cee----eecc---ccCCeeEEEEccCCcEEEEeeC
Q 012996          101 SGDIYMWEVASGR----LLK----KWHA---HYRAVTCLVFSEDGSFLISGSE  142 (451)
Q Consensus       101 dg~i~iwd~~~~~----~~~----~~~~---~~~~v~~~~~~~~~~~l~s~~~  142 (451)
                      ...|..|++..+.    ...    .+..   .......+.|.|||.+.++.+.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            2356666664321    111    1111   1112357999999976666443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.20  E-value=0.51  Score=40.32  Aligned_cols=223  Identities=15%  Similarity=0.043  Sum_probs=117.7

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...|..|+...... ++. . ||.|+.|-....-.+..-......|..++...+.. ++. . ||.|..|-.......  
T Consensus        23 ~~~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gql--   94 (282)
T 3qhy_B           23 QSGVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQT--   94 (282)
T ss_dssp             SSSCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTT--
T ss_pred             cCCCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCC--
Confidence            34688888765433 333 4 89999998655433322222334677777764332 333 4 899999976431110  


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-CceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                           ..+..    -...|..++....    ..+.-. +|.|+.|-... ++.-........|..++.......+  -. 
T Consensus        95 -----g~P~~----~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-  157 (282)
T 3qhy_B           95 -----TVPAE----ARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-  157 (282)
T ss_dssp             -----CCCGG----GSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-
T ss_pred             -----CCCcc----cCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-
Confidence                 00000    1235666665443    333344 99999997654 2322222234456666654433322  23 


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV  318 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (451)
                      ||.++.|-.........         .......|..++......++.  .||.|..|-....-.+..-......|..++.
T Consensus       158 ~G~v~~wG~n~~gqlg~---------p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~  226 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTV---------PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS  226 (282)
T ss_dssp             TTEEEEEECCTTSTTSC---------CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred             CCEEEEecCCCCCCCCC---------ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc
Confidence            79999998765432211         001134567766554333444  6999999976543222111111235666665


Q ss_pred             EecCceeeeccCCCCccccccCC
Q 012996          319 VRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       319 s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      .......++   ||.+..|-...
T Consensus       227 G~~h~~al~---~g~v~~wG~n~  246 (282)
T 3qhy_B          227 GEWYSLALK---NGKVIAWGSSR  246 (282)
T ss_dssp             CSSCEEEEE---TTEEEEESTTC
T ss_pred             CCCEEEEEE---CCEEEEecCCC
Confidence            443333232   78888887554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.10  E-value=0.3  Score=45.09  Aligned_cols=109  Identities=8%  Similarity=0.009  Sum_probs=61.0

Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--eee-------cccceeEEEECCC---CCEEEEEeC----
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIV-------FPSVIDAIALDPA---EHVFYAGSR----  238 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~-------~~~~i~~~~~~~~---~~~l~~~~~----  238 (451)
                      -....+|+|.+++  +++++-...+.|++++..++....  .+.       .......++|+|+   +..|+++..    
T Consensus        26 l~~P~~~a~~pdG--~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCC--cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            3355789999987  665554444578888865554322  121       1345668999996   666666543    


Q ss_pred             ---------CCcEEEEEccCCCCCCCCCCceeee-eec-cCCcceeEEEEec-CCEEEEEc
Q 012996          239 ---------DGSIYIAALNAESPSTSSYGMHIIG-SLS-DHSKAVTCLAYST-GDLLISGS  287 (451)
Q Consensus       239 ---------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~~~~~-~~~l~s~~  287 (451)
                               ...|.-|+........  ...+.+. .+. ........|+|.| |.+.++.+
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~--~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTL--EKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEE--EEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCc--CCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                     2356666654321100  0011111 121 1224578999999 77766654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.04  E-value=0.46  Score=38.44  Aligned_cols=110  Identities=11%  Similarity=-0.013  Sum_probs=61.8

Q ss_pred             CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~  202 (451)
                      ..+.+++|+|++.+.++  .+|.+.-.+..+....  .-......+-. .+-.. -..+.|.+++  .+.++  .||.|+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~--~W~~s~t~IG~-~Gw~~-F~a~~fD~~G--~LYav--~dG~iy  110 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND--NWMGRAKKIGN-GGWNQ-FQFLFFDPNG--YLYAV--SKDKLY  110 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC--CHHHHCEEEEC-SCGGG-CSEEEECTTS--CEEEE--ETTEEE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc--cccccccEecc-ccccc-ceEEEECCCC--CEEEe--CCCEEE
Confidence            46789999999986665  6777666665321000  00000000100 01111 3577788776  45555  569998


Q ss_pred             EEEcCCCceeeee-----ecc---cceeEEEECCCCCEEEEEeCCCcEEE
Q 012996          203 VWSLLKGRLLRNI-----VFP---SVIDAIALDPAEHVFYAGSRDGSIYI  244 (451)
Q Consensus       203 iwd~~~~~~~~~~-----~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (451)
                      -++..+.....-+     ...   ..+..+.+.|+|.+.++.  |+.++-
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            8876442221111     111   467999999999988877  777543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.76  E-value=1.3  Score=41.35  Aligned_cols=112  Identities=9%  Similarity=0.069  Sum_probs=69.0

Q ss_pred             CCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhh--cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996          123 RAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQ--RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR  199 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~  199 (451)
                      .....+.++|||++++.++. +.++.++|++.........  ........... -.......+|.++|  +...|.-.|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G--~aYTtlfidS  399 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG--NAYTTLFIDS  399 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS--EEEEEETTTT
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC--ceEeeeeecc
Confidence            34467889999999876654 7899999997643322111  01111122222 23344566777766  6667777899


Q ss_pred             cEEEEEcCCC----------ceeeeeecccceeEEEE------CCCCCEEEEEe
Q 012996          200 TCKVWSLLKG----------RLLRNIVFPSVIDAIAL------DPAEHVFYAGS  237 (451)
Q Consensus       200 ~i~iwd~~~~----------~~~~~~~~~~~i~~~~~------~~~~~~l~~~~  237 (451)
                      .|.-|++...          ..+..+.-...+-.+.-      .|+|++|++..
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            9999998653          34444543344444433      57899998875

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.41  E-value=1.7  Score=40.51  Aligned_cols=301  Identities=11%  Similarity=0.061  Sum_probs=162.8

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCC---------------------------CCCceEEecceEeeccCcccCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------------------PPHGLACVGQRFLASSQLREQP   56 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~~~l~~~   56 (451)
                      .+.||+ ..|.|+|+-+.+++.+..+.-+..                           |.-.+....  =..||++|..-
T Consensus        72 ~f~SgG-~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfiN  148 (638)
T 3sbq_A           72 GFWSGG-HQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFIN  148 (638)
T ss_dssp             EEEECG-GGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEEE
T ss_pred             EEeecC-cCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEEe
Confidence            467788 999999999999999887754321                           111122112  12467777766


Q ss_pred             CCCCccEEEEECCCCcee--eeecCCCCeeEEEEC--CCCcEEEEeccC-------CCEEEEEcCCCcceeeec---cc-
Q 012996           57 SASSGSILYWSWSKPQVE--VKSLPAEPIKPIAAN--SHGTYIAGGGQS-------GDIYMWEVASGRLLKKWH---AH-  121 (451)
Q Consensus        57 ~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~--~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~---~~-  121 (451)
                      ...+..|..-+++..+..  ........+..++|-  |+..|+++++..       |..  ..+...+....+.   +. 
T Consensus       149 dkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~t  226 (638)
T 3sbq_A          149 DKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAET  226 (638)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTT
T ss_pred             cCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCc
Confidence            655567777777765543  334456788999986  788888887653       221  1001111111111   10 


Q ss_pred             ---------cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-------
Q 012996          122 ---------YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-------  185 (451)
Q Consensus       122 ---------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-------  185 (451)
                               .+........+++.+.++.+.+..--+                  .+.... ....=..+.|..       
T Consensus       227 m~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~------------------~l~em~-~~e~D~~~vfn~~~ie~~v  287 (638)
T 3sbq_A          227 MEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAF------------------DLGGMM-RNERDWVVVFDIHAVEAAV  287 (638)
T ss_dssp             CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCS------------------SHHHHT-CSSCEEEEEEEHHHHHHHH
T ss_pred             cEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCc------------------ChhhcC-cccccEEEEecHHHHHHHH
Confidence                     111112223334444444333211000                  000000 011112222221       


Q ss_pred             -cCCeeEEEEeeCCC-cEEEEEcCC----C-ceeeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCC----
Q 012996          186 -GGVSATIVSASEDR-TCKVWSLLK----G-RLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPS----  253 (451)
Q Consensus       186 -~~~~~~l~s~~~d~-~i~iwd~~~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~----  253 (451)
                       .|.  +-.   ..| .|.+.|.+.    + .....+..+.....+.++|+|+++++++ -+.++.++|+......    
T Consensus       288 k~G~--~~~---~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k  362 (638)
T 3sbq_A          288 KAGD--FIT---LGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK  362 (638)
T ss_dssp             HTTC--CBC---CTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC
T ss_pred             hcCC--eEE---ECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc
Confidence             221  111   121 478888876    3 3445556778888999999999988876 4678999998752100    


Q ss_pred             CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC----------ceEEEeecCCCCeeEEEE----
Q 012996          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----------NIVRMFRLAKGPVNNILV----  318 (451)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~----  318 (451)
                      ............. -.-.....+|.+ |....+..-|..|.-|++...          ..+..+..|-.+ -.+.-    
T Consensus       363 ~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~ge  440 (638)
T 3sbq_A          363 LADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCE  440 (638)
T ss_dssp             CSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTT
T ss_pred             ccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCc
Confidence            0000001122222 234567788998 866667778999999998653          456667665443 33333    


Q ss_pred             --EecCceeeeccCCCCcc
Q 012996          319 --VRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       319 --s~~~~~l~~~s~d~~i~  335 (451)
                        .|||++|++...-..=|
T Consensus       441 t~~~dGk~lv~lnK~skdr  459 (638)
T 3sbq_A          441 TNEADGKWLVALSKFSKDR  459 (638)
T ss_dssp             STTCCSCEEEEEESCCTTS
T ss_pred             cCCCCccEEEEeccccccc
Confidence              58999999875433333

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.36  E-value=1.3  Score=38.89  Aligned_cols=150  Identities=16%  Similarity=0.127  Sum_probs=83.0

Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--ee-----ecccceeEEEECCC---CCEEEEE---eCCCc
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NI-----VFPSVIDAIALDPA---EHVFYAG---SRDGS  241 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~-----~~~~~i~~~~~~~~---~~~l~~~---~~dg~  241 (451)
                      -.....|+|.+++  .++++--..|.|++++...+....  .+     ........++++|+   +..|++.   ..++.
T Consensus        31 L~~P~~ia~~pdG--~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGG--DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCceEEEEcCCC--cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3456789999987  666655558999999876554321  11     12456789999995   5556554   24456


Q ss_pred             EEEEEccCCCCC-CCCCCceee-eeec-cCCcceeEEEEec-CCEEEEEcC-------------CCcEEEEeCCCCc---
Q 012996          242 IYIAALNAESPS-TSSYGMHII-GSLS-DHSKAVTCLAYST-GDLLISGSE-------------DGMVRVWDPITHN---  301 (451)
Q Consensus       242 i~i~d~~~~~~~-~~~~~~~~~-~~~~-~~~~~v~~~~~~~-~~~l~s~~~-------------dg~i~iwd~~~~~---  301 (451)
                      |.-|.+...... ......+.+ ..+. ........|.|.| +.+.++.+.             -|.|.-.+....-   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            666666542210 000011211 1121 2223456799999 777666542             3555555543210   


Q ss_pred             ----eEEEee-cCCCCeeEEEEEecCceeee
Q 012996          302 ----IVRMFR-LAKGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       302 ----~~~~~~-~~~~~v~~l~~s~~~~~l~~  327 (451)
                          ....+. +| .....++|+|+|.+.++
T Consensus       189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             CSSTTCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred             CCCCCCeEEeeCC-CCcceEEECCCCCEEEE
Confidence                011122 33 24578999998766554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.97  E-value=1.6  Score=37.63  Aligned_cols=238  Identities=8%  Similarity=0.042  Sum_probs=120.6

Q ss_pred             EeeccCcccCCC-CCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC--------------CCEEEEEcC
Q 012996           46 FLASSQLREQPS-ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--------------GDIYMWEVA  110 (451)
Q Consensus        46 ~~~~~~~l~~~~-~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~  110 (451)
                      |+.++..+.... .+++.|...+.+.........  ..  +--++++|.+|.-....              ..|+..++.
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            455565555543 223666666665544332221  22  33457888888766543              357777766


Q ss_pred             CCcceeeeccccCCeeEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (451)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (451)
                      .++... +..  .  .+..|+++++.|+-..  .++.-.||.+..         ... ....+..+..    ..+++.+.
T Consensus        97 g~~~~~-l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~---------dGs-~~~~lt~~~~----~~~~~~g~  157 (302)
T 3s25_A           97 GHGSTV-LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRI---------DGE-EKKKIKNHYL----FTCNTSDR  157 (302)
T ss_dssp             SCCCEE-EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEET---------TSC-CCEEEESSCC----CCSEEETT
T ss_pred             CCcceE-eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEEC---------CCC-CeEEEeCCCc----eEeeEECC
Confidence            554322 221  1  1236777888888665  344444444321         111 1122222322    34567763


Q ss_pred             eeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC--CcEEEEEccCCCCCCCCCCceeeeeec
Q 012996          189 SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLS  266 (451)
Q Consensus       189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (451)
                       .+.++......|...++..+.....+.  .... ..++|++.+|+-....  ..|..-++....          ...+.
T Consensus       158 -~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~----------~~~Lt  223 (302)
T 3s25_A          158 -YFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN----------PVVLT  223 (302)
T ss_dssp             -EEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC----------CEECS
T ss_pred             -EEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC----------eEEEe
Confidence             344454446788888887655433322  2222 2355888888766544  356666666543          11222


Q ss_pred             cCCcceeEEEEec-CCEEEEEc--CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996          267 DHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       267 ~~~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  329 (451)
                      .  ..+  ..|+| +..|.-++  ..+.|..-++.-.. .+.+...  .+.  .+++.+.+|+-..
T Consensus       224 ~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~--~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          224 E--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAKG--EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             C--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEES--CEE--EEEECSSEEEEEE
T ss_pred             C--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeCC--ccc--eEEEeCCEEEEEE
Confidence            1  223  23677 77776553  34566666665333 2333221  233  4555666665543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.62  E-value=2.7  Score=38.65  Aligned_cols=60  Identities=10%  Similarity=0.099  Sum_probs=38.9

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce--eeecc------ccCCeeEEEEccC---CcEEEEe
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KKWHA------HYRAVTCLVFSED---GSFLISG  140 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~s~  140 (451)
                      .....|+|.|+|+++++-...+.|++++..++...  ..+..      ..+....|+|+|+   +..|+.+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            46689999999998777544456888876555432  22221      2456779999995   4444443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.52  E-value=2.6  Score=37.91  Aligned_cols=134  Identities=7%  Similarity=-0.032  Sum_probs=66.0

Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cc----cceeEEEECC-CCCEEEEEeC-----------
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FP----SVIDAIALDP-AEHVFYAGSR-----------  238 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~----~~i~~~~~~~-~~~~l~~~~~-----------  238 (451)
                      .+.++.+.+... ..++.++..+ |...+- .++.-..+.  .+    ..+.+++++| +...+++++.           
T Consensus       233 ~~~~i~~~~~~~-~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~  309 (394)
T 3b7f_A          233 DPHCVVQHPAAP-DILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSP  309 (394)
T ss_dssp             CEEEEEECSSST-TEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBC
T ss_pred             ceeEEEECCCCC-CEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecC
Confidence            477888877532 3555565544 444432 233322222  12    2356788887 4455555542           


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeee-eccCC----cceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGS-LSDHS----KAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG  311 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~----~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (451)
                      ++...+|........     +..+.. +....    .....++++|  ...|+.++.++.|..-+ ..++--..+..+..
T Consensus       310 ~~~~~~~~S~DgG~t-----W~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp  383 (394)
T 3b7f_A          310 GGKPAVYVTRDAGES-----WQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLP  383 (394)
T ss_dssp             CSSCCEEEESSTTSC-----CEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCS
T ss_pred             CCceeEEEECCCCCC-----ceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCC
Confidence            233455554443211     122111 11100    0123578877  35577776666655433 44555555555555


Q ss_pred             CeeEEEEE
Q 012996          312 PVNNILVV  319 (451)
Q Consensus       312 ~v~~l~~s  319 (451)
                      .+.++.|.
T Consensus       384 ~~~~v~~~  391 (394)
T 3b7f_A          384 HIYAVQSA  391 (394)
T ss_dssp             CEEEEEEE
T ss_pred             CeeEEEEe
Confidence            67777765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.23  E-value=2.3  Score=36.20  Aligned_cols=221  Identities=15%  Similarity=0.112  Sum_probs=117.0

Q ss_pred             ccEEEEECCCC-ceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEE
Q 012996           61 GSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS  139 (451)
Q Consensus        61 g~i~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  139 (451)
                      |.|..|-.+.. +.-........|..++...+.. ++. . ||.|+.|-....-.+..-..-...|..++...+  +.+.
T Consensus        42 G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~a  116 (282)
T 3qhy_B           42 GKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA  116 (282)
T ss_dssp             TEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEE
T ss_pred             CEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEE
Confidence            99999986532 2222222235788888765433 333 4 899999986543332222222346777777644  3344


Q ss_pred             eeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeeecc
Q 012996          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFP  218 (451)
Q Consensus       140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~  218 (451)
                      -. ||.|..|-.......         .  ........|..++....   ..++ -. ||.|+.|-... ++.-......
T Consensus       117 l~-~G~v~~wG~n~~gql---------g--~~~~~~~~i~~i~~G~~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~  179 (282)
T 3qhy_B          117 LK-DGKVIAWGDDSDGQT---------T--VPAEAQSGVTALDGGVY---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQ  179 (282)
T ss_dssp             EE-TTEEEEEECCTTSTT---------S--CCGGGGSSEEEEEECSS---EEEE-EE-TTEEEEEECCTTSTTSCCGGGG
T ss_pred             Ee-CCeEEEecCCCCCcC---------C--CCccCCCCeEEEEcccC---EEEE-EE-CCEEEEecCCCCCCCCCceecC
Confidence            44 899999976431110         0  00112234666654332   2333 33 79999997654 2221111234


Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC
Q 012996          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~  298 (451)
                      ..|..++...... ++.  .+|.++.|-.........     +.    .....|..++-.....++..  ||.|..|-..
T Consensus       180 ~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-----p~----~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n  245 (282)
T 3qhy_B          180 SGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-----PT----EALSGVSAIASGEWYSLALK--NGKVIAWGSS  245 (282)
T ss_dssp             SSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-----CG----GGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred             CCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-----Cc----ccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence            5567776654433 333  599999998765432211     00    11235667765543344443  9999999866


Q ss_pred             CCceEEEeecCCCCeeEEEEEec
Q 012996          299 THNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       299 ~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      ...++..    ...|..++....
T Consensus       246 ~~gq~~v----~~~v~~iaaG~~  264 (282)
T 3qhy_B          246 RTAPSSV----QSGVSSIEAGPN  264 (282)
T ss_dssp             CCCCGGG----SSCEEEEEECSS
T ss_pred             CCccccC----CCCcEEEEECcC
Confidence            5433321    224555554443

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=93.64  E-value=3.2  Score=35.87  Aligned_cols=205  Identities=9%  Similarity=0.028  Sum_probs=112.1

Q ss_pred             CCCCcEEEEeccCCCEEEEEcCCCccee---------eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           89 NSHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        89 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      -++..++++.+.+|.|+--.+..-+...         .++. .+.+..+........++..+..|.++-+..........
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence            3566778888999999988765432211         1222 23444554444556778888889877776643211100


Q ss_pred             hhcccccc---eecccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCC-------CceeeeeecccceeEEEECC
Q 012996          160 SQRASHLY---LHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLK-------GRLLRNIVFPSVIDAIALDP  228 (451)
Q Consensus       160 ~~~~~~~~---~~~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~i~~~~~~~  228 (451)
                      .  ....+   ...+. ....|.++....+ .....++..+..|.++...+..       |.....+.....+..+....
T Consensus        84 ~--~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~  160 (312)
T 1suu_A           84 A--SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF  160 (312)
T ss_dssp             ------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC
T ss_pred             c--CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC
Confidence            0  11111   11122 2234555433321 1126788889999999887643       22222233344555555545


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      .+..++..+.+|....+....-..............+.. ...|.++..-+ +..+++.+..|..+..++.
T Consensus       161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            566788889999999998866322211111122223332 34555555544 6778888999998888764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.51  E-value=4.6  Score=37.20  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=34.2

Q ss_pred             CCeeEEEECCCCc-EEEEeccCCCEEEEEcCCC---cceeeec---------cccCCeeEEEEccC
Q 012996           81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASG---RLLKKWH---------AHYRAVTCLVFSED  133 (451)
Q Consensus        81 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~  133 (451)
                      .....|+|.|+|. .|+++...|.|++++....   ..+..+.         ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4568999999996 3444577899999974322   1122111         11456789999996

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.94  E-value=4.9  Score=36.00  Aligned_cols=153  Identities=12%  Similarity=0.089  Sum_probs=72.8

Q ss_pred             CCCCeeEEEECC--CCcEEEEeccCC----CEEEEEcCCCcceeeec------c--------ccCCeeEEEEcc-C-CcE
Q 012996           79 PAEPIKPIAANS--HGTYIAGGGQSG----DIYMWEVASGRLLKKWH------A--------HYRAVTCLVFSE-D-GSF  136 (451)
Q Consensus        79 ~~~~v~~~~~~~--~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~v~~~~~~~-~-~~~  136 (451)
                      ....|.+|++.|  .+.+.+ ++..|    .|...+ ..++.-..+.      .        +...|.++++.| + ...
T Consensus        53 ~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~  130 (394)
T 3b7f_A           53 LGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGT  130 (394)
T ss_dssp             TTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTC
T ss_pred             CCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCE
Confidence            456799999998  455444 44444    343332 2232211111      0        112477888886 2 455


Q ss_pred             EEEeeCCCcEEEeeCcchhhhhhhhcccccceecc----------------cCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF----------------TGHTLRITDIVIGYGGVSATIVSASEDRT  200 (451)
Q Consensus       137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~  200 (451)
                      +..++..+.|...+-..         .....+...                ......+.+|.+.+... ..++.+..++.
T Consensus       131 l~~g~~~ggl~~S~DgG---------~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~-~~l~vg~~~gg  200 (394)
T 3b7f_A          131 WYAGTSPQGLFRSTDHG---------ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDP-KHLYIGMSSGG  200 (394)
T ss_dssp             EEEEEETTEEEEESSTT---------SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCT-TCEEEEEETBE
T ss_pred             EEEEecCCcEEEEcCCC---------CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCC-CEEEEEECCCC
Confidence            66666555554442110         001111100                01234577888876432 33444444444


Q ss_pred             EEEEEcCCCceeeeeec--------------ccceeEEEECCC-CCEEEEEeCCCcEEEE
Q 012996          201 CKVWSLLKGRLLRNIVF--------------PSVIDAIALDPA-EHVFYAGSRDGSIYIA  245 (451)
Q Consensus       201 i~iwd~~~~~~~~~~~~--------------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~  245 (451)
                      |...+ ..++.-..+..              ...+.++.++|. ...+++++..+ |+..
T Consensus       201 l~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s  258 (394)
T 3b7f_A          201 VFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM  258 (394)
T ss_dssp             EEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred             EEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence            44332 12222222110              134789999985 46777776555 4443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=92.61  E-value=4.8  Score=35.02  Aligned_cols=209  Identities=9%  Similarity=0.029  Sum_probs=111.7

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEc---CC------Ccceee---eccccCCeeEEEEcc---CCcEEEEeeCCCcE
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEV---AS------GRLLKK---WHAHYRAVTCLVFSE---DGSFLISGSEDGCV  146 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~---~~------~~~~~~---~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i  146 (451)
                      .+..+........|+.-+..|.++-...   ..      |..+..   +. ....|..+...+   +..+++.++.+|.+
T Consensus        43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i  121 (327)
T 3uc1_A           43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV  121 (327)
T ss_dssp             CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred             EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence            3444444344445555566666554443   22      222111   22 234555554333   57799999999999


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC--CC---------ceeeee
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL--KG---------RLLRNI  215 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~--~~---------~~~~~~  215 (451)
                      +--.+.......    ........+.. ...+..+......  ..++..+..|.+..+...  .-         ...-.+
T Consensus       122 Kr~~l~~~~~~~----r~G~~~i~lke-~D~lv~~~~~~~~--d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L  194 (327)
T 3uc1_A          122 KKSKLTDFDSNR----SGGIVAVNLRD-NDELVGAVLCSAG--DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF  194 (327)
T ss_dssp             EEEEGGGGCCCC----SSCEESCBCCT-TCCEEEEEEECTT--CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC
T ss_pred             EEeEHHHhhccc----cCceEEEEECC-CCEEEEEEEecCC--CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC
Confidence            998875532110    01111222333 3445555444444  567788888988887765  21         111222


Q ss_pred             ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (451)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i  294 (451)
                      .....|.++...+.+..++..+..|.++...+..-..............+..-...+..+.... ...++..+.+|.+.-
T Consensus       195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir  274 (327)
T 3uc1_A          195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIR  274 (327)
T ss_dssp             CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred             CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence            3445677777666777899999999999888765432111101111112222123344444444 566667777887777


Q ss_pred             EeCC
Q 012996          295 WDPI  298 (451)
Q Consensus       295 wd~~  298 (451)
                      ++..
T Consensus       275 ~~~~  278 (327)
T 3uc1_A          275 TAAR  278 (327)
T ss_dssp             EEGG
T ss_pred             Eehh
Confidence            7654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.31  E-value=5  Score=34.49  Aligned_cols=175  Identities=10%  Similarity=0.084  Sum_probs=94.3

Q ss_pred             EeeccCcccCCCCC-------------CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec--cC--CCEEEEE
Q 012996           46 FLASSQLREQPSAS-------------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG--QS--GDIYMWE  108 (451)
Q Consensus        46 ~~~~~~~l~~~~~d-------------~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g~i~iwd  108 (451)
                      ++++|.+|.-+...             ...|+..+++..+......  ..  +..|++++++|+-..  .+  ..|+..+
T Consensus        60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~  135 (302)
T 3s25_A           60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIR  135 (302)
T ss_dssp             EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred             EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence            66777777766443             2567777877665433322  22  336778888887665  23  3455556


Q ss_pred             cCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996          109 VASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (451)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (451)
                      +. +.....+..+..    ..|+++++.|+-.+. ...|.+.++...         ....+  +.+   ... ..+.|.+
T Consensus       136 ~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~---------~~~~l--~~~---~~~-~~~~P~g  195 (302)
T 3s25_A          136 ID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ---------SEALF--YDC---NCY-KPVVLDD  195 (302)
T ss_dssp             TT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT---------EEEEE--ECS---CEE-EEEEEET
T ss_pred             CC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC---------CEEEE--eCC---Ccc-ceeeecC
Confidence            54 333444443332    345677777775544 567777777431         11111  121   111 2355776


Q ss_pred             CeeEEEEeeCC--CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC--CCcEEEEEccCC
Q 012996          188 VSATIVSASED--RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR--DGSIYIAALNAE  250 (451)
Q Consensus       188 ~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~  250 (451)
                        .+|+-....  ..|..-++.... ...+. ...+  ..|+|++..|+-+..  .+.|...++...
T Consensus       196 --~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          196 --TNVYYMDVNRDNAIVHVNINNPN-PVVLT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             --TEEEEEEGGGTTEEEEECSSSCC-CEECS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             --CEEEEEEcCCCcEEEEEECCCCC-eEEEe-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence              455544433  356666665443 22222 2223  347788888876532  356777777654

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=92.02  E-value=5.5  Score=34.39  Aligned_cols=194  Identities=8%  Similarity=0.036  Sum_probs=109.0

Q ss_pred             eccCcccCCCCCCccEEEEECCCCce---------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC------
Q 012996           48 ASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG------  112 (451)
Q Consensus        48 ~~~~~l~~~~~d~g~i~vw~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------  112 (451)
                      ++..++++.+.+ |.|+--....-..         .......+.+..+........++..+..|.++-+....-      
T Consensus         6 ~~e~~~v~~T~~-G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKK-GFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETT-CBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCC-CEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            445555555666 7777665432211         111123455555555555566767788888777765321      


Q ss_pred             ---cc---eeeeccccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          113 ---RL---LKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       113 ---~~---~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                         ..   ...+. ....|..+...+   ++.+|+..+.+|.++...+.......    ........+.. ...+..+..
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r----~~G~~~i~L~~-~d~lv~~~~  158 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK----SRGVIVIKLND-KDFVTSAEI  158 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------CEECBCCCT-TCCEEEEEE
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC----CCcEEEEecCC-CCEEEEEEE
Confidence               11   11122 223455543332   46678888999999999886532211    12222233443 455666655


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCCC-------ceeee--eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLKG-------RLLRN--IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      ....  ..++..+.+|.+..+....-       +-+.-  +.....+.++..-+++..+++.+..|.....++..-
T Consensus       159 ~~~~--~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~  232 (312)
T 1suu_A          159 VFKD--EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI  232 (312)
T ss_dssp             ECTT--CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred             eCCC--CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence            5433  57888889999888876431       11222  223455666665556667888899999999888653

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=91.84  E-value=6.5  Score=34.85  Aligned_cols=159  Identities=11%  Similarity=0.000  Sum_probs=89.5

Q ss_pred             ECCCCcEEEEeccCCCEEEEEcCCC---------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           88 ANSHGTYIAGGGQSGDIYMWEVASG---------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        88 ~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      +-|+..++++.+.+|.|+--.+...         ..-..++ ....+..+........|+..+..|.+.-+.........
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~   81 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence            3467788999999999998655321         1112233 34556555555555667777788887666553321110


Q ss_pred             hhhccccccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCC-------ceeeeeecccceeEEEEC
Q 012996          159 ESQRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALD  227 (451)
Q Consensus       159 ~~~~~~~~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~  227 (451)
                      .  .....++.   .+. ....|.++....+ ..+.+++.++..|.++...+...       .....+.....+..+...
T Consensus        82 r--~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~  158 (370)
T 3l6v_A           82 S--NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT  158 (370)
T ss_dssp             T--TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred             c--ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe
Confidence            0  01111111   122 2345555543321 12268999999999998875432       111222233444444444


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCC
Q 012996          228 PAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      .....++..+.+|.+..++...-
T Consensus       159 ~~~~~i~l~T~~G~~irf~~~~v  181 (370)
T 3l6v_A          159 DGDRDVLLFASNGKTVRFGESTV  181 (370)
T ss_dssp             CSCCEEEEEETTSEEEEEEGGGS
T ss_pred             CCCceEEEEeCCCeEEEEEcccc
Confidence            55567888889999888887653

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.74  E-value=7.8  Score=33.70  Aligned_cols=243  Identities=13%  Similarity=0.019  Sum_probs=126.8

Q ss_pred             cEEEEeccCCCEEEEEcCCCcc-------e--eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           93 TYIAGGGQSGDIYMWEVASGRL-------L--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        93 ~~l~~~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      ..+++.+.+|.|+--.+.+.+.       +  ..++ ..+.+..+........|+.-+..|.+.-...........  ..
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--~~   80 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR--TA   80 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS--SS
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc--cC
Confidence            4566778888888665432111       1  1122 234455554444555666667777765554432211100  01


Q ss_pred             ccccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCc-------eeeeeecccceeEEEECCCCCE
Q 012996          164 SHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-------LLRNIVFPSVIDAIALDPAEHV  232 (451)
Q Consensus       164 ~~~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~i~~~~~~~~~~~  232 (451)
                      ...++.   .+. ....|.++....+ .....++..+.+|.++.-.+....       ....+.....+..+........
T Consensus        81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~  159 (327)
T 3uc1_A           81 RGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDD  159 (327)
T ss_dssp             CCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCE
T ss_pred             CCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCE
Confidence            111211   122 2345555543332 123799999999999988765422       1122223444555555555677


Q ss_pred             EEEEeCCCcEEEEEcc--CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-------ce
Q 012996          233 FYAGSRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------NI  302 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-------~~  302 (451)
                      ++..+..|.+..+...  .-..............+.. ...|.++...+ +.+++..+..|.++.-.+...       +-
T Consensus       160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G  238 (327)
T 3uc1_A          160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI-DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG  238 (327)
T ss_dssp             EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred             EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC-CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc
Confidence            8888999999988887  3221111111111222322 34566666555 778999999999888765322       22


Q ss_pred             EEEeec--CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          303 VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       303 ~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +..++.  -.+.+-.+....+...++..+.+|.+.-+...
T Consensus       239 ~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          239 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             EESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             EEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence            222322  13445555444444556556666665544443

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=90.44  E-value=9.4  Score=34.15  Aligned_cols=212  Identities=17%  Similarity=0.124  Sum_probs=104.4

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeecc-ccCCeeEEEEccCCcEEEEeeCCCcEEE
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRI  148 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~v  148 (451)
                      ..+..++++....+.+.-..+|.|+.|-....-.+           ..+.. ....|..++..  ..+.+....||.|..
T Consensus       105 ~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~  182 (389)
T 3kci_A          105 VFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT  182 (389)
T ss_dssp             SCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred             CceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence            34556777666666666688999999975432111           11111 11245555554  445666678999999


Q ss_pred             eeCcchhhhhhhhccc-ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c----------eeeeee
Q 012996          149 WSLLTVFEECESQRAS-HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNIV  216 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----------~~~~~~  216 (451)
                      |-.............. ..+..........|..++.....  ...+.-..+|.|+.|-.... +          ....+.
T Consensus       183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~--~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~  260 (389)
T 3kci_A          183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD--AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID  260 (389)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS--CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred             eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC--cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence            9754321110000000 00111111122345555543322  45666678999999964321 1          111111


Q ss_pred             c--ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC---CCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc
Q 012996          217 F--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM  291 (451)
Q Consensus       217 ~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~  291 (451)
                      .  ...|..++.  .....++-..+|.|+.|-..........   ....+..........|..++.. ....++...||.
T Consensus       261 ~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G-~~h~~al~~~G~  337 (389)
T 3kci_A          261 SLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG-SLHCVCCTEDGE  337 (389)
T ss_dssp             GGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTCC
T ss_pred             ccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec-cCeEEEECCCCC
Confidence            1  123444444  2334445578999999976542211100   0001111111112345555543 445555678999


Q ss_pred             EEEEeCCC
Q 012996          292 VRVWDPIT  299 (451)
Q Consensus       292 i~iwd~~~  299 (451)
                      |..|-...
T Consensus       338 v~~wG~n~  345 (389)
T 3kci_A          338 VYTWGDND  345 (389)
T ss_dssp             EEEEECCT
T ss_pred             EEEeeCCC
Confidence            99997653

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=89.66  E-value=9.2  Score=32.89  Aligned_cols=210  Identities=10%  Similarity=0.057  Sum_probs=111.2

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCC---------Cccee---eeccccCCeeEEEEc---cCCcEEEEeeCCC
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLK---KWHAHYRAVTCLVFS---EDGSFLISGSEDG  144 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~---~~~~~~~~v~~~~~~---~~~~~l~s~~~dg  144 (451)
                      .+.+..+........|+..+..|.++-+....         |..+.   .+. ....|..+...   +++.+++..+.+|
T Consensus        41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G  119 (307)
T 1zi0_A           41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANG  119 (307)
T ss_dssp             -CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred             CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence            34555555444555666667778866665421         22111   122 33456555432   3566789999999


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---------ceeeee
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---------RLLRNI  215 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------~~~~~~  215 (451)
                      .++-..+.......    ........+..+ ..+..+......  ..++..+.+|.+..++...-         ...-.+
T Consensus       120 ~~Krt~l~e~~~~~----r~G~~~i~l~~~-d~lv~~~~~~~~--~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L  192 (307)
T 1zi0_A          120 TVKKTVLTEFNRLR----TAGKVAIKLVDG-DELIGVDLTSGE--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL  192 (307)
T ss_dssp             EEEEEEGGGGTTCC----TTCEESSCCCTT-CCEEEEEEECTT--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC
T ss_pred             eEEEEEHHHhhccc----cCCeEEEEECCC-CEEEEEEEeCCC--CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe
Confidence            99998875422111    111122223334 455555544433  56777888888888776421         111122


Q ss_pred             ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR  293 (451)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~  293 (451)
                      .....|.++...+++..+++.+..|..+-.++..-..... ..+.. ...+..-.+.+..+.... ...++..+.+|.+.
T Consensus       193 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~-~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i  271 (307)
T 1zi0_A          193 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI-SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV  271 (307)
T ss_dssp             CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE-SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred             CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE-eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence            2345666666555666788889999988887754321111 11111 112222234444444433 45555666677666


Q ss_pred             EEeCC
Q 012996          294 VWDPI  298 (451)
Q Consensus       294 iwd~~  298 (451)
                      -+++.
T Consensus       272 r~~~~  276 (307)
T 1zi0_A          272 RTRVS  276 (307)
T ss_dssp             EEEGG
T ss_pred             EEecc
Confidence            55544

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=89.62  E-value=9.3  Score=32.87  Aligned_cols=245  Identities=12%  Similarity=0.032  Sum_probs=124.4

Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCccee---------eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      |+..++++.+.+|.|+--.+.+.+...         .++.+ +.+..+........|+..+..|.+.-+.......... 
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~-   78 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR-   78 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS-
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC-
Confidence            455677888999999877664422111         12222 3444444444555677777888866665533211110 


Q ss_pred             hccccccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCC-------ceeeeeecccceeEEEECCC
Q 012996          161 QRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPA  229 (451)
Q Consensus       161 ~~~~~~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~  229 (451)
                       .....++.   .+. ....|.++....+ ..+.+++..+..|.++...+..-       .....+.....+..+.....
T Consensus        79 -~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~  156 (307)
T 1zi0_A           79 -GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG  156 (307)
T ss_dssp             -SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred             -CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence             01111111   122 2335555543221 12257889999999998876421       11112222344545444445


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-------c
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------N  301 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-------~  301 (451)
                      ...++..+.+|.+..++...-..............+. ....|.++...+ +..+++.+..|.++-.++...       +
T Consensus       157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k  235 (307)
T 1zi0_A          157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK  235 (307)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred             CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence            5678888899998888876533221111111112232 234566665444 667888899999888876321       1


Q ss_pred             eEE--EeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          302 IVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       302 ~~~--~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      -+.  .+....+.+-.+....+...+...+.+|.+.-...
T Consensus       236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~  275 (307)
T 1zi0_A          236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV  275 (307)
T ss_dssp             CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred             CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence            122  22222345555544444444555556666543343

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=89.14  E-value=10  Score=32.81  Aligned_cols=204  Identities=9%  Similarity=-0.018  Sum_probs=110.5

Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCc----ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |+..++++.+.+|.|+--.+...+    .-..++.. +.+..+........|+..+..|.+.-+..........  ....
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r--~a~G   79 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW--KDLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT--TSCC
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC--CCCC
Confidence            566778888999999877654221    11123322 3444444444556677778888866665533211110  0111


Q ss_pred             ccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCC------ceee--eeecccceeEEEECCCCCEE
Q 012996          166 LYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG------RLLR--NIVFPSVIDAIALDPAEHVF  233 (451)
Q Consensus       166 ~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~------~~~~--~~~~~~~i~~~~~~~~~~~l  233 (451)
                      .++.   .+. ....|.++....+ ..+.+++..+..|.++...+..-      .-+.  .+.....+..+........+
T Consensus        80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i  158 (323)
T 1wp5_A           80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL  158 (323)
T ss_dssp             EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred             cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence            1111   122 2234555433322 11267889999999999876421      1122  22233445554444556678


Q ss_pred             EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCC
Q 012996          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI  298 (451)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~  298 (451)
                      +..+.+|.+..++...-..............+.. ...|.++...+ +. .+++.+..|..+..++.
T Consensus       159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~  224 (323)
T 1wp5_A          159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLT  224 (323)
T ss_dssp             EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence            8889999999888865332211111111222322 34566665444 55 78888889888777654

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=88.68  E-value=12  Score=33.07  Aligned_cols=195  Identities=11%  Similarity=0.072  Sum_probs=108.2

Q ss_pred             eeccCcccCCCCCCccEEEEECCC---------CceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC------
Q 012996           47 LASSQLREQPSASSGSILYWSWSK---------PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS------  111 (451)
Q Consensus        47 ~~~~~~l~~~~~d~g~i~vw~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------  111 (451)
                      -|+..++++.+.+ |.|+--.+..         +.........+.+..+........|+..+..|.++-+....      
T Consensus         4 I~~e~~~v~lT~~-GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r   82 (370)
T 3l6v_A            4 IAPEDVVVTLSHA-GYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS   82 (370)
T ss_dssp             CCCCCEEEEEESS-CEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             ccCCCEEEEEeCC-CEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence            3555666666666 7777654321         22223344456666666666666676667788877665421      


Q ss_pred             ---Cccee---eeccccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          112 ---GRLLK---KWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       112 ---~~~~~---~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                         |..+.   .+. ....|.++....   ++.+|+.++..|.++...+.......    ........+.. ...+..+.
T Consensus        83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~----~~G~~ai~L~~-~d~lv~v~  156 (370)
T 3l6v_A           83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL----ARGKIAINLDE-GDALVGVA  156 (370)
T ss_dssp             TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC----TTCEESSCCCT-TCCEEEEE
T ss_pred             ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc----CCceEEEEeCC-CCEEEEEE
Confidence               21111   122 234565554332   45689999999999999885532210    11222223333 34455554


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCce-------ee--eeecccceeEEEECC-------------------------
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRL-------LR--NIVFPSVIDAIALDP-------------------------  228 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~--~~~~~~~i~~~~~~~-------------------------  228 (451)
                      .....  ..++..+..|.+..++...-..       +.  .+.....|.++...+                         
T Consensus       157 ~~~~~--~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~  234 (370)
T 3l6v_A          157 LTDGD--RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAE  234 (370)
T ss_dssp             EECSC--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------
T ss_pred             EeCCC--ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccc
Confidence            44433  5677788888888776532111       11  122334454444333                         


Q ss_pred             ----------CCCEEEEEeCCCcEEEEEccCC
Q 012996          229 ----------AEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       229 ----------~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                                .+..+++.+..|..+...+..-
T Consensus       235 ~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~  266 (370)
T 3l6v_A          235 PAVIDVADNGDVAYILTATENGYGKRTPLAEY  266 (370)
T ss_dssp             ------------CEEEEEETTSEEEEEEGGGS
T ss_pred             ccccccccccCCceEEEeeCCCCEEEEEHHHh
Confidence                      4467888899998888887653

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=88.15  E-value=21  Score=34.99  Aligned_cols=231  Identities=10%  Similarity=0.095  Sum_probs=112.2

Q ss_pred             eeEEE-ECCCCcEEEEe-ccC----CCEEEEEcCCCccee-eec-cccC------CeeEEEEccCCcEEEEe--------
Q 012996           83 IKPIA-ANSHGTYIAGG-GQS----GDIYMWEVASGRLLK-KWH-AHYR------AVTCLVFSEDGSFLISG--------  140 (451)
Q Consensus        83 v~~~~-~~~~~~~l~~~-~~d----g~i~iwd~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~~l~s~--------  140 (451)
                      ...+. ++|++++++.+ +..    ..++++|+.+++.+. .+. .-..      ....++|..++.++++.        
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            34445 78999988765 222    349999999987663 122 0000      11345787444444432        


