Citrus Sinensis ID: 013082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKEGSSK
cEEEccccccEEEEEEEEccEEEcccccccccccHHHHHHHHHccccccccccccccEEEEEEccEEEcccccHHHHHccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHccHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEcccEEEEEEEEcccccccccEEEEEccccccEEEEEEccEEEcccHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccEEEEEccccccccccEEEEEEEccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
cEEEcccccccEEEEEEcccEEEEccccccccccHHHHHHHHHccccccEEEccccccccEcccccEEccccccHHHHcccccccHcHHHHHHcccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccEEEEHHHHHHHHHHHHHHHccccEcccEEEEEEEcccccEEEEcEEEEEccHHHHHHHHHHccccHHHHHHHHccccccEEEEEEEccHHHccccccccEEEEEcccccccEEEEEEEEEccccccccccccEEEEEEEcccccHHHHcccHHHHHHHHHHHHHHHHccccccEEEEEEEcHcccccccccHHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHccccc
mvfeaderaggklrsiskdgliwdegantmtESEMEVKGLLDdlgirekqqfpisqykryvvrngvpfliptnpiaLLTSNFLSAQSKFQIILEPflwkksdsakvsAEDAKEsvggffqrhfgrEVVDFLidpfvagtsagdpeslvmrhsFPELWNLEKRYGSVIAGAIKSKFSARKEKsaeakgssekkrrqrgsfsflggMQVLSLsyshdgrsalenwslcssnqekqslglsFDAVIMTaplcnvkemkitkggnlfpldflpeviyMPLSVIITTFkkenvrrplegfgvlvpskeqqngLKTLGTlfssmmfpdrvpkdlYLYTTfvggsrnkeLAKASTDELKQIVTSDLRQllgvegdpafvnhffwskafplygrdYDSVLEAIEKMETnlpgffyagnhrgglsvgKSIASGCKAAELVISYLEKssddkmlkegssk
mvfeaderaggklrsiskdgliwDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAgtsagdpeslVMRHSFPELWNLEKRYGSVIAGAIkskfsarkeksaeakgssekkrrqrgsfsFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFgvlvpskeqqnGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYlekssddkmlkegssk
MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIkskfsarkeksaeakgssekkRRQRGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKEGSSK
********************LIWD************VKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKK*************SVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAI*****************************FLGGMQVLSLSYSHDGRSALENWSLCS******SLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN********DELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYL***************
MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIK***********************RGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVIS*****************
**********GKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKK*************SVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSK*********************RGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKS************
MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKS**********KESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSAR***************RQRGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDD*********
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MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKEGSSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query450 2.2.26 [Sep-21-2011]
Q94IG7531 Protoporphyrinogen oxidas N/A no 0.975 0.826 0.699 0.0
O24164504 Protoporphyrinogen oxidas N/A no 0.973 0.869 0.681 0.0
O24163548 Protoporphyrinogen oxidas N/A no 0.922 0.757 0.292 7e-42
P56601471 Protoporphyrinogen oxidas yes no 0.906 0.866 0.275 5e-36
Q9AR38536 Protoporphyrinogen oxidas yes no 0.931 0.781 0.269 1e-35
P55826537 Protoporphyrinogen oxidas no no 0.931 0.780 0.264 7e-35
P32397470 Protoporphyrinogen oxidas yes no 0.911 0.872 0.229 6e-26
Q10062490 Protoporphyrinogen oxidas yes no 0.922 0.846 0.25 5e-17
Q54DT8532 Protoporphyrinogen oxidas yes no 0.906 0.766 0.246 5e-15
P50336477 Protoporphyrinogen oxidas yes no 0.913 0.861 0.246 7e-14
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1 Back     alignment and function desciption
 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/466 (69%), Positives = 374/466 (80%), Gaps = 27/466 (5%)

Query: 2   VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
           +FEAD RAGGKL+++ KDGLIWDEGANTMTES+ EV  L DDLGIREK Q PISQ KRY+
Sbjct: 70  LFEADSRAGGKLKTVVKDGLIWDEGANTMTESDEEVTSLFDDLGIREKLQLPISQNKRYI 129

Query: 62  VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
            R+G+P L+P+NP+ALL SN LSA+SK QI+LEPFLWKK + AKVS E+A+ESV  FF+R
Sbjct: 130 ARDGLPVLLPSNPVALLKSNILSAKSKLQIMLEPFLWKKHNGAKVSDENAQESVAEFFER 189

Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEK 181
           HFG+E VD+LIDPFVAGTS GDP+SL MRH+FPELWN+E R+GSVI+G I+SK S++KEK
Sbjct: 190 HFGKEFVDYLIDPFVAGTSGGDPQSLSMRHAFPELWNIENRFGSVISGFIQSKLSSKKEK 249

Query: 182 SAEAKGSSEKKRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
             E K SS KK R RGSFSF GGMQ                    VLSLSYSH+G    E
Sbjct: 250 GGE-KQSSNKKPRVRGSFSFQGGMQTLVDTICKEFGEDELKLQSEVLSLSYSHNGSLTSE 308

Query: 222 NWSLCS-SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
           NWS+ S SN   Q     +DAV++TAP+ NVKE+KI K  N F LDF+PEV  +PLSVII
Sbjct: 309 NWSVSSMSNSTIQDQ--PYDAVVVTAPINNVKELKIMKVENPFSLDFIPEVSCLPLSVII 366

