Citrus Sinensis ID: 013026

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MGASDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEHHHccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHccHHEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHcccccccccccHHHHccccEEEEcccccccccccccccccccccccccHHHHcccccccEEEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHcccEEEEcc
Coil and Loop (DISEMBL)
mgasdpvveretqnkeeeegggegggeeevkdveKGEVVVEEKVVdsnsnvninningeqrgfnasmmqtlnptnplrivinggrrvtapriatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtalnskkytnKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICfqkpatdgvgVCFIAFAIGNGLYACWVSQRIGFCCKVLIISlqpvskfsdlnqptywmlGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQnlgsaclgslfvpTIEALRIVARGLnllegedeFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA
Flexible Loop (DISEMBL)
mgasdpvveretqnkeeeegggegggeeevkdvekGEVVVeekvvdsnsnvninninGEQRGFNASMMQTLNPTNPLRIVINGGRRVTApriatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtalnSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA
Low Complexity Region (SEG)
MGASDPVVERETQNkeeeegggegggeeevkdvekgevvveekvvdsnsnvninninGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAAsllsislsfsWQKAVRVWPKFMVHFILWssfflslsAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA
Disordered region (IsUnstruct)
***************************************************************************PLRIVING*************************************************************YTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRI***
Disordered Region (DISOPRED)
*********************************************************************************************************************************************SKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILA*ESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRIST*
Disordered Region (DISEMBL)
**********************************KGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIA**********************************************LNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA
Disordered Region (DISPRO)
***********************************GEVVVEEKVV**NSNVNI********GFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPS****************************************ALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGL**********EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRIST*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGASDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
Q869R1	555	CTL-like protein DDB_G027	yes	no	0.414	0.336	0.25	3e-06
Q4PIP8	602	Protein PNS1 OS=Ustilago	N/A	no	0.250	0.187	0.258	5e-05
Q4I8E9	538	Protein PNS1 OS=Gibberell	yes	no	0.252	0.211	0.262	0.0002
Q6CY85	553	Protein PNS1 OS=Kluyverom	yes	no	0.230	0.188	0.313	0.0003

>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 25/212 (11%)

Query: 253 VGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSF 312
           +G+ F   A    L+      RI F   +L  ++  + ++  + +  Y  +   F+W   
Sbjct: 239 LGIIFAIMAFFIILFYISCRSRIPFTATLLSNAVAIIKEYPSVIRAGYVSIFINFVWFIV 298

Query: 313 W-------ILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYI---- 361
           W        +   GA+       I I LV +L W   V++N ++ TV  +++ +Y     
Sbjct: 299 WGSAFARVNMVYTGAIQ----TCINIYLVFTLYWVFHVIKNTLHTTVSGLLATWYFCSGP 354

Query: 362 --LGM-QSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGL----NLLEGEDEFMF 414
             +GM  + T    +RALT + GS C GSL +  IE LR +++ +    N++     ++F
Sbjct: 355 NGVGMPHNPTLGSARRALTTSFGSICFGSLIISLIETLRYLSQMMINNRNVVVKIIGYIF 414

Query: 415 SCAHCCLRIMESIFRCGNGWAYVQVTHFSFSF 446
              +C L ++ SI +  N +A+  V  +  SF
Sbjct: 415 ---NCILSMLSSIVQFFNTYAFTHVAIYGKSF 443

Dictyostelium discoideum (taxid: 44689)

>sp|Q4PIP8|PNS1_USTMA Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 330 IIALVLSLAWTTEVMRNVVNLTVCRV--ISLYYILGMQSSTQFCFQRALTQNLGSACLGS 387
           ++ +V +  W +EV++N+   TV  +  ++ Y    + ++    F+R++T +LGS C GS
Sbjct: 351 MVFIVFAYYWISEVIKNIAFTTVAGIFGVAYYNANKVANAAWGAFRRSMTYSLGSICFGS 410

Query: 388 LFVPTIEALRIVARGLNLLEGEDEFM----FSC-AHCCLRIMESIFRCGNGWAYVQVTHF 442
           L V  ++ LR +   L      D  M     +C A CC+  ++ +    N +AY+ +  +
Sbjct: 411 LIVAILDLLRALFNILQSQAASDGDMTGQILACVAGCCVSCIQGLVDYFNRYAYINIALY 470

Probably involved in transport through the plasma membrane.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 329 IIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGM---QSSTQFCFQRALTQNLGSACL 385
           +I  +  ++ W +E ++N ++ T+  V   +Y       + +T+   +RALT + GS  L
Sbjct: 286 LIAFITFAMYWFSEWLKNTIHTTIAGVYGSWYFNPHNFPKDATRASAKRALTYSFGSIAL 345

Query: 386 GSLFVPTIEALRIVARGLNLLEGED-----EFMFSCAHCCLRIMESIFRCGNGWAYVQVT 440
           GSL V  I+ LR +       EG D       +F C  C L ++E      N +A+  + 
Sbjct: 346 GSLLVAIIQFLRQICNAARNQEGADGSFVGYAIFCCISCLLGLLEWAVEFINRYAFCHIA 405

Query: 441 HF 442
            +
Sbjct: 406 LY 407

Probably involved in transport through the plasma membrane.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 339 WTTEVMRNVVNLTVCRVISLYYIL-----GMQSSTQF-CFQRALTQNLGSACLGSLFVPT 392
           +  EV+RNV++ TV  +   +Y       GM     F   +R+LT + GS C GSL V  
Sbjct: 303 YIAEVIRNVIHCTVSGIFGAWYYFSKSDQGMPKWPGFGALKRSLTYSFGSICFGSLIVTI 362

Query: 393 IEALRIVAR----GLNLLEGEDEFMFSC----AHCCLRIMESIFRCGNGWAYVQVTHF 442
           IE L+ V R    G+    G D     C    A+     +E + R  N +AYV +  +
Sbjct: 363 IETLKAVLRLAVDGVMGGGGADNGWMQCLALIANWIFSFLEWLARYFNHYAYVFIALY 420

Probably involved in transport through the plasma membrane.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
255553428	568	gd2b, putative [Ricinus communis] gi|223	0.869	0.690	0.671	1e-160
356539148	550	PREDICTED: protein PNS1-like [Glycine ma	0.931	0.763	0.671	1e-159
224104107	540	predicted protein [Populus trichocarpa]	0.886	0.740	0.653	1e-153
449464020	560	PREDICTED: CTL-like protein DDB_G0274487	0.889	0.716	0.673	1e-152
449531655	549	PREDICTED: CTL-like protein DDB_G0274487	0.889	0.730	0.673	1e-152
225449991	540	PREDICTED: protein PNS1 [Vitis vinifera]	0.902	0.753	0.632	1e-151
357458339	593	Protein PNS1 [Medicago truncatula] gi|35	0.933	0.709	0.640	1e-149
17064962	569	Unknown protein [Arabidopsis thaliana] g	0.922	0.731	0.602	1e-146
22326789	569	Plasma-membrane choline transporter fami	0.922	0.731	0.602	1e-146
297807401	564	hypothetical protein ARALYDRAFT_488199 [	0.926	0.741	0.591	1e-144

>gi|255553428|ref|XP_002517755.1| gd2b, putative [Ricinus communis] gi|223543027|gb|EEF44562.1| gd2b, putative [Ricinus communis]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/432 (67%), Positives = 340/432 (78%), Gaps = 40/432 (9%)

Query: 26  GEEEVKDVEKGEVV-VEEKVVDSNSNVNI----------NNINGEQRGFNASMMQTLNPT 74
            E + +D+EKGE + ++EKV++  +NVN           ++ N ++   + SM+Q LNP+
Sbjct: 38  NERKERDLEKGEELGIKEKVIEDKNNVNNNNNSNNNNNGDHENDQRNNLHVSMLQRLNPS 97

Query: 75  NPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQ 134
           NPLRIVIN                     + R+A+P PSQ S PRS        TP PQ 
Sbjct: 98  NPLRIVIN--------------------NSTRVASPSPSQTSLPRS--------TPNPQ- 128

Query: 135 ASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYL 194
            S T LNS++YTNKISLFLFVLHMILAIGLVGFL+FKGIQGL+ AS+S+KRKEKR+LKY 
Sbjct: 129 PSITTLNSRRYTNKISLFLFVLHMILAIGLVGFLIFKGIQGLLEASDSVKRKEKRILKYF 188

Query: 195 LPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVG 254
           LPQVEAA+LLSI+L+  WQKAVRVWP+ MVHFILW SFF+SLSAGILLICFQK +TDGVG
Sbjct: 189 LPQVEAAALLSITLACVWQKAVRVWPRIMVHFILWCSFFMSLSAGILLICFQKASTDGVG 248

Query: 255 VCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWI 314
           VC IAFAIGNGLYACWV+QRI F  K+LI SL+PV KF DLN+PTYWMLG GF+WMS WI
Sbjct: 249 VCLIAFAIGNGLYACWVNQRIKFSTKILIKSLEPVPKFGDLNEPTYWMLGLGFVWMSLWI 308

Query: 315 LAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQR 374
           LAV+GA NF++PPLIIIALVLSLAW TEVMRNVVNLTV RVISLYY+ GMQ+STQFCFQR
Sbjct: 309 LAVVGASNFHYPPLIIIALVLSLAWVTEVMRNVVNLTVSRVISLYYLRGMQASTQFCFQR 368