Q ss_pred             --eCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce-eEEEEeecCCee---EEEEeeCC---CcEEEEEcCC--C
Q 012996          141 --SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSA---TIVSASED---RTCKVWSLLK--G  209 (451)
Q Consensus       141 --~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~---~l~s~~~d---~~i~iwd~~~--~  209 (451)
                        +....|+.|.+-+...       ....+  +.+....+ .+...+.++...   .+++.+.+   ..+.+.|...  +
T Consensus       211 ~~~~~~~v~~~~~Gt~~~-------~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  281 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIE-------KAKKL--FEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL  281 (711)
T ss_dssp             TTSSBCEEEEEETTSCGG-------GCEEE--EECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC
T ss_pred             cCCCCCEEEEEECCCChH-------HCeEE--eccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC
Confidence              1124588887754211       11112  22222222 223334444322   34443322   3456666543  3


Q ss_pred             ceeeeeecccceeEEEECCCCCEEEEE----------eCCCcEEEEEccCCCCCC-CCCCceeeeeeccCCcceeEEEEe
Q 012996          210 RLLRNIVFPSVIDAIALDPAEHVFYAG----------SRDGSIYIAALNAESPST-SSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                      + ...+..+.... +..+..+.+++..          ...+.|...++....... ....++.+. .......+..+.|.
T Consensus       282 ~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  358 (711)
T 4hvt_A          282 K-LQKINMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT  358 (711)
T ss_dssp             E-EEECCSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC
T ss_pred             c-ceEeecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE
Confidence            2 22333222221 2233455444432          246678889987642100 000112111 12234567788888


Q ss_pred             cCCEEEEEcCCCc--EEEEeCCCCc-eEEE-eecC-CCCeeEEEEEecCcee
Q 012996          279 TGDLLISGSEDGM--VRVWDPITHN-IVRM-FRLA-KGPVNNILVVRRPLYL  325 (451)
Q Consensus       279 ~~~~l~s~~~dg~--i~iwd~~~~~-~~~~-~~~~-~~~v~~l~~s~~~~~l  325 (451)
                      .+.++++...++.  |.++|+.++. .... +... .+.+....+++++..+
T Consensus       359 ~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~  410 (711)
T 4hvt_A          359 KDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEA  410 (711)
T ss_dssp             SSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCE
T ss_pred             CCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEE
Confidence            7777777777775  6777876664 2333 3322 3456666666766544

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=87.70  E-value=13  Score=32.20  Aligned_cols=212  Identities=9%  Similarity=0.071  Sum_probs=108.2

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCC---------Ccceee---eccccCCeeEEEEcc---CCcEEEEeeCCC
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLKK---WHAHYRAVTCLVFSE---DGSFLISGSEDG  144 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~---~~~~~~~v~~~~~~~---~~~~l~s~~~dg  144 (451)
                      .+.+..+........|+..+..|.++-+....         |.++..   +. ....|..+...+   ++.+++.++.+|
T Consensus        38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G  116 (323)
T 1wp5_A           38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNG  116 (323)
T ss_dssp             TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred             CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCC
Confidence            45555555555556666667788876665421         221111   22 233455543333   256789999999


Q ss_pred             cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-------ceeeee--
Q 012996          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNI--  215 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~--  215 (451)
                      .++...+........   ........+... ..+..+......  ..++..+.+|.+..+....-       +-+.-+  
T Consensus       117 ~iKrt~l~e~~~~~r---~~G~~ai~l~e~-d~lv~~~~~~~~--~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L  190 (323)
T 1wp5_A          117 MVKKTELKHYKAQRY---SKPLTGINLKND-DQVVDVHLTDGM--NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL  190 (323)
T ss_dssp             EEEEEEGGGGCCSCC---SSCEECSCCCTT-CCEEEEEEECSC--SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC
T ss_pred             eEEEeEHHHhhhccc---cCceEEEEeCCC-CEEEEEEEeCCC--CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe
Confidence            999998854321110   111112223322 455555444433  56778888998888876421       112222  


Q ss_pred             ecccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEE-EEecCCEEEEEcCCCcE
Q 012996          216 VFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCL-AYSTGDLLISGSEDGMV  292 (451)
Q Consensus       216 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~dg~i  292 (451)
                      .....|.++...+.+. .+++.+..|..+..++..-..... ..+...+..+......+..+ .+.++..++..+.+|.+
T Consensus       191 ~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~  270 (323)
T 1wp5_A          191 KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFI  270 (323)
T ss_dssp             CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCE
T ss_pred             CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeE
Confidence            2334455554434444 788888899888887765221111 11112222222222234432 33334555556666665


Q ss_pred             EEEeCC
Q 012996          293 RVWDPI  298 (451)
Q Consensus       293 ~iwd~~  298 (451)
                      .-..+.
T Consensus       271 ir~~~~  276 (323)
T 1wp5_A          271 ETIKVG  276 (323)
T ss_dssp             EEEEGG
T ss_pred             EEEEhh
Confidence            555443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.50  E-value=31  Score=35.20  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  307 (451)
                      .+.+++..+ ..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            456677776 7799999999999999999999988764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.15  E-value=11  Score=34.72  Aligned_cols=111  Identities=9%  Similarity=-0.015  Sum_probs=61.1

Q ss_pred             cceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeee-eec-----cCCcceeEEEEecC----CEEEEE-
Q 012996          219 SVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLS-----DHSKAVTCLAYSTG----DLLISG-  286 (451)
Q Consensus       219 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-----~~~~~v~~~~~~~~----~~l~s~-  286 (451)
                      .....|+|.|++. .|+++...|.|++++..........   .-+. .+.     ........|+++|.    .+|... 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~---~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPY---LDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCS---EECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeee---cCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence            3567899999996 5666778899999975432100000   0010 011     12456788999982    333332 


Q ss_pred             cC--C----------CcEEEEeCCC----------CceEEEee--cCCCCeeEEEEEecCceeeeccCCC
Q 012996          287 SE--D----------GMVRVWDPIT----------HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSN  332 (451)
Q Consensus       287 ~~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~  332 (451)
                      +.  +          ..|.-|.+..          .+.+..+.  .....-..|+|.|||.+.++.+..+
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            21  1          1344455432          22333332  1123568999999997777665544

>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}

Probab=85.41  E-value=2.2  Score=21.02  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996          407 RLKRECNRTLQMVQQWKKMYENLHEF  432 (451)
Q Consensus       407 ~l~~~~~~~~~~~~~~~~~~~~l~~~  432 (451)
                      +|+++++++....++++++.+.+.+.
T Consensus         3 rlee~~r~l~~ivq~lq~r~drle~t   28 (32)
T 2akf_A            3 RLEEDVRNLNAIVQKLQERLDRLEET   28 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888888888888888887765

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=84.76  E-value=17  Score=30.66  Aligned_cols=205  Identities=13%  Similarity=0.059  Sum_probs=116.0

Q ss_pred             CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~  202 (451)
                      +.+..+.......+|+.-+.+|.++--.+......      ....+  +. ....|..+.. .+-....++..+.+|.++
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~------~~~~l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iK   93 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG------SKVSL--KS-REEKIVGAFI-REKFGNRLLLATKKGYVK   93 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS------EECCC--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEE
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC------ccccc--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEE
Confidence            45555554444556667777888776555432110      01112  32 3455666543 310226899999999999


Q ss_pred             EEEcCCCc------eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEE
Q 012996          203 VWSLLKGR------LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCL  275 (451)
Q Consensus       203 iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~  275 (451)
                      ...+..-.      ....+.....+..+........++..+..|.++.++...-..... ..+.. ...+.. ...|.++
T Consensus        94 r~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~-~i~L~~-~d~vv~~  171 (276)
T 3no0_A           94 KIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ-GIKLEK-NDETSGL  171 (276)
T ss_dssp             EEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-CCCCCT-TCCEEEE
T ss_pred             EEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-EEccCC-CCEEEEE
Confidence            98865422      122233345566666666677888899999999888765332211 11212 223333 3456665


Q ss_pred             EEec-CCEEEEEcCCCcEEEEeCCC-------CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc--cccC
Q 012996          276 AYST-GDLLISGSEDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS--SRRH  340 (451)
Q Consensus       276 ~~~~-~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i--w~~~  340 (451)
                      ...+ +..++..+..|.++...+..       ++-+..+ ...+.+..+....+...++..+.+|.+..  ++..
T Consensus       172 ~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          172 RIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            5555 77889999999988887542       2223333 22345555544444445666666777655  5543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=84.60  E-value=17  Score=34.53  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=42.2

Q ss_pred             ceeEEEEec-CCEEEEEcCC------------CcEEEEeCCCCceEEEeecCC-CCeeEEEEEecCceeeec
Q 012996          271 AVTCLAYST-GDLLISGSED------------GMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~  328 (451)
                      ..-.|+|+| |+++++-..+            ..+.+.+..+++..+-+..+. ..++.++|+||++.|...
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            346699999 8877765432            246666777787766666553 589999999999988765

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=84.29  E-value=22  Score=31.67  Aligned_cols=248  Identities=12%  Similarity=0.085  Sum_probs=122.8

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeecc-ccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      .|..++..  ....+.-..||.|+.|-....-.+           ..+.. ....+..++++....+.+.-..||.|..|
T Consensus        54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w  131 (389)
T 3kci_A           54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW  131 (389)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred             ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence            34455443  344444567899999975432111           11111 12234556676666677777889999999


Q ss_pred             eCcchhhhhhhhcc---cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c----------eeeee
Q 012996          150 SLLTVFEECESQRA---SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNI  215 (451)
Q Consensus       150 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----------~~~~~  215 (451)
                      -.............   ....+..+  ....|..++..  .  ...+....+|.|+.|-.... +          ....+
T Consensus       132 G~n~~GqLG~g~~~~~~~p~~v~~l--~~~~i~~va~G--~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v  205 (389)
T 3kci_A          132 GEAEDGKLGHGNRSPCDRPRVIESL--RGIEVVDVAAG--G--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV  205 (389)
T ss_dssp             ECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEEC--S--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred             eCCCCCcCCCCCCccCcCCeEeccc--CCCeEEEEEeC--c--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEe
Confidence            65432111000000   01111111  12245555543  2  45666678999999975321 1          01111


Q ss_pred             e--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC--CCceeeeeecc-CCcceeEEEEecCCEEEEEcCCC
Q 012996          216 V--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS--YGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDG  290 (451)
Q Consensus       216 ~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg  290 (451)
                      .  ....+..++........++-..+|.|+.|-..........  ........+.. ....|..++.. ..+.++-..||
T Consensus       206 ~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G-~~hs~alt~~G  284 (389)
T 3kci_A          206 EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG-SQFSVALTKSG  284 (389)
T ss_dssp             GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE-TTEEEEEETTS
T ss_pred             cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC-CCEEEEEeCCC
Confidence            1  1234666666554456666788999999976542211100  00001111111 12245555544 45555567899


Q ss_pred             cEEEEeCCCCc-----------eEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          291 MVRVWDPITHN-----------IVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       291 ~i~iwd~~~~~-----------~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      .|..|-....-           ....+.. ....|..++...  .+.+....||.+..|-..
T Consensus       285 ~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n  344 (389)
T 3kci_A          285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN  344 (389)
T ss_dssp             CEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred             eEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence            99999654211           1111221 122455554433  334444678888888754

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=80.43  E-value=4.6  Score=21.12  Aligned_cols=30  Identities=27%  Similarity=0.292  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996          402 EMEVERLKRECNRTLQMVQQWKKMYENLHE  431 (451)
Q Consensus       402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  431 (451)
                      ..+.++|.++++...+....+++.+++|.+
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            356677888888888888888888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	451
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-19
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 59/302 (19%), Positives = 114/302 (37%), Gaps = 24/302 (7%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
           ++ S+S  D  I  WD E+G  +   K        ++      L +S   +         
Sbjct: 31  VMVSAS-EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
            +           ++ +  I P     +G +I    +   I MWEV +G  +K +  H  
Sbjct: 90  GFECIRTMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 144

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH-------SFTGHTL 176
            V  +  ++DG+ + S S D  VR+W + T   + E +   H+          S++  + 
Sbjct: 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 204

Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA 235
                    G     ++S S D+T K+W +  G  L  +V   + +  +          +
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 264

Query: 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRV 294
            + D ++ +                 + +L+ H   VT L +  T   +++GS D  V+V
Sbjct: 265 CADDKTLRVWDYK---------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 295 WD 296
           W+
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 1e-12
 Identities = 41/226 (18%), Positives = 73/226 (32%), Gaps = 22/226 (9%)

Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179
            H   VT ++F    S ++S SED  +++W              +  +  +  GHT  + 
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDY-----------ETGDFERTLKGHTDSVQ 63

Query: 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD 239
           DI   + G      SA        +   +     +    +V       P      + SRD
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-MPNGDHIVSASRD 122

Query: 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPI 298
            +I +  +            + + + + H + V  +  +  G L+ S S D  VRVW   
Sbjct: 123 KTIKMWEVQ---------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

Query: 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344
           T       R  +  V  I       Y ++   +   T         
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 219

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 28/277 (10%)

Query: 68  WSKPQVEVKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV 125
           W     E  +L     P+  +  +   + +    +   I +W+  +G   +    H  +V
Sbjct: 3   WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185
             + F   G  L S S D  +++W               H                    
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN---------- 112

Query: 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-VIDAIALDPAEHVFYAGSRDGSIYI 244
                 IVSAS D+T K+W +  G  ++        +  +  +    +  + S D ++ +
Sbjct: 113 ---GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 245 AALNAESP------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMV 292
             +  +                S        S+S+ + + T  +   G  L+SGS D  +
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329
           ++WD  T   +         V  +L      ++   +
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.0 bits (216), Expect = 1e-19
 Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 33/242 (13%)

Query: 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163
           +++    +G+      AH   +  +       F +S S DG +++W    +  E    ++
Sbjct: 2   VFIATANAGK------AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKS 53

Query: 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-----------LL 212
              ++H    H + +   +         + + S       + + +             LL
Sbjct: 54  YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

Query: 213 RNIVFPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHI------ 261
            + +      A+    +      H   A    G+ YI   +  +  ++S  ++       
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173

Query: 262 ---IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318
              + S    S+  T +  S   L+ +G  +G V++ +  T   +  F      +NN   
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233

Query: 319 VR 320
           +R
Sbjct: 234 IR 235

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 7e-08
 Identities = 39/263 (14%), Positives = 71/263 (26%), Gaps = 40/263 (15%)

Query: 89  NSHGTYIAGGGQSGDIYMWEVASGRLLKKW----------HAHYRAVTCLVFSEDG---- 134
                 +A    SGD+  + +      KK                +   L +        
Sbjct: 76  AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 135

Query: 135 -SFLISGSEDGCVRIWSLLTVFEECESQRASHLY-------LHSFTGHTLRITDIVIGYG 186
              L++    G   IW      +E  S   +          + S    +   T + I   
Sbjct: 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 195

Query: 187 GVSATIVSASEDRTCKVWS-------LLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD 239
           G    I +   + T ++                  I   + I ++   P   +       
Sbjct: 196 G---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 240 GSIYIAAL-------NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGM 291
            S     L          S S  ++          HS  V  L+++ +G+ L S   DG 
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 312

Query: 292 VRVWDPITHNIVRMFRLAKGPVN 314
           +R WD  T   +    +    + 
Sbjct: 313 LRFWDVKTKERITTLNMHCDDIE 335

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 66  WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH---- 121
            + S      +   +  +  ++ N  G  +   G  G +  W+V +   +   + H    
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
                 L   E G  L        V+   
Sbjct: 335 EIEEDILAVDEHGDSLAEPGVF-DVKFLK 362

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 4e-18
 Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 62/216 (28%)

Query: 82  PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141
            +  ++          G       +W+V  G   + +  H   +  + F  +G+   +GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
           +D   R++         + +    L  +S       IT +     G    +++  +D  C
Sbjct: 246 DDATCRLF---------DLRADQELMTYSHDNIICGITSVSFSKSG--RLLLAGYDDFNC 294

Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
            VW  LK                                                     
Sbjct: 295 NVWDALKADRAG------------------------------------------------ 306

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
              L+ H   V+CL  +  G  + +GS D  +++W+
Sbjct: 307 --VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.9 bits (203), Expect = 4e-18
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 7/145 (4%)

Query: 8   SSVADTGIGCWDLESGAEQLRYKSCASPPHGLACV--GQRFLASSQLREQPSASSGSILY 65
           S   D     WD+  G  +  +    S  + +     G  F   S       A+      
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-----DATCRLFDL 255

Query: 66  WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV 125
            +  +            I  ++ +  G  +  G    +  +W+            H   V
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315

Query: 126 TCLVFSEDGSFLISGSEDGCVRIWS 150
           +CL  ++DG  + +GS D  ++IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 8e-17
 Identities = 40/269 (14%), Positives = 85/269 (31%), Gaps = 41/269 (15%)

Query: 82  PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141
            I  +   +    +    Q G + +W+  +   +         V    ++  G+++  G 
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 142 EDGCVRIWSLLTVFEECESQRAS--------------------------------HLYLH 169
            D    I++L T        R                                       
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176

Query: 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP 228
           + T        + +     +   VS + D + K+W + +G   +      S I+AI   P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGS 287
             + F  GS D +  +           +    +  S  +    +T +++S +G LL++G 
Sbjct: 237 NGNAFATGSDDATCRL-------FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 288 EDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           +D    VWD +  +   +       V+ +
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCL 318

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 22/219 (10%), Positives = 58/219 (26%), Gaps = 25/219 (11%)

Query: 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-------------VFEECE 159
           R  +    H   +  + +  D   L+S S+DG + IW   T             V     
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219
           +   +++                       +  ++           L   +++ +    +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-----------GSLSDH 268
                     +   + G     + ++         S                   + + H
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 269 SKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
              +  + +   G+   +GS+D   R++D      +  +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 8e-06
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNI 302
           ++ +           M    +L  H   +  + +     LL+S S+DG + +WD  T N 
Sbjct: 30  LSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK 89

Query: 303 VRMFRLAKGPVNNI 316
           V    L    V   
Sbjct: 90  VHAIPLRSSWVMTC 103

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.6 bits (197), Expect = 4e-17
 Identities = 53/326 (16%), Positives = 106/326 (32%), Gaps = 50/326 (15%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRY-------------KSCASPPHGLACVGQRFLASS 50
            +A+    +     + +  G+   R               + +SP   L      F    
Sbjct: 76  YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133

Query: 51  QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110
           +     +      ++   ++  V +     + I  +     G  +  G     + +W++ 
Sbjct: 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 193

Query: 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170
           +G+            T  V   DG ++ +GS D  VR+W      E             S
Sbjct: 194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS----ETGFLVERLDSENES 249

Query: 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP------------ 218
            TGH   +  +V    G   ++VS S DR+ K+W+L       +   P            
Sbjct: 250 GTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 219 -SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277
              + ++A    +    +GS+D  +      + +P         +  L  H  +V  +A 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---------LLMLQGHRNSVISVAV 358

Query: 278 S-------TGDLLISGSEDGMVRVWD 296
           +         ++  +GS D   R+W 
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 6e-15
 Identities = 58/343 (16%), Positives = 115/343 (33%), Gaps = 69/343 (20%)

Query: 46  FLASSQLREQPSA----SSGSILYWSWSKPQVEVKSLPA-----EPIKPIAANSHGTYIA 96
           FL     +  P A    ++   + ++ + P+     L         +  +  ++ G Y+A
Sbjct: 19  FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLA 78

Query: 97  GGGQSGDIYMWEVASGRLLKKW------------------HAHYRAVTCLVFSEDGSFLI 138
            G  +    ++ V+ G L+ +                    +    +  + FS DG FL 
Sbjct: 79  TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 139 SGSED------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186
           +G+ED              + +          +   +    +      T+RI D+  G  
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 187 -----------------GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV--------I 221
                            G    I + S DR  +VW    G L+  +   +         +
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 222 DAIALDPAEHVFYAGSRDGSIYIAAL---NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278
            ++          +GS D S+ +  L   N +S S +        +   H   V  +A +
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320
              + ++SGS+D  V  WD  + N + M +  +  V ++ V  
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 7e-13
 Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 27/157 (17%)

Query: 66  WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-- 123
                 + E  +   + +  +     G  +  G     + +W + +              
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 124 ----------AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173
                      V  +  +++  +++SGS+D  V  W   +              L    G
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS--GNP---------LLMLQG 348

Query: 174 HTLRITDIVIGYGGV----SATIVSASEDRTCKVWSL 206
           H   +  + +  G           + S D   ++W  
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 5   IASSSVADTGIGCWDLESGAEQLRYKSCASPPHG---------LACVGQRFLASS----- 50
           IA+ S  D  +  WD E+G    R  S      G             GQ  ++ S     
Sbjct: 220 IAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 51  QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110
           +L    +A++ S      S           + +  +A   +  YI  G +   +  W+  
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 111 SGRLLKKWHAHYRAVTCLV------FSEDGSFLISGSEDGCVRIWSL 151
           SG  L     H  +V  +          + +   +GS D   RIW  
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 63/285 (22%)

Query: 80  AEPIKPIAANSHGTYIA---GGGQSGDIYMWEVASGRL----LKKWHAHYRAVTCLVFSE 132
           ++PI P   +     +        +    ++  A  R     L K   H   V C+ FS 
Sbjct: 13  SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72

Query: 133 DGSFLISGSEDGCVRIWSLLTV-------FEECESQRASHLYLHSFTGHTLRITDIVIGY 185
           DG +L +G  +   +++ +           +   ++   +L   S     L I  +    
Sbjct: 73  DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------------------- 218
            G    + + +EDR  ++W +   +++  +                              
Sbjct: 132 DG--KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 219 ----------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262
                            V              AGS D ++ +   ++E+           
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW--DSETGFLVERLDSEN 247

Query: 263 GSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
            S + H  +V  + ++  G  ++SGS D  V++W+    N     
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.0 bits (172), Expect = 5e-14
 Identities = 39/265 (14%), Positives = 79/265 (29%), Gaps = 18/265 (6%)

Query: 77  SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDG 134
           S   EPI   A N   T IA    + +++++E +  +   + +   H   VT + ++ D 
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194
           + +++   D    +W+L     +                         +G G    +I  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST 254
             ++    V               S + ++   P   +  AGS D    I +   +    
Sbjct: 124 FEQENDWWVCK------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177

Query: 255 SSYG---------MHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVR 304
                          ++   S     V  + +S  G  +   S D  V + D      V 
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 237

Query: 305 MFRLAKGPVNNILVVRRPLYLNLGS 329
                  P+  +  +     +  G 
Sbjct: 238 TLASETLPLLAVTFITESSLVAAGH 262

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 14/174 (8%), Positives = 47/174 (27%), Gaps = 33/174 (18%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
                   +   S     +  +  +++G+ +A       + + +      +    +    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245

Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC----------ESQRASHLYLHSF--- 171
           +  + F  + S + +G  D    +++  +   +           +S +        F   
Sbjct: 246 LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 172 -----------------TGHTLRITDIVI--GYGGVSATIVSASEDRTCKVWSL 206
                            + H   ++ I +  G     +   +   D    +W +
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 13/141 (9%), Positives = 37/141 (26%), Gaps = 11/141 (7%)

Query: 15  IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE 74
           +   D +         S   P   +  + +  L ++             + +++     +
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAA-------GHDCFPVLFTYDSAAGK 277

Query: 75  VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG 134
           +       +   ++    T              E ++         H  +V+ +     G
Sbjct: 278 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG 337

Query: 135 SF----LISGSEDGCVRIWSL 151
                   +   DG + IW +
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 28/197 (14%)

Query: 105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRAS 164
           +  ++  G L+ +  +    V  + FS +GS +   S D  V +        + +   A+
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA-----DKKMAVAT 238

Query: 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI 224
                        IT+         +++V+A  D    +++         + F   +D  
Sbjct: 239 LASETLPLLAVTFITE---------SSLVAAGHDCFPVLFTYDSAA--GKLSFGGRLDV- 286

Query: 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--- 281
              P +      +           A S  +++ G    G  S H  +V+ ++  +G    
Sbjct: 287 ---PKQSSQRGLTARERFQNLDKKASSEGSAAAG---AGLDSLHKNSVSQISVLSGGKAK 340

Query: 282 --LLISGSEDGMVRVWD 296
                +   DG + +WD
Sbjct: 341 CSQFCTTGMDGGMSIWD 357

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 3e-13
 Identities = 48/294 (16%), Positives = 97/294 (32%), Gaps = 28/294 (9%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            I S    D  I  WD  +   +          H  + +  ++     +         S 
Sbjct: 27  KIVSGL-RDNTIKIWDKNTLECKRILTG-----HTGSVLCLQYDERVIITGSSD----ST 76

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
           +          + +L       +    +   +    +   I +W++AS   +        
Sbjct: 77  VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 136

Query: 124 -AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182
                 V   D  +++S S D  +++W+            ++  ++ +  GH   I  + 
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNT-----------STCEFVRTLNGHKRGIACLQ 185

Query: 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 242
                    +VS S D T ++W +  G  LR +     +             +G+ DG I
Sbjct: 186 YR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-RFDNKRIVSGAYDGKI 240

Query: 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
            +  L A     +  G   + +L +HS  V  L +     ++S S D  + +WD
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 8e-09
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314
           + +  I   S+ SK V CL Y     ++SG  D  +++WD  T    R+     G V 
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 37/240 (15%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED--------GSFLISGSE 142
               I  G +   I +W+  +    +    H  +V CL + E          +  +    
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD------------------IVIG 184
            G +    +         +  + + +      ++ + D                   V  
Sbjct: 84  TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143

Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI 244
                  IVSAS DRT KVW+      +R +          L   + +  +GS D +I +
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIACLQYRDRLVVSGSSDNTIRL 202

Query: 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR 304
             +   +      G   +                    ++SG+ DG ++VWD +     R
Sbjct: 203 WDIECGACLRVLEGHEEL----------VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 252

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 35/220 (15%)

Query: 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT------------------- 153
           + +       + V CL +  D   ++SG  D  ++IW   T                   
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 154 ------VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207
                       + R   +         +   + V+     +  +V+ S+DR+  VW + 
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267
               +          A          Y  S  G   I   N  +          + +L+ 
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-------FVRTLNG 176

Query: 268 HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           H + + CL Y    L++SGS D  +R+WD      +R+  
Sbjct: 177 HKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLE 215

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 4e-13
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 21/191 (10%)

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           A    +  W        + +L     +  +    G ++  G     I +W+V +G  +  
Sbjct: 154 AYDFMVKVWDPETETC-LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
              H    + +   ++   L+SG+ D  V+IW +                         +
Sbjct: 213 LTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI------------KTGQCLQTLQGPNK 258

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP------SVIDAIALDPAEH 231
               V         ++++S+D T K+W L  G  +RN+V         V+  I     + 
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318

Query: 232 VFYAGSRDGSI 242
           V   GSR+G+ 
Sbjct: 319 VCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 9e-12
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 28/213 (13%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
            G  +  G     + +W+  +   L     H   V  L F  DG  ++SGS D  +R+W 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 203

Query: 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210
           +            +   +H+ TGH    + + +        +VS + D T K+W +  G+
Sbjct: 204 V-----------ETGNCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKTGQ 248

Query: 211 LLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268
            L+ +            L   ++     S DG++ +  L       +   +   G     
Sbjct: 249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG----S 304

Query: 269 SKAVTCLAYS-TGDLLISGSEDG----MVRVWD 296
              V  +  S T  +   GS +G     + V D
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 35/244 (14%), Positives = 67/244 (27%), Gaps = 34/244 (13%)

Query: 87  AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV 146
                G  I  G     + +W   +G+ L+    H   V      ++     S      V
Sbjct: 22  CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 81

Query: 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLR-----------------------ITDIVI 183
                           ++   +H      +                            V 
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141

Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243
                   +VS + D   KVW       L  +   +               +GS D SI 
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSGSLDTSIR 200

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303
           +  +            + I +L+ H    + +     ++L+SG+ D  V++WD  T   +
Sbjct: 201 VWDVE---------TGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCL 250

Query: 304 RMFR 307
           +  +
Sbjct: 251 QTLQ 254

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 50/315 (15%), Positives = 105/315 (33%), Gaps = 35/315 (11%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            I S S  D  +  W   +G                       ++ S  R     ++ + 
Sbjct: 29  RIVSGS-DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 87

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
                                    + H   +  G +   + +W++ +G+ L     H  
Sbjct: 88  ECIHTLYGHTSTVRCM---------HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 138

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
           AV C     DG  ++SG+ D  V++W              +   LH+  GHT R+  +  
Sbjct: 139 AVRC--VQYDGRRVVSGAYDFMVKVWDP-----------ETETCLHTLQGHTNRVYSLQF 185

Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243
                   +VS S D + +VW +  G  +  +     +    ++  +++  +G+ D ++ 
Sbjct: 186 D----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-TSGMELKDNILVSGNADSTVK 240

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303
           I           +          +  ++         + +I+ S+DG V++WD  T   +
Sbjct: 241 I-------WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293

Query: 304 RMFRLAKGPVNNILV 318
           R     +   +  +V
Sbjct: 294 RNLVTLESGGSGGVV 308

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 3e-10
 Identities = 41/235 (17%), Positives = 73/235 (31%), Gaps = 37/235 (15%)

Query: 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT------------- 153
           W     +  K    H   V        G+ ++SGS+D  +++WS +T             
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 154 ------------VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
                             + +  +             T  V         +VS S D T 
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           +VW +  G+ L  ++               V   G+ D  + +                 
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS-GAYDFMVKVWDPE---------TETC 169

Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           + +L  H+  V  L +  G  ++SGS D  +RVWD  T N +      +   + +
Sbjct: 170 LHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 8e-09
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            + S S  DT I  WD+E+G          S   G+       ++ +        +  ++
Sbjct: 189 HVVSGS-LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN--------ADSTV 239

Query: 64  LYWS--WSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW--- 118
             W     +    ++              +  ++      G + +W++ +G  ++     
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299

Query: 119 --HAHYRAVTCLVFSEDGSFLISGSEDGC----VRIWSL 151
                   V  +  S        GS +G     + +   
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 6e-12
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 86  IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
           +     G +    G+   +  W    G  + +      +V     S D  ++++GS D  
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 146 VRIWSLL 152
             ++ ++
Sbjct: 330 ATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
            ++  W   + +   +      I  +     G ++A G +S ++ +  V       + H 
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHL 263

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H   V  L F+  G + +S  +D  +  W           Q          +  +  +  
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQ----------SKESSSVLS 311

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLL 207
             I        IV+ S D+   V+ ++
Sbjct: 312 CDISVDD--KYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 43/310 (13%), Positives = 85/310 (27%), Gaps = 51/310 (16%)

Query: 46  FLASSQLREQPSASSGSILYWSWSKPQV-EVKSLP-AEPIKPIAANSHGTYIAGGGQSGD 103
           F  ++  + QP       L          ++ +L   E +  +  ++   ++  GG+ G 
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GC 73

Query: 104 IYMWEVASGRLLKK-----WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL------- 151
           + +W+++                   +       DG  LI G E   + IW L       
Sbjct: 74  VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133

Query: 152 ------------------------LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187
                                       +   +    H                 I    
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193

Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247
               + +   D T + W L +GR L+   F S I ++   P       G    ++ +  +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253

Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
           N                L  H   V  L ++  G   +S  +D ++  W       +   
Sbjct: 254 N----------KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303

Query: 307 RLAKGPVNNI 316
           +     V + 
Sbjct: 304 K-ESSSVLSC 312

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 37/296 (12%), Positives = 85/296 (28%), Gaps = 29/296 (9%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            + +       +  WD+     +                  + L           +S   
Sbjct: 65  HVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122

Query: 64  --LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
                + +       +  A     +A +            G+I +W++ +  L++++  H
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181
               +C+  S DG+ L +G  D  VR W L    +  +    S ++   +          
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT------- 235

Query: 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241
                     +    E    +V  + K    +  +  S + ++        F +  +D  
Sbjct: 236 -------GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           +        +    S            S +V     S     +++GS D    V++
Sbjct: 289 LNAWRTPYGASIFQS----------KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 9/105 (8%)

Query: 80  AEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI 138
           ++P       + G            I        R +   + H   V  +  S     + 
Sbjct: 9   SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVY 67

Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
           +G   GCV++W +            S +           I    +
Sbjct: 68  TGG-KGCVKVWDISH------PGNKSPVSQLDCLNRDNYIRSCKL 105

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 267 DHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLA-----KGPVNNILVVR 320
           +H + V  +  S     + +G   G V+VWD                     + +  ++ 
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 321 RPLYLNLGSFSNPHTSSRRH 340
               L +G  ++  +     
Sbjct: 108 DGCTLIVGGEASTLSIWDLA 127

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 34/337 (10%), Positives = 82/337 (24%), Gaps = 37/337 (10%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYK-SCASPPHGLACV--GQRFLASSQLREQPSASS 60
            +  ++  +  +   D+ S              P         +     +          
Sbjct: 10  YMIVTNYPNN-LHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 68

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA------------GGGQSGDIYMWE 108
                 ++      V       +   A +  G  +                +   + ++ 
Sbjct: 69  LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS 128

Query: 109 VASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT---------VFEE 157
            A G   K  +     R V  +  ++DGS  ++G +   + + +              + 
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF 217
             +    + + H    H   +   +  +        +A          L  G+       
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248

Query: 218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277
                       E  F                   +        +   ++      C+A+
Sbjct: 249 DL---------TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299

Query: 278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV 313
              GD L  G     + V++P T   V+  +L  G +
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.9 bits (138), Expect = 8e-10
 Identities = 41/345 (11%), Positives = 80/345 (23%), Gaps = 49/345 (14%)

Query: 2   ELLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACV--GQRFLASSQLREQPS 57
           + ++A +      +   D E  A  + +        P        G+   A+        
Sbjct: 2   DYILAPAR--PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV------- 52

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKP------IAANSHGTYIAGGGQSGDIYMWEVAS 111
             S S++       +   +   + P +        A +  G  +A       + +     
Sbjct: 53  NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112

Query: 112 G-----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160
                          +K     R +T L ++ DGS L     D  V      T+ E+   
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

Query: 161 QRASHLYLHSFTGHTLRITDIVIGYGGV--------SATIVSASEDRTCKVWSLLKGRLL 212
           Q              +       G                   +         L  G + 
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232

Query: 213 RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272
              V    +   +         A      +    L              I  +     + 
Sbjct: 233 MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE---------KNASIKRV-PLPHSY 282

Query: 273 TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
             +  ST G  +  G   G +  +D  T        L      ++
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 9e-10
 Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 52/286 (18%)

Query: 73  VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKWHAHYRAVTCLV 129
           V+++  P + I  I      + +      G + +++         L +   +   + C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 130 FSEDGSFLIS-GSEDGCVRIWSLLTVFE-------------------------------- 156
           F ++    I  G+  G +    L+                                    
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 157 ----ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 212
               +  +     + + +   +  ++ + +      S+ ++    +   + + L      
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 213 R-----NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS------YGMHI 261
                 + +   + D   L   +  +   S DG + +   + +    +S          +
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
               ++ +  V  + +S     L +   DG++  W+  T   ++ F
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 18/192 (9%), Positives = 49/192 (25%), Gaps = 9/192 (4%)

Query: 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT 172
           ++++   A    ++ +      S L+  S DG + ++            +A ++ L    
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF--------DIQAKNVDLLQSL 53

Query: 173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV 232
            +   +             I   +         L+     + +        I        
Sbjct: 54  RYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD 112

Query: 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMV 292
               +      I  ++  +       +  + S +   K       +    LI G  +  V
Sbjct: 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172

Query: 293 RVWDPITHNIVR 304
           + +         
Sbjct: 173 QWFRLPLCEDDN 184

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 17/180 (9%), Positives = 55/180 (30%), Gaps = 10/180 (5%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY----RAVTCLVFSEDGSFLISGSEDGCV 146
           + + +  G  +  +  + +                 +     +  ++       S DG V
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218

Query: 147 RIWSLLTVFEECESQRASHLY----LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
            +       ++  S +             T     +  I   +      + +A  D    
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE--FSPRHKFLYTAGSDGIIS 276

Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262
            W+L   + ++N    +    + +  ++++    + D +    A   ++   ++  ++II
Sbjct: 277 CWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 35/312 (11%), Positives = 71/312 (22%), Gaps = 23/312 (7%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACV------GQRFLASSQLREQPS 57
           L+  +S  D  +  +  +  A+ +         H L C         +    +   E   
Sbjct: 25  LLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                   +           +              ++             +         
Sbjct: 84  VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
            +             + S LI G  +  V+ + L    ++  +   S L         L 
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP-------SVIDAIALDPAE 230
                     +   +     D     ++  K    R              +++I   P  
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263

Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290
              Y    DG I    L             I      +  +V  +A S  ++L   + D 
Sbjct: 264 KFLYTAGSDGIISCWNLQT--------RKKIKNFAKFNEDSVVKIACS-DNILCLATSDD 314

Query: 291 MVRVWDPITHNI 302
             +    I   I
Sbjct: 315 TFKTNAAIDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 259 MHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL 317
           M I+         ++ +    +  LL+  S DG + V+             +    + +L
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 318 VV 319
             
Sbjct: 61  CC 62

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 19/125 (15%)

Query: 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHL 166
           +     RL  K       V  + FS    FL +   DG +  W+L            +  
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL-----------QTRK 284

Query: 167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL 226
            + +F        D V+        +  A+ D T K  + +   +  N    S I    +
Sbjct: 285 KIKNFAKFN---EDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELN---ASSI--YII 336

Query: 227 DPAEH 231
              E+
Sbjct: 337 FDYEN 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.6 bits (132), Expect = 4e-09
 Identities = 23/303 (7%), Positives = 62/303 (20%), Gaps = 23/303 (7%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSAS 59
           ++     +     +G +D  +G  +   ++                 +A+ +        
Sbjct: 55  KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 114

Query: 60  SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-ASGRLLKKW 118
                       +  +            A                 +      GR +   
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLR 177
                      F  D   L   S          +   F      +   + L   + +  +
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI---ALDPAEHVFY 234
           +          +         +     ++  G     I   S I              + 
Sbjct: 235 LVPR--SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 292

Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
                G +    +                 +++    +T L  S     ++   +DG + 
Sbjct: 293 GAPEKGVLLKYDVKT-------------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339

Query: 294 VWD 296
            + 
Sbjct: 340 TFP 342

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 8e-08
 Identities = 20/160 (12%), Positives = 44/160 (27%), Gaps = 20/160 (12%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            +   S   +     D           S    P  +  +      +  +    ++ +G  
Sbjct: 192 NLYYLS-YRSLDPSPDRVVLNFSFEVVSK---PFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSH------------GTYIAGGGQSGDIYMWEVAS 111
                 K    +   P +    I   S               Y  G  + G +  ++V +
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

Query: 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
            ++          +T L  S D   ++   +DG +  + L
Sbjct: 308 RKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 24/207 (11%), Positives = 50/207 (24%), Gaps = 25/207 (12%)

Query: 17  CWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEV 75
            +D+E           +           + L   S     PS     + +      +  V
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222

Query: 76  KSLPAEPIKPIAANSHGTYIAGGGQSGD-------IYMWEVASGRLLKKWHAHYRAVTCL 128
             L      P            G    +           +    R++    +     +  
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188
           V  E  ++     E G +  + + T                  T     +TD+ +     
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKT---------------RKVTEVKNNLTDLRLSADR- 326

Query: 189 SATIVSASEDRTCKVWSLLKGRLLRNI 215
             T++   +D     + L K    R +
Sbjct: 327 -KTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 24/218 (11%), Positives = 54/218 (24%), Gaps = 17/218 (7%)

Query: 92  GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIW 149
           G  IA   + G  ++ +V+   +LK        +  +    D              + I+
Sbjct: 15  GDLIAFVSR-GQAFIQDVSGTYVLKVPEPL--RIRYVRRGGDTKVAFIHGTREGDFLGIY 71

Query: 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209
              T                 F  +   +  + +   G  A + +   +         K 
Sbjct: 72  DYRTGK------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269
            ++       + D    D +  + Y            +          G  I  + +++S
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179

Query: 270 KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
                   +    L   S   +    D +  N      
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 5e-09
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAHYR 123
            W++   ++   S                 +A G    +I+++ V    +++K  +AH  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLL 152
            V  L++    + L+S   D C++ W+++
Sbjct: 260 GVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                          +   + +GS D  + I+S+          +     + +   H   
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV----------KRPMKIIKALNAHKDG 260

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLL 207
           + +++        T+VS+  D   K W+++
Sbjct: 261 VNNLLWETPS---TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (117), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDL 282
           A   +  E +   GS D +I+I ++           M II +L+ H   V  L + T   
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKR--------PMKIIKALNAHKDGVNNLLWETPST 271

Query: 283 LISGSEDGMVRVWD 296
           L+S   D  ++ W+
Sbjct: 272 LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156
              +LK    H + +T L  +     LISGS DG +  WS  ++ +
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299
           + ++S H+K +T L  +    LISGS DG +  W   +
Sbjct: 6   LKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSS 40

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 7e-09
 Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 87  AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV 146
                  Y+  G     I +++  + + L +   H   V  L ++  G  L+SGS D  V
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV 76

Query: 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206
           R+W +         +  +             I  IV G           S D T  VW L
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG-----------SRDNTLHVWKL 125

Query: 207 LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266
            K   + +         +   P E+ ++ G   G +          + S +G  ++    
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA------SVRTVSGHGNIVVSGSY 179

Query: 267 DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMF 306
           D++  V  +A      ++SG  D +               
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 219

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 2/88 (2%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYR 123
               +       S     +  I        I   G      ++ + SG+L+         
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSL 151
            +  + F      + +  +DG   +  L
Sbjct: 326 QIWSVNFKGKT-LVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 8e-07
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           +L  H  +V        + +I+G++D M+RV+D I    +       G V  +
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 14/108 (12%)

Query: 99  GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
             +        A+    K  + H        F    + L+SGS +    I++L       
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL------- 310

Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206
              R+  L   +      +I  +      +   + +  +D    +  L
Sbjct: 311 ---RSGKLVHANILKDADQIWSVNFKGKTL---VAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 28/314 (8%), Positives = 74/314 (23%), Gaps = 9/314 (2%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            + + +  D  I  +D  +    L+          L       L S              
Sbjct: 25  YVITGA-DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR----VW 79

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
                    V            I    +  YI  G +   +++W++     +      + 
Sbjct: 80  DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
                   E+  + +         + S+ TV        +             ++  + I
Sbjct: 140 YPLVFHTPEENPYFVGVL---RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196

Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243
             G       +  +    +  S      +R     +      L     +           
Sbjct: 197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFL 256

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303
           ++A    S        +       H+       +   D ++    +    +++  +  +V
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 316

Query: 304 RMFRLA-KGPVNNI 316
               L     + ++
Sbjct: 317 HANILKDADQIWSV 330

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 35/248 (14%), Positives = 78/248 (31%), Gaps = 24/248 (9%)

Query: 49  SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108
            S + +        +++ +  +    V  L          + HG  +  G     + +W+
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187

Query: 109 VASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL 168
           VA  + L     H   +   ++  +    IS S D  +RIW L         Q  + L  
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 247

Query: 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP 228
                                  +VSA+ D + + W         +    ++        
Sbjct: 248 LLRLSDK---------------FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292

Query: 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE 288
           ++++  +GS +    I   N  S      G  +  ++   +  +  + +    L+ +  +
Sbjct: 293 SDNILVSGS-ENQFNI--YNLRS------GKLVHANILKDADQIWSVNFKGKTLVAAVEK 343