Query: 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340
           TTFKK NV+RPLEGFGVLVPS EQ NGLKTLGTLFSSMMFPDR P D+YLYTTFVGGSRN
Sbjct: 367 TTFKKTNVKRPLEGFGVLVPSNEQHNGLKTLGTLFSSMMFPDRAPSDVYLYTTFVGGSRN 426

Query: 341 KELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMET 400
           +ELAKASTDELKQIV+SDL+QLLG EG+P FVNHF+WSKAFPLYGR+YDSVL AIEKME 
Sbjct: 427 RELAKASTDELKQIVSSDLQQLLGTEGEPTFVNHFYWSKAFPLYGRNYDSVLRAIEKMER 486

Query: 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKE 446
           +LPG FYAGNH+GGLSVGKSIASG KAAEL ISYLE    +KM +E
Sbjct: 487 DLPGLFYAGNHKGGLSVGKSIASGYKAAELAISYLE---SNKMTEE 529
Provides precursor for the mitochondrial and plastidic heme synthesis and the predominant chlorophyll synthesis in plastids.
Spinacia oleracea (taxid: 3562)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 4
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1 Back     alignment and function description
>sp|O24163|PPOC_TOBAC Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1 Back     alignment and function description
>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1 SV=1 Back     alignment and function description
>sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=PPOX1 PE=2 SV=1 Back     alignment and function description
>sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1 Back     alignment and function description
>sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168) GN=hemY PE=1 SV=1 Back     alignment and function description
>sp|Q10062|PPOX_SCHPO Protoporphyrinogen oxidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hem14 PE=3 SV=1 Back     alignment and function description
>sp|Q54DT8|PPOX_DICDI Protoporphyrinogen oxidase OS=Dictyostelium discoideum GN=ppox PE=3 SV=1 Back     alignment and function description
>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
225452146508 PREDICTED: protoporphyrinogen oxidase, m 0.988 0.875 0.770 0.0
255536963511 amine oxidase, putative [Ricinus communi 0.995 0.876 0.750 0.0
147788412 809 hypothetical protein VITISV_008740 [Viti 0.977 0.543 0.685 0.0
449521337502 PREDICTED: protoporphyrinogen oxidase, c 0.971 0.870 0.718 0.0
449441382497 PREDICTED: protoporphyrinogen oxidase, c 0.971 0.879 0.718 0.0
351726950502 protoporphyrinogen IX oxidase [Glycine m 0.973 0.872 0.684 0.0
357503827499 Protoporphyrinogen oxidase [Medicago tru 0.973 0.877 0.676 0.0
297811545512 HEMG2/MEE61 [Arabidopsis lyrata subsp. l 0.98 0.861 0.687 0.0
22326801508 protoporphyrinogen oxidase [Arabidopsis 0.977 0.866 0.693 0.0
57013006531 RecName: Full=Protoporphyrinogen oxidase 0.975 0.826 0.699 0.0
>gi|225452146|ref|XP_002263321.1| PREDICTED: protoporphyrinogen oxidase, mitochondrial [Vitis vinifera] gi|296090240|emb|CBI40059.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/466 (77%), Positives = 402/466 (86%), Gaps = 21/466 (4%)

Query: 2   VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
           ++EA+ERAGGKLRS+S+ GL+WDEGANTMTESE+EV  LLD+L +REKQQFPISQ KRY+
Sbjct: 43  LYEAEERAGGKLRSVSQHGLVWDEGANTMTESEIEVGSLLDNLRLREKQQFPISQNKRYI 102

Query: 62  VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
           VRNG+P L+P+NPIAL+ SN LSA+SKFQIILEPFLWKKSD +KVS +  KESVGGFFQR
Sbjct: 103 VRNGMPVLLPSNPIALIKSNILSAKSKFQIILEPFLWKKSDLSKVSDDHMKESVGGFFQR 162

Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEK 181
           HFG+EVVD+LIDPFVAGTS GDPESL M H+FPELWNLEKR+GS+IAGA+ SK SA++EK
Sbjct: 163 HFGKEVVDYLIDPFVAGTSGGDPESLSMHHTFPELWNLEKRFGSIIAGAVLSKLSAKREK 222

Query: 182 SAEAKGSSEKKRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
             E KGSSEKK+RQRGSFSF GGMQ                    VLSLSYSH  +SALE
Sbjct: 223 RGETKGSSEKKKRQRGSFSFQGGMQTLTDTLCKELGKDKLRLKSKVLSLSYSHGEKSALE 282

Query: 222 NWSLC-SSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
           NWS+  +SN  KQS  LSFDAVIMTAPLCNV+EMKI K GN F LDFLPEV Y+PLSVII
Sbjct: 283 NWSVAYASNPGKQSKDLSFDAVIMTAPLCNVREMKIMKKGNPFLLDFLPEVSYLPLSVII 342

Query: 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340
           TTFKKENV+RPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDR P DLYLYTTF+GGSRN
Sbjct: 343 TTFKKENVKRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRAPNDLYLYTTFIGGSRN 402

Query: 341 KELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMET 400
           +ELAKASTDELKQIVTSDLRQLLG EG+P FVNHF+WSKAFPL+G +YDSVLEAI+KME 
Sbjct: 403 RELAKASTDELKQIVTSDLRQLLGAEGEPTFVNHFYWSKAFPLFGHNYDSVLEAIDKMEK 462