Query: 375 ALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGW 434
           A+T+NLGSACLGS+FVP+IEALRIVARGLNLLEGEDEFMFSCAHCCL +M SIF+ GN W
Sbjct: 369 AVTRNLGSACLGSVFVPSIEALRIVARGLNLLEGEDEFMFSCAHCCLGVMNSIFKNGNSW 428

Query: 435 AYVQVTHFSFSF 446
           AYVQ+  +   F
Sbjct: 429 AYVQIAAYGKGF 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539148|ref|XP_003538062.1| PREDICTED: protein PNS1-like [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 301/448 (67%), Positives = 341/448 (76%), Gaps = 28/448 (6%)

Query: 1   MGASDPVV-ERETQNKEEEEGGGEGGGEEEVKDVEKGEVV-VEEKVVDSNSNVNINNING 58
           MGAS+ VV E+E +N+   E       ++E KD+EKG  V VEE+   SN+N N  N + 
Sbjct: 1   MGASEHVVVEKEKENETVAEA------KKEEKDLEKGGGVGVEERKFHSNNNNNDVNDHE 54

Query: 59  EQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRP 118
           E    + S    LNPTNPLRIVIN     ++ R+ATPPP            P  SQ S  
Sbjct: 55  ES---HISSFHRLNPTNPLRIVIN-----SSTRVATPPP------------PAQSQRSHT 94

Query: 119 RSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLIL 178
            + S   P       Q     LNS+KYTN+ISLFLFVLHM LA+ LV FLVFKG+QGLI 
Sbjct: 95  HTRSIPTPQQQQPEPQPQPVTLNSRKYTNRISLFLFVLHMFLAVTLVFFLVFKGVQGLIQ 154

Query: 179 ASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSA 238
            SES KRKEK VLKY LPQVEAAS +SI L+F WQ A+R WP FM+HFILW +F +SL+A
Sbjct: 155 ESESNKRKEKNVLKYFLPQVEAASFMSIILAFIWQGAIRKWPTFMLHFILWFTFVVSLAA 214

Query: 239 GILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQP 298
           GILLICFQKPATDGVGVCFIAFAIGNGLYACWVS RI FCCKVL +SLQPVSKF DL++P
Sbjct: 215 GILLICFQKPATDGVGVCFIAFAIGNGLYACWVSHRIKFCCKVLSLSLQPVSKFPDLSKP 274

Query: 299 TYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISL 358
           TY++LG GFLW+S WILAVIGALNFYFPPL+IIALVLSLAWTTEVMRNVVN+TV RVI+L
Sbjct: 275 TYYVLGAGFLWISLWILAVIGALNFYFPPLVIIALVLSLAWTTEVMRNVVNITVSRVIAL 334

Query: 359 YYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAH 418
           YY+ GMQSSTQFCF RALT+NLGSACLGSLFVP IEALRIVARGLNLLEGEDEFMF CAH
Sbjct: 335 YYLRGMQSSTQFCFLRALTRNLGSACLGSLFVPAIEALRIVARGLNLLEGEDEFMFCCAH 394

Query: 419 CCLRIMESIFRCGNGWAYVQVTHFSFSF 446
           CCLR+MESIFR GNGWAYVQ+  +   F
Sbjct: 395 CCLRVMESIFRNGNGWAYVQIAAYGKGF 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104107|ref|XP_002313322.1| predicted protein [Populus trichocarpa] gi|222849730|gb|EEE87277.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 298/456 (65%), Positives = 339/456 (74%), Gaps = 56/456 (12%)

Query: 1   MGASDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVV-VEEKVVDSNSNVNINNINGE 59
           MGA++PVVERE++ +EEEE G E   +EE  DV+KGEV+ V+EK                
Sbjct: 1   MGAAEPVVERESERREEEEEGNER--KEEGGDVDKGEVLGVQEKF--------------- 43

Query: 60  QRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPR 119
             G + +MMQ LNPTNPLRIVI G                    + R+ TP PSQ S PR
Sbjct: 44  -GGSHVAMMQRLNPTNPLRIVIGG--------------------SSRMPTPSPSQTSLPR 82

Query: 120 SISTSPPAPTPTPQQA---------SRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVF 170
           S         P  QQ          S+T LNS++YTNKISLFLFV HM+ A+GLV FL+F
Sbjct: 83  S--------APIRQQKIELLLIFEPSQTTLNSRRYTNKISLFLFVFHMVAAVGLVSFLIF 134

Query: 171 KGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWS 230
           KGIQGLI ASES KRKE+R+LK+ LPQVE ASLLSI+L+F WQKAVR WP+ MV FILWS
Sbjct: 135 KGIQGLIEASESFKRKERRILKFYLPQVETASLLSITLAFVWQKAVRQWPRIMVPFILWS 194

Query: 231 SFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVS 290
           SF LSLSAGILLICFQ+ +TDGVGVC IAFAIGNGLYACWV+QRIGFC ++LI SL+PV 
Sbjct: 195 SFILSLSAGILLICFQRASTDGVGVCLIAFAIGNGLYACWVTQRIGFCTEILIKSLEPVP 254

Query: 291 KFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNL 350
           KF DLNQPTYWMLG GFLWMS WILAVIGA+NFYF PL+I  LVLSLAWT EVMRN+VNL
Sbjct: 255 KFGDLNQPTYWMLGVGFLWMSLWILAVIGAMNFYFTPLVITVLVLSLAWTAEVMRNIVNL 314

Query: 351 TVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGED 410
           TV RVI+LYY+ GMQS  Q CFQRA TQNLGSACLGSLFVPTIEALR+V RGLNLLEGED
Sbjct: 315 TVSRVIALYYLRGMQSIPQNCFQRAFTQNLGSACLGSLFVPTIEALRVVVRGLNLLEGED 374

Query: 411 EFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSF 446
           EFMFSCAHCCL +M+SIFR GN WA+VQV  +   F
Sbjct: 375 EFMFSCAHCCLNVMQSIFRYGNSWAFVQVATYGKGF 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464020|ref|XP_004149727.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/423 (67%), Positives = 333/423 (78%), Gaps = 22/423 (5%)

Query: 27  EEEVKDVEKGEVV--VEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGG 84
           E+ ++D+EKGE V  + E+V++ +  +   N  G+    + SM+  LNPTNPLRI++NGG
Sbjct: 30  EKRMEDLEKGEKVGVLPEQVMERD--IKTTNNEGD---LHVSMLHRLNPTNPLRIILNGG 84

Query: 85  RRVTAPRIATPPPSQPSRQAPR-IATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSK 143
            RV     ATP P QPS   P         QP  P S+ST        PQQ +   LNSK
Sbjct: 85  ARV-----ATPSP-QPSSGGPSGHHHHQHRQPPAPLSVST--------PQQPAVINLNSK 130

Query: 144 KYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASL 203
            YT+K+SLFLFVLH++LA+GLV FLVFKGIQGL+ AS+SIKRKEKR+L+Y LPQVE ASL
Sbjct: 131 AYTDKVSLFLFVLHLVLAVGLVCFLVFKGIQGLLYASDSIKRKEKRLLQYFLPQVEVASL 190

Query: 204 LSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIG 263
           LSISL+F+WQKAVR+WPKFMVHFILW SF +SLSAGILL+CFQ PAT+GVGVCF+ FAIG
Sbjct: 191 LSISLAFAWQKAVRLWPKFMVHFILWCSFAMSLSAGILLVCFQMPATEGVGVCFLVFAIG 250

Query: 264 NGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNF 323
           NGLYACWVSQRIGFC KV I SL+PV K  DLNQPTYWMLG GFLWMSFWIL+VIGALNF
Sbjct: 251 NGLYACWVSQRIGFCSKVFIKSLEPVCKIRDLNQPTYWMLGAGFLWMSFWILSVIGALNF 310

Query: 324 YFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSA 383
           YFPPL II LVLSL WT EVMRNV N+TV R I+LYY+ GM+S+T++C QRALT+NLGSA
Sbjct: 311 YFPPLTIIVLVLSLLWTAEVMRNVANITVSRAITLYYLRGMESNTRYCLQRALTRNLGSA 370

Query: 384 CLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFS 443
            LGSLFVPTIEALRI+ARGLNLLEGEDEFMFSCAHCCL +M SIFR GN WA+VQ+  + 
Sbjct: 371 SLGSLFVPTIEALRILARGLNLLEGEDEFMFSCAHCCLHVMNSIFRRGNSWAFVQIGSYG 430

Query: 444 FSF 446
             F
Sbjct: 431 KDF 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531655|ref|XP_004172801.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/423 (67%), Positives = 333/423 (78%), Gaps = 22/423 (5%)

Query: 27  EEEVKDVEKGEVV--VEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGG 84
           E+ ++D+EKGE V  + E+V++ +  +   N  G+    + SM+  LNPTNPLRI++NGG
Sbjct: 19  EKRMEDLEKGEKVGVLPEQVMERD--IKTTNNEGD---LHVSMLHRLNPTNPLRIILNGG 73

Query: 85  RRVTAPRIATPPPSQPSRQAPR-IATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSK 143
            RV     ATP P QPS   P         QP  P S+ST        PQQ +   LNSK
Sbjct: 74  ARV-----ATPSP-QPSSGGPSGHHHHQHRQPPAPLSVST--------PQQPAVINLNSK 119

Query: 144 KYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASL 203
            YT+K+SLFLFVLH++LA+GLV FLVFKGIQGL+ AS+SIKRKEKR+L+Y LPQVE ASL
Sbjct: 120 AYTDKVSLFLFVLHLVLAVGLVCFLVFKGIQGLLYASDSIKRKEKRLLQYFLPQVEVASL 179