Query: 289 DGMVRVWD 296
           DG   +  
Sbjct: 344 DGQSFLEI 351

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.8 bits (128), Expect = 1e-08
 Identities = 21/258 (8%), Positives = 52/258 (20%), Gaps = 17/258 (6%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
                 P     S+           S    +     S       V      +   +    
Sbjct: 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF 168

Query: 125 V-------TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                   T  + S   S   S           +            +             
Sbjct: 169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT------GAQNCSSQAAQANYP 222

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
              +      +    + A+           +     +    +    +A           +
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282

Query: 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS---TGDLLISGSEDGMVRV 294
            + S    A    + S ++      G +  +      +  +     D   + +   ++ +
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341

Query: 295 WDPITHNIVRMFRLAKGP 312
           +D  +        L KGP
Sbjct: 342 YDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.5 bits (122), Expect = 8e-08
 Identities = 31/271 (11%), Positives = 67/271 (24%), Gaps = 29/271 (10%)

Query: 79  PAEPIKPIAANSHGTYI---AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS 135
            +    P  A S  ++I   A    + + ++     G  L      + ++   V    GS
Sbjct: 21  SSCDHGP-GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLA--VAGHSGS 77

Query: 136 FLI----------SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185
                         G     V ++  +T     +      + L      ++     +IG 
Sbjct: 78  DFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD------IELPDAPRFSVGPRVHIIGN 131

Query: 186 GGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI 244
              SA +             S+      +     S         A    Y GS   S+  
Sbjct: 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLT--KSASCFHIHPGAAATHYLGSCPASLAA 189

Query: 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR 304
           + L A     ++ G+         + +      +   +L+  +    +   D        
Sbjct: 190 SDLAAA---PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATM 245

Query: 305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335
              +            R     + +      
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 19/220 (8%), Positives = 54/220 (24%), Gaps = 13/220 (5%)

Query: 5   IASSSVADTGIGCWDLESGAE--QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGS 62
           +       +      +   ++    +  SC     G A         + L     A++ +
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197

Query: 63  ILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122
                 ++                 AN  G  +     S        A   +      + 
Sbjct: 198 AAGIVGAQCTGAQNCSSQ----AAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253

Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR----- 177
                  F   G  +++  ++    +   +     C +   +   + +  G T       
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 178 --ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215
                I+    G S    +++      ++     +   ++
Sbjct: 314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.5 bits (126), Expect = 2e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153
           G + +  + H +A+T L  S DG  L S   +G +  W + T
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.5 bits (121), Expect = 7e-08
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 91  HGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
               +A G     + +W +       +    AH  +    V   + + ++S  +D  ++ 
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

Query: 149 WSL 151
           W++
Sbjct: 295 WNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS 287
           P       GS D S+ +  +N  S         II   +    +V  + +     ++S  
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPS------DHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287

Query: 288 EDGMVRVWD 296
           +D  ++ W+
Sbjct: 288 QDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 265 LSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFR 307
              H+KA+T L+ S  G  L S   +G +  WD  T    R+F 
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           W  H   V C+ +S D   L +GS D  V +W++    +           +     H + 
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP---------IIIKGAHAMS 270

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSL 206
             + VI       TIVSA +D   K W++
Sbjct: 271 SVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 33/263 (12%), Positives = 69/263 (26%), Gaps = 26/263 (9%)

Query: 82  PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFSEDGSFLISG 140
            I  +++++ G  +      G I  W++++G   + +   H   +T +  +     L + 
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTV 72

Query: 141 SEDGCVRIWSLLT--------VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192
           S D  +++             V  +  SQ                    +  Y     T 
Sbjct: 73  SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 132

Query: 193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252
           V  S + +C   S  K  +        V        +            I   A +    
Sbjct: 133 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 192

Query: 253 STSSYGMHIIGSL----------------SDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
              +                            +K            L +GS D  V VW+
Sbjct: 193 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 252

Query: 297 PITHNIVRMFRLAKGPVNNILVV 319
               +   +       ++++  V
Sbjct: 253 MNKPSDHPIIIKGAHAMSSVNSV 275

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 43/286 (15%), Positives = 74/286 (25%), Gaps = 60/286 (20%)

Query: 86  IAANSHGTYIA-GGGQSGDIYMWEVASGRL--LKKWHAHY-RAVTCLVFS--EDGSFLIS 139
           ++ +     IA   G+S  +   +    ++  + ++  H    VT + FS  +   +L S
Sbjct: 23  LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 82

Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199
           G E G V +W       + ES          F      I+DI   + G    +V    D 
Sbjct: 83  GDESGKVIVWGWTF---DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259
                S   G  L  +   S               + +      +          S+   
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 260 HIIGSLSDHSKAVTCLAYST---------------------------------------- 279
                       V  + +S                                         
Sbjct: 200 THHK----QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 280 -------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318
                       +   D  +RVWD  T   V+ + L K  + N  V
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 4e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL---VFSEDGSFLISGSEDGCVR 147
                A  G    I +W+V + + ++KW    + +      V +     +IS S DG + 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 148 IWSL 151
            + L
Sbjct: 322 FYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                +     +   D     +   D  +R+W +            +   +  +T    +
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-----------TTSKCVQKWTLDKQQ 295

Query: 178 ITDIVIGYGGVS-ATIVSASEDRTCKVWSL 206
           + +  +G        I+S S D T   + L
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290
             F     D +I +        +TS                   +  +    +IS S DG
Sbjct: 264 QKFATVGADATIRVW-----DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 291 MVRVWD 296
            +  ++
Sbjct: 319 TLNFYE 324

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 21/257 (8%), Positives = 54/257 (21%), Gaps = 14/257 (5%)

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
             +                      +  +  +           +  + + ++      + 
Sbjct: 85  PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144

Query: 118 WHAHYRA-------VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170
                          T  +   DGS              +   VF   +    +H     
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 204

Query: 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230
             G  +  T      G +    +S+ + +       L      +   P     +A   A 
Sbjct: 205 KAGRLVWPTY----TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS---TGDLLISGS 287
              Y        +     +              +  +    +  +  S      L    +
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320

Query: 288 EDGMVRVWDPITHNIVR 304
            D  + + D  +   +R
Sbjct: 321 GDKTLYIHDAESGEELR 337

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 34/241 (14%), Positives = 63/241 (26%), Gaps = 27/241 (11%)

Query: 81  EPIKPIAANSHGTYI-----AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS 135
           EP    A       +     A        ++ +  +GR++      +  +   V ++DGS
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGS 59

Query: 136 FL----------ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185
           F+            G     V ++  +T            L                +  
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVT----LLPTADIELPDAPRFLVGTYPWMTSLTP 115

Query: 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIA 245
            G +      S      V  L      R +             A   F+   RDGS+   
Sbjct: 116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRML--DVPDCYHIFPTAPDTFFMHCRDGSLAKV 173

Query: 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPITHNIVR 304
           A        +    H      +    +   AYS     L+  +  G +   D  + +   
Sbjct: 174 AF---GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF 230

Query: 305 M 305
           +
Sbjct: 231 L 231

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 86  IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
           +     G  I        +Y   V S    + +  H    T    S  G +  SG   G 
Sbjct: 23  LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 146 VRIWSLLTVFEECESQRASH 165
           VRIW         ++     
Sbjct: 82  VRIWDTTQTTHILKTTIPVF 101

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 8e-06
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 12/87 (13%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
             AH  +V  L +S DG+ + S S D  ++IW++           A+     +    T R
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV-----------ATLKVEKTIPVGT-R 281

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVW 204
           I D  +G       +VS S +      
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 29/290 (10%), Positives = 71/290 (24%), Gaps = 14/290 (4%)

Query: 9   SVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW 68
               T +    + S  +   Y   +            +  +S          G++  W  
Sbjct: 34  YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS------GDVHGNVRIWDT 87

Query: 69  SKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL 128
           ++    +K+       P+   S  +        G+                         
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR 147

Query: 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188
             +                  + + +FE    +  S    H+   H++R       +   
Sbjct: 148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207

Query: 189 SATIVSASED-RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247
                    +        + +   L+N+     +  +   P      + S D +I I  +
Sbjct: 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267

Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297
                         I   +        + ++    L+S S +G +   +P
Sbjct: 268 ATLKV------EKTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 11/85 (12%)

Query: 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGD 281
            +   PA       +   S+Y   + + + +            ++HS   T    S +G 
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEI---------YTEHSHQTTVAKTSPSGY 71

Query: 282 LLISGSEDGMVRVWDPITHNIVRMF 306
              SG   G VR+WD      +   
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKT 96

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 22/264 (8%), Positives = 54/264 (20%), Gaps = 9/264 (3%)

Query: 57  SASSGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115
             +  S+           E+ +  +        +  G Y A G   G++ +W+       
Sbjct: 34  YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT------ 87

Query: 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT 175
            +     +    +                   +      F             +      
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR 147

Query: 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235
              +              S             K +         V               
Sbjct: 148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207

Query: 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295
           G     +    ++               + S     +T      G  + S S D  +++W
Sbjct: 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW--SPDGTKIASASADKTIKIW 265

Query: 296 DPITHNIVRMFRLAKGPVNNILVV 319
           +  T  + +   +     +  L +
Sbjct: 266 NVATLKVEKTIPVGTRIEDQQLGI 289

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 67  SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT 126
           SW K  V+ +  P + +     +    +      +G I + +  S +++K     Y AV 
Sbjct: 10  SW-KVLVKPEDRPKKQL--NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVH 65

Query: 127 CLVFSEDGSFLISGSEDGCVRIWSLLT 153
               S  G +L+    D  + +  L  
Sbjct: 66  ISRMSASGRYLLVIGRDARIDMIDLWA 92

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 14/140 (10%), Positives = 36/140 (25%), Gaps = 6/140 (4%)

Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236
           R    +      +   V+  +     +      ++++ I     +    +  +       
Sbjct: 20  RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI 79

Query: 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMVRV 294
            RD  I +  L A+ P+        I    +     +       D   +          +
Sbjct: 80  GRDARIDMIDLWAKEPTKV----AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135

Query: 295 WDPITHNIVRMFRLAKGPVN 314
            D  T    ++       V+
Sbjct: 136 MDGETLEPKQIVSTRGMTVD 155

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 13/183 (7%)

Query: 67  SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT 126
           SW K  V  +  P + +     +    +      +G I + + ++  +       Y AV 
Sbjct: 10  SW-KVHVAPEDRPTQQM--NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVH 65

Query: 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186
               S  G +L     DG V +  L         +  +   +   +      T  + G+ 
Sbjct: 66  ISRLSASGRYLFVIGRDGKVNMIDLWM------KEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-VIDAIALDPAEHVFY-AGSRDGSIYI 244
              A I  A       +         +         D     P   V     S     +I
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 245 AAL 247
             +
Sbjct: 179 VNV 181

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 9e-06
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236
           R T  +  +   +   V+  +     +       +   +     +    L  +    +  
Sbjct: 20  RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI 79

Query: 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMVRV 294
            RDG + +  L  + P+T    +  I   S+     T       D   +          +
Sbjct: 80  GRDGKVNMIDLWMKEPTT----VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 135

Query: 295 WDPITHNIVRMFRLAKGPVN 314
            D  T    ++        +
Sbjct: 136 MDGETLEPKKIQSTRGMTYD 155

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 94  YIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWS 150
           YIA    S  I++W +     L   +       V  +V S D  +L +    +  V  + 
Sbjct: 7   YIASPE-SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 151 LLTVFEECESQRASHL 166
           +            S L
Sbjct: 66  IAPDDGALTFAAESAL 81

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLT 153
            M +  + ++  +          +  + DG  + ++ S    V +    T
Sbjct: 227 SMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	451
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.31
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.28
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.19
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.18
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.85
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.82
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.68
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.31
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.3
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.28
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.26
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.26
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.98
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.71
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.58
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.44
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.35
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.29
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.25
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.99
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.96
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.91
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.76
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.13
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.77
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.66
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.72
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.36
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	90.12
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.95
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.87
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	83.99

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-44  Score=326.49  Aligned_cols=278  Identities=19%  Similarity=0.288  Sum_probs=248.7

Q ss_pred             CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEE
Q 012996           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMW  107 (451)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  107 (451)
                      .|...|.+++  |+|+|++|++++ | |.|+|||+.+....      ....|.+.|.+++|+|++++|++|+.||.|++|
T Consensus        49 ~H~~~V~~v~--fs~~g~~latg~-d-g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iw  124 (337)
T d1gxra_          49 NHGEVVCAVT--ISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEE--ECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             CCCCcEEEEE--ECCCCCEEEEEE-C-CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccc
Confidence            4677889999  999999999986 5 89999999754321      123477899999999999999999999999999


Q ss_pred             EcCCC--cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          108 EVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       108 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      |+...  +....+..|...+.+++|+|++.++++++.|+.|++|++.+           .........|...|.+++|++
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~-----------~~~~~~~~~~~~~v~~l~~s~  193 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----------QTLVRQFQGHTDGASCIDISN  193 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-----------ccccccccccccccccccccc
Confidence            98754  45667788999999999999999999999999999999954           345666778999999999999


Q ss_pred             cCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996          186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (451)
Q Consensus       186 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (451)
                      ++  ..+++++.|+.+++||+++++.+..+.+...|.+++|+|++++|++|+.|+.+++||++...          ....
T Consensus       194 ~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~  261 (337)
T d1gxra_         194 DG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------KYQL  261 (337)
T ss_dssp             TS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----------EEEE
T ss_pred             cc--cccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccc----------cccc
Confidence            88  89999999999999999999999999999999999999999999999999999999998764          3356


Q ss_pred             ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       266 ~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ..|...|++++|+| +++|++|+.||.|++||+.+++++..+. |.++|++++|+|++++|++|+.||.|++|++
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            68999999999999 9999999999999999999999998875 6789999999999999999999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-43  Score=325.26  Aligned_cols=315  Identities=18%  Similarity=0.245  Sum_probs=255.2

Q ss_pred             ecCCCCCCeEEEECccCceee-eeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--------
Q 012996            7 SSSVADTGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------   77 (451)
Q Consensus         7 s~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--------   77 (451)
                      .+. .++.+.+|+....+... .+....+|...|.|++  |+|+|++||+|+ | +.|+|||+.++......        
T Consensus        33 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~--fs~dg~~lasg~-d-~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          33 KKQ-TNDYYILYNPALPREIDVELHKSLDHTSVVCCVK--FSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             EEE-CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEE--ECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC------
T ss_pred             ccC-CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEE--ECCCCCEEEEEe-C-CeEEEEEecccceEeeecccccccc
Confidence            345 67889999976554332 1222224778899999  999999999875 5 89999999877654322        


Q ss_pred             -----------cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcE
Q 012996           78 -----------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV  146 (451)
Q Consensus        78 -----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  146 (451)
                                 .+...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.|++++..+++++.++.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceee
Confidence                       245679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------c
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------F  217 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~  217 (451)
                      ++||..+           .........+. ...++.+.+ ++  .+|++++.||.|++||..++.....+.        |
T Consensus       188 ~~~d~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h  253 (388)
T d1erja_         188 RIWDLRT-----------GQCSLTLSIED-GVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  253 (388)
T ss_dssp             EEEETTT-----------TEEEEEEECSS-CEEEEEECSTTC--CEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             eeeeccc-----------ccccccccccc-ccccccccCCCC--CeEEEEcCCCeEEEeecccCccceeeccccccccCC
Confidence            9999954           22333334344 444555554 44  899999999999999999988776653        4


Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC---CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996          218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS---SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR  293 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~  293 (451)
                      ...|.+++|+|++.+|++|+.||.|++||+........   ............|...|++++|+| +.+|++|+.||.|+
T Consensus       254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~  333 (388)
T d1erja_         254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  333 (388)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence            67899999999999999999999999999987643221   112234556678999999999999 99999999999999


Q ss_pred             EEeCCCCceEEEeecCCCCeeEEEE------EecCceeeeccCCCCccccccC
Q 012996          294 VWDPITHNIVRMFRLAKGPVNNILV------VRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~v~~l~~------s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      +||+.+++++.++.+|.++|+++++      +|++.+|++|+.||.|++|+++
T Consensus       334 vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999999999999999975      5789999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-42  Score=308.22  Aligned_cols=293  Identities=19%  Similarity=0.345  Sum_probs=262.4

Q ss_pred             EEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEE
Q 012996           17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYI   95 (451)
Q Consensus        17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l   95 (451)
                      .|.. ......++++   |...|.+++  |+|++++|++++.| |+|+|||+.+++.... ..|...|.+++|+|++.++
T Consensus         2 ~w~p-~~~~~~~L~G---H~~~I~~l~--~sp~~~~l~s~s~D-g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1           2 EWIP-RPPEKYALSG---HRSPVTRVI--FHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             CCCC-CSSCSCEEEC---CSSCEEEEE--ECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccCC-CCCccEEEcC---CCCCeEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccc
Confidence            3533 3344456665   557789999  99999999999988 9999999998776544 4578999999999999999


Q ss_pred             EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc
Q 012996           96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (451)
Q Consensus        96 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (451)
                      ++++.++.+.+|+.........+..|...+.++.|+|++..+++++.|+.+++||+++           ......+.+|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----------~~~~~~~~~~~  143 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-----------GYCVKTFTGHR  143 (317)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc-----------ceeeeEEccCC
Confidence            9999999999999999988888899999999999999999999999999999999954           44567788899


Q ss_pred             CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCC--------------------CEEE
Q 012996          176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE--------------------HVFY  234 (451)
Q Consensus       176 ~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~--------------------~~l~  234 (451)
                      ..+.++++++++  .++++++.|+.|++|++.+++....+. +...+.+++++|++                    .+++
T Consensus       144 ~~~~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T d1vyhc1         144 EWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  221 (317)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             CcceeeecccCC--CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence            999999999988  899999999999999999998888776 67788888888753                    4689


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV  313 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  313 (451)
                      +++.|+.|++||+.+.         .++..+.+|...|.+++|+| +.+|++|+.||.|++||+.+++++.++.+|.++|
T Consensus       222 ~~~~d~~i~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V  292 (317)
T d1vyhc1         222 SGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV  292 (317)
T ss_dssp             EEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred             eccCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            9999999999999886         66788899999999999999 9999999999999999999999999999999999


Q ss_pred             eEEEEEecCceeeeccCCCCccccc
Q 012996          314 NNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       314 ~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      ++++|+|++++|++|+.||.|++||
T Consensus       293 ~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-42  Score=306.30  Aligned_cols=284  Identities=13%  Similarity=0.141  Sum_probs=239.0

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce--
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--  115 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--  115 (451)
                      ..+++  ++|+|+.++.+..  +.|.+|++.+.... ....|.+.|++++|+|+|++||+|+.||.|+|||+.++...  
T Consensus        20 ~~~~a--~~~~g~~l~~~~~--~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          20 AVVLG--NTPAGDKIQYCNG--TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             CCCCE--ECTTSSEEEEEET--TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             eEEEE--EcCCCCEEEEEeC--CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            34556  9999999998865  68999999877654 34568899999999999999999999999999999888654  


Q ss_pred             eeeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996          116 KKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (451)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  193 (451)
                      ..+..|.++|.+++|+|++++|++++.  +..+++|++.+           ......+.+|...|.+++|+|++. ..++
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~-----------~~~~~~l~~h~~~v~~v~~~~~~~-~~l~  163 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-----------GTSNGNLTGQARAMNSVDFKPSRP-FRII  163 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-----------CCBCBCCCCCSSCEEEEEECSSSS-CEEE
T ss_pred             cccccccCcccccccccccccccccccccccccccccccc-----------ccccccccccccccccccccccce-eeec
Confidence            457889999999999999999999886  45699999854           345667889999999999999873 4688


Q ss_pred             EeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996          194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (451)
Q Consensus       194 s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  272 (451)
                      +|+.|+.|++||+++++....+. |...|.++.|+|+++++++++.|+.|++||+..........  .......+|...|
T Consensus       164 sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~h~~~V  241 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE--DDSLKNVAHSGSV  241 (311)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB--CTTSSSCSSSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            99999999999999998888776 78899999999999999999999999999998764211100  1112345789999


Q ss_pred             eEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCceeeeccCCCCccccccC
Q 012996          273 TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       273 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ++++|+| +++|++|+.||.|+|||+.++++++++..|.. ....+.+.+++.+|++++.||.|++||.+
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            9999999 99999999999999999999999999987754 34455677778899999999999999963

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-39  Score=290.42  Aligned_cols=288  Identities=19%  Similarity=0.307  Sum_probs=244.0

Q ss_pred             ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCC
Q 012996           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSG  102 (451)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg  102 (451)
                      +..++++   +|...|.+++  |+|++++||+++.| |+|+|||+.++..... ..|..+|.+++|+|+++++++|+.|+
T Consensus        46 ~~~~tL~---GH~~~I~~l~--~s~~~~~l~sgs~D-g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          46 RTRRTLR---GHLAKIYAMH--WGTDSRLLVSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CEEEEEC---CCSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eeeEEEC---CCCCCEEEEE--ECCCCCEEEEEECC-CceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccc
Confidence            3444555   5668899999  99999999999998 9999999998876544 45788999999999999999999999


Q ss_pred             CEEEEEcCCCc----ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996          103 DIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (451)
Q Consensus       103 ~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (451)
                      .+.+|+.....    ....+.+|........... +..+.....|.....+....           .........+...+
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  187 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIET-----------GQQTTTFTGHTGDV  187 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTT-----------TEEEEEEECCSSCE
T ss_pred             eeecccccccccccccceeccccccccccccccc-cccccccccccccccccccc-----------ccccccccccceeE
Confidence            99999986653    3445667777766665554 45677888888898888743           33344555677788


Q ss_pred             eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      ....+.+..  .++++++.|+.|++||+++++.+..+. |...|.+++|+|++.+|++|+.||.|++||++....     
T Consensus       188 ~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-----  260 (340)
T d1tbga_         188 MSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----  260 (340)
T ss_dssp             EEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred             eeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc-----
Confidence            888887777  899999999999999999999998887 788999999999999999999999999999987631     


Q ss_pred             CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i  336 (451)
                        ........|...|++++|+| +.+|++|+.||.|++||+.+++++.++.+|.++|++++|+|++++|++|+.||.|++
T Consensus       261 --~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         261 --LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             --EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             --ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence              12223456778899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 012996          337 SR  338 (451)
Q Consensus       337 w~  338 (451)
                      ||
T Consensus       339 Wd  340 (340)
T d1tbga_         339 WN  340 (340)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-39  Score=291.55  Aligned_cols=265  Identities=16%  Similarity=0.242  Sum_probs=228.5

Q ss_pred             EEeecCCCCCCeEEEECccCceeeee--ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---eeec
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRY--KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSL   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---~~~~   78 (451)
                      +||+|+  ||.|+|||+.++.....+  ....+|...|.+++  |+|++++|++++.| |.|++||+......   ....
T Consensus        65 ~latg~--dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~--~s~dg~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~  139 (337)
T d1gxra_          65 HVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK--LLPDGCTLIVGGEA-STLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             EEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEE--ECTTSSEEEEEESS-SEEEEEECCCC--EEEEEEEC
T ss_pred             EEEEEE--CCEEEEEEccCCcccceeEEeeecCCCCcEEEEE--EcCCCCEEEEeecc-ccccccccccccccccccccc
Confidence            688877  789999999876543322  22345778899999  99999999999998 99999998755432   2245


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      |...+.+++|+|++.++++++.++.|++|++.++++......|...|.+++|++++..+++++.||.+++||++++    
T Consensus       140 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~----  215 (337)
T d1gxra_         140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG----  215 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            7789999999999999999999999999999999999999999999999999999999999999999999999652    


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                             ..+.. ..|...|.+++|++++  .++++++.|+.+++||++++.......|...|.+++|+|++++|++|+.
T Consensus       216 -------~~~~~-~~~~~~i~~l~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         216 -------RQLQQ-HDFTSQIFSLGYCPTG--EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             -------EEEEE-EECSSCEEEEEECTTS--SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -------eeecc-cccccceEEEEEcccc--cccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeC
Confidence                   22333 3478899999999988  8999999999999999999988877779999999999999999999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~  297 (451)
                      ||.|++||+.+..         .+.. ..|...|++++|+| +++|++|+.||+|+|||+
T Consensus       286 Dg~i~iwd~~~~~---------~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         286 DNLLNAWRTPYGA---------SIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSEEEEEETTTCC---------EEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCC---------EEEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999998864         3333 35789999999999 999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-39  Score=286.08  Aligned_cols=263  Identities=17%  Similarity=0.211  Sum_probs=222.7

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee---eecCCC
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAE   81 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~   81 (451)
                      ||.+.  ++.|.+||+.++.....+.+   |...|.+++  |+|+|++||+++.| |+|++||+.+.....   ...|..
T Consensus        32 l~~~~--~~~v~i~~~~~~~~~~~~~~---H~~~v~~~~--~sp~g~~latg~~d-g~i~iwd~~~~~~~~~~~~~~~~~  103 (311)
T d1nr0a1          32 IQYCN--GTSVYTVPVGSLTDTEIYTE---HSHQTTVAK--TSPSGYYCASGDVH-GNVRIWDTTQTTHILKTTIPVFSG  103 (311)
T ss_dssp             EEEEE--TTEEEEEETTCSSCCEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEESSSTTCCEEEEEECSSS
T ss_pred             EEEEe--CCEEEEEECCCCceeEEEcC---CCCCEEEEE--EeCCCCeEeccccC-ceEeeeeeeccccccccccccccC
Confidence            44444  45799999999988888765   557899999  99999999999998 999999998766432   345788


Q ss_pred             CeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcchhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEEC  158 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~  158 (451)
                      +|.+++|+|++++|++++.  +..++||++.+++....+.+|...|++++|+|++++ |++|+.||.|++||+++     
T Consensus       104 ~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-----  178 (311)
T d1nr0a1         104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-----  178 (311)
T ss_dssp             CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-----
Confidence            9999999999999998875  456999999999999999999999999999998875 78899999999999954     


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------cccceeEEEECCCC
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAE  230 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~  230 (451)
                            ......+..|...|.++.++|++  +++++++.|+.|++||+.++.....+.        |...|.+++|+|++
T Consensus       179 ------~~~~~~~~~~~~~i~~v~~~p~~--~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         179 ------FKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             ------BEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             ------cccccccccccccccccccCccc--cccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence                  44567778899999999999988  899999999999999999988776654        46789999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc---ceeEEEEecCCEEEEEcCCCcEEEEeCC
Q 012996          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK---AVTCLAYSTGDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~s~~~dg~i~iwd~~  298 (451)
                      ++|++|+.||.|++||+++.         +++.++..|..   .+.++.|+ ++.|++++.||.|++||++
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~---------~~~~~l~~~~~~~~~~~~~~~~-~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATL---------KVEKTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTT---------EEEEEEECCSSGGGCEEEEEEC-SSCEEEEETTCCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCC---------cEEEEEECCCCccceEEEEEec-CCEEEEEECCCEEEEEeCC
Confidence            99999999999999999876         55666655543   34444444 6789999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.4e-40  Score=297.76  Aligned_cols=285  Identities=11%  Similarity=0.098  Sum_probs=229.6

Q ss_pred             CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  111 (451)
                      ...+|+|++  |+|+|+++|+++.+ |.|++||..+++..   ....|.++|.+++|+|++++|++|+.|+.|+|||+.+
T Consensus         6 ~~~pIt~~~--~s~dg~~la~~~~~-~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHA--WNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEE--ECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            456799999  99999999999888 99999999876533   2346889999999999999999999999999999987


Q ss_pred             Ccce--eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          112 GRLL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       112 ~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                      +...  ..+.+|...|.+++|+|+++.|++++.|+.+++|++....       ...........|...|.+++|+|++  
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~~p~~--  153 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN-------DWWVCKHIKKPIRSTVLSLDWHPNS--  153 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT-------TEEEEEEECTTCCSCEEEEEECTTS--
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeeccc-------ccccccccccccccccccccccccc--
Confidence            7543  4457789999999999999999999999999999985421       1112334456789999999999988  


Q ss_pred             eEEEEeeCCCcEEEEEcCCCc------------------eeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          190 ATIVSASEDRTCKVWSLLKGR------------------LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~------------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      .+|++|+.|+.|++||.....                  .+.... +...+.+++|+|++++|++++.|+.|++||+...
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            899999999999999986532                  222222 6678999999999999999999999999999876


Q ss_pred             CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC--CceEEE----------------------
Q 012996          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--HNIVRM----------------------  305 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~--~~~~~~----------------------  305 (451)
                               ..+..+..|..+|.+++|+| +.+|++| .|+.+++|....  +.....                      
T Consensus       234 ---------~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (371)
T d1k8kc_         234 ---------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  303 (371)
T ss_dssp             ---------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             ---------cceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEec
Confidence                     45777888999999999999 7666654 577766665332  211100                      


Q ss_pred             -----------------eecCCCCeeEEEEEecCc----eeeeccCCCCccccccCC
Q 012996          306 -----------------FRLAKGPVNNILVVRRPL----YLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       306 -----------------~~~~~~~v~~l~~s~~~~----~l~~~s~d~~i~iw~~~~  341 (451)
                                       ...|.+.|+++++.|.+.    .|+|++.||.+++|+++.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         304 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                             013888999999998653    588999999999999864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-38  Score=280.57  Aligned_cols=267  Identities=22%  Similarity=0.372  Sum_probs=239.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~   81 (451)
                      .+||||+ .||+|+|||+.+++.+.++..   |...|.+++  |+|++.++++++.+ +.+.+|+......... ..+..
T Consensus        30 ~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~---h~~~V~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  102 (317)
T d1vyhc1          30 SVMVSAS-EDATIKVWDYETGDFERTLKG---HTDSVQDIS--FDHSGKLLASCSAD-MTIKLWDFQGFECIRTMHGHDH  102 (317)
T ss_dssp             SEEEEEE-SSSCEEEEETTTCCCCEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCCCEEETTSSCEEECCCCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCCEEEEEeC---CCCcEEEEe--eecccccccccccc-cccccccccccccccccccccc
Confidence            4789999 999999999999999988875   456788888  99999999999888 9999999887665543 45788


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .+.++.|+|+++.+++++.|+.+++||+.+++.+..+.+|...+.+++|+|++.+|++++.|+.|++|++.+        
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~--------  174 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--------  174 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999954        


Q ss_pred             cccccceecccCCcCceeEEEEeecCC------------------eeEEEEeeCCCcEEEEEcCCCceeeeee-ccccee
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGV------------------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVID  222 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~  222 (451)
                         ......+.+|...+.++.++++..                  +..+++++.|+.|++||+++++++..+. |...|.
T Consensus       175 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  251 (317)
T d1vyhc1         175 ---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR  251 (317)
T ss_dssp             ---CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             ---ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence               445667778888888888876531                  2578999999999999999999988887 788999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      +++|+|++++|++|+.||.|++||+.+.         +++..+.+|...|++++|+| +.+|++|+.||+|+|||
T Consensus       252 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         252 GVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEECCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999876         45678889999999999999 99999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-38  Score=288.57  Aligned_cols=253  Identities=15%  Similarity=0.081  Sum_probs=214.7

Q ss_pred             ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcch
Q 012996           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  154 (451)
                      ....++|+|++|+|+|++||+|+.||.|+|||+.+++  .+..+.+|.++|.+++|+|++++|++|+.|+.|++||+.+ 
T Consensus         4 ~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~-   82 (371)
T d1k8kc_           4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-   82 (371)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-
T ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc-
Confidence            3456899999999999999999999999999998775  5677899999999999999999999999999999999964 


Q ss_pred             hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----cccceeEEEECCC
Q 012996          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIALDPA  229 (451)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~  229 (451)
                              ........+.+|...|.+++|+|++  +.+++++.|+.+++|++..........     +...|.+++|+|+
T Consensus        83 --------~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          83 --------RTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             --------TEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             --------ccccccccccccccccccccccccc--ccceeecccCcceeeeeeccccccccccccccccccccccccccc
Confidence                    2233455667899999999999988  899999999999999987665433222     5678999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCC---------CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTS---------SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~  299 (451)
                      +.+|++|+.|+.|++|+.........         ......+....+|...|.+++|+| +.+|++++.||.|++||+.+
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            99999999999999999876432211         111234566778999999999999 99999999999999999999


Q ss_pred             CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +..+..+..|..+|.+++|+|++++|++|+ |+.+++|....
T Consensus       233 ~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         233 KMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             TTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             ccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence            999999999999999999999998888765 77777776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-38  Score=277.90  Aligned_cols=286  Identities=14%  Similarity=0.124  Sum_probs=226.0

Q ss_pred             CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--cCCCCeeEEEECCCCcEEEEecc
Q 012996           23 GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQ  100 (451)
Q Consensus        23 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  100 (451)
                      |+..+.+++   |...|.+++  |+|++++|++++.| |+|++||+.+++.....  .|...|.+++|+|++.+++ ++.
T Consensus         2 g~~~~~~~G---H~~~V~~l~--~s~dg~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~   74 (299)
T d1nr0a2           2 GSIDQVRYG---HNKAITALS--SSADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSW   74 (299)
T ss_dssp             TEEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EET
T ss_pred             CccceEcCC---CCCCcEEEE--ECCCCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-ccc
Confidence            455556665   567899999  99999999999998 99999999987765443  4788999999999998655 566


Q ss_pred             CCCEEEEEcCCCcc---eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996          101 SGDIYMWEVASGRL---LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (451)
Q Consensus       101 dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (451)
                      |+.+++|+......   ......+...+.+++|+|++.++++++ ++.+.+|+...             ....  .....
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~-------------~~~~--~~~~~  138 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK-------------LTEV--PISYN  138 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE-------------EEEE--ECSSC
T ss_pred             eeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc-------------cccc--ccccc
Confidence            89999999865432   223345778899999999998776665 56899999743             1111  13345


Q ss_pred             eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                      +.+++|++++  .++++++.||.|++||+.+++...  ...|...|.+++|+|++.+|++++.|+.|++||+.+....  
T Consensus       139 ~~~~~~s~~~--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--  214 (299)
T d1nr0a2         139 SSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL--  214 (299)
T ss_dssp             EEEEEECTTS--CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE--
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            6788999887  899999999999999998876543  3447889999999999999999999999999999876421  


Q ss_pred             CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE--eecC-CCCeeEEEEEecCceeeeccCC
Q 012996          256 SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM--FRLA-KGPVNNILVVRRPLYLNLGSFS  331 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~-~~~v~~l~~s~~~~~l~~~s~d  331 (451)
                          .....+.+|..+|++++|+| +.+|++|+.||.|++||+.++.....  ...| ...|..+. ++++.+|++++.|
T Consensus       215 ----~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D  289 (299)
T d1nr0a2         215 ----AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQD  289 (299)
T ss_dssp             ----SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETT
T ss_pred             ----cccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCC
Confidence                22445678999999999999 99999999999999999987654333  2333 34566664 5667899999999


Q ss_pred             CCccccccC
Q 012996          332 NPHTSSRRH  340 (451)
Q Consensus       332 ~~i~iw~~~  340 (451)
                      +.|++|++.
T Consensus       290 ~~i~iWdl~  298 (299)
T d1nr0a2         290 SNIKFWNVP  298 (299)
T ss_dssp             SCEEEEECC
T ss_pred             CEEEEEecc
Confidence            999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-38  Score=282.19  Aligned_cols=300  Identities=16%  Similarity=0.232  Sum_probs=238.5

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP---   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~---   79 (451)
                      .+||||+ .||+|+|||+.+++.+.++.+|   ...|.+++  |+|+ .++++++.| |.|++|+............   
T Consensus        24 ~~l~tgs-~Dg~i~vWd~~~~~~~~~l~~H---~~~V~~l~--~s~~-~~l~s~s~D-~~i~iw~~~~~~~~~~~~~~~~   95 (355)
T d1nexb2          24 NYVITGA-DDKMIRVYDSINKKFLLQLSGH---DGGVWALK--YAHG-GILVSGSTD-RTVRVWDIKKGCCTHVFEGHNS   95 (355)
T ss_dssp             TEEEEEE-TTTEEEEEETTTTEEEEEEECC---SSCEEEEE--EETT-TEEEEEETT-CCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCcEEEEEECC---CCCEEEEE--EcCC-CEEEEEecc-cccccccccccccccccccccc
Confidence            4789999 9999999999999999999865   46788888  9885 578888888 9999999998876654432   


Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-----------------------eccccCCeeEEEEccCCcE
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-----------------------WHAHYRAVTCLVFSEDGSF  136 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~  136 (451)
                      ........+++++.++++++.|+.|++||+.+......                       ...|...+.  .+.+++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~  173 (355)
T d1nexb2          96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNI  173 (355)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTE
T ss_pred             cccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccce
Confidence            33455667788999999999999999999976543322                       122333333  34556889


Q ss_pred             EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee
Q 012996          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV  216 (451)
Q Consensus       137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  216 (451)
                      ++++..|+.|++||+.+           ...+....++...+.++.+++.+  ..+++++.|+.|++||+.++..+..+.
T Consensus       174 ~~~~~~d~~i~~~d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         174 VVSGSYDNTLIVWDVAQ-----------MKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             eeeecccceeeeeeccc-----------ccceeeeeccccccccccccccc--eeeecccccceEEeeeccccccccccc
Confidence            99999999999999954           44566677888899999999988  899999999999999999999988887


Q ss_pred             -cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE-ecCCEEEEEcCCCcEEE
Q 012996          217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRV  294 (451)
Q Consensus       217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~dg~i~i  294 (451)
                       |...|.+++++  +++|++|+.||.|++||+++..           ..+..|...+.++.+ +++..+++++.||.|++
T Consensus       241 ~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~v  307 (355)
T d1nexb2         241 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-----------RKFSYHHTNLSAITTFYVSDNILVSGSENQFNI  307 (355)
T ss_dssp             CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC-----------EEEEEECTTCCCCCEEEECSSEEEEEETTEEEE
T ss_pred             cccccccccccc--cceeeeeecccccccccccccc-----------eecccccCCceEEEEEcCCCCEEEEEeCCEEEE
Confidence             78889999986  4699999999999999998753           234456667776655 44444445556999999


Q ss_pred             EeCCCCceEE-EeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996          295 WDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (451)
Q Consensus       295 wd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~  339 (451)
                      ||+++++++. .+.+|.++|++++|+|+ .++++++.||.+++|..
T Consensus       308 wd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         308 YNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            9999999886 46789999999999987 47888999999777654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-37  Score=279.65  Aligned_cols=274  Identities=19%  Similarity=0.291  Sum_probs=220.2

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCC---------------CCCCceEEecceEeeccCcccCCCCCCccEEEEEC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCA---------------SPPHGLACVGQRFLASSQLREQPSASSGSILYWSW   68 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~   68 (451)
                      +||+|+  |++|+|||+.+++.+..+..+.               .+...|.+++  |+|++++|++++.| |.|++|+.
T Consensus        76 ~lasg~--d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~--~s~~~~~l~s~~~d-g~v~i~~~  150 (388)
T d1erja_          76 YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKFLATGAED-RLIRIWDI  150 (388)
T ss_dssp             EEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSEEEEEETT-SCEEEEET
T ss_pred             EEEEEe--CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEE--ECCCCCcceecccc-cccccccc
Confidence            678876  8899999999999888775442               3556688999  99999999999998 99999999


Q ss_pred             CCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc-cCCcEEEEeeCCCcE
Q 012996           69 SKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCV  146 (451)
Q Consensus        69 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i  146 (451)
                      ..++.... ..|...|.++++++++..+++|+.++.+++||..+.........+...+ ++.++ +++.+|++|+.||.|
T Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i  229 (388)
T d1erja_         151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSPGDGKYIAAGSLDRAV  229 (388)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSTTCCEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccc-cccccCCCCCeEEEEcCCCeE
Confidence            88776544 4478999999999999999999999999999999888777776555544 55555 488999999999999


Q ss_pred             EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee-------------
Q 012996          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-------------  213 (451)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------  213 (451)
                      ++|++.+.......    ........+|...|.+++|++++  .+|++++.||.|++||++++....             
T Consensus       230 ~i~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         230 RVWDSETGFLVERL----DSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             EEEETTTCCEEEEE----C------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             EEeecccCccceee----ccccccccCCCCCEEEEEECCCC--CEEEEEECCCcEEEEeccCCccccccccccccceeee
Confidence            99999653221110    11223345789999999999988  899999999999999998654322             


Q ss_pred             eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE------ec-CCEEEEE
Q 012996          214 NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY------ST-GDLLISG  286 (451)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~-~~~l~s~  286 (451)
                      ...|...|.+++|+|++++|++|+.||.|++||+.++         +++..+.+|...|+++++      +| +.+|++|
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence            1226678999999999999999999999999999886         567889999999999975      56 7899999


Q ss_pred             cCCCcEEEEeCC
Q 012996          287 SEDGMVRVWDPI  298 (451)
Q Consensus       287 ~~dg~i~iwd~~  298 (451)
                      +.||+|+||+++
T Consensus       375 s~Dg~I~iW~~~  386 (388)
T d1erja_         375 SGDCKARIWKYK  386 (388)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCEEEEEeee
Confidence            999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-36  Score=271.19  Aligned_cols=278  Identities=13%  Similarity=0.143  Sum_probs=221.5

Q ss_pred             eEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeeecC-CCCeeEEEECC--CCcEEEEeccCCCEEEEEcCCC
Q 012996           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLP-AEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASG  112 (451)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~  112 (451)
                      .++++  |+|+++.++.++.++..|+.|+.....   ......| ...|++++|+|  ++.+|++|+.||.|+|||+..+
T Consensus        20 ~t~l~--~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          20 TTHLS--YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCE--EETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             eEEEE--ECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            45566  999999999887653456677654332   2223334 56899999998  5789999999999999999766


Q ss_pred             ccee--------eeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          113 RLLK--------KWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       113 ~~~~--------~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      +...        .+..|.++|.+++|+++++++++++.  ++.+.+|+..+           ...+..+.+|...|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~  166 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-----------GNSLGEVSGHSQRINACH  166 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-----------CCEEEECCSCSSCEEEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc-----------cccceeeeeccccccccc
Confidence            5432        34568899999999999999887764  67899999843           456777889999999999


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      |++++. ..+++++.|+.+++||....+....+.    +...|.+++|+|+ +.+|++++.||.|++||+++.       
T Consensus       167 ~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-------  238 (325)
T d1pgua1         167 LKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-------  238 (325)
T ss_dssp             ECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-------
T ss_pred             cccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc-------
Confidence            998874 467889999999999998887666553    4677999999996 688999999999999999876       


Q ss_pred             CceeeeeeccCCcceeEEEEe---c-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC--eeEEEEEec-CceeeeccC
Q 012996          258 GMHIIGSLSDHSKAVTCLAYS---T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP--VNNILVVRR-PLYLNLGSF  330 (451)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~~---~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~-~~~l~~~s~  330 (451)
                        +.+..+.+|..++.++.|+   | +.+|++++.|+.|+|||+.+++++..+..|...  +..+++.+. +.+|+++|.
T Consensus       239 --~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  316 (325)
T d1pgua1         239 --EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL  316 (325)
T ss_dssp             --CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred             --cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC
Confidence              4567788888777655554   4 889999999999999999999999998877654  445555543 347899999


Q ss_pred             CCCcccccc
Q 012996          331 SNPHTSSRR  339 (451)
Q Consensus       331 d~~i~iw~~  339 (451)
                      ||.|++|++
T Consensus       317 dg~i~vwdl  325 (325)
T d1pgua1         317 DGTLNFYEL  325 (325)
T ss_dssp             TSCEEEEET
T ss_pred             CCEEEEEEC
Confidence            999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=264.88  Aligned_cols=302  Identities=22%  Similarity=0.380  Sum_probs=240.1