Query: 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKE 446
           +LPGFFYAGNH+GGLSVGK+IASGCKAA+LVISYL  SSD KM KE
Sbjct: 463 DLPGFFYAGNHKGGLSVGKAIASGCKAADLVISYLNSSSDGKMFKE 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255536963|ref|XP_002509548.1| amine oxidase, putative [Ricinus communis] gi|223549447|gb|EEF50935.1| amine oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147788412|emb|CAN69962.1| hypothetical protein VITISV_008740 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449521337|ref|XP_004167686.1| PREDICTED: protoporphyrinogen oxidase, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441382|ref|XP_004138461.1| PREDICTED: protoporphyrinogen oxidase, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351726950|ref|NP_001236376.1| protoporphyrinogen IX oxidase [Glycine max] gi|4586308|dbj|BAA76348.1| protoporphyrinogen IX oxidase [Glycine max] Back     alignment and taxonomy information
>gi|357503827|ref|XP_003622202.1| Protoporphyrinogen oxidase [Medicago truncatula] gi|355497217|gb|AES78420.1| Protoporphyrinogen oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297811545|ref|XP_002873656.1| HEMG2/MEE61 [Arabidopsis lyrata subsp. lyrata] gi|297319493|gb|EFH49915.1| HEMG2/MEE61 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22326801|ref|NP_196926.2| protoporphyrinogen oxidase [Arabidopsis thaliana] gi|18700121|gb|AAL77672.1| AT5g14220/MUA22_22 [Arabidopsis thaliana] gi|20856027|gb|AAM26644.1| AT5g14220/MUA22_22 [Arabidopsis thaliana] gi|332004618|gb|AED92001.1| protoporphyrinogen oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|57013006|sp|Q94IG7.1|PPOCM_SPIOL RecName: Full=Protoporphyrinogen oxidase, chloroplastic/mitochondrial; Short=Protox II; AltName: Full=SO-POX2; Flags: Precursor gi|14349153|dbj|BAB60710.1| protoporphyrinogen oxidase-II [Spinacia oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
TAIR|locus:2145603508 HEMG2 [Arabidopsis thaliana (t 0.522 0.462 0.743 6.4e-166
UNIPROTKB|Q94IG7531 POX2 "Protoporphyrinogen oxida 0.524 0.444 0.747 2.9e-161
TIGR_CMR|GSU_0012469 GSU_0012 "protoporphyrinogen o 0.928 0.891 0.272 7e-38
TAIR|locus:2133397537 PPOX [Arabidopsis thaliana (ta 0.908 0.761 0.266 3.6e-29
TIGR_CMR|CHY_0481461 CHY_0481 "protoporphyrinogen o 0.364 0.355 0.272 2.5e-25
TIGR_CMR|BA_1072473 BA_1072 "protoporphyrinogen ox 0.366 0.348 0.272 1.6e-23
RGD|1310543477 Ppox "protoporphyrinogen oxida 0.92 0.867 0.254 1.9e-15
TIGR_CMR|BA_2418466 BA_2418 "protoporphyrinogen ox 0.36 0.347 0.261 1.9e-15
UNIPROTKB|E2RG94477 PPOX "Uncharacterized protein" 0.922 0.870 0.251 3.3e-15
UNIPROTKB|F1S197477 PPOX "Uncharacterized protein" 0.922 0.870 0.257 4.2e-15
TAIR|locus:2145603 HEMG2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 922 (329.6 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
 Identities = 177/238 (74%), Positives = 204/238 (85%)

Query:   206 QVLSLSYSHDGRSALENWSL-CSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFP 264
             +VLSLSY+   R   ENWSL C S+ E Q     +DAVIMTAPLCNVKEMK+ KGG  F 
Sbjct:   267 KVLSLSYNSGSRQ--ENWSLSCVSHNETQRQNPHYDAVIMTAPLCNVKEMKVMKGGQPFQ 324

Query:   265 LDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRV 324
             L+FLPE+ YMPLSV+ITTF KE V+RPLEGFGVL+PSKEQ++G KTLGTLFSSMMFPDR 
Sbjct:   325 LNFLPEINYMPLSVLITTFTKEKVKRPLEGFGVLIPSKEQKHGFKTLGTLFSSMMFPDRS 384

Query:   325 PKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLY 384
             P D++LYTTF+GGSRN+ELAKASTDELKQ+VTSDL++LLGVEG+P  VNH++W KAFPLY
Sbjct:   385 PSDVHLYTTFIGGSRNQELAKASTDELKQVVTSDLQRLLGVEGEPVSVNHYYWRKAFPLY 444

Query:   385 GRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDK 442
                YDSV+EAI+KME +LPGFFYAGNHRGGLSVGKSIASGCKAA+LVISYLE  S+DK
Sbjct:   445 DSSYDSVMEAIDKMENDLPGFFYAGNHRGGLSVGKSIASGCKAADLVISYLESCSNDK 502
GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0009536 "plastid" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009851 "auxin biosynthetic process" evidence=RCA
GO:0010229 "inflorescence development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
UNIPROTKB|Q94IG7 POX2 "Protoporphyrinogen oxidase, chloroplastic/mitochondrial" [Spinacia oleracea (taxid:3562)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0012 GSU_0012 "protoporphyrinogen oxidase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2133397 PPOX [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0481 CHY_0481 "protoporphyrinogen oxidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1072 BA_1072 "protoporphyrinogen oxidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
RGD|1310543 Ppox "protoporphyrinogen oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2418 BA_2418 "protoporphyrinogen oxidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|E2RG94 PPOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S197 PPOX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O24164PPOM_TOBAC1, ., 3, ., 3, ., 40.68110.97330.8690N/Ano
Q94IG7PPOCM_SPIOL1, ., 3, ., 3, ., 40.69950.97550.8267N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3.40.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020543001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (504 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037523001
SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (352 aa)
•    •• 0.980
GSVIVG00032163001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (422 aa)
• •  •• 0.975
GSVIVG00019218001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (475 aa)
• •  •• 0.970
GSVIVG00010463001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa)
     •• 0.951
GSVIVG00002992001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)
     •• 0.944
GSVIVG00022232001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (747 aa)
     •• 0.942
CHLH
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa)
     •• 0.929
GSVIVG00027816001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (338 aa)
• •   • 0.801
GSVIVG00029410001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (380 aa)
• •   • 0.792
GSVIVG00005756001
RecName- Full=Glutamyl-tRNA reductase; EC=1.2.1.70; (532 aa)
•     • 0.525