Query: 204 LSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIG 263
           LSISL+F+WQKAVR+WPKFMVHFILW SF +SLSAGILL+CFQ PAT+GVGVCF+ FAIG
Sbjct: 180 LSISLAFAWQKAVRLWPKFMVHFILWCSFAMSLSAGILLVCFQMPATEGVGVCFLVFAIG 239

Query: 264 NGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNF 323
           NGLYACWVSQRIGFC KV I SL+PV K  DLNQPTYWMLG GFLWMSFWIL+VIGALNF
Sbjct: 240 NGLYACWVSQRIGFCSKVFIKSLEPVCKIRDLNQPTYWMLGAGFLWMSFWILSVIGALNF 299

Query: 324 YFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSA 383
           YFPPL II LVLSL WT EVMRNV N+TV R I+LYY+ GM+S+T++C QRALT+NLGSA
Sbjct: 300 YFPPLTIIVLVLSLLWTAEVMRNVANITVSRAITLYYLRGMESNTRYCLQRALTRNLGSA 359

Query: 384 CLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFS 443
            LGSLFVPTIEALRI+ARGLNLLEGEDEFMFSCAHCCL +M SIFR GN WA+VQ+  + 
Sbjct: 360 SLGSLFVPTIEALRILARGLNLLEGEDEFMFSCAHCCLHVMNSIFRRGNSWAFVQIGSYG 419

Query: 444 FSF 446
             F
Sbjct: 420 KDF 422

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449991|ref|XP_002273748.1| PREDICTED: protein PNS1 [Vitis vinifera] gi|297736338|emb|CBI24976.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/449 (63%), Positives = 327/449 (72%), Gaps = 42/449 (9%)

Query: 1   MGASDPVVERETQNKEEEEGGGEGGGEEEV---KDVEKGEVVVEEKVVDSNSNVNINNIN 57
           MGA +PV ERE   K+ EE   E   + E    KD+EKGE   EE+V             
Sbjct: 1   MGALEPVEERENSEKDGEERAEEEKEKREDEEHKDLEKGEEGFEEQVGRGTPQ------- 53

Query: 58  GEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSR 117
             Q  F+ SM+Q LNP+NPLR+ I G  R T P                        P++
Sbjct: 54  -PQGDFHVSMLQRLNPSNPLRVAIPGVTRATTP-----------------------SPAQ 89

Query: 118 PRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLI 177
           PRS ST          Q + T LNS  YTN+ISLFLF+LH +LA+GLV FL+FKGIQGL 
Sbjct: 90  PRSTST-------PTPQQTITTLNSTAYTNRISLFLFLLHAVLAVGLVCFLIFKGIQGL- 141

Query: 178 LASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLS 237
           L    ++RKE+++LKY LPQVEAASLLSI+L+F+WQKAVR WPKFM+HFILWS+F +SLS
Sbjct: 142 LEPGQVQRKERKLLKYFLPQVEAASLLSITLAFAWQKAVRTWPKFMIHFILWSTFLMSLS 201

Query: 238 AGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQ 297
           AGILLICFQ P+TDGVGVCFI FAIGNGLYACWV+ RI FC K+ I SL+P SKF DLNQ
Sbjct: 202 AGILLICFQMPSTDGVGVCFILFAIGNGLYACWVTHRIKFCSKIFIKSLEPASKFPDLNQ 261

Query: 298 PTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVIS 357
           PTYWMLG GF+WMS WILAV+GA NF+FPPLIII LVLSLAWT EVMRNV NLTV RVI+
Sbjct: 262 PTYWMLGVGFMWMSLWILAVMGASNFHFPPLIIIVLVLSLAWTAEVMRNVANLTVSRVIA 321

Query: 358 LYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCA 417
           LYY+ GMQ +T+FCFQRAL++NLGSACLGS FVP IEALRIVARGLNLLEGEDEFMFSCA
Sbjct: 322 LYYLRGMQCNTKFCFQRALSRNLGSACLGSTFVPAIEALRIVARGLNLLEGEDEFMFSCA 381

Query: 418 HCCLRIMESIFRCGNGWAYVQVTHFSFSF 446
           HCCL IMESIFR GNGWAYVQ+  +   F
Sbjct: 382 HCCLHIMESIFRYGNGWAYVQIAAYGKGF 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458339|ref|XP_003599450.1| Protein PNS1 [Medicago truncatula] gi|355488498|gb|AES69701.1| Protein PNS1 [Medicago truncatula]

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/439 (64%), Positives = 327/439 (74%), Gaps = 18/439 (4%)

Query: 23  EGGGEEEVKDVEKGEV----------VVEEKVVDSNSNVNINNINGEQRGFNASMMQTLN 72
           +G  EE ++D+EKGEV            +E V +       +  + E  GFN S    LN
Sbjct: 3   DGKKEEGLRDLEKGEVGKNDVEDDDDDDDEDVENVAHGHGGHGHHDEHEGFNVSRFHRLN 62

Query: 73  PTNPLRIVINGGRRVTAPRIATPPPSQPSR-QAPRIATPPPSQPSRPRSISTSPPAPTPT 131
           PTNPLRIV+N   RV  P    PPP +  R   P  + P P+        +  PP P P 
Sbjct: 63  PTNPLRIVMNSNTRVAKP----PPPKKSQRSHTPTRSIPIPTPAP---IQTPQPPPPPPP 115

Query: 132 PQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVL 191
            QQ     LNS++YTN+ISLF+F LH +LAI LV FLVFKGIQGL+  S S+KRKEKRVL
Sbjct: 116 QQQQQPVTLNSRRYTNRISLFIFALHQLLAIALVCFLVFKGIQGLVQESGSVKRKEKRVL 175

Query: 192 KYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATD 251
            Y LPQVEAA+ +SI L+F WQ A+R WP FMVHFILW +F +SL+AGILLICFQKP TD
Sbjct: 176 MYFLPQVEAATFMSIILAFIWQGAIRKWPTFMVHFILWFTFVMSLAAGILLICFQKPPTD 235

Query: 252 GVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMS 311
           GVGVCFIAFAIGNGLY CW+S RI FCCKVL +SLQP+SKFSDLN+PTY+ML  GFLW+S
Sbjct: 236 GVGVCFIAFAIGNGLYGCWISHRIKFCCKVLSLSLQPMSKFSDLNRPTYYMLAAGFLWIS 295

Query: 312 FWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFC 371
            W LAV+GALNFYFPPL+IIALVLSLAWTTEVMRNVVN+TV RVI+LYY+ GMQSSTQFC
Sbjct: 296 LWTLAVVGALNFYFPPLVIIALVLSLAWTTEVMRNVVNITVSRVIALYYLRGMQSSTQFC 355

Query: 372 FQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCG 431
           F RALT+NLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMF CA CCL +M+SIFR G
Sbjct: 356 FLRALTRNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFCCARCCLGVMQSIFRNG 415

Query: 432 NGWAYVQVTHFSFSFRIST 450
           N WAYVQ+  +   F +++
Sbjct: 416 NSWAYVQIAAYGRGFVMAS 434

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17064962|gb|AAL32635.1| Unknown protein [Arabidopsis thaliana] gi|21387171|gb|AAM47989.1| unknown protein [Arabidopsis thaliana]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/470 (60%), Positives = 340/470 (72%), Gaps = 54/470 (11%)

Query: 1   MGASDP-VVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGE 59
           MGA++P VVERE + K E++         EVK VE+G    E K  D  S+         
Sbjct: 1   MGATEPAVVERERKEKSEKQ--------REVKAVEEGGGEEESKDKDEISH--------- 43

Query: 60  QRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPP--SQP----------------- 100
              F AS+   LNPTNPLRI++NGG R T P    PPP  +QP                 
Sbjct: 44  -HRFLASL-NRLNPTNPLRIIVNGGSRFTTP----PPPNLAQPLRSSSRQPPPPPPRPQT 97

Query: 101 ----SRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVL 156
                 +  +  TPPP    + RSI T      PTPQQ +  +LNS KYTNK  L LF+ 
Sbjct: 98  PPTFVPEETQPQTPPPPNQHQTRSIFT------PTPQQ-TLASLNSTKYTNKFFLLLFIF 150

Query: 157 HMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAV 216
           H ++AIG VGFLVF+G+QGLI ++ S+KRKEK++L++LLPQVEAASLLSI L+F WQ A 
Sbjct: 151 HKVVAIGFVGFLVFRGVQGLIGSNGSVKRKEKKILRFLLPQVEAASLLSIILAFLWQMAF 210

Query: 217 RVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIG 276
           R+WP FM+HFILWS+F +SLS+GILL+CFQ PATD VGVC IAF+IGNGLYACWV++RI 
Sbjct: 211 RIWPDFMIHFILWSTFLMSLSSGILLLCFQMPATDAVGVCLIAFSIGNGLYACWVTRRIK 270

Query: 277 FCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLS 336
           FC K+L+ SL+PVSKFSDLN PTY+ML  GFLWMS WI  VIGALNFYFPPL+II LVLS
Sbjct: 271 FCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWIFGVIGALNFYFPPLVIIGLVLS 330

Query: 337 LAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEAL 396
           LAWTTEVMRN+VNLTV RVI+LYY+ GMQSST+F FQRAL++NLGSACLGSLFVPTIEAL
Sbjct: 331 LAWTTEVMRNIVNLTVSRVIALYYLRGMQSSTRFSFQRALSRNLGSACLGSLFVPTIEAL 390