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC-CC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AE   81 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-~~   81 (451)
                      .+||||+ .||+|+|||+.+++++.++.+|   ...|.+++  |+|  .++++++.| +.+++|+............ ..
T Consensus        28 ~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~h---~~~V~~v~--~~~--~~l~s~s~D-~~~~~~~~~~~~~~~~~~~~~~   98 (342)
T d2ovrb2          28 NRIVSGS-DDNTLKVWSAVTGKCLRTLVGH---TGGVWSSQ--MRD--NIIISGSTD-RTLKVWNAETGECIHTLYGHTS   98 (342)
T ss_dssp             TEEEEEE-TTSCEEEEETTTCCEEEECCCC---SSCEEEEE--EET--TEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCCEEEEEeCC---CCCEEEEE--eCC--Cccccceec-ccccccccccccceecccccce
Confidence            3689999 9999999999999999888754   56788888  876  488888888 9999999987776555443 33


Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      .+.....  ....++.+..|+.+.+|+..+++....+..+.....  .+.+....+++++.|+.|++||...        
T Consensus        99 ~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~--------  166 (342)
T d2ovrb2          99 TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPET--------  166 (342)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGG--------
T ss_pred             eEeeeec--ccccccccccceeEEEeecccccceeeeecccccce--eeccccceeeeecCCCeEEEeeccc--------
Confidence            4444443  356778889999999999999988777765554433  3445567899999999999999843        


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCC
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (451)
                         ...+..+.+|...+..+.  +++  .++++++.||.|++||++.++.+..+. +...+.+++++  +++|++|+.||
T Consensus       167 ---~~~~~~~~~~~~~~~~~~--~~~--~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~  237 (342)
T d2ovrb2         167 ---ETCLHTLQGHTNRVYSLQ--FDG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS  237 (342)
T ss_dssp             ---TEEEEEECCCSSCEEEEE--ECS--SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred             ---ceeeEEEcCccccccccc--CCC--CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCC
Confidence               445667778877766554  455  799999999999999999999888777 66777777765  56999999999


Q ss_pred             cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEee-----cCCCCeeE
Q 012996          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR-----LAKGPVNN  315 (451)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~  315 (451)
                      .|++||+.....      ...+.....|...+.++.++ ++++++|+.||+|++||++++++++++.     +|.+.|++
T Consensus       238 ~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~  310 (342)
T d2ovrb2         238 TVKIWDIKTGQC------LQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  310 (342)
T ss_dssp             CEEEEETTTCCE------EEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             EEEEEecccccc------cccccccceeeeceeecccC-CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEE
Confidence            999999987642      12222334566777777776 5899999999999999999999998875     56778999


Q ss_pred             EEEEecCceeeeccCCCC----ccccccCC
Q 012996          316 ILVVRRPLYLNLGSFSNP----HTSSRRHG  341 (451)
Q Consensus       316 l~~s~~~~~l~~~s~d~~----i~iw~~~~  341 (451)
                      ++|+|++.+|++|+.||+    +++||++.
T Consensus       311 v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999999996    89999763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.7e-35  Score=261.80  Aligned_cols=264  Identities=17%  Similarity=0.293  Sum_probs=227.0

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----eee
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKS   77 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----~~~   77 (451)
                      .+||||+ .||+|+|||+.+++.+..+..|   ...|.+++  |+|++.++++++.+ +.+.+|+.......     ...
T Consensus        68 ~~l~sgs-~Dg~v~iWd~~~~~~~~~~~~~---~~~v~~v~--~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~  140 (340)
T d1tbga_          68 RLLVSAS-QDGKLIIWDSYTTNKVHAIPLR---SSWVMTCA--YAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELA  140 (340)
T ss_dssp             SEEEEEE-TTTEEEEEETTTTEEEEEEECS---CSCEEEEE--ECTTSSEEEEEETT-CCEEEEESSSSCSCCCEEEEEC
T ss_pred             CEEEEEE-CCCceeeeecccceeEEEEecc---cccEEeeE--eeccceeeeeeccc-ceeecccccccccccccceecc
Confidence            4789999 9999999999999999888765   46788888  99999999999998 99999997654322     112


Q ss_pred             cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  157 (451)
                      .|......... ..+..++.+..+.....+.............+...+....+.+.+.++++++.|+.|++||+++    
T Consensus       141 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~----  215 (340)
T d1tbga_         141 GHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----  215 (340)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC----
Confidence            24444444444 4456677778888999999888877777788889999999999999999999999999999954    


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCEEE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~  234 (451)
                             ...+..+.+|...|++++|+|++  .+|++++.||.|++||++.......+.   +...+.+++|+|++++|+
T Consensus       216 -------~~~~~~~~~h~~~i~~v~~~p~~--~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
T d1tbga_         216 -------GMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             -------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred             -------CcEEEEEeCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEE
Confidence                   45677788999999999999988  899999999999999999988877664   567799999999999999


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd  296 (451)
                      +|+.||.|++||+.+.         ..+..+.+|..+|++++|+| +.+|++|+.||+|+|||
T Consensus       287 ~g~~dg~i~iwd~~~~---------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         287 AGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999876         56788999999999999999 99999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-34  Score=255.16  Aligned_cols=250  Identities=15%  Similarity=0.184  Sum_probs=203.9

Q ss_pred             eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        74 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                      .....|.++|++++|+|++++|++|+.||.|++||+.+++.+..+ ..|...|++++|+|++. +++++.|+.+++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            355679999999999999999999999999999999999988887 47899999999999987 5566779999999985


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCE
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (451)
                      ...        ..........+...+.++++++++  .+++++ .++.+.+|+...   .........+.+++|+|++++
T Consensus        85 ~~~--------~~~~~~~~~~~~~~~~~~~~s~~g--~~~~~~-~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          85 GSG--------VDSSKAVANKLSSQPLGLAVSADG--DIAVAA-CYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQF  150 (299)
T ss_dssp             SSS--------SCTTSCCEEECSSCEEEEEECTTS--SCEEEE-ESSEEEEEETTE---EEEEECSSCEEEEEECTTSCE
T ss_pred             Ccc--------cccccccccccccccccccccccc--cccccc-cccccccccccc---ccccccccccccccccccccc
Confidence            421        111222334567788999999887  555544 567899999532   333445667889999999999


Q ss_pred             EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE---Eeec
Q 012996          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR---MFRL  308 (451)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~  308 (451)
                      |++|+.||.|++||+.+..        ........|...|++++|+| +.+|++++.||.|++||+.++..+.   .+..
T Consensus       151 l~~g~~dg~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  222 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGAS--------VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  222 (299)
T ss_dssp             EEEEETTSEEEEEEEETTE--------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             ccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998753        12224456889999999999 9999999999999999998876554   4567


Q ss_pred             CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                      |..+|++++|+|++.+|++|+.||.+++|++......+
T Consensus       223 h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred             cccccccccccccccceEEEcCCCEEEEEECCCCCcce
Confidence            88999999999999999999999999999988655433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=254.25  Aligned_cols=294  Identities=17%  Similarity=0.243  Sum_probs=224.2

Q ss_pred             eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996           27 LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (451)
Q Consensus        27 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  105 (451)
                      .++++|...+  ++|+    ++++++|++|+.| |+|+|||+.+++.... ..|.++|.+++|+|+ .+|++|+.||.|+
T Consensus         6 ~tL~GH~~~v--itc~----~~~~~~l~tgs~D-g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~   77 (355)
T d1nexb2           6 TTLRGHMTSV--ITCL----QFEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVR   77 (355)
T ss_dssp             EEEECCSSSC--EEEE----EEETTEEEEEETT-TEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEE
T ss_pred             EEECCcCCCc--EEEE----EECCCEEEEEeCC-CeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccc
Confidence            4566655333  4554    4578999999888 9999999998876544 458999999999985 5899999999999


Q ss_pred             EEEcCCCcceeeeccccC--CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc------------ccccceecc
Q 012996          106 MWEVASGRLLKKWHAHYR--AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR------------ASHLYLHSF  171 (451)
Q Consensus       106 iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------~~~~~~~~~  171 (451)
                      +|+....+.......+..  ......+++++.++++++.|+.|++||+.+.........            .........
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            999998887766544333  345567788999999999999999999976432211111            011112223


Q ss_pred             cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996          172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (451)
Q Consensus       172 ~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (451)
                      ..|...+..  +.+++  ++++++..|+.+++||+.+++.+.... +...+.++.++|++..+++++.|+.|++||+.+.
T Consensus       158 ~~~~~~v~~--~~~~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         158 RGHMASVRT--VSGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  233 (355)
T ss_dssp             ECCSSCEEE--EEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred             eeccccccc--ccccc--ceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc
Confidence            334444433  34455  799999999999999999998887776 6778899999999999999999999999999886


Q ss_pred             CCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEE-EEecCceeeecc
Q 012996          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL-VVRRPLYLNLGS  329 (451)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~s~~~~~l~~~s  329 (451)
                               ..+..+.+|...|++++++ +++|++|+.||.|++||+.++...  +..|...+..+. +++++.+|++| 
T Consensus       234 ---------~~~~~~~~h~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-  300 (355)
T d1nexb2         234 ---------ELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-  300 (355)
T ss_dssp             ---------CEEEEECCCSSCCCEEEEC-SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-
T ss_pred             ---------ccccccccccccccccccc-cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-
Confidence                     5577888999999999998 589999999999999999887654  455666666665 55666666555 


Q ss_pred             CCCCccccccCCCCCC
Q 012996          330 FSNPHTSSRRHGSQLP  345 (451)
Q Consensus       330 ~d~~i~iw~~~~~~~~  345 (451)
                      .||.|++||++++++.
T Consensus       301 ~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         301 SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             ETTEEEEEETTTCCBC
T ss_pred             eCCEEEEEECCCCCEE
Confidence            5899999999876654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-34  Score=254.12  Aligned_cols=270  Identities=14%  Similarity=0.171  Sum_probs=205.1

Q ss_pred             EeecCCCCCCeEEEECccCce--eeeeecCCCCCCceEEecceEee--ccCcccCCCCCCccEEEEECCCCcee------
Q 012996            5 IASSSVADTGIGCWDLESGAE--QLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKPQVE------   74 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~g~i~vw~~~~~~~~------   74 (451)
                      ||.+++....|+.||......  ...+.+|  +...|++++  |+|  ++.++++++.| |+|++||+..+...      
T Consensus        32 la~~~~~~~~i~~~~~~~~~~~~~~~~~gh--~~~~v~~v~--fsP~~~g~~lasgs~D-g~i~iWd~~~~~~~~~~~~~  106 (325)
T d1pgua1          32 IAYPCGKSAFVRCLDDGDSKVPPVVQFTGH--GSSVVTTVK--FSPIKGSQYLCSGDES-GKVIVWGWTFDKESNSVEVN  106 (325)
T ss_dssp             EEEEETTEEEEEECCSSCCSSCSEEEECTT--TTSCEEEEE--ECSSTTCCEEEEEETT-SEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEeCCCEEEEEEeCCCCCccceEEEeCC--CCCCEEEEE--EeeCCCCCEEEEEeCC-CCEEEeeecCCcceeeeecc
Confidence            444441344567777654433  3344433  235689999  998  56788888888 99999998644321      


Q ss_pred             ---eeecCCCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcEEE
Q 012996           75 ---VKSLPAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRI  148 (451)
Q Consensus        75 ---~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~v  148 (451)
                         ....+..+|.+++|+++++++++++.  ++.+.+|+..+++.+..+.+|...|.+++|+|++.+ +++++.|+.+++
T Consensus       107 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~  186 (325)
T d1pgua1         107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF  186 (325)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred             cccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccc
Confidence               12346789999999999999887654  678999999999999999999999999999998765 778999999999


Q ss_pred             eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEEC
Q 012996          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD  227 (451)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~  227 (451)
                      ||+...        ...........|...|.+++|+|++. .++++++.|+.|++||+++++.+..+. |...+..+.|+
T Consensus       187 ~d~~~~--------~~~~~~~~~~~~~~~v~~v~~~pd~~-~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         187 YQGPPF--------KFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             EETTTB--------EEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             cccccc--------ccceecccccCCCCccEEeeeccccc-eeccccccccceeeeeeccccccccccccccccccceee
Confidence            998542        11222334567888999999999643 789999999999999999999988887 55555544444


Q ss_pred             ---CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--ceeEEEEec--CCEEEEEcCCCcEEEEeC
Q 012996          228 ---PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST--GDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       228 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~l~s~~~dg~i~iwd~  297 (451)
                         |++++|++++.|+.|++||+.++         +++..+..|..  .+..+++.+  +.+|++++.||.|++||+
T Consensus       258 ~~~~dg~~l~s~s~D~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         258 LSWLDSQKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEESSSSEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeccCCCEEEEEeCCCeEEEEECCCC---------CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence               68899999999999999999886         44555554443  344555544  678999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-33  Score=243.16  Aligned_cols=278  Identities=19%  Similarity=0.334  Sum_probs=224.9

Q ss_pred             eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCE
Q 012996           26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (451)
Q Consensus        26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i  104 (451)
                      +..+..+..+..+|.|+.    +++++||+|+.| |+|+|||+.+++.... ..|...|.+++|  ++++|++|+.||.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~----~d~~~l~sgs~D-g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQ----YDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEE----CCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             EEEEeccCCCCCCEEEEE----EcCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccc
Confidence            455667778889999855    589999999998 9999999998876644 458899999987  57899999999999


Q ss_pred             EEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      ++|++..+........+....  ..+.+....++++..++.+.+|+....        ........+..|...+..+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP--------TDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSS--------SCCEEEEEECCCSSCEEEEEEE
T ss_pred             ccccccccccccccccccccc--ccccccccceeecccccceeEeecccc--------ccccccccccccccccccceec
Confidence            999999988777765554443  344556678999999999999998652        2233445567788888777664


Q ss_pred             ecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee
Q 012996          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (451)
Q Consensus       185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (451)
                      .    ..+++++.|+.+++||+++++.+..+. +...+..+.+  ++..+++++.||.|++||+++.         ..+.
T Consensus       148 ~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~---------~~~~  212 (293)
T d1p22a2         148 D----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLR  212 (293)
T ss_dssp             T----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEE
T ss_pred             c----cccccccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccc---------eeee
Confidence            4    578899999999999999999888877 5566666666  4678999999999999999886         4566


Q ss_pred             eeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC---------CceEEEeecCCCCeeEEEEEecCceeeeccCCCCc
Q 012996          264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT---------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (451)
Q Consensus       264 ~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i  334 (451)
                      ...+|...+..+... +.+|++|+.||.|++||+.+         ..++..+.+|.++|++++|  ++.+|+++|.||+|
T Consensus       213 ~~~~~~~~v~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i  289 (293)
T d1p22a2         213 VLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI  289 (293)
T ss_dssp             EECCCSSCEEEEECC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             eecccceeeeecccc-ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEE
Confidence            777888888764433 78999999999999999643         4567889999999999998  46799999999999


Q ss_pred             cccc
Q 012996          335 TSSR  338 (451)
Q Consensus       335 ~iw~  338 (451)
                      ++||
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-33  Score=248.64  Aligned_cols=300  Identities=12%  Similarity=0.150  Sum_probs=226.2

Q ss_pred             cCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce----eeeecCCCCeeEEEECCC-CcEEEEeccCCCEE
Q 012996           31 SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIY  105 (451)
Q Consensus        31 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  105 (451)
                      -..+|...|.+++  |+|++++||+++.| |+|+|||+.....    .....|..+|.+++|+|+ +.+|++|+.||.|+
T Consensus         6 ~~~~h~d~I~~l~--fsp~~~~L~s~s~D-g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIK--IIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEE--EEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEE--EeCCCCEEEEEECC-CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            3446778999999  99999999999988 9999999875442    223358899999999986 56899999999999


Q ss_pred             EEEcCCCcceeeeccccCCe-eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC--cCceeEEE
Q 012996          106 MWEVASGRLLKKWHAHYRAV-TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIV  182 (451)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~  182 (451)
                      +|++..+........+...+ ....+.+++..+++++.++.+++||++....       ..........+  ........
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD-------GVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT-------BCEEEEESCSSSSSSCCCEEE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeecccccc-------ceeeecccccccccceeeeee
Confidence            99999887777665555444 4455666888999999999999999865321       11112222222  22334555


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (451)
                      +.+.+  ..+++++.|+.|++||+..........    ....+.+..+.| ++..+++++.||.+.+|+...........
T Consensus       156 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         156 MDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EEECS--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             eeccC--CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence            66666  789999999999999998766543332    344555555555 77889999999999999987654332211


Q ss_pred             Cce------eeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996          258 GMH------IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       258 ~~~------~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~  330 (451)
                      ...      ......+|...|++++|+| +.+|++|+.||.|++||+.+++++.++..+ .++..++|+|++++|++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEE
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEc
Confidence            111      1123346778899999999 999999999999999999999999988653 45667899999999999999


Q ss_pred             CCCccccccCCCC
Q 012996          331 SNPHTSSRRHGSQ  343 (451)
Q Consensus       331 d~~i~iw~~~~~~  343 (451)
                      |+.+++|......
T Consensus       313 dd~~~~~~~~~~~  325 (342)
T d1yfqa_         313 DDTFKTNAAIDQT  325 (342)
T ss_dssp             CTHHHHCSSSCTT
T ss_pred             CCcEEEeeeeCCC
Confidence            9999999865443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-33  Score=246.19  Aligned_cols=269  Identities=14%  Similarity=0.114  Sum_probs=209.8

Q ss_pred             CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC
Q 012996           23 GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG  102 (451)
Q Consensus        23 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  102 (451)
                      .++++++++   |...|.+++  |+|    |++++.| |+|++||..+.    ...|...|.++++++++ .+++++.|+
T Consensus         3 ~~~i~~l~g---H~~~I~~l~--~s~----l~sgs~D-g~v~~Wd~~~~----~~~h~~~V~~~~~~~~~-~~~s~s~D~   67 (287)
T d1pgua2           3 DEVLKTISG---HNKGITALT--VNP----LISGSYD-GRIMEWSSSSM----HQDHSNLIVSLDNSKAQ-EYSSISWDD   67 (287)
T ss_dssp             EEEEEEECC---CSSCEEEEE--TTT----TEEEETT-SCEEETTTTEE----ECCCCSCEEEEECCSTT-CCEEEETTT
T ss_pred             cceeEEECC---CCCceEEEE--ECc----EEEEeCC-CeEEEEECCCC----CCCCCCCEEEEEecCCC-eEEEEeecc
Confidence            456677765   557888888  876    8888888 99999998753    34688899999999765 578889999


Q ss_pred             CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      ++++|++...+       ....+.++.+++++..+++++ ++.+.+|+..+           ...+..+..+ ..+  .+
T Consensus        68 ~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~-~~~--~~  125 (287)
T d1pgua2          68 TLKVNGITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFT-----------GDIIKSVRLN-SPG--SA  125 (287)
T ss_dssp             EEEETTEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTT-----------CCEEEEEECS-SCE--EE
T ss_pred             ccccccccccc-------cccceeeeeeccCCceEEEee-cccceeeeccc-----------eeeeeecccc-cee--ee
Confidence            99999975432       334577889998887766654 55788888744           2233333322 233  35


Q ss_pred             EeecCCeeEEEEeeCC-CcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996          183 IGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (451)
                      +++++  ..+++++.+ +.+++|++........+.  +...+.+++|+|++.+|++|+.||.|++||+.+..        
T Consensus       126 ~~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--------  195 (287)
T d1pgua2         126 VSLSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--------  195 (287)
T ss_dssp             EEECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------
T ss_pred             eeccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc--------
Confidence            56666  566666665 579999998766555544  56789999999999999999999999999998763        


Q ss_pred             eeeeeeccCCcceeEEEEec-C----------CEEEEEcCCCcEEEEeCCC-CceEEEeecCCCCeeEEEEEecCceeee
Q 012996          260 HIIGSLSDHSKAVTCLAYST-G----------DLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (451)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~~~-~----------~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (451)
                      .....+.+|...|.+++|+| +          .+|++|+.|++|++||+.+ ++.+..+.+|.+.|++++|+|++ .|++
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s  274 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVS  274 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEE
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEE
Confidence            33445678999999999986 3          5899999999999999976 56777888999999999999987 5888


Q ss_pred             ccCCCCcccccc
Q 012996          328 GSFSNPHTSSRR  339 (451)
Q Consensus       328 ~s~d~~i~iw~~  339 (451)
                      ++.|+.|++|++
T Consensus       275 ~g~D~~v~iW~i  286 (287)
T d1pgua2         275 SGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCeEEEEEE
Confidence            999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=250.64  Aligned_cols=292  Identities=16%  Similarity=0.160  Sum_probs=212.3

Q ss_pred             ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-------eeeecCCCCeeEEEE------CC-CCcEE
Q 012996           30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-------EVKSLPAEPIKPIAA------NS-HGTYI   95 (451)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-------~~~~~~~~~v~~~~~------~~-~~~~l   95 (451)
                      ....+|...|.+++  ++  ++++++++.| ++|++||..+...       .....+...+..+..      ++ ++.++
T Consensus         8 ~~~~~H~~~I~~v~--~~--~~~l~S~S~D-~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           8 NAGKAHDADIFSVS--AC--NSFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EESSCSSSCEEEEE--EC--SSEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             ecCCcccCccEEEE--Ee--CCEEEEEECC-CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            34456778888887  64  5789999988 9999999765432       122223333332222      21 34577


Q ss_pred             EEeccCCCEEEEEcCCCcceeee----------ccccCCeeEEEEccC-----CcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           96 AGGGQSGDIYMWEVASGRLLKKW----------HAHYRAVTCLVFSED-----GSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        96 ~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      ++++.||.|++|++........+          ..+...+..++|.++     +.++++++.||.+++|++.........
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            89999999999998655432221          234566778888764     467899999999999998543221111


Q ss_pred             hcc-------cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-------cccceeEEEE
Q 012996          161 QRA-------SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIAL  226 (451)
Q Consensus       161 ~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~i~~~~~  226 (451)
                      ...       ..........+...+.+++|++++   +|++|+.||+|++||+.+++++..+.       |...|.+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC---EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence            100       011222334566678899999875   88999999999999999998876554       5678999999


Q ss_pred             CCCCCEEEEEeCCC---cEEEEEccCCCCCCC----CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996          227 DPAEHVFYAGSRDG---SIYIAALNAESPSTS----SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (451)
Q Consensus       227 ~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~  298 (451)
                      +|++++|++|+.|+   .|++||+.++.....    .........+.+|...|++++|+| +++|++|+.|++|++||+.
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            99999999999887   499999987643211    111223344568999999999999 9999999999999999999


Q ss_pred             CCceEEEeecCCCCee----EEEEEecCceeeecc
Q 012996          299 THNIVRMFRLAKGPVN----NILVVRRPLYLNLGS  329 (451)
Q Consensus       299 ~~~~~~~~~~~~~~v~----~l~~s~~~~~l~~~s  329 (451)
                      +++++.++++|.++|.    .++|+|++..+++++
T Consensus       320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            9999999999998876    588999999988775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-31  Score=231.70  Aligned_cols=264  Identities=19%  Similarity=0.324  Sum_probs=213.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      .+||||+ .||+|+|||+.+++++.++++|   ...|.++.  |  ++++|++++.| +.|++|++..+...........
T Consensus        26 ~~l~sgs-~Dg~i~vWd~~~~~~~~~l~~H---~~~V~~v~--~--~~~~l~s~s~D-~~i~~~~~~~~~~~~~~~~~~~   96 (293)
T d1p22a2          26 QKIVSGL-RDNTIKIWDKNTLECKRILTGH---TGSVLCLQ--Y--DERVIITGSSD-STVRVWDVNTGEMLNTLIHHCE   96 (293)
T ss_dssp             SEEEEEE-SSSCEEEEESSSCCEEEEECCC---SSCEEEEE--C--CSSEEEEEETT-SCEEEEESSSCCEEEEECCCCS
T ss_pred             CEEEEEe-CCCeEEEEECCCCcEEEEEecC---CCCEeeee--c--ccceeeccccc-cccccccccccccccccccccc
Confidence            4799999 9999999999999999998764   46677765  4  78899999988 9999999998887666554333


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcc---eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      . ...+.+....++++..++.+.+|+......   ...+..|...|.++.+.  ...+++++.|+.|++||+++      
T Consensus        97 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~------  167 (293)
T d1p22a2          97 A-VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTST------  167 (293)
T ss_dssp             C-EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTT------
T ss_pred             c-cccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCC------
Confidence            3 344555667888889999999999987654   34456788888888876  45788999999999999954      


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                           ...+..+.++...+..+.+.  +  ..+++++.||.|++||+++...+..+. +...+.  .+++++.+|++|+.
T Consensus       168 -----~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~  236 (293)
T d1p22a2         168 -----CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAY  236 (293)
T ss_dssp             -----CCEEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEET
T ss_pred             -----CcEEEEEcccccccccccCC--C--CeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEEEEEcC
Confidence                 44567778888888777664  3  689999999999999999998888776 444454  35668899999999


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEe
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD  296 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd  296 (451)
                      ||.|++||+..............+..+.+|...|++++|+ +.+|++|+.||+|+|||
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d-~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc-CCEEEEEecCCEEEEeC
Confidence            9999999998765444444456678889999999999997 57899999999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-31  Score=234.78  Aligned_cols=292  Identities=17%  Similarity=0.258  Sum_probs=224.8

Q ss_pred             EECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEE
Q 012996           18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIA   96 (451)
Q Consensus        18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~   96 (451)
                      |+..+.++.+.+++|...   |.+ +  ++++|++||+++.| |+|+|||+.+++.... ..|...|.+++|+|+  +|+
T Consensus         1 W~~~~~~~~~~l~GH~~~---V~s-~--~~~~g~~l~sgs~D-g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~   71 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDH---VIT-C--LQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--III   71 (342)
T ss_dssp             HHHSCCCCCEEEECSTTS---CEE-E--EEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEE
T ss_pred             CCCCCCCcCEEECCcCCc---eEE-E--EEECCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccc
Confidence            566667777888876644   432 3  56789999999998 9999999998876544 458899999999874  899


Q ss_pred             EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC
Q 012996           97 GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (451)
Q Consensus        97 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (451)
                      +|+.|+.+++|+............+...+......  ...++.+..|+.+.+|+..+           ......+..+..
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~-----------~~~~~~~~~~~~  138 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-----------GQCLHVLMGHVA  138 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-----------CCEEEEEECCSS
T ss_pred             cceecccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeeccc-----------ccceeeeecccc
Confidence            99999999999998887777776666666666554  55788899999999999955           222223333332


Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                      ...  ......  ..+++++.|+.+++||......+..+. +...+  ..+.+++.++++|+.||.|++||++..     
T Consensus       139 ~~~--~~~~~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~-----  207 (342)
T d2ovrb2         139 AVR--CVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETG-----  207 (342)
T ss_dssp             CEE--EEEECS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTC-----
T ss_pred             cce--eecccc--ceeeeecCCCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccc-----
Confidence            222  233444  688999999999999999888877765 44444  445557889999999999999999876     


Q ss_pred             CCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCceeeeccCCCCc
Q 012996          256 SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPH  334 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s~d~~i  334 (451)
                          ..+..+.+|...+.++.++ +++|++|+.||.|++||....+....+..+.. .....++++++.++++|+.||.|
T Consensus       208 ----~~~~~~~~~~~~v~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i  282 (342)
T d2ovrb2         208 ----NCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV  282 (342)
T ss_dssp             ----CEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEE
T ss_pred             ----eeeeEecccccceeEEecC-CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEE
Confidence                5577888999999988877 58999999999999999999988888775433 22333444567799999999999


Q ss_pred             cccccCCCCCCCc
Q 012996          335 TSSRRHGSQLPPP  347 (451)
Q Consensus       335 ~iw~~~~~~~~~~  347 (451)
                      ++|++..+++...
T Consensus       283 ~iwd~~tg~~i~~  295 (342)
T d2ovrb2         283 KLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEE
Confidence            9999987665443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2e-32  Score=247.76  Aligned_cols=279  Identities=12%  Similarity=0.020  Sum_probs=215.1

Q ss_pred             eEee-ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC--CEEEEEcCCCcceeeeccc
Q 012996           45 RFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLKKWHAH  121 (451)
Q Consensus        45 ~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~  121 (451)
                      +||| +|+++|+++.  |.|++||..++.... ..|...|.+++|+|||++|++++.+.  .|++||+.+++.. .+..|
T Consensus         9 ~fSP~dG~~~a~~~~--g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~   84 (360)
T d1k32a3           9 DFSPLDGDLIAFVSR--GQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN   84 (360)
T ss_dssp             EEEECGGGCEEEEET--TEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             cccCCCCCEEEEEEC--CeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCC
Confidence            3999 9999998875  899999998877644 46889999999999999998776553  6999999877654 56789


Q ss_pred             cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe------
Q 012996          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA------  195 (451)
Q Consensus       122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~------  195 (451)
                      ...|.+++|+|++++|++++.++.+.+|++.+           ......+..|...+.+++|+|++  ++|+.+      
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~spdg--~~la~~~~~~~~  151 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-----------GKPTVIERSREAMITDFTISDNS--RFIAYGFPLKHG  151 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCEEEEEECSSSCCCCEEECTTS--CEEEEEEEECSS
T ss_pred             CceEEeeeecccccccceeccccccccccccc-----------cceeeeeecccccccchhhccce--eeeeeecccccc
Confidence            99999999999999999999999999999954           44556677888899999999998  677754      


Q ss_pred             ----eCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC--------------
Q 012996          196 ----SEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY--------------  257 (451)
Q Consensus       196 ----~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------  257 (451)
                          ..++.+++||+.+++......+...+..++|+|+|+.|++++.++.+.+|+...........              
T Consensus       152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  231 (360)
T d1k32a3         152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN  231 (360)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred             ceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccc
Confidence                34557999999998887777788889999999999999999999999999864432100000              


Q ss_pred             ------C--------------ceee----------eeeccCCcceeEEEEec----CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          258 ------G--------------MHII----------GSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       258 ------~--------------~~~~----------~~~~~~~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                            .              ...+          ..+..+...+..+.+.+    ..++++++.++.|++||+.+++..
T Consensus       232 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  311 (360)
T d1k32a3         232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT  311 (360)
T ss_dssp             GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE
T ss_pred             cceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE
Confidence                  0              0000          01111222223333322    235667778899999999887643


Q ss_pred             EEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          304 RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       304 ~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                          .|.+.|.+++|||||++|++++.||.|++|++..+..
T Consensus       312 ----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         312 ----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             ----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             ----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence                3345699999999999999999999999999886543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.8e-31  Score=240.30  Aligned_cols=269  Identities=11%  Similarity=0.098  Sum_probs=193.1

Q ss_pred             eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc------eeeeccccCCeeEEEE------cc-CCcEEEEeeC
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL------LKKWHAHYRAVTCLVF------SE-DGSFLISGSE  142 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~------~~-~~~~l~s~~~  142 (451)
                      ...|...|.++++++  +++++++.|+.|+|||..+.+.      ......|...+..+..      ++ ++.++++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            356899999999874  6899999999999999766532      2222334444333322      11 3356789999


Q ss_pred             CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC---eeEEEEeeCCCcEEEEEcCCCce--------
Q 012996          143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV---SATIVSASEDRTCKVWSLLKGRL--------  211 (451)
Q Consensus       143 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~--------  211 (451)
                      ||.|++|++............. ........+...+..+++.+++.   +.++++++.||.+++|++.....        
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEK-LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEE-ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCcEEEEEccCCCceeeeeccc-cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999986532211111000 01112233556677788776542   37899999999999999853210        


Q ss_pred             -------eeee----ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996          212 -------LRNI----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (451)
Q Consensus       212 -------~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  279 (451)
                             ....    .+...+.+++|+|++ +|++|+.||.|++||+.+..+..   .......+.+|..+|++++|+| 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY---NFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE---EEECCC---CCCCCEEEEEECSS
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc---ccccccccccccceEEEcccccc
Confidence                   0111    134568899999997 88999999999999998764211   1122345678999999999999 


Q ss_pred             CCEEEEEcCCCc---EEEEeCCCCceEEEee-------------cCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996          280 GDLLISGSEDGM---VRVWDPITHNIVRMFR-------------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       280 ~~~l~s~~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~  343 (451)
                      +.+|++|+.|++   |++||+.+++++..+.             +|.+.|++|+|+|++++|+++|.|++|++||+..++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            999999999875   9999999999888775             799999999999999999999999999999999887


Q ss_pred             CCCccccc
Q 012996          344 LPPPLDKY  351 (451)
Q Consensus       344 ~~~~~~~~  351 (451)
                      +...+..+
T Consensus       323 ~~~~l~gH  330 (393)
T d1sq9a_         323 RITTLNMH  330 (393)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCc
Confidence            76655443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-30  Score=226.03  Aligned_cols=250  Identities=20%  Similarity=0.236  Sum_probs=198.6

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCee
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK   84 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~   84 (451)
                      |+||+ .||+|++||+.++.        ..|...|.++.  ++++ ..+++++.| +++++|+.....      ....+.
T Consensus        24 l~sgs-~Dg~v~~Wd~~~~~--------~~h~~~V~~~~--~~~~-~~~~s~s~D-~~v~~w~~~~~~------~~~~~~   84 (287)
T d1pgua2          24 LISGS-YDGRIMEWSSSSMH--------QDHSNLIVSLD--NSKA-QEYSSISWD-DTLKVNGITKHE------FGSQPK   84 (287)
T ss_dssp             TEEEE-TTSCEEETTTTEEE--------CCCCSCEEEEE--CCST-TCCEEEETT-TEEEETTEEEEE------CSSCEE
T ss_pred             EEEEe-CCCeEEEEECCCCC--------CCCCCCEEEEE--ecCC-CeEEEEeec-cccccccccccc------ccccee
Confidence            68999 99999999987643        24667888888  8765 567888887 999999964322      345678


Q ss_pred             EEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC-cEEEeeCcchhhhhhhhcc
Q 012996           85 PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~  163 (451)
                      ++.+++++..+++++ ++.+.+|+..+++.+..+..+ ..  ..++++++..+++++.++ .+++|++...         
T Consensus        85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~---------  151 (287)
T d1pgua2          85 VASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDL---------  151 (287)
T ss_dssp             EEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEE---------
T ss_pred             eeeeccCCceEEEee-cccceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeecccc---------
Confidence            899999988887755 557899999998888777643 33  345677788888887765 6999998541         


Q ss_pred             cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee--ecccceeEEEECCC----------CC
Q 012996          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI--VFPSVIDAIALDPA----------EH  231 (451)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~i~~~~~~~~----------~~  231 (451)
                       .........|...+++++|+|++  .+|++|+.||.|++||+.++......  .|...|.+++|+|.          +.
T Consensus       152 -~~~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         152 -EVSFDLKTPLRAKPSYISISPSE--TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             -EEEEECSSCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             -ceeeeeeeccCCceeEEEeccCc--cccccccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence             11222334578899999999998  89999999999999999988776543  27888999999874          46


Q ss_pred             EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~  297 (451)
                      +|++|+.|+.|++||+....        ..+..+.+|...|++++|+|+..|++++.||.|++|++
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~--------~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eeEeecCCCeEEEEECCCCC--------eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            89999999999999997753        45677889999999999999667999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.5e-30  Score=228.19  Aligned_cols=253  Identities=13%  Similarity=0.020  Sum_probs=189.5

Q ss_pred             eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee---eccccCCeeEEEEccC-CcEEEEeeCCCcEEEee
Q 012996           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWS  150 (451)
Q Consensus        75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd  150 (451)
                      ....|.+.|++|+|+|++++||+|+.||+|+|||+..+.....   ..+|.++|.+++|+|+ +.+|++|+.||.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            4456889999999999999999999999999999977654333   3469999999999986 56899999999999999


Q ss_pred             CcchhhhhhhhcccccceecccCCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-------ccccee
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVID  222 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~i~  222 (451)
                      +..           .........+. .......+.++.  ..+++++.++.+++||++.+.......       ......
T Consensus        86 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          86 LIG-----------SPSFQALTNNEANLGICRICKYGD--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             SSS-----------SSSEEECBSCCCCSCEEEEEEETT--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             ccc-----------cccccccccccccccccccccccc--ccccccccccccceeeccccccceeeecccccccccceee
Confidence            954           22222233333 333344455555  789999999999999987654333222       223455


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCC
Q 012996          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITH  300 (451)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~  300 (451)
                      ...+.+.+..+++++.|+.|++||+......      ........+...+.+..+.+  +..+++++.||.+.+|+....
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTC------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCccc------ceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence            6677888999999999999999999876532      11223334555667767666  889999999999999987643


Q ss_pred             ceE---------E------EeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996          301 NIV---------R------MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       301 ~~~---------~------~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~  346 (451)
                      ...         .      ....|...|++++|+|++++|++|+.||.|++||....+...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence            221         1      122456689999999999999999999999999998765433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.1e-29  Score=235.09  Aligned_cols=330  Identities=11%  Similarity=-0.030  Sum_probs=227.8

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--e---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--S---   77 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~---   77 (451)
                      +++++.+ .||+|+|||+.+++.+.++..+.    .+..++  |+|||+++++++.| ++|++||+.+++....  .   
T Consensus        33 ~~~V~~~-~dg~v~vwD~~t~~~~~~l~~g~----~~~~va--fSPDGk~l~~~~~d-~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          33 LFSVTLR-DAGQIALVDGDSKKIVKVIDTGY----AVHISR--MSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEEEET-TTTEEEEEETTTCSEEEEEECCS----SEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEEc-CCCEEEEEECCCCcEEEEEeCCC----CeeEEE--ECCCCCEEEEEeCC-CCEEEEEccCCceeEEEEEeCC
Confidence            5678888 99999999999999999998653    466777  99999999999887 9999999988764321  1   


Q ss_pred             -cCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcch
Q 012996           78 -LPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTV  154 (451)
Q Consensus        78 -~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~  154 (451)
                       .|...+.+++|+|||++++++ ..++.+.+||..++.++..+..|...+....+.+++.. .+.++.|+...++.....
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence             234456677788999987555 57899999999999988887766655554555444432 233334444333332211


Q ss_pred             hhhhhhh-cccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCC
Q 012996          155 FEECESQ-RASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPA  229 (451)
Q Consensus       155 ~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~  229 (451)
                      ....... ............+...+..+.+++++  +++++ ...+..+.+++..+++.......   ........+.+.
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP  262 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTS--CEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCC--cEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecC
Confidence            0000000 01111222334567778899999988  55554 45677799999999988877752   222223333322


Q ss_pred             C--CEE-EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE-------EcCCCcEEEEeCC
Q 012996          230 E--HVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS-------GSEDGMVRVWDPI  298 (451)
Q Consensus       230 ~--~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s-------~~~dg~i~iwd~~  298 (451)
                      +  ... +....++.+.+|+......  ....++....+.+|...+..++|+| +.+|++       ++.|++|+|||+.
T Consensus       263 ~~~~~~~~~~~~d~~v~~~~~~~~~~--~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         263 KYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             TTEEEEEEECTTTCEEEEEECCTTTC--TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             CCCceEEeccCCCceEEEeecccccc--ccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence            2  222 2334678888888766532  2233466778999999999999999 999994       5568899999999


Q ss_pred             CCceEEEee---------cCCCCeeEEEEEecCceeee-----ccCCCCccccccCCCCC
Q 012996          299 THNIVRMFR---------LAKGPVNNILVVRRPLYLNL-----GSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       299 ~~~~~~~~~---------~~~~~v~~l~~s~~~~~l~~-----~s~d~~i~iw~~~~~~~  344 (451)
                      +++...++.         .|...|.+++|||||++++.     ++.+|.|++||..+.+.
T Consensus       341 t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         341 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             CTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             CCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence            998776653         34567999999999997732     35688899999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=2.7e-29  Score=226.98  Aligned_cols=274  Identities=11%  Similarity=0.059  Sum_probs=213.3

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC-ccEEEEECCCCceeeeecCCCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS-GSILYWSWSKPQVEVKSLPAEP   82 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-g~i~vw~~~~~~~~~~~~~~~~   82 (451)
                      ++|+++  +|.|.+||+.++.....     .|...+.++.  |+|+|+.|++++.++ ..|++||..++.......|...
T Consensus        17 ~~a~~~--~g~v~v~d~~~~~~~~~-----~~~~~v~~~~--~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~   87 (360)
T d1k32a3          17 LIAFVS--RGQAFIQDVSGTYVLKV-----PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN   87 (360)
T ss_dssp             CEEEEE--TTEEEEECTTSSBEEEC-----SCCSCEEEEE--ECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred             EEEEEE--CCeEEEEECCCCcEEEc-----cCCCCEEEEE--ECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce
Confidence            466666  68999999988776542     3567789998  999999999887664 4799999999988887889999


Q ss_pred             eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee----------CCCcEEEeeCc
Q 012996           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS----------EDGCVRIWSLL  152 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~  152 (451)
                      |.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.++          .++.+++|++.
T Consensus        88 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~  167 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  167 (360)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             EEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccc
Confidence            99999999999999999999999999999999999999999999999999999998543          45568999985


Q ss_pred             chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee-------eeee-c-------
Q 012996          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-------RNIV-F-------  217 (451)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~-~-------  217 (451)
                      +.            ....+..|...+..++|++++  +.|++++.++.+.+||.......       ..+. +       
T Consensus       168 ~~------------~~~~~~~~~~~~~~~~~spdg--~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (360)
T d1k32a3         168 GR------------KIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT  233 (360)
T ss_dssp             TT------------EEEECSCSSSBEEEEEECTTS--CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred             cC------------ceeeecccccccccccccCCC--CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccc
Confidence            41            223345577788899999998  89999999999999986543211       1110 0       


Q ss_pred             -----------------------------ccceeEEEECCCC-------------CEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          218 -----------------------------PSVIDAIALDPAE-------------HVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       218 -----------------------------~~~i~~~~~~~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                                                   ......+...+++             .++++++.++.|++||+.+.+    
T Consensus       234 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----  309 (360)
T d1k32a3         234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----  309 (360)
T ss_dssp             GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC----
T ss_pred             eECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe----
Confidence                                         0111223333222             234455667899999988753    


Q ss_pred             CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe
Q 012996          256 SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV  313 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  313 (451)
                               ...|...|.+++|+| |++|++++.||.|++||+.+++...++..+..|+
T Consensus       310 ---------~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         310 ---------VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             ---------EEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             ---------EEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence                     223456799999999 9999999999999999999999888887666554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.1e-28  Score=225.85  Aligned_cols=317  Identities=10%  Similarity=-0.005  Sum_probs=217.9

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee--eee---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKS---   77 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~--~~~---   77 (451)
                      +++++.+ .||+|.|||..+++.+..+..+.    .+..++  |+|||+++++++.| |.|.+||+.++...  ...   
T Consensus        33 ~~~v~~~-d~g~v~v~D~~t~~v~~~~~~g~----~~~~v~--fSpDG~~l~~~s~d-g~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          33 LFSVTLR-DAGQIALIDGSTYEIKTVLDTGY----AVHISR--LSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEEEET-TTTEEEEEETTTCCEEEEEECSS----CEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEECC
T ss_pred             EEEEEEc-CCCEEEEEECCCCcEEEEEeCCC----CeeEEE--ECCCCCEEEEEcCC-CCEEEEEeeCCCceEEEEEecC
Confidence            5678888 99999999999999999997643    466677  99999999999887 99999999876532  111   