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
PLN02576496 PLN02576, PLN02576, protoporphyrinogen oxidase 0.0
TIGR00562462 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase 2e-58
COG1232444 COG1232, HemY, Protoporphyrinogen oxidase [Coenzym 3e-57
PRK11883451 PRK11883, PRK11883, protoporphyrinogen oxidase; Re 1e-44
pfam01593444 pfam01593, Amino_oxidase, Flavin containing amine 8e-37
PRK12416463 PRK12416, PRK12416, protoporphyrinogen oxidase; Pr 9e-17
PRK07233434 PRK07233, PRK07233, hypothetical protein; Provisio 8e-04
TIGR01292299 TIGR01292, TRX_reduct, thioredoxin-disulfide reduc 0.002
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase Back     alignment and domain information 
 Score =  629 bits (1624), Expect = 0.0
 Identities = 204/474 (43%), Positives = 269/474 (56%), Gaps = 49/474 (10%)

Query: 2   VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
           V EA +R GG + S+S+DG IW+EG N+   S+ E+   +D  G+R+   FP  Q  RYV
Sbjct: 41  VTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYV 99

Query: 62  VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
           V NG    +P+NPI L T + LSA  K +  L  F WK+           +ESVG F +R
Sbjct: 100 VWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPP-----PGREESVGEFVRR 154

Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEK 181
           H G EV + LIDPFV+G  AGDP SL M+ +FP+LWNLEKR GS+I GAIK+   A+K  
Sbjct: 155 HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNP 214

Query: 182 SAEAKGSSEKKRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
             E +     K + +   SF GG+Q                    VLSLS + DG     
Sbjct: 215 KPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDG----- 269

Query: 222 NWSL-CSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
            +SL   + + K +  ++  AV+MTAPL  V EM   K       D LPE  Y P++ + 
Sbjct: 270 GYSLTYDTPEGKVN--VTAKAVVMTAPLYVVSEMLRPKSPAA--ADALPEFYYPPVAAVT 325

Query: 281 TTFKKENVRR------PLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTF 334
           T++ KE V+R      PLEGFG L P K    G+KTLGT++SS +FPDR P+   L   +
Sbjct: 326 TSYPKEAVKRERLIDGPLEGFGQLHPRK---QGVKTLGTIYSSSLFPDRAPEGRVLLLNY 382

Query: 335 VGGSRNKELAKASTDELKQIVTSDLRQLLGVEG--DPAFVNHFFWSKAFPLYGRDYDSVL 392
           +GGSRN  +A AS +EL + V  DLR+LL   G   P  V    W KA P Y   +  VL
Sbjct: 383 IGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVL 442

Query: 393 EAIEKMETNL--PGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKML 444
           EA EKME +L  PG F  GN+RGG+++GK + SG +AA+LVISYLE S+  KM 
Sbjct: 443 EAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVISYLESSAYKKMF 496

Length = 496
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase Back     alignment and domain information
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase Back     alignment and domain information
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 450
KOG1276491 consensus Protoporphyrinogen oxidase [Coenzyme tra 100.0
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 100.0
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 100.0
PLN02576496 protoporphyrinogen oxidase 100.0
PRK12416463 protoporphyrinogen oxidase; Provisional 100.0
PRK11883451 protoporphyrinogen oxidase; Reviewed 100.0
PRK07208479 hypothetical protein; Provisional 100.0
PRK07233434 hypothetical protein; Provisional 100.0
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 100.0
PLN02268435 probable polyamine oxidase 100.0
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 99.98
PLN02487569 zeta-carotene desaturase 99.98
PLN02568539 polyamine oxidase 99.98
PLN03000 881 amine oxidase 99.97
PLN02612567 phytoene desaturase 99.97
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 99.97
PLN02529 738 lysine-specific histone demethylase 1 99.97
PLN02328 808 lysine-specific histone demethylase 1 homolog 99.97
PLN02676487 polyamine oxidase 99.96
KOG0685498 consensus Flavin-containing amine oxidase [Coenzym 99.96
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 99.96
PLN02976 1713 amine oxidase 99.95
COG1231450 Monoamine oxidase [Amino acid transport and metabo 99.95
KOG0029501 consensus Amine oxidase [Secondary metabolites bio 99.92
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 99.9
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 99.87
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 99.86
COG2907447 Predicted NAD/FAD-binding protein [General functio 99.8
TIGR02730493 carot_isom carotene isomerase. Members of this fam 99.77
TIGR00031377 UDP-GALP_mutase UDP-galactopyranose mutase. The ge 99.67
COG3349485 Uncharacterized conserved protein [Function unknow 99.6
COG1233487 Phytoene dehydrogenase and related proteins [Secon 99.51
PTZ00363443 rab-GDP dissociation inhibitor; Provisional 99.24
COG0562374 Glf UDP-galactopyranose mutase [Cell envelope biog 98.95
KOG4254561 consensus Phytoene desaturase [Coenzyme transport 98.49
PF1345068 NAD_binding_8: NAD(P)-binding Rossmann-like domain 98.28
PF00996438 GDI: GDP dissociation inhibitor; InterPro: IPR0182 97.77
PRK13977576 myosin-cross-reactive antigen; Provisional 97.66
PF07156368 Prenylcys_lyase: Prenylcysteine lyase; InterPro: I 97.34
KOG1439440 consensus RAB proteins geranylgeranyltransferase c 96.77
COG5044434 MRS6 RAB proteins geranylgeranyltransferase compon 94.82
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 91.23
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 88.14
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 84.84
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 82.82
TIGR03862376 flavo_PP4765 uncharacterized flavoprotein, PP_4765 81.02
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 80.75
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 80.56
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-54  Score=403.37  Aligned_cols=420  Identities=37%  Similarity=0.607  Sum_probs=340.3