Query: 397 RIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSF 446
           RI+ARGLNLL+GEDEFMF CA+CCLR+M+ IF  GNGWA+VQ+  +   F
Sbjct: 391 RILARGLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGWAFVQIAAYGKGF 440

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326789|ref|NP_196880.2| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] gi|332004555|gb|AED91938.1| Plasma-membrane choline transporter family protein [Arabidopsis thaliana]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/470 (60%), Positives = 340/470 (72%), Gaps = 54/470 (11%)

Query: 1   MGASDP-VVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGE 59
           MGA++P VVERE + K E++         EVK VE+G    E K  D  S+         
Sbjct: 1   MGATEPAVVERERKEKSEKQ--------REVKAVEEGGGEEESKDKDEISH--------- 43

Query: 60  QRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPP--SQP----------------- 100
              F AS+   LNPTNPLRI++NGG R T P    PPP  +QP                 
Sbjct: 44  -HRFLASL-NRLNPTNPLRIIVNGGSRFTTP----PPPNLAQPLRSSSRQPPPPPPRPQT 97

Query: 101 ----SRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVL 156
                 +  +  TPPP    + RSI T      PTPQQ +  +LNS KYTNK  L LF+ 
Sbjct: 98  PPTFVPEETQPQTPPPPNQHQTRSIFT------PTPQQ-TLASLNSTKYTNKFFLLLFIF 150

Query: 157 HMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAV 216
           H ++AIG VGFLVF+G+QGLI ++ S+KRKEK++L++LLPQVEAASLLSI L+F WQ A 
Sbjct: 151 HKVVAIGFVGFLVFRGVQGLIGSNGSVKRKEKKILRFLLPQVEAASLLSIILAFLWQMAF 210

Query: 217 RVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIG 276
           R+WP FM+HFILWS+F +SLS+GILL+CFQ PATD VGVC IAF+IGNGLYACWV++RI 
Sbjct: 211 RIWPDFMIHFILWSTFLMSLSSGILLLCFQMPATDAVGVCLIAFSIGNGLYACWVTRRIK 270

Query: 277 FCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLS 336
           FC K+L+ SL+PVSKFSDLN PTY+ML  GFLWMS WI  VIGALNFYFPPL+II LVLS
Sbjct: 271 FCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWIFGVIGALNFYFPPLVIIGLVLS 330

Query: 337 LAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEAL 396
           LAWTTEVMRN+VNLTV RVI+LYY+ GMQSST+F FQRAL++NLGSACLGSLFVPTIEAL
Sbjct: 331 LAWTTEVMRNIVNLTVSRVIALYYLRGMQSSTRFSFQRALSRNLGSACLGSLFVPTIEAL 390

Query: 397 RIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSF 446
           RI+ARGLNLL+GEDEFMF CA+CCLR+M+ IF  GNGWA+VQ+  +   F
Sbjct: 391 RILARGLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGWAFVQIAAYGKGF 440

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807401|ref|XP_002871584.1| hypothetical protein ARALYDRAFT_488199 [Arabidopsis lyrata subsp. lyrata] gi|297317421|gb|EFH47843.1| hypothetical protein ARALYDRAFT_488199 [Arabidopsis lyrata subsp. lyrata]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/465 (59%), Positives = 334/465 (71%), Gaps = 47/465 (10%)

Query: 1   MGASDP-VVERETQNKEEEEGGGEGGGEEEVKDVEK-GEVVVEEKVVDSNSNVNINNING 58
           MGA++P VVER+ +  E++          E K VE+ GE   E K  D  S+        
Sbjct: 1   MGATEPAVVERDRKETEKQR---------EAKAVEEEGE---ESKDKDEISH-------- 40

Query: 59  EQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPP--SQP---------------S 101
               F AS+   LNPTNPLRI++NGG R T P    PPP  +QP                
Sbjct: 41  --HRFLASL-NRLNPTNPLRIIVNGGSRFTTP----PPPNLAQPIRSSSRQPPPPPPRPQ 93

Query: 102 RQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILA 161
                +   P  Q   P +   +    TPTPQQ +  +LNS KYTNK  L LF+ H ++A
Sbjct: 94  TPPTFVQEEPQPQTPPPPNQHQTRSIFTPTPQQ-TLASLNSTKYTNKFFLLLFIFHKVVA 152

Query: 162 IGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPK 221
           IG VGFLVF+G+QGLI ++ S+KRKE+++L++LLPQVEAASLLSI L+F WQ A R+WP 
Sbjct: 153 IGFVGFLVFRGVQGLIGSNGSVKRKEQKILRFLLPQVEAASLLSIILAFLWQMAFRLWPD 212

Query: 222 FMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKV 281
           FM+HFILWS+F +SLS+GILL+CFQ P TD VGVC IAF+IGNGLYACWV++RI FC K+
Sbjct: 213 FMIHFILWSTFLMSLSSGILLLCFQMPTTDAVGVCLIAFSIGNGLYACWVTRRIKFCSKI 272

Query: 282 LIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTT 341
           L+ SL+PVSKFSDLN PTY+ML  GFLWMS WI  VIGALNFYFPPL+II LVLSLAWTT
Sbjct: 273 LVKSLEPVSKFSDLNLPTYYMLAAGFLWMSLWIFGVIGALNFYFPPLVIIGLVLSLAWTT 332

Query: 342 EVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVAR 401
           EVMRN+VNLTV RVI+LYY+ GMQSST+F FQRAL++NLGSACLGSLFVPTIEALRI+AR
Sbjct: 333 EVMRNIVNLTVSRVIALYYLRGMQSSTRFSFQRALSRNLGSACLGSLFVPTIEALRILAR 392

Query: 402 GLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSF 446
           GLNLL+GEDEFMF CA+CCLR+M+ IF  GNGWA+VQ+  +   F
Sbjct: 393 GLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGWAFVQIAAYGKGF 437

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2177110	569	AT5G13760 "AT5G13760" [Arabido	0.682	0.541	0.694	1.3e-126
TAIR|locus:2079444	482	AT3G03700 [Arabidopsis thalian	0.647	0.605	0.270	1e-22
TAIR|locus:2100865	482	AT3G04440 [Arabidopsis thalian	0.647	0.605	0.270	1e-22
TAIR|locus:2031235	488	AT1G25500 [Arabidopsis thalian	0.423	0.391	0.271	8.4e-09
DICTYBASE|DDB_G0274487	555	DDB_G0274487 "Protein PNS1" [D	0.430	0.349	0.253	1.4e-07

TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
 Identities = 214/308 (69%), Positives = 253/308 (82%)

Query:   139 ALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQV 198
             +LNS KYTNK  L LF+ H ++AIG VGFLVF+G+QGLI ++ S+KRKEK++L++LLPQV
Sbjct:   133 SLNSTKYTNKFFLLLFIFHKVVAIGFVGFLVFRGVQGLIGSNGSVKRKEKKILRFLLPQV 192

Query:   199 EAAXXXXXXXXXXWQKAVRVWPKFMVHFILWXXXXXXXXAGILLICFQKPATDGVGVCFI 258
             EAA          WQ A R+WP FM+HFILW        +GILL+CFQ PATD VGVC I
Sbjct:   193 EAASLLSIILAFLWQMAFRIWPDFMIHFILWSTFLMSLSSGILLLCFQMPATDAVGVCLI 252

Query:   259 AFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVI 318
             AF+IGNGLYACWV++RI FC K+L+ SL+PVSKFSDLN PTY+ML  GFLWMS WI  VI
Sbjct:   253 AFSIGNGLYACWVTRRIKFCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWIFGVI 312

Query:   319 GALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQ 378
             GALNFYFPPL+II LVLSLAWTTEVMRN+VNLTV RVI+LYY+ GMQSST+F FQRAL++
Sbjct:   313 GALNFYFPPLVIIGLVLSLAWTTEVMRNIVNLTVSRVIALYYLRGMQSSTRFSFQRALSR 372

Query:   379 NLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQ 438
             NLGSACLGSLFVPTIEALRI+ARGLNLL+GEDEFMF CA+CCLR+M+ IF  GNGWA+VQ
Sbjct:   373 NLGSACLGSLFVPTIEALRILARGLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGWAFVQ 432

Query:   439 VTHFSFSF 446
             +  +   F
Sbjct:   433 IAAYGKGF 440

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 82/303 (27%), Positives = 125/303 (41%)

Query:   148 KISLFLFVLHMILAIGLVGFLVFK-GIQGLILASESIKRKEKRVLKYLLPQVEAAXXXXX 206
             K+   LF   +   + L+  LV    I+GLI AS          LK   P + A+     
Sbjct:    51 KLFRTLFKGLLFSQLTLISLLVIVLTIRGLISASTHHFH-----LKKWYPPLLASVAVSG 105

Query:   207 XXXXXWQKAVRVWPKFMVHFILWXXXXXXXXAGILLICFQKPATDGVGVCFIAFAIGNGL 266
                  WQ      P   V    W         GILL+        G+G  F+ FAI   L
Sbjct:   106 IASLAWQCIFIYNPSRAVKATFWLSPILTCSVGILLVLIGSAVDAGIGAVFVLFAITQSL 165

Query:   267 YACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFY-- 324
             Y CW++ R+ +  K+L  SL      +   +     +    ++  F +  + GA +    
Sbjct:   166 YGCWITPRLEYTDKIL--SLATAFPPARTREVVCLSIIVSVVYSGFLVTGIGGATSTRTN 223