Q ss_pred             -cCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccc-----------cCCeeEEEEccCCcEE-EEeeCC
Q 012996           78 -LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAH-----------YRAVTCLVFSEDGSFL-ISGSED  143 (451)
Q Consensus        78 -~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~s~~~d  143 (451)
                       .|.+.+.+..|+|||++| +++..++.|++||..+++++..+..|           ......+.++|++..+ ++...+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence             233455666778899986 67778999999999999988776543           3456678899988775 456667


Q ss_pred             CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCCCceeeeeec-----
Q 012996          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLLRNIVF-----  217 (451)
Q Consensus       144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-----  217 (451)
                      +.|.+||..+.         ....+..+ .+...+.+++|+|++  +++++++ .++.+.++|..+++....+..     
T Consensus       185 ~~i~~~d~~~~---------~~~~~~~i-~~g~~~~~~~~spdg--~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~  252 (432)
T d1qksa2         185 GKILLVDYTDL---------NNLKTTEI-SAERFLHDGGLDGSH--RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  252 (432)
T ss_dssp             TEEEEEETTCS---------SEEEEEEE-ECCSSEEEEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CeEEEEEccCC---------CcceEEEE-cccCccccceECCCC--CEEEEeccccceEEEeecccceEEEEeccCcccc
Confidence            89999998542         11112222 245567889999998  6655555 566899999998887766642     


Q ss_pred             -ccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeee-------------------------ccCCc
Q 012996          218 -PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSL-------------------------SDHSK  270 (451)
Q Consensus       218 -~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------------------------~~~~~  270 (451)
                       ........+...+....+.. .++.|.+|+.........  .+......                         ..|..
T Consensus       253 ~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~--~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~  330 (432)
T d1qksa2         253 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN--AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE  330 (432)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT--BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             ccCcccceecCCCCceecccccCCceEEeccccccccccc--ccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCC
Confidence             23334444444444444443 366788887654321110  00111111                         11222


Q ss_pred             ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc-----CCCCccccccCCCCC
Q 012996          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS-----FSNPHTSSRRHGSQL  344 (451)
Q Consensus       271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-----~d~~i~iw~~~~~~~  344 (451)
                      ...++++ | +..|++++.|+.+++|++.++..+   ..|...|.+++|||||++++.+.     .+|.|.|||..+.++
T Consensus       331 ~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         331 ISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             HHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             eeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            2334444 6 788888999999999987655333   35667899999999999885443     568899999887654


Q ss_pred             C
Q 012996          345 P  345 (451)
Q Consensus       345 ~  345 (451)
                      .
T Consensus       407 ~  407 (432)
T d1qksa2         407 K  407 (432)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=5.7e-25  Score=193.11  Aligned_cols=273  Identities=13%  Similarity=0.130  Sum_probs=212.0

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v   83 (451)
                      +.++++ .|++|.|||+.+++.+.++....    ....++  |+|+|+++++++..++.|.+||+.+++..........+
T Consensus         4 ~yV~~~-~~~~v~v~D~~t~~~~~~i~~g~----~p~~va--~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~   76 (301)
T d1l0qa2           4 AYIANS-ESDNISVIDVTSNKVTATIPVGS----NPMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP   76 (301)
T ss_dssp             EEEEET-TTTEEEEEETTTTEEEEEEECSS----SEEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEEC-CCCEEEEEECCCCeEEEEEECCC----CceEEE--EeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc
Confidence            455667 89999999999999999887542    345566  99999998766554499999999998877665555678


Q ss_pred             eEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhhhh
Q 012996           84 KPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQ  161 (451)
Q Consensus        84 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~  161 (451)
                      ..++|++++.+++ ++..++.+.+|+..+++....+..+ ..+.++.|+|++..++ ++..++.+.+|+..+        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~--------  147 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT--------  147 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------
T ss_pred             cccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccc--------
Confidence            9999999998665 4566778999999999888887644 5678899999998775 555678899999854        


Q ss_pred             cccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC--
Q 012996          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR--  238 (451)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  238 (451)
                         ......+. +...+..+++++++  ..+++++ .++.+.+|+...............+..+++++++..+++++.  
T Consensus       148 ---~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         148 ---KAVINTVS-VGRSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             ---TEEEEEEE-CCSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             ---cceeeecc-cCCCceEEEeeccc--cceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccc
Confidence               33333333 33456788888887  5555555 456788888888888888878888899999999998877654  


Q ss_pred             -CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE-EEEcCCCcEEEEeCCCCceEEEeec
Q 012996          239 -DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       239 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~  308 (451)
                       ++.|++||+.+.         +.+..+.. ...+.+++|+| +++| ++++.|+.|++||+.+++++.++..
T Consensus       222 ~~~~v~v~D~~t~---------~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         222 YFNTVSMIDTGTN---------KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             SCCEEEEEETTTT---------EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eeeeeeeeecCCC---------eEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence             367999999886         34444443 45689999999 8876 6778899999999999999998864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1e-25  Score=197.84  Aligned_cols=264  Identities=14%  Similarity=0.127  Sum_probs=206.9

Q ss_pred             CCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc
Q 012996           57 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS  135 (451)
Q Consensus        57 ~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  135 (451)
                      +.++++|.+||..+++..........+..++|+|||++| ++++.++.|++||+.+++.+..+..+. .+..+.|++++.
T Consensus         8 ~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~   86 (301)
T d1l0qa2           8 NSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGK   86 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSS
T ss_pred             ECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccc
Confidence            333499999999999887766666778999999999987 466778999999999999999887765 468899999988


Q ss_pred             EEE-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996          136 FLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (451)
Q Consensus       136 ~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  214 (451)
                      .++ ++..++.+.+|+..+           ......+. +.....++.+++++. ..++++..++.+.+|+..++.....
T Consensus        87 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          87 QVYVTNMASSTLSVIDTTS-----------NTVAGTVK-TGKSPLGLALSPDGK-KLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEEETTTTEEEEEETTT-----------TEEEEEEE-CSSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccceeeeccccc-----------ceeeeecc-ccccceEEEeecCCC-eeeeeeccccceeeeeccccceeee
Confidence            665 455677899999854           33344444 344567888999884 4556777788999999999999999


Q ss_pred             eecccceeEEEECCCCCEEEEEeCC-CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc---CC
Q 012996          215 IVFPSVIDAIALDPAEHVFYAGSRD-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS---ED  289 (451)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~---~d  289 (451)
                      +.....+..++++|++..+++++.+ +.+.+|+....         ....... +...+..+++++ +..++.++   .+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         154 VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             cccCCCceEEEeeccccceeeecccccccccccccce---------eeeeccc-ccCCcceeecccccccccccccccee
Confidence            8888889999999999998888766 45666666554         3333333 345678899999 77776554   34


Q ss_pred             CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccccCCCCCC
Q 012996          290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~~~~~~~~  345 (451)
                      +.|.+||+.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|.+||..+.++.
T Consensus       224 ~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            68999999999999988764 467999999999987 67788999999998876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=9.5e-25  Score=194.79  Aligned_cols=288  Identities=13%  Similarity=0.035  Sum_probs=203.2

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP---   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~---   79 (451)
                      .+|++++ .|++|.|||+.+++.+.++..+.. ...+..++  |+|||+++++++..++.|.+||+.+++.......   
T Consensus         2 ~~~vt~~-~d~~v~v~D~~s~~~~~~i~~~~~-~~~~~~i~--~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPA-RPDKLVVIDTEKMAVDKVITIADA-GPTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECTTC-TTCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             eEEEEEc-CCCEEEEEECCCCeEEEEEECCCC-CCCccEEE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC
Confidence            5788999 999999999999999998876432 23344556  9999999865544449999999999887654322   


Q ss_pred             ---CCCeeEEEECCCCcEEEEec------------cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC
Q 012996           80 ---AEPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG  144 (451)
Q Consensus        80 ---~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  144 (451)
                         ...+..++|+|++++++++.            .++.+.+||..+++....+.. ...+.+++|+|+++++++++.+ 
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-  155 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD-  155 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS-
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC-
Confidence               23466899999999998775            356789999999988888764 4567899999999999998654 


Q ss_pred             cEEEeeCcchhhhhhhhcccc----------cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996          145 CVRIWSLLTVFEECESQRASH----------LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (451)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  214 (451)
                       +.+||..+............          ........+....................++.++.+.+||..++.....
T Consensus       156 -~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         156 -LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             -EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             -cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence             77898865422111000000          0000000111111111111111112233344566799999998876543


Q ss_pred             e--ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc
Q 012996          215 I--VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM  291 (451)
Q Consensus       215 ~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~  291 (451)
                      .  .+...+..+.++|++.+++++  ++.|++||+.+.         ..+..+ .+...+.+++|+| |++|++++.||+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~---------~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------ASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------EEEEEE-ECSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             EecCCCcceEEEEecccceEEEEc--cccEEEEECCCC---------cEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            3  256778889999999998876  488999999986         344444 3567889999999 999999999999


Q ss_pred             EEEEeCCCCceEEEeecC
Q 012996          292 VRVWDPITHNIVRMFRLA  309 (451)
Q Consensus       292 i~iwd~~~~~~~~~~~~~  309 (451)
                      |++||..+++.+.+++.+
T Consensus       303 i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         303 LAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEETTTCCEEEEEECG
T ss_pred             EEEEECCCCcEEEEEECC
Confidence            999999999999998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.6e-24  Score=191.88  Aligned_cols=266  Identities=11%  Similarity=0.046  Sum_probs=195.9

Q ss_pred             CcccCCCCCCccEEEEECCCCceeeeec---CCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeecccc----
Q 012996           51 QLREQPSASSGSILYWSWSKPQVEVKSL---PAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHY----  122 (451)
Q Consensus        51 ~~l~~~~~d~g~i~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~----  122 (451)
                      .++++++.| ++|.|||+.+.+......   +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.    
T Consensus         2 ~~~vt~~~d-~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCC-CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            357777777 999999999988764432   34568899999999987 566788999999999999988876543    


Q ss_pred             -CCeeEEEEccCCcEEEEeeC------------CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996          123 -RAVTCLVFSEDGSFLISGSE------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (451)
Q Consensus       123 -~~v~~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (451)
                       ..+..++|+|++++++++..            ++.+.+||..+           ......+. +...+.++++++++  
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~~~~-~~~~~~~~~~s~dg--  146 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-----------LSRRKAFE-APRQITMLAWARDG--  146 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-----------TEEEEEEE-CCSSCCCEEECTTS--
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC-----------CeEEEecc-ccCCceEEEEcCCC--
Confidence             34568999999999988764            45677788744           22333333 34567789999998  


Q ss_pred             eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE------------------------EEEeCCCcEEEE
Q 012996          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF------------------------YAGSRDGSIYIA  245 (451)
Q Consensus       190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l------------------------~~~~~dg~i~i~  245 (451)
                      .++++++.  .+.+||..+++....+..........+.|++..+                        ..+..++.+.+|
T Consensus       147 ~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         147 SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence            78888764  4788999999888777643322222333332221                        112223457777


Q ss_pred             EccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCce
Q 012996          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY  324 (451)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~  324 (451)
                      +.....        .....+..+...+..+.++| +.+++++  ++.|++||+.+++.+..+.. ...+.+++|+|||++
T Consensus       225 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         225 DLETGE--------MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGST  293 (337)
T ss_dssp             ETTTCC--------EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred             EcCCCc--------EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC-CCCEEEEEECCCCCE
Confidence            776653        23344556777888899999 7777655  58899999999999998864 567899999999999


Q ss_pred             eeeccCCCCccccccCCCCC
Q 012996          325 LNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       325 l~~~s~d~~i~iw~~~~~~~  344 (451)
                      |++++.|+.|++||....+.
T Consensus       294 l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         294 VWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCE
T ss_pred             EEEEeCCCcEEEEECCCCcE
Confidence            99999999999999987543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.1e-24  Score=195.25  Aligned_cols=274  Identities=10%  Similarity=0.001  Sum_probs=198.7

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeee--ecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeecccc
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHY  122 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~  122 (451)
                      |+++++++++++.+ +.|.+||+.+++....  ..+...+.+++|+|||+++ +++..++.|.+||+.+++.+..+....
T Consensus         4 ~~~~~~~l~~~~~~-~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_           4 LKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             CCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCCCcEEEEEcCC-CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence            89999999999998 9999999999987643  3346678999999999987 555678999999999998887664322


Q ss_pred             ------CCeeEEEEccCCcEEEEee------------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          123 ------RAVTCLVFSEDGSFLISGS------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       123 ------~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                            ..+..++|+|||+++++++            .++.+.+|+..++..        ...+.. ......+..+.++
T Consensus        83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~  153 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRT-FPMPRQVYLMRAA  153 (346)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEE-EECCSSCCCEEEC
T ss_pred             cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee--------eeEEEe-eeccCceEEEEec
Confidence                  3466899999999988775            366788888755221        001111 1112334445555


Q ss_pred             ecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE--------------------------eC
Q 012996          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG--------------------------SR  238 (451)
Q Consensus       185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--------------------------~~  238 (451)
                      +++  ..+++   ++.+.+|++.+++.+..+........+.++|++..++..                          ..
T Consensus       154 ~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
T d1jmxb_         154 DDG--SLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  228 (346)
T ss_dssp             TTS--CEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCC--EEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence            554  44443   256899999999988887765555666666665544322                          23


Q ss_pred             CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEE
Q 012996          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL  317 (451)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  317 (451)
                      ++.+.+|++....        ........|...+..+.+++ +.+++.+. ++.|.+||..+++.+..+.. ...+.+++
T Consensus       229 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~-~~~~~~va  298 (346)
T d1jmxb_         229 LYGYLSVDLKTGK--------THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVA  298 (346)
T ss_dssp             EEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEE
T ss_pred             CceEEEEECCCCc--------eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC-CCCEEEEE
Confidence            3345556665543        33445566788888999998 77777665 45799999999999988864 46799999


Q ss_pred             EEecCceeeeccCCCCccccccCCCCC
Q 012996          318 VVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       318 ~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      |+|||++|++++.||.|++||..+.+.
T Consensus       299 ~s~DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         299 FDKKGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             ECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             EcCCCCEEEEEeCCCcEEEEECccCCE
Confidence            999999999999999999999886543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=5.5e-24  Score=196.37  Aligned_cols=280  Identities=10%  Similarity=-0.012  Sum_probs=191.3

Q ss_pred             EeeccC-cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-----c
Q 012996           46 FLASSQ-LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-----H  119 (451)
Q Consensus        46 ~~~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~  119 (451)
                      +..+.+ +++++..+||.|+|||..+++..........+..++|||||++|++++.||.|++||+.+++.....     .
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            344433 3334444459999999999988766655678999999999999999999999999999998754332     3


Q ss_pred             cccCCeeEEEEccCCcEEEE-eeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC-----------ceeEEEEeecC
Q 012996          120 AHYRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-----------RITDIVIGYGG  187 (451)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~~i~~~~~~  187 (451)
                      +|.+.+.+++|+|||+++++ +..++.+.+||..+.           ........|..           ....+..++++
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~  174 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  174 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-----------ceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence            56677778888999998754 457899999998552           23333333333           33444455554


Q ss_pred             CeeEEEEeeCCCcEEEEEcCCCce--eeeeecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeee
Q 012996          188 VSATIVSASEDRTCKVWSLLKGRL--LRNIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       188 ~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                      . ..+++....+.+.+++......  +..+.+...+..+.++|++++++++.. +..+.+++..+..         .+..
T Consensus       175 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~---------~~~~  244 (426)
T d1hzua2         175 P-EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR---------LSAL  244 (426)
T ss_dssp             S-EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE---------EEEE
T ss_pred             C-EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc---------EEEE
Confidence            2 2333333445555666555442  234456778899999999999888764 5578899988763         2222


Q ss_pred             e--ccCCcceeEEEEec-CC---EEEEEcCCCcEEEEeCCC-------CceEEEeecCCCCeeEEEEEecCceee-----
Q 012996          265 L--SDHSKAVTCLAYST-GD---LLISGSEDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLN-----  326 (451)
Q Consensus       265 ~--~~~~~~v~~~~~~~-~~---~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~-----  326 (451)
                      .  ..+........+.+ +.   ..++.+.|+.+.+|+...       ++...++.+|...+..++|+||+++|+     
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         245 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             EECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTT
T ss_pred             eccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecC
Confidence            2  12222333333333 22   223345677888877543       478889999999999999999999999     


Q ss_pred             --eccCCCCccccccCCCCCCC
Q 012996          327 --LGSFSNPHTSSRRHGSQLPP  346 (451)
Q Consensus       327 --~~s~d~~i~iw~~~~~~~~~  346 (451)
                        +++.|+++++|++.......
T Consensus       325 ~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         325 NPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             CSSHHHHTCEEEEETTCTTSCC
T ss_pred             CCCcccCCEEEEEECCCCCcCe
Confidence              45678999999998766543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5.7e-24  Score=195.87  Aligned_cols=281  Identities=11%  Similarity=-0.004  Sum_probs=187.3

Q ss_pred             cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce--ee---eccccCCee
Q 012996           52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KK---WHAHYRAVT  126 (451)
Q Consensus        52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~---~~~~~~~v~  126 (451)
                      ++++.-.++|+|.|||..++++.........+..++|||||+++++++.||.|.+||+.+++..  ..   ...|.+.+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            3334444449999999999998877655578999999999999999999999999999887643  22   235666677


Q ss_pred             EEEEccCCcEE-EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996          127 CLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (451)
Q Consensus       127 ~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd  205 (451)
                      +..|+|||++| ++++.++.|++||..++...................+......+.+++++. .++++...++.|.+||
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIVNVKETGKILLVD  191 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEEEETTTTEEEEEE
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC-EEEEEEccCCeEEEEE
Confidence            77888999986 678889999999996632211111000000011122445566788888874 4567778889999999


Q ss_pred             cCCCcee--eeeecccceeEEEECCCCCEEEEEeCC-CcEEEEEccCCCCCCC---------CC----------C-----
Q 012996          206 LLKGRLL--RNIVFPSVIDAIALDPAEHVFYAGSRD-GSIYIAALNAESPSTS---------SY----------G-----  258 (451)
Q Consensus       206 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~---------~~----------~-----  258 (451)
                      ..+++..  ..+.....+..++|+|+++++++++.+ +.+.++|.........         ..          .     
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  271 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT  271 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecc
Confidence            9887654  345566778999999999988887654 4788888765432100         00          0     


Q ss_pred             -------ceee----eeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceee
Q 012996          259 -------MHII----GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLN  326 (451)
Q Consensus       259 -------~~~~----~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  326 (451)
                             ....    .....|...+....++| +..+++++.++..++|+..+..      .|......+++ ||++.|+
T Consensus       272 ~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pDg~~la  344 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FDIKAMT  344 (432)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EEGGGCC
T ss_pred             cccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-Eechhhc
Confidence                   0000    00112223455555666 5566666666666666543321      22222344554 9999999


Q ss_pred             eccCCCCccccccC
Q 012996          327 LGSFSNPHTSSRRH  340 (451)
Q Consensus       327 ~~s~d~~i~iw~~~  340 (451)
                      +++.|+.+++|+..
T Consensus       345 ~~s~d~~~k~w~~~  358 (432)
T d1qksa2         345 GDGSDPEFKTLPIA  358 (432)
T ss_dssp             CSSSCCCEEEECHH
T ss_pred             ccccCCceEecccc
Confidence            99999999999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=2.2e-22  Score=179.96  Aligned_cols=291  Identities=13%  Similarity=0.099  Sum_probs=199.0

Q ss_pred             EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC---
Q 012996            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP---   79 (451)
Q Consensus         3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~---   79 (451)
                      .+|++++ .|++|.|||+.+++.+.+++...+  .....++  |+|||+++++++..++.|.+||+.+++.......   
T Consensus         9 ~~l~~~~-~~~~v~v~D~~t~~~~~t~~~~~~--~~p~~l~--~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~   83 (346)
T d1jmxb_           9 EYMIVTN-YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   83 (346)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECSSC--CSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             cEEEEEc-CCCEEEEEECCCCCEEEEEEcCCC--CCcceEE--ECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence            5789999 999999999999999988864321  2334555  9999999876665559999999998877644332   


Q ss_pred             ----CCCeeEEEECCCCcEEEEec------------cCCCEEEEEcCCCcceeeeccc--cCCeeEEEEccCCcEEEEee
Q 012996           80 ----AEPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSEDGSFLISGS  141 (451)
Q Consensus        80 ----~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~  141 (451)
                          ...+..++|+|||+++++++            .++.+.+|+..+++....+..+  ...+..+.+++++..++++ 
T Consensus        84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  162 (346)
T d1jmxb_          84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG-  162 (346)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES-
T ss_pred             ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC-
Confidence                12467899999999988764            4677999999888776655433  3456667788787766553 


Q ss_pred             CCCcEEEeeCcchhhhhhhhccc----------ccceecccCCcCceeEE--EEeecCCeeEEEEeeCCCcEEEEEcCCC
Q 012996          142 EDGCVRIWSLLTVFEECESQRAS----------HLYLHSFTGHTLRITDI--VIGYGGVSATIVSASEDRTCKVWSLLKG  209 (451)
Q Consensus       142 ~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~i--~~~~~~~~~~l~s~~~d~~i~iwd~~~~  209 (451)
                        +.+.+|++.+...........          ...+.........+...  ..........+.++..++.+.+||+.++
T Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         163 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             --CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence              468899986532211100000          00000001111111111  1111111145566677788999999988


Q ss_pred             ceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE
Q 012996          210 RLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (451)
Q Consensus       210 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~  286 (451)
                      .......  +...+..+.+++++.+++.+. ++.|.+||..+.         +.+..+. +...+.+++|+| +++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~---------~~~~~~~-~~~~~~~va~s~DG~~l~v~  309 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---------KLIKAAN-LDHTYYCVAFDKKGDKLYLG  309 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---------EEEEEEE-CSSCCCEEEECSSSSCEEEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC---------cEEEEEc-CCCCEEEEEEcCCCCEEEEE
Confidence            7665543  667788899999888877665 457999999886         3344443 456799999999 9999999


Q ss_pred             cCCCcEEEEeCCCCceEEEeecCCCC
Q 012996          287 SEDGMVRVWDPITHNIVRMFRLAKGP  312 (451)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (451)
                      +.||.|++||+.+++.+.+++.+.++
T Consensus       310 ~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         310 GTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             eCCCcEEEEECccCCEEEEEECCCCC
Confidence            99999999999999999999976553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8.1e-20  Score=162.26  Aligned_cols=292  Identities=10%  Similarity=0.088  Sum_probs=189.8

Q ss_pred             Ce-EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----e
Q 012996            1 ME-LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----V   75 (451)
Q Consensus         1 ~e-~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~   75 (451)
                      |+ .++++++ .|++|+|||+.+...+..++.. .+...+..++  |+|||++|++++.+++.|.+|++......    .
T Consensus         2 ~~~~v~v~~~-~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la--~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~   77 (333)
T d1ri6a_           2 LKQTVYIASP-ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA   77 (333)
T ss_dssp             CEEEEEEEEG-GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEECC-CCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEE--EeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee
Confidence            55 4556777 8999999998765443333311 1334455666  99999999877776699999998755422    2


Q ss_pred             eecCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceee--eccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeC
Q 012996           76 KSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKK--WHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSL  151 (451)
Q Consensus        76 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~  151 (451)
                      .......+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++|+++++++++. +..+.+|+.
T Consensus        78 ~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            2334566789999999999988875 66799998876654433  3456677889999999998887775 456889987


Q ss_pred             cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce----eeeee-------cccc
Q 012996          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL----LRNIV-------FPSV  220 (451)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~-------~~~~  220 (451)
                      ........     ................++|++++. ..+.+....+...+|+......    .....       ....
T Consensus       158 ~~~~~~~~-----~~~~~~~~~~g~~p~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T d1ri6a_         158 SDDGHLVA-----QDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  231 (333)
T ss_dssp             CTTSCEEE-----EEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             ccCCccee-----eeceeeeeecCCCccEEEEeccce-eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence            54211000     000011122344567888988873 3334455667778887654321    11111       2245


Q ss_pred             eeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-CCCcEEEE--
Q 012996          221 IDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVRVW--  295 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~dg~i~iw--  295 (451)
                      ...++++++++++++. ..++.+.+|++......      ........+...+.+++|+| |++|++++ .++.|++|  
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSV------LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC------EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             ceeEEEecccCceeeecccCCeEEEEEEcCCCCE------EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            6678899999877765 45678999998765321      22222333456678999999 99877765 46889999  


Q ss_pred             eCCCCce--EEEeec
Q 012996          296 DPITHNI--VRMFRL  308 (451)
Q Consensus       296 d~~~~~~--~~~~~~  308 (451)
                      |..+|.+  +..+..
T Consensus       306 d~~tG~l~~~~~~~~  320 (333)
T d1ri6a_         306 VGEQGLLHEKGRYAV  320 (333)
T ss_dssp             ETTTTEEEEEEEEEC
T ss_pred             ECCCCcEEEEEeccC
Confidence            5566654  344443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.3e-20  Score=164.80  Aligned_cols=274  Identities=12%  Similarity=0.096  Sum_probs=183.2

Q ss_pred             CCCCCCccEEEEECCCCc-ee--eeecCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeee---ccccCCeeE
Q 012996           55 QPSASSGSILYWSWSKPQ-VE--VKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKW---HAHYRAVTC  127 (451)
Q Consensus        55 ~~~~d~g~i~vw~~~~~~-~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~  127 (451)
                      +++.+|++|++|+++... ..  ....+.+.+..|+|+|||++|+++ ..|+.|++|++........+   ..+...+..
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence            333344999999987543 22  334577899999999999998554 45899999999876544333   234456788


Q ss_pred             EEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEE
Q 012996          128 LVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWS  205 (451)
Q Consensus       128 ~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd  205 (451)
                      ++|+|||++|++++. ++.+.+|+....         ..........+...+.++.+++++  +++++++ .+..+.+|+
T Consensus        88 l~~spDg~~l~v~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~s~d~--~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          88 ISTDHQGQFVFVGSYNAGNVSVTRLEDG---------LPVGVVDVVEGLDGCHSANISPDN--RTLWVPALKQDRICLFT  156 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETT---------EEEEEEEEECCCTTBCCCEECTTS--SEEEEEEGGGTEEEEEE
T ss_pred             EEEcCCCCEEeecccCCCceeeeccccc---------cceecccccCCCccceEEEeeecc--eeeeccccccceeeEEE
Confidence            999999999998875 668899987441         122233344566677888999998  5555555 556799999


Q ss_pred             cCCCceeeeee-------cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeee---eccCCcceeE
Q 012996          206 LLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS---LSDHSKAVTC  274 (451)
Q Consensus       206 ~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~v~~  274 (451)
                      ...........       .......++|++++.+++... ..+...+++..........  ...+..   ..........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--EEEEECSCTTCCSCCCEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee--eeeeeeeecCCCcccccee
Confidence            87654332221       334567899999998887665 4567788887554321100  001111   1123345677


Q ss_pred             EEEec-CCEEE-EEcCCCcEEEEeCCCCceEEEee---cCCCCeeEEEEEecCceeeec-cCCCCccccccCC
Q 012996          275 LAYST-GDLLI-SGSEDGMVRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRHG  341 (451)
Q Consensus       275 ~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~-s~d~~i~iw~~~~  341 (451)
                      +++++ +++++ ++..++.+.+|++........+.   .....+.+++|+|||++|+++ +.++.|.+|++..
T Consensus       235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            88999 66554 45667889999887654333322   334567899999999987665 4568899997653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=5.9e-19  Score=159.38  Aligned_cols=285  Identities=8%  Similarity=-0.102  Sum_probs=196.1

Q ss_pred             CCCceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------c
Q 012996           35 PPHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------Q  100 (451)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~  100 (451)
                      +...+...+  ++|+|+.+++...    ..+.|.+||..+++..... +......++|+|||++|++++          .
T Consensus        19 ~~~p~~~~a--~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          19 ADGPTNDEA--PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCCccccc--cCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            444566666  9999999876422    1267999999988876553 333445799999999998874          3


Q ss_pred             CCCEEEEEcCCCcceeeeccccCCe-------eEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccceecc
Q 012996          101 SGDIYMWEVASGRLLKKWHAHYRAV-------TCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSF  171 (451)
Q Consensus       101 dg~i~iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  171 (451)
                      ++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+...           ..    .
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-----------~~----~  160 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-----------SS----D  160 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-----------Ce----E
Confidence            5779999999999988876655443       4578888888766554  356788888743           11    1


Q ss_pred             cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-------ccceeEEEECCCCCEEEEEeCCCcEEE
Q 012996          172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALDPAEHVFYAGSRDGSIYI  244 (451)
Q Consensus       172 ~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (451)
                      ..+.....++.+++++. ..+++.+.|+.+.+|+...+........       ......+.+++++.+ +..+.++.+++
T Consensus       161 ~~~~~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~  238 (373)
T d2madh_         161 DQLLSSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQ  238 (373)
T ss_pred             EEEeccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEE
Confidence            22334456788888875 5668889999999999988877665431       122344555665544 45567888999


Q ss_pred             EEccCCCCCCCCCCceeeeeeccC----------CcceeEEEEec-----------CCEEEEEcCCCcEEEEeCCCCceE
Q 012996          245 AALNAESPSTSSYGMHIIGSLSDH----------SKAVTCLAYST-----------GDLLISGSEDGMVRVWDPITHNIV  303 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~  303 (451)
                      |+.......       .......+          ......+++++           +..+++...++.+.+||..+++.+
T Consensus       239 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~  311 (373)
T d2madh_         239 ADISAAGAT-------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             EEcCCCeEE-------EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEE
Confidence            988765321       01111111          11222233333           445556677888999999999999


Q ss_pred             EEeecCCCCeeEEEEEecCce--eeeccCCCCccccccCCCCCCCc
Q 012996          304 RMFRLAKGPVNNILVVRRPLY--LNLGSFSNPHTSSRRHGSQLPPP  347 (451)
Q Consensus       304 ~~~~~~~~~v~~l~~s~~~~~--l~~~s~d~~i~iw~~~~~~~~~~  347 (451)
                      ..+.. ...+..++|+|||+.  +++++.|+.|++||..+++....
T Consensus       312 ~~~~~-~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~  356 (373)
T d2madh_         312 SQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEecC-CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            98864 567899999999984  47889999999999987765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=9.2e-19  Score=156.89  Aligned_cols=275  Identities=11%  Similarity=0.000  Sum_probs=187.3

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec-C-
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P-   79 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~-~-   79 (451)
                      .++.|.+||..+++.+.++..+..+     .++  |+|+|+++++++.         .++.|.+||..+++...... + 
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~~~-----~~a--~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGFLP-----NPV--VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD   98 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECSSC-----EEE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CcCeEEEEECCCCcEEEEEECCCCC-----ceE--EcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC
Confidence            4567999999999999988764322     355  9999999987542         23899999999887654321 1 


Q ss_pred             ------CCCeeEEEECCCCcEEEEec--cCCCEEEEEcCCCcceeeeccccC-------CeeEEEEccCCcEEEEe-eCC
Q 012996           80 ------AEPIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYR-------AVTCLVFSEDGSFLISG-SED  143 (451)
Q Consensus        80 ------~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~s~-~~d  143 (451)
                            ......++|+|++++++++.  .+..+.+|+..+++.+..+..+..       ....+.++++++.++.. ..+
T Consensus        99 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~  178 (355)
T d2bbkh_          99 APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE  178 (355)
T ss_dssp             CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred             cceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC
Confidence                  23456789999999887764  456799999999988877654332       22345555555554433 223


Q ss_pred             CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee--e-----
Q 012996          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI--V-----  216 (451)
Q Consensus       144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~-----  216 (451)
                      +.+.+++....                ...+...+....+...+  ..++.++.++.+++|++..+......  .     
T Consensus       179 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  240 (355)
T d2bbkh_         179 GTPEITHTEVF----------------HPEDEFLINHPAYSQKA--GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA  240 (355)
T ss_dssp             SCCEEEECCCC----------------SCTTSCBCSCCEEETTT--TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             CeEEEEecccc----------------cceecceeeeccccCCC--CeEEEecCCCeEEEEecCCCcEEEEeccCCcccc
Confidence            34444444220                11233344455666665  67888899999999999877543211  1     


Q ss_pred             ------cccceeEEEECCCCCEEEEEeCC----------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996          217 ------FPSVIDAIALDPAEHVFYAGSRD----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (451)
Q Consensus       217 ------~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  279 (451)
                            .+.....++++|++..+++...+          ..|.+||..+..         .+..+. +...+.+++|+| 
T Consensus       241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~---------~~~~~~-~~~~~~~~a~spD  310 (355)
T d2bbkh_         241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFE-MGHEIDSINVSQD  310 (355)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEE-EEEEECEEEECCS
T ss_pred             eEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc---------EEEEec-CCCCEEEEEEcCC
Confidence                  12334568899999988876544          369999998863         333443 345688999999 


Q ss_pred             CC--EEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996          280 GD--LLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (451)
Q Consensus       280 ~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (451)
                      ++  ++++++.|+.|.+||+.+++.++++..+...-..+.+.+
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             CCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            76  456778899999999999999999987655445554443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=2e-17  Score=149.21  Aligned_cols=282  Identities=8%  Similarity=-0.086  Sum_probs=189.4

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec-CC
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-PA   80 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~-~~   80 (451)
                      ..+.|.+||..+++.+.++..+..+     .+.  |+|||+++++++.         .++.|.+||..+++...... +.
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~~-----~~a--~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~  117 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFLP-----NPV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD  117 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCc-----cEE--EcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCC
Confidence            3467999999999999988654432     345  9999999988753         23789999999888754432 22


Q ss_pred             C-------CeeEEEECCCCcEEEEec--cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE-EEeeCCCcEEEee
Q 012996           81 E-------PIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWS  150 (451)
Q Consensus        81 ~-------~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd  150 (451)
                      .       ....+.|+++++.+++..  .++.+.+|+....+.....    ....++.++|+++.+ ++.+.|+.+.+|+
T Consensus       118 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~  193 (373)
T d2madh_         118 APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             cceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEE
Confidence            2       235678899988776554  4567889998776654433    345788999988654 6788899999999


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-------------c
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------------F  217 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~  217 (451)
                      .........       ..................+.+. ..++..+.++.+.+|+...+.......             .
T Consensus       194 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (373)
T d2madh_         194 HAGGAAGAG-------LVGAMLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             cCCceeeEE-------EeeeccccCccceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec
Confidence            855211100       0001111111122222223332 355666788899999987765432221             1


Q ss_pred             ccceeEEEECCCCCEEE----------EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC--EEE
Q 012996          218 PSVIDAIALDPAEHVFY----------AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD--LLI  284 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~----------~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~l~  284 (451)
                      +.....++++|++..++          ....++.+.+||..++.         .+..+ .+...+.+++|+| |+  +++
T Consensus       266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~---------~~~~~-~~~~~~~~~a~spDG~~~l~v  335 (373)
T d2madh_         266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---------TSSQI-SLGHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             cCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc---------EEEEe-cCCCCeeEEEECCCCCEEEEE
Confidence            22344566666665544          44556678899988863         33333 4667889999999 77  457


Q ss_pred             EEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          285 SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       285 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      +++.|+.|++||+.+++.++++..+....+.|++.++
T Consensus       336 t~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         336 LSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            8899999999999999999999988777788877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=6.3e-19  Score=157.97  Aligned_cols=275  Identities=10%  Similarity=-0.010  Sum_probs=179.7

Q ss_pred             EeeccCcccCCC----CCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe----------ccCCCEEEEEcCC
Q 012996           46 FLASSQLREQPS----ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG----------GQSGDIYMWEVAS  111 (451)
Q Consensus        46 ~~~~~~~l~~~~----~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~  111 (451)
                      .+|+++.+++..    ...+.|.+||..+++..... +.+....++|+|||++|++.          ..++.|.+||+.+
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            568888876542    11268999999998865443 33445579999999988764          3478899999999


Q ss_pred             Ccceeeecccc-------CCeeEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996          112 GRLLKKWHAHY-------RAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (451)
Q Consensus       112 ~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (451)
                      ++.+..+..+.       .....+.|+|++++++.++  .+..+.+|+..++           ..+..+..+....   .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~---~  153 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-----------AFKRMLDVPDCYH---I  153 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-----------EEEEEEECCSEEE---E
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC-----------cEeeEEecCCcce---E
Confidence            99887764332       2345689999999887764  4567899998552           2233332222111   1


Q ss_pred             EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (451)
Q Consensus       183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (451)
                      +....  ...++.+.|+...++..........+.       +...+....+.+++..++.++.++.+++|++......  
T Consensus       154 ~~~~~--~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  229 (355)
T d2bbkh_         154 FPTAP--DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK--  229 (355)
T ss_dssp             EEEET--TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE--
T ss_pred             eecCC--cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE--
Confidence            11111  233344455554444433322222111       2334555677888888999999999999999876421  


Q ss_pred             CCCceeeeeeccC----------CcceeEEEEec-CCEEEEEcCC----------CcEEEEeCCCCceEEEeecCCCCee
Q 012996          256 SYGMHIIGSLSDH----------SKAVTCLAYST-GDLLISGSED----------GMVRVWDPITHNIVRMFRLAKGPVN  314 (451)
Q Consensus       256 ~~~~~~~~~~~~~----------~~~v~~~~~~~-~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~v~  314 (451)
                           .+.....+          ......+++++ +..++....+          ..|.+||..+++.+.++.. ...+.
T Consensus       230 -----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~  303 (355)
T d2bbkh_         230 -----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEID  303 (355)
T ss_dssp             -----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEEC
T ss_pred             -----EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEE
Confidence                 11111111          12334578888 7776665433          3699999999999988875 35689


Q ss_pred             EEEEEecCc--eeeeccCCCCccccccCCCCCC
Q 012996          315 NILVVRRPL--YLNLGSFSNPHTSSRRHGSQLP  345 (451)
Q Consensus       315 ~l~~s~~~~--~l~~~s~d~~i~iw~~~~~~~~  345 (451)
                      +++|+|||+  ++++++.|+.|.+||..+++..
T Consensus       304 ~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         304 SINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            999999998  4567788999999999876543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.76  E-value=7.6e-17  Score=150.11  Aligned_cols=320  Identities=12%  Similarity=0.019  Sum_probs=187.3

Q ss_pred             CCCCeEEEECccCceeeeeecC--CCCCCceEEecceEeeccCcccCCCC--------CCccEEEEECCCCceeeeecCC
Q 012996           11 ADTGIGCWDLESGAEQLRYKSC--ASPPHGLACVGQRFLASSQLREQPSA--------SSGSILYWSWSKPQVEVKSLPA   80 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~--------d~g~i~vw~~~~~~~~~~~~~~   80 (451)
                      .|+.|.+||+.+++....+..+  ..+...+.++.  |||||++|+.++.        .++.+.+||+.+++......+.
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~--~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~  111 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS--ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP  111 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeE--ECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCC
Confidence            4678999999999887655433  34456677878  9999999987742        1278899999999887777788


Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc------------------ccCCeeEEEEccCCcEEEEeeC
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA------------------HYRAVTCLVFSEDGSFLISGSE  142 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~s~~~  142 (451)
                      +.+..+.|||||+.+|.. .++.+++|+..+++.......                  ..+....+.|+|||++|+....
T Consensus       112 ~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         112 NNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             TTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             ccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            899999999999999985 567899999988876554321                  2234566889999999998876


Q ss_pred             CCc-EEEeeCcchhhhhh-------------hhc-----------ccccce-----------ecccCCcCceeEEEEeec
Q 012996          143 DGC-VRIWSLLTVFEECE-------------SQR-----------ASHLYL-----------HSFTGHTLRITDIVIGYG  186 (451)
Q Consensus       143 dg~-i~vwd~~~~~~~~~-------------~~~-----------~~~~~~-----------~~~~~~~~~i~~i~~~~~  186 (451)
                      |.. +..|.+........             ...           ......           .........+..+.|.++
T Consensus       191 d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  270 (470)
T d2bgra1         191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ  270 (470)
T ss_dssp             ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET
T ss_pred             cCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCC
Confidence            543 54444321100000             000           000000           001112233556777777


Q ss_pred             CCeeEEEE-eeCCC---c--EEEEEcCCCceeeeee-------ccc-----ceeEEEECC--CCCEEEEEeCCCcEEEEE
Q 012996          187 GVSATIVS-ASEDR---T--CKVWSLLKGRLLRNIV-------FPS-----VIDAIALDP--AEHVFYAGSRDGSIYIAA  246 (451)
Q Consensus       187 ~~~~~l~s-~~~d~---~--i~iwd~~~~~~~~~~~-------~~~-----~i~~~~~~~--~~~~l~~~~~dg~i~i~d  246 (451)
                      +  ..++. ....+   .  +..+|..++.......       ...     ......+.+  ++.+++.+..+|..++|.
T Consensus       271 ~--~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~  348 (470)
T d2bgra1         271 E--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY  348 (470)
T ss_dssp             T--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE
T ss_pred             C--ceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEE
Confidence            6  44433 22222   2  3334555554332211       000     111223333  344566777888666655


Q ss_pred             ccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC-c-----EEEEeCCCCceEEEe----ecCCCCeeE
Q 012996          247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-M-----VRVWDPITHNIVRMF----RLAKGPVNN  315 (451)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg-~-----i~iwd~~~~~~~~~~----~~~~~~v~~  315 (451)
                      .....        .....+..+...|..+.... +..++++..++ .     |.-.++..+.....+    ..|...+..
T Consensus       349 ~~~~g--------~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s  420 (470)
T d2bgra1         349 FQIDK--------KDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYS  420 (470)
T ss_dssp             EETTC--------SCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEE
T ss_pred             EeccC--------CceeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEE
Confidence            43322        22334444556677663333 44444544332 1     333344444444433    367778999


Q ss_pred             EEEEecCceee---eccCCCCccccccCCCC
Q 012996          316 ILVVRRPLYLN---LGSFSNPHTSSRRHGSQ  343 (451)
Q Consensus       316 l~~s~~~~~l~---~~s~d~~i~iw~~~~~~  343 (451)
                      ++|||||++++   ++...-.+.+|+...++
T Consensus       421 ~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~  451 (470)
T d2bgra1         421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK  451 (470)
T ss_dssp             EEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred             EEECCCCCEEEEEecCCCCCeEEEEECCCCC
Confidence            99999999987   44444557777765543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.76  E-value=1.6e-18  Score=154.84  Aligned_cols=318  Identities=8%  Similarity=-0.036  Sum_probs=208.9

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCC---------------------------CCCCceEEecceEeeccCcccCC
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCA---------------------------SPPHGLACVGQRFLASSQLREQP   56 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~~~l~~~   56 (451)
                      .++|++ .+|.|+|||+.+++.++++....                           .|...+.+..  ++|||+++++.
T Consensus        13 ~f~Sgg-~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~--gtpDGr~lfV~   89 (441)
T d1qnia2          13 GFWSGG-HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD--GRYDGKYLFIN   89 (441)
T ss_dssp             EEEECB-TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET--TEEEEEEEEEE
T ss_pred             EEEeCC-CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec--ccCCCCEEEEE
Confidence            467787 99999999999999888774421                           1223345555  78999999888


Q ss_pred             CCCCccEEEEECCCCceee--eecCCCCeeEEEECCCCc--EEEEeccCC-----------------CEEEEEcCCCcce
Q 012996           57 SASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANSHGT--YIAGGGQSG-----------------DIYMWEVASGRLL  115 (451)
Q Consensus        57 ~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~~  115 (451)
                      ...++.|.++|+.+.+...  .......+..++|+|+|+  |++..+.+.                 .+..+|..+.+..
T Consensus        90 d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          90 DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             cCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            7766999999999887654  334577899999999998  555444332                 2355787777776