Q ss_pred             CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChH---HHHHHHHHcCCCccccccC----CCCceEEEECCEEeecCC
Q 013082            1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEM---EVKGLLDDLGIREKQQFPI----SQYKRYVVRNGVPFLIPT   72 (450)
Q Consensus         1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~---~~~~l~~~lGl~~~~~~~~----~~~~~~~~~~G~~~~~p~   72 (450)
                      |||||++|+||+++|.+ -+|+.||.|+..+.+.++   ++++|+++||++++++..+    ..+++|+|++|++..+|.
T Consensus        40 ~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~  119 (491)
T KOG1276|consen   40 TLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPS  119 (491)
T ss_pred             EEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCc
Confidence            57999999999999954 679999999999997765   8999999999998765422    356799999999999999


Q ss_pred             ChhHhhhcc--cCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhh
Q 013082           73 NPIALLTSN--FLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMR  150 (450)
Q Consensus        73 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~  150 (450)
                      ++...+.+.  .+...-...++.++++....      ....|+||++|++|+||+++.+++++||++++|++|+.++|++
T Consensus       120 sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~------~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk  193 (491)
T KOG1276|consen  120 SLVGSLKFSLQPFGKPLLEAFLRELFRKKVS------DPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMK  193 (491)
T ss_pred             ccccccccccCcccchhHHHHHhhhccccCC------CCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHH
Confidence            887755432  22112223556676764322      4678999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc----c------C----
Q 013082          151 HSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----D------G----  216 (450)
Q Consensus       151 ~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----~------~----  216 (450)
                      +.|+.+|+.|+++||++.|+++..+.....+.++..++.....+++.++.++||++++++++..    +      +    
T Consensus       194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~  273 (491)
T KOG1276|consen  194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS  273 (491)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence            9999999999999999999997755444444444333333334667788999999999988742    1      1    


Q ss_pred             --Cc-cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCC
Q 013082          217 --RS-ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLE  293 (450)
Q Consensus       217 --~~-~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~  293 (450)
                        .. ..++|.+++.+.+ ..+....++++.|+|...++.++  ++..+.+.+++..++|.++.+|++.|.++.+..+.+
T Consensus       274 ~~sk~~~~~~~~tl~~~~-~~~~~~~~~~~~t~~~~k~a~ll--~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~  350 (491)
T KOG1276|consen  274 GNSKSRSGNWSLTLVDHS-GTQRVVVSYDAATLPAVKLAKLL--RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQ  350 (491)
T ss_pred             cccccccCCceeEeEcCC-CceeeeccccccccchHHhhhhc--cccchhhhhhhhcCCCCceEEEEEeccCcccccccc
Confidence              11 2456888887653 23455666667799999999997  767777888999999999999999998865555789


Q ss_pred             CeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCc--CCCCCHHHHHHHHHHHHHHHhCCCCCCce
Q 013082          294 GFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKE--LAKASTDELKQIVTSDLRQLLGVEGDPAF  371 (450)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~--~~~~~~eel~~~~~~~L~~~~~~~~~p~~  371 (450)
                      |||+++|. +..|+.+.+|+||||..||.+.|.+  .+++++++.+...  +...+.||+++.+.++|.+++++..+|..
T Consensus       351 GFG~LvPs-~~~~~~~~LG~ifdS~~Fp~~~~s~--~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~  427 (491)
T KOG1276|consen  351 GFGLLVPS-EPKNGFKTLGTIFDSMLFPDRSPSP--KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVS  427 (491)
T ss_pred             cceeeccC-CCCCCCceeEEEeecccCCCCCCCc--eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCccc
Confidence            99999996 3345789999999999999887755  6667777665443  34568999999999999999999999999


Q ss_pred             EEeeccCCCCCCCCCCHHHHHHHHHHHHhhCC--CeEEecCCcCCCChHHHHHHHHHHHHHHH
Q 013082          372 VNHFFWSKAFPLYGRDYDSVLEAIEKMETNLP--GFFYAGNHRGGLSVGKSIASGCKAAELVI  432 (450)
Q Consensus       372 ~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~--~l~~aG~~~~g~~~~~ai~SG~~aA~~i~  432 (450)
                      ..++-|++|+|||.+||.+.+.+++.+.+..+  +|+++|.|+.|.++.+||+||+++|.+++
T Consensus       428 ~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  428 VNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             ccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence            99999999999999999999998887777666  79999999999999999999999998875