Query:   325 FPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSAC 384
                L I  +++SLAWT +V++NV  + + R   + +  G        F+  +    GS C
Sbjct:   224 LDILFISVIIISLAWTMQVIKNVQQVAISRARYVNFAHGEDMDAWNAFRITMKHLTGSIC 283

Query:   385 LGSLFVPTIEALRIVARGLNLLEGE-DEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFS 443
             +GS  VP I  +R   R +NL+ G  DE M+S A C   I   +   GN W +V V  + 
Sbjct:   284 VGSTLVPIIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYD 343

Query:   444 FSF 446
               F
Sbjct:   344 KGF 346

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 82/303 (27%), Positives = 125/303 (41%)

Query:   148 KISLFLFVLHMILAIGLVGFLVFK-GIQGLILASESIKRKEKRVLKYLLPQVEAAXXXXX 206
             K+   LF   +   + L+  LV    I+GLI AS          LK   P + A+     
Sbjct:    51 KLFRTLFKGLLFSQLTLISLLVIVLTIRGLISASTHHFH-----LKKWYPPLLASVAVSG 105

Query:   207 XXXXXWQKAVRVWPKFMVHFILWXXXXXXXXAGILLICFQKPATDGVGVCFIAFAIGNGL 266
                  WQ      P   V    W         GILL+        G+G  F+ FAI   L
Sbjct:   106 IASLAWQCIFIYNPSRAVKATFWLSPILTCSVGILLVLIGSAVDAGIGAVFVLFAITQSL 165

Query:   267 YACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFY-- 324
             Y CW++ R+ +  K+L  SL      +   +     +    ++  F +  + GA +    
Sbjct:   166 YGCWITPRLEYTDKIL--SLATAFPPARTREVVCLSIIVSVVYSGFLVTGIGGATSTRTN 223

Query:   325 FPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSAC 384
                L I  +++SLAWT +V++NV  + + R   + +  G        F+  +    GS C
Sbjct:   224 LDILFISVIIISLAWTMQVIKNVQQVAISRARYVNFAHGEDMDAWNAFRITMKHLTGSIC 283

Query:   385 LGSLFVPTIEALRIVARGLNLLEGE-DEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFS 443
             +GS  VP I  +R   R +NL+ G  DE M+S A C   I   +   GN W +V V  + 
Sbjct:   284 VGSTLVPIIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYD 343

Query:   444 FSF 446
               F
Sbjct:   344 KGF 346

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 56/206 (27%), Positives = 87/206 (42%)

Query:   259 AFAIGN---GLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWIL 315
             AFA+G+    LY   V  R+ F   VL  +L+ V     +    +       LWMS W  
Sbjct:   157 AFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLWSF 216

Query:   316 AVIGALNFYFPP----LIIIALVLSLAWTTEVMRNVVNLTVC-RVISLYYILGMQSSTQF 370
                G +           +++ L +SL WT  V+ N V++ V   V  + +  G + S+  
Sbjct:   217 GAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSL 276

Query:   371 -------CFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRI 423
                      + A+T + GS C GSLF   I  LR   RG       +E +  C      +
Sbjct:   277 PPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLFHL 336

Query:   424 MESIFRCGNGWAYVQVTHFSFSFRIS 449
             +E++ R  N +AYVQ+  +   F  S
Sbjct:   337 VETLVRFFNKYAYVQIAVYGKGFNKS 362

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)]

 Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 52/205 (25%), Positives = 93/205 (45%)

Query:   253 VGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSF 312
             +G+ F   A    L+      RI F   +L  ++  + ++  + +  Y  +   F+W   
Sbjct:   239 LGIIFAIMAFFIILFYISCRSRIPFTATLLSNAVAIIKEYPSVIRAGYVSIFINFVWFIV 298

Query:   313 WILAVIGALNFYFPPL---IIIALVLSLAWTTEVMRNVVNLTVCRVISLYYI------LG 363
             W  A       Y   +   I I LV +L W   V++N ++ TV  +++ +Y       +G
Sbjct:   299 WGSAFARVNMVYTGAIQTCINIYLVFTLYWVFHVIKNTLHTTVSGLLATWYFCSGPNGVG 358

Query:   364 M-QSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGL-NLLEGEDEFMFSCAHCCL 421
             M  + T    +RALT + GS C GSL +  IE LR +++ + N      + +    +C L
Sbjct:   359 MPHNPTLGSARRALTTSFGSICFGSLIISLIETLRYLSQMMINNRNVVVKIIGYIFNCIL 418

Query:   422 RIMESIFRCGNGWAYVQVTHFSFSF 446
              ++ SI +  N +A+  V  +  SF
Sbjct:   419 SMLSSIVQFFNTYAFTHVAIYGKSF 443


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.142   0.453    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      451       344   0.00097  116 3  11 21  0.40    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  232 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.46u 0.12s 23.58t   Elapsed:  00:00:01
  Total cpu time:  23.46u 0.12s 23.58t   Elapsed:  00:00:01
  Start:  Mon May 20 19:02:45 2013   End:  Mon May 20 19:02:46 2013

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	451
pfam04515	327	pfam04515, Choline_transpo, Plasma-membrane cholin	4e-35
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	8e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.002
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	0.004
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	0.004

>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter

 Score =  132 bits (335), Expect = 4e-35
 Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 32/217 (14%)

Query: 255 VCFIAFAIGNGLYACW---VSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMS 311
           +  I F +   +       + +RI     +L  +   VSK   L             +++
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 312 FWILAVIGALNFY-------------------FPPLIIIALVLSLAWTTEVMRNVVNLTV 352
            WI+  +                             +++ L+  L WT+EV+  V ++T+
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 353 CRVISLYYILGMQ-----SSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLE 407
             V++ +Y  G +       T   F+RALT + GS C GSL V  I+ +RI+   L    
Sbjct: 121 AGVVATWYFAGGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRRKL 180

Query: 408 GEDE-----FMFSCAHCCLRIMESIFRCGNGWAYVQV 439
             D+     F+  C  CCL  +E      N  AYV +
Sbjct: 181 KGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHI 217

This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 73   PTNPLRIVINGGRRVTAPRIATPPPS--QPSRQAPRIATPPPSQPSRPRSISTSPPAPTP 130
            P  P R  +   RR+  P ++    S   P  Q  R   P    P +P+     PP P P
Sbjct: 2875 PAAPARPPV---RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931

Query: 131  TPQQASR 137
             P    R
Sbjct: 2932 PPPPPPR 2938

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 73   PTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTP 132
             T    +  +   R   P+   PP  QP    P    PPP  P RP+     P APT  P
Sbjct: 2894 STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ----PPLAPTTDP 2949

Query: 133  QQAS 136
              A 
Sbjct: 2950 AGAG 2953

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 19/50 (38%), Positives = 23/50 (46%)

Query: 88  TAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASR 137
           TA   ++PP   P    P  A+P P + S P S S S PAP P    A  
Sbjct: 182 TARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADD 231

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 80   VINGG--RRVTAPRIATPPPSQPSR-QAPRIATPPPSQPSRPRSISTSPPAPTPTPQQAS 136
            V  GG  RR    R     P+ P+R    R+A P  S+ +   ++    P   P PQ   
Sbjct: 2856 VAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP 2915

Query: 137  R 137
             
Sbjct: 2916 P 2916

Length = 3151

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 9/145 (6%)

Query: 9   ERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMM 68
             E++ ++ EE GG     +++K ++  +  +++   DS  + + ++I+GE    +    
Sbjct: 320 SEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGED-SVSLVTA 378

Query: 69  QTLNPTNPLRIVINGGRRVTAPRIATPPPSQPS----RQAPRIATPPPSQPSRPRSISTS 124
           +          V +          A P P        + A  ++  P S P++      +
Sbjct: 379 KKQKEPKKEEPVDSNPSSPGNSGPARPSPESKDKGKRKAANEVSKSPASVPAKKLKTENA 438

Query: 125 PPAP----TPTPQQASRTALNSKKY 145
           P +     TP     S+++ N+   
Sbjct: 439 PKSSSGKSTPQTFSGSKSSSNAADG 463

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 73   PTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTP 132
            P+           R    R+A P  S+ +        PP      P+  +  PP P P P
Sbjct: 2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL---PPDQPERPPQPQAPPPPQPQPQP 2923

Query: 133  QQASRTA 139
                +  
Sbjct: 2924 PPPPQPQ 2930

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 15/55 (27%), Positives = 19/55 (34%)

Query: 85  RRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTA 139
               AP    PPP  P+   P  A P  +Q     +    PPA  P   +    A
Sbjct: 686 PIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAA 740

Length = 991

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 88  TAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPA-PTPTPQQASRTAL 140
            AP +   PP   +   P  A+PP +QP+     S+ PP   +P P +A +++ 
Sbjct: 147 PAPVVMMQPPPPHA-MPP--ASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSH 197

Length = 274

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 59  EQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRP 118
                  S   + +P  PL     G   V  P  ATP P+  +  +P   TP PS  + P
Sbjct: 174 APPLGEGSADGSCDPALPLSAPRLGPADVFVP--ATPRPTPRTTASPE-TTPTPSTTTSP 230