Q ss_pred             eeeccccCCeeEEEEccCCcEEEEeeCCCc-EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGC-VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      ..+... +....+.|+|+|+++++++.+.. +..++..+.        .....+....    .-..+.+.+++  +++..
T Consensus       170 ~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~--------~~~d~i~v~n----~p~~~~~~~dG--k~~~v  234 (441)
T d1qnia2         170 WQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMR--------NDRDWVVVFN----VERIAAAVKAG--NFKTI  234 (441)
T ss_dssp             EEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC--------SSBCEEEEEE----HHHHHHHHHTT--CCBCC
T ss_pred             EEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCc--------ceEEEEEeCC----ccceEEEecCC--CEEEe
Confidence            666543 45788999999999988876642 322332110        0000111000    01122345565  44433


Q ss_pred             eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCC-CCc-eeeeeeccCCcc
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSS-YGM-HIIGSLSDHSKA  271 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~~  271 (451)
                       +.++.+.+++......+..+..+.....+.++|+|+++++ +..+++|.+||+......... ... ..+.......-.
T Consensus       235 -~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glg  313 (441)
T d1qnia2         235 -GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLG  313 (441)
T ss_dssp             -TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSC
T ss_pred             -CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccC
Confidence             4567788888777777888887777889999999998765 567899999998763210000 000 001111111123


Q ss_pred             eeEEEEec-CCEEEEEcCCCcEEEEeCCC----------CceEEEe-----ecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          272 VTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMF-----RLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       272 v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~-----~~~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                      ....+|.+ +..+.+.+.|..|..|++..          ...+..+     .+|...+.+..++|||++|++++.-..=|
T Consensus       314 plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         314 PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             cccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence            34568998 88888889999999999741          1233344     46777788888999999999997666556


Q ss_pred             ccccC
Q 012996          336 SSRRH  340 (451)
Q Consensus       336 iw~~~  340 (451)
                      ++.+-
T Consensus       394 ~~~~g  398 (441)
T d1qnia2         394 FLPVG  398 (441)
T ss_dssp             SCCCS
T ss_pred             CcCCC
Confidence            55544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.9e-15  Score=134.58  Aligned_cols=272  Identities=7%  Similarity=-0.089  Sum_probs=175.3

Q ss_pred             CCCC--eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCC---------CCCccEEEEECCCCceeeeec-
Q 012996           11 ADTG--IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQVEVKSL-   78 (451)
Q Consensus        11 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~d~g~i~vw~~~~~~~~~~~~-   78 (451)
                      .+|.  |.+||..+++.+..+..+..+  .   +.  |+|+|+.+++++         ..++.|.+||..+.+...... 
T Consensus        42 ~~g~~~~~~~d~~~~~~~~~~~~~~~~--~---~a--~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~  114 (368)
T d1mdah_          42 FAGTTENWVSCAGCGVTLGHSLGAFLS--L---AV--AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             TCSSEEEEEEETTTTEEEEEEEECTTC--E---EE--ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCcceEEEEeCCCCcEEEEEeCCCCC--c---ce--ECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC
Confidence            4555  666699999998887765422  2   44  999999887643         223889999999887654321 


Q ss_pred             C-------CCCeeEEEECCCCcEEEEec-cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           79 P-------AEPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        79 ~-------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      +       ......++|+|||++|+++. .++.+.+||+.+++....+..+.....   +......++..+.||.+.+|+
T Consensus       115 p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEE
T ss_pred             CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEE
Confidence            1       22345799999999998775 578999999999998888765544321   112345667777888888888


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-------------c
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------------F  217 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~  217 (451)
                      +........     ......+..+...+....+.+++  ..+.+.  .+.+.+++...+.......             .
T Consensus       192 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (368)
T d1mdah_         192 LAAAPAAAG-----IVGAQCTGAQNCSSQAAQANYPG--MLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             CCSSCCCCE-----ECCCCSCTTSCBCSCCEEETTTT--EEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred             ecCCceeee-----eeecccccccccceeecccccCc--EEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeec
Confidence            754211100     00011222333444445555554  444333  4556666665544332211             1


Q ss_pred             ccceeEEEECCCCCEEEEEeCC---------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC--EEEE
Q 012996          218 PSVIDAIALDPAEHVFYAGSRD---------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD--LLIS  285 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~l~s  285 (451)
                      +.....++++|++..+++...+         ..|.+||..+.+         .+..+. +...+.+++|+| ++  ++++
T Consensus       263 ~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---------~~~~~~-~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPIS-NGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCE-EEEEECEEEECCSSSCEEEEE
T ss_pred             CCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---------EeEEec-CCCceeEEEECCCCCEEEEEE
Confidence            2234568889998887765432         258899998874         333333 346788999999 75  3567


Q ss_pred             EcCCCcEEEEeCCCCceEEEeecCCC
Q 012996          286 GSEDGMVRVWDPITHNIVRMFRLAKG  311 (451)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (451)
                      +..|+.|++||..+++.++++.....
T Consensus       333 ~~~~~~v~v~D~~tgk~~~~i~~g~~  358 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             ETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             eCCCCeEEEEECCCCCEEEEEECCCC
Confidence            77899999999999999999986543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=1.4e-15  Score=136.74  Aligned_cols=264  Identities=10%  Similarity=-0.082  Sum_probs=168.6

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCCcceeeeccccC-------
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAHYR-------  123 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-------  123 (451)
                      ..|.+||..+++....... .....++|+|||++|++.+          .|+.|.+||..+++.+..+..+..       
T Consensus        46 ~~~~~~d~~~~~~~~~~~~-~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLG-AFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEE-CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             ceEEEEeCCCCcEEEEEeC-CCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence            4567778888876544332 2234689999999988753          467799999999998887754332       


Q ss_pred             CeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996          124 AVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (451)
Q Consensus       124 ~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~  202 (451)
                      ....++|+|||++|+++. .++.+.+||+.+           ......+..+....    +.+.+. ..++..+.||.+.
T Consensus       125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~-----------~~~~~~~~~~~~~~----~~~~~~-~~~v~~~~Dg~~~  188 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPG-----------ASDDQLTKSASCFH----IHPGAA-ATHYLGSCPASLA  188 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETT-----------TEEEEEEECSSCCC----CEEEET-TEEECCCCTTSCE
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCC-----------CcEeEEeeccCcce----EccCCC-ceEEEEcCCCCEE
Confidence            234689999999998776 579999999955           23333333332221    122222 5677788899999


Q ss_pred             EEEcCCCceeeeee-------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC-Cceeeee--eccCCcce
Q 012996          203 VWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY-GMHIIGS--LSDHSKAV  272 (451)
Q Consensus       203 iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~--~~~~~~~v  272 (451)
                      +|++..........       +...+....+.+++..++..  .+.+++++........... .......  ........
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  266 (368)
T d1mdah_         189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             EEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCc
Confidence            99887654332221       23344566777777666543  4567777766543210000 0000000  00011223


Q ss_pred             eEEEEec-CCEEEEEcCC---------CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCce--eeeccCCCCccccccC
Q 012996          273 TCLAYST-GDLLISGSED---------GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY--LNLGSFSNPHTSSRRH  340 (451)
Q Consensus       273 ~~~~~~~-~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~--l~~~s~d~~i~iw~~~  340 (451)
                      ..+++++ +..++....+         ..|.+||..+++.+.++.. ...+..++|+|||+.  ++++..|+.+.+||..
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            4577888 6655554322         3599999999999988875 457899999999973  4677789999999988


Q ss_pred             CCCC
Q 012996          341 GSQL  344 (451)
Q Consensus       341 ~~~~  344 (451)
                      +++.
T Consensus       346 tgk~  349 (368)
T d1mdah_         346 SDQD  349 (368)
T ss_dssp             SCEE
T ss_pred             CCCE
Confidence            7654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.42  E-value=1.9e-11  Score=108.77  Aligned_cols=227  Identities=10%  Similarity=0.001  Sum_probs=146.2

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCc------------------cEEE
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG------------------SILY   65 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g------------------~i~v   65 (451)
                      ++++.. .++.|.++|+.+++....+...  .......++  |+|+|+.+.+......                  .+..
T Consensus        86 lfV~d~-~~~rVavIDl~t~k~~~ii~iP--~g~gphgi~--~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          86 LFINDK-ANTRVARIRLDIMKTDKITHIP--NVQAIHGLR--LQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEET-TTTEEEEEETTTTEEEEEEECT--TCCCEEEEE--ECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             EEEEcC-CCCEEEEEECCCCcEeeEEecC--CCCCccceE--EeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            345556 8899999999999988766432  224455566  9999996543322112                  2355


Q ss_pred             EECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC-----------------------------------------CCE
Q 012996           66 WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS-----------------------------------------GDI  104 (451)
Q Consensus        66 w~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------------------------g~i  104 (451)
                      +|..+............+..++|+|+|+++++.+.+                                         +.+
T Consensus       161 iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~  240 (441)
T d1qnia2         161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP  240 (441)
T ss_dssp             EETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             ecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence            788887776665556678999999999998877543                                         334


Q ss_pred             EEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996          105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (451)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (451)
                      .+++......+..+..... ...+.++|||++++ ++..+++|.+||+.+..............+..............|
T Consensus       241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence            4454444555666655544 57899999999875 567799999999977543222111111111111111122334466


Q ss_pred             eecCCeeEEEEeeCCCcEEEEEcCC----------Cceeeee------ecccceeEEEECCCCCEEEEEeC
Q 012996          184 GYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNI------VFPSVIDAIALDPAEHVFYAGSR  238 (451)
Q Consensus       184 ~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~  238 (451)
                      .+.+  ..+.+...|..|..|++..          ...+..+      .|...+.+.+++|+|++|++++.
T Consensus       320 d~~g--~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         320 DGRG--NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             CSSS--EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             cCCc--eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            6665  7888888999999999741          1122222      24555666778999999999953

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=6e-11  Score=109.60  Aligned_cols=281  Identities=9%  Similarity=-0.010  Sum_probs=154.3

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec------------
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL------------   78 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~------------   78 (451)
                      .++.+.|||+.+++.. .+   ..++..+....  |||+|+.+|....  +.+.+|+..++.......            
T Consensus        90 ~~~~~~l~d~~~~~~~-~l---~~~~~~~~~~~--~SPDG~~ia~~~~--~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~  161 (470)
T d2bgra1          90 YTASYDIYDLNKRQLI-TE---ERIPNNTQWVT--WSPVGHKLAYVWN--NDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (470)
T ss_dssp             EEEEEEEEETTTTEEC-CS---SCCCTTEEEEE--ECSSTTCEEEEET--TEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             cCceEEEEECCCCccc-cc---ccCCccccccc--cccCcceeeEeec--ccceEEECCCCceeeeeeccCCCccccccc
Confidence            3567889999988753 33   34567777888  9999999998654  789999988776443221            


Q ss_pred             -------CCCCeeEEEECCCCcEEEEeccCCC-EEE-----------------------------------EEcCCCcce
Q 012996           79 -------PAEPIKPIAANSHGTYIAGGGQSGD-IYM-----------------------------------WEVASGRLL  115 (451)
Q Consensus        79 -------~~~~v~~~~~~~~~~~l~~~~~dg~-i~i-----------------------------------wd~~~~~~~  115 (451)
                             ..+....+.|||||++|+....|.. +..                                   |++..+...
T Consensus       162 d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~  241 (470)
T d2bgra1         162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (470)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSS
T ss_pred             ceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCccee
Confidence                   1234567889999999998765433 333                                   333222211


Q ss_pred             eeec-----------cccCCeeEEEEccCCcEEEEee-CCC---cEEEeeC--cchhhhhhhhcc--cccceecccCCcC
Q 012996          116 KKWH-----------AHYRAVTCLVFSEDGSFLISGS-EDG---CVRIWSL--LTVFEECESQRA--SHLYLHSFTGHTL  176 (451)
Q Consensus       116 ~~~~-----------~~~~~v~~~~~~~~~~~l~s~~-~dg---~i~vwd~--~~~~~~~~~~~~--~~~~~~~~~~~~~  176 (451)
                      ....           .....+..+.|.+++..++... ..+   .+.++++  .++.........  .......+..|..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~  321 (470)
T d2bgra1         242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (470)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             eeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccC
Confidence            1110           1122345678888777555432 222   2344443  221110000000  0000001111222


Q ss_pred             ceeEEEEeecCCeeEEEEeeCCCcEEEE--EcCCCceeeeeecccceeEEEECCCCCE-EEEEeCCC----c--EEEEEc
Q 012996          177 RITDIVIGYGGVSATIVSASEDRTCKVW--SLLKGRLLRNIVFPSVIDAIALDPAEHV-FYAGSRDG----S--IYIAAL  247 (451)
Q Consensus       177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg----~--i~i~d~  247 (451)
                      .  ...+.+++.+.+++.+..+|...||  +...+...........|..+ ++++++. +++++.++    .  |+-.++
T Consensus       322 ~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~  398 (470)
T d2bgra1         322 S--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (470)
T ss_dssp             C--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             C--CceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEEC
Confidence            2  2234455544566777788766555  55444443333345556655 3333333 34444332    2  333344


Q ss_pred             cCCCCCCCCCCceee-eeeccCCcceeEEEEec-CCEEEE---EcCCCcEEEEeCCCCceEEEeec
Q 012996          248 NAESPSTSSYGMHII-GSLSDHSKAVTCLAYST-GDLLIS---GSEDGMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       248 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~  308 (451)
                      .....      ..++ ..+.+|...+.+++||| |++++.   +...-.+.+|+..+++.++.+..
T Consensus       399 ~g~~~------~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         399 SDYTK------VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             TCTTC------EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCc------eeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence            43221      1222 23457888999999999 988773   33344589999999999998864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.33  E-value=1e-09  Score=94.60  Aligned_cols=231  Identities=9%  Similarity=0.041  Sum_probs=154.4

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  159 (451)
                      ...+..++++|||+++++...++.|+.|+.. ++ ...+......+.+++|+++|+++++...++.+..|+.....    
T Consensus        27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~----  100 (302)
T d2p4oa1          27 NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD----  100 (302)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT----
T ss_pred             CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccc----
Confidence            3467899999999999998889988888844 43 33444566789999999999999988888888888864311    


Q ss_pred             hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-----------ccceeEEEECC
Q 012996          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----------PSVIDAIALDP  228 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~i~~~~~~~  228 (451)
                         .....+. ..........+++.+++  +++++.+.++.+..+|...+........           ......+.++.
T Consensus       101 ---~~~~~~~-~~~~~~~~n~i~~~~~g--~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1         101 ---GTVETLL-TLPDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             ---SCEEEEE-ECTTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             ---cceeecc-ccCCccccceeEEccCC--CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence               0111111 11234557788888887  7888888889999999877653322211           12345555543


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCce--EEE
Q 012996          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--VRM  305 (451)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~  305 (451)
                       +..+++.+..+.|+.++.........      . ....+......+++.+ |+++++...++.|..++.. ++.  +..
T Consensus       175 -~~l~~~~~~~~~i~~~~~~~~~~~~~------~-~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~  245 (302)
T d2p4oa1         175 -NFLYVSNTEKMLLLRIPVDSTDKPGE------P-EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ  245 (302)
T ss_dssp             -TEEEEEETTTTEEEEEEBCTTSCBCC------C-EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred             -CceeeecCCCCeEEeccccccccccc------c-ccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEe
Confidence             34555667788898888876432111      1 1111234567799999 8888888889999999865 443  333


Q ss_pred             eecCCCCeeEEEE---EecCceeeeccCC
Q 012996          306 FRLAKGPVNNILV---VRRPLYLNLGSFS  331 (451)
Q Consensus       306 ~~~~~~~v~~l~~---s~~~~~l~~~s~d  331 (451)
                      ........++++|   ++|++.|..++..
T Consensus       246 ~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         246 AEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            3334456899999   5677877655443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=4.5e-09  Score=88.79  Aligned_cols=238  Identities=13%  Similarity=0.050  Sum_probs=149.4

Q ss_pred             cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC---CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996           62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI  138 (451)
Q Consensus        62 ~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (451)
                      .|.|-|.+.............+..-+|||||+.||......   .+.+.+...+.. ..+..+.+......|+|+|+.++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeee
Confidence            68888888766666655677888999999999998764432   366667655543 34455778888999999999888


Q ss_pred             EeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc--EEEEEcCCCceeeee
Q 012996          139 SGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRNI  215 (451)
Q Consensus       139 s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~  215 (451)
                      .... ++...++....         ... ................+++.+. ..+++...++.  |.+.++..+......
T Consensus        99 ~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~~~~~  167 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDL---------ASG-QIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAPQRIT  167 (269)
T ss_dssp             EEECTTSSCEEEEEET---------TTC-CEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred             EeeecCCccceeeccc---------ccc-cceeeeeccccccccccccccc-cceecccccCCceEeeeecccccceeee
Confidence            6554 33333333211         111 1122222333334445555553 45555555554  555666666554444


Q ss_pred             ecccceeEEEECCCCCEEEEEeCCC-cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC---CC
Q 012996          216 VFPSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE---DG  290 (451)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~---dg  290 (451)
                      ..........|+|+++.++..+.++ ...+|......        ... ....+........|+| |+.|+..+.   ..
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~--------~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~  238 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--------GGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGS  238 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--------CCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEE
T ss_pred             cccccccccccccccceeEEEeecCCceeeeEeeccc--------ccc-eEeecCccccceEECCCCCEEEEEEcCCCCc
Confidence            4666777889999999888765544 44444433321        111 2333455667889999 888875543   34


Q ss_pred             cEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996          291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (451)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (451)
                      .|.++++..+.. ..+....+.+...+|||-
T Consensus       239 ~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         239 VLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             EEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence            689999876654 556666778888999983

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.29  E-value=2.8e-09  Score=92.07  Aligned_cols=244  Identities=11%  Similarity=0.112  Sum_probs=153.9

Q ss_pred             CCeeEEEECCCCcEEEEecc-------CCCEEEEEcCCCcceeeecc----ccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996           81 EPIKPIAANSHGTYIAGGGQ-------SGDIYMWEVASGRLLKKWHA----HYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  149 (451)
                      .....++|.|+|+++++...       +|.|..||..++........    ..+....+.|.++++.++++...+.|..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34577899999998876432       46788999877764433221    22345789999999888888777778888


Q ss_pred             eCcchhhhhhhhcccccceecccCCc-CceeEEEEeecCCeeEEEEeeC---------------CCcEEEEEcCCCceee
Q 012996          150 SLLTVFEECESQRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASE---------------DRTCKVWSLLKGRLLR  213 (451)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~  213 (451)
                      +.......        .......+.. ...+++++.+++  ++.++-..               .|.|..++. .++...
T Consensus        98 ~~~g~~~~--------~~~~~~~g~~~~~pndl~~d~~G--~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~  166 (314)
T d1pjxa_          98 QTDGTFEE--------IAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ  166 (314)
T ss_dssp             ETTSCEEE--------CCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE
T ss_pred             eCCCcEEE--------EEeccccccccCCCcEEEECCCC--CEEEecCccCcccccccceeccCCceEEEEee-cCceeE
Confidence            87431100        0001111111 135678888877  66665322               234555553 344333


Q ss_pred             eeecccceeEEEECCCCC----EEE-EEeCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEEEE
Q 012996          214 NIVFPSVIDAIALDPAEH----VFY-AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISG  286 (451)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~----~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~  286 (451)
                      ....-...+.++|+|+++    .|+ +-+..+.|+.||+.......   ..+....+.+ +......|++.. |++.++.
T Consensus       167 ~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~---~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE---NKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---EEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc---eeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            333333456789988764    454 44677889999986542110   0011112222 223456899998 8888888


Q ss_pred             cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccc
Q 012996          287 SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSR  338 (451)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~  338 (451)
                      ...+.|.+||...++.+..+..+....++++|.|+++.| ++.+.+|.|...+
T Consensus       244 ~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            788999999998888888888777788999999999744 5656667665544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.29  E-value=4.3e-09  Score=91.23  Aligned_cols=236  Identities=13%  Similarity=0.091  Sum_probs=149.8

Q ss_pred             CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC----CcEEEeeCcchhh
Q 012996           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFE  156 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~  156 (451)
                      ..+..++|.++|++.++-...+.|+.|+...+.....+.........++++++|+++++...+    +.+...+....  
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~--  117 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD--  117 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC--
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc--
Confidence            455789999999988887788999999987776665555566678899999999887765432    23444444221  


Q ss_pred             hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC------CCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (451)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (451)
                             .......-..-......+++.+++  ++.++...      .+.+..++...+........-...+.++|+|++
T Consensus       118 -------~~~~~~~~~~~~~~~nd~~~d~~G--~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg  188 (319)
T d2dg1a1         118 -------NLQDIIEDLSTAYCIDDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  188 (319)
T ss_dssp             -------SCEEEECSSSSCCCEEEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             -------eeeeeccCCCcccCCcceeEEecc--ceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecccc
Confidence                   000111111123346778888887  65555332      233555555433322222233456789999999


Q ss_pred             CEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996          231 HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (451)
Q Consensus       231 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  308 (451)
                      +.|+++ +..+.|+.|++............... ...........|++.+ |++.++....+.|.+||. .|+.+.++..
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~-~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIP-YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE-EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceee-eccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence            877655 56789999998754321110000111 1111223456899999 888888888999999995 7999988864


Q ss_pred             C------CCCeeEEEEEecCceeeecc
Q 012996          309 A------KGPVNNILVVRRPLYLNLGS  329 (451)
Q Consensus       309 ~------~~~v~~l~~s~~~~~l~~~s  329 (451)
                      .      ...+++++|.+++..+++.+
T Consensus       267 P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         267 PGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            3      33578999999887776554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=1.2e-09  Score=92.01  Aligned_cols=234  Identities=9%  Similarity=-0.005  Sum_probs=148.8

Q ss_pred             CeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996           82 PIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  160 (451)
                      ....|+++++|++.++. +..+.+..++............-......++++++++++++....+.+++++-.+       
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-------   87 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-------   87 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-------
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecc-------
Confidence            46899999999976654 4456677766543322222112223457899999999887777776777665422       


Q ss_pred             hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-ecccceeEEEECCCCCEEEEEeCC
Q 012996          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGSRD  239 (451)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d  239 (451)
                          ...+.... ......++++.+++  +++++-.....+..++.......... ........++++|+++.+++...+
T Consensus        88 ----~~~~~~~~-~~~~p~~iavd~~g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~  160 (260)
T d1rwia_          88 ----NQTVLPFD-GLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN  160 (260)
T ss_dssp             ----CCEECCCC-SCCSEEEEEECTTC--CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGG
T ss_pred             ----ceeeeeee-eeeecccccccccc--eeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccc
Confidence                22222222 23456788888876  67776666677777776544322211 123456789999999988888888


Q ss_pred             CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996          240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV  318 (451)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (451)
                      +.|..++.....        . .............|++.+ ++++++....+.|..++...................|++
T Consensus       161 ~~i~~~d~~~~~--------~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~  231 (260)
T d1rwia_         161 NRVVKLEAESNN--------Q-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV  231 (260)
T ss_dssp             TEEEEECTTTCC--------E-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEE
T ss_pred             ccccccccccce--------e-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEE
Confidence            899999887643        1 111123345678899999 888888888888998886544322221222345789999


Q ss_pred             EecCceeeeccCCCCccccc
Q 012996          319 VRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       319 s~~~~~l~~~s~d~~i~iw~  338 (451)
                      +++|..+++-..++.|+..+
T Consensus       232 d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         232 DSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEEC
T ss_pred             eCCCCEEEEECCCCEEEEEe
Confidence            99998777756566555444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.28  E-value=9e-10  Score=94.99  Aligned_cols=236  Identities=12%  Similarity=0.027  Sum_probs=154.3

Q ss_pred             ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-e
Q 012996           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-K  116 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~  116 (451)
                      .+..++  +.|+|+++++...+ ++|..|+.... ..........+.+++|+++|+++++...++.+..|+....... .
T Consensus        29 ~~e~iA--v~pdG~l~vt~~~~-~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLA--SAPDGTIFVTNHEV-GEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEE--ECTTSCEEEEETTT-TEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEE--ECCCCCEEEEeCCC-CEEEEEeCCCC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            455667  99999988887776 99988886654 3344445678999999999999998888888888887543221 1


Q ss_pred             ee--ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          117 KW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       117 ~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      .+  .........+.+.++++++++.+.++.+..++............... ..............+.+..+   .++++
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ngi~~~~~---~l~~~  180 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-ARSNSESVFPAANGLKRFGN---FLYVS  180 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG-SCSSTTCCSCSEEEEEEETT---EEEEE
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc-ceeeccCcccccccccccCC---ceeee
Confidence            11  22445678999999999988888888888888754321110000000 00111122234455555432   67777


Q ss_pred             eeCCCcEEEEEcCCCceeee---eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996          195 ASEDRTCKVWSLLKGRLLRN---IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
                      .+..+.|..+++........   +........++++++|+++++...++.|..++.....        ..+......-..
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~--------~~~~~~~~~~~~  252 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIG  252 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTT
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE--------EEEEecCCCCCC
Confidence            78889999998876543322   2234556789999999988888889999999776532        223334444456


Q ss_pred             eeEEEEe---c-CCEEEEEcCC
Q 012996          272 VTCLAYS---T-GDLLISGSED  289 (451)
Q Consensus       272 v~~~~~~---~-~~~l~s~~~d  289 (451)
                      .++++|.   + ++.|+.++..
T Consensus       253 pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         253 STAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEEEECCSTTTTTEEEEEECT
T ss_pred             ceEEEEcCCCCCCCEEEEECCC
Confidence            8899994   4 5556554433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.1e-08  Score=86.87  Aligned_cols=232  Identities=9%  Similarity=0.184  Sum_probs=160.5

Q ss_pred             CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc------ccCCeeEEEEccC-CcEEEE-eeCCCcEEEeeCcc
Q 012996           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA------HYRAVTCLVFSED-GSFLIS-GSEDGCVRIWSLLT  153 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~s-~~~dg~i~vwd~~~  153 (451)
                      ....|+++++|+++++-..++.|++||. +|+.+..+..      .......+.+.++ +..+++ .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            4689999999998888777888999995 5776666532      1123455666554 344443 34455777777522


Q ss_pred             hhhhhhhhcccccceecc-cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCC
Q 012996          154 VFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPA  229 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~  229 (451)
                                  .....+ ........++++.+++  .++++....+.+.+++. +++.+..+.   +......+++.++
T Consensus       103 ------------~~~~~~~~~~~~~p~~~avd~~G--~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_         103 ------------QFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             ------------CEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS
T ss_pred             ------------cceeecCCCcccccceeccccCC--cEEEEeeccceeeEecc-CCceeecccccccccccceeeeccc
Confidence                        122222 2234456678887776  67777777788888885 566666654   3456788999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee--ccCCcceeEEEEec-CCEEEEEcC-CCcEEEEeCCCCceEEE
Q 012996          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRM  305 (451)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~  305 (451)
                      +..+++....+.|++||....          .+..+  .+.......|++.+ ++++++-.. ++.|.+|+ .+|+.+.+
T Consensus       168 g~i~v~d~~~~~V~~~d~~G~----------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~  236 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISA  236 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEE
T ss_pred             eeEEeeeccccceeeeecCCc----------eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEE
Confidence            999888888999999997653          23333  23455678999999 887777544 45799999 56888887


Q ss_pred             eecCC--CCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996          306 FRLAK--GPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (451)
Q Consensus       306 ~~~~~--~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~  341 (451)
                      +....  .....|++.|+|.+++ ++.++.|++|+...
T Consensus       237 ~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         237 LESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             EeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            75432  3578999999997655 45788999999764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.24  E-value=4.6e-09  Score=92.93  Aligned_cols=286  Identities=10%  Similarity=-0.001  Sum_probs=156.4

Q ss_pred             CCCCeEEE--ECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-eeee--ecCCCCeeE
Q 012996           11 ADTGIGCW--DLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVK--SLPAEPIKP   85 (451)
Q Consensus        11 ~dg~i~vw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-~~~~--~~~~~~v~~   85 (451)
                      ..+.|.++  |.++++....-.........+..++  |+++++.|.++..  +.+..|.+.... ....  .........
T Consensus        12 ~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la--~s~d~~~ly~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~p~~   87 (365)
T d1jofa_          12 PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKNIYGAAM--KKWSSFAVKSPTEIVHEASHPIGGHPRA   87 (365)
T ss_dssp             SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSEEEEEEB--TEEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEE--EcCCCCEEEEEeC--CcEEEEEEeCCCCeEEEeeecCCCCcEE
Confidence            45567555  5555554211111111223344566  9999999888755  577777765332 2211  123445678


Q ss_pred             EEECCCCcEEE--Eecc-CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996           86 IAANSHGTYIA--GGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        86 ~~~~~~~~~l~--~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      +.++++++.+.  +... .+.|..+                     .+.+++........+...++....          
T Consensus        88 v~~~~~~~~~~v~~a~~~~~~v~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~----------  136 (365)
T d1jofa_          88 NDADTNTRAIFLLAAKQPPYAVYAN---------------------PFYKFAGYGNVFSVSETGKLEKNV----------  136 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEE---------------------EESSSCCEEEEEEECTTCCEEEEE----------
T ss_pred             EEECCCCCEEEEEEecCCCCEEEEe---------------------EccCCCCcceeEeeeecceecCcc----------
Confidence            88899888543  3221 2334333                     333333222211111111111110          


Q ss_pred             ccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCCCceee---eee---cccceeEEEECCCCCEEEE
Q 012996          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLR---NIV---FPSVIDAIALDPAEHVFYA  235 (451)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~---~~~---~~~~i~~~~~~~~~~~l~~  235 (451)
                           ..........+.++.|+|++  +++++++. ...|.+|+......+.   ...   .......++|+|+++++++
T Consensus       137 -----~~~~~q~~~h~h~v~~sPdG--~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv  209 (365)
T d1jofa_         137 -----QNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             -----EEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             -----cCcccCCCCcceEEEECCCC--CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEE
Confidence                 00001112235688899888  66666553 4578888765432221   111   3457889999999999877


Q ss_pred             Ee-CCCcEEEEEccCCCCCCCCCCceeeee--------------eccCCcceeEEEEec-CCEEEEEcC------CCcEE
Q 012996          236 GS-RDGSIYIAALNAESPSTSSYGMHIIGS--------------LSDHSKAVTCLAYST-GDLLISGSE------DGMVR  293 (451)
Q Consensus       236 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~~~-~~~l~s~~~------dg~i~  293 (451)
                      .. .++.|.+|++........    .....              ...+......+.++| +++|+++..      .+.|.
T Consensus       210 ~~e~~~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~  285 (365)
T d1jofa_         210 LMEAGNRICEYVIDPATHMPV----YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA  285 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEE----EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred             eccCCCEEEEEEecCCCceEE----EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEE
Confidence            66 577899999876542110    00000              112233456789999 998887742      23477


Q ss_pred             EEeCCCCceEEEe------ecCCCCeeEEEEEe-cCceeeec-cCCCCccccccCCC
Q 012996          294 VWDPITHNIVRMF------RLAKGPVNNILVVR-RPLYLNLG-SFSNPHTSSRRHGS  342 (451)
Q Consensus       294 iwd~~~~~~~~~~------~~~~~~v~~l~~s~-~~~~l~~~-s~d~~i~iw~~~~~  342 (451)
                      .|++.....+...      ........+++++| +|++|+++ ..++.|.+|++.+.
T Consensus       286 ~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         286 GFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            7777543222211      12233567899998 88977655 57789999987754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=4.1e-09  Score=88.55  Aligned_cols=189  Identities=8%  Similarity=-0.039  Sum_probs=125.2

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV  125 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  125 (451)
                      +.+++.+.++.... +.+++++-.+............+.++++.++++++++-..+..+..++.................
T Consensus        64 v~~~g~i~v~d~~~-~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          64 VDGAGTVYVTDFNN-RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             ECTTCCEEEEETTT-EEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred             EcCCCCEEEeeeee-ceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCc
Confidence            77888766655544 67776665554444333334678899999999988877666777777764433322222223456


Q ss_pred             eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996          126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (451)
Q Consensus       126 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd  205 (451)
                      .+++++++++.+++...++.|..++....           ..............++++.+++  +++++....+.|..++
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~-----------~~~~~~~~~~~~p~gi~~d~~g--~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESN-----------NQVVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTC-----------CEEECCCSSCCSEEEEEECTTC--CEEEEETTTTEEEEEC
T ss_pred             ceeeecCCCCEeeeccccccccccccccc-----------eeeeeeccccCCCccceeeeee--eeeeeecCCCEEEEEe
Confidence            78999999998888888889999997431           1111122334456788888776  7777777788888888


Q ss_pred             cCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          206 LLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       206 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      ..... ...+.  .-.....|++++++.++++-..+++|+.++...
T Consensus       210 ~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         210 AGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             TTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            65443 22222  224568999999998777767777777665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.4e-09  Score=94.51  Aligned_cols=309  Identities=12%  Similarity=0.068  Sum_probs=169.1

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCC---------CCCccEEEEECCCCceeeeec---
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQVEVKSL---   78 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~d~g~i~vw~~~~~~~~~~~~---   78 (451)
                      .+|.|.+||+.+++...-+....-....+....  ||||+++++...         .. +.+.++|+.++.......   
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~SpD~~~vl~~~~~~~~~r~s~~-~~~~i~d~~~~~~~~l~~~~~  111 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYT-GYYVLSKIPHGDPQSLDPPEV  111 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCC-SEEEEEESSSCCCEECCCTTC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeE--ECCCCCeEEEEEcccceeEeecc-ccEEEEEccCCceeeccCccC
Confidence            578999999998876544443332333444445  999999877642         23 789999998877543322   


Q ss_pred             CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccC-----------------CeeEEEEccCCcEEEEe
Q 012996           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYR-----------------AVTCLVFSEDGSFLISG  140 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~-----------------~v~~~~~~~~~~~l~s~  140 (451)
                      ....+....|||||+.+|-.. ++.|++.+..++..++... +..+                 .-..+-|||||++|+..
T Consensus       112 ~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         112 SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            234566789999999998755 5678888887765544332 1111                 12467899999999976


Q ss_pred             eC-CCcEEEeeCcchhhhhh-----------hhc-------------ccccc----eecccCCcCceeEEEEeecCCeeE
Q 012996          141 SE-DGCVRIWSLLTVFEECE-----------SQR-------------ASHLY----LHSFTGHTLRITDIVIGYGGVSAT  191 (451)
Q Consensus       141 ~~-dg~i~vwd~~~~~~~~~-----------~~~-------------~~~~~----~~~~~~~~~~i~~i~~~~~~~~~~  191 (451)
                      .. +..|..+.+........           ...             .....    ..........+..+.|++++  .+
T Consensus       191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~--~~  268 (465)
T d1xfda1         191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST--KV  268 (465)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS--EE
T ss_pred             EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC--eE
Confidence            53 34444443321100000           000             00000    00011122245677888776  55


Q ss_pred             EEEe-eCC---CcEEEEEcCCCceeeeee--cccc----eeEEEECCCCCEEE---EEeCCC--cEEEEEccCCCCCCCC
Q 012996          192 IVSA-SED---RTCKVWSLLKGRLLRNIV--FPSV----IDAIALDPAEHVFY---AGSRDG--SIYIAALNAESPSTSS  256 (451)
Q Consensus       192 l~s~-~~d---~~i~iwd~~~~~~~~~~~--~~~~----i~~~~~~~~~~~l~---~~~~dg--~i~i~d~~~~~~~~~~  256 (451)
                      ++.. ..+   ..+.++|..+++....+.  .+..    -....|+|+|+.++   ..-.+|  .++.+++........ 
T Consensus       269 ~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~-  347 (465)
T d1xfda1         269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS-  347 (465)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS-
T ss_pred             EEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCC-
Confidence            4443 222   257889999987665543  2221    23467889987543   222333  455554432211000 


Q ss_pred             CCceeeeeeccCCcceeEE-EEec-CCEE-EEEcCCC--c--EEEEeCCCCceEEEee---cCCCCeeEEEEEecCceee
Q 012996          257 YGMHIIGSLSDHSKAVTCL-AYST-GDLL-ISGSEDG--M--VRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLN  326 (451)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~-~~~~-~~~l-~s~~~dg--~--i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~  326 (451)
                        ...+..+....-.|..+ .|++ ++.+ +++..++  .  +.--++..+.....+.   ........+.|||++++++
T Consensus       348 --~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v  425 (465)
T d1xfda1         348 --NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL  425 (465)
T ss_dssp             --SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred             --CceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEE
Confidence              01122333334455554 5777 4443 4554432  2  3333444332222222   2344678999999999987


Q ss_pred             ec
Q 012996          327 LG  328 (451)
Q Consensus       327 ~~  328 (451)
                      ..
T Consensus       426 ~~  427 (465)
T d1xfda1         426 LK  427 (465)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.2e-08  Score=83.40  Aligned_cols=237  Identities=12%  Similarity=0.103  Sum_probs=143.5

Q ss_pred             CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (451)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~   91 (451)
                      .|.|-|.. |.....+...   ...+...+  |||||+.||......  ..+.+.+...........+........|+|+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~---~~~~~sP~--wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRS---PQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEE---SSCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEcCC-CCCcEEEecC---CCceeeeE--ECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCC
Confidence            47777865 4444444332   24455556  999999999765442  3577777777777777778888999999999


Q ss_pred             CcEEEEecc-CCCEEEEEcCCC-cceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccce
Q 012996           92 GTYIAGGGQ-SGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYL  168 (451)
Q Consensus        92 ~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  168 (451)
                      |..++.... ++...++..... .................+++++..++ +...+|...+|....          .....
T Consensus        94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~----------~~~~~  163 (269)
T d2hqsa1          94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------NGGAP  163 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----------TSSCC
T ss_pred             CCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeec----------ccccc
Confidence            998876543 333333322222 22222233444445566777665544 444555544444321          11122


Q ss_pred             ecccCCcCceeEEEEeecCCeeEEEEe-eCCCcEEEE--EcCCCceeeeeecccceeEEEECCCCCEEEEEeC---CCcE
Q 012996          169 HSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVW--SLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR---DGSI  242 (451)
Q Consensus       169 ~~~~~~~~~i~~i~~~~~~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i  242 (451)
                      .....+........|++++  ..++.. ...+...+|  +...+. ..............|+|+|+.|+..+.   ...|
T Consensus       164 ~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         164 QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             EECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             eeeeccccccccccccccc--ceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence            2333455666777889888  555544 444444444  544443 333345566778899999998875543   3468


Q ss_pred             EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (451)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (451)
                      +++++....          ...+....+.+...+|||
T Consensus       241 ~~~~~dg~~----------~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         241 NLVSTDGRF----------KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEETTSCC----------EEECCCSSSEEEEEEECC
T ss_pred             EEEECCCCC----------EEEEeCCCCcEEeEEeCC
Confidence            899988753          334555567788889987

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.13  E-value=2.7e-08  Score=85.74  Aligned_cols=231  Identities=10%  Similarity=0.046  Sum_probs=145.7

Q ss_pred             EeeccCcccCCCCC------CccEEEEECCCCceeeeecC-----CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996           46 FLASSQLREQPSAS------SGSILYWSWSKPQVEVKSLP-----AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (451)
Q Consensus        46 ~~~~~~~l~~~~~d------~g~i~vw~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  114 (451)
                      |.++|++.++....      +|.|..||..++........     ......++|.++++.++++...+.|..++...+..
T Consensus        25 ~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~  104 (314)
T d1pjxa_          25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFE  104 (314)
T ss_dssp             ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEE
T ss_pred             EeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE
Confidence            88888877653321      26788899887765543322     23467899999998887777666788888755432


Q ss_pred             eeeecccc----CCeeEEEEccCCcEEEEeeC---------------CCcEEEeeCcchhhhhhhhcccccceecccCCc
Q 012996          115 LKKWHAHY----RAVTCLVFSEDGSFLISGSE---------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (451)
Q Consensus       115 ~~~~~~~~----~~v~~~~~~~~~~~l~s~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (451)
                      ........    ...+.+.+.++|++.++-..               +|.|..++..            ... ..+...-
T Consensus       105 ~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d------------g~~-~~~~~~~  171 (314)
T d1pjxa_         105 EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD------------GQM-IQVDTAF  171 (314)
T ss_dssp             ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT------------SCE-EEEEEEE
T ss_pred             EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec------------Cce-eEeeCCc
Confidence            22111111    23578999999988776422               1233333321            111 1111122


Q ss_pred             CceeEEEEeecCCe---eEEEEeeCCCcEEEEEcCCCceeee------ee--cccceeEEEECCCCCEEEEEeCCCcEEE
Q 012996          176 LRITDIVIGYGGVS---ATIVSASEDRTCKVWSLLKGRLLRN------IV--FPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (451)
Q Consensus       176 ~~i~~i~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~------~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (451)
                      ...+.++|++++++   .++++-+..+.|..||+.....+..      +.  .......++++++|++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            33467889887632   2445556788899998764332221      11  1234668999999998888888899999


Q ss_pred             EEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCC
Q 012996          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI  298 (451)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~  298 (451)
                      ||.....         ....+......+++++|.| ++ ++++.+.+|.|..+++.
T Consensus       252 ~dp~~g~---------~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         252 FGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBS---------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCE---------EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9987642         2334444556789999999 65 66777788888888864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=2.6e-07  Score=78.12  Aligned_cols=232  Identities=14%  Similarity=0.159  Sum_probs=151.0

Q ss_pred             EEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec------CCCCeeEEEECCC-CcEEEE-eccCCCEEEEEcCC
Q 012996           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL------PAEPIKPIAANSH-GTYIAG-GGQSGDIYMWEVAS  111 (451)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~-~~~dg~i~iwd~~~  111 (451)
                      ..++  +.++|+.+++-... +.|++||.+.........      .......+++.++ +.++++ .+.++.|.+++. .
T Consensus        26 ~gva--vd~dg~i~VaD~~n-~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          26 SGVA--VNAQNDIIVADTNN-HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             EEEE--ECTTCCEEEEEGGG-TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             cEEE--EcCCCCEEEEECCC-CEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            4445  78888866654444 889999976432221111      1113445665554 444443 345567777774 5


Q ss_pred             Ccceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc--cCCcCceeEEEEeecCC
Q 012996          112 GRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGV  188 (451)
Q Consensus       112 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~  188 (451)
                      +.....+. ........+++.+++.++++....+.+.+++...            ..+..+  ..+......+++.+++ 
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g------------~~~~~~g~~~~~~~~~~i~~d~~g-  168 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVVNDKQ-  168 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEECSSS-
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC------------ceeecccccccccccceeeeccce-
Confidence            66666553 3456678899999999888877778888887632            222222  3455667788887776 


Q ss_pred             eeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeee
Q 012996          189 SATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGS  264 (451)
Q Consensus       189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (451)
                       +.+++....+.|++||. +++.+..+..   ......++++|+|+++++-.. ++.|.+|+...          ..+..
T Consensus       169 -~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G----------~~~~~  236 (279)
T d1q7fa_         169 -EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----------QLISA  236 (279)
T ss_dssp             -EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------CEEEE
T ss_pred             -eEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC----------CEEEE
Confidence             78888888899999996 5666666642   335788999999997776543 45799998543          22333


Q ss_pred             ec--cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996          265 LS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (451)
Q Consensus       265 ~~--~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  301 (451)
                      +.  ........|++.| +. |++++.+..|++|......
T Consensus       237 ~~~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         237 LESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCCC
T ss_pred             EeCCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeeeec
Confidence            32  2234578899999 65 4555678999999987653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=3.6e-06  Score=71.38  Aligned_cols=226  Identities=14%  Similarity=0.078  Sum_probs=145.7

Q ss_pred             EEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996           85 PIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (451)
Q Consensus        85 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  163 (451)
                      +..|++ ++.+..+=-..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ .+.++|..++         
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg---------   88 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATG---------   88 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTC---------
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccc---------
Confidence            345665 4444455445678888998777543 222 3456789999999876665 454 5888998652         


Q ss_pred             cccceeccc--CCcCceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-
Q 012996          164 SHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-  236 (451)
Q Consensus       164 ~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  236 (451)
                      ....+....  .....++++.+.+++  ++.++...    .+.-.+|.+..++.......-...+.++|+++++.++.+ 
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G--~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             eeeEEeeeecCCCcccceeeEECCCC--CEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEee
Confidence            111121111  122357788888877  55555432    234566777677655555444556789999999876655 


Q ss_pred             eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE
Q 012996          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (451)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (451)
                      +..+.|+.|++.......... ........+.......+++.. |++.++.-..|.|..|| .+++.+..+......+++
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~-~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~  244 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTC  244 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEE
T ss_pred             cccceeeEeeecccccccccc-eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEE
Confidence            567789999886533211111 122223344456678899988 88777776788899999 578999999887778999


Q ss_pred             EEEE-ecCceeee
Q 012996          316 ILVV-RRPLYLNL  327 (451)
Q Consensus       316 l~~s-~~~~~l~~  327 (451)
                      ++|- ||.+.|..
T Consensus       245 ~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         245 PAFIGPDASRLLV  257 (295)
T ss_dssp             EEEESTTSCEEEE
T ss_pred             EEEeCCCCCEEEE
Confidence            9997 66665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.85  E-value=1.2e-06  Score=75.40  Aligned_cols=216  Identities=12%  Similarity=0.038  Sum_probs=128.3

Q ss_pred             CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC---CccEEEEECCCCceeeeec---CCCCee
Q 012996           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEVKSL---PAEPIK   84 (451)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~g~i~vw~~~~~~~~~~~~---~~~~v~   84 (451)
                      ..+.|..||..++.....+....   .....++  +.++|+++++...+   .+.+...+...........   ....+.
T Consensus        59 ~~g~I~ri~p~g~~~~~~~~~~~---~~p~gla--~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~n  133 (319)
T d2dg1a1          59 FEGNIFKINPETKEIKRPFVSHK---ANPAAIK--IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID  133 (319)
T ss_dssp             TTCEEEEECTTTCCEEEEEECSS---SSEEEEE--ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred             CCCEEEEEECCCCeEEEEEeCCC---CCeeEEE--ECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCc
Confidence            45556666655544433332222   2334555  88999877654321   1345555555554433322   234578


Q ss_pred             EEEECCCCcEEEEecc------CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhh
Q 012996           85 PIAANSHGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        85 ~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~  157 (451)
                      .+++.++|++.++...      .+.+..++.. +..+..+...-...+.++|+|+++.|+ +-+..+.|..|++......
T Consensus       134 d~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~  212 (319)
T d2dg1a1         134 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT  212 (319)
T ss_dssp             EEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             ceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCce
Confidence            8999999997776432      1235555533 333333333344567899999998664 4456788999987531100


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc-------ceeEEEECCCC
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE  230 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~i~~~~~~~~~  230 (451)
                      ..   ..................+++..++  ++.++....+.|.+||. .++.+..+..+.       .+.+++|.|..
T Consensus       213 ~~---~~~~~~~~~~~~~~~PdGl~vD~~G--~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         213 IQ---PFGATIPYYFTGHEGPDSCCIDSDD--NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             EE---EEEEEEEEECCSSSEEEEEEEBTTC--CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             ec---cccceeeeccCCccceeeeeEcCCC--CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            00   0000111111122335678888877  78888888999999995 788888887543       47899999988


Q ss_pred             CEEEEEeC
Q 012996          231 HVFYAGSR  238 (451)
Q Consensus       231 ~~l~~~~~  238 (451)
                      ..+++...
T Consensus       287 ~~~~~t~~  294 (319)
T d2dg1a1         287 NQLIICSN  294 (319)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEcC
Confidence            77776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.82  E-value=5.1e-07  Score=79.47  Aligned_cols=168  Identities=9%  Similarity=0.052  Sum_probs=103.4

Q ss_pred             CCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCccee---ee--ccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcc
Q 012996           81 EPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLK---KW--HAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLT  153 (451)
Q Consensus        81 ~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~---~~--~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~  153 (451)
                      ..+.++.|+|+|++++++.. ...|.+|+......+.   ..  .........+.|+|+++++++.. .+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            35789999999998887754 3468888765432221   11  22345678999999999886555 578899999855


Q ss_pred             hhhhhhhhcccc--------cceecccCCcCceeEEEEeecCCeeEEEEeeC-C-----CcEEEEEcCCCceeeeee---
Q 012996          154 VFEECESQRASH--------LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-D-----RTCKVWSLLKGRLLRNIV---  216 (451)
Q Consensus       154 ~~~~~~~~~~~~--------~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~~~~---  216 (451)
                      ............        ........+......+.++|++  ++|+++.. +     +.|..|++.....+....   
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCC--CEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            321100000000        0000112233445678899988  67776542 2     237777776532222111   


Q ss_pred             ----cccceeEEEECC-CCCEEEEEe-CCCcEEEEEccCC
Q 012996          217 ----FPSVIDAIALDP-AEHVFYAGS-RDGSIYIAALNAE  250 (451)
Q Consensus       217 ----~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~  250 (451)
                          .......++++| +|++|+++. .++.|.+|+++..
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence                234567899998 789887774 6689999988664

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.7e-07  Score=82.99  Aligned_cols=227  Identities=11%  Similarity=0.034  Sum_probs=133.1

Q ss_pred             EEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc---ccCCeeEEEEccCCcEEEEee---------CCCcEEEeeCcc
Q 012996           86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISGS---------EDGCVRIWSLLT  153 (451)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~---------~dg~i~vwd~~~  153 (451)
                      ..|.+++.++.. ..+|.|.+||+.+++....+..   ..-.+....||||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            358888776654 5678899999988876444432   223567889999999987753         356788899865


Q ss_pred             hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec--cc------------
Q 012996          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PS------------  219 (451)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~------------  219 (451)
                      +         ....+.........+....|+|+|  +.++-.. ++.|.+.+...+...+....  ..            
T Consensus       101 ~---------~~~~l~~~~~~~~~l~~~~wSPDG--~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vye  168 (465)
T d1xfda1         101 G---------DPQSLDPPEVSNAKLQYAGWGPKG--QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (465)
T ss_dssp             C---------CCEECCCTTCCSCCCSBCCBCSST--TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             C---------ceeeccCccCCccccceeeeccCC--ceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhh
Confidence            2         222222223334455667899998  5665554 56788888877655543321  11            


Q ss_pred             -----ceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCC------------CCCc-------------e-----eee
Q 012996          220 -----VIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTS------------SYGM-------------H-----IIG  263 (451)
Q Consensus       220 -----~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~------------~~~~-------------~-----~~~  263 (451)
                           .-.++-|||+|++|+.... +..+..+.+........            ....             .     +..
T Consensus       169 ee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~  248 (465)
T d1xfda1         169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (465)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             hhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccC
Confidence                 1246789999999988653 33344443321100000            0000             0     000


Q ss_pred             eeccCCcceeEEEEec-CCEEEEEcC-C---CcEEEEeCCCCceEEEeecCC-CC----eeEEEEEecCcee
Q 012996          264 SLSDHSKAVTCLAYST-GDLLISGSE-D---GMVRVWDPITHNIVRMFRLAK-GP----VNNILVVRRPLYL  325 (451)
Q Consensus       264 ~~~~~~~~v~~~~~~~-~~~l~s~~~-d---g~i~iwd~~~~~~~~~~~~~~-~~----v~~l~~s~~~~~l  325 (451)
                      ........+..+.|+| +.+++.... +   ..|.++|..++++...+.... +.    -....|+|+|+.+
T Consensus       249 ~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             cCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            0111233467889999 655554322 2   258889999998766554322 22    2346788999854

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=5.8e-06  Score=69.42  Aligned_cols=228  Identities=13%  Similarity=0.112  Sum_probs=124.4

Q ss_pred             Eeec--cCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc-C-----CCEEEEEcCCCcceee
Q 012996           46 FLAS--SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-S-----GDIYMWEVASGRLLKK  117 (451)
Q Consensus        46 ~~~~--~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~  117 (451)
                      .+|+  |+.+|-.+.  |.|.+.|+.+++......+.+.+...+|||||+.||.... +     ..|.+++..+++....
T Consensus         6 ~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC--DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEET--TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEeC--CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            6788  998887655  6788889998887766667778899999999999986532 2     2377888777765432


Q ss_pred             ec------cccCCeeEEEEccCCcEEEEeeCC------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996          118 WH------AHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (451)
Q Consensus       118 ~~------~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (451)
                      ..      ..........|+|+|+.|+.....      ..+...+...           .....   .+...... .+.+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~-~~~~  148 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG-----------INFVP---LNLGPATH-ILFA  148 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGG-----------TEEEE---CCSCSCSE-EEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCC-----------ceeEE---ecCCccce-eeec
Confidence            21      122345678999999988865332      1233333321           11111   11122222 2334


Q ss_pred             cCCeeEEEEeeCCC-----------cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC--CcEEEEEccCCCC
Q 012996          186 GGVSATIVSASEDR-----------TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESP  252 (451)
Q Consensus       186 ~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~  252 (451)
                      ++. ..++......           ..........................++++. .++....+  ..|+++|+.+...
T Consensus       149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~  226 (281)
T d1k32a2         149 DGR-RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDL  226 (281)
T ss_dssp             TTE-EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSC
T ss_pred             CCC-eEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCce
Confidence            431 3333332221           1112222222222222233334444555443 23333333  3577788876541


Q ss_pred             CCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE
Q 012996          253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR  304 (451)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~  304 (451)
                             +   .+..+. ......|+| |+.|+. ..+|.|.++|+.+++...
T Consensus       227 -------~---~lt~~~-~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         227 -------R---KHTSFT-DYYPRHLNTDGRRILF-SKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             -------E---ECCCCC-SSCEEEEEESSSCEEE-EETTEEEEECTTTCCEEE
T ss_pred             -------E---EeecCC-CcccccCcCCCCEEEE-EeCCEEEEEECCCCCEEE
Confidence                   1   222221 222346888 777665 446889999998876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=3.3e-05  Score=65.20  Aligned_cols=201  Identities=13%  Similarity=0.092  Sum_probs=129.6

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc----ccCCeeEEEEccCCcE
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----HYRAVTCLVFSEDGSF  136 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~  136 (451)
                      +.|.-||..++...... ....+.++++.++|.++++ +.+ .+.++|..+++.......    ....++.+.+.|+|++
T Consensus        40 ~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~i  116 (295)
T d2ghsa1          40 RELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGAL  116 (295)
T ss_dssp             TEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCE
T ss_pred             CEEEEEECCCCeEEEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCE
Confidence            78999998887765433 3467889999999987765 444 589999988875433221    1235788999999987


Q ss_pred             EEEeeCC----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc--
Q 012996          137 LISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--  210 (451)
Q Consensus       137 l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--  210 (451)
                      .++...+    +.-.+|.+..           ..... +...-.....++|++++. .++++-+..+.|..|++....  
T Consensus       117 w~~~~~~~~~~~~g~l~~~~~-----------g~~~~-~~~~~~~~Ng~~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         117 WIGTMGRKAETGAGSIYHVAK-----------GKVTK-LFADISIPNSICFSPDGT-TGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             EEEEEETTCCTTCEEEEEEET-----------TEEEE-EEEEESSEEEEEECTTSC-EEEEEETTTCEEEEEEBCTTTCC
T ss_pred             EEEeccccccccceeEeeecC-----------CcEEE-EeeccCCcceeeecCCCc-eEEEeecccceeeEeeecccccc
Confidence            6664332    2344555422           11111 112223456788888873 455666778889998874321  


Q ss_pred             ----eeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---C
Q 012996          211 ----LLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---G  280 (451)
Q Consensus       211 ----~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~  280 (451)
                          ......   .......++++.+|++.++....+.|..||...          +.+..+.-....+++++|-.   .
T Consensus       184 ~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G----------~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         184 PTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG----------NHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC----------CEEEEEECSCSBEEEEEEESTTSC
T ss_pred             cccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC----------cEeeEecCCCCceEEEEEeCCCCC
Confidence                111111   345678899999999888877888999999654          33455544456789999963   3


Q ss_pred             CEEEEEc
Q 012996          281 DLLISGS  287 (451)
Q Consensus       281 ~~l~s~~  287 (451)
                      .+++|..
T Consensus       254 ~LyvTta  260 (295)
T d2ghsa1         254 RLLVTSA  260 (295)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEEC
Confidence            3555544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.44  E-value=2.1e-05  Score=65.90  Aligned_cols=234  Identities=10%  Similarity=-0.028  Sum_probs=117.9

Q ss_pred             EECCC--CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CC-----cEEEeeCcchhhhh
Q 012996           87 AANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG-----CVRIWSLLTVFEEC  158 (451)
Q Consensus        87 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg-----~i~vwd~~~~~~~~  158 (451)
                      ..+|+  |+.++-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.|+.... ++     .|.+++...+....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  98887654 567999999877754 55567777889999999999885432 22     35566654321100


Q ss_pred             hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC------CcEEEEEcCCCceeeeeecccceeEEEECCCCCE
Q 012996          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (451)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (451)
                      ..     .................|+|++  +.++.....      ..+...+...+.....  .........+.+.+..
T Consensus        83 lt-----~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  153 (281)
T d1k32a2          83 IT-----YFSGKSTGRRMFTDVAGFDPDG--NLIISTDAMQPFSSMTCLYRVENDGINFVPL--NLGPATHILFADGRRV  153 (281)
T ss_dssp             CC-----CCCEEEETTEECSEEEEECTTC--CEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEE
T ss_pred             ee-----ecCCCccCccccccccccCCCC--CEEEEEEccCCCccceeeeeecCCCceeEEe--cCCccceeeecCCCeE
Confidence            00     0000001122334567788888  566554321      2244555544433221  1222222333333333


Q ss_pred             EEEEeCCCc-----------EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC--cEEEEeCCC
Q 012996          233 FYAGSRDGS-----------IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG--MVRVWDPIT  299 (451)
Q Consensus       233 l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg--~i~iwd~~~  299 (451)
                      ++....+..           .........          .......+........+++...+.....++  .|.++|+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g  223 (281)
T d1k32a2         154 IGRNTFELPHWKGYRGGTRGKIWIEVNSG----------AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG  223 (281)
T ss_dssp             EEESCSCCTTSTTCCSTTCCEEEEEEETT----------EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS
T ss_pred             EEeeccccceeeeeccCCcceeeeecccc----------ceeeccCCccccceeeeeccccceecccccccceEEEeCCC
Confidence            333222110           111111110          011222233344444555433333333333  477778776


Q ss_pred             CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996          300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (451)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~  344 (451)
                      +... .+..+. ......|+|||+.|+.. .++.+.++++.+++.
T Consensus       224 ~~~~-~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         224 KDLR-KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             CSCE-ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             CceE-EeecCC-CcccccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            6543 333322 22334699999998764 457788888776543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.40  E-value=0.00014  Score=67.27  Aligned_cols=307  Identities=14%  Similarity=0.151  Sum_probs=157.8

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCc--eEE--ecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHG--LAC--VGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~--~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~   80 (451)
                      |..++ .++.|.-.|..||+.+-++.........  ..+  ........+..++.+..+ +.|.-.|..+++........
T Consensus        69 vyv~t-~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~l~Alda~tG~~~w~~~~~  146 (560)
T d1kv9a2          69 IYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD-GRLIALDAKTGKAIWSQQTT  146 (560)
T ss_dssp             EEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-SEEEEEETTTCCEEEEEECS
T ss_pred             EEEEC-CCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC-CEEEEEECCCCcEEeccCcc
Confidence            34445 5788999999999999877432111000  000  000011123445555555 88888998888877654322


Q ss_pred             CCe--eEEEECC--CCcEEEEecc------CCCEEEEEcCCCcceeeeccc-----------------------------
Q 012996           81 EPI--KPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAH-----------------------------  121 (451)
Q Consensus        81 ~~v--~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~-----------------------------  121 (451)
                      ...  ..+.-.|  .+..++++..      .|.|.-+|.++|+.+..+..-                             
T Consensus       147 ~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (560)
T d1kv9a2         147 DPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLG  226 (560)
T ss_dssp             CTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHC
T ss_pred             CcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccccc
Confidence            211  1111112  1233444432      367999999999988776310                             


Q ss_pred             -cCCee-EEEEccCCcEEEEeeCC-------------------CcEEEeeCcchhhhhhhhcccccceecccCCc-----
Q 012996          122 -YRAVT-CLVFSEDGSFLISGSED-------------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHT-----  175 (451)
Q Consensus       122 -~~~v~-~~~~~~~~~~l~s~~~d-------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----  175 (451)
                       ...+. .+.+.+...+++.+..+                   ..|.-.|++++...         .......|.     
T Consensus       227 ~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~---------W~~Q~~~~D~wd~d  297 (560)
T d1kv9a2         227 GGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA---------WHYQVTPGDSWDFT  297 (560)
T ss_dssp             EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE---------EEEESSTTCCSCCC
T ss_pred             CCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCcccee---------EEEecccccccccc
Confidence             11121 24555655555443221                   12334444332111         011111111     


Q ss_pred             --CceeEEEEeecCC-eeEEEEeeCCCcEEEEEcCCCceeeeeeccc---------------------------------
Q 012996          176 --LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS---------------------------------  219 (451)
Q Consensus       176 --~~i~~i~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------  219 (451)
                        ....-..+..++. ...++.++.+|.+.++|..+++++.......                                 
T Consensus       298 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~  377 (560)
T d1kv9a2         298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (560)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             ccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecc
Confidence              1111112222332 2467788999999999999998876543110                                 


Q ss_pred             ----ceeEEEECCCCCEEEEEeCC------------------------------------CcEEEEEccCCCCCCCCCCc
Q 012996          220 ----VIDAIALDPAEHVFYAGSRD------------------------------------GSIYIAALNAESPSTSSYGM  259 (451)
Q Consensus       220 ----~i~~~~~~~~~~~l~~~~~d------------------------------------g~i~i~d~~~~~~~~~~~~~  259 (451)
                          .-...+++|+...+++...+                                    |.|.-+|+.+++.       
T Consensus       378 ~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~-------  450 (560)
T d1kv9a2         378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-------  450 (560)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-------
T ss_pred             ccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeE-------
Confidence                00134566666666665433                                    2333444444321       


Q ss_pred             eeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe-eEEEEEecCc-eeeeccCCC
Q 012996          260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRRPL-YLNLGSFSN  332 (451)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~~~s~d~  332 (451)
                        +-... ...+..+-.++- +.++++|+.||.++-+|..+|+.+-+++...+.. .-+.+..+|+ ||+..+..|
T Consensus       451 --~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g  523 (560)
T d1kv9a2         451 --AWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG  523 (560)
T ss_dssp             --EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             --eeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence              11110 011111111223 6788889999999999999999999988643311 2256677885 665544333

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.31  E-value=0.00039  Score=64.36  Aligned_cols=111  Identities=12%  Similarity=0.109  Sum_probs=61.4

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCc------eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~   77 (451)
                      .|..++ .++.|.-.|..||+.+-++.........      ...-.  .......+..+..+ +.+.-.|..+++.....
T Consensus        79 ~vyv~t-~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~~t~~-g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSA-SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG--VALWKGKVYVGAWD-GRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEEC-GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEC-CCCeEEEEeCCCCCeEEEeCCCCCccccccccccccccc--ceEECCcEEEEecc-cceeeeccccccceecc
Confidence            345556 6889999999999999887532211000      00000  00112233344445 78888898888876543


Q ss_pred             cC---CCCeeEEEECC--CCcEEEEecc------CCCEEEEEcCCCcceeee
Q 012996           78 LP---AEPIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKW  118 (451)
Q Consensus        78 ~~---~~~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~  118 (451)
                      ..   ...-..+.-.|  -+..+++|+.      .|.|+-+|..+|+.+..+
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            21   11101111111  1334555432      467999999999988765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=0.00018  Score=61.93  Aligned_cols=228  Identities=10%  Similarity=0.007  Sum_probs=127.3

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC-----------------CccEEEE
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----------------SGSILYW   66 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----------------~g~i~vw   66 (451)
                      +++... .++.|.+-|+.+.+..+.+....  ...+..+...-.|...|++..+..                 .+.+.+.
T Consensus       102 lFVNDk-an~RVAvIdl~~fkt~kIi~iPn--~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2         102 LFMNDK-ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEET-TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             EEEEcC-CCceEEEEECcceeeeEEEecCC--CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            445555 88999999999988765443211  111222110011222333322221                 1456788


Q ss_pred             ECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCC---------------EEEE-----------------------E
Q 012996           67 SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD---------------IYMW-----------------------E  108 (451)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------------i~iw-----------------------d  108 (451)
                      |.++.+......-......++++++|+++++.+.+..               +.++                       |
T Consensus       179 D~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD  258 (459)
T d1fwxa2         179 DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD  258 (459)
T ss_dssp             ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred             ecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeec
Confidence            9998888777665667889999999999988764311               3333                       3


Q ss_pred             cCCC---cceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996          109 VASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (451)
Q Consensus       109 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (451)
                      ....   ..+..+.. ......+.++|||+++++++ .+.++.|+|+++..............+..-......-...+|.
T Consensus       259 ~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd  337 (459)
T d1fwxa2         259 GRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFD  337 (459)
T ss_dssp             CSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEEC
T ss_pred             ccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccC
Confidence            3221   11222221 23356789999999987655 4889999999765433211111111111111122222334554


Q ss_pred             ecCCeeEEEEeeCCCcEEEEEcCCC----------ceeeeeecccceeEEE------ECCCCCEEEEEe
Q 012996          185 YGGVSATIVSASEDRTCKVWSLLKG----------RLLRNIVFPSVIDAIA------LDPAEHVFYAGS  237 (451)
Q Consensus       185 ~~~~~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~i~~~~------~~~~~~~l~~~~  237 (451)
                      ..|  +...|.--|..|.-|++...          ..+..+.....+-.+.      ..|+|++|++..
T Consensus       338 ~~g--~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         338 GRG--NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             TTS--EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCc--eEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            443  66666778999999998432          3344444323333332      367899998875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.30  E-value=0.00027  Score=65.32  Aligned_cols=48  Identities=17%  Similarity=0.257  Sum_probs=36.4

Q ss_pred             CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCc-eeee
Q 012996          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL-YLNL  327 (451)
Q Consensus       280 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~-~l~~  327 (451)
                      +.++++|+.||.++-+|.++|+.+-+++.... .-.-+.|..||+ |+++
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            67888899999999999999999998875432 122366777885 5544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.28  E-value=0.00026  Score=60.90  Aligned_cols=242  Identities=10%  Similarity=0.019  Sum_probs=148.6

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCC------------------------------------ceEEecceEe
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH------------------------------------GLACVGQRFL   47 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------------------------------------~v~~~~~~~~   47 (451)
                      .+.||+ ..|.|+|+-+.+++.++.+.-+...+.                                    ........+.
T Consensus        15 ~f~SgG-~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T   93 (459)
T d1fwxa2          15 GFWSSG-QSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   93 (459)
T ss_dssp             EEECCB-TTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE
T ss_pred             EEeeCC-ccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc
Confidence            466777 999999999999998887653321100                                    0000010022


Q ss_pred             ---eccCcccCCCCCCccEEEEECCCCceee--eecCCCCeeEEEECC--CCcEEEEeccC------------------C
Q 012996           48 ---ASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANS--HGTYIAGGGQS------------------G  102 (451)
Q Consensus        48 ---~~~~~l~~~~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~--~~~~l~~~~~d------------------g  102 (451)
                         +||+++++....++.|.+-|++..+...  .......+..++..+  +-.|++.++.+                  +
T Consensus        94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             CCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence               4899999988877999999999887643  444556777777754  55677776553                  2


Q ss_pred             CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC---------------cEEEeeCcchhhhhhhh------
Q 012996          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---------------CVRIWSLLTVFEECESQ------  161 (451)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~------  161 (451)
                      .+.++|..+.+....... .+....+.++++|+++++.+.+.               .+.++++..........      
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            266788888777665543 34566899999999998876542               24445543221110000      


Q ss_pred             ---------cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc------------eeeeeecccc
Q 012996          162 ---------RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------------LLRNIVFPSV  220 (451)
Q Consensus       162 ---------~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~  220 (451)
                               ......+..+.. ......+.++|++. ..++++..+.++.++|++.-.            ........-.
T Consensus       253 gV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGK-yi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKK-HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSS-EEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             CceeecccccCCcceeEEEec-CCCCCceEECCCCC-EEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence                     001111111111 12234678888884 445566679999999996421            1112223445


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996          221 IDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (451)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (451)
                      ....+|+..|....+-.-|..|.-|++..
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccccCCCceEEEEeeccceEEEEecch
Confidence            56778988886566667899999999854

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.26  E-value=0.001  Score=61.58  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             eecCCCCCCeEEEEC-ccCceeeeeecCCCC-----------CCceEEecceEeec----cCcccCCCCCCccEEEEECC
Q 012996            6 ASSSVADTGIGCWDL-ESGAEQLRYKSCASP-----------PHGLACVGQRFLAS----SQLREQPSASSGSILYWSWS   69 (451)
Q Consensus         6 ~s~~~~dg~i~vwd~-~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~   69 (451)
                      ++++ .++.|...|. .+|+.+-++......           .+++.     +.++    ...++.+..+ +.|.-.|..
T Consensus        67 ~~t~-~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~-----~~~~~~~~~~~v~~~t~d-g~l~Alda~  139 (596)
T d1w6sa_          67 IHTS-FPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA-----YWPGDGKTPALILKTQLD-GNVAALNAE  139 (596)
T ss_dssp             EECS-TTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE-----EECCCSSSCCEEEEECTT-SEEEEEETT
T ss_pred             EeeC-CCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeE-----EecCCCCCceEEEEEeCC-CCeEeeccc
Confidence            3444 4677888886 589999887532211           12222     3332    2235556666 888889999


Q ss_pred             CCceeeeecCCC--CeeEEEECC--CCcEEEEecc------CCCEEEEEcCCCcceeeec
Q 012996           70 KPQVEVKSLPAE--PIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWH  119 (451)
Q Consensus        70 ~~~~~~~~~~~~--~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~  119 (451)
                      +++........+  .-..+.-+|  -+..+++|..      .|.|+-+|+.+|+++..+.
T Consensus       140 tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             cCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            998876643211  001111112  1344555543      4889999999999987653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=0.00074  Score=55.59  Aligned_cols=236  Identities=11%  Similarity=-0.038  Sum_probs=139.7

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec-cCCCEEEEEcCCCc----ceeeeccccCCeeEEEEccCCc
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGS  135 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~  135 (451)
                      ..|+-.++++............+..++|.+..+.|.... ..+.|.-.++....    ....+......+.++++.+-+.
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            468888888777655555566788999998777666543 45567666654321    1122233335567888877444


Q ss_pred             EEE-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCcee
Q 012996          136 FLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLL  212 (451)
Q Consensus       136 ~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~  212 (451)
                      .|. +-...+.|.+.++..           ...............++++.|..  .+++...  ..+.|.-.++......
T Consensus        90 ~lY~~d~~~~~I~v~~~~g-----------~~~~~~~~~~~~~P~~l~vd~~~--g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKG-----------VKRKTLFRENGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             EEEEEETTTTEEEEEETTS-----------SSEEEEEECTTCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             eEEEEecCCCEEEeEecCC-----------ceEEEEEcCCCCCcceEEEEccc--CeEEEeccCCCcceeEeccCCCcee
Confidence            444 445567899999843           11222233344567788888754  3444333  3445666676443332


Q ss_pred             eeee-cccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996          213 RNIV-FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (451)
Q Consensus       213 ~~~~-~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg  290 (451)
                      .... .-.....+++++.++.|+.+ ...+.|...++.....       ..+...........+|++..+.++.+-..++
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-------~~~~~~~~~~~~p~~lav~~~~ly~td~~~~  229 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINE  229 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-------EEEEeCCCcccccEEEEEECCEEEEEECCCC
Confidence            2222 22457889999977776665 5567899999876431       2222222333445677776444555555678


Q ss_pred             cEEEEeCCCCceEEEeecCCCCeeEE
Q 012996          291 MVRVWDPITHNIVRMFRLAKGPVNNI  316 (451)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (451)
                      .|...+..++.....+......+.++
T Consensus       230 ~I~~~~~~~g~~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         230 AIFSANRLTGSDVNLLAENLLSPEDM  255 (266)
T ss_dssp             EEEEEETTTCCCCEEEECSCSCCCCE
T ss_pred             eEEEEECCCCcceEEEEcCCCCceEE
Confidence            88888888877666665544433333

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.23  E-value=0.0014  Score=60.57  Aligned_cols=49  Identities=22%  Similarity=0.401  Sum_probs=37.2

Q ss_pred             CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEEecCc-eeeec
Q 012996          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPL-YLNLG  328 (451)
Q Consensus       280 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~-~l~~~  328 (451)
                      +.++++|+.||.++-+|..+|+.+-+++...+. -.-+.|..+|+ |++..
T Consensus       497 gglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            678888999999999999999999998854332 12267778885 55543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.18  E-value=0.00033  Score=61.48  Aligned_cols=137  Identities=12%  Similarity=0.038  Sum_probs=82.1

Q ss_pred             eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--CCCCeeEEEECCCC
Q 012996           15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHG   92 (451)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~   92 (451)
                      +.+||..+++-...-.....+........  +.++|++++.++.+...+.+||..+........  ....-.+.+..+||
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEE--EecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            67899988765432211111212122233  788999999988776899999988766543221  12334567778899


Q ss_pred             cEEEEeccC------CCEEEEEcCCCcceee--e-------cccc-----CCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996           93 TYIAGGGQS------GDIYMWEVASGRLLKK--W-------HAHY-----RAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (451)
Q Consensus        93 ~~l~~~~~d------g~i~iwd~~~~~~~~~--~-------~~~~-----~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  152 (451)
                      ++++.|+.+      ..+.+||..+.+-...  .       ..+.     ..-..+...++++.++.++.++.+.+++..
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence            999998753      3589999877642211  0       0010     011122334567777777777777777765


Q ss_pred             c
Q 012996          153 T  153 (451)
Q Consensus       153 ~  153 (451)
                      +
T Consensus       212 ~  212 (387)
T d1k3ia3         212 S  212 (387)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.0012  Score=54.10  Aligned_cols=219  Identities=8%  Similarity=-0.055  Sum_probs=131.7

Q ss_pred             CCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhh
Q 012996           80 AEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEE  157 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~  157 (451)
                      ...+..|+|.+..+.+... ..++.|+..++..+.....+......+.++++..-+..|+ +-...+.|.+.++...   
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---  111 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---  111 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc---
Confidence            3457889998877766654 4557788888876555444444445688999986454554 5555678999988431   


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCc--EEEEEcCCCceeeeee-cccceeEEEECCCCCEE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRT--CKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF  233 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l  233 (451)
                            .  ..............+++.|..  .+++ +-...+.  |.--++.......... .-.....+++++.++.|
T Consensus       112 ------~--~~~l~~~~l~~p~~l~vdp~~--g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~l  181 (263)
T d1npea_         112 ------Q--RRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL  181 (263)
T ss_dssp             ------S--CEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             ------e--EEEEecccccCCcEEEEeccc--CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEE
Confidence                  1  111122233567888888765  3444 4322233  4444554332222222 22456789999887777


Q ss_pred             EEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC-CC
Q 012996          234 YAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-KG  311 (451)
Q Consensus       234 ~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  311 (451)
                      +.+ ...+.|...++....         ....+.+. ....+|++..+.+..+-...+.|...|..+++.+..+..+ ..
T Consensus       182 Yw~d~~~~~I~~~~~~g~~---------~~~v~~~~-~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~  251 (263)
T d1npea_         182 CWVDAGTHRAECLNPAQPG---------RRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT  251 (263)
T ss_dssp             EEEETTTTEEEEEETTEEE---------EEEEEECC-CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC
T ss_pred             EEEeCCCCEEEEEECCCCC---------eEEEECCC-CCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCC
Confidence            665 456789999887642         11122222 2345777764445555556788999999988887765433 33


Q ss_pred             CeeEEEEEec
Q 012996          312 PVNNILVVRR  321 (451)
Q Consensus       312 ~v~~l~~s~~  321 (451)
                      ...++.+.++
T Consensus       252 ~~~gi~v~~~  261 (263)
T d1npea_         252 RLYGITIALS  261 (263)
T ss_dssp             CCCCEEEECS
T ss_pred             CcceEEEeCC
Confidence            4556666553

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=0.0027  Score=51.60  Aligned_cols=190  Identities=11%  Similarity=0.120  Sum_probs=124.8

Q ss_pred             EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeecccc--
Q 012996           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHY--  122 (451)
Q Consensus        46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~--  122 (451)
                      .+|..+.+|.-+.  .++.++|+++.+........++|.--.|-.+.. |+..+. ..|+-|++... .+.+.+..|.  
T Consensus        70 MhP~~~IiALrag--~~LQiFnletK~klks~~~~e~VvfWkWis~~~-L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L  145 (327)
T d1utca2          70 MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVTD-NAVYHWSMEGESQPVKMFDRHSSL  145 (327)
T ss_dssp             ECSSSSEEEEEET--TEEEEEETTTTEEEEEEECSSCCCEEEESSSSE-EEEECS-SEEEEEESSSSCCCEEEEECCGGG
T ss_pred             cCCCCcEEEEecC--CeEEEEehhHhhhhceEEcCCCcEEEEecCCCE-EEEEcC-CceEEEcccCCCCchhhhhhcccc
Confidence            5688887777664  699999999988877766778998888875544 544443 47999999543 4566665554  


Q ss_pred             --CCeeEEEEccCCcEEEEee-------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe-eEE
Q 012996          123 --RAVTCLVFSEDGSFLISGS-------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATI  192 (451)
Q Consensus       123 --~~v~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l  192 (451)
                        ..|..-..+++.++++..|       -.|.+.+|..+.            ...+.+.+|...-..+.+..+... ..+
T Consensus       146 ~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er------------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf  213 (327)
T d1utca2         146 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------------KVSQPIEGHAASFAQFKMEGNAEESTLF  213 (327)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT------------TEEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred             cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc------------CcCccccceeeeeEEEEcCCCCCCceEE
Confidence              3566677788888876432       136788898843            234556666655544443222111 222


Q ss_pred             EEe---eCCCcEEEEEcCCCc---ee-----eeeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          193 VSA---SEDRTCKVWSLLKGR---LL-----RNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       193 ~s~---~~d~~i~iwd~~~~~---~~-----~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      +.+   ...+.+.+.++....   ..     ..+..     ..-..++..++.-..++.-+.-|.|++||+.++.
T Consensus       214 ~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         214 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             EEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence            222   223678888886521   11     11111     2345678888988999999999999999999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.92  E-value=0.00066  Score=59.43  Aligned_cols=274  Identities=11%  Similarity=0.051  Sum_probs=137.0

Q ss_pred             eccCcccCCCCCC----------ccEEEEECCCCceee----eecCCCCeeEEEECCCCcEEEEeccC-CCEEEEEcCCC
Q 012996           48 ASSQLREQPSASS----------GSILYWSWSKPQVEV----KSLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVASG  112 (451)
Q Consensus        48 ~~~~~l~~~~~d~----------g~i~vw~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~  112 (451)
                      .+|+.++.++...          ..+.+||..++....    ...+.......++.++|.+++.|+.+ ..+.+||..+.
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence            4566666655321          147799998776432    22233345567889999999998765 57999998776


Q ss_pred             cceee--eccccCCeeEEEEccCCcEEEEeeCC------CcEEEeeCcchhhhhhhhcccccceecccCCcC-----cee
Q 012996          113 RLLKK--WHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-----RIT  179 (451)
Q Consensus       113 ~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~  179 (451)
                      .-...  +... ..-...+..+|+++++.|+.+      ..+.+||..+..-.....  ..........+..     .-.
T Consensus       109 ~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~~  185 (387)
T d1k3ia3         109 SWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN--AKVNPMLTADKQGLYRSDNHA  185 (387)
T ss_dssp             EEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT--SCSGGGCCCCTTGGGTTTCSC
T ss_pred             ccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCC--Ccccccccccccceeecccee
Confidence            44321  1111 122456777899999988753      358899986531100000  0000000000000     000


Q ss_pred             EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--c-----c--cceeEEEE-CCCCCEEEEEeCCC--------c
Q 012996          180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--F-----P--SVIDAIAL-DPAEHVFYAGSRDG--------S  241 (451)
Q Consensus       180 ~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~-----~--~~i~~~~~-~~~~~~l~~~~~dg--------~  241 (451)
                      .+...+++  ..++.+...+.+.+++..+......-.  .     .  ..-.++.+ ..+++.++.|+...        .
T Consensus       186 ~~~~~~~G--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~  263 (387)
T d1k3ia3         186 WLFGWKKG--SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN  263 (387)
T ss_dssp             CEEECGGG--CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCC
T ss_pred             EEEEeCCC--CEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccce
Confidence            11122333  667777777778888877664432211  0     1  01122222 33566666665321        2


Q ss_pred             EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC-----------cEEEEeCCCCceEEEeec-
Q 012996          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-----------MVRVWDPITHNIVRMFRL-  308 (451)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~-  308 (451)
                      ..+.++.......  ..+.....+. +...-.+....+ +++++.|+.++           ++.+||..+.+-. .+.. 
T Consensus       264 ~~~~~~~~~~~~~--~~~~~~~~~p-~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~-~~~~~  339 (387)
T d1k3ia3         264 AHIITLGEPGTSP--NTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPN  339 (387)
T ss_dssp             EEEEECCSTTSCC--EEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCCC
T ss_pred             eecccccccccCC--Cceeeccccc-cccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE-ECCCC
Confidence            3333333221110  0001111111 111122344446 78888888531           4788998765422 2211 


Q ss_pred             CCCC--eeEEEEEecCceeeeccC
Q 012996          309 AKGP--VNNILVVRRPLYLNLGSF  330 (451)
Q Consensus       309 ~~~~--v~~l~~s~~~~~l~~~s~  330 (451)
                      ....  -......+||+.|+.|+.
T Consensus       340 ~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         340 SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEEECCCCEEEEEeCC
Confidence            1111  123345789999988874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=0.0036  Score=51.20  Aligned_cols=199  Identities=9%  Similarity=-0.115  Sum_probs=116.3

Q ss_pred             ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcce
Q 012996           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLL  115 (451)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~  115 (451)
                      .+..++  |.+..+.+..+...++.|...+++........ .....+.++++..-+..| .+-...+.|.+.++......
T Consensus        37 ~~~~ld--~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          37 VIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEE--EEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            355566  88777777666554488888888765544333 233578899997655544 45556678999998655443


Q ss_pred             eeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996          116 KKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (451)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  194 (451)
                      ..+......+..+++.|...+++.... .+..+|+....         ............-....++++.+... .+.++
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~---------dG~~~~~i~~~~~~~P~glaiD~~~~-~lYw~  184 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM---------DGTNRRILAQDNLGLPNGLTFDAFSS-QLCWV  184 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET---------TSCCCEEEECTTCSCEEEEEEETTTT-EEEEE
T ss_pred             EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecC---------CCCCceeeeeecccccceEEEeecCc-EEEEE
Confidence            333333467889999996666654432 22334443311         11111111122234557888877652 34455


Q ss_pred             eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-eCCCcEEEEEccCC
Q 012996          195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAE  250 (451)
Q Consensus       195 ~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~  250 (451)
                      -...+.|...|+........+.......++++.  +..|+.. ...+.|...|..++
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             eCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            456788999998654433333322334567765  4445444 46678888888765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.87  E-value=0.0042  Score=50.45  Aligned_cols=255  Identities=10%  Similarity=0.107  Sum_probs=151.1

Q ss_pred             ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  140 (451)
                      ..|.+-|+.++....+..-  .--+.-.+|..+.||.-+ ...+.++|+++.+.++.+.- ..+|.--.|-.+. .|+-.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi--~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lV  119 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV  119 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC--CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEE
T ss_pred             ceEEEEECCCCCcceeccc--chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEE
Confidence            6788889876654443322  123445689888888766 45799999999988887753 4567677787544 45544


Q ss_pred             eCCCcEEEeeCcchhhhhhhhcccccceecccCCc----CceeEEEEeecCCeeEEEEee-------CCCcEEEEEcCCC
Q 012996          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT----LRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG  209 (451)
Q Consensus       141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~  209 (451)
                      +. ..|.-|+++.          ...+.+.+..|.    ..|..-..+++.  ++++..+       -.|.+.+|....+
T Consensus       120 T~-taVYHW~~~g----------~s~P~k~fdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         120 TD-NAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             CS-SEEEEEESSS----------SCCCEEEEECCGGGTTCEEEEEEECTTS--CEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             cC-CceEEEcccC----------CCCchhhhhhcccccCceEEEEEECCCC--CEEEEEeEecCCCceeEEEEEEEeccC
Confidence            44 4799999943          122344444443    344444444444  6665433       2367889988655


Q ss_pred             ceeeeee-cccceeEEEECC--CC-CEEEEE---eCCCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEec
Q 012996          210 RLLRNIV-FPSVIDAIALDP--AE-HVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST  279 (451)
Q Consensus       210 ~~~~~~~-~~~~i~~~~~~~--~~-~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~  279 (451)
                      .. +.+. |...-..+.+..  .. ..|+.+   ...+++++.++.........+..+....+.   .-..-..+|..++
T Consensus       187 ~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~  265 (327)
T d1utca2         187 VS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE  265 (327)
T ss_dssp             EE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET
T ss_pred             cC-ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec
Confidence            32 2222 222222222211  11 122222   233689999988743222222112221111   1234567788899


Q ss_pred             -CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCc
Q 012996          280 -GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (451)
Q Consensus       280 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i  334 (451)
                       ...+..-+.-|.|.+||+.++.++..-+-...+|...+-+.+..-+++...+|.+
T Consensus       266 kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         266 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence             8888889999999999999999999888777777755555544444444444443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.71  E-value=0.0068  Score=55.68  Aligned_cols=239  Identities=10%  Similarity=0.029  Sum_probs=131.3

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCC-CceEEecceEeeccCcccCCC-----CCCccEEEEECCCCceeeeec
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPP-HGLACVGQRFLASSQLREQPS-----ASSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~-----~d~g~i~vw~~~~~~~~~~~~   78 (451)
                      |+.++ .||.+.--|.++|+.+.......... ..++...  ...++..++.++     .. |.|.-+|+.+++...+..
T Consensus       118 i~~~~-~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p--~v~~~~vivg~~~~~~~~~-G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         118 IVKKQ-ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FVAKDTVLMGCSGAELGVR-GAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEEECBCGGGTCC-CEEEEEETTTCCEEEEEE
T ss_pred             EEEEe-CCCcEEeeehhhhhhhccccccccccccceeecC--eEeCCeEEEeecccccccc-CcEEEEECCCCcEEEEEe
Confidence            45566 78999999999999887665332111 1111111  222333333222     23 789999999999876532


Q ss_pred             CC--------------------------------------CCe-eEEEECCCCcEEEEecc----------------CCC
Q 012996           79 PA--------------------------------------EPI-KPIAANSHGTYIAGGGQ----------------SGD  103 (451)
Q Consensus        79 ~~--------------------------------------~~v-~~~~~~~~~~~l~~~~~----------------dg~  103 (451)
                      ..                                      ..+ ...++.+....+..+..                ...
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence            11                                      111 23455666666555433                245


Q ss_pred             EEEEEcCCCcceeeeccccCCe---------eEEEEccCCc---EEEEeeCCCcEEEeeCcchhhhhhhhc---------
Q 012996          104 IYMWEVASGRLLKKWHAHYRAV---------TCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQR---------  162 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~---------  162 (451)
                      +.-.|.++|+.+..++.+...+         .......+++   .++.++.+|.+.++|..+++.......         
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            7788999999887765332211         1122222443   467788899999999877543210000         


Q ss_pred             ---ccccce--------------e----cccCCcCceeEEEEeecCCeeEEEEee-------------------------
Q 012996          163 ---ASHLYL--------------H----SFTGHTLRITDIVIGYGGVSATIVSAS-------------------------  196 (451)
Q Consensus       163 ---~~~~~~--------------~----~~~~~~~~i~~i~~~~~~~~~~l~s~~-------------------------  196 (451)
                         .....+              .    ...++.-.  ..+++|..  ..++...                         
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~--~~a~dP~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQG--VDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSC--BCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccc--cceECCCC--ceEEEeccccccccccccccccCCccccccce
Confidence               000000              0    00111100  12233322  2222111                         


Q ss_pred             ------------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          197 ------------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       197 ------------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                                  ..|.|.-+|+.+++.+..........+-.+.-.+.++++|+.||.++.+|.++++
T Consensus       430 ~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCc
Confidence                        1257888999999988877754433322223356788889999999999999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.58  E-value=0.011  Score=49.92  Aligned_cols=201  Identities=12%  Similarity=0.202  Sum_probs=121.2

Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc------CCcEEEEeeC--CC--cEEEeeCcchhhhhh
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE------DGSFLISGSE--DG--CVRIWSLLTVFEECE  159 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~~--dg--~i~vwd~~~~~~~~~  159 (451)
                      |+..+++.....+-|++||+ .|+.+..+.  .+.++.+..-.      ...-++.++.  ++  .|.+|.+...     
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~-----  109 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-----  109 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT-----
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc-----
Confidence            45566766666777999998 488777664  34555554331      2223455542  22  5778877421     


Q ss_pred             hhcccccceecccC-------CcCceeEEEEeec--CCeeEEEEeeCCCcEEEEEcC---CC----ceeeeeecccceeE
Q 012996          160 SQRASHLYLHSFTG-------HTLRITDIVIGYG--GVSATIVSASEDRTCKVWSLL---KG----RLLRNIVFPSVIDA  223 (451)
Q Consensus       160 ~~~~~~~~~~~~~~-------~~~~i~~i~~~~~--~~~~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~i~~  223 (451)
                           ...+..+..       -...+.++|+..+  ...-++++...+|.+..|.+.   .+    +.++.+..+..+..
T Consensus       110 -----~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EG  184 (353)
T d1h6la_         110 -----NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEG  184 (353)
T ss_dssp             -----TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEE
T ss_pred             -----ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccce
Confidence                 111111111       1224677887443  222367778889999888763   22    45667778889999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec--cCCcceeEEEEec----CCEEEEEc-CCCcEEEEe
Q 012996          224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DHSKAVTCLAYST----GDLLISGS-EDGMVRVWD  296 (451)
Q Consensus       224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~----~~~l~s~~-~dg~i~iwd  296 (451)
                      |.+++....|+++-.+..|+.++........    ...+....  .....+-.|+.-.    ..||++++ .+++..|||
T Consensus       185 CVvDde~~~LyisEE~~Giw~~~a~~~~~~~----~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         185 MAADDEYGSLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSTTSCSC----CEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EEEeCCCCcEEEecCccceEEEEeccCCCcc----ceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            9999999999999888777777665332111    12222221  2356777777543    23555544 578899999


Q ss_pred             CCC-CceEEEee
Q 012996          297 PIT-HNIVRMFR  307 (451)
Q Consensus       297 ~~~-~~~~~~~~  307 (451)
                      ..+ .+.+..|.
T Consensus       261 r~~~~~~~g~F~  272 (353)
T d1h6la_         261 RQGQNKYVADFQ  272 (353)
T ss_dssp             SSTTCCEEEEEE
T ss_pred             cCCCccccceEE
Confidence            876 36666665

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.50  E-value=0.023  Score=51.94  Aligned_cols=241  Identities=9%  Similarity=0.100  Sum_probs=133.2

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCC-ceEEecceEeeccCcccCC-----CCCCccEEEEECCCCceeeeec
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPH-GLACVGQRFLASSQLREQP-----SASSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~-----~~d~g~i~vw~~~~~~~~~~~~   78 (451)
                      ++.+. .|+.|.-.|..+|+.+..+........ .+....  ...++..++-.     +.. |.|.-+|..+++...+..
T Consensus       120 v~~~~-~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p--~v~~~~vivg~~~~~~~~~-G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         120 VYVGT-LDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP--RVVKGKVIIGNGGAEYGVR-GFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             EEEEC-TTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC--EEETTEEEECCBCTTTCCB-CEEEEEETTTCCEEEEEE
T ss_pred             EEEEe-CCCEEEEEECCCCcEEeccCccCcccceeeeeee--eeecCcccccccceecccc-ceEEEEECCCceEEeeee
Confidence            55566 689999999999999987765432221 111111  12223222221     122 789999999999876643


Q ss_pred             CC-------------------------------CCe-eEEEECCCCcEEEEecc-------------------CCCEEEE
Q 012996           79 PA-------------------------------EPI-KPIAANSHGTYIAGGGQ-------------------SGDIYMW  107 (451)
Q Consensus        79 ~~-------------------------------~~v-~~~~~~~~~~~l~~~~~-------------------dg~i~iw  107 (451)
                      ..                               ..+ ..+++.+...++..+..                   ...|.-.
T Consensus       196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl  275 (560)
T d1kv9a2         196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (560)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence            10                               011 12455666665544321                   2347777


Q ss_pred             EcCCCcceeeeccccCCee---------EEEEccCC---cEEEEeeCCCcEEEeeCcchhhhhhhhccccc---------
Q 012996          108 EVASGRLLKKWHAHYRAVT---------CLVFSEDG---SFLISGSEDGCVRIWSLLTVFEECESQRASHL---------  166 (451)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~---------~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---------  166 (451)
                      |+.+++....++.....+.         -+....++   ..++.++.+|.+.++|..++............         
T Consensus       276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence            8889988766643222221         12222233   35778889999999998775432111100000         


Q ss_pred             --cee------------cccCCcCc--eeEEEEeecCCeeEEEEee----------------------------------
Q 012996          167 --YLH------------SFTGHTLR--ITDIVIGYGGVSATIVSAS----------------------------------  196 (451)
Q Consensus       167 --~~~------------~~~~~~~~--i~~i~~~~~~~~~~l~s~~----------------------------------  196 (451)
                        ...            ...+-.+.  -...+++|+.  ..++...                                  
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  433 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT--GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCC--CeeecccccccceeeccccccccccccccccCcccccCCCC
Confidence              000            00000000  0122233332  2222211                                  


Q ss_pred             --CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          197 --EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       197 --~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                        ..|.+.-||+.+++.+..+.......+-.+.-.+.++++|+.||.++.+|..+++
T Consensus       434 ~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         434 AVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             GGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence              1257888999999999888765554433334467788899999999999999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.02  Score=46.60  Aligned_cols=224  Identities=9%  Similarity=-0.054  Sum_probs=127.1

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-----eeeeec
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-----VEVKSL   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-----~~~~~~   78 (451)
                      +|++.+   ..|+-.++.+.....-+.    ....+..++  |.+..+.+.-+....+.|.-.+++...     ......
T Consensus         4 Ll~s~~---~~I~~~~l~~~~~~~~~~----~~~~~~~id--~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           4 LFFTNR---HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             EEEECB---SSEEEEETTSCCCEEEEC----SCSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             EEEECC---CeEEEEECCCCcceeeeC----CCCceEEEE--EEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC
Confidence            444444   359889988655443322    234456677  888777766654444677766665321     111222


Q ss_pred             CCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee--CCCcEEEeeCcchh
Q 012996           79 PAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVF  155 (451)
Q Consensus        79 ~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~  155 (451)
                      ....+..+++.+.+..| .+-...+.|.+.++........+.........++++|...+|+...  ..+.|.-.++..  
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--  152 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--  152 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--
Confidence            23467788887655544 4445567899999876655554555556788999998555555433  234565555522  


Q ss_pred             hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCE
Q 012996          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHV  232 (451)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~  232 (451)
                               ..........-....++++.+... .+.++-...+.|...++...........   .....++++.  +..
T Consensus       153 ---------s~~~~l~~~~~~~p~gl~iD~~~~-~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~  220 (266)
T d1ijqa1         153 ---------VDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDK  220 (266)
T ss_dssp             ---------CCEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTE
T ss_pred             ---------CceecccccccceeeEEEeecccc-EEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCE
Confidence                     111111222334567888887652 4555556678899999865433222221   1234566665  344


Q ss_pred             EEEE-eCCCcEEEEEccCC
Q 012996          233 FYAG-SRDGSIYIAALNAE  250 (451)
Q Consensus       233 l~~~-~~dg~i~i~d~~~~  250 (451)
                      |+.. ..++.|+..+..++
T Consensus       221 ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         221 VFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEETTTTEEEEEETTTC
T ss_pred             EEEEECCCCeEEEEECCCC
Confidence            4444 46677777776654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.35  E-value=0.024  Score=51.96  Aligned_cols=53  Identities=15%  Similarity=0.220  Sum_probs=40.7

Q ss_pred             CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          199 RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       199 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      |.+.-||+.+++.+.......+...=..+-.+.++++|+.||.++.+|..+++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence            46888999999988887755443322233467888899999999999999985

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.29  E-value=0.042  Score=50.50  Aligned_cols=241  Identities=11%  Similarity=0.073  Sum_probs=132.9

Q ss_pred             EEeecCCCCCCeEEEECccCceeeeeecCCCCCC-ceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeeec
Q 012996            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH-GLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSL   78 (451)
Q Consensus         4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~~   78 (451)
                      +|+.++ .|+.|.--|..||+.+..+.....+.. .++.-.  ....+..++-.+.    ..|.|+-+|..+++...+..
T Consensus       123 ~v~~~t-~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P--~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         123 LILKTQ-LDGNVAALNAETGETVWKVENSDIKVGSTLTIAP--YVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEe-CCCCeEeeccccCceeccccccccccccccccCC--cEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            466677 789999999999999988754321111 222111  2223333332221    12889999999999876532


Q ss_pred             CC--------------------------------------C-CeeEEEECCCCcEEEEecc----------------CCC
Q 012996           79 PA--------------------------------------E-PIKPIAANSHGTYIAGGGQ----------------SGD  103 (451)
Q Consensus        79 ~~--------------------------------------~-~v~~~~~~~~~~~l~~~~~----------------dg~  103 (451)
                      ..                                      . .-..+++.+...++..+..                ...
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence            10                                      0 1123455566666555432                234


Q ss_pred             EEEEEcCCCcceeeecc--cc-------CCeeEEEE-ccCC---cEEEEeeCCCcEEEeeCcchhhhhhhhcc-------
Q 012996          104 IYMWEVASGRLLKKWHA--HY-------RAVTCLVF-SEDG---SFLISGSEDGCVRIWSLLTVFEECESQRA-------  163 (451)
Q Consensus       104 i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~-~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------  163 (451)
                      |.-.|+.+|+.+..++.  |.       .....+.. ..++   +.++.+..+|.+.++|..++.........       
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~  359 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccc
Confidence            77889999998876643  21       11112221 2233   35778888999999998775432110000       


Q ss_pred             -----cccce------------------ecccCCcCceeEEEEeecCCeeEEEEe-------------------------
Q 012996          164 -----SHLYL------------------HSFTGHTLRITDIVIGYGGVSATIVSA-------------------------  195 (451)
Q Consensus       164 -----~~~~~------------------~~~~~~~~~i~~i~~~~~~~~~~l~s~-------------------------  195 (451)
                           ...++                  ....+|.-  ...+++|..  .+++..                         
T Consensus       360 ~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw--~~~a~dp~~--~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~  435 (596)
T d1w6sa_         360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQ--GHDSYDPKR--ELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (596)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCS--CBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccCccccccCCccceeEeccccccccc--CccccCCCC--ceEEecccccccccccccccccccccccccc
Confidence                 00000                  00000100  011222221  111111                         


Q ss_pred             -----e---------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          196 -----S---------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       196 -----~---------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                           +         .-|.|.-||+.+++.+.......+..+-.++..+.++++|+.||.++.+|..+++
T Consensus       436 ~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence                 0         1257889999999988777655444333333467788889999999999999985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.25  E-value=0.055  Score=47.53  Aligned_cols=242  Identities=8%  Similarity=0.033  Sum_probs=123.3

Q ss_pred             eEeeccCcccCC----CCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC----------------CCE
Q 012996           45 RFLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS----------------GDI  104 (451)
Q Consensus        45 ~~~~~~~~l~~~----~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i  104 (451)
                      .++|+++++|.+    |.+-..|++.|+.+++.............++|.+|+..|+....+                ..|
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v  210 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceE
Confidence            389999999854    444468999999999865444333334678999999988654322                247


Q ss_pred             EEEEcCCCcc--eeeecccc--CCeeEEEEccCCcEEEEeeC---CCcEEEe--eCcchhhhhhhhcccccceecccCCc
Q 012996          105 YMWEVASGRL--LKKWHAHY--RAVTCLVFSEDGSFLISGSE---DGCVRIW--SLLTVFEECESQRASHLYLHSFTGHT  175 (451)
Q Consensus       105 ~iwd~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~l~s~~~---dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~  175 (451)
                      ..+.+.+...  ...+....  ..+..+..++++++++....   ++...+|  ++........   .............
T Consensus       211 ~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~  287 (430)
T d1qfma1         211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT---GILKWVKLIDNFE  287 (430)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC---SSCCCEEEECSSS
T ss_pred             EEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccc---cccceeEeecccc
Confidence            7777766533  23333332  34667778899998764332   3344444  4422100000   0000111112222


Q ss_pred             CceeEEEEeecCCeeEEEEeeC---CCcEEEEEcCCCcee--ee-ee-cccceeEEEECCCCCEEEEEe-CCC--cEEEE
Q 012996          176 LRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLL--RN-IV-FPSVIDAIALDPAEHVFYAGS-RDG--SIYIA  245 (451)
Q Consensus       176 ~~i~~i~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~--~~-~~-~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~  245 (451)
                      .... ...+.++  .+++....   ++.|...++......  .. +. +...+..-.+...+.+|+... .++  .|+++
T Consensus       288 ~~~~-~~~~~~~--~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         288 GEYD-YVTNEGT--VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             SCEE-EEEEETT--EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             cceE-EEecCCc--eeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence            2222 2222222  34443332   356666676654321  22 22 233344334444455565554 444  58888


Q ss_pred             EccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEc---CCCcEEEEeCCCCc
Q 012996          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGS---EDGMVRVWDPITHN  301 (451)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~---~dg~i~iwd~~~~~  301 (451)
                      ++.++..         ........+.|..+...+ .. +.++-+   .=.++.-+|+.+++
T Consensus       365 ~~~~~~~---------~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         365 DLATGAL---------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             ETTTCCE---------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCCCcE---------EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            8876531         112222234454444444 33 333222   12568888888775

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.99  E-value=0.098  Score=45.81  Aligned_cols=223  Identities=15%  Similarity=0.166  Sum_probs=111.3

Q ss_pred             eeEEEECCCCcEEEEec-cC----CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC--------------
Q 012996           83 IKPIAANSHGTYIAGGG-QS----GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED--------------  143 (451)
Q Consensus        83 v~~~~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------------  143 (451)
                      +..+++||+++++|.+- .+    -.|+++|+.+++.+...- .......+.|.+|++.|+-...+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            44567899999988542 22    349999999998764221 11223568999999887754332              


Q ss_pred             --CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCcEEE--EEcCCCce-----
Q 012996          144 --GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKV--WSLLKGRL-----  211 (451)
Q Consensus       144 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~i--wd~~~~~~-----  211 (451)
                        ..|..|.+.+...       ....+.........+..+..+.++  .+++...   .+....+  .|+.....     
T Consensus       206 ~~~~v~~h~lgt~~~-------~d~~v~~e~d~~~~~~~~~~s~d~--~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~  276 (430)
T d1qfma1         206 LHQKLYYHVLGTDQS-------EDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (430)
T ss_dssp             CCCEEEEEETTSCGG-------GCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             CcceEEEEECCCCcc-------ccccccccccCCceEEeeeccCCc--ceeeEEeeccCCccEEEEEeeCCCcccccccc
Confidence              2477777754211       111222222233345556666666  5554322   2333344  45432211     


Q ss_pred             ---eeeee-cccceeEEEECCCCCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE
Q 012996          212 ---LRNIV-FPSVIDAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL  283 (451)
Q Consensus       212 ---~~~~~-~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l  283 (451)
                         ...+. ......-+. +.++.+++...   .++.|...++......    .+.  ..+..+...+..-.+.. +++|
T Consensus       277 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~----~w~--~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         277 LKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEES----KWK--VLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             CCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGG----GCE--EEECCCSSCEEEEEEEETTTEE
T ss_pred             cceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccc----cce--EEecccCcceeeeEEEEECCEE
Confidence               11111 111222222 22223333332   2356666666654211    111  12233444454434444 5666


Q ss_pred             EEEc-CCC--cEEEEeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996          284 ISGS-EDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRP  322 (451)
Q Consensus       284 ~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  322 (451)
                      +... .++  .|++++..++.....+....+.|..+...++.
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~  391 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             EEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCC
Confidence            6554 554  48899998887665555445555555444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.37  Score=40.80  Aligned_cols=140  Identities=11%  Similarity=0.062  Sum_probs=85.0

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC---------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  150 (451)
                      .....-++.++...++++|+.++ +.|..+.+-         .........-..|..++|+.+  .|+.. .++.+..++
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            45678899998888888888775 667664211         001111112235888999754  45544 445788888


Q ss_pred             CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee------eecccceeEE
Q 012996          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN------IVFPSVIDAI  224 (451)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~~~~~i~~~  224 (451)
                      .....           .......-..++..+.+.+    ..++....++.+.++++..+.....      +.....+.++
T Consensus       112 ~~~l~-----------~~~~~~~~~~~~~~~~~~p----~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v  176 (381)
T d1xipa_         112 LEELS-----------EFRTVTSFEKPVFQLKNVN----NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAV  176 (381)
T ss_dssp             SSSTT-----------CEEEEEECSSCEEEEEECS----SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEE
T ss_pred             eeccc-----------cccccccccccccceecCC----ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEE
Confidence            75421           1111112234566666555    3566777789999999988754322      2234667888


Q ss_pred             EECCCCCEEEEEeC
Q 012996          225 ALDPAEHVFYAGSR  238 (451)
Q Consensus       225 ~~~~~~~~l~~~~~  238 (451)
                      +|++.+..++++..
T Consensus       177 ~ws~kgkq~v~~~g  190 (381)
T d1xipa_         177 LLKDRSFQSFAWRN  190 (381)
T ss_dssp             EETTSCEEEEEEET
T ss_pred             EEeCCcEEEEEeCC
Confidence            88888888877743

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.21  Score=42.37  Aligned_cols=187  Identities=7%  Similarity=0.014  Sum_probs=100.0

Q ss_pred             CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (451)
Q Consensus       123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~  202 (451)
                      ....-++.++...+++.|+.++ +.|..+....................  .-..|..++|+.+    .++.. .++.+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d----~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD----QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT----EEEEE-ESSEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC----EEEEE-eCCCEE
Confidence            3456788888777888888774 67777654332221111111111111  1125777888643    34443 445678


Q ss_pred             EEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee----eeccCCcceeEEEE
Q 012996          203 VWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG----SLSDHSKAVTCLAY  277 (451)
Q Consensus       203 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~  277 (451)
                      .++...-....... ...++..+.+.|.  .++....+|.+.++++.....       ..+.    .+. -.+.+.+++|
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~-------~~~~~~v~~~~-~~~~~~~v~w  178 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-------KQLAQNVTSFD-VTNSQLAVLL  178 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-------EEEEESEEEEE-ECSSEEEEEE
T ss_pred             EEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcc-------ccccCCcceEE-ecCCceEEEE
Confidence            88876654443333 4566778887764  566777889999999887641       1111    111 1255777777


Q ss_pred             ec-CCEEEEEcCCCcEEEE-eCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996          278 ST-GDLLISGSEDGMVRVW-DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (451)
Q Consensus       278 ~~-~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (451)
                      ++ +..++++..++ ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus       179 s~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         179 KDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            77 66666653221 1111 111111000001123457788888776666543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.91  E-value=0.38  Score=40.22  Aligned_cols=197  Identities=14%  Similarity=0.228  Sum_probs=110.6

Q ss_pred             EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceE--ee--ccCcccCCC-CCC--ccEEEEECCCCceeeee
Q 012996            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF--LA--SSQLREQPS-ASS--GSILYWSWSKPQVEVKS   77 (451)
Q Consensus         5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~--~~~~l~~~~-~d~--g~i~vw~~~~~~~~~~~   77 (451)
                      ++... .++-|.+||+. |+.+..+..     ..+.-+..+.  ..  ....+++++ .++  ..|.+|.+.........
T Consensus        43 I~gTd-K~~Gl~vYdL~-G~~l~~~~~-----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          43 LITTN-KKSGLAVYSLE-GKMLHSYHT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             EEEEE-TTSCCEEEETT-CCEEEECCS-----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             EEEEc-CcCCEEEEcCC-CcEEEeccc-----CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            33445 56679999985 888877642     2333333211  11  222344444 221  36778877533221111


Q ss_pred             c---------CCCCeeEEEE--CCC-Cc-EEEEeccCCCEEEEEcCC---C----cceeeeccccCCeeEEEEccCCcEE
Q 012996           78 L---------PAEPIKPIAA--NSH-GT-YIAGGGQSGDIYMWEVAS---G----RLLKKWHAHYRAVTCLVFSEDGSFL  137 (451)
Q Consensus        78 ~---------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~---~----~~~~~~~~~~~~v~~~~~~~~~~~l  137 (451)
                      .         ....+..+++  ++. |. ++++...+|.+..|.+..   +    +.++.+. -...+..+.+.+....|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence            1         1234677777  664 44 566777889998887732   2    2344443 34568889999988889


Q ss_pred             EEeeCCCcEEEeeCcchhhhhhhhcccccceeccc--CCcCceeEEEEeec--CCeeEEEEeeCCCcEEEEEcCCC-cee
Q 012996          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIGYG--GVSATIVSASEDRTCKVWSLLKG-RLL  212 (451)
Q Consensus       138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~--~~~~~l~s~~~d~~i~iwd~~~~-~~~  212 (451)
                      +.+-.+..|..++......      .....+....  .....+..+++-..  +.+-+|+|.-.+++..+||.... +.+
T Consensus       195 yisEE~~Giw~~~a~~~~~------~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~  268 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGG------SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYV  268 (353)
T ss_dssp             EEEETTTEEEEEESSTTSC------SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             EEecCccceEEEEeccCCC------ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcccc
Confidence            9888876665555432100      1111221221  24567888886543  34456666667889999998763 444


Q ss_pred             eee
Q 012996          213 RNI  215 (451)
Q Consensus       213 ~~~  215 (451)
                      ..|
T Consensus       269 g~F  271 (353)
T d1h6la_         269 ADF  271 (353)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.98  E-value=0.81  Score=38.14  Aligned_cols=190  Identities=13%  Similarity=0.059  Sum_probs=101.8

Q ss_pred             CeeEEEECCCCcEEEEecc------------CCCEEEEEcCCCccee-eeccc-------cCCeeEEEE--ccCCc-EEE
Q 012996           82 PIKPIAANSHGTYIAGGGQ------------SGDIYMWEVASGRLLK-KWHAH-------YRAVTCLVF--SEDGS-FLI  138 (451)
Q Consensus        82 ~v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~-~~~~~-------~~~v~~~~~--~~~~~-~l~  138 (451)
                      ....|...|+|..+++++.            .|.|.++|+.+..... .+...       .-....+..  .+++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456777888877766532            4889999987654322 11111       112244444  33554 344


Q ss_pred             Eee---CCCcEEEeeCcchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEeeC---------------CC
Q 012996          139 SGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASE---------------DR  199 (451)
Q Consensus       139 s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~---------------d~  199 (451)
                      +..   ...+|.+|++....       .....+.++. ......+++++..++  .+++|-..               -+
T Consensus       116 vvnH~~~~~~ieif~~~~~~-------~~l~~~~~v~~~~~~~pNDv~~~~~g--~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEE-------KSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTT-------TEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             EEeccCCCceeEEEEEeCCC-------CeEEEEeecCCccccCccceEEecCC--CEEEecCccCcChhhhhhhHhhcCC
Confidence            432   34578888874311       1111222222 123456788888877  77777321               12


Q ss_pred             cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996          200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (451)
Q Consensus       200 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (451)
                      ...+|....+........-...+.++++|++++|+++ +..+.|+.|++......      ...... .-...+-.+.+.
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l------~~~~~~-~l~~~pDNi~~d  259 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL------TPLRVL-SFDTLVDNISVD  259 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE------EEEEEE-ECSSEEEEEEEC
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc------ceEEEe-cCCCCCCccEEe
Confidence            3344444444433333344568899999999888776 45678999998754311      111111 123455667776


Q ss_pred             c-CCEEEEEc
Q 012996          279 T-GDLLISGS  287 (451)
Q Consensus       279 ~-~~~l~s~~  287 (451)
                      + +..+.+++
T Consensus       260 ~~~g~lwva~  269 (340)
T d1v04a_         260 PVTGDLWVGC  269 (340)
T ss_dssp             TTTCCEEEEE
T ss_pred             cCCCEEEEEE
Confidence            5 44444443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.76  E-value=1.4  Score=39.82  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=42.7

Q ss_pred             CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996          198 DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (451)
Q Consensus       198 d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (451)
                      .|.+.-+|+.+++.......+.++..-.++..+.++++|+.||.++.+|..+++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            367888999999998888765555433334467788899999999999999986

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=2.3  Score=33.92  Aligned_cols=85  Identities=14%  Similarity=0.118  Sum_probs=40.4

Q ss_pred             ccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEecc---------CCCEEEEEcCCCccee--eeccccCCeeEE
Q 012996           61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQ---------SGDIYMWEVASGRLLK--KWHAHYRAVTCL  128 (451)
Q Consensus        61 g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~--~~~~~~~~v~~~  128 (451)
                      ..+.+||..+.+...... +...-..-...-++.+++.|+.         -..+.+||..+.....  .+......-.+.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~   98 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG   98 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc
Confidence            568899998876543321 1111111111224666666653         1357788876654322  111111111222


Q ss_pred             EEccCCcEEEEeeCCCcEE
Q 012996          129 VFSEDGSFLISGSEDGCVR  147 (451)
Q Consensus       129 ~~~~~~~~l~s~~~dg~i~  147 (451)
                      .  .+++.++.++.++...
T Consensus        99 ~--~~~~i~~~gg~~~~~~  115 (288)
T d1zgka1          99 V--IDGHIYAVGGSHGCIH  115 (288)
T ss_dssp             E--ETTEEEEECCEETTEE
T ss_pred             c--cceeeEEecceecccc
Confidence            2  2566666666554433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.77  E-value=3  Score=34.53  Aligned_cols=177  Identities=17%  Similarity=0.181  Sum_probs=98.1

Q ss_pred             EeeccCcccCCCC-----------CCccEEEEECCCCceeeeec--CC-------CCeeEEEE--CCCCc-EEEEe---c
Q 012996           46 FLASSQLREQPSA-----------SSGSILYWSWSKPQVEVKSL--PA-------EPIKPIAA--NSHGT-YIAGG---G   99 (451)
Q Consensus        46 ~~~~~~~l~~~~~-----------d~g~i~vw~~~~~~~~~~~~--~~-------~~v~~~~~--~~~~~-~l~~~---~   99 (451)
                      ..|+|..+++++.           ..|.|.++|+++........  ..       -....+.+  .++|. +|++.   .
T Consensus        42 ~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~  121 (340)
T d1v04a_          42 ILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG  121 (340)
T ss_dssp             ECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECST
T ss_pred             ECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccC
Confidence            5566666655432           12899999987654332211  11       12344443  44555 34443   2


Q ss_pred             cCCCEEEEEcCCCcce----eeec-cccCCeeEEEEccCCcEEEEeeC-----------------CCcEEEeeCcchhhh
Q 012996          100 QSGDIYMWEVASGRLL----KKWH-AHYRAVTCLVFSEDGSFLISGSE-----------------DGCVRIWSLLTVFEE  157 (451)
Q Consensus       100 ~dg~i~iwd~~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~  157 (451)
                      ...+|.+|++......    .++. ......+++.+..++.+++|-..                 -|.+.-||...    
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~----  197 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND----  197 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC----
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc----
Confidence            3456888887544321    2222 12345788998888888887311                 12233333311    


Q ss_pred             hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee---eeeecccceeEEEECCCCCEEE
Q 012996          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~  234 (451)
                                .......-...++|++++++. .++++-+..+.|+.|++.....+   ..+..+..+-.+.+.+.+..++
T Consensus       198 ----------~~~~~~~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         198 ----------VRVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             ----------EEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             ----------eEEEcCCCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence                      111122234568899998874 45566667889999998754322   2334677788899987554444


Q ss_pred             EEe
Q 012996          235 AGS  237 (451)
Q Consensus       235 ~~~  237 (451)
                      +++
T Consensus       267 va~  269 (340)
T d1v04a_         267 VGC  269 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.66  E-value=3.7  Score=35.47  Aligned_cols=60  Identities=8%  Similarity=0.028  Sum_probs=40.7

Q ss_pred             cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---------cccceeEEEECCC---CCEEEEE
Q 012996          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA---EHVFYAG  236 (451)
Q Consensus       175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~l~~~  236 (451)
                      -...++|+|.+++  +++++--..|.|++++..++.......         .......++++|+   ..+++..
T Consensus        26 L~~P~~la~~pdg--~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          26 LNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCceEEEEeCCC--eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            3466799999998  676665557999999987765433222         1345678999984   4555553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=3.2  Score=32.96  Aligned_cols=58  Identities=16%  Similarity=0.141  Sum_probs=30.5

Q ss_pred             EEecCCEEEEEcCCC-----cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996          276 AYSTGDLLISGSEDG-----MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (451)
Q Consensus       276 ~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~  333 (451)
                      ....+.+++.|+.++     ....+|..+.+....-.........-+...+++.++.|+.++.
T Consensus       192 ~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~  254 (288)
T d1zgka1         192 CVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH  254 (288)
T ss_dssp             EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             cceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCC
Confidence            333356666665543     4677777665443322222222322333457788888876554

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.36  E-value=3.4  Score=32.76  Aligned_cols=241  Identities=15%  Similarity=0.052  Sum_probs=115.0

Q ss_pred             ccEEEEECCC--CceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996           61 GSILYWSWSK--PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI  138 (451)
Q Consensus        61 g~i~vw~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (451)
                      -+|+.|-...  ............|..|+...  .+.++-. ||.|+.|-....-.+..-......|..+..-  ..+.+
T Consensus         4 ~sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~   78 (273)
T d1jtdb_           4 TSVVAWGGNNDWGEATVPAEAQSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSL   78 (273)
T ss_dssp             SEEEEESSCCSSSTTCCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEE
T ss_pred             CEEEEECCCCCCCceeccccCCCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCcee
Confidence            4677886432  22222222345688887742  2333334 8999999876554443333344556666543  22222


Q ss_pred             EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee-eeec
Q 012996          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-NIVF  217 (451)
Q Consensus       139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~  217 (451)
                      . -.||.+..|.......          . .........+..+.....   .. +. -.|+.+..|.-....... ....
T Consensus        79 a-l~dg~v~~wG~~~~gq----------~-~~~~~~~~~~~~i~~~~~---~~-~~-~~dg~v~~~g~~~~~~~~~~~~~  141 (273)
T d1jtdb_          79 A-LKDGEVIAWGGNEDGQ----------T-TVPAEARSGVDAIAAGAW---AS-YA-LKDGKVIAWGDDSDGQTTVPAEA  141 (273)
T ss_dssp             E-EETTEEEEEECCTTST----------T-CCCGGGGSSCCEEEEETT---EE-EE-EETTEEEEEECCTTSTTSCCGGG
T ss_pred             e-eeeeeeeccCCCccee----------e-ccccccccceeEEeeecc---cc-cc-cccccceecccCCCCceeeeccC
Confidence            2 2489999997633110          0 000011122333433222   22 22 247889998744322211 1112


Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996          218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (451)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~  297 (451)
                      ...+..++-.  . +......++.++.|-.....+..         ........|..|+... .+.+.- .||.|+-|=.
T Consensus       142 ~~~v~~~~~~--~-~~~~~~~~g~~~~~G~~~~g~~~---------~~~~~~~~v~~Is~G~-~h~~~l-~dG~v~~WG~  207 (273)
T d1jtdb_         142 QSGVTALDGG--V-YTALAVKNGGVIAWGDNYFGQTT---------VPAEAQSGVDDVAGGI-FHSLAL-KDGKVIAWGD  207 (273)
T ss_dssp             GSSEEEEEEC--S-SEEEEEETTEEEEEECCTTSTTS---------CCGGGSSSEEEEEECS-SEEEEE-ETTEEEEEEC
T ss_pred             CceEEEEecc--c-eeeeeecccceeEeecccCCccc---------ccccccCCccceeccc-eeeEEE-ecCcEEEcCC
Confidence            3344444432  2 22333457888888765432211         1112345677765543 222222 3899999965


Q ss_pred             CCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996          298 ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (451)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~  340 (451)
                      ...-.+..-......|..|+-.... .++.  .||.|..|-..
T Consensus       208 n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         208 NRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             CTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETTEEEEESTT
T ss_pred             CCCCccCCCccCCCCcEEEEeCcce-EEEE--ECCEEEEECCC
Confidence            4322111111123456666644322 2333  47899999643

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.12  E-value=4.1  Score=33.31  Aligned_cols=242  Identities=9%  Similarity=-0.008  Sum_probs=127.1

Q ss_pred             CCCcEEEEeccCCCEEEEEcCCCcc----eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996           90 SHGTYIAGGGQSGDIYMWEVASGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (451)
Q Consensus        90 ~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  165 (451)
                      |+...+++-+.+|.|+--.+.+.+.    -..++. .+.+..+........|+.-+..|.+..-.+........  ....
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~--~s~G   79 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW--KDLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT--TSCC
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccc--cccc
Confidence            5667778888999988665532110    011222 23454444444444555556777765544433211100  0112


Q ss_pred             cceeccc--CCcCceeEE-EEeecCCeeEEEEeeCCCcEEEEEcCCCc------ee--eeeecccceeEEEECCCCCEEE
Q 012996          166 LYLHSFT--GHTLRITDI-VIGYGGVSATIVSASEDRTCKVWSLLKGR------LL--RNIVFPSVIDAIALDPAEHVFY  234 (451)
Q Consensus       166 ~~~~~~~--~~~~~i~~i-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~--~~~~~~~~i~~~~~~~~~~~l~  234 (451)
                      .++..+-  .....+..+ .........+++..+..|.++...+....      -.  ..+.....+..+........++
T Consensus        80 ~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~  159 (323)
T d1wp5a_          80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF  159 (323)
T ss_dssp             EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred             ccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEE
Confidence            2222221  123334333 33332223688999999999998864321      11  2233455666777777777889


Q ss_pred             EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CCEEEEEcCCCcEEEEeCCC-------CceEEE
Q 012996          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLISGSEDGMVRVWDPIT-------HNIVRM  305 (451)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~l~s~~~dg~i~iwd~~~-------~~~~~~  305 (451)
                      .++..|.+..++...-..............+.. ...|.+ ....+ +..|+..+..|..+.-.+..       ++-+..
T Consensus       160 l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~-~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~  238 (323)
T d1wp5a_         160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI  238 (323)
T ss_dssp             EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred             EEEecceeeEeecccccccCccccccccccccc-ccccchhhhccccccceeeeeeeheeecccchhhcccccccccccc
Confidence            999999999998876443222111111222332 234444 34444 77888889999877754432       121222


Q ss_pred             ee---cCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996          306 FR---LAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (451)
Q Consensus       306 ~~---~~~~~v~~l~~s~~~~~l~~~s~d~~i~  335 (451)
                      ++   .....|..+....+...|+..+..|.+.
T Consensus       239 ~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~  271 (323)
T d1wp5a_         239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIE  271 (323)
T ss_dssp             SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred             ccccccccceeeeeEecCCCCEEEEEeCCCEEE
Confidence            22   1123455555555555565555666543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.95  E-value=6.4  Score=33.90  Aligned_cols=54  Identities=11%  Similarity=0.083  Sum_probs=38.9

Q ss_pred             CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee--ee------ccccCCeeEEEEccC
Q 012996           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KW------HAHYRAVTCLVFSED  133 (451)
Q Consensus        80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~------~~~~~~v~~~~~~~~  133 (451)
                      -...++|+|.|+|++|++--..|.|++++..++....  .+      ..-.+....|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3577899999999988886557999999877765322  11      112356789999984

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.87  E-value=5  Score=30.25  Aligned_cols=210  Identities=11%  Similarity=0.108  Sum_probs=111.3

Q ss_pred             CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCC--cEEEE------eeCCCcEEEeeCcchhhhhhhhc
Q 012996           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG--SFLIS------GSEDGCVRIWSLLTVFEECESQR  162 (451)
Q Consensus        91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s------~~~dg~i~vwd~~~~~~~~~~~~  162 (451)
                      +.++++++...|.+.++-+..++.+..-+   .+|....- |..  .++.-      |-.-..|.+-++...        
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~--------   92 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRP--------   92 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTST--------
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCC--------
Confidence            45578888889999999887776554322   33322211 111  11111      111223444444210        


Q ss_pred             ccccceeccc-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--c--------ceeEEEE-CCCC
Q 012996          163 ASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--S--------VIDAIAL-DPAE  230 (451)
Q Consensus       163 ~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~--------~i~~~~~-~~~~  230 (451)
                        . ....+. ...-.|.+++....   +..++|+......+|-+..|+...-...+  +        .|..+.+ .+..
T Consensus        93 --G-EE~~i~spk~vRI~S~~yddk---~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~  166 (313)
T d2hu7a1          93 --G-EEQRLEAVKPMRILSGVDTGE---AVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGR  166 (313)
T ss_dssp             --T-CEEECTTSCSBEEEEEEECSS---CEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTE
T ss_pred             --C-eeeEecCCceEEEEEeeecCc---eEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCc
Confidence              1 111112 12245666655332   78889999888999998887654332211  2        2222222 2333


Q ss_pred             CEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcC---CCcEEEEeCCCCceEEE-
Q 012996          231 HVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE---DGMVRVWDPITHNIVRM-  305 (451)
Q Consensus       231 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~-  305 (451)
                      .-|+++.- .|.+++++.                    ..+.++.....+++.++++-.   .....-+|+++++.-+. 
T Consensus       167 ~sfF~adl~SG~lri~tp--------------------keGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve  226 (313)
T d2hu7a1         167 VSLFTSNLSSGGLRVFDS--------------------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLE  226 (313)
T ss_dssp             EEEEEEETTTEEEEEECC--------------------SSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECC
T ss_pred             ceEEEEecccCCEEEecC--------------------CCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeee
Confidence            33444443 555555544                    344556656666555544422   12222457776654332 


Q ss_pred             ee------cCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996          306 FR------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (451)
Q Consensus       306 ~~------~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~  338 (451)
                      +.      ...-.|+-+-+.|++++++.+-.||.-+++.
T Consensus       227 ~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         227 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            11      1123567777999999999999999888775

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=83.99  E-value=8.3  Score=30.31  Aligned_cols=204  Identities=16%  Similarity=0.108  Sum_probs=98.9

Q ss_pred             CCCccEEEEECCCC-ceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE
Q 012996           58 ASSGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF  136 (451)
Q Consensus        58 ~d~g~i~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  136 (451)
                      .| |.|..|-.+.. ++-........|..++.-.. ..++.  .||.++.|.....-...........+..+.....  .
T Consensus        42 ~d-G~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~-~~~al--~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~  115 (273)
T d1jtdb_          42 KG-GKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--A  115 (273)
T ss_dssp             ET-TEEEEEECCTTSTTSCCGGGGSCCCEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--E
T ss_pred             EC-CEEEEEeCCCCCceeeeecccccceEEecCCC-ceeee--eeeeeeccCCCcceeeccccccccceeEEeeecc--c
Confidence            34 99999986643 22222223456666665322 22333  4899999986443222222222334555554432  2


Q ss_pred             EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeee
Q 012996          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNI  215 (451)
Q Consensus       137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~  215 (451)
                      .+. -.|+.+..|.-....         ...  ........|..++-  ..  ..++ ...++.++.|-.... +.....
T Consensus       116 ~~~-~~dg~v~~~g~~~~~---------~~~--~~~~~~~~v~~~~~--~~--~~~~-~~~~g~~~~~G~~~~g~~~~~~  178 (273)
T d1jtdb_         116 SYA-LKDGKVIAWGDDSDG---------QTT--VPAEAQSGVTALDG--GV--YTAL-AVKNGGVIAWGDNYFGQTTVPA  178 (273)
T ss_dssp             EEE-EETTEEEEEECCTTS---------TTS--CCGGGGSSEEEEEE--CS--SEEE-EEETTEEEEEECCTTSTTSCCG
T ss_pred             ccc-cccccceecccCCCC---------cee--eeccCCceEEEEec--cc--eeee-eecccceeEeecccCCcccccc
Confidence            222 248889998753211         000  00111123333322  11  2222 334778888865432 222222


Q ss_pred             ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEE
Q 012996          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW  295 (451)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iw  295 (451)
                      .....|..++..... .++ - .||.|+.|=.........         .......|..|+-.....++.  .||.|..|
T Consensus       179 ~~~~~v~~Is~G~~h-~~~-l-~dG~v~~WG~n~~Gql~~---------~~~~~~~v~~I~~G~~~~~~l--~~g~v~~W  244 (273)
T d1jtdb_         179 EAQSGVDDVAGGIFH-SLA-L-KDGKVIAWGDNRYKQTTV---------PTEALSGVSAIASGEWYSLAL--KNGKVIAW  244 (273)
T ss_dssp             GGSSSEEEEEECSSE-EEE-E-ETTEEEEEECCTTSTTCC---------CGGGGSSCCEEEECSSCEEEE--ETTEEEEE
T ss_pred             cccCCccceecccee-eEE-E-ecCcEEEcCCCCCCccCC---------CccCCCCcEEEEeCcceEEEE--ECCEEEEE
Confidence            345567777654332 222 2 379999997654322111         111223466666544333443  48999999


Q ss_pred             eCC
Q 012996          296 DPI  298 (451)
Q Consensus       296 d~~  298 (451)
                      -..
T Consensus       245 G~~  247 (273)
T d1jtdb_         245 GSS  247 (273)
T ss_dssp             STT
T ss_pred             CCC
Confidence            643