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only] Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase Back     alignment and domain information
>COG3349 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PTZ00363 rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G Back     alignment and domain information
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function Back     alignment and domain information
>PRK13977 myosin-cross-reactive antigen; Provisional Back     alignment and domain information
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1 Back     alignment and domain information
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
1sez_A504 Crystal Structure Of Protoporphyrinogen Ix Oxidase 1e-171
2ivd_A478 Structure Of Protoporphyrinogen Oxidase From Myxoco 1e-34
3i6d_A470 Crystal Structure Of Ppo From Bacillus Subtilis Wit 3e-25
3nks_A477 Structure Of Human Protoporphyrinogen Ix Oxidase Le 3e-13
3lov_A475 Crystal Structure Of Putative Protoporphyrinogen Ox 2e-11
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase Length = 504 Back     alignment and structure 
Iteration: 1

 Score =  599 bits (1545), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/461 (64%), Positives = 349/461 (75%), Gaps = 23/461 (4%)
Query: 2   VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
           VFEA+ +AGGKLRS+S+DGLIWDEGANT TESE +V  L+D LG+REKQQFP+SQ KRY+
Sbjct: 41  VFEAEGKAGGKLRSVSQDGLIWDEGANTXTESEGDVTFLIDSLGLREKQQFPLSQNKRYI 100
Query: 62  VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
            RNG P L+P+NPI L+ SNFLS  SK Q +LEP LWK    ++VS  D+ ESV GFFQR
Sbjct: 101 ARNGTPVLLPSNPIDLIKSNFLSTGSKLQXLLEPILWKNKKLSQVS--DSHESVSGFFQR 158
Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIXXXXXXXXXX 181
           HFG+EVVD+LIDPFVAGT  GDP+SL   HSFPELWNLEKR+GSVI GAI          
Sbjct: 159 HFGKEVVDYLIDPFVAGTCGGDPDSLSXHHSFPELWNLEKRFGSVILGAIRSKLSPKNEK 218
Query: 182 XXXXXXXXXXXRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
                      +RQRGSFSFLGG Q                    VL LS S    SA++
Sbjct: 219 KQGPPKTSANKKRQRGSFSFLGGXQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAID 278
Query: 222 NWSLCS-SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
           +WS+ S S  ++QS   SFDAVI TAPLC+VK  KI K GN F L+F+PEV Y+PLSV+I
Sbjct: 279 SWSIISASPHKRQSEEESFDAVIXTAPLCDVKSXKIAKRGNPFLLNFIPEVDYVPLSVVI 338
Query: 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340
           TTFK+ENV+ PLEGFGVLVPSKEQQ+GLKTLGTLFSS  FPDR P ++YLYTTFVGGSRN
Sbjct: 339 TTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSXXFPDRAPNNVYLYTTFVGGSRN 398
Query: 341 KELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMET 400
           +ELAKAS  ELK+IVTSDL+QLLG EG+P +VNH +WSKAFPLYG +YDSVL+AI+K E 
Sbjct: 399 RELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKXEK 458
Query: 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDD 441
           NLPG FYAGNHRGGLSVGK+++SGC AA+LVISYLE  S D
Sbjct: 459 NLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVSTD 499
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus Xanthus With Acifluorfen Length = 478 Back     alignment and structure
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af Length = 470 Back     alignment and structure
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase Length = 477 Back     alignment and structure
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase (Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06 A Resolution Length = 475 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 1e-124
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 1e-102
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 8e-98
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 5e-87
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 1e-80
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 2e-33
3utf_A513 UDP-galactopyranose mutase; nucleotide binding, fl 1e-23
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 2e-12
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 2e-09
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 1e-06
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 1e-05
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 4e-05
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 5e-05
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 Back     alignment and structure
 Score =  369 bits (949), Expect = e-124
 Identities = 313/461 (67%), Positives = 366/461 (79%), Gaps = 23/461 (4%)

Query: 2   VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
           VFEA+ +AGGKLRS+S+DGLIWDEGANTMTESE +V  L+D LG+REKQQFP+SQ KRY+
Sbjct: 41  VFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYI 100

Query: 62  VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
            RNG P L+P+NPI L+ SNFLS  SK Q++LEP LWK    ++VS     ESV GFFQR
Sbjct: 101 ARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSH--ESVSGFFQR 158

Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEK 181
           HFG+EVVD+LIDPFVAGT  GDP+SL M HSFPELWNLEKR+GSVI GAI+SK S + EK
Sbjct: 159 HFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEK 218

Query: 182 SAEAKGSSEKKRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
                 +S  K+RQRGSFSFLGGMQ                    VL LS S    SA++
Sbjct: 219 KQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAID 278

Query: 222 NWSLCSSNQEK-QSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
           +WS+ S++  K QS   SFDAVIMTAPLC+VK MKI K GN F L+F+PEV Y+PLSV+I
Sbjct: 279 SWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVI 338

Query: 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340
           TTFK+ENV+ PLEGFGVLVPSKEQQ+GLKTLGTLFSSMMFPDR P ++YLYTTFVGGSRN
Sbjct: 339 TTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRN 398

Query: 341 KELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMET 400
           +ELAKAS  ELK+IVTSDL+QLLG EG+P +VNH +WSKAFPLYG +YDSVL+AI+KME 
Sbjct: 399 RELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEK 458