Query: 119 RSISTSPPAPTPTPQQASRT 138
            S +   P+ T    QA  T
Sbjct: 231 PSTTIPAPSTTIAAPQAGTT 250

Length = 401

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 85  RRVTAPRIAT--PPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQAS 136
           R   AP  A    P        P  A PP    + P   + + PAP P P  A+
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAA-PARPAAARPAPAPAPPAAA 431

Length = 576

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 84  GRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRS----ISTSPPAPTPTPQQASRTA 139
             R  A      P   PS   P     P S   RPR      S +  A  PT ++A    
Sbjct: 335 SSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAV 394

Query: 140 L 140
            
Sbjct: 395 A 395

Length = 1352

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 12/116 (10%)

Query: 29  EVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVT 88
           EV DVE  E   EE+ V   +  +    +G QR        T    +P     + G    
Sbjct: 513 EVIDVETTE---EEESVTQPAKPHRKVQDGFQRSGRRQKRATPPKVSP----SDRGPPKA 565

Query: 89  APRIATPPPSQPSRQA-----PRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTA 139
           +P +  PP + P   A     PR   PP + P +       PPA  P  +Q   +A
Sbjct: 566 SPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSA 621

Length = 1000

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 89  APRIATPPPSQPSRQAPRIATP-PPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTN 147
           A       P+     A       PP QP      +   P P P P      A   + +  
Sbjct: 95  AQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTGQAFVV 154

Query: 148 KISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRV----------LKYLLPQ 197
           ++       +   A  LV  L   G +  I  S  ++    RV           + LL +
Sbjct: 155 QLGAL---KNADRANELVAKLRGAGYRAYIEPSTPVQGDLTRVRVGPDASRAKAEGLLGE 211

Query: 198 VEAASLLS 205
           +E  S L+
Sbjct: 212 LEQLSGLN 219

Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
KOG1362	577	consensus Choline transporter-like protein [Lipid	100.0
PF04515	334	Choline_transpo: Plasma-membrane choline transport	100.0
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.4
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.36
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	96.55
KOG4672	487	consensus Uncharacterized conserved low complexity	96.48
PHA03247	3151	large tegument protein UL36; Provisional	95.93
KOG4672	487	consensus Uncharacterized conserved low complexity	95.4
PF11081	187	DUF2890: Protein of unknown function (DUF2890); In	95.31
PRK15313	955	autotransport protein MisL; Provisional	93.67
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	93.6
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	93.59
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	91.99
PRK09752	1250	adhesin; Provisional	91.45
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	90.43
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	90.35
KOG3895	488	consensus Synaptic vesicle protein Synapsin [Signa	89.73
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	88.61
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	87.63
TIGR00927	1096	2A1904 K+-dependent Na+/Ca+ exchanger.	87.49
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	87.15
KOG0391	1958	consensus SNF2 family DNA-dependent ATPase [Genera	86.79
KOG2236	483	consensus Uncharacterized conserved protein [Funct	86.7
KOG3397	225	consensus Acetyltransferases [General function pre	86.53
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	83.56
PHA03211	461	serine/threonine kinase US3; Provisional	83.35
PF12238	205	MSA-2c: Merozoite surface antigen 2c; InterPro: IP	82.28
KOG4590	409	consensus Signal transduction protein Enabled, con	82.25
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	81.01
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	80.92
PF12238	205	MSA-2c: Merozoite surface antigen 2c; InterPro: IP	80.91
PF05750	300	Rubella_Capsid: Rubella capsid protein; InterPro:	80.86
COG5373	931	Predicted membrane protein [Function unknown]	80.28
PRK13335	356	superantigen-like protein; Reviewed	80.02

>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.1e-47  Score=406.08  Aligned_cols=255  Identities=21%  Similarity=0.391  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhheee-ec-----CC------------------cc
Q 013026          196 PQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICF-QK-----PA------------------TD  251 (451)
Q Consensus       196 ~ll~~~~~vs~vlS~~wL~llr~~a~~lV~~~ii~~~il~l~~~i~~~~~-~~-----~~------------------~~  251 (451)
                      ..+...+.+++++|++|+.++|++++.++|+.+++.+++ ++.+++..++ +.     +.                  .+
T Consensus       150 ~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~-l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~  228 (577)
T KOG1362|consen  150 YTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVG-LLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLD  228 (577)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHH
Confidence            345678899999999999999999999998887774443 4444443221 10     00                  11


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhhcc--c-------
Q 013026          252 GVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGAL--N-------  322 (451)
Q Consensus       252 ~~gIv~lifaii~~ly~~~vr~RI~fA~aiLk~A~~~i~~~p~l~lv~~~~~iv~~~~~~~W~~~~iG~~--~-------  322 (451)
                      ..||+++++.++.++|.+++|+||++|++++|+|++++.+.|+++++|+.+.++.++|+++|+...++..  +       
T Consensus       229 ~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~gg~  308 (577)
T KOG1362|consen  229 AVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEGGC  308 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCc
Confidence            3689999999988889989999999999999999999999999999999999999999999998765432  1       


Q ss_pred             -cccCch----hHHHHHHH-HHHHHHHHhhccceeeeceeEEEEecCCC-----chHHHHHHHHHhhcchhhhhhhhHHH
Q 013026          323 -FYFPPL----IIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGSACLGSLFVP  391 (451)
Q Consensus       323 -~~~~~~----~i~~~lfs-l~Wt~~vi~nv~~vTIAGvva~WYF~~~~-----~pv~~Sf~rA~t~sfGSIcfGSLIVa  391 (451)
                       +.|.+.    ..+++++. ++|++||++|++|+++||++++|||++++     .|++.||+||++||+||||+|||+++
T Consensus       309 ~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yhlGSi~~GSliv~  388 (577)
T KOG1362|consen  309 ACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYHLGSICFGSLLVA  388 (577)
T ss_pred             eeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHhccchhhhhhHHH
Confidence             223321    23455555 99999999999999999999999998653     68999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc-cC-C---chhHHHhHHHHHHHHHHHHHHhhHHHHHHHHhcCCCccccCC
Q 013026          392 TIEALRIVARGLNLL-EG-E---DEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA  451 (451)
Q Consensus       392 iI~~lR~il~~l~~~-~~-~---~~~l~cc~~C~l~cle~~i~y~Nr~AyV~VAiyGk~Fc~SA~  451 (451)
                      +|+++|.++|+++++ ++ +   .++++||++||+||+|++++|+|||||+|+|+|||+||+|||
T Consensus       389 iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAk  453 (577)
T KOG1362|consen  389 LVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAK  453 (577)
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHH
Confidence            999999999999975 22 2   369999999999999999999999999999999999999986

>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane []

Probab=100.00  E-value=1.2e-43  Score=358.10  Aligned_cols=199  Identities=26%  Similarity=0.473  Sum_probs=175.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhhcccc---------
Q 013026          253 VGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNF---------  323 (451)
Q Consensus       253 ~gIv~lifaii~~ly~~~vr~RI~fA~aiLk~A~~~i~~~p~l~lv~~~~~iv~~~~~~~W~~~~iG~~~~---------  323 (451)
                      .++++++++++.+++.++.||||++|++++|+|+++++++|+++++|+++.++.++|+++|+.+.++....         
T Consensus         2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~   81 (334)
T PF04515_consen    2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN   81 (334)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence            56777788877777666679999999999999999999999999999999999999999999887543210         


Q ss_pred             -------------ccCc---hhHHHHHHHHHHHHHHHhhccceeeeceeEEEEecCCC-----chHHHHHHHHHhhcchh
Q 013026          324 -------------YFPP---LIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGS  382 (451)
Q Consensus       324 -------------~~~~---~~i~~~lfsl~Wt~~vi~nv~~vTIAGvva~WYF~~~~-----~pv~~Sf~rA~t~sfGS  382 (451)
                                   +++.   +..++++|+++|+++|++|+.|+|+||++++|||++++     +|+.+|++|+++|||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GS  161 (334)
T PF04515_consen   82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGS  161 (334)
T ss_pred             CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHH
Confidence                         1222   25578999999999999999999999999999998653     58999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhccCC-----chhHHHhHHHHHHHHHHHHHHhhHHHHHHHHhcCCCccccCC
Q 013026          383 ACLGSLFVPTIEALRIVARGLNLLEGE-----DEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA  451 (451)
Q Consensus       383 IcfGSLIVaiI~~lR~il~~l~~~~~~-----~~~l~cc~~C~l~cle~~i~y~Nr~AyV~VAiyGk~Fc~SA~  451 (451)
                      ||+|||++++++++|.++++++++.++     .+++.||++||++|+|+++||+|||||+|+|+||++||+|||
T Consensus       162 i~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak  235 (334)
T PF04515_consen  162 ICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAK  235 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            999999999999999999999886432     358899999999999999999999999999999999999985

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.40  E-value=2.2e-07  Score=101.48  Aligned_cols=22  Identities=9%  Similarity=-0.026  Sum_probs=14.0

Q ss_pred             hhHHHHHHHHHHhhhhhhhccc
Q 013026          273 QRIGFCCKVLIISLQPVSKFSD  294 (451)
Q Consensus       273 ~RI~fA~aiLk~A~~~i~~~p~  294 (451)
                      +-|+=++.-..+||+=+++.-+
T Consensus       795 nniKP~i~avt~ACEE~rkSes  816 (1102)
T KOG1924|consen  795 NNIKPDIVAVTAACEELRKSES  816 (1102)
T ss_pred             hhcChHHHHHHHHHHHHHhhhh
Confidence            5566666666677777776544