Query: 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDD 441
           NLPG FYAGNHRGGLSVGK+++SGC AA+LVISYLE  S D
Sbjct: 459 NLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVSTD 499
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 Back     alignment and structure
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 100.0
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 100.0
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 100.0
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 100.0
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 100.0
4gde_A513 UDP-galactopyranose mutase; flavin adenine dinucle 100.0
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 100.0
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 100.0
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 100.0
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 99.98
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 99.97
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 99.97
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 99.95
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 99.94
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 99.94
1v0j_A399 UDP-galactopyranose mutase; flavoprotein, isomeras 99.94
2bi7_A384 UDP-galactopyranose mutase; FAD, flavoprotein, iso 99.94
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 99.93
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 99.93
1i8t_A367 UDP-galactopyranose mutase; rossman fold, FAD, con 99.93
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 99.93
3hdq_A397 UDP-galactopyranose mutase; substrate and inhibito 99.91
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 99.91
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 99.91
4gut_A776 Lysine-specific histone demethylase 1B; histone de 99.9
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 99.9
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 99.89
3ayj_A721 Pro-enzyme of L-phenylalanine oxidase; amino acid 99.78
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 99.69
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 99.53
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 99.49
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 99.22
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 99.01
1vg0_A650 RAB proteins geranylgeranyltransferase component A 98.98
2e1m_A376 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 98.39
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 97.95
2e1m_B130 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 97.94
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 94.65
3fpz_A326 Thiazole biosynthetic enzyme; FAD, mitochondrion, 88.36
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 84.95
3ihg_A 535 RDME; flavoenzyme, anthracycline, polyketide biosy 83.51
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
Probab=100.00  E-value=4e-47  Score=388.36  Aligned_cols=437  Identities=69%  Similarity=1.138  Sum_probs=330.1

Q ss_pred             CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhc
Q 013082            1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS   80 (450)
Q Consensus         1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~   80 (450)
                      +|||+++++|||++|.+.+|+.+|.|+|+++..++.+.++++++|+.+.+.++.....+|++.+|+.+.+|.++..++..
T Consensus        40 ~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  119 (504)
T 1sez_A           40 TVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKS  119 (504)
T ss_dssp             EEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHS
T ss_pred             EEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhcc
Confidence            58999999999999999999999999999987788999999999998766554433457778899999999888777776


Q ss_pred             ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHHH
Q 013082           81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE  160 (450)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~  160 (450)
                      .++++.++++++.+.+.........  ...+++|+.+|++++++++++++++.|++.++|+.+++++|+.++++.++.++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  197 (504)
T 1sez_A          120 NFLSTGSKLQMLLEPILWKNKKLSQ--VSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLE  197 (504)
T ss_dssp             SSSCHHHHHHHHTHHHHC------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHH
T ss_pred             ccCCHHHHHHHhHhhhccCcccccc--cCCCCccHHHHHHHHcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHH
Confidence            7777777777766554322211000  12457999999999999999999999999999999999999999999999988


Q ss_pred             HhcCChHHHHHhhhhhhhhhhh--hhhcCchhhhcCCccceEeccchHHHHHhcccc--------CC------ccCCC--
Q 013082          161 KRYGSVIAGAIKSKFSARKEKS--AEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------SALEN--  222 (450)
Q Consensus       161 ~~~gsl~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~~~~~--  222 (450)
                      +.+|+++.|++...+.......  ......  ......+.++++||+++|+++|+..        +.      ..+++  
T Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~  275 (504)
T 1sez_A          198 KRFGSVILGAIRSKLSPKNEKKQGPPKTSA--NKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDS  275 (504)
T ss_dssp             HHTSCHHHHHHHHTTC----------CCCS--CCSTTCSCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSS
T ss_pred             HHhCCHHHHHHHhhhcccccccccccchhh--ccccCCceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCc
Confidence            8889888877654321110000  000000  0001234679999999999887532        11      12344  


Q ss_pred             ----eEEEecCCCccc-cceecCEEEEcCChhhhhhhhhccCC-CCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCee
Q 013082          223 ----WSLCSSNQEKQS-LGLSFDAVIMTAPLCNVKEMKITKGG-NLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFG  296 (450)
Q Consensus       223 ----~~v~~~~g~~~~-~~~~ad~VI~t~P~~~~~~ll~~~~~-~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g  296 (450)
                          |.|++.++++.. +++.||+||+|+|++.+.+++ .++. .+.....+.+++|.++.+|++.|++++|+.+..+++
T Consensus       276 ~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll-~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~  354 (504)
T 1sez_A          276 AIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMK-IAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFG  354 (504)
T ss_dssp             SSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSE-EESSSSBCCCTTSCCCCEEEEEEEEEEEEGGGBSSCCCSSE
T ss_pred             ccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHh-hcccCCcccHHHHhcCCCCceEEEEEEEchhhcCCCCCceE
Confidence                677765321111 378999999999999999986 2111 111113377889999999999999988865667788