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.36  E-value=4.1e-07  Score=99.48  Aligned_cols=14  Identities=21%  Similarity=0.321  Sum_probs=8.1

Q ss_pred             CCCchhhhhhhcCc
Q 013026           24 GGGEEEVKDVEKGE   37 (451)
Q Consensus        24 ~~~~~~~~~~~~~~   37 (451)
                      -+.||++++..|-|
T Consensus       488 ta~qe~qael~k~e  501 (1102)
T KOG1924|consen  488 TARQEAQAELQKHE  501 (1102)
T ss_pred             hHHHHHHHHHHHhh
Confidence            34566666666654

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=96.55  E-value=0.0025  Score=76.34  Aligned_cols=7  Identities=14%  Similarity=0.510  Sum_probs=2.8

Q ss_pred             ceeEEEE
Q 013026          354 RVISLYY  360 (451)
Q Consensus       354 Gvva~WY  360 (451)
                      |++++||
T Consensus      1845 GaYaTWy 1851 (2039)
T PRK15319       1845 GVYATWF 1851 (2039)
T ss_pred             EEEEEee
Confidence            3344444

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]

Probab=96.48  E-value=0.011  Score=61.51  Aligned_cols=6  Identities=50%  Similarity=1.132  Sum_probs=2.2

Q ss_pred             CCCCce
Q 013026           73 PTNPLR   78 (451)
Q Consensus        73 ~~~~~~   78 (451)
                      |.+|++
T Consensus       308 ~~aP~~  313 (487)
T KOG4672|consen  308 PDAPLQ  313 (487)
T ss_pred             CCCCcc
Confidence            333333

>PHA03247 large tegument protein UL36; Provisional

Probab=95.93  E-value=0.012  Score=72.54  Aligned_cols=17  Identities=6%  Similarity=0.046  Sum_probs=11.0

Q ss_pred             hhhhHHHHHHHHHHhhh
Q 013026          271 VSQRIGFCCKVLIISLQ  287 (451)
Q Consensus       271 vr~RI~fA~aiLk~A~~  287 (451)
                      +++|++.+=..|.-.++
T Consensus      3121 i~r~lr~TR~~L~~~~~ 3137 (3151)
T PHA03247       3121 IRRQLRRTRHALLDRSG 3137 (3151)
T ss_pred             HHHHHHHHHHHHHhhHH
Confidence            35777777776665554

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]

Probab=95.40  E-value=0.048  Score=56.98  Aligned_cols=10  Identities=40%  Similarity=0.259  Sum_probs=4.2

Q ss_pred             cCCcccchhh
Q 013026           60 QRGFNASMMQ   69 (451)
Q Consensus        60 ~~~~~~~~~~   69 (451)
                      .+-.|++-+|
T Consensus       287 ~eden~~~~~  296 (487)
T KOG4672|consen  287 PEDENASSFQ  296 (487)
T ss_pred             hhhhcccccc
Confidence            3334444444

>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses

Probab=95.31  E-value=0.052  Score=51.51  Aligned_cols=13  Identities=23%  Similarity=0.327  Sum_probs=7.9

Q ss_pred             cCcchhHHHHHHH
Q 013026          142 SKKYTNKISLFLF  154 (451)
Q Consensus       142 ~~k~~D~~f~iLF  154 (451)
                      -+.+++.+|..|+
T Consensus       121 wr~lR~~I~~tLy  133 (187)
T PF11081_consen  121 WRELRNRIFPTLY  133 (187)
T ss_pred             HHHHHHHHHHHHH
Confidence            3446666776666

>PRK15313 autotransport protein MisL; Provisional

Probab=93.67  E-value=0.11  Score=59.58  Aligned_cols=7  Identities=0%  Similarity=0.135  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 013026          154 FVLHMIL  160 (451)
Q Consensus       154 Fll~l~~  160 (451)
                      |+.++.+
T Consensus       642 Y~ANl~A  648 (955)
T PRK15313        642 YLANNYA  648 (955)
T ss_pred             HHHHHHH
Confidence            3333333

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=93.60  E-value=0.098  Score=53.80  Aligned_cols=14  Identities=36%  Similarity=0.487  Sum_probs=9.3

Q ss_pred             ccchhhhcCCCCCc
Q 013026           64 NASMMQTLNPTNPL   77 (451)
Q Consensus        64 ~~~~~~~~~~~~~~   77 (451)
                      --=|||+-.|+-|+
T Consensus       217 PP~~~~Q~~P~P~m  230 (498)
T KOG4849|consen  217 PPLMMQQVRPTPLM  230 (498)
T ss_pred             CCcccccCCCCCCC
Confidence            44578888887554

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.59  E-value=0.047  Score=63.10  Aligned_cols=13  Identities=23%  Similarity=0.583  Sum_probs=5.8

Q ss_pred             CCCCCCCCccccc
Q 013026          126 PAPTPTPQQASRT  138 (451)
Q Consensus       126 ~~~~~~~~q~~l~  138 (451)
                      |.+||||++|++.
T Consensus        21 ps~pppPppPg~~   33 (2365)
T COG5178          21 PSQPPPPPPPGVN   33 (2365)
T ss_pred             CCCCCCccCCCcc
Confidence            3344444444553

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=91.99  E-value=0.52  Score=48.93  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=11.4

Q ss_pred             cceeeeeeecCCCcccc
Q 013026           37 EVVVEEKVVDSNSNVNI   53 (451)
Q Consensus        37 ~~~~~~~~~~~~~~~~~   53 (451)
                      .||++|-.|.....|..
T Consensus       123 sGvi~e~lvk~gdtV~~  139 (457)
T KOG0559|consen  123 SGVITELLVKDGDTVTP  139 (457)
T ss_pred             cceeeEEecCCCCcccC
Confidence            47777877776666654

>PRK09752 adhesin; Provisional

Probab=91.45  E-value=0.17  Score=59.25  Aligned_cols=7  Identities=43%  Similarity=0.643  Sum_probs=2.8

Q ss_pred             cccccCc
Q 013026           50 NVNINNI   56 (451)
Q Consensus        50 ~~~~~~~   56 (451)
                      .|.|+|.
T Consensus       852 ~V~V~N~  858 (1250)
T PRK09752        852 TVVVNSI  858 (1250)
T ss_pred             EEEEEcC
Confidence            3444443

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.43  E-value=0.22  Score=57.93  Aligned_cols=11  Identities=18%  Similarity=0.072  Sum_probs=4.9

Q ss_pred             HHHHHHhhhHH
Q 013026          213 QKAVRVWPKFM  223 (451)
Q Consensus       213 L~llr~~a~~l  223 (451)
                      +.|+-..|...
T Consensus       123 lkLLeNmP~pW  133 (2365)
T COG5178         123 LKLLENMPSPW  133 (2365)
T ss_pred             HHHHhcCCChH
Confidence            34444444443

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=90.35  E-value=0.75  Score=52.89  Aligned_cols=25  Identities=16%  Similarity=0.037  Sum_probs=12.9

Q ss_pred             cCCCCCceEEEeCcccccCCCCCCCC
Q 013026           71 LNPTNPLRIVINGGRRVTAPRIATPP   96 (451)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (451)
                      ++|.+. ..-.+.+.|...|+|+++.
T Consensus       299 ~~~~~~-~~~~~~~~~~~~~~p~~~~  323 (833)
T KOG1922|consen  299 LPSKVS-TFDFNFLQRESPPPPPILT  323 (833)
T ss_pred             CCCCcc-ccccccCccccCCCCCCCC
Confidence            444443 3344556666666655443

>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.73  E-value=0.67  Score=48.09  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=12.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q 013026           90 PRIATPPPSQPSRQAPRIATPPPS  113 (451)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~  113 (451)
                      |++.-|.+-+|+|.||+..|||+.
T Consensus       420 ~a~~~pt~~~PprPppqggppP~g  443 (488)
T KOG3895|consen  420 PAQASPTRRLPPRPPPQGGPPPRG  443 (488)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCcc
Confidence            444445555555566665555543

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=88.61  E-value=0.86  Score=49.17  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=18.8

Q ss_pred             CCcchhhhhhhhhhhcCCCCCCCchhhhhhhcCc
Q 013026            4 SDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGE   37 (451)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (451)
                      ++-.-|||.-|+.-+|++.|-| -|-+++.|.|+
T Consensus       148 ~~~s~~~~~~k~~F~~~~~~AE-~~~~~A~~~~~  180 (817)
T KOG1925|consen  148 ADTSSERSIYKARFLENVAAAE-TEKQVALAQGR  180 (817)
T ss_pred             cchhhhhhhHHhHHHhhhHHHH-HHHHHHHHhcc
Confidence            3444567776766666655543 33455666664

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=87.63  E-value=1  Score=47.52  Aligned_cols=16  Identities=31%  Similarity=0.447  Sum_probs=7.5

Q ss_pred             cCCCCCCCCCCCCCCC
Q 013026           88 TAPRIATPPPSQPSRQ  103 (451)
Q Consensus        88 ~~~~~~~~~~~~~~~~  103 (451)
                      |.|||+||..+.+..+
T Consensus       303 t~pPP~ppl~~~~g~~  318 (518)
T KOG1830|consen  303 TQPPPPPPLDSPPGPD  318 (518)
T ss_pred             CCCCCCCCCCCCCCCC
Confidence            4445444444444444

>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger

Probab=87.49  E-value=6  Score=46.18  Aligned_cols=17  Identities=12%  Similarity=0.131  Sum_probs=11.2

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 013026          147 NKISLFLFVLHMILAIG  163 (451)
Q Consensus       147 D~~f~iLFll~l~~~~~  163 (451)
                      +.||.+-|+..++-+.+
T Consensus       931 ~k~y~ltFi~SIiwIsi  947 (1096)
T TIGR00927       931 RKFFVITFLGSIMWIAM  947 (1096)
T ss_pred             cceeeehHHHHHHHHHH
Confidence            45777777777776433

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=87.15  E-value=0.18  Score=42.83  Aligned_cols=11  Identities=9%  Similarity=0.489  Sum_probs=0.0

Q ss_pred             hhhhhhhhhcC
Q 013026           10 RETQNKEEEEG   20 (451)
Q Consensus        10 ~~~~~~~~~~~   20 (451)
                      |++++.+++|+
T Consensus        10 ~dse~dsdEde   20 (101)
T PF09026_consen   10 EDSESDSDEDE   20 (101)
T ss_dssp             -----------
T ss_pred             cccccccccch
Confidence            44444433333

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]

Probab=86.79  E-value=1.1  Score=52.99  Aligned_cols=21  Identities=38%  Similarity=0.610  Sum_probs=8.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q 013026           98 SQPSRQAPRIATPPPSQPSRP  118 (451)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~  118 (451)
                      +|+-.+|-++-|+||.||.|+
T Consensus      1895 pq~~~~pqp~gpqPp~~p~p~ 1915 (1958)
T KOG0391|consen 1895 PQPAAQPQPQGPQPPQQPSPQ 1915 (1958)
T ss_pred             CccCCCCCCCCCCCCCCCCCC
Confidence            333334444444444444443

>KOG2236 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.70  E-value=2.1  Score=45.74  Aligned_cols=17  Identities=24%  Similarity=0.483  Sum_probs=6.9

Q ss_pred             cCCcccchh-hhcCCCCC
Q 013026           60 QRGFNASMM-QTLNPTNP   76 (451)
Q Consensus        60 ~~~~~~~~~-~~~~~~~~   76 (451)
                      .+||.-.+- +.|+|+.|
T Consensus       380 ~~gf~rp~s~~~q~pP~~  397 (483)
T KOG2236|consen  380 NRGFKRPRSNHGQKPPQS  397 (483)
T ss_pred             ccCCCCcccccCCCCCcc
Confidence            344543222 33444444

>KOG3397 consensus Acetyltransferases [General function prediction only]

Probab=86.53  E-value=0.6  Score=44.13  Aligned_cols=11  Identities=18%  Similarity=0.166  Sum_probs=6.9

Q ss_pred             chhhhcCCCCC
Q 013026           66 SMMQTLNPTNP   76 (451)
Q Consensus        66 ~~~~~~~~~~~   76 (451)
                      +|.+.+||+.|
T Consensus       154 a~~~~~~~~a~  164 (225)
T KOG3397|consen  154 AMNHFQNAAAS  164 (225)
T ss_pred             hhhhhhccccC
Confidence            45566677665

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=83.56  E-value=0.36  Score=48.33  Aligned_cols=10  Identities=40%  Similarity=0.916  Sum_probs=0.0

Q ss_pred             CCCCCCCCCC
Q 013026          124 SPPAPTPTPQ  133 (451)
Q Consensus       124 ~~~~~~~~~~  133 (451)
                      .|+++||||+
T Consensus       207 ~~~~~~~~~~  216 (264)
T PF06003_consen  207 GPPMIPPPPP  216 (264)
T ss_dssp             ----------
T ss_pred             cccCCCCccc
Confidence            3333333333

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=83.35  E-value=1.1  Score=48.21  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=11.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 013026           94 TPPPSQPSRQAPRIATPPPSQP  115 (451)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~  115 (451)
                      |+|++.|.+.+-+++||||++|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~   56 (461)
T PHA03211         35 PETFYNPPRGVCFPPPPEHDPP   56 (461)
T ss_pred             CCCCCCCccccccCCCCCCCCC
Confidence            4555555556666444443333

>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis

Probab=82.28  E-value=2.8  Score=40.54  Aligned_cols=29  Identities=28%  Similarity=0.318  Sum_probs=11.7

Q ss_pred             CCCchhhhhhhcCcceeeeeee-cCCCccc
Q 013026           24 GGGEEEVKDVEKGEVVVEEKVV-DSNSNVN   52 (451)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   52 (451)
                      +|+++|.++.=|-.+--+|-+| |-|.-|+
T Consensus        80 ~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~  109 (205)
T PF12238_consen   80 EEGREKMTKYYKKHIYKEDSEVKDYNGLVK  109 (205)
T ss_pred             hccHHHHHHHHHHhccCcccccccHHHHHH
Confidence            3444444444343333333333 4433333

Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].

>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]

Probab=82.25  E-value=2.1  Score=45.45  Aligned_cols=9  Identities=22%  Similarity=0.449  Sum_probs=3.5

Q ss_pred             HHHHhhhhH
Q 013026          267 YACWVSQRI  275 (451)
Q Consensus       267 y~~~vr~RI  275 (451)
                      .+|.++.|+
T Consensus       382 i~~~~~le~  390 (409)
T KOG4590|consen  382 ICCEVPLEM  390 (409)
T ss_pred             hhhhhhHHH
Confidence            344333333

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.01  E-value=2.5  Score=43.66  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=13.8

Q ss_pred             eeecCCCcccccCc-CCCcCCcccch
Q 013026           43 KVVDSNSNVNINNI-NGEQRGFNASM   67 (451)
Q Consensus        43 ~~~~~~~~~~~~~~-~~~~~~~~~~~   67 (451)
                      +-||+|..|-.--. |=.+.+.+..+
T Consensus       101 ~hVd~nG~V~LPYLh~W~~pssdLv~  126 (365)
T KOG2391|consen  101 EHVDPNGKVYLPYLHNWDPPSSDLVG  126 (365)
T ss_pred             hccCCCCeEechhhccCCCccchHHH
Confidence            45677777765433 33555555543

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=80.92  E-value=3.9  Score=45.84  Aligned_cols=9  Identities=0%  Similarity=0.357  Sum_probs=3.8

Q ss_pred             CceEEEeCc
Q 013026           76 PLRIVINGG   84 (451)
Q Consensus        76 ~~~~~~~~~   84 (451)
                      +.+|....+
T Consensus       505 ~~~~~~~~~  513 (620)
T PRK14948        505 SIKLNLESQ  513 (620)
T ss_pred             CeEEEEEec
Confidence            444444433

>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis

Probab=80.91  E-value=3.5  Score=39.89  Aligned_cols=13  Identities=31%  Similarity=0.197  Sum_probs=5.7

Q ss_pred             CCCCCchhhhhhh
Q 013026           22 GEGGGEEEVKDVE   34 (451)
Q Consensus        22 ~~~~~~~~~~~~~   34 (451)
                      |=-++|.|+||++
T Consensus        93 hIy~~d~~v~d~~  105 (205)
T PF12238_consen   93 HIYKEDSEVKDYN  105 (205)
T ss_pred             hccCcccccccHH
Confidence            3334444444444

Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].

>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae

Probab=80.86  E-value=1.3  Score=42.09  Aligned_cols=55  Identities=29%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCCCCCCCC---CCCCCCCCCC------CCCCCCCCCCCCC-cccccccccCcchhH
Q 013026           94 TPPPSQPSRQAPRIATP---PPSQPSRPRS------ISTSPPAPTPTPQ-QASRTALNSKKYTNK  148 (451)
Q Consensus        94 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~-q~~l~~~~~~k~~D~  148 (451)
                      ||---|-+++.++.+-|   ||+||+||+-      ..|.|---||+.+ |.-..|--++..||.
T Consensus        80 ppeerqesrsqtpapkpsrappqqpqpprmqtgrggsaprpelgpptnpfqaavarglrpplhdp  144 (300)
T PF05750_consen   80 PPEERQESRSQTPAPKPSRAPPQQPQPPRMQTGRGGSAPRPELGPPTNPFQAAVARGLRPPLHDP  144 (300)
T ss_pred             ChhhhhhhhccCCCCCCCCCCcCCCCCcccccCCCCCCCCcccCCCCChHHHHHHcccCCCCCCC
Confidence            44444444443333333   3444544432      3445544455544 444455555566663

Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid

>COG5373 Predicted membrane protein [Function unknown]

Probab=80.28  E-value=92  Score=36.18  Aligned_cols=13  Identities=15%  Similarity=0.189  Sum_probs=5.9

Q ss_pred             hHHHHHHHHHHHH
Q 013026          253 VGVCFIAFAIGNG  265 (451)
Q Consensus       253 ~gIv~lifaii~~  265 (451)
                      -|..|..+.++.+
T Consensus       226 pgaAf~LL~lIs~  238 (931)
T COG5373         226 PGAAFALLVLISL  238 (931)
T ss_pred             hhHHHHHHHHHHH
Confidence            3444444444443

>PRK13335 superantigen-like protein; Reviewed

Probab=80.02  E-value=2.6  Score=43.37  Aligned_cols=6  Identities=50%  Similarity=0.429  Sum_probs=2.3

Q ss_pred             eeeecC
Q 013026           42 EKVVDS   47 (451)
Q Consensus        42 ~~~~~~   47 (451)
                      ||+-.|
T Consensus        85 E~~s~S   90 (356)
T PRK13335         85 EKTSAS   90 (356)
T ss_pred             hccccC
Confidence            443333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00