Q ss_pred             EEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeec
Q 013082          297 VLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFF  376 (450)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~  376 (450)
                      +++++.+..++..+.+++|.|..+|..+|+|+.+|++|+++..+..+..++++++++.++++|+++++...+|.++.+++
T Consensus       355 ~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~  434 (504)
T 1sez_A          355 VLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLY  434 (504)
T ss_dssp             EECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEE
T ss_pred             EEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeE
Confidence            88876542112356788888878887778888888999987766677788999999999999999998776788999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcccchhh
Q 013082          377 WSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDK  442 (450)
Q Consensus       377 w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~~~~~  442 (450)
                      |.+++|+|.+||...++.++...++.+||||||+++.|.++++|+.||.+||++|++.+.....++
T Consensus       435 w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il~~l~~~~~~~  500 (504)
T 1sez_A          435 WSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVSTDS  500 (504)
T ss_dssp             EEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC---
T ss_pred             CCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999999999877666655566788999999999888899999999999999999997765544
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Back     alignment and structure
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 450
d1seza2112 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {T 1e-37
d2ivda2108 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {M 9e-32
d1seza1373 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox 8e-30
d1seza1373 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox 2e-15
d2ivda1347 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox 1e-14
d2ivda1347 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox 2e-04
d2dw4a2449 c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist 1e-10
d2v5za1383 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H 8e-08
d2iida1370 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M 1e-04
d2gjca1311 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th 3e-04
d1vdca1192 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase 0.002
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 112 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  130 bits (329), Expect = 1e-37
 Identities = 90/111 (81%), Positives = 103/111 (92%)

Query: 273 YMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYT 332
           Y+PLSV+ITTFK+ENV+ PLEGFGVLVPSKEQQ+GLKTLGTLFSSMMFPDR P ++YLYT
Sbjct: 2   YVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYT 61

Query: 333 TFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPL 383
           TFVGGSRN+ELAKAS  ELK+IVTSDL+QLLG EG+P +VNH +WSKAFPL
Sbjct: 62  TFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPL 112
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 108 Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 Back     information, alignment and structure
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 Back     information, alignment and structure
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 99.81
d2ivda2108 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 99.78
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 99.78
d1seza2112 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 99.76
d2bi7a1314 UDP-galactopyranose mutase, N-terminal domain {Kle 99.62
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 99.49
d1i8ta1298 UDP-galactopyranose mutase, N-terminal domain {Esc 99.35
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 99.02
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 98.95
d2v5za2112 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 98.39
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 98.38
d2dw4a3109 Lysine-specific histone demethylase 1, LSD1 {Human 98.22
d2iida2113 L-aminoacid oxidase {Malayan pit viper (Calloselas 98.18
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 98.15
d1b5qa2112 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 98.15
d1vg0a1491 Rab escort protein 1 {Rat (Rattus norvegicus) [Tax 97.29
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 97.16
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 96.92
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 94.29
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 88.33
d2gjca1311 Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( 81.5
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.81  E-value=1.3e-18  Score=162.80  Aligned_cols=243  Identities=26%  Similarity=0.419  Sum_probs=158.7

Q ss_pred             CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccC-CCCceEEEECCEEeecCCChhHhhh
Q 013082            1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPI-SQYKRYVVRNGVPFLIPTNPIALLT   79 (450)
Q Consensus         1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~-~~~~~~~~~~G~~~~~p~~~~~~~~   79 (450)
                      +|||+++++|||++|++.+|+.+|.|++++...++.+.++++++|+...+.... .....+.................+.
T Consensus        27 ~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (347)
T d2ivda1          27 VLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLA  106 (347)
T ss_dssp             EEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHT
T ss_pred             EEEecCCCCCceEEEEeeCCEEEecCceEEecCCHHHHHHHHHhcccccceeccccccceeeeccccccccccchhhhhh
Confidence            589999999999999999999999999999988899999999999987765432 2233344445555544445555555


Q ss_pred             cccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHH
Q 013082           80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNL  159 (450)
Q Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~  159 (450)
                      ..........+...+.+....       ......++.+++.+............|+....++.++...+....++.+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
T d2ivda1         107 SDILPLGARLRVAGELFSRRA-------PEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKM  179 (347)
T ss_dssp             CSSSCHHHHHHHHGGGGCCCC-------CTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHH
T ss_pred             hhhccchhhHHHHhhhhhhhc-------cccccccHHHHHHhhhhcchhccccchhhhhhhccccchhhHHHHHHHHHHh
Confidence            455554444555544443211       2456789999999888887788888888888888888888877777776655


Q ss_pred             HHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------C------CccCCCeEEE
Q 013082          160 EKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G------RSALENWSLC  226 (450)
Q Consensus       160 ~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~------~~~~~~~~v~  226 (450)
                      .....+................. ....   ........+.++||++.+++++...       +      ...+++++|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~g~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~  255 (347)
T d2ivda1         180 EREHRSLILGAIRAQKAQRQAAL-PAGT---APKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLI  255 (347)
T ss_dssp             HHHHSSHHHHHHHHHHHHTCC-----CC---SCCCCCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEE
T ss_pred             hhhccchhhhhhhccchhccccc-cccc---cccccCcccccCCchHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEE
Confidence            44444432222211100000000 0000   0012234568899999998776421       1      2245667777


Q ss_pred             ecCCCccccceecCEEEEcCChhhhhhhh
Q 013082          227 SSNQEKQSLGLSFDAVIMTAPLCNVKEMK  255 (450)
Q Consensus       227 ~~~g~~~~~~~~ad~VI~t~P~~~~~~ll  255 (450)
                      +.+++ +.++++||+||+|+|++.+++||
T Consensus       256 ~~~~~-~~~~~~ad~VV~a~p~~~~~~Ll  283 (347)
T d2ivda1         256 IEEHG-RRAELSVAQVVLAAPAHATAKLL  283 (347)
T ss_dssp             EEETT-EEEEEECSEEEECSCHHHHHHHH
T ss_pred             EEcCC-eEEEEECCEEEECCCHHHHHHhc
Confidence            65442 34578999999999999999997
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure