Citrus Sinensis ID: 013090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHccccccccccEEEcccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHccccEEEEEcccccccEEEEEcccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccEcccHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccEccccccccHHHHHHHHHHccccHHcccccccccccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccEEEccccccccccccccEEccc
Coil and Loop (DISEMBL)
melsmsyshdsddEYEKLIRrmnpprvvidneacknaTVIRVDSANKHGILLEVVQVLTDLNLIVTKAyissdgcwfmdvfnvtdedgnkitdeGILDYIRKclgpeacfassmrsvgvkqsmdhtaieltgsdrpglLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQvtdeetggaisdpeRLSVIKELLCNVlkgsnksglaktevsQDVTHTERRLHQMMFAdrdyertgtdddsldekqrpnvnvvncydkdysvvtitskdrpklvfDTVCTLTDMQYVVFHanidaegpeAYQEYFIRhidgspvksdaERERVIQCLKAAIERRVSEglklelcttdrvgLLSNVTRIFRENSLTVTRAEVatksgkavntfyvggasgypvdaKIIDSIRQSIGQTILKvkgnpedlksasqdsptrflfgglfksrsfvnfglvrscs
Flexible Loop (DISEMBL)
melsmsyshdsddEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALmqvtdeetggaisdperLSVIKELLCNVLkgsnksglaktevsqdvthterRLHQMMFADRDYertgtdddsldekqrpnvnvvncydkdysvvtitskdrpkLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDgspvksdaERERVIQCLKAAIerrvseglklelcttdrvgllsnvtrifrensltvtraevatksgkavntfyvGGASGYPVDAKIIDSIRQSIGQTILKVkgnpedlksasqDSPTRFLFgglfksrsfvnfglvrscs
Low Complexity Region (SEG)
MELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS
Disordered region (IsUnstruct)
************************PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGV*****HTAIELTG*DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE*TGGAIS*PERLSVIKELLCNVLK**************************************************VNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVK*DAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKV****************RFLFGGLFKSRSFVNFGLV****
Disordered Region (DISOPRED)
*******SHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT***************************FKSRSFVNFGLVRSC*
Disordered Region (DISEMBL)
*************EYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK**************TERRLHQMMFADRDY***********EKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNP********DSPTRFLFGGLFKSRSFVNFGLVRSCS
Disordered Region (DISPRO)
****MSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE***************MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYER**********KQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGN***********PTRFLFGGLFKSRSFVNFGLVRSCS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	449	2.2.26 [Sep-21-2011]
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.178	0.085	0.432	6e-09
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.207	0.097	0.391	1e-08
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.122	0.058	0.382	3e-08
Q2N784	919	[Protein-PII] uridylyltra	yes	no	0.120	0.058	0.4	1e-07
Q89VX9	929	[Protein-PII] uridylyltra	yes	no	0.164	0.079	0.426	2e-07
Q3SWE0	925	[Protein-PII] uridylyltra	yes	no	0.173	0.084	0.392	3e-07
Q1QRM1	931	[Protein-PII] uridylyltra	yes	no	0.160	0.077	0.424	3e-07
Q8DBG3	873	[Protein-PII] uridylyltra	yes	no	0.400	0.206	0.257	4e-07
Q7MIF8	873	[Protein-PII] uridylyltra	yes	no	0.400	0.206	0.257	8e-07
A4YKP3	931	[Protein-PII] uridylyltra	yes	no	0.195	0.094	0.359	1e-06

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 50/81 (61%)

Query: 24  PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
           PPRV+IDN A    TVI V+  ++ G+L ++ + LT+L L ++ A IS+ G   +DVF V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 84  TDEDGNKITDEGILDYIRKCL 104
            D  G K+T E  L  IR+ L
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Azospirillum brasilense (taxid: 192)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 12  DDEYEKLIRRMN----PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTK 67
           D  +    RRM     PPRVVIDN A    TVI V+  ++ G+L +V   L+  +L ++ 
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898

Query: 68  AYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCL 104
           A+I++ G   +DVF V D  G KITD   L  +R+ L
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETL 935

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query: 24  PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
           PPRV++DN+A K  TVI ++  ++ G L  V + LTD+ + ++ A +S+ G   +D F V
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884

Query: 84  TDEDGNKITDEGILDYIRKCL 104
            D  G KI     L  IR+ L
Sbjct: 885 KDVFGMKIVHRAKLAQIREAL 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis (strain HTCC2594) GN=glnD PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%)

Query: 25  PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
           PRV+ DN+A    TVI V++ ++  +L  + + L +  +IV  A+I++ G    D F VT
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884

Query: 85  DEDGNKITDEGILDYIRKCL 104
           D  G KITDE  +D IR+ L
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=glnD PE=3 SV=2

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
           +T IE++G DRPGLL E++  ++ L  N+ SA V T   RA  +  VTD   G  I+ P 
Sbjct: 848 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQINAPT 906

Query: 185 RLSVIKELLCNVLKG 199
           R S IK  L +V+ G
Sbjct: 907 RQSAIKSALTHVMAG 921

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
           HT IE++G DRPGLL +++  ++ L  N+ SA V T   RA  +  VTD   G  I+ P 
Sbjct: 847 HTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGARITAPT 905

Query: 185 RLSVIKELLCNVLKGSNKS 203
           R + IK  L ++L   N +
Sbjct: 906 RQAAIKRALVHLLASGNTA 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
           HT IE++G DRPGLL +++A ++ L  N+ SA V T   RA  +  VTD   G  I+ P 
Sbjct: 849 HTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARITAPT 907

Query: 185 RLSVIKELLCNVL 197
           R + IK  L ++L
Sbjct: 908 RQAAIKRALIHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8DBG3|GLND_VIBVU [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=glnD PE=3 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 22/202 (10%)

Query: 16  EKLIRRMNP--PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI-SS 72
           E ++R  NP  P V++  +A +  T + V + ++H +   VV  L   N  V  A I SS
Sbjct: 668 EHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSS 727

Query: 73  DGCWFMDVFNVTDEDGNKI---TDEGILDYIRKCLGPEACFASSMRSVGVK--------- 120
              + +D F V D+ G  I     + ++ ++   L          R    K         
Sbjct: 728 KDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTK 787

Query: 121 ------QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 174
                 +S   T +EL   D PGLL+   A    +  N+  A++ T   RA  L  +T  
Sbjct: 788 VDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTS- 846

Query: 175 ETGGAISDPERLSVIKELLCNV 196
           E GG +S+ + L + ++L+ N+
Sbjct: 847 ENGGRLSEEQELQLREKLIHNI 868

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Vibrio vulnificus (taxid: 672)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q7MIF8|GLND_VIBVY [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain YJ016) GN=glnD PE=3 SV=1

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 22/202 (10%)

Query: 16  EKLIRRMNP--PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI-SS 72
           E ++R  NP  P V++  +A +  T + V + ++H +   VV  L   N  V  A I SS
Sbjct: 668 EHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSS 727

Query: 73  DGCWFMDVFNVTDEDGNKI---TDEGILDYIRKCLGPEACFASSMRSVGVK--------- 120
              + +D F V D+ G  I     + ++ ++   L          R    K         
Sbjct: 728 KDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLTDGRPTKVKTRRTPYKLQHFKVKTK 787

Query: 121 ------QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 174
                 +S   T +EL   D PGLL+   A    +  N+  A++ T   RA  L  +T  
Sbjct: 788 VDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTS- 846

Query: 175 ETGGAISDPERLSVIKELLCNV 196
           E GG +S+ + L + ++L+ N+
Sbjct: 847 ENGGRLSEEQELQLREKLIHNI 868

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glnD PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 175
           S+  + S  +T IE++G DRPGLL E++  ++ L  N+ SA V T   RA  +  VTD  
Sbjct: 840 SINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-L 898

Query: 176 TGGAISDPERLSVIKELLCNVLKGSNKSG 204
            G  I+ P R + IK  L ++L   + + 
Sbjct: 899 LGAQINAPTRQAAIKSALLHLLASEDAAA 927

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
224108635	443	predicted protein [Populus trichocarpa]	0.986	1.0	0.862	0.0
255541934	443	amino acid binding protein, putative [Ri	0.986	1.0	0.860	0.0
356499934	449	PREDICTED: uncharacterized protein LOC10	0.995	0.995	0.837	0.0
356495189	449	PREDICTED: uncharacterized protein LOC10	0.995	0.995	0.830	0.0
224101597	443	predicted protein [Populus trichocarpa]	0.986	1.0	0.826	0.0
356499936	433	PREDICTED: uncharacterized protein LOC10	0.957	0.993	0.812	0.0
357487953	451	ACR4 [Medicago truncatula] gi|355515599|	0.986	0.982	0.809	0.0
449452827	444	PREDICTED: uncharacterized protein LOC10	0.982	0.993	0.802	0.0
312281803	451	unnamed protein product [Thellungiella h	0.991	0.986	0.782	0.0
42572033	455	ACT domain-containing protein [Arabidops	1.0	0.986	0.769	0.0

>gi|224108635|ref|XP_002314917.1| predicted protein [Populus trichocarpa] gi|222863957|gb|EEF01088.1| predicted protein [Populus trichocarpa]

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/445 (86%), Positives = 413/445 (92%), Gaps = 2/445 (0%)

Query: 5   MSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 64
           MS+S+D DDEYEKL RR+NPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI
Sbjct: 1   MSFSNDMDDEYEKLFRRLNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 60

Query: 65  VTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMD 124
           +TKAYISSDG WFMDVFNVTD DGNK+TDE ILDYI K LGPE+CF SSMRSVGVKQSMD
Sbjct: 61  ITKAYISSDGGWFMDVFNVTDPDGNKVTDEAILDYITKSLGPESCFTSSMRSVGVKQSMD 120

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
           HTAIELTGSDRPGLLSEVSAVLTHLKCNVV+AEVWTHN RAAA+MQVTDEETG AI DPE
Sbjct: 121 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVNAEVWTHNMRAAAVMQVTDEETGSAIIDPE 180

Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
           +LS IKELLCNVLKGSNKS  AKT VS  VTHTERRLHQMMFADRDYER   ++D LDEK
Sbjct: 181 KLSRIKELLCNVLKGSNKSRGAKTVVSHGVTHTERRLHQMMFADRDYER--ANNDELDEK 238

Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
           QRPNV+VVN  +KDYSVVTITSKDRPKL+FDTVCTLTDM+YVVFHANIDAEGPEA+QEY+
Sbjct: 239 QRPNVSVVNWCEKDYSVVTITSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAHQEYY 298

Query: 305 IRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364
           I+HIDGSPVKS+AER+R+IQCL+AAIERRVSEGLKLELCTTDRVGLLS+VTRIFRENSLT
Sbjct: 299 IKHIDGSPVKSEAERQRIIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLT 358

Query: 365 VTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDS 424
           VTRAEV T++GKAVNTFYV  ASGYPVDAK IDSIRQ+IGQTILKVK +PE+ K  SQ+S
Sbjct: 359 VTRAEVTTRAGKAVNTFYVSDASGYPVDAKTIDSIRQAIGQTILKVKSSPEEQKPVSQES 418

Query: 425 PTRFLFGGLFKSRSFVNFGLVRSCS 449
           PTRFLFGGLFKSRSFVNFGLVRS S
Sbjct: 419 PTRFLFGGLFKSRSFVNFGLVRSYS 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541934|ref|XP_002512031.1| amino acid binding protein, putative [Ricinus communis] gi|223549211|gb|EEF50700.1| amino acid binding protein, putative [Ricinus communis]

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/445 (86%), Positives = 406/445 (91%), Gaps = 2/445 (0%)

Query: 5   MSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 64
           MS+S+D DDEYEKL RR+NPPRVVIDNE+CKNATVIRVDSANKHGILLEVVQVLTDLNLI
Sbjct: 1   MSFSNDMDDEYEKLFRRLNPPRVVIDNESCKNATVIRVDSANKHGILLEVVQVLTDLNLI 60

Query: 65  VTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMD 124
           +TKAYISSDG WFMDVFNV D+DGNKITDE ILDYIRK LGPE+ F SSMRSVGV  SMD
Sbjct: 61  ITKAYISSDGGWFMDVFNVRDQDGNKITDEAILDYIRKSLGPESRFTSSMRSVGVIPSMD 120

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
           HT+IELTGSDRPGLLSE+SAVLTHLKCNVVSAEVWTHN RAAA+MQVTDEETG AI DPE
Sbjct: 121 HTSIELTGSDRPGLLSELSAVLTHLKCNVVSAEVWTHNMRAAAVMQVTDEETGSAIIDPE 180

Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
           RLS IKELLCNVLKGSNK   AKT VS  VTHTERRLHQMMFADRDYER   DD+ LDEK
Sbjct: 181 RLSRIKELLCNVLKGSNKFRGAKTVVSHGVTHTERRLHQMMFADRDYER--ADDEVLDEK 238

Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
           QRPNV+VVN YDKDYSVVTI SKDRPKL+FDTVCTLTDM+YVVFHANIDAEGPEAYQEY+
Sbjct: 239 QRPNVSVVNWYDKDYSVVTIRSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAYQEYY 298

Query: 305 IRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364
           IRHIDGSPVKSDAER RVIQCL+AAIERRVSEGLKLELCTTDRVGLLS+VTRIFRENSLT
Sbjct: 299 IRHIDGSPVKSDAERMRVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLT 358

Query: 365 VTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDS 424
           VTRAEV T+ GKA+NTFYV  ASGY VD K I+SIRQ IGQTILKVK NP++LK  SQ+S
Sbjct: 359 VTRAEVTTRDGKAINTFYVRDASGYLVDGKTIESIRQVIGQTILKVKSNPDELKPVSQES 418

Query: 425 PTRFLFGGLFKSRSFVNFGLVRSCS 449
           PTRFLFGGLFKSRSFVNFGLVRS S
Sbjct: 419 PTRFLFGGLFKSRSFVNFGLVRSYS 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499934|ref|XP_003518790.1| PREDICTED: uncharacterized protein LOC100813551 isoform 1 [Glycine max]

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/448 (83%), Positives = 407/448 (90%), Gaps = 1/448 (0%)

Query: 2   ELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDL 61
           E++MS+SH  DDEYEKL RRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQ+LTDL
Sbjct: 3   EVNMSFSHYMDDEYEKLFRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQILTDL 62

Query: 62  NLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQ 121
           NLI+TKAYISSDG WFMDVFNVT +DGNK+TDE ILDYIRK LGPE+C  S MRSVGVKQ
Sbjct: 63  NLIITKAYISSDGGWFMDVFNVTGQDGNKVTDEAILDYIRKSLGPESCVTSPMRSVGVKQ 122

Query: 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 181
           +MDHTAIEL G+DRPGLLSEVSAVLT+LKCN+++AEVWTHNTRAAA+M VTDEETG AIS
Sbjct: 123 TMDHTAIELMGTDRPGLLSEVSAVLTNLKCNILNAEVWTHNTRAAAVMHVTDEETGSAIS 182

Query: 182 DPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSL 241
           DP+RLS+IKELLCNVL G NK   AKT V+ + THTERRLHQMMFADRDYER   DDD  
Sbjct: 183 DPQRLSIIKELLCNVLGGGNKKRGAKTVVTDEATHTERRLHQMMFADRDYERVN-DDDDF 241

Query: 242 DEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQ 301
            EKQRPNVNVVN  DKDYSVVTI  KDRPKL+FDTVCTLTDMQYVVFHANIDAEGPEAYQ
Sbjct: 242 AEKQRPNVNVVNWSDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQ 301

Query: 302 EYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFREN 361
           EY+I+HIDGSPVKSDAER+RVIQCL AAIERRVSEGLKLELCTTDRVGLLS+VTRIFREN
Sbjct: 302 EYYIKHIDGSPVKSDAERQRVIQCLAAAIERRVSEGLKLELCTTDRVGLLSDVTRIFREN 361

Query: 362 SLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSAS 421
           SLTVTRAEVATK GKAVNTFYV GASG+PVD+K I+SIRQ+IG TILKVKG+PE++KS  
Sbjct: 362 SLTVTRAEVATKGGKAVNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEEMKSVP 421

Query: 422 QDSPTRFLFGGLFKSRSFVNFGLVRSCS 449
           QDSPTR LF GLFKSRSFVNFGLV+S S
Sbjct: 422 QDSPTRSLFSGLFKSRSFVNFGLVKSYS 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495189|ref|XP_003516462.1| PREDICTED: uncharacterized protein LOC100787134 [Glycine max]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/448 (83%), Positives = 406/448 (90%), Gaps = 1/448 (0%)

Query: 2   ELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDL 61
           E++MS+SH  DDEYEKL RRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQ+LTDL
Sbjct: 3   EVNMSFSHYMDDEYEKLFRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQILTDL 62

Query: 62  NLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQ 121
           NLI+TKAYISSDG WFMDVFNVT +DGNK+TDE ILDYIRK LGPE+C  S MRSVGVKQ
Sbjct: 63  NLIITKAYISSDGGWFMDVFNVTGQDGNKVTDEAILDYIRKSLGPESCVTSPMRSVGVKQ 122

Query: 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 181
           + DH AIEL G+DRPGLLSEVSAVLT+LKCN+V+AEVWTHNTRAAA+M VTDEE+G AI+
Sbjct: 123 TTDHIAIELMGTDRPGLLSEVSAVLTNLKCNIVNAEVWTHNTRAAAVMHVTDEESGSAIT 182

Query: 182 DPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSL 241
           DP+RLS+IKELLCNVL G NK   AKT V+ + THTERRLHQMMFADRDYER   DDD  
Sbjct: 183 DPQRLSIIKELLCNVLGGGNKKRGAKTVVTDEATHTERRLHQMMFADRDYERVN-DDDDF 241

Query: 242 DEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQ 301
           DEKQRPNVNVVN  DKDYSVVTI  KDRPKL+FDTVCTLTDMQYVVFHANIDAEGPEAYQ
Sbjct: 242 DEKQRPNVNVVNWSDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQ 301

Query: 302 EYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFREN 361
           EY+I+HIDGSPVKSDAER+RVIQCL AAI+RRVSEGLKLELCTTDRVGLLS+VTRIFREN
Sbjct: 302 EYYIKHIDGSPVKSDAERQRVIQCLAAAIQRRVSEGLKLELCTTDRVGLLSDVTRIFREN 361

Query: 362 SLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSAS 421
           SLTVTRAEVATK GKAVNTFYV GASG+PVD+K I+SIRQ+IG TILKVKG+PE++KS  
Sbjct: 362 SLTVTRAEVATKGGKAVNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEEMKSVP 421

Query: 422 QDSPTRFLFGGLFKSRSFVNFGLVRSCS 449
           QDSPTR LF GLFKSRSFVNFGLV+S S
Sbjct: 422 QDSPTRSLFSGLFKSRSFVNFGLVKSYS 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101597|ref|XP_002312346.1| predicted protein [Populus trichocarpa] gi|222852166|gb|EEE89713.1| predicted protein [Populus trichocarpa]

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/445 (82%), Positives = 409/445 (91%), Gaps = 2/445 (0%)

Query: 5   MSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 64
           MS+S+D DDEYEKL RR+NPPRVVIDNEACKNATVIRVDSANKHG LLEVVQVLTDLNLI
Sbjct: 1   MSFSNDLDDEYEKLFRRLNPPRVVIDNEACKNATVIRVDSANKHGKLLEVVQVLTDLNLI 60

Query: 65  VTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMD 124
           +TKAY+SSDG WFMDVFNVTD+DGNK+TDE ILDYI K LG E+CF SSM S GVKQS+D
Sbjct: 61  ITKAYVSSDGGWFMDVFNVTDQDGNKVTDEAILDYITKSLGTESCFTSSMGSFGVKQSID 120

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
           HTAIELTGSDRPGLLSEVSAVL HLKCNV++AEVWTHN RAAA+MQVTD+ETG AI+DPE
Sbjct: 121 HTAIELTGSDRPGLLSEVSAVLAHLKCNVLNAEVWTHNMRAAAVMQVTDDETGSAITDPE 180

Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
           +LS +KELLCNVLKGSNK   A+T VS  VTHTERRLHQMMFADRDYER   ++D LDEK
Sbjct: 181 KLSRVKELLCNVLKGSNKYRGARTVVSHGVTHTERRLHQMMFADRDYER--ANNDVLDEK 238

Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
           QRPNV+VVN Y+KDYSV+TI SKDRPKL+FDTVCTLTDM+YVVFHANIDAEGPEA+QEY+
Sbjct: 239 QRPNVSVVNWYEKDYSVITIRSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAHQEYY 298

Query: 305 IRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364
           I+H+DGSPVKS+AER+R+IQCL+AAIERRVSEGLKLELCT DR+GLLS+VTRIFRENSLT
Sbjct: 299 IKHVDGSPVKSEAERQRIIQCLEAAIERRVSEGLKLELCTKDRIGLLSDVTRIFRENSLT 358

Query: 365 VTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDS 424
           VTRAEV T++GKAVNTFYV  ASGYPVDAK IDSIRQ+ GQTILKVKG+PE+LK  SQ+S
Sbjct: 359 VTRAEVTTRAGKAVNTFYVSDASGYPVDAKTIDSIRQATGQTILKVKGSPEELKPVSQES 418

Query: 425 PTRFLFGGLFKSRSFVNFGLVRSCS 449
           PTRFLFGGLFKSRSFVNFGLV+S S
Sbjct: 419 PTRFLFGGLFKSRSFVNFGLVKSYS 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499936|ref|XP_003518791.1| PREDICTED: uncharacterized protein LOC100813551 isoform 2 [Glycine max]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/448 (81%), Positives = 393/448 (87%), Gaps = 18/448 (4%)

Query: 5   MSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 64
           MS+SH  DDEYEKL RRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQ+LTDLNLI
Sbjct: 1   MSFSHYMDDEYEKLFRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQILTDLNLI 60

Query: 65  VTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVK---Q 121
           +TKAYISSDG WFMDVFNVT +DGNK+TDE ILDYIRK              VGV    Q
Sbjct: 61  ITKAYISSDGGWFMDVFNVTGQDGNKVTDEAILDYIRK--------------VGVSPFGQ 106

Query: 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 181
           +MDHTAIEL G+DRPGLLSEVSAVLT+LKCN+++AEVWTHNTRAAA+M VTDEETG AIS
Sbjct: 107 TMDHTAIELMGTDRPGLLSEVSAVLTNLKCNILNAEVWTHNTRAAAVMHVTDEETGSAIS 166

Query: 182 DPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSL 241
           DP+RLS+IKELLCNVL G NK   AKT V+ + THTERRLHQMMFADRDYER   DDD  
Sbjct: 167 DPQRLSIIKELLCNVLGGGNKKRGAKTVVTDEATHTERRLHQMMFADRDYERVN-DDDDF 225

Query: 242 DEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQ 301
            EKQRPNVNVVN  DKDYSVVTI  KDRPKL+FDTVCTLTDMQYVVFHANIDAEGPEAYQ
Sbjct: 226 AEKQRPNVNVVNWSDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQ 285

Query: 302 EYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFREN 361
           EY+I+HIDGSPVKSDAER+RVIQCL AAIERRVSEGLKLELCTTDRVGLLS+VTRIFREN
Sbjct: 286 EYYIKHIDGSPVKSDAERQRVIQCLAAAIERRVSEGLKLELCTTDRVGLLSDVTRIFREN 345

Query: 362 SLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSAS 421
           SLTVTRAEVATK GKAVNTFYV GASG+PVD+K I+SIRQ+IG TILKVKG+PE++KS  
Sbjct: 346 SLTVTRAEVATKGGKAVNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEEMKSVP 405

Query: 422 QDSPTRFLFGGLFKSRSFVNFGLVRSCS 449
           QDSPTR LF GLFKSRSFVNFGLV+S S
Sbjct: 406 QDSPTRSLFSGLFKSRSFVNFGLVKSYS 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487953|ref|XP_003614264.1| ACR4 [Medicago truncatula] gi|355515599|gb|AES97222.1| ACR4 [Medicago truncatula]

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/451 (80%), Positives = 399/451 (88%), Gaps = 8/451 (1%)

Query: 2   ELSMSYS--HDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLT 59
           E++MSYS  H  DDEYEKL RRMNPPRVVIDN A +NATVIRVDSANK GILLEVVQ+LT
Sbjct: 6   EVNMSYSQSHYMDDEYEKLFRRMNPPRVVIDNGASQNATVIRVDSANKQGILLEVVQILT 65

Query: 60  DLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGV 119
           DLNLI+TKAYISSDG WFMDVFNVTD+DGNK+TDE ILDYIRK LGPE+CFA++MRSVGV
Sbjct: 66  DLNLIITKAYISSDGGWFMDVFNVTDQDGNKVTDEVILDYIRKSLGPESCFATTMRSVGV 125

Query: 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGA 179
           KQ+ DHTAIEL GSDRPGLLSEVSAVLT+LKCN+V+AEVWTHN RAAA+M VTDEETG A
Sbjct: 126 KQTPDHTAIELMGSDRPGLLSEVSAVLTNLKCNIVNAEVWTHNMRAAAVMHVTDEETGSA 185

Query: 180 ISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDD 239
           I+D +RLS+IKELLCNVL G N+   AKT V+ D THT+RRLHQMMF DRDYER   DDD
Sbjct: 186 ITDSQRLSLIKELLCNVLGGGNRKRGAKTVVTDDSTHTDRRLHQMMFDDRDYER--VDDD 243

Query: 240 SLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEA 299
             DEKQRPNV+VVN  DKDYSVVTI  +DRPKLVFDTVCTLTDMQYVVFHANIDAEGP+A
Sbjct: 244 DFDEKQRPNVDVVNWSDKDYSVVTIECRDRPKLVFDTVCTLTDMQYVVFHANIDAEGPQA 303

Query: 300 YQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFR 359
           YQEY+I+HIDGSPVKSDAER+RVI CL+AAIERRVSEGLKLELCTTDRVGLLSNVTRIFR
Sbjct: 304 YQEYYIKHIDGSPVKSDAERQRVIHCLEAAIERRVSEGLKLELCTTDRVGLLSNVTRIFR 363

Query: 360 ENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKS 419
           ENSLTVTRAEV TK GKAVNTFYV GASG  VD+K I+SIRQ+IG TILKVKG+PE L  
Sbjct: 364 ENSLTVTRAEVTTKGGKAVNTFYVRGASGCIVDSKTIESIRQTIGNTILKVKGSPESL-- 421

Query: 420 ASQDSPTR-FLFGGLFKSRSFVNFGLVRSCS 449
             QDSPTR  +F GLFKSRSFVNFGLV+S S
Sbjct: 422 -PQDSPTRSSIFSGLFKSRSFVNFGLVKSYS 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452827|ref|XP_004144160.1| PREDICTED: uncharacterized protein LOC101218703 [Cucumis sativus] gi|449524655|ref|XP_004169337.1| PREDICTED: uncharacterized protein LOC101228960 [Cucumis sativus]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/446 (80%), Positives = 398/446 (89%), Gaps = 5/446 (1%)

Query: 5   MSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 64
           M++SHD DDEY KLIRRMNPPRVVIDN+ACK+ATVIRVDSANKHGILLEVVQVLTDLNLI
Sbjct: 1   MNFSHDIDDEYVKLIRRMNPPRVVIDNDACKDATVIRVDSANKHGILLEVVQVLTDLNLI 60

Query: 65  VTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMD 124
           VTKAYIS DGCWFMDVFNVTD+DGNK+TDEG+LDYI++ L  ++CFASSMRSVGVK S+D
Sbjct: 61  VTKAYISCDGCWFMDVFNVTDQDGNKVTDEGVLDYIKRSLESDSCFASSMRSVGVKPSVD 120

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
           +T IEL G+DR GLLSEVSAVLTHLKCNVV AEVWTHNTRAAA+M VTD+ETG AI+D E
Sbjct: 121 YTVIELIGNDRQGLLSEVSAVLTHLKCNVVHAEVWTHNTRAAAVMHVTDDETGSAITDLE 180

Query: 185 RLSVIKELLCNVLKGSN-KSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDE 243
           RLS IK LL NVL+GSN +S  AKT VS  VTH ERRLHQMMFADRDYE    D+D +++
Sbjct: 181 RLSRIKGLLSNVLRGSNSRSKGAKTVVSHGVTHIERRLHQMMFADRDYEL--LDEDVMED 238

Query: 244 KQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEY 303
           +Q+PNV VVN  D DYSVVTI SKDRPKL+FDTVCTLTDMQYVVFHAN+ AEG EAYQEY
Sbjct: 239 QQKPNVKVVNWCDIDYSVVTIRSKDRPKLLFDTVCTLTDMQYVVFHANVVAEGTEAYQEY 298

Query: 304 FIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSL 363
           +IRHIDGSPVKSDAER+RVI CL+AAI RRVSEGLKLELCTTDRVGLLS+VTRIFRENSL
Sbjct: 299 YIRHIDGSPVKSDAERQRVIHCLEAAIRRRVSEGLKLELCTTDRVGLLSDVTRIFRENSL 358

Query: 364 TVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKG--NPEDLKSAS 421
           TVTRAEV TK+GKA+NTFYV   SGYPVD+K IDSIR+ IGQTILKVKG  +P++ K AS
Sbjct: 359 TVTRAEVTTKAGKAINTFYVRDPSGYPVDSKTIDSIRELIGQTILKVKGSSSPKEQKQAS 418

Query: 422 QDSPTRFLFGGLFKSRSFVNFGLVRS 447
           QDSPTRFLFGGLF+SRSFVNFGL+RS
Sbjct: 419 QDSPTRFLFGGLFRSRSFVNFGLIRS 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281803|dbj|BAJ33767.1| unnamed protein product [Thellungiella halophila]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/451 (78%), Positives = 395/451 (87%), Gaps = 6/451 (1%)

Query: 5   MSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 64
           MS+S D DDEYEKLIRRMNPPRVVIDN++CKNATVIRVDSAN++GILLEVVQ+LTDLNL 
Sbjct: 1   MSFSQDVDDEYEKLIRRMNPPRVVIDNDSCKNATVIRVDSANEYGILLEVVQILTDLNLT 60

Query: 65  VTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMD 124
           +TKAYISSDG WFMDVFNVTD+DGNK+TDE +LDYI+K LGPEACF+SSMR+VGV  S D
Sbjct: 61  ITKAYISSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSSSMRTVGVIPSTD 120

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
            T IELTG DRPGLLSE++AVLTHLKC+V++AEVWTHNTRAAA+MQVTD+ TG AISDPE
Sbjct: 121 STVIELTGCDRPGLLSELTAVLTHLKCSVLNAEVWTHNTRAAAVMQVTDDSTGCAISDPE 180

Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDS--LD 242
           RLS IK LL NVLKGSN    AKT VSQ   HT+RRLHQMMF DRDYE    DDDS   D
Sbjct: 181 RLSRIKNLLRNVLKGSNTPREAKTVVSQGEVHTDRRLHQMMFEDRDYEHRVVDDDSSIQD 240

Query: 243 EKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQE 302
           E+QRP+V V N  DKDYSVVT+  KDRPKL+FDTVCTLTDMQYVVFH ++D +G EAYQE
Sbjct: 241 ERQRPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTDGTEAYQE 300

Query: 303 YFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENS 362
           Y++RHIDGSPVKS+AE++RVIQCL+AAI+RRVSEGLKLELCTTDRVGLLSNVTRIFRENS
Sbjct: 301 YYVRHIDGSPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENS 360

Query: 363 LTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPED----LK 418
           LTVTRAEV TK GKA+NTFYV  ASGY +DAK +DSIRQ+IGQTILKVK NPE+     K
Sbjct: 361 LTVTRAEVKTKGGKALNTFYVSDASGYSIDAKTLDSIRQTIGQTILKVKNNPEEQQQRQK 420

Query: 419 SASQDSPTRFLFGGLFKSRSFVNFGLVRSCS 449
           S SQ+SPTRFLFGGLFKS+SFVNFGLVRS S
Sbjct: 421 SPSQESPTRFLFGGLFKSKSFVNFGLVRSYS 451

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572033|ref|NP_974107.1| ACT domain-containing protein [Arabidopsis thaliana] gi|332196758|gb|AEE34879.1| ACT domain-containing protein [Arabidopsis thaliana]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/455 (76%), Positives = 395/455 (86%), Gaps = 6/455 (1%)

Query: 1   MELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTD 60
           M++SMS+S D D+EYEKLIRRMNPPRVVIDN++CK ATVIRVDSAN++GILLEVVQ+LTD
Sbjct: 1   MDVSMSFSQDMDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTD 60

Query: 61  LNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVK 120
           LNL +TKAYISSDG WFMDVFNVTD+DGNK+TDE +LDYI+K LGPEACF++SMRSVGV 
Sbjct: 61  LNLTITKAYISSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVI 120

Query: 121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAI 180
            S D T IELTG DRPGLLSE+SAVLTHLKC+V++AE+WTHNTRAAA+MQVTD+ TG  I
Sbjct: 121 PSTDSTVIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGI 180

Query: 181 SDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDS 240
           SDPERLS IK LL NVLKGSN    AKT VS    HT+RRLHQMMF DRDYE    DDDS
Sbjct: 181 SDPERLSRIKNLLRNVLKGSNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDS 240

Query: 241 --LDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPE 298
              DE+QRP+V V N  DKDYSVVT+  KDRPKL+FDTVCTLTDMQYVVFH ++D EG E
Sbjct: 241 SIQDERQRPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTE 300

Query: 299 AYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIF 358
           A+QEY++RHIDGSPVKS+AE++RVIQCL+AAI+RRVSEGLKLELCTTDRVGLLSNVTRIF
Sbjct: 301 AFQEYYVRHIDGSPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIF 360

Query: 359 RENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPED-- 416
           RENSLTVTRAEV TK GKA+NTFYV  ASGY +DAK IDSIRQ+IGQTILKVK NP++  
Sbjct: 361 RENSLTVTRAEVKTKGGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQ 420

Query: 417 --LKSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS 449
              KS S +SPTRFLFGGLFKS+SFVNFGLVRS S
Sbjct: 421 QRQKSPSHESPTRFLFGGLFKSKSFVNFGLVRSYS 455

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	1.0	0.986	0.769	2.9e-183
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.991	0.975	0.696	5.7e-162
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.939	0.974	0.616	1.6e-132
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.884	0.876	0.569	2.1e-116
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.948	0.965	0.498	2e-104
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.472	0.424	0.473	1.2e-100
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.875	0.875	0.514	7.4e-98
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.643	0.605	0.417	9.6e-57
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.171	0.255	0.346	5.7e-09
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.763	0.836	0.208	8.4e-09

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1778 (630.9 bits), Expect = 2.9e-183, P = 2.9e-183
 Identities = 350/455 (76%), Positives = 395/455 (86%)

Query:     1 MELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTD 60
             M++SMS+S D D+EYEKLIRRMNPPRVVIDN++CK ATVIRVDSAN++GILLEVVQ+LTD
Sbjct:     1 MDVSMSFSQDMDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTD 60

Query:    61 LNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVK 120
             LNL +TKAYISSDG WFMDVFNVTD+DGNK+TDE +LDYI+K LGPEACF++SMRSVGV 
Sbjct:    61 LNLTITKAYISSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVI 120

Query:   121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAI 180
              S D T IELTG DRPGLLSE+SAVLTHLKC+V++AE+WTHNTRAAA+MQVTD+ TG  I
Sbjct:   121 PSTDSTVIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGI 180

Query:   181 SDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDS 240
             SDPERLS IK LL NVLKGSN    AKT VS    HT+RRLHQMMF DRDYE    DDDS
Sbjct:   181 SDPERLSRIKNLLRNVLKGSNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDS 240

Query:   241 L--DEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPE 298
                DE+QRP+V V N  DKDYSVVT+  KDRPKL+FDTVCTLTDMQYVVFH ++D EG E
Sbjct:   241 SIQDERQRPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTE 300

Query:   299 AYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIF 358
             A+QEY++RHIDGSPVKS+AE++RVIQCL+AAI+RRVSEGLKLELCTTDRVGLLSNVTRIF
Sbjct:   301 AFQEYYVRHIDGSPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIF 360

Query:   359 RENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDL- 417
             RENSLTVTRAEV TK GKA+NTFYV  ASGY +DAK IDSIRQ+IGQTILKVK NP++  
Sbjct:   361 RENSLTVTRAEVKTKGGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQ 420

Query:   418 ---KSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS 449
                KS S +SPTRFLFGGLFKS+SFVNFGLVRS S
Sbjct:   421 QRQKSPSHESPTRFLFGGLFKSKSFVNFGLVRSYS 455

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
 Identities = 319/458 (69%), Positives = 379/458 (82%)

Query:     1 MELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTD 60
             M++ +SYS++ DDE  K IRR+NPPRVVIDNE CK+ TVI+VDSANKHGILLEVVQVLT+
Sbjct:     1 MDVCLSYSYNMDDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTE 60

Query:    61 LNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE--ACFASSMRS-V 117
             LNL + KAYISSDG WFMDVFNVTD+DGNK+TDE +L+YIRK LGP+  +CF+ SMRS +
Sbjct:    61 LNLTIKKAYISSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTI 120

Query:   118 GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETG 177
             GVKQS+D+T +ELTG+DRPGLLSE+ AVL  L+CNVV+AE+WTH  +AAA++QVTDEET 
Sbjct:   121 GVKQSVDYTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETC 180

Query:   178 GAISDPERLSVIKELLCNVLKGSNKSGLA----KTEVSQDV--THTERRLHQMMFADRDY 231
              AI+DPERLS I++LL  VL G + SG      KT VS  +  THT+R+LHQ+MFADRDY
Sbjct:   181 SAITDPERLSKIRKLLGYVLTGGS-SGRRFREPKTTVSSALNETHTDRKLHQLMFADRDY 239

Query:   232 ERTGTDDDSLDEKQR--PNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH 289
             +    + D  D+  R  P+V+V N +D DYS+V I  KDRPKL+FDTV TLTDM YVV H
Sbjct:   240 DEWENNVDDEDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSH 299

Query:   290 ANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVG 349
             A+IDAEGP+AYQEY+IRH DGSPVKS+AER+RVI+CLKAAI+RRVSEGLKLELCT+DRVG
Sbjct:   300 ASIDAEGPQAYQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVG 359

Query:   350 LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILK 409
             LLS+VTRIFRENSLTVTRAEV TK  KA+NTFYV  ASGY VD K I+SIRQ IGQTIL+
Sbjct:   360 LLSDVTRIFRENSLTVTRAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTILQ 419

Query:   410 VKGNPEDLKSASQDSPTRFLFGGLFKSRSFVNFGLVRS 447
             VKG   D K + QDSPT FLFG +FKSRSFVNFGL+RS
Sbjct:   420 VKGGNTDAKPSPQDSPTGFLFG-VFKSRSFVNFGLIRS 456

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 268/435 (61%), Positives = 328/435 (75%)

Query:    12 DDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS 71
             DDEY KLIRRMNPPRVVIDN A  +ATVI+VDS NKHG LLEVVQVLTD+NL++ KAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    72 SDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEA-CFASSMRS-VGVKQSMDHTAIE 129
             SDG WFMDVF V D+DGNKI D  +LDYI+K +   A  F   +RS VGV  + ++T+IE
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIE 122

Query:   130 LTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVI 189
             L G+DRPGLLSEVSAVLT L CNVV+AE+WTHNTRAAA++ VTD  T  AI+DP RLS I
Sbjct:   123 LAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTI 182

Query:   190 KELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNV 249
             KELLCNV++ ++ S  AKT  S   TH ERRLHQ+MF DRDYE       S     RP+V
Sbjct:   183 KELLCNVVRTNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYEGVKRARTSAS---RPSV 239

Query:   250 NVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID 309
              ++N  +KDY+VVT+ SKDRPKLVFD VCTLTDMQYVVFH  +  E  EAYQE++IRH+D
Sbjct:   240 TLMNI-EKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHVD 298

Query:   310 GSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAE 369
             G P+ S+AE+ERVIQCL+AAIERR SEGL+LEL   DRVGLLS++TR FRENSLT+ RAE
Sbjct:   299 GLPINSEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRAE 358

Query:   370 VATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSA------SQD 423
             ++T+ GKA +TFYV   +G PV++KI++SIRQ IG + LKVK   ++  S       S +
Sbjct:   359 ISTREGKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVKKKEKEHCSVLGTSRPSHE 418

Query:   424 SPTR-FLFGGLFKSR 437
             + T  +L   +FK +
Sbjct:   419 TTTMGYLLSNIFKPK 433

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 230/404 (56%), Positives = 285/404 (70%)

Query:    12 DDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS 71
             D EYE L  R+NPP V IDN +CK  T+++VDS NK GILLEVVQVLTDL+L +TKAYIS
Sbjct:    10 DPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYIS 69

Query:    72 SDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRS-----VGVKQSMDHT 126
             SDG WFMDVF+VTD+ GNK+TD   +DYI K LGP+   ++S  +     VGV    DHT
Sbjct:    70 SDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHT 129

Query:   127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERL 186
             +IE+   DRPGLLSEVSAVL  L  NVV+AE WTHN R A ++ V D  T  A+ DPERL
Sbjct:   130 SIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERL 189

Query:   187 SVIKELLCNVLKGSNKSG--LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
             S ++E L NVL+G  +     A+T +S   TH +RRLHQM FADRDYE     DDS    
Sbjct:   190 SSMEEQLNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKLDDSASCG 249

Query:   245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
               P + V +C +K YSV+ ++ +DRPKL+FD VCTLTDMQY+VFHA I + G  A QEYF
Sbjct:   250 FEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEYF 309

Query:   305 IRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364
             IRH DG  + ++ E+ERV++CL+AAI RRVSEG  LELC  DRVGLLS VTRI RE+ L+
Sbjct:   310 IRHKDGCTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLLSEVTRILREHGLS 369

Query:   365 VTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL 408
             V+RA V T   +AVN FYV  ASG PVD K I+++R  IG +++
Sbjct:   370 VSRAGVTTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHSMM 413

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 222/445 (49%), Positives = 294/445 (66%)

Query:    13 DEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS 72
             DEYEKL+ RMN PRVVIDN  C +AT+++VDS+ ++GILLE VQ+LTDLNL + KAYISS
Sbjct:     8 DEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISS 67

Query:    73 DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTG 132
             DG W MDVF+VTD +GNK+ D+ +L YI + +     +  ++   G+      TA+ELTG
Sbjct:    68 DGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSI-ETVYYGENIEVNGL------TALELTG 120

Query:   133 SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKEL 192
             +DR GLLSE+ AVL+ L C+VV A++WTHN R A+++ + D  +G  I D  R+S I+  
Sbjct:   121 TDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGR 180

Query:   193 LCNVLKGSNK-SGLAKTEVSQD-VTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVN 250
             L NVL G N  +  AKT V+ D + H ERRLHQ+MF DRDYER     +         V 
Sbjct:   181 LKNVLNGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHE---RSPMVVVT 237

Query:   251 VVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDG 310
             V N  ++ YSVV +  +DR KL+FD VCTLTDM+Y VFHA I+    +A+ E++IRH DG
Sbjct:   238 VQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHKDG 297

Query:   311 SPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 370
             SP+ S+AER+RVIQCL+AA+ERR  EG++LEL   D+ GLL+ VTR FREN L VTR E+
Sbjct:   298 SPISSEAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVTRTEI 357

Query:   371 ATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPE------DLKSASQDS 424
             +T S  A N FYV  A+G   D K+I+S+R+ IG   L+VK  P       D +   Q  
Sbjct:   358 STSSDMATNIFYVTDANGDEPDFKLIESVREKIGLECLRVKEMPTMYHKKGDGEEQQQTK 417

Query:   425 PTRFLFGGLFKSRSFVNFGLVRSCS 449
                   G L   R+  NFGL++SCS
Sbjct:   418 AVLVSLGSLVW-RNLFNFGLIKSCS 441

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
 Identities = 106/224 (47%), Positives = 155/224 (69%)

Query:   215 THTERRLHQMMFADRDYERTGTDDDSL----------DEKQRPN--VNVVNCYDKDYSVV 262
             ++ ERRLHQ+M + RD++    +  SL          D K+R    V++ NC ++ YS+V
Sbjct:   240 SNMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSIV 299

Query:   263 TITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERV 322
             T+ SKDR +L+FDT+CTL DMQYV+FHA + ++G +A+QEYFIRHIDG  + ++ E+ERV
Sbjct:   300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query:   323 IQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFY 382
             I+CL+AAIERRV EG+KLELC  +RVGLLS++TR+ REN LTV RA+V T+  K++N FY
Sbjct:   360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query:   383 VGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPT 426
             V   SG  +D + ++S+++ +    L+VK     + +   D PT
Sbjct:   420 VRDISGNKIDMEFVESVKKEMRPIHLEVKNEDTKIDTVGSDEPT 463

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
 Identities = 213/414 (51%), Positives = 277/414 (66%)

Query:     1 MELSMSYSHDSDDEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTD 60
             MELS     D  +EYEKL+ RMN PRVVIDN  C N+TV+++DSA   GILLE VQ+LTD
Sbjct:     1 MELS-----DCSNEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTD 55

Query:    61 LNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVK 120
             +NL + KAYISSDG W MDVF+V+D +G+K+TDE ++ YI K +   + +  +    G+ 
Sbjct:    56 MNLWIKKAYISSDGKWNMDVFHVSDLNGDKLTDENLIRYIEKSI-ETSHYCKTEGYTGL- 113

Query:   121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAI 180
                  TA+ELTG+DR GLLSEV AVL  L+C+VV A+ WTHN R A+++ V D  +G  I
Sbjct:   114 -----TALELTGTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPI 168

Query:   181 S-DPERLSVIKELLCNVLKGSNK-SGLAKTEVSQDV-THTERRLHQMMFADRDYERTGTD 237
               D +R+  ++  L N+LK  +      +T VS    TH ERRLHQ MF DRDYE+    
Sbjct:   169 DGDSDRVQRVEGQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEK---- 224

Query:   238 DDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGP 297
                 D ++ P V+V N   + YSVV +  KDR KL+FD VCTLTDM Y+VFHA I   G 
Sbjct:   225 --KFDIEKSPIVSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGE 282

Query:   298 EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRI 357
              A+ E+++RH DG PV S+ ER+R+IQCL+AAIERR  +G++LELCT DR GLL+ VTRI
Sbjct:   283 TAFLEFYVRHSDGHPVSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRI 342

Query:   358 FRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVK 411
              REN L + RAE++TK   A N FYV  A+G  +D +II SIR+ IG   L VK
Sbjct:   343 LRENGLNIARAEISTKDSIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVK 396

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 129/309 (41%), Positives = 195/309 (63%)

Query:   122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 181
             S +HTA E+TG +RPGLLSE+SAVL+ + C+V +A  WTH+ RAA ++ + D   GG I 
Sbjct:   129 STEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFNGGPII 188

Query:   182 DPERLSVIKELLCNVLKGSNKSG-----LAKTEVSQDV----THTERRLHQMMFADRDYE 232
             DP R + +K+ L  V++  +  G     + +   ++ V     HTERRLH++M+ + DYE
Sbjct:   189 DPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYE 248

Query:   233 RT------GTDDDSL--DEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQ 284
                     G   D+L     +R +V +  C    YS+V +  +DRPKL+FDTVC L ++Q
Sbjct:   249 NCFDCDCFGDRCDALWRGRCERIHVTIEAC--NGYSMVNVKCRDRPKLLFDTVCALKELQ 306

Query:   285 YVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCT 344
             +VVFHA   A+G  A QEYFIR  +G  ++++ +RER+  CL AAI RR S+GLKLE+ T
Sbjct:   307 FVVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRRASQGLKLEIRT 366

Query:   345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIG 404
              +++GLLS+VTR+ REN L++TRAE+ T+   AV +FYV   +G       ++++ + +G
Sbjct:   367 ENKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGETGPSEVEAVVRELG 426

Query:   405 QTILK-VKG 412
               ++  VKG
Sbjct:   427 GAVVSAVKG 435

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query:    25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
             P V+ID +A   AT++++   N+ G L++ ++ L DL L V K  +S++G      F++T
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    85 DED-GNKITDEGILDYIR 101
               D G K+ D  +L+ IR
Sbjct:   155 KRDTGRKVEDPDLLEQIR 172

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 76/365 (20%), Positives = 157/365 (43%)

Query:    27 VVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDE 86
             ++  +E   + +VI ++  +K G+  ++ ++L    L + +  +S+DG W   VF V  +
Sbjct:    10 IISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWCYLVFWVIGK 69

Query:    87 DGNK--ITDEGILDYIRK---CLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSE 141
                +  +    +++         G   C+ S   S   K   D   ++L  SDR GLL +
Sbjct:    70 PNTRWNLLKMRLVEASPSFSWAFGISRCYLSDSESQPPKLP-DLFLLKLACSDRTGLLYD 128

Query:   142 VSAVLTHLKCNVVSAEV-WTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 200
             V+ VL  L+ N+   ++  T + +   L  VTD  T   +   +R + + E L + + G 
Sbjct:   129 VTEVLYKLEINIEKVKISTTPDGKVMDLFFVTD--TRELLGTVKRRNEVYEYLRDAI-GD 185

Query:   201 NKSGLAKTEVSQDVT--HTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKD 258
             +        V  ++T   T   + + +F+    + +G     L      ++ V N     
Sbjct:   186 SMISYDIELVGPEITACSTSSSVAETLFSS---DVSGEHSSGLHTSSNVSIAVDNSLSSA 242

Query:   259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDA 317
             ++++ IT +D   L++D + T  D    + +     + G     + FI   DG  +   +
Sbjct:   243 HTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDLFIVQSDGRKILDSS 302

Query:   318 ERERVIQCLKAAIER--RV---SEGLKLELCTTDRVGLLSNVT-RIFRENSLTVTRAEVA 371
             +   +I  L+A +++  RV   + G   EL  T+ V L      ++F + +L + + +  
Sbjct:   303 KLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRPQVFHDIALALKKIDTC 362

Query:   372 TKSGK 376
               S +
Sbjct:   363 IFSAE 367

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X0513 hypothetical protein (443 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	449
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	9e-39
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	8e-34
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	3e-33
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-30
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-19
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	5e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	7e-13
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	7e-13
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-12
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	7e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-08
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-07
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	3e-07
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	3e-06
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	4e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-06
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	4e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	6e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-05
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	1e-05
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	3e-05
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	4e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	4e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	7e-05
pfam01842	66	pfam01842, ACT, ACT domain	7e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	1e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	3e-04
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	4e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-04
pfam01842	66	pfam01842, ACT, ACT domain	6e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	0.001
pfam13740	76	pfam13740, ACT_6, ACT domain	0.002
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	0.003
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	0.003
cd04893	77	cd04893, ACT_GcvR_1, ACT domains that comprise the	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  134 bits (339), Expect = 9e-39
 Identities = 50/75 (66%), Positives = 63/75 (84%)

Query: 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAE 318
           YSVVT+  +DRPKL+FD VCTLTDM YVVFHA ID +G +A+QEY+IRH DG  + ++ E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 319 RERVIQCLKAAIERR 333
           R+RVI+CL+AAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  121 bits (304), Expect = 8e-34
 Identities = 47/72 (65%), Positives = 58/72 (80%)

Query: 37  ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGI 96
            T+++VDSA K GILLE VQVLTDL+L +TKAYISSDG WFMDVF+VTD+ GNK+TD+ +
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 97  LDYIRKCLGPEA 108
           + YI K LG   
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  119 bits (301), Expect = 3e-33
 Identities = 48/74 (64%), Positives = 55/74 (74%)

Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
           TAIELTG+DRPGLLSEV AVL  L CNVV A  WTHN R A ++ V DEETG  I DP R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 186 LSVIKELLCNVLKG 199
           L+ I++ L NVL+G
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  112 bits (283), Expect = 1e-30
 Identities = 45/72 (62%), Positives = 56/72 (77%)

Query: 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKII 396
           G++LEL T DRVGLLS+VTR+FREN LTVTRAE++T+   AVN FYV  A+G PVD K I
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 397 DSIRQSIGQTIL 408
           +++RQ IG   L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 81.7 bits (203), Expect = 2e-19
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
           LEL   DR GLL++VTR+  E  L +  A++AT   +A + FYV  A G P+D +  +++
Sbjct: 3   LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEAL 62

Query: 400 RQSIGQTI 407
           R ++G+ +
Sbjct: 63  RAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 80.6 bits (200), Expect = 5e-19
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
           T +ELT  DRPGLL++V+ VL  L  N+ SA++ T   RA  +  VTD +      DPER
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP--LDPER 58

Query: 186 LSVIKELLCNVL 197
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 71.4 bits (176), Expect = 9e-16
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
           T +E+   DRPGLL++++ VL  L  N+  A + T   RA  +  VTD +  G   DPER
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD--GRPLDPER 58

Query: 186 LSVIKELLCNVL 197
           ++ ++E L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 19/68 (27%), Positives = 40/68 (58%)

Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
           +E+   DR GLL+++TR+  +  L +  A ++T   +A++ FYV  + G P+D + I  +
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARL 62

Query: 400 RQSIGQTI 407
            +++   +
Sbjct: 63  EEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 38  TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGIL 97
           TV+ V + ++ G+L ++ +VL DL L +  A IS+ G   +DVF VTD DG  + D   +
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 98  DYIRKCL 104
             + + L
Sbjct: 60  ARLEEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 70.7 bits (174), Expect = 7e-13
 Identities = 37/81 (45%), Positives = 52/81 (64%)

Query: 24  PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
           PPRV IDNEA    TVI V+  ++ G+L ++ + L+DLNL +  A+I++ G   +DVF V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 84  TDEDGNKITDEGILDYIRKCL 104
           TD  G KIT+E     IR+ L
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 59.9 bits (146), Expect = 9e-12
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAER 319
           +VV + + DRP L+ D    L D+   +  A I   G  A   +++   DG P+      
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 320 ERVIQCLKAAI 330
            R+ + L+ A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 26/185 (14%)

Query: 25  PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI--SSDGCWFMDVFN 82
           P  +ID       T + + + ++ G+  +V   L  L+L V  A +  + DG   +D F 
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDG-VALDTFV 714

Query: 83  VTDEDGNKITDE----GILDYIRKCLG-----PEACFASSMRSVGVKQ------------ 121
           V D  G+    E     +L  +   L      P+   A   R   ++             
Sbjct: 715 VQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNT 774

Query: 122 -SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAI 180
            S   T +E+   DRPGLL+ V   L  L  ++ SA++ T   +A  +  VTD   G  +
Sbjct: 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF-GLKL 833

Query: 181 SDPER 185
           +D E 
Sbjct: 834 TDEEE 838

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 181
           S   T IE+ G DRPGLL +++  L+ L  N+ SA + T+  RA  +  VTD   G  I+
Sbjct: 840 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKIT 898

Query: 182 DPERLSVIKELLCNVLKG 199
           +  R + I+  L   L  
Sbjct: 899 NEARQAAIRRALLAALAE 916

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 24  PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
           PPRV I N A + AT++ V + ++ G+L  V + L +L L +  A I++ G    DVF V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 84  TDEDGNKITDE 94
           TD  G K+TDE
Sbjct: 826 TDLFGLKLTDE 836

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 26/217 (11%)

Query: 117 VGVKQSMDHTAIELT--GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 174
             +  +      E+     D+PGL ++V+  L  L  +V  A+V T     A    V  +
Sbjct: 658 ALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD 717

Query: 175 ETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERT 234
             G   +       + + L +VL  +  +    T  +       RRL             
Sbjct: 718 LFGSPPAAERVFQELLQGLVDVL--AGLAKDPDTISA--RRARRRRLQHFAVP------- 766

Query: 235 GTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA 294
                       P V ++N   +  +++ + + DRP L+     TL ++   +  A I  
Sbjct: 767 ------------PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITT 814

Query: 295 EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331
            G +A   +++  + G  + +D E +R+++ L A++ 
Sbjct: 815 FGEKAEDVFYVTDLFGLKL-TDEEEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 25  PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI--SSDGCWFMDVFN 82
           P V+I        T + V + ++  +   V   L+   L +  A I  + DG + +D F 
Sbjct: 672 PLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG-YALDTFI 730

Query: 83  VTDEDGNKITDEGIL--------DYIRKCLGPEACFASSMRSVGVK----------QSMD 124
           V + DG  + ++             +     P        +                S D
Sbjct: 731 VLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASND 790

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
            T +E+   DRPGLL+ ++ V   L  ++ SA++ T   R   +  VTD + G A++   
Sbjct: 791 KTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD-GQALNAEL 849

Query: 185 RLSVIKELL 193
           R S+++ LL
Sbjct: 850 RQSLLQRLL 858

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 37/222 (16%)

Query: 124 DHTAIELT--GSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAI 180
                E+T   +D PGL S ++        N+V A ++T  + RA     + D   G   
Sbjct: 729 ARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF-GRDE 787

Query: 181 SDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDS 240
            +P RL+ + + + + L G                  E RL + + A R   +       
Sbjct: 788 DEPRRLARLAKAIEDALSG------------------EVRLPEAL-AKRTKPKK------ 822

Query: 241 LDEKQR-----PNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE 295
              + R     P V + N     ++V+ +  +DRP L++D    L+D+   +  A+I   
Sbjct: 823 ---RARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY 879

Query: 296 GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEG 337
           G  A   +++  + G  + ++A +  + + L AA+    +E 
Sbjct: 880 GERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA 921

Length = 931

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 25/193 (12%)

Query: 37  ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI-SSDGCWFMDVFNVTDEDGNKI-TDE 94
            T I + + ++H      V  +  LNL +  A I +S   + +D + V D+DG  I  + 
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 95  GILDYIRKCLGPE-------------------ACFASSMRSVGVKQSM--DHTAIELTGS 133
             ++ IR+ L                        FA   + V +        T +E+   
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQ-VTISNDAQRPVTVLEIIAP 822

Query: 134 DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELL 193
           DRPGLL+ +  +      ++ +A++ T   R   +  +TD +    +SDP+  S +++ +
Sbjct: 823 DRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD-NQPLSDPQLCSRLQDAI 881

Query: 194 CNVLKGSNKSGLA 206
           C  L   N+   +
Sbjct: 882 CEQLDARNEKDTS 894

Length = 895

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 33/179 (18%)

Query: 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA-EGPEAYQEYFIRHIDGSPVKSDAERE 320
           V I + D+P L       L  +   V  A ++  +   A   + ++ + GSP  ++   +
Sbjct: 671 VFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQ 730

Query: 321 RVIQCLKAAIE------------RRVSEGLK--------------------LELCTTDRV 348
            ++Q L   +             R     L+                    +E+   DR 
Sbjct: 731 ELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRP 790

Query: 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 407
           GLL+ V R   E  L++  A++ T   KA + FYV    G  +  +    + + +  ++
Sbjct: 791 GLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 27/71 (38%), Positives = 38/71 (53%)

Query: 24  PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
           PPRV I   A  + TV+ V + ++ G+L  +  V  DL L +  A I++ G    DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 84  TDEDGNKITDE 94
           TD DG  +  E
Sbjct: 838 TDADGQALNAE 848

Length = 867

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 13  DEYEKLIRRMNP---------PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNL 63
           D+Y  +I+R  P          +V I N+A +  TV+ + + ++ G+L  + ++  + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840

Query: 64  IVTKAYISSDGCWFMDVFNVTDEDGNKITD 93
            +  A I++ G    DVF +TD D   ++D
Sbjct: 841 SLQNAKIATLGERVEDVFFITDADNQPLSD 870

Length = 895

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDE 94
          TV+ + + ++ G+L +V +VL +L L +  A I++ G    DVF VTD DG  +  E
Sbjct: 1  TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPE 57

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 29/181 (16%)

Query: 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANID-AEGPEAYQEYFIRHIDGSPVKSDAERE 320
           V + + DRP+L       L+     +  A I       A   + +   DG PV+ D    
Sbjct: 687 VFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAA 746

Query: 321 RV---IQCLK-----AAIERRVSEGLK--------------------LELCTTDRVGLLS 352
                I+ L          RR+   L+                    LE+   DR GLL+
Sbjct: 747 LRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLA 806

Query: 353 NVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKG 412
            +  +F +  L++  A++ T   +  + F V  A G  ++A++  S+ Q + + +L    
Sbjct: 807 ALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPNDE 866

Query: 413 N 413
            
Sbjct: 867 G 867

Length = 867

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDP 183
           + T +EL   DR GLL++VS V + L  N+++A++ T   +A     +T+++ G A+ + 
Sbjct: 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ-GQALDEE 840

Query: 184 ERLSVIKELLCNV 196
           ER ++   LL N+
Sbjct: 841 ERKALKSRLLSNL 853

Length = 854

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 134 DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRA-AAL--MQVTDEETGGAISDPERLSVIK 190
           DRPGL + ++  L  L  N++ A +    TR   AL    V D + G  I + ERL+ I+
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARI--FTTRDGYALDTFVVLDPD-GEPIGERERLARIR 66

Query: 191 ELLCNVL 197
           E L + L
Sbjct: 67  EALEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 34/190 (17%)

Query: 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKSDA 317
            + + I + D+      TV  +  +   +  A I  +        Y +   DG P+  + 
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 318 ER-----ERVIQCLK------AAIERRVSEGLK--------------------LELCTTD 346
            R     E + + L+        I+RRV   LK                    LE+   D
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPD 823

Query: 347 RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQ 405
           R GLL+ + RIF E  L++  A++AT   +  + F++  A   P+ D ++   ++ +I +
Sbjct: 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICE 883

Query: 406 TILKVKGNPE 415
             L  +   +
Sbjct: 884 Q-LDARNEKD 892

Length = 895

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 30/166 (18%)

Query: 256 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKS 315
           D     VT+ + DR  L+      L   +  V  A++ +    A  E+ +    GSP  +
Sbjct: 596 DPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDA 655

Query: 316 DAERERVIQCLK------AAIERRVSEGLK------------------------LELCTT 345
              R+ + + L       A +  R +                            LE+   
Sbjct: 656 ALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAA 715

Query: 346 DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV 391
           DR GLL+ + R      + V  A VAT     V+ FYV GA+G P+
Sbjct: 716 DRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 29/202 (14%)

Query: 25  PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI--SSDGCWFMDVFN 82
           P V++  +A +  T I + S ++  +   V   L   NL V  A I  S DG   MD F 
Sbjct: 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG-MAMDTFI 747

Query: 83  VTDEDGNKITDEGILDYIRKCLGPEACFASS-------------MRSVGVKQSMD----- 124
           V + DG+ ++ +     IRK L  E     S             +R   V   +      
Sbjct: 748 VLEPDGSPLSQDRH-QVIRKAL--EQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTH 804

Query: 125 ---HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 181
               + +EL   D+PGLL+ V  +   L  ++  A + T   R   L  +   +   A++
Sbjct: 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD-RRALN 863

Query: 182 DPERLSVIKELLCNVLKGSNKS 203
           +  +  + ++ L   L  ++K 
Sbjct: 864 EELQQEL-RQRLTEALNPNDKG 884

Length = 884

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
           +E+   DR GLL ++TR   + +L +  A +AT   +AV+ FYV    G     KI +  
Sbjct: 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFG----LKITNEA 901

Query: 400 RQ-SIGQTILKVKGNPEDLKSASQDSPTR 427
           RQ +I + +L      E    A++     
Sbjct: 902 RQAAIRRALLAALAEGEAEARAARPPGAV 930

Length = 931

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172
           + ++G DRPGLL++V +VL     N+ S E  T      A + + 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 45  ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCL 104
            ++ G+L +V +V  +  L VT+A IS+ G   ++VF VTD +GN + D   ++ +R+ +
Sbjct: 9   EDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEI 67

Query: 105 GPE 107
           GP 
Sbjct: 68  GPA 70

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
           T +E+   DRPGLL+EV   L     N+ S    T   +A     V              
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKA---GIVFIVVVVDEEDLEAA 57

Query: 186 LSVIKELL 193
           L  +K+LL
Sbjct: 58  LEALKKLL 65

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 299 AYQEYFIRHIDGSPV---KSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVT 355
           AY +YF+R          +S          L      R S G ++ +   D+ GL + V 
Sbjct: 627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVA 686

Query: 356 RIFRENSLTVTRAEV-ATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNP 414
                 SL+V  A+V  TK G A++TF V    G P  A   + + Q + Q ++ V    
Sbjct: 687 GALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAA---ERVFQELLQGLVDVLAGL 743

Query: 415 EDL 417
              
Sbjct: 744 AKD 746

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRA-AALMQVTDEETGGAISDPERL 186
           I +   DRPGLL++++ V+   K N++S  V T       A +++T E     + D E L
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILS--VNTRTDDDGLATIRLTLE-----VRDLEHL 53

Query: 187 SVI 189
           + I
Sbjct: 54  ARI 56

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 329 AIERRVSEGLKLEL--CTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA 386
            +E   ++   +E+     DR GLLS    +   + L V  A V +  G AV  F V   
Sbjct: 589 HVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR 648

Query: 387 SGYPVDAKII 396
            G P DA ++
Sbjct: 649 FGSPPDAALL 658

Length = 774

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 24  PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
           PPRV+  + A  +ATV+ V +A++ G+L  + + L    + V  A +++ G   +DVF V
Sbjct: 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYV 753

Query: 84  TDEDGNKITDE 94
           T   G  + D 
Sbjct: 754 TGAAGGPLADA 764

Length = 774

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 28/171 (16%)

Query: 241 LDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEA 299
           LD +    V + N + +  + + I  +D+  L    V T+   +  +  A I  ++    
Sbjct: 659 LDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYV 718

Query: 300 YQEYFIRHIDGSPVKSDAERE---RVIQCLKAAIE--RRVSEGLKL-------------- 340
              + +  ++G  ++ D  R+    + + L         + E  KL              
Sbjct: 719 LDSFIVTELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNE 778

Query: 341 --------ELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383
                   EL   DR GLL+ V+++F E +L +  A++ T   KA + F +
Sbjct: 779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFIL 829

Length = 854

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 37  ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI--SSDGCWFMDVFNVTDEDGNKITDE 94
            T + + + ++ G+   +   L  L L +  A I  + DG + +D F V D DG  I + 
Sbjct: 1   GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDG-YALDTFVVLDPDGEPIGER 59

Query: 95  GILDYIRKCL 104
             L  IR+ L
Sbjct: 60  ERLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGC--WFMDVFNVTDEDG 88
          TV+ V   ++ G+L EV   L D  + +     S+ G     + +  V DE+ 
Sbjct: 1  TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEED 53

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 343 CTTDRVGLLSNVTRIFRENSLTVTRAEV-ATKSGKAVNTFYVGGASGYPVDA-KIIDSIR 400
            T DR GL + +     +  L +  A +  T+ G A++TF V    G P+   + +  IR
Sbjct: 7   YTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIR 66

Query: 401 QSIGQTI 407
           +++   +
Sbjct: 67  EALEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172
           I  TG DRPGL + ++ VL    CN++ +            M V+
Sbjct: 5   ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVS 49

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERL 186
            +EL   DR GLLS+V+ V       V  AE+ T    A  +  VTD   G  + DP+ +
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTI 60

Query: 187 SVIKE 191
             +++
Sbjct: 61  EAVRQ 65

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 174
           T I L   DRPGLL++V+ VL      V  A + T   RA    Q+TDE
Sbjct: 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE 845

Length = 869

>gnl|CDD|153165 cd04893, ACT_GcvR_1, ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172
           H  I   G+DRPG+L+E++  ++   CN++ + +    T  A  M V 
Sbjct: 1   HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE 48

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR interacts directly with GcvA rather than binding to DNA to cause repression. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	449
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK03059	856	PII uridylyl-transferase; Provisional	99.92
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.82
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.74
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.73
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.72
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.71
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.67
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.67
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.6
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.55
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.54
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.54
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.51
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.51
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.49
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.44
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.34
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.3
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.27
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.27
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.19
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.18
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.17
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.16
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.86
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.78
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.76
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.75
COG4747	142	ACT domain-containing protein [General function pr	98.62
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.53
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.49
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.4
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.32
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.3
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.3
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.24
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.23
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.99
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.98
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.98
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.89
PRK00194	90	hypothetical protein; Validated	97.85
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.85
PRK07431	587	aspartate kinase; Provisional	97.79
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.76
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.75
PRK00194	90	hypothetical protein; Validated	97.74
COG4747	142	ACT domain-containing protein [General function pr	97.63
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.56
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.56
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.54
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.52
COG3830	90	ACT domain-containing protein [Signal transduction	97.49
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.47
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.43
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.37
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.33
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.3
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.3
COG3830	90	ACT domain-containing protein [Signal transduction	97.29
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.26
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.25
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.21
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.18
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.11
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.06
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.04
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.94
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.87
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.83
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.83
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.81
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.76
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.76
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.75
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.71
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.64
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.64
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.62
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.58
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.52
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.52
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.52
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.47
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.41
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.38
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.38
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.37
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.37
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.32
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.27
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.25
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.22
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.14
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.13
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.11
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.11
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.11
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.09
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.06
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.03
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.02
PRK07431	587	aspartate kinase; Provisional	96.0
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.0
PRK08577	136	hypothetical protein; Provisional	95.97
PRK08577	136	hypothetical protein; Provisional	95.95
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	95.93
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.9
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.89
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.78
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.73
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.71
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.62
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.6
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.59
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.59
PRK04435	147	hypothetical protein; Provisional	95.57
PRK11899	279	prephenate dehydratase; Provisional	95.53
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.52
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.52
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.42
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.39
cd02116	60	ACT ACT domains are commonly involved in specifica	95.27
cd02116	60	ACT ACT domains are commonly involved in specifica	95.21
PRK07334	403	threonine dehydratase; Provisional	95.09
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	94.97
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.86
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	94.55
PRK04435	147	hypothetical protein; Provisional	94.55
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	94.44
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.0
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.87
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	93.86
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.76
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.75
PRK06635	404	aspartate kinase; Reviewed	93.7
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.37
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.35
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	93.2
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.16
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.11
PRK06291	465	aspartate kinase; Provisional	93.04
PRK07334	403	threonine dehydratase; Provisional	92.97
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.96
PRK08210	403	aspartate kinase I; Reviewed	92.76
COG1707	218	ACT domain-containing protein [General function pr	92.59
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.56
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	92.55
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.38
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.36
PRK06635	404	aspartate kinase; Reviewed	92.35
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	92.15
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	92.12
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	91.79
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.17
COG1707	218	ACT domain-containing protein [General function pr	90.84
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	90.66
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.59
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	90.08
PRK09034	454	aspartate kinase; Reviewed	89.95
PRK08818	370	prephenate dehydrogenase; Provisional	89.63
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	89.49
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	89.41
PRK06382	406	threonine dehydratase; Provisional	89.31
PLN02551	521	aspartokinase	89.04
PRK06291	465	aspartate kinase; Provisional	88.96
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	88.77
PRK09181	475	aspartate kinase; Validated	88.74
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.72
PRK08210	403	aspartate kinase I; Reviewed	88.65
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	88.59
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.52
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	88.14
PRK06545	359	prephenate dehydrogenase; Validated	88.01
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	87.94
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	87.76
PRK06382	406	threonine dehydratase; Provisional	87.32
PLN02317	382	arogenate dehydratase	87.09
PRK14630	143	hypothetical protein; Provisional	87.07
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	86.81
PRK06349	426	homoserine dehydrogenase; Provisional	86.08
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	86.07
PRK09034	454	aspartate kinase; Reviewed	85.85
PRK06545	359	prephenate dehydrogenase; Validated	85.55
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	85.12
PRK14646	155	hypothetical protein; Provisional	84.74
PRK14634	155	hypothetical protein; Provisional	84.72
PLN02551	521	aspartokinase	84.61
PRK09181	475	aspartate kinase; Validated	84.11
PRK11899	279	prephenate dehydratase; Provisional	84.06
PRK14636	176	hypothetical protein; Provisional	83.6
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	83.34
PRK08198	404	threonine dehydratase; Provisional	83.26
PRK12483	521	threonine dehydratase; Reviewed	83.05
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	83.03
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	82.85
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	82.62
PRK09084	448	aspartate kinase III; Validated	82.6
PRK08818	370	prephenate dehydrogenase; Provisional	82.07
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	81.58
PRK11898	283	prephenate dehydratase; Provisional	81.48
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	81.33
PRK14645	154	hypothetical protein; Provisional	81.3
PRK06349	426	homoserine dehydrogenase; Provisional	80.97
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	80.62
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.48

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=6.5e-27  Score=261.00  Aligned_cols=174  Identities=24%  Similarity=0.335  Sum_probs=147.5

Q ss_pred             hcCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHH
Q 013090           21 RMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDY   99 (449)
Q Consensus        21 ~~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~   99 (449)
                      ...+|.|.+++++..++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.+++ ++.++.
T Consensus       661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~  739 (854)
T PRK01759        661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ  739 (854)
T ss_pred             cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence            3457899999999999999999999999999999999999999999999987 89999999999999999885 444444


Q ss_pred             HHH----Hhccccccc----CC--------cceee--ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090          100 IRK----CLGPEACFA----SS--------MRSVG--VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH  161 (449)
Q Consensus       100 I~~----~L~~~~~~~----~~--------~~~V~--~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~  161 (449)
                      |++    +|.+.....    .+        +.+|.  ++.+..+|+|+|.++||||||++|+++|.++|++|+.|+|+|.
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~  819 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI  819 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence            554    444332110    01        12344  4677899999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          162 NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       162 ~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      |++|+|+|||++ .+|.++.++++ +.|+++|..+|
T Consensus       820 gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        820 GEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             CceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999 48899987666 99999987765

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=9.8e-27  Score=260.43  Aligned_cols=174  Identities=22%  Similarity=0.284  Sum_probs=148.6

Q ss_pred             CCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHH----H
Q 013090           23 NPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGI----L   97 (449)
Q Consensus        23 ~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~----~   97 (449)
                      .+|.|.+++.++.++|+|+|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|++++|.++++ +.    .
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~-~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQ-DRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCH-HHHHHHH
Confidence            57899999999999999999999999999999999999999999999986 678999999999999998753 34    4


Q ss_pred             HHHHHHhcccccc-----cCC--------cceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC
Q 013090           98 DYIRKCLGPEACF-----ASS--------MRSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN  162 (449)
Q Consensus        98 ~~I~~~L~~~~~~-----~~~--------~~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~  162 (449)
                      +.|+++|.+....     ..+        +.+|.+  +.+..+|+|+|.++||||||++|+++|.++|++|++|+|+|.|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            4555555443211     001        123444  6788999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090          163 TRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  199 (449)
Q Consensus       163 ~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  199 (449)
                      ++|+|+|||++ .+|.+++ +++.+.|+++|..+|..
T Consensus       846 era~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        846 ERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             ceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            99999999999 4788887 68889999999988865

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.2e-26  Score=256.82  Aligned_cols=183  Identities=15%  Similarity=0.206  Sum_probs=157.6

Q ss_pred             eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090          118 GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  196 (449)
Q Consensus       118 ~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (449)
                      .++++.++|.|+|.++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||+++ +|.++. ++++++|++.|.++
T Consensus       670 ~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l~~~L~~a  747 (854)
T PRK01759        670 SNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQLEQALTKA  747 (854)
T ss_pred             EecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHHHHHHHHH
Confidence            3466778999999999999999999999999999999999988 89999999999995 788885 67899999999999


Q ss_pred             ccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHH
Q 013090          197 LKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDT  276 (449)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i  276 (449)
                      |.++....   ...        ++..       .         ...+..+|.|.|+|+.+..+|+|+|.++|||||||+|
T Consensus       748 L~~~~~~~---~~~--------~~~~-------~---------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I  800 (854)
T PRK01759        748 LNTNKLKK---LNL--------EENH-------K---------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQV  800 (854)
T ss_pred             HcCCCCcc---hhc--------cccc-------c---------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHH
Confidence            98754321   000        0000       0         0134577999999999999999999999999999999


Q ss_pred             HHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090          277 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  330 (449)
Q Consensus       277 ~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l  330 (449)
                      +++|.++|++|+.|+|+|.|++|.|+|||++.+|.+++++.+ ++|+++|.++|
T Consensus       801 ~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        801 SQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999999999999999999999999999987544 89999998876

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=6.3e-26  Score=253.94  Aligned_cols=184  Identities=21%  Similarity=0.250  Sum_probs=157.9

Q ss_pred             ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       119 ~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      +.++.+++.|+|.++||||||++|+++|+.+|+||++|+|+|. +|++.|+|+|+++ +|.++. ++++++|++.|.++|
T Consensus       695 ~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~-~~~~~~I~~~L~~aL  772 (884)
T PRK05007        695 KQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLS-QDRHQVIRKALEQAL  772 (884)
T ss_pred             ecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCC-HHHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999999999985 5699999999994 788874 678999999999999


Q ss_pred             cCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHH
Q 013090          198 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTV  277 (449)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~  277 (449)
                      .+.....   . .       .+|..      +.         ...+..+|.|.|+|+.++.+|+|+|.++||||||++|+
T Consensus       773 ~~~~~~~---~-~-------~~~~~------~~---------~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~  826 (884)
T PRK05007        773 TQSSPQP---P-K-------PRRLP------AK---------LRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVG  826 (884)
T ss_pred             cCCCCCc---c-c-------ccccc------cc---------cCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHH
Confidence            8754321   1 1       11110      00         01345789999999999999999999999999999999


Q ss_pred             HHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090          278 CTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       278 ~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      ++|.++|++|+.|+|+|.|++|.|+|||++.+|.+++ +++.+.|+++|.+++.
T Consensus       827 ~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        827 KIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN  879 (884)
T ss_pred             HHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997 5678999999998885

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.7e-25  Score=250.56  Aligned_cols=177  Identities=23%  Similarity=0.395  Sum_probs=147.5

Q ss_pred             CCCEEEEecCCC---CCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCC-ChHHH
Q 013090           23 NPPRVVIDNEAC---KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKIT-DEGIL   97 (449)
Q Consensus        23 ~~p~V~i~~~~~---~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~-~~~~~   97 (449)
                      ..|.|.+.+...   .++++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. +++.+
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            457888877765   58999999999999999999999999999999999975 79999999999999999854 34455


Q ss_pred             HHHHHHh----cccccc------cCC--------cceee--ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEE
Q 013090           98 DYIRKCL----GPEACF------ASS--------MRSVG--VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus        98 ~~I~~~L----~~~~~~------~~~--------~~~V~--~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                      +.|++.|    .+....      ..+        ...|.  ++.+.++|+|+|.++||||||++|+++|+.+|+||++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            5555544    433210      001        11233  366778999999999999999999999999999999999


Q ss_pred             EEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 013090          158 VWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  200 (449)
Q Consensus       158 i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  200 (449)
                      |+|.|++++|+|||+++ +|.++.+++++++|+++|.++|...
T Consensus       847 I~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        847 IATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999994 8889988889999999999998664

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=5.9e-25  Score=246.17  Aligned_cols=183  Identities=21%  Similarity=0.308  Sum_probs=157.1

Q ss_pred             CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCC-CHHHHHHHHHHhcccccCc
Q 013090          123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAIS-DPERLSVIKELLCNVLKGS  200 (449)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~-~~~~~~~l~~~L~~~L~~~  200 (449)
                      .+.+.|.|.++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|+++ +|.++. +++++++|++.|.++|.++
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999977 67899999999995 777754 4589999999999999886


Q ss_pred             cccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHH
Q 013090          201 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTL  280 (449)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L  280 (449)
                      .+..   ..+       .+|..      +..         ..+..+|.|.++|..+.++|+|+|+++||||||++|+++|
T Consensus       781 ~~~~---~~~-------~~~~~------~~~---------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L  835 (895)
T PRK00275        781 DDYP---TII-------QRRVP------RQL---------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF  835 (895)
T ss_pred             Cccc---hhh-------hhhhh------hhc---------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence            5421   212       12210      000         1335679999999999999999999999999999999999


Q ss_pred             HhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090          281 TDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       281 ~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      .++|+||++|+|+|.|++++|+|||++.+|.++.++.++++|++.|.++|.
T Consensus       836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~  886 (895)
T PRK00275        836 LEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD  886 (895)
T ss_pred             HHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999877788999999999985

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=5.2e-24  Score=238.93  Aligned_cols=186  Identities=23%  Similarity=0.332  Sum_probs=158.0

Q ss_pred             cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE-ccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW-THNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~-T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      ....+.|.|+|.++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|||+++ +|.++.+++++++|++.|.++|.
T Consensus       663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~~~L~~~L~  741 (850)
T TIGR01693       663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELLQGLVDVLA  741 (850)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHHHHHHHHHc
Confidence            3447899999999999999999999999999999999999 589999999999994 78888877889999999999998


Q ss_pred             CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090          199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC  278 (449)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~  278 (449)
                      +....   ...+.       +|..+    .+.         ...+..+|.|.|+|..++.+|+|+|.|+||||||++|++
T Consensus       742 ~~~~~---~~~~~-------~~~~~----~~~---------~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~  798 (850)
T TIGR01693       742 GLAKD---PDTIS-------ARRAR----RRR---------LQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR  798 (850)
T ss_pred             CCCcc---ccccc-------cccCC----ccc---------ccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHH
Confidence            75432   11111       11000    000         013457799999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090          279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  330 (449)
Q Consensus       279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l  330 (449)
                      +|.++|++|++|+|.|.|+++.|+|||++..|.++++ .+.+.|+++|.+++
T Consensus       799 ~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       799 TLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999987 68899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=4e-24  Score=238.22  Aligned_cols=174  Identities=25%  Similarity=0.323  Sum_probs=142.9

Q ss_pred             CCCEEEEec-CCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCC-hHHHHH
Q 013090           23 NPPRVVIDN-EACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITD-EGILDY   99 (449)
Q Consensus        23 ~~p~V~i~~-~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~-~~~~~~   99 (449)
                      ..|.|.+.. .+..+.++|+|+++|+||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|..... ..+.+.
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~  754 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA  754 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence            457776655 66778999999999999999999999999999999999986 899999999999998874211 235566


Q ss_pred             HHHHhcccccc-----c-CC--------cceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC
Q 013090          100 IRKCLGPEACF-----A-SS--------MRSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT  163 (449)
Q Consensus       100 I~~~L~~~~~~-----~-~~--------~~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~  163 (449)
                      |+++|.+....     + .+        +.+|.+  +.+..+|+|+|.+.||||||++|+++|+.+|+||++|+|+|.|+
T Consensus       755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~  834 (869)
T PRK04374        755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE  834 (869)
T ss_pred             HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence            66677653220     0 11        123443  66778999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          164 RAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       164 ~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      +++|+|||+++ +|.++.++++ +.|+++|.++|.
T Consensus       835 ~a~D~F~V~d~-~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        835 RAEDQFQITDE-HDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             EEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999994 7888776666 999999988774

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.92  E-value=4.4e-24  Score=239.47  Aligned_cols=174  Identities=25%  Similarity=0.302  Sum_probs=147.2

Q ss_pred             cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCChHHHHHH
Q 013090           22 MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS-SDGCWFMDVFNVTDEDGNKITDEGILDYI  100 (449)
Q Consensus        22 ~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~I  100 (449)
                      .+.|.|.+++....++|+|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++++|.++.+++.++.|
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i  732 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL  732 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence            34689999987778999999999999999999999999999999999998 68999999999999999988776545544


Q ss_pred             H----HHhcccccc------c--CC--------cceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEE
Q 013090          101 R----KCLGPEACF------A--SS--------MRSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEV  158 (449)
Q Consensus       101 ~----~~L~~~~~~------~--~~--------~~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i  158 (449)
                      +    ++|.+....      .  .+        ..+|.+  +.+..+|+|+|.|+||||||++|+++|+++|+||++|+|
T Consensus       733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i  812 (850)
T TIGR01693       733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI  812 (850)
T ss_pred             HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence            4    455442210      0  01        113444  677889999999999999999999999999999999999


Q ss_pred             EccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          159 WTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       159 ~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      .|.++++.|+|||++ ..|.|+.+ ++++.|+++|..+|
T Consensus       813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999998 47888886 78899999987765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3e-24  Score=228.37  Aligned_cols=164  Identities=23%  Similarity=0.324  Sum_probs=147.2

Q ss_pred             CCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHH
Q 013090          244 KQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERV  322 (449)
Q Consensus       244 ~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l  322 (449)
                      ...|.|.+.+....+.|.|+|+++|+|.||+.++.++...|+||++|+|.|+ +|+++|+|+|.+++|.++. +.+...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            4568899888888899999999999999999999999999999999999999 8999999999999999997 4688888


Q ss_pred             HHHHHHHHhh---------cc----------C----------CceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec
Q 013090          323 IQCLKAAIER---------RV----------S----------EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK  373 (449)
Q Consensus       323 ~~~L~~~l~~---------r~----------~----------~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~  373 (449)
                      +..|.+++..         +.          |          +.|.|||++.||||||++|+++|.+++++|++|+|+|+
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            8888888841         10          1          15999999999999999999999999999999999999


Q ss_pred             CCceeeEEEEEcCCCCCCCHHHHHHHHHHhcccee
Q 013090          374 SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL  408 (449)
Q Consensus       374 g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~~~~  408 (449)
                      ||+++|+|+|++..|++++.+....+.+.+.++++
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~  862 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALL  862 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998877788888877554

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2e-23  Score=235.77  Aligned_cols=188  Identities=21%  Similarity=0.400  Sum_probs=160.2

Q ss_pred             cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      .+..+.+.|+|.++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|+++ +|.++.+++++++|++.|..++.
T Consensus       727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~L~~~l~  805 (931)
T PRK05092        727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIEDALS  805 (931)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHc
Confidence            55668999999999999999999999999999999999998 78899999999984 77777778899999999999998


Q ss_pred             CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090          199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC  278 (449)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~  278 (449)
                      ++....   ..+       .+|..       .      ......+..+|.|.|+|..+.++|+|+|+++||||||++|++
T Consensus       806 ~~~~~~---~~~-------~~r~~-------~------~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~  862 (931)
T PRK05092        806 GEVRLP---EAL-------AKRTK-------P------KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTR  862 (931)
T ss_pred             CCCCCc---ccc-------ccccC-------c------cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHH
Confidence            754331   111       11100       0      000013456799999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090          279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      +|+++|+||.+|+|.|.|+++.|+|||++.+|.++.++++++.|++.|.++|.
T Consensus       863 ~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        863 ALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             HHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999887788999999999995

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=7.3e-24  Score=234.42  Aligned_cols=169  Identities=22%  Similarity=0.249  Sum_probs=143.8

Q ss_pred             cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHH
Q 013090           22 MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIR  101 (449)
Q Consensus        22 ~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~  101 (449)
                      ..+|.|.+.+.. .+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|+++|+|+|.+++|.+...+.+.+.|+
T Consensus       585 ~~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~  663 (774)
T PRK03381        585 DGGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLR  663 (774)
T ss_pred             cCCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHH
Confidence            367899998888 8999999999999999999999999999999999999999999999999999988655556777888


Q ss_pred             HHhcccccc------c--C--Cc--------ceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090          102 KCLGPEACF------A--S--SM--------RSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH  161 (449)
Q Consensus       102 ~~L~~~~~~------~--~--~~--------~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~  161 (449)
                      ++|.+....      .  .  ++        ..|.+  +.+.++|+|+|.++||||||++|+++|+.+|+||++|+|+|.
T Consensus       664 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~  743 (774)
T PRK03381        664 RALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL  743 (774)
T ss_pred             HHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence            888764220      0  0  01        12333  556678999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090          162 NTRAAALMQVTDEETGGAISDPERLSVIKELLC  194 (449)
Q Consensus       162 ~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~  194 (449)
                      |++++|+|||+++ +|.+++++  ++.|+++|.
T Consensus       744 g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        744 GADVVDVFYVTGA-AGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CCeEEEEEEEECC-CCCcCchH--HHHHHHHhh
Confidence            9999999999994 88888764  788887763

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=6.2e-24  Score=237.03  Aligned_cols=172  Identities=17%  Similarity=0.268  Sum_probs=140.5

Q ss_pred             cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHH
Q 013090           22 MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYI  100 (449)
Q Consensus        22 ~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I  100 (449)
                      .+.|.|.+.+.+..+.++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..+++.++.|
T Consensus       663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i  741 (856)
T PRK03059        663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV  741 (856)
T ss_pred             CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence            346888898888889999999999999999999999999999999999975 89999999999998888 3344444544


Q ss_pred             ----HHHhcccccc------cCCc--------ceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090          101 ----RKCLGPEACF------ASSM--------RSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT  160 (449)
Q Consensus       101 ----~~~L~~~~~~------~~~~--------~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T  160 (449)
                          +++|.+....      +.++        ..|.+  +++.++|+|+|.++||||||++||++|+.+|+||++|+|+|
T Consensus       742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T  821 (856)
T PRK03059        742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT  821 (856)
T ss_pred             HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence                4555443211      0111        12333  56678999999999999999999999999999999999999


Q ss_pred             cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          161 HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       161 ~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      .|++++|+|||++    .++.+++++++|++.|.++|.
T Consensus       822 ~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        822 LGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999965    224567899999999887664

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.2e-23  Score=234.28  Aligned_cols=182  Identities=20%  Similarity=0.231  Sum_probs=152.9

Q ss_pred             cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      .+..+.+.|.|.++||||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.++ .|.+   .+++.++++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence            44568899999999999999999999999999999999998 78999999999985 5553   3568889999999998


Q ss_pred             CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090          199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC  278 (449)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~  278 (449)
                      ++....   . +.       +|..     .+.         ...+..+|.|.++|..+.++|+|+|+++||||||++|++
T Consensus       761 ~~~~~~---~-~~-------~~~~-----~~~---------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~  815 (869)
T PRK04374        761 GDLQKV---R-PA-------RRAV-----PRQ---------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH  815 (869)
T ss_pred             CCCCcc---c-cc-------cccC-----ccc---------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence            864321   1 11       1100     000         014467899999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090          279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      +|+++|++|+.|+|+|.|+++.|+|||++.+|.++.++++ ++|++.|.++|.
T Consensus       816 ~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        816 VLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            9999999999999999999999999999999998866544 899999988874

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=2.2e-23  Score=235.41  Aligned_cols=177  Identities=24%  Similarity=0.314  Sum_probs=150.7

Q ss_pred             CCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHH
Q 013090           23 NPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIR  101 (449)
Q Consensus        23 ~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~  101 (449)
                      .++.|.+.+....++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++|.+..+++.++.|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            55788899988889999999999999999999999999999999999986 79999999999999998876665666655


Q ss_pred             HHhccccc----c------c-CC---------cceee--ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090          102 KCLGPEAC----F------A-SS---------MRSVG--VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW  159 (449)
Q Consensus       102 ~~L~~~~~----~------~-~~---------~~~V~--~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~  159 (449)
                      +.|...+.    .      . .+         ...|.  ++.+..+|+|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            55543321    0      0 11         01233  35677889999999999999999999999999999999999


Q ss_pred             ccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 013090          160 THNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  200 (449)
Q Consensus       160 T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  200 (449)
                      |.++++.|+|||++. +|.++.++++++.|++.|.++|.++
T Consensus       878 T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        878 TYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             EcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            999999999999994 7889988888999999999999764

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=5.8e-23  Score=229.27  Aligned_cols=182  Identities=18%  Similarity=0.271  Sum_probs=150.8

Q ss_pred             cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      .+..+.+.|.|+++||||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.++ +|. ...++++++|++.|.++|.
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~  750 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA  750 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence            45668899999999999999999999999999999999987 78999999999985 454 4456899999999999998


Q ss_pred             CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090          199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC  278 (449)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~  278 (449)
                      ++.+..   ...       .+|..      +.         ...+..+|.|.+++..+.++|+|+|+++||||||++|++
T Consensus       751 ~~~~~~---~~~-------~~~~~------~~---------~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~  805 (856)
T PRK03059        751 EQAPLP---EPS-------KGRLS------RQ---------VKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR  805 (856)
T ss_pred             CCCCcc---hhh-------ccccc------cc---------ccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence            865321   111       11100      00         013467789999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090          279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      +|+.+|+||+.|+|+|.|+++.|+|||.   +.++.+++++++|++.|.++|+
T Consensus       806 ~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        806 VLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999994   3445566788999999988763

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=4.7e-23  Score=228.03  Aligned_cols=179  Identities=21%  Similarity=0.255  Sum_probs=145.3

Q ss_pred             cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090          120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  199 (449)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  199 (449)
                      .+ .+.+.|.|+|+||||||++||++|+.+||||++|+|+|.+|.+.|+|+|+++ .|.+.    .++++++.|.++|.+
T Consensus       595 ~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~  668 (774)
T PRK03381        595 AD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDG  668 (774)
T ss_pred             CC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcC
Confidence            44 6889999999999999999999999999999999999999999999999985 56543    258899999999988


Q ss_pred             ccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHH
Q 013090          200 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCT  279 (449)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~  279 (449)
                      +....   ..+       .+|.. .+. .+         ....+..+|.|.++|..+.++|+|+|+++||||||++|+++
T Consensus       669 ~~~~~---~~~-------~~~~~-~~~-~~---------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~  727 (774)
T PRK03381        669 DLDVL---ARL-------AAREA-AAA-AV---------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARA  727 (774)
T ss_pred             CCchh---hhh-------hcccc-ccc-cc---------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHH
Confidence            53320   111       01100 000 00         00134577899999999999999999999999999999999


Q ss_pred             HHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          280 LTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       280 L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      |+++|+||++|+|+|.|++++|+|||++.+|.++.++  .+.|+++|.
T Consensus       728 L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        728 LERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            9999999999999999999999999999999999763  667776663

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.9e-23  Score=219.90  Aligned_cols=178  Identities=25%  Similarity=0.326  Sum_probs=143.5

Q ss_pred             HHHh-cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChH
Q 013090           18 LIRR-MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEG   95 (449)
Q Consensus        18 l~~~-~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~   95 (449)
                      +... .++|.|.+.+....+.|+|+|+++|+|.||+.+|+.+...|+||++|+|+| .+|+++|+|+|.+++|.++. ++
T Consensus       664 l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~d  742 (867)
T COG2844         664 LVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-ED  742 (867)
T ss_pred             HHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hh
Confidence            3444 577999988888889999999999999999999999999999999999985 89999999999999999887 44


Q ss_pred             HHHHHHHHhccccc---ccCC------c--------ceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEE
Q 013090           96 ILDYIRKCLGPEAC---FASS------M--------RSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSA  156 (449)
Q Consensus        96 ~~~~I~~~L~~~~~---~~~~------~--------~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A  156 (449)
                      +...++..|.+...   ..++      +        ..|.+  +.+...|+|+|.+.||||||++++++|++++++|++|
T Consensus       743 r~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~A  822 (867)
T COG2844         743 RRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSA  822 (867)
T ss_pred             HHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeee
Confidence            55555554443321   1111      1        12444  5667899999999999999999999999999999999


Q ss_pred             EEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          157 EVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       157 ~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      +|+|.|++|+|+|||++. .|.++.. +....+.+.|.+++.
T Consensus       823 kItT~GErveD~F~vt~~-~~~~l~~-~~~q~l~~~ll~al~  862 (867)
T COG2844         823 KITTFGERVEDVFIVTDA-DGQALNA-ELRQSLLQRLLEALL  862 (867)
T ss_pred             eeccccccceeEEEEecc-ccccCCH-HHHHHHHHHHHHHhc
Confidence            999999999999999994 7888854 444555555544443

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=7e-20  Score=143.60  Aligned_cols=75  Identities=67%  Similarity=1.153  Sum_probs=72.1

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR  333 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r  333 (449)
                      ||+|+|.|+|||||||+|+++|.++|++|++|+|+|.|++|.|+|||++.+|.|+.++.+.+.|+++|.++++||
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999888999999999999864

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=1.3e-17  Score=130.80  Aligned_cols=73  Identities=21%  Similarity=0.256  Sum_probs=69.4

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      +|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.|+.+++++++|+++|.+++.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999999999999 589999999999999999988775

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.73  E-value=2.7e-17  Score=128.11  Aligned_cols=69  Identities=25%  Similarity=0.385  Sum_probs=65.4

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC  194 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~  194 (449)
                      +|+|+|.++||||||++|+++|+++|++|++|+|.|.|++++|+|||++ .+|.|+.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 48999999999999998874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.72  E-value=6.9e-17  Score=149.58  Aligned_cols=141  Identities=15%  Similarity=0.184  Sum_probs=112.1

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh----
Q 013090          256 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----  331 (449)
Q Consensus       256 ~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~----  331 (449)
                      +..+.+|+|.|+|||||++.++++|+++||||.+++++..|+++.-.+.|   .|.+.    ..+.|+..|...-+    
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~~----~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSWN----AITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCChh----HHHHHHHHHHhhhhhcCe
Confidence            45778999999999999999999999999999999999998877655655   34433    44556655544321    


Q ss_pred             ----hcc--------CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC--ceeeEEEEEcCCCCCCCHHHHH
Q 013090          332 ----RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG--KAVNTFYVGGASGYPVDAKIID  397 (449)
Q Consensus       332 ----~r~--------~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~--~~~d~F~v~~~~g~p~~~~~~~  397 (449)
                          ++.        +.++.++|.+.|||||+++||++|.++|+||.+++..|++.  ...++|.+.-....|.+.+ ++
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~-~~  156 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD-AA  156 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC-HH
Confidence                221        12489999999999999999999999999999999999986  6888999887788888866 45


Q ss_pred             HHHHHhc
Q 013090          398 SIRQSIG  404 (449)
Q Consensus       398 ~lr~~l~  404 (449)
                      .|+++|.
T Consensus       157 ~L~~~l~  163 (190)
T PRK11589        157 NIEQAFK  163 (190)
T ss_pred             HHHHHHH
Confidence            5555444

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=8.4e-17  Score=125.33  Aligned_cols=69  Identities=19%  Similarity=0.336  Sum_probs=65.0

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      +|+|+|.++||||||++|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.|+.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999999999988777888888775

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=2.7e-16  Score=123.38  Aligned_cols=72  Identities=18%  Similarity=0.256  Sum_probs=66.8

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE--ccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW--THNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  199 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~--T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  199 (449)
                      |+|+|.++||||||++|+++|+++|++|++|+|.  |.|++++|+||| + ..|.++.++++++.|+++|.+++..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999  999999999999 5 4788899999999999999887753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=4.2e-16  Score=122.28  Aligned_cols=72  Identities=14%  Similarity=0.269  Sum_probs=67.7

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  332 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~--t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~  332 (449)
                      |+++|.|+|||||||+|+++|.++|++|+.|+|+  |.|+++.|+||| +.+|.++.++++.+.|+++|.+++.+
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999  999999999999 88899998878889999999988864

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.61  E-value=1.8e-15  Score=134.30  Aligned_cols=141  Identities=18%  Similarity=0.208  Sum_probs=115.1

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013090          257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE-----  331 (449)
Q Consensus       257 ~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~-----  331 (449)
                      +.|++|++++.||||++..+++...++||||.++|+++.|+.+.-+.   ...|.|-    ....|+..|...=.     
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~---lisgs~d----av~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIM---LISGSWD----AVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEE---EEeeCHH----HHHHHHHHhhcccccCCeE
Confidence            56899999999999999999999999999999999999988765333   3456553    44566655543211     


Q ss_pred             ---hcc--------CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCCCCHHHHHH
Q 013090          332 ---RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDS  398 (449)
Q Consensus       332 ---~r~--------~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p~~~~~~~~  398 (449)
                         .|+        +.++.++|.+.|||||+.++|++|.++|+||.++...|+-..  ...+|++.-..+.|++.+ +.+
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~-i~~  154 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLS-ISA  154 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCc-HHH
Confidence               111        236999999999999999999999999999999999988544  677999988889999999 788


Q ss_pred             HHHHhcc
Q 013090          399 IRQSIGQ  405 (449)
Q Consensus       399 lr~~l~~  405 (449)
                      ||++|+.
T Consensus       155 l~~~f~a  161 (176)
T COG2716         155 LRDAFEA  161 (176)
T ss_pred             HHHHHHH
Confidence            8888775

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=3.9e-15  Score=117.44  Aligned_cols=73  Identities=63%  Similarity=0.953  Sum_probs=67.2

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCC-CCCCCCHHHHHHHHHHhcccccC
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEET-GGAISDPERLSVIKELLCNVLKG  199 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~-g~~i~~~~~~~~l~~~L~~~L~~  199 (449)
                      |+|+|.++||||||++|+++|+.+||||++|+++|.++++.|+|+|+++ + |.++.++++++++++.|.++|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999999999999999999999999999985 5 77787888999999999887753

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.55  E-value=2.9e-14  Score=112.08  Aligned_cols=71  Identities=32%  Similarity=0.520  Sum_probs=64.3

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      +.|+|.++||||||++|+++|+.+|+||++|+|+|. +|++.|+|+|+++ .|.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence            579999999999999999999999999999999997 6999999999984 7777777889999999987654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.54  E-value=5.1e-14  Score=111.01  Aligned_cols=72  Identities=18%  Similarity=0.332  Sum_probs=66.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecC-CCCCCCHHHHHHHHHHHHHHHh
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID-GSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      |+|+|+++||||||++++++|+++||||++|+|.|.|+++.|+|+|.+.+ |.++.++++++++++.|.+++.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999988 8888777788999999988763

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.54  E-value=4.3e-14  Score=111.09  Aligned_cols=70  Identities=26%  Similarity=0.399  Sum_probs=63.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcc
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGP  106 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~  106 (449)
                      +++|.|+++||||||++++++|+.+|+||+.|+|+|. +|+++|+|+|++++|.++.+++.++.|++.|..
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999875 799999999999999988777788888888764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.51  E-value=1.3e-13  Score=109.25  Aligned_cols=70  Identities=16%  Similarity=0.321  Sum_probs=63.5

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090          261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      +++|+|+||||||++++.+|+++|++|++|+|.|+ +++++|+|||++.+|. ..++++.+++++.|.++|.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~   72 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG   72 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999999984 8999999999998777 4455688999999998885

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.51  E-value=9e-14  Score=110.19  Aligned_cols=71  Identities=30%  Similarity=0.347  Sum_probs=63.8

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  199 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  199 (449)
                      +++|.++||||||++|+++|+.+|+||++|+|+| .+|++.|+|||+++ ++. ..++++++++++.|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 89999999999995 455 45578999999999888765

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.49  E-value=7.5e-13  Score=122.73  Aligned_cols=127  Identities=14%  Similarity=0.175  Sum_probs=94.5

Q ss_pred             CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCccc
Q 013090          123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK  202 (449)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~  202 (449)
                      ..+.+|++.|+||||++++|+++|+++||||.+.+...++|.+..++.|+.+        +...+.|+..|...-.. ..
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l~~~-~~   76 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLKGAE-LD   76 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhhhhh-cC
Confidence            4688999999999999999999999999999999999999999999999652        24567777766543221 11


Q ss_pred             cCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHh
Q 013090          203 SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTD  282 (449)
Q Consensus       203 ~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~  282 (449)
                      +   ..       ++ +|..     ... .           ...+          ....|+|++.|||||+++++++|++
T Consensus        77 L---~i-------~v-~~~~-----~~~-~-----------~~~~----------~~~~v~v~G~DrPGIV~~vT~~la~  118 (190)
T PRK11589         77 L---LI-------VM-KRTT-----ARP-R-----------PAMP----------ATVWVQVEVADSPHLIERFTALFDS  118 (190)
T ss_pred             e---EE-------EE-Eecc-----ccc-c-----------ccCC----------ceEEEEEEECCCCCHHHHHHHHHHH
Confidence            1   01       11 1110     000 0           0001          1258899999999999999999999


Q ss_pred             CCceEEEEEEEecC
Q 013090          283 MQYVVFHANIDAEG  296 (449)
Q Consensus       283 ~gl~I~~A~i~t~g  296 (449)
                      +|+||.+-+-.+.+
T Consensus       119 ~~iNI~~L~T~~~~  132 (190)
T PRK11589        119 HHMNIAELVSRTQP  132 (190)
T ss_pred             cCCChhheEEeeec
Confidence            99999998887775

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.44  E-value=7.1e-13  Score=102.02  Aligned_cols=65  Identities=23%  Similarity=0.282  Sum_probs=55.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHh
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCL  104 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L  104 (449)
                      .+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|+.  .....+.++++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence            47999999999999999999999999999999985 799999999999998873  233444454443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.34  E-value=9.2e-12  Score=97.59  Aligned_cols=70  Identities=31%  Similarity=0.571  Sum_probs=64.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccc
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEA  108 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~  108 (449)
                      ++|+|+++|+||+|++++++|+++|+||.+|.++|.+++.+|+|+|.++++.+. +++.++.|+++|...+
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~~~   71 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGPAC   71 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcccc
Confidence            689999999999999999999999999999999988889999999999998877 6678899999988543

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.30  E-value=1.7e-11  Score=94.32  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  330 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l  330 (449)
                      ..|.|+++||||||++++.+|+.+|+||++|+|.|. +|+++|+|+|++.+|+      .-+.|.++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence            478999999999999999999999999999999988 7999999999988775      2256777777665

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.27  E-value=4.1e-11  Score=130.57  Aligned_cols=143  Identities=14%  Similarity=0.121  Sum_probs=117.4

Q ss_pred             EEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc--CCc
Q 013090           38 TVIRVDS-ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA--SSM  114 (449)
Q Consensus        38 t~V~V~~-~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~--~~~  114 (449)
                      -.++|.. +|++|+|.+++++|+.++++|.+|.+.+ +|.++..|.|.+..|.+.++....+.++.++.+.....  .+.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            3677776 9999999999999999999999999999 78888999999999999887777888888887775421  122


Q ss_pred             ceeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090          115 RSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC  194 (449)
Q Consensus       115 ~~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~  194 (449)
                      +...++     ++++|.+.||+|+|+.|+++|.    .|.+|++.|.|..++|.||+.+   +.      ..+.++..+.
T Consensus       626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~  687 (693)
T PRK00227        626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT  687 (693)
T ss_pred             ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence            323332     7999999999999999999999    8999999999999999999985   21      1356677766


Q ss_pred             ccccC
Q 013090          195 NVLKG  199 (449)
Q Consensus       195 ~~L~~  199 (449)
                      .+|.+
T Consensus       688 ~~~~~  692 (693)
T PRK00227        688 RVLAG  692 (693)
T ss_pred             HHHhc
Confidence            66543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.27  E-value=4.2e-11  Score=93.82  Aligned_cols=68  Identities=31%  Similarity=0.483  Sum_probs=61.2

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      +.|+|.++||||+|++|+++|+.+|+||.+|+++|.++.+.|+|+|+++ ++.++ ++++++++++.|..
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~~   69 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIGP   69 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhcc
Confidence            5789999999999999999999999999999999988899999999984 67777 67888888888754

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.19  E-value=1.3e-10  Score=89.95  Aligned_cols=70  Identities=43%  Similarity=0.633  Sum_probs=62.4

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      |.|.|.++|+||+|++|+++|+++|++|.++++.|.++.+.|+|+++++ .|.+. +.+++++++++|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence            5789999999999999999999999999999999988899999999984 67774 5679999999887653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.18  E-value=3.4e-10  Score=100.90  Aligned_cols=126  Identities=16%  Similarity=0.199  Sum_probs=95.8

Q ss_pred             CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCccc
Q 013090          123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK  202 (449)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~  202 (449)
                      .++++|++.|+||||+...|+++..++|||+..+|+.+.|+.+.-+..|+.+        ++...+|++.|.. +..+++
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs--------~dav~~le~~l~~-l~~~~~   73 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS--------WDAVTLLEATLPL-LGAELD   73 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC--------HHHHHHHHHHhhc-ccccCC
Confidence            4578999999999999999999999999999999999999999999999863        4667888887644 444344


Q ss_pred             cCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHh
Q 013090          203 SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTD  282 (449)
Q Consensus       203 ~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~  282 (449)
                      +.   ..+        +|.       ..               .+.     .+...-+.+.|.+.||||++.++++.|.+
T Consensus        74 L~---v~m--------~rt-------~~---------------~~~-----~a~~~~v~v~v~a~DrpgIv~~~T~lf~~  115 (176)
T COG2716          74 LL---VVM--------KRT-------GA---------------HPT-----PANPAPVWVYVDANDRPGIVEEFTALFDG  115 (176)
T ss_pred             eE---EEE--------eec-------CC---------------Ccc-----CCCCceEEEEEEecCCccHHHHHHHHHHh
Confidence            31   111        111       00               000     01122358899999999999999999999


Q ss_pred             CCceEEEEEEEec
Q 013090          283 MQYVVFHANIDAE  295 (449)
Q Consensus       283 ~gl~I~~A~i~t~  295 (449)
                      +|+||.+-.-.|.
T Consensus       116 ~~inie~L~~~~~  128 (176)
T COG2716         116 HGINIENLVSRTY  128 (176)
T ss_pred             cCCchhhceeeee
Confidence            9999998776666

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.17  E-value=7.5e-10  Score=120.81  Aligned_cols=143  Identities=14%  Similarity=0.117  Sum_probs=113.8

Q ss_pred             EEEEEEe-CCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCccccC
Q 013090          126 TAIELTG-SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSG  204 (449)
Q Consensus       126 t~i~v~~-~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  204 (449)
                      ..++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.+...|.|.+ ..|.+. ++   ..+++.+...+.++.+..
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~~  620 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPDP  620 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCcc
Confidence            5677777 9999999999999999999999999999 899999999998 356654 34   567777777777755431


Q ss_pred             CccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHhCC
Q 013090          205 LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQ  284 (449)
Q Consensus       205 ~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~~g  284 (449)
                                               .             ..+|.|.+.+      ++++|++.||||+|+.++++|.   
T Consensus       621 -------------------------~-------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~---  653 (693)
T PRK00227        621 -------------------------A-------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP---  653 (693)
T ss_pred             -------------------------c-------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh---
Confidence                                     0             1346666654      7999999999999999999999   


Q ss_pred             ceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090          285 YVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  330 (449)
Q Consensus       285 l~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l  330 (449)
                       +|..|+++|.|..++|.||+..  |      ..+..+...+.+++
T Consensus       654 -~~~~~~~~~~g~~~~~~~~~~~--~------~~r~~~~~~~~~~~  690 (693)
T PRK00227        654 -DLLWITASTPGATMIVQAALKP--G------FDRATVERDVTRVL  690 (693)
T ss_pred             -hhhhHhhcCCCcceEEEEEecC--c------ccHHHHHHHHHHHH
Confidence             7999999999999999999962  1      12355666665554

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.16  E-value=3.2e-10  Score=87.72  Aligned_cols=70  Identities=26%  Similarity=0.470  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  330 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l  330 (449)
                      |.+.|.++||||+|++++++|+++|++|.++++.+.++.+.|.|++.+.+|.+. +.+++++++++|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999998889999999999999884 4468888999987653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.86  E-value=1.9e-08  Score=77.35  Aligned_cols=69  Identities=38%  Similarity=0.623  Sum_probs=59.5

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  196 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (449)
                      +.|.|.++|+||+|++|+++|+++|++|.++++.+.+++..++|++..+ ++.+. ++++++++++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhh
Confidence            3688999999999999999999999999999999977788899999985 55553 457889999888654

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.78  E-value=5.9e-08  Score=74.56  Aligned_cols=67  Identities=34%  Similarity=0.538  Sum_probs=59.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcc
Q 013090           39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGP  106 (449)
Q Consensus        39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~  106 (449)
                      +|.|.++|+||+|++++++|.++|++|..+++.+.+++..++|+|..+++.. .+++.++.|++.|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~   68 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALED   68 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999998766999999999988776 445678888888754

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.76  E-value=2.3e-08  Score=74.00  Aligned_cols=68  Identities=22%  Similarity=0.372  Sum_probs=57.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccc
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEA  108 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~  108 (449)
                      ++|+|.|||+.||-+++|+++.+.||+|.++.++|+|.|+.-+|+|.......   +-.++.|++.|.+.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~---~~rW~lLK~RL~~~C   68 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI---KVRWDLLKNRLMSAC   68 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC---cccHHHHHHHHHhcC
Confidence            47999999999999999999999999999999999999999999998754331   235677888777653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.75  E-value=4.7e-08  Score=77.36  Aligned_cols=64  Identities=25%  Similarity=0.430  Sum_probs=54.4

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  196 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (449)
                      +.+|++.|+||||+++.++++|+++||||.+.+..+.++++..++.|+-+        ++..++++++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999863        45678888887664

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.62  E-value=5.9e-07  Score=75.26  Aligned_cols=114  Identities=22%  Similarity=0.225  Sum_probs=88.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCccee
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSV  117 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V  117 (449)
                      -+|.|+..|+||-|+.++..|.++|+||..-.|.-.+.+.+--..|.++           ++-.++|.+..      ..|
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g------F~V   66 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG------FTV   66 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC------cEE
Confidence            4799999999999999999999999999988887666666656666322           34456666542      112


Q ss_pred             eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090          118 GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD  173 (449)
Q Consensus       118 ~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~  173 (449)
                      ..     .-++-|..+|+||-|+.|+.+|.++++|+.++..+++. ..+.-+|.+.+
T Consensus        67 r~-----~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          67 RE-----TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             Ee-----eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            21     34688889999999999999999999999999999854 55666666554

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.53  E-value=9.1e-07  Score=69.94  Aligned_cols=65  Identities=17%  Similarity=0.169  Sum_probs=51.0

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  330 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l  330 (449)
                      +.+|+|.|+||||++++++++|+++|+||.+.++.+.++++.-.+.|.-+       +...++|+..|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998887766666322       346678888887654

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.49  E-value=3.6e-07  Score=67.78  Aligned_cols=68  Identities=16%  Similarity=0.241  Sum_probs=59.7

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ++|+|.|||+.||-.+|++++.++|++|..+.++|.|..+.-+|+|...  ..++  +-+|..|+++|.++.
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~C   68 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSAC   68 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999999999999999963  3333  468899999987653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.40  E-value=1e-06  Score=69.91  Aligned_cols=63  Identities=25%  Similarity=0.435  Sum_probs=51.2

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      +++|++.|+||||++++|++.|+++||||.+.+.++.+++....+.+..+  .      ...+.|++.|..
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~------~~~~~l~~~l~~   63 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W------DAIAKLEAALPG   63 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c------ccHHHHHHHHHH
Confidence            36899999999999999999999999999999999988888777776642  1      124666666655

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.32  E-value=9.9e-07  Score=69.48  Aligned_cols=64  Identities=22%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      +++|.|+||||++++++++|+++||||.+.+..+.++.....|.+.-| .+.      ..+.+++.|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHH
Confidence            478999999999999999999999999999988888888888888864 221      2355666665433

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.30  E-value=3.5e-06  Score=63.79  Aligned_cols=48  Identities=23%  Similarity=0.366  Sum_probs=39.6

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC--ceEEEEEEee
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT--RAAALMQVTD  173 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~--~~~dvf~V~~  173 (449)
                      |.|.|.++||||+|++|+.+|+++|+||..+...+.++  ....++.+.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~   50 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD   50 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence            57899999999999999999999999999999999766  3334444433

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.30  E-value=4.2e-06  Score=63.35  Aligned_cols=48  Identities=27%  Similarity=0.312  Sum_probs=41.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--EEEEEEEEEc
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGC--WFMDVFNVTD   85 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g--~~~d~F~V~~   85 (449)
                      +.|.|.++||||+|++++++|+++|+||..+++.+.++  +.+.++.+.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~   50 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD   50 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence            57899999999999999999999999999999997554  6666666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.24  E-value=5.1e-06  Score=65.39  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090          261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  330 (449)
Q Consensus       261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l  330 (449)
                      +|+|.|+||||++++++++|+++|+||.+.+..+.++++.-.|.+.-+.+.      ..+.|++.|+...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence            478999999999999999999999999999988887766556666433221      2356666666544

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.23  E-value=7.1e-06  Score=65.02  Aligned_cols=48  Identities=19%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD   85 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~   85 (449)
                      .+|++.|+||||+.++++++|+++|+||.+.+.+..+++|.-...+.-
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~   49 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG   49 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence            579999999999999999999999999999999998888876666653

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.99  E-value=1.2e-05  Score=65.26  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=51.7

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  196 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (449)
                      .+|++.|+||||++++|+++|+++||||...+..+.+++....+.+.-+  +...    ..+.+++.|...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l   66 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEEL   66 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHH
Confidence            5799999999999999999999999999999999988888777887753  2011    235666666553

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.98  E-value=1.5e-05  Score=62.49  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCC
Q 013090          339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYP  390 (449)
Q Consensus       339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p  390 (449)
                      .+++.|+|||||+++||++|.++|+||...+..+.  .....|++.-....|
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~--~~~~~f~~~~~~~~~   50 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD--PDSGRFFMRVEFELE   50 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec--CCCCeEEEEEEEEeC
Confidence            37899999999999999999999999999998763  233457665443334

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.98  E-value=2.2e-05  Score=62.29  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=41.2

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCC
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYP  390 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p  390 (449)
                      +++.+.||||++++|+++|.++|+||.+.+..+.+..  ..+.|.+.-....|
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p   54 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP   54 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence            7899999999999999999999999999999888643  34566554443444

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.89  E-value=3.9e-05  Score=60.03  Aligned_cols=34  Identities=29%  Similarity=0.566  Sum_probs=32.4

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT  160 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T  160 (449)
                      +|++.|+||||++++|+++|+++||||.+.+..+
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            4789999999999999999999999999999987

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=97.85  E-value=6e-05  Score=61.30  Aligned_cols=49  Identities=24%  Similarity=0.365  Sum_probs=43.5

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                      .+++++.|+||||++++|+++|+++|+||....-.+.++.+...+.+.-
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~   51 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI   51 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe
Confidence            5789999999999999999999999999999999888877766666654

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.85  E-value=3.5e-05  Score=62.50  Aligned_cols=65  Identities=14%  Similarity=0.126  Sum_probs=47.1

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  329 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~  329 (449)
                      .+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.   ..+..  ...+.|++.|...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~---~~~~~--~~~~~L~~~l~~l   66 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVD---ISESN--LDFAELQEELEEL   66 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEE---eCCCC--CCHHHHHHHHHHH
Confidence            47899999999999999999999999999999988876554444443   22211  1235566655543

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.79  E-value=0.025  Score=61.85  Aligned_cols=262  Identities=13%  Similarity=0.162  Sum_probs=142.7

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCC
Q 013090           44 SANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQS  122 (449)
Q Consensus        44 ~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~  122 (449)
                      .++.+|.++++...|+++|++|.--..+. ..+..--.|.|.+.+         .....+.|..... ......+.  ..
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d---------~~~~~~~l~~l~~-~~~~~~i~--~~  345 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE---------LKKAEAVAEAIAP-ALGGAEVL--VE  345 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH---------HHHHHHHHHHHHH-HcCCCcEE--Ee
Confidence            46889999999999999999998654433 233333356674321         1111222221100 00011122  23


Q ss_pred             CceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090          123 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  199 (449)
Q Consensus       123 ~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  199 (449)
                      .+...|.|.|.   +.+|+++++..+|++.|++|....  +.  ...-.|.|..          ...++..+.|++.+.-
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~Is~vv~~----------~d~~~av~~Lh~~f~~  411 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVKVSCVIDA----------EDGDKALRAVCEAFEL  411 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence            45678888886   799999999999999999996655  21  2223344443          1223333444444432


Q ss_pred             ccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEE-cCCCcchHHHHHH
Q 013090          200 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT-SKDRPKLVFDTVC  278 (449)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~DrpgLl~~i~~  278 (449)
                      +...    ..+.      +-|..                    ....+.-.|..  ..+...|++. .+++||+++++..
T Consensus       412 ~~~~----~~~~------~~~~~--------------------~~~~~v~gIa~--~~~~~~i~l~~~~~~~g~~a~if~  459 (587)
T PRK07431        412 EDSQ----IEIN------PTASG--------------------QDEPEVRGVAL--DRNQAQLAIRNVPDRPGMAASIFG  459 (587)
T ss_pred             CCcc----cccC------ccccC--------------------CCCCcEEEEEc--cCCEEEEEECCCCCCccHHHHHHH
Confidence            2111    0010      00000                    00111111111  1233444443 6788999999999


Q ss_pred             HHHhCCceEEEEEEEec-CC--eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-c--c-CCceEEEEEeC---CCc
Q 013090          279 TLTDMQYVVFHANIDAE-GP--EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R--V-SEGLKLELCTT---DRV  348 (449)
Q Consensus       279 ~L~~~gl~I~~A~i~t~-g~--~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-r--~-~~~~~l~v~~~---Drp  348 (449)
                      .|+++|++|..-..... ++  ..-=.|.+ +.     .+..+...+.+.|...+.. .  . ..-..+.+.+.   .+|
T Consensus       460 ~l~~~~i~id~i~~~~~~~~~~~~~isf~v-~~-----~~~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~  533 (587)
T PRK07431        460 ALAEANISVDMIVQSQRCRSDGTRDISFTV-PK-----EDREAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTP  533 (587)
T ss_pred             HHHHcCCeEEEEEecCCCCCCCceeEEEEE-cH-----HHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCc
Confidence            99999999998654322 21  11112444 21     0111222222223322211 0  1 22467889985   889


Q ss_pred             ChHHHHHHHHHhCCCcEEEEE
Q 013090          349 GLLSNVTRIFRENSLTVTRAE  369 (449)
Q Consensus       349 GLL~~it~~l~~~~i~I~~a~  369 (449)
                      |+++++..+|.+.||+|....
T Consensus       534 gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        534 GVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             CHHHHHHHHHHHCCCcEEEee
Confidence            999999999999999996655

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.76  E-value=0.00013  Score=57.94  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcCC
Q 013090           39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDG------CWFMDVFNVTDED   87 (449)
Q Consensus        39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~------g~~~d~F~V~~~~   87 (449)
                      .|+|.|+|+||++++++++|+++|+||.+.+..+.+      +.+.-.+.|.-+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~   55 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA   55 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC
Confidence            378999999999999999999999999999998865      6666666675553

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.75  E-value=0.00026  Score=56.12  Aligned_cols=64  Identities=27%  Similarity=0.403  Sum_probs=49.8

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc--CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~--~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+.-.|.+.-.       +.+++..+-+.|++
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence            4678999999999999999999999999999999984  5666666766642       35777777777654

>PRK00194 hypothetical protein; Validated

Probab=97.74  E-value=0.00012  Score=59.60  Aligned_cols=49  Identities=24%  Similarity=0.292  Sum_probs=43.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD   85 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~   85 (449)
                      ...|+|.|+||||++++++++|+++|+||.+....+.++.+.-.+.+.-
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~   51 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI   51 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe
Confidence            5689999999999999999999999999999998888888777666643

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.63  E-value=0.0011  Score=55.88  Aligned_cols=112  Identities=15%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEE
Q 013090          261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKL  340 (449)
Q Consensus       261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l  340 (449)
                      .|+|...++||=|...+.+|.+.|+||.--.|.-+|++-.=..+| +       .+   ++-.+.|+++=- -....-++
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV-~-------~~---d~A~~~Lee~gF-~Vr~~dVl   72 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVV-D-------RP---DEAHSVLEEAGF-TVRETDVL   72 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEc-C-------Ch---HHHHHHHHHCCc-EEEeeeEE
Confidence            688999999999999999999999999999998888776544444 1       11   333344442210 01124567


Q ss_pred             EEEeCCCcChHHHHHHHHHhCCCcEEEEEEe-ecCCceeeEEEEE
Q 013090          341 ELCTTDRVGLLSNVTRIFRENSLTVTRAEVA-TKSGKAVNTFYVG  384 (449)
Q Consensus       341 ~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~-T~g~~~~d~F~v~  384 (449)
                      -|.-.|+||=|+.|+.+|.++++|+..+--. +..++|.-.|.+.
T Consensus        73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e  117 (142)
T COG4747          73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE  117 (142)
T ss_pred             EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh
Confidence            7788999999999999999999999988743 4445566565553

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.56  E-value=0.002  Score=63.62  Aligned_cols=109  Identities=7%  Similarity=-0.003  Sum_probs=64.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcc-cccccCCcc
Q 013090           39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGP-EACFASSMR  115 (449)
Q Consensus        39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~-~~~~~~~~~  115 (449)
                      +|+|.|+||||+.+.++++|+++|+||.+.+.+.+  +|+|.-.+.+.-+.. ..+    .+.|+++|.. .... . .-
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~~----~~~l~~~l~~~~~~~-~-~l   74 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLE----ESSLLAAFKSALAEK-F-EM   74 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CCC----HHHHHHHHHHHHHHH-h-CC
Confidence            58999999999999999999999999999999974  478777777754422 122    2344444444 2110 0 00


Q ss_pred             eeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEE
Q 013090          116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVV  154 (449)
Q Consensus       116 ~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~  154 (449)
                      .+.+........|-|.+.-+---|..|......-.+++.
T Consensus        75 ~i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~  113 (280)
T TIGR00655        75 TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE  113 (280)
T ss_pred             EEEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence            111111112233444444445556666666665555433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.56  E-value=0.0015  Score=64.83  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=33.7

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS   71 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~   71 (449)
                      ...+|+|.|+||||+.+.++++|+++|+||.+.+.+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            346899999999999999999999999999999997

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.54  E-value=0.0012  Score=65.44  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE--ec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh----
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----  331 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~--t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~----  331 (449)
                      ..+|+|.|+|||||++.++..|+++|+||.+.+..  +. +.++. .+-+.+.....+    ..++|++.|.+.-+    
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l   83 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAA----SVDTFRQEFQPVAEKFDM   83 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCC----CHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999999999999986  33 33332 111211111112    23556666654332    


Q ss_pred             ----hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090          332 ----RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT  364 (449)
Q Consensus       332 ----~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~  364 (449)
                          +...+..++=|-+.-+..-|.++-...++..++
T Consensus        84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~  120 (289)
T PRK13010         84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELD  120 (289)
T ss_pred             eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCC
Confidence                111223344444444455566666666665554

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.52  E-value=0.0033  Score=62.37  Aligned_cols=102  Identities=18%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh----
Q 013090          258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA--EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----  331 (449)
Q Consensus       258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t--~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~----  331 (449)
                      ...+|+|.|+|||||+++++++|+++|+||.+.+..+  .++.+.=.+.+ +.+..+.    ..+.|++.|++.-+    
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v-~~~~~~~----~~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF-EGDGLIF----NLETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE-EeCCCCC----CHHHHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999999  65543222222 2111112    24556655554332    


Q ss_pred             ----hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090          332 ----RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT  364 (449)
Q Consensus       332 ----~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~  364 (449)
                          +...++.++-|-+.-+---|..+-...+...++
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~  116 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP  116 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence                111233444444444444555555555554443

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.49  E-value=0.00014  Score=58.59  Aligned_cols=49  Identities=24%  Similarity=0.316  Sum_probs=44.0

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                      ..+|+|.|.||||+.+.|+++|+++|+||++-.-.-..|.....+.|.-
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~   51 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI   51 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence            5689999999999999999999999999999877668888888888875

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.47  E-value=0.001  Score=51.59  Aligned_cols=61  Identities=15%  Similarity=0.241  Sum_probs=47.6

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      |.|.++||||+|++|+.++++.|+||......+. ++.+...|.+.-.       +.++++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence            6889999999999999999999999998888764 4565555665531       34677777777654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.43  E-value=0.00032  Score=69.52  Aligned_cols=54  Identities=15%  Similarity=0.199  Sum_probs=42.8

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCC
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD  392 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~  392 (449)
                      .+.+++.|.|||||+++||++|.++|+||..+...+.  ...+.|.+.-....|.+
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~--~~~~~F~m~~~~~~p~~   60 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDD--RLSGRFFMRVEFHSEEG   60 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeec--CCCCeEEEEEEEecCCC
Confidence            5789999999999999999999999999999986533  46667776433333433

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.37  E-value=0.0015  Score=51.71  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE  107 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~  107 (449)
                      +.+.|.+.||||+|++|+.++++.|+||....+.+  .++.+.-.|.|.-      .+.+.++.|.+.|...
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~i   72 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQI   72 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCTS
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHCC
Confidence            47899999999999999999999999999999987  4788888888753      3444667777777654

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.33  E-value=0.0041  Score=61.45  Aligned_cols=100  Identities=9%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc-----
Q 013090          261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR-----  333 (449)
Q Consensus       261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r-----  333 (449)
                      +|+|.|+||||+++.++..|+++|+||.+.+....  ++++.-.+.+ +.++...    ..++|++.|.+++...     
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v-~~~~~~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEF-QLEGFRL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEE-EeCCCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999999999999998885  3544323333 3222122    2456776666623211     


Q ss_pred             ----cCCceEEEEEeCCCcChHHHHHHHHHhCCCcE
Q 013090          334 ----VSEGLKLELCTTDRVGLLSNVTRIFRENSLTV  365 (449)
Q Consensus       334 ----~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I  365 (449)
                          ..+..++=|-+.-+..-|.+|-...++..++.
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~  112 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDA  112 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCc
Confidence                12234444445555556777777777666643

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.30  E-value=0.0063  Score=60.38  Aligned_cols=99  Identities=9%  Similarity=0.070  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh------
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE------  331 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~------  331 (449)
                      .+|+|.|+||||+++.+++.|+++|+||.+.+..+.  ++.+.-.+.+..+.+.      ..+.|++.|++.-+      
T Consensus         8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~i   81 (286)
T PRK13011          8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQW   81 (286)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcEE
Confidence            589999999999999999999999999999998755  3333323333222221      13556655554432      


Q ss_pred             --hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090          332 --RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT  364 (449)
Q Consensus       332 --~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~  364 (449)
                        +...+..++-+-+.-+.--|..+...++...++
T Consensus        82 ~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~  116 (286)
T PRK13011         82 ELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELP  116 (286)
T ss_pred             EEeecccCceEEEEEcCCcccHHHHHHHHHcCCCC
Confidence              111223344444444555566666666666554

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.30  E-value=0.0048  Score=61.26  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=50.6

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE  107 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~  107 (449)
                      ...+|+|.|+||||+.+.++++|+++|+||.+.+.++  .+|.|.-.+.+.- +..+.    ..+.|+++|...
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l   73 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAAL   73 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHH
Confidence            4578999999999999999999999999999999998  7787766666643 11111    135566655544

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.29  E-value=0.00027  Score=56.98  Aligned_cols=49  Identities=20%  Similarity=0.237  Sum_probs=43.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD   85 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~   85 (449)
                      ..+|+|.+.||||+.+.++++|+++|.||.+-..+-.+||+--.+.|.-
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~   51 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI   51 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence            3589999999999999999999999999998777778899887777743

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.26  E-value=0.0023  Score=50.54  Aligned_cols=64  Identities=8%  Similarity=0.163  Sum_probs=47.3

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      +.+.+...|+||+|+.|+++|+.+|.||.++.+....+...-.+-++- .|   ++..++++..+|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~-~~---~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA-VC---TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE-EC---CHHHHHHHHHHHhC
Confidence            578999999999999999999999999999986643333333332321 23   44557888888887

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.25  E-value=0.001  Score=61.02  Aligned_cols=71  Identities=20%  Similarity=0.383  Sum_probs=49.8

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecC
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKG  412 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~  412 (449)
                      +.+++.+.|+||+|++|+.+|+++|+||.++.+..........+.+.-    |-++..+++|+++|..  .+++|..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv----~~~~~~ieqL~kQL~KLidVl~V~~   75 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVV----PGDDRTIEQLTKQLYKLVNILKVQD   75 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEE----ECCHHHHHHHHHHHHHHhHhhEEEe
Confidence            578999999999999999999999999999998653333333444431    3344445677776665  2344444

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.21  E-value=0.0028  Score=49.14  Aligned_cols=60  Identities=7%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      +.|.+.||||+|++++.++++.|.||.+....+. .+.+.-.|.+.      +.+...++.+...|.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ve------v~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVD------APSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEE------cCCHHHHHHHHHHHh
Confidence            6789999999999999999999999999888776 45665555552      223346666666665

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.18  E-value=0.0023  Score=49.98  Aligned_cols=59  Identities=20%  Similarity=0.285  Sum_probs=44.2

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      .|.|.+.||+|+|++|+.++++.|+||.+..+.+. +.  ..|.+.-       .+.++++.+-++|++
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHhC
Confidence            37899999999999999999999999999999875 33  2222222       134667777776654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.11  E-value=0.0041  Score=49.83  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhccc--eeeec
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT--ILKVK  411 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~~--~~~~~  411 (449)
                      ..+.+...|+||+|+.|+.+|..+|.||.++.+..........+-++-..|   +...++++..+|.+.  +++|.
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~KlidVikV~   75 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQINVLTVE   75 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCccEEEEE
Confidence            368889999999999999999999999999997755444444444432223   555678888888873  45655

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.06  E-value=0.0019  Score=47.41  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=40.1

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD  173 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~  173 (449)
                      |.+..+|+||.|++++.+|.++|+||.+..++..+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999998765 67777887765

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.04  E-value=0.0043  Score=47.09  Aligned_cols=60  Identities=18%  Similarity=0.256  Sum_probs=41.9

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-----CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLC  194 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-----~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~  194 (449)
                      +.|..+|+||+|++|+.+++++|+||.+......     .+.+...|.+...       +.+.++.+.+.|.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence            3578899999999999999999999998876653     2344444444431       2355666666553

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.94  E-value=0.0059  Score=46.50  Aligned_cols=45  Identities=13%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT  172 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~  172 (449)
                      ..+.|..+|+||.|++|+.+|+++|+||.+..+...++.  .++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            357889999999999999999999999999998876654  444443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.87  E-value=0.0078  Score=49.46  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=54.4

Q ss_pred             CceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090          336 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN  413 (449)
Q Consensus       336 ~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~  413 (449)
                      ....|++...|+||+|+.|+..|..+|.||.++.+...+......+.+.-.     ++..++++..+|.+  .+++|.+-
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KLidVikV~~l   81 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEKLEDVLKVRRN   81 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhCCcCEEEEEEC
Confidence            357899999999999999999999999999999987655554443433211     23457889999987  34566543

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.83  E-value=0.009  Score=53.91  Aligned_cols=72  Identities=18%  Similarity=0.362  Sum_probs=52.6

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN  413 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~  413 (449)
                      +.+++...|+||.|++|+.+|+++|+||.+..+...++...-.+.+.- ++   +...++++..+|.+  .+++|.+-
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kli~V~~V~~~   75 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKLVDVIKVSDL   75 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcCccEEEEEec
Confidence            478999999999999999999999999999987665534333332221 23   45557889998887  34566553

acetohydroxyacid synthase is a synonym.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.83  E-value=0.004  Score=45.62  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=37.8

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-CceeeEEEEE
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVG  384 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~~~~d~F~v~  384 (449)
                      +++...|+||.|++++.+|.++|+||.+..+...+ +++.-.|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            46788999999999999999999999999977654 5666677664

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.81  E-value=0.01  Score=46.02  Aligned_cols=62  Identities=21%  Similarity=0.313  Sum_probs=46.3

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHH-HHHHHHHHhcc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPE-RLSVIKELLCN  195 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~-~~~~l~~~L~~  195 (449)
                      .+.+.++|+||++++|+.+|+++|+||......+. ++.+.-.|.+...       +.+ .++.+-++|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            47899999999999999999999999999887653 3555555655531       123 66777776654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.76  E-value=0.011  Score=46.78  Aligned_cols=50  Identities=20%  Similarity=0.381  Sum_probs=39.6

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCC
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASG  388 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g  388 (449)
                      +.+.+...|+||.|++|..+|+++|+||.+......+. ...=.|+|. .+|
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~   52 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEG   52 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EEC
Confidence            45778889999999999999999999999998666644 344577773 445

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.76  E-value=0.01  Score=45.29  Aligned_cols=47  Identities=15%  Similarity=0.261  Sum_probs=37.4

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-C-ceEEEEEEe
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-T-RAAALMQVT  172 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~-~~~dvf~V~  172 (449)
                      ..+.+..+|+||.|++++..|+++|+||.+....... + .....|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4688899999999999999999999999988877642 2 334455554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.75  E-value=0.011  Score=45.46  Aligned_cols=62  Identities=16%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-C-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-N-TRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      -|.+.+.|+||++++|+.+|+++|+||......+. + +.+.-.+.+..       .+.+.++.+-+.|++
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-------~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-------TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-------CCHHHHHHHHHHHHc
Confidence            47889999999999999999999999999987654 3 33333333322       124555666565543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.0057  Score=58.92  Aligned_cols=44  Identities=14%  Similarity=0.232  Sum_probs=38.3

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEE
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMD   79 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d   79 (449)
                      ...++++.|+|++|+.++|++.|+++|+||.++..+++  .|+|+.
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm   51 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM   51 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE
Confidence            45789999999999999999999999999999999973  455543

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.64  E-value=0.0079  Score=57.97  Aligned_cols=66  Identities=18%  Similarity=0.447  Sum_probs=47.5

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc--CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~--~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ..+++++.|+|+||+.+.|++.|+++||||..+.-++.  +|+...-.....  .+.+.    ..+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence            56899999999999999999999999999999999862  455443333332  23332    23556666554

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.64  E-value=0.014  Score=52.87  Aligned_cols=72  Identities=21%  Similarity=0.396  Sum_probs=51.5

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN  413 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~  413 (449)
                      +.+++...|+||.|++|+.+|+++|+||.+..+....+...-.+.+. ..|   +...++++..+|.+  .+++|.+-
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~-V~~---~~~~i~qi~kQl~KLidV~~V~~~   76 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIV-TSG---DEQVIEQITKQLNKLIDVLKVVDL   76 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEE-EEC---CHHHHHHHHHHHhccccEEEEEec
Confidence            47899999999999999999999999999998765543333322221 122   55557888888887  34566553

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.62  E-value=0.009  Score=45.45  Aligned_cols=45  Identities=20%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  384 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~  384 (449)
                      ..+.|...|+||.|++|+.+|.++|+||.+.-+...++  ...|.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEE
Confidence            35788999999999999999999999999998766555  3566663

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.58  E-value=0.023  Score=42.90  Aligned_cols=61  Identities=18%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-C-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-N-TRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      .+.+.+.|+||++++|+.+|+++|++|.+....+. + +.+.-.|.+..+       + ..++.+.+.|+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-------D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-------H-HHHHHHHHHHhC
Confidence            47789999999999999999999999999998775 3 333334444321       2 445566665543

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.52  E-value=0.0084  Score=46.23  Aligned_cols=64  Identities=17%  Similarity=0.295  Sum_probs=43.4

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      +.+.+.+.|+||+|++|+.+|.++|++|......+..+ ....+..++.    +.+....+++.+.|.+
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence            45789999999999999999999999999998755432 2122223222    2344445555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.52  E-value=0.011  Score=44.74  Aligned_cols=61  Identities=16%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec-CCceee-EEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVN-TFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~-g~~~~d-~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      .|.+.+.|+||+|++|+++|.++|++|.+....+. ++.... .|.+ +.   + + ..++.+.++|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~---~-~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-EG---D-D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-EC---C-H-HHHHHHHHHHhC
Confidence            47889999999999999999999999999997765 333223 3333 22   2 3 445677776664

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.52  E-value=0.018  Score=43.62  Aligned_cols=34  Identities=12%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090          262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE  295 (449)
Q Consensus       262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~  295 (449)
                      +.|.++|+||+|++++.+|.+.|+||.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3578899999999999999999999998776543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.47  E-value=0.021  Score=45.04  Aligned_cols=61  Identities=18%  Similarity=0.319  Sum_probs=45.8

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eee-EEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVN-TFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d-~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      +.+++...++||.|+.|+++|+.+|.||.+..+....+. ... ++.+    +   +...+++|..+|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v----~---~~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV----A---SERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE----C---CCchHHHHHHHHhc
Confidence            578999999999999999999999999999997654322 222 3333    2   33346788888876

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.41  E-value=0.022  Score=43.12  Aligned_cols=46  Identities=20%  Similarity=0.465  Sum_probs=36.6

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEe
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVT  172 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~  172 (449)
                      .+.+.++|+||.|++|+..|++++++|.+....+.+ +.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            578899999999999999999999999988877653 4444444444

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.38  E-value=0.03  Score=44.16  Aligned_cols=63  Identities=10%  Similarity=0.166  Sum_probs=45.7

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceE-EEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAA-ALMQVTDEETGGAISDPERLSVIKELLCNV  196 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~-dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (449)
                      ..|.+...|+||.|++|+++|+..|.||.+-.+.- .+.... -++.+.    |    ++...+.+...|.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~----~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----C----TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----C----CHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999988874 333333 233322    2    235667777776654

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.38  E-value=0.01  Score=44.61  Aligned_cols=45  Identities=20%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEe
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVT  172 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~  172 (449)
                      +.+.++|+||++++|+.+|+++|+||.+......+  +...-.|.+.
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~   48 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD   48 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence            67899999999999999999999999999988754  5555666663

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.37  E-value=0.036  Score=45.62  Aligned_cols=86  Identities=8%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLK  339 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~  339 (449)
                      ..+.+...|+||+|.+++..|+..|+||.+-.+.-++..-+-.+.+.-. +    + ..++++.+.|...+.       +
T Consensus         9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~-~~i~Qi~kQL~KLid-------V   75 (96)
T PRK08178          9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----D-QRLEQMISQIEKLED-------V   75 (96)
T ss_pred             EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----c-hHHHHHHHHHhCCcC-------E
Confidence            4689999999999999999999999999999887664222222333221 2    2 467888888875443       4


Q ss_pred             EEEEeCCC-cChHHHHHHHH
Q 013090          340 LELCTTDR-VGLLSNVTRIF  358 (449)
Q Consensus       340 l~v~~~Dr-pGLL~~it~~l  358 (449)
                      +++.-.+. +-+..++..+|
T Consensus        76 ikV~~l~~~~~v~~e~~~~~   95 (96)
T PRK08178         76 LKVRRNQSDPTMFNKIAVFF   95 (96)
T ss_pred             EEEEECCCchhHHHHHHHHh
Confidence            55555333 33333354443

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.37  E-value=0.021  Score=42.84  Aligned_cols=44  Identities=14%  Similarity=0.223  Sum_probs=38.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 013090           40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNV   83 (449)
Q Consensus        40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V   83 (449)
                      +.|.+.|++|++++++++|.++|+||........  ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            5688999999999999999999999999998764  3777777777

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.32  E-value=0.0042  Score=48.21  Aligned_cols=53  Identities=11%  Similarity=0.149  Sum_probs=42.0

Q ss_pred             EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEee--cCCceeeE--EEEEcCCCCCCC
Q 013090          339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT--KSGKAVNT--FYVGGASGYPVD  392 (449)
Q Consensus       339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T--~g~~~~d~--F~v~~~~g~p~~  392 (449)
                      .+|+++..||-.++|+|-+|+.++++|.+|+|..  .+++...+  |.+.+..+. ++
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~   58 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KL   58 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-cc
Confidence            4899999999999999999999999999999974  35665554  566555443 44

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.27  E-value=0.027  Score=42.39  Aligned_cols=33  Identities=18%  Similarity=0.412  Sum_probs=30.3

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEee
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT  372 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T  372 (449)
                      |.+.+.|+||.|++|+.+|.++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678899999999999999999999999998665

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.25  E-value=0.021  Score=52.33  Aligned_cols=64  Identities=14%  Similarity=0.243  Sum_probs=46.8

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ..+.+.+.|+||+|++|+++|+..|+||.+-.+.+  ..+....++.+..    .    ....+.|..+|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~----~----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG----D----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC----C----HHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999976  3344434444332    1    233667777776644

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.22  E-value=0.028  Score=45.89  Aligned_cols=52  Identities=21%  Similarity=0.356  Sum_probs=41.8

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCC
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGY  389 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~  389 (449)
                      .+.|-+...|+||-|+++-.+|+++|||+.+.+......+ .+=.||| |..|.
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~   66 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK   66 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence            3667777799999999999999999999999997765444 5558888 45564

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.14  E-value=0.032  Score=43.16  Aligned_cols=61  Identities=13%  Similarity=0.199  Sum_probs=43.0

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHH-HHHHHHHHHH
Q 013090          261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDA-ERERVIQCLK  327 (449)
Q Consensus       261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~-~~~~l~~~L~  327 (449)
                      .+.|.++||||++++++..|+++|.||......+. ++.+.=.|-+.-      .+.. .++.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v------~~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT------STMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc------CchHHHHHHHHHHHh
Confidence            47899999999999999999999999999876554 344443454422      1212 4566665554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.13  E-value=0.041  Score=44.12  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=47.3

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC-ceE-EEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT-RAA-ALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~-~~~-dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ..|.+...|+||.|++|+++|+..|+||.+-.+..... ..- .++.+..   |    ++...+.+...|.+..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCCc
Confidence            36889999999999999999999999999999886433 332 3344331   2    2456677777776543

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.11  E-value=0.024  Score=43.21  Aligned_cols=46  Identities=17%  Similarity=0.345  Sum_probs=36.7

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-C-ceeeEEEE
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-G-KAVNTFYV  383 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~-~~~d~F~v  383 (449)
                      +.+.+...|+||.|++++++|.++|++|.+....... . .+.-.|.+
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v   49 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISF   49 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEE
Confidence            4688899999999999999999999999988766552 2 33345555

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.11  E-value=0.044  Score=42.64  Aligned_cols=64  Identities=19%  Similarity=0.344  Sum_probs=43.7

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec-CCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~-g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      +-+...|+||-|++|..+|+++|+||.+...... ++.++=.|++. ..|.+-+.. .+.+-++|..
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~~~~~-~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHIDDPD-VKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCCCCHH-HHHHHHHHHH
Confidence            3455679999999999999999999999975544 34566688884 445322333 3444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.11  E-value=0.042  Score=42.77  Aligned_cols=60  Identities=15%  Similarity=0.190  Sum_probs=44.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090           39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE  107 (449)
Q Consensus        39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~  107 (449)
                      .+.|.+.||+|++++|+.++++.|.||....+.+. +...  |.+.-      .+...++.|.+.|...
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v------~~~~~L~~li~~L~~i   61 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPT------IEFEKLQTLMPEIRRI   61 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEe------cCHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999998776 5522  33321      2233456676776654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.09  E-value=0.044  Score=49.44  Aligned_cols=64  Identities=23%  Similarity=0.323  Sum_probs=47.9

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ..|++...|+||.|++|+++|+..|+||.+.-+...+  +...-+|.|.    +    ++...+.+...|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcCc
Confidence            3688999999999999999999999999998887654  3333444443    2    2456777777776644

acetohydroxyacid synthase is a synonym.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.06  E-value=0.044  Score=41.21  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=36.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090           40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT   84 (449)
Q Consensus        40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~   84 (449)
                      +.+.++|+||.+++++.+|+++|++|.......  .++...-.|.+.
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~   48 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD   48 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence            567899999999999999999999999888765  245555445553

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.03  E-value=0.028  Score=43.08  Aligned_cols=46  Identities=22%  Similarity=0.430  Sum_probs=37.4

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEee
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTD  173 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~  173 (449)
                      +.+..+|+||.+++|+.+|+++|+||.+.....  .++.+.-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            457899999999999999999999999888765  3456666666653

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.02  E-value=0.022  Score=42.58  Aligned_cols=44  Identities=23%  Similarity=0.382  Sum_probs=36.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 013090           40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNV   83 (449)
Q Consensus        40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V   83 (449)
                      +.|..+|+||-|++++++|.++|+||.+...+..  .+...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            6788999999999999999999999998877643  3566555656

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=96.00  E-value=2.7  Score=46.02  Aligned_cols=190  Identities=15%  Similarity=0.168  Sum_probs=111.7

Q ss_pred             CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc--
Q 013090           35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC--  109 (449)
Q Consensus        35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~--  109 (449)
                      .+...|.|.+.   +.+|+++++..+|.+.|++|....  + .+.. -.|.|...+     .++..+.|++.+.....  
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~~d-----~~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDAED-----GDKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence            35568888875   789999999999999999996443  2 2222 134453321     12355666666633221  


Q ss_pred             -ccCC-----ccee-eccCCCceEEEEEE-eCCccchHHHHHHHHHhCCCeEEEEEEEc-cCC--ceEEEEEEeeCCCCC
Q 013090          110 -FASS-----MRSV-GVKQSMDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNT--RAAALMQVTDEETGG  178 (449)
Q Consensus       110 -~~~~-----~~~V-~~~~~~~~t~i~v~-~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~--~~~dvf~V~~~~~g~  178 (449)
                       ..+-     ...| ......+...|++. .++.+|++++|...|+++|++|..-.... .++  ..--.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence             0111     1112 22334455566665 67889999999999999999998775432 222  2233344432     


Q ss_pred             CCCCHHHHHHHHHHhcccccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCc
Q 013090          179 AISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKD  258 (449)
Q Consensus       179 ~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~  258 (449)
                           .......+.+.+ +.....                                           .-.+.++    ++
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------~~~i~~~----~~  518 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------GAEVEDG----PA  518 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC-------------------------------------------CceEEEe----CC
Confidence                 112222222211 111000                                           0012221    24


Q ss_pred             eeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEE
Q 013090          259 YSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHAN  291 (449)
Q Consensus       259 ~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~  291 (449)
                      ...|.|.|.   .+||++.++..+|.+.|++|....
T Consensus       519 va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        519 IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            567888875   789999999999999999996644

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.00  E-value=0.033  Score=42.61  Aligned_cols=58  Identities=26%  Similarity=0.503  Sum_probs=40.6

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec--CCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQ  401 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~--g~~~~d~F~v~~~~g~p~~~~~~~~lr~  401 (449)
                      +-+...|+||.+++|+.+|.++|+||.+......  ++.+.=+|.+   ++ +...+..+.|++
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v---~~-~~~~~~~~~l~~   61 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV---DE-PVPDEVLEELRA   61 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe---CC-CCCHHHHHHHHc
Confidence            3467899999999999999999999999886543  3444445555   23 444444455554

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK08577 hypothetical protein; Provisional

Probab=95.97  E-value=0.063  Score=47.16  Aligned_cols=69  Identities=22%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       121 ~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      +....+.|.+.+.|+||+|++|+.+|+++++||.+....+..  +.+...|.+.-+  ..    ...+..+.+.|.+
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~--~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS--KS----DIDLEELEEELKK  122 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC--Cc----hhhHHHHHHHHHc
Confidence            445588999999999999999999999999999998877643  333344444321  11    1345556565543

>PRK08577 hypothetical protein; Provisional

Probab=95.95  E-value=0.033  Score=48.98  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=34.9

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  374 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g  374 (449)
                      .+.+.+.+.|+||+|++|+++|.+++++|.+....+..
T Consensus        56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            68899999999999999999999999999999876653

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=95.93  E-value=0.055  Score=49.02  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=47.7

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ..|+|...|+||.|++|+++|+.+|+||.+.-+....  +...-+|.|..        ++...+.+...|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence            4689999999999999999999999999998876543  33344454442        2456777777776544

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.90  E-value=0.0095  Score=45.29  Aligned_cols=46  Identities=20%  Similarity=0.287  Sum_probs=37.8

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090           40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD   85 (449)
Q Consensus        40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~   85 (449)
                      +.+.+.|+||++++++.+|.++|.||......+.++.+.-.|.+..
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~   47 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS   47 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence            5778999999999999999999999987766555577766666643

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.89  E-value=0.018  Score=44.72  Aligned_cols=67  Identities=19%  Similarity=0.439  Sum_probs=47.2

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecC-CCCCCCHHHHHHHHHHHHH
Q 013090          262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHID-GSPVKSDAERERVIQCLKA  328 (449)
Q Consensus       262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~  328 (449)
                      |++.++-||-.|||++-+|+.+++-|++|.|...  +++-..+|.++..+ ++.+........+.+.+..
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~   72 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTK   72 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHH
Confidence            7889999999999999999999999999999776  55555555444333 3344433334555555443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.78  E-value=0.021  Score=42.64  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN  162 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~  162 (449)
                      ++.+.-+|+||-|++++.+|+++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367888999999999999999999999988876543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.73  E-value=0.013  Score=44.43  Aligned_cols=44  Identities=11%  Similarity=0.225  Sum_probs=34.0

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEE
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  383 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v  383 (449)
                      +-+.+.|+||+|++|+.+|.++|+||......+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888655444444444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.71  E-value=0.089  Score=38.45  Aligned_cols=60  Identities=30%  Similarity=0.437  Sum_probs=42.3

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLC  194 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~  194 (449)
                      |.+.++|+||.+.+|+..|.+++++|....+...+ +.....|.+..+       +......+.+.|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~   61 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-------DLEHLARIMRKLR   61 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            46789999999999999999999999999887655 333344444432       1344555555543

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.62  E-value=0.09  Score=38.44  Aligned_cols=61  Identities=20%  Similarity=0.322  Sum_probs=42.7

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      |.+.+.|+||++++++.+|.+++++|....+...++. +.-.|.+...     +......+.+.|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4678999999999999999999999999998766522 2223333211     23335666666654

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.60  E-value=0.11  Score=40.90  Aligned_cols=48  Identities=21%  Similarity=0.205  Sum_probs=39.3

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEee
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD  173 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~  173 (449)
                      +.+.+..+|+||.|++|..+|+++|+||.+-..... .+...-.|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            457778899999999999999999999999887664 345567788865

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.59  E-value=0.045  Score=41.53  Aligned_cols=56  Identities=18%  Similarity=0.439  Sum_probs=37.8

Q ss_pred             CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          346 DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       346 DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      |+||.|..|+.+|+..|.||.++.+........-.+.++ ..|   +...+++|..+|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~-v~~---~~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIV-VSG---DDREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEE-EES----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEE-Eee---CchhHHHHHHHHhc
Confidence            789999999999999999999999887433333333332 122   12235678888876

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.59  E-value=0.071  Score=41.64  Aligned_cols=49  Identities=20%  Similarity=0.336  Sum_probs=38.9

Q ss_pred             EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCC
Q 013090          339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASG  388 (449)
Q Consensus       339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g  388 (449)
                      .+-+...|+||-|+++-..|+++|||+.+.+...... ..+=.|+| |..|
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            3445568999999999999999999999999776544 35558888 5556

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK04435 hypothetical protein; Provisional

Probab=95.57  E-value=0.12  Score=46.22  Aligned_cols=69  Identities=20%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       121 ~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ..+....|.+...|+||+|++|..+|+.+|+||........ +|.+.-.|.+...  +  .  ...++.|-+.|++
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L~~  134 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKLRN  134 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHHHc
Confidence            35678889999999999999999999999999998877654 4555556666541  1  1  2356666666654

>PRK11899 prephenate dehydratase; Provisional

Probab=95.53  E-value=0.055  Score=53.46  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=45.9

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHH
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAK  394 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~  394 (449)
                      .+.+-+...|+||.|+++-.+|+++|||+++.+....+.+ .+=+||| |..|..-++.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~  251 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRN  251 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHH
Confidence            4566666789999999999999999999999998866544 5668888 6777655555

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.52  E-value=0.083  Score=41.71  Aligned_cols=62  Identities=16%  Similarity=0.268  Sum_probs=45.1

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCc-eEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTR-AAALMQVTDEETGGAISDPERLSVIKELLCNV  196 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~-~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (449)
                      ..|.+...|+||.|++|+++|+..|.||.+-.+... ++. .--++.|.+         +...+.|...|.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhcC
Confidence            578999999999999999999999999999998753 333 334444421         23456666666553

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.52  E-value=0.089  Score=40.56  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH  161 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~  161 (449)
                      +.+.-+|+||-|++++.+|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788899999999999999999999998876553

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.42  E-value=0.083  Score=39.86  Aligned_cols=46  Identities=11%  Similarity=0.081  Sum_probs=37.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEE
Q 013090           39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVT   84 (449)
Q Consensus        39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~   84 (449)
                      .+.+.++|++|.|++++..|++++++|.+....+. ++.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998887764 35544445554

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.39  E-value=0.13  Score=39.26  Aligned_cols=34  Identities=24%  Similarity=0.484  Sum_probs=31.0

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEe
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA  371 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~  371 (449)
                      +.+.+...|+||.|.+++.+|.++|+||.++...
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            5788899999999999999999999999988754

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.27  E-value=0.14  Score=35.45  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=35.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEE
Q 013090           40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDG-CWFMDVFNVT   84 (449)
Q Consensus        40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~-g~~~d~F~V~   84 (449)
                      |.+.++|++|.+.+++++|.++|++|........+ .....++.+.
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVV   46 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEE
Confidence            46889999999999999999999999999887643 3333344443

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.21  E-value=0.13  Score=35.52  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  374 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g  374 (449)
                      +.+.+.|+||++++|+.+|.++|++|..+......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46788999999999999999999999999976654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK07334 threonine dehydratase; Provisional

Probab=95.09  E-value=0.11  Score=54.22  Aligned_cols=65  Identities=18%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-----CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-----~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      -...|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.|.-       .+.++++.+...|++
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999998764     345444444442       235677777777655

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=94.97  E-value=0.14  Score=39.14  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=39.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT   84 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~   84 (449)
                      +.+.+..+|+||.+.+++++|.++|+||.+....-  .++...-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            57889999999999999999999999999887652  356666677764

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.86  E-value=0.13  Score=48.74  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=47.3

Q ss_pred             CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHH
Q 013090          335 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDS  398 (449)
Q Consensus       335 ~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~  398 (449)
                      +.++.|-+.-.||||.+..|+.+|.+++|||..+.+.......+-+..+.  .+.+++++.+++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~--vD~~v~~~vl~~  207 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIE--IDKNIDDHIKDA  207 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEE--eCCCCCHHHHhh
Confidence            45778888899999999999999999999999999887644444444442  255777775443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=94.55  E-value=0.21  Score=38.38  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090          262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE  295 (449)
Q Consensus       262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~  295 (449)
                      +.|.-+|+||-|++++..|+++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5678899999999999999999999998766554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=94.55  E-value=0.27  Score=43.84  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=53.3

Q ss_pred             cCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090           31 NEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE  107 (449)
Q Consensus        31 ~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~  107 (449)
                      ....+..+.+.+...|+||+|+++.++|+++|+||....... .+|.+.-.|.|...+.     ...++.|.+.|...
T Consensus        63 ~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~i  135 (147)
T PRK04435         63 EMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRNL  135 (147)
T ss_pred             ccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHcC
Confidence            334556778999999999999999999999999999887765 4677766777754321     12456666666654

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=94.44  E-value=0.14  Score=50.27  Aligned_cols=57  Identities=16%  Similarity=0.245  Sum_probs=46.8

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHH
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAK  394 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~  394 (449)
                      .|.|-+...|+||-|+++-.+|+.+|||+++.+....+.. ++=+||| |-.|..-+..
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~~~  251 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDDPL  251 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCcHh
Confidence            5777788889999999999999999999999998766544 6668888 6777665544

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.00  E-value=0.21  Score=39.19  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=39.0

Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-CceeeEEEEEcCCCC
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGY  389 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~~~~d~F~v~~~~g~  389 (449)
                      +-+...|+||-|+++-.+|+.+|||+.+.+..... ...+=.||| |..|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence            44556899999999999999999999999977654 445668888 45553

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.87  E-value=0.27  Score=54.90  Aligned_cols=64  Identities=22%  Similarity=0.310  Sum_probs=49.8

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc--CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~--~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ...|.|.+.||+|||++|+.+++..++||.+..+.+.  ++.+...|.|.-       .+.+++..+-..|++
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999998774  455555555542       235677777777654

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=93.86  E-value=0.24  Score=37.53  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             CccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          134 DRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       134 DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      |+||.|.+|+++|...|.||.+..+..  .++...-++.+..    .    +...+.|...|.+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhccC
Confidence            789999999999999999999999987  3333344444442    1    134566767666543

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.76  E-value=0.39  Score=36.63  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=39.5

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      +.|.-|||||-|.+++.+++. |.||....-...+-....++..-.      ..+++..+.+.+.|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            357789999999999999999 999988765543322222222222      1124666777776643

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.75  E-value=1.2  Score=46.12  Aligned_cols=99  Identities=10%  Similarity=0.118  Sum_probs=66.0

Q ss_pred             ceeEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 013090          258 DYSVVTIT---SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R  333 (449)
Q Consensus       258 ~~tvv~V~---~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-r  333 (449)
                      +...|.|.   ..++||++.++...|.+.|++|..-.........  .|+| +.        +..+.+.+.|.+.+.. .
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V-~~--------~d~~~a~~~L~~~~~~~~  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTV-DE--------TDADEAVRALKDQSGAAG  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEE-eH--------HHHHHHHHHHHHHHHhcC
Confidence            45678887   5688999999999999999999764322122111  2555 21        1233444445444311 0


Q ss_pred             ------cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEE
Q 013090          334 ------VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTR  367 (449)
Q Consensus       334 ------~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~  367 (449)
                            ...-..+.+.+.   ++||+++++.++|.+.|+||..
T Consensus       328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence                  122366778885   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK06635 aspartate kinase; Reviewed

Probab=93.70  E-value=0.61  Score=48.48  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=65.1

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCC
Q 013090           44 SANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQS  122 (449)
Q Consensus        44 ~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~  122 (449)
                      ..++||.++++..+|.++|++|.-...+. .+|..--.|.|.+.+         .+...+.|..... ...-..+  ...
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~---------~~~a~~~L~~~~~-~~~~~~i--~~~  337 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDD---------LEKALELLEEVKD-EIGAESV--TYD  337 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHH---------HHHHHHHHHHHHH-HcCcceE--EEc
Confidence            56789999999999999999999644432 333444456663211         1222233332100 0000111  223


Q ss_pred             CceEEEEEEe---CCccchHHHHHHHHHhCCCeEEEEE
Q 013090          123 MDHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       123 ~~~t~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                      .+...++|.|   ++.||.+++|..+|+++|+||....
T Consensus       338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            4567788876   6899999999999999999998753

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.37  E-value=0.74  Score=37.55  Aligned_cols=69  Identities=14%  Similarity=0.281  Sum_probs=46.2

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090          258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  331 (449)
Q Consensus       258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g--~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~  331 (449)
                      +.+-+.+..+|+||-|+++...|++.|+|+.+-.---..  .+.+ .||| +.+|. . + ...+.+.+.|.+.+.
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y-~FfV-Dieg~-~-~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEY-EFFI-NLDKK-S-A-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceE-EEEE-EEEcC-C-C-HHHHHHHHHHHHHhC
Confidence            335555666999999999999999999999885543332  2222 3667 77776 2 3 355556566665553

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.35  E-value=1.3  Score=45.93  Aligned_cols=106  Identities=19%  Similarity=0.284  Sum_probs=66.3

Q ss_pred             CeEEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090           36 NATVIRVD---SANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS  112 (449)
Q Consensus        36 ~~t~V~V~---~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~  112 (449)
                      +...|+|.   ..+++|.++++..+|.++|++|.--... ... .--.|.|...+     .+...+.|++.+...    .
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~-~~Is~~V~~~d-----~~~a~~~L~~~~~~~----~  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSE-TSISLTVDETD-----ADEAVRALKDQSGAA----G  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCC-ceEEEEEeHHH-----HHHHHHHHHHHHHhc----C
Confidence            44567777   5788999999999999999999733222 111 11245553211     012223333322111    0


Q ss_pred             CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEE
Q 013090          113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVS  155 (449)
Q Consensus       113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~  155 (449)
                       -..+  ....+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       328 -~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 -LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             -CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence             0111  22345678888885   6899999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.20  E-value=0.73  Score=35.67  Aligned_cols=63  Identities=11%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             EEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 013090          263 TITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  328 (449)
Q Consensus       263 ~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  328 (449)
                      .+..+|+||-|+++...|+++|+||.+-.-.-. +....=.||| +.+|.+- + ...+.+.+.|.+
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i-d~~~~~~-~-~~~~~~l~~l~~   66 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV-DFEGHID-D-PDVKEALEELKR   66 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEECCCC-C-HHHHHHHHHHHH
Confidence            345589999999999999999999999744333 2222223666 5556422 2 345555555553

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.16  E-value=0.36  Score=50.05  Aligned_cols=57  Identities=21%  Similarity=0.296  Sum_probs=45.6

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHH
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAK  394 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~  394 (449)
                      .+.|-+...|+||.|+++-..|+.+|||+.+.+....+. ..+=.||| |..|..-++.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~~  354 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSAE  354 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCHH
Confidence            455666778999999999999999999999999875544 46668888 6777555554

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.11  E-value=0.046  Score=43.96  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=28.0

Q ss_pred             EEEEEeCC-ccchHHHHHHHHHhCCCeEEEEE
Q 013090          127 AIELTGSD-RPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       127 ~i~v~~~D-rpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                      +|+|.|.| ..|++++|+++|+++|+||..-+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~   32 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR   32 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            37899999 99999999999999999996544

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK06291 aspartate kinase; Provisional

Probab=93.04  E-value=3.4  Score=43.92  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=74.2

Q ss_pred             CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090          257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  332 (449)
Q Consensus       257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-  332 (449)
                      ++...|.|.+.   +.||+++++...|.+.|++|......+.....  .|.| +.        ...+...+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V-~~--------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVV-DE--------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEE-eH--------HHHHHHHHHHHHHHHHh
Confidence            34567888765   68999999999999999999885443333222  2444 21        1223334444444331 


Q ss_pred             ---c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeE-EEE
Q 013090          333 ---R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV  383 (449)
Q Consensus       333 ---r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~-F~v  383 (449)
                         .   ...-..+.+.+.   ++||+++++..+|.+.||+|.-..   +|.....+ |.|
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV  445 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVV  445 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEE
Confidence               1   122367888885   799999999999999999998555   44444444 455

>PRK07334 threonine dehydratase; Provisional

Probab=92.97  E-value=0.5  Score=49.20  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-----GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-----g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      +.|.|.+.||||+|.+|+.+|++.++||.+....+.     ++.+.=.|.| .     +.+.+.++.+...|.
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i-~-----V~d~~~L~~vi~~Lr  393 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVI-E-----TRDAAHLQEVIAALR  393 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEE-E-----eCCHHHHHHHHHHHH
Confidence            689999999999999999999999999999988764     3444333333 2     223346677776665

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.96  E-value=0.48  Score=52.77  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=49.1

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC-ceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT-RAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~-~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ...|.|.+.||+|+|++|+.+++..++||.++.+.+.++ .+...|.|.-       .+.+++..|-..|+.
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999877653 4444455442       124677777776654

>PRK08210 aspartate kinase I; Reviewed

Probab=92.76  E-value=2.6  Score=43.88  Aligned_cols=99  Identities=19%  Similarity=0.280  Sum_probs=66.0

Q ss_pred             CeEEEEEEeCCC-cchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCc
Q 013090           36 NATVIRVDSANK-HGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSM  114 (449)
Q Consensus        36 ~~t~V~V~~~Dr-~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~  114 (449)
                      +...|+|...+. +|.++++...|.++|+||.-...+.. .   -.|.+.+.         ..+.+.+.|....      
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~~---------~~~~a~~~l~~~~------  330 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSDE---------DSEKAKEILENLG------  330 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcHH---------HHHHHHHHHHHhC------
Confidence            445677776555 99999999999999999996643322 1   24555321         1223334443321      


Q ss_pred             ceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEE
Q 013090          115 RSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVS  155 (449)
Q Consensus       115 ~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~  155 (449)
                      ..+.  ...+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       331 ~~v~--~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        331 LKPS--VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             CcEE--EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            0111  2345667778875   7899999999999999999974

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.59  E-value=0.47  Score=42.80  Aligned_cols=46  Identities=15%  Similarity=0.449  Sum_probs=37.2

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC--ceEEEEEEe
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT--RAAALMQVT  172 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~--~~~dvf~V~  172 (449)
                      -+.+.+.++||.|.++++++++.|.||..|+.+..++  .+.--|.+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence            4778899999999999999999999999999987433  444444444

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.56  E-value=0.73  Score=35.12  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=40.0

Q ss_pred             EEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 013090          263 TITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  328 (449)
Q Consensus       263 ~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  328 (449)
                      .|.-+||||=|..++..+.. |.||.+-+-...+.....+++.....+     .+..+++.++|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD-----REDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence            57789999999999999999 999998665444322223344433222     2456667766653

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=92.55  E-value=0.63  Score=39.78  Aligned_cols=52  Identities=12%  Similarity=0.091  Sum_probs=41.9

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCC
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGY  389 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~  389 (449)
                      .+.|-+...|+||-|++|-..|+++|||+.+.+....+.. .+=.||| |..|.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~   93 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVH   93 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeC
Confidence            4667777799999999999999999999999998777555 4447777 45553

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.38  E-value=0.49  Score=44.69  Aligned_cols=53  Identities=21%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEee
Q 013090          121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTD  173 (449)
Q Consensus       121 ~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~  173 (449)
                      -..+...+-+.-.|+||.+..|+.+|.++|+||...++..  .++.+..++.+..
T Consensus       144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            3445667788889999999999999999999999999987  4567777776654

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.36  E-value=0.59  Score=52.04  Aligned_cols=65  Identities=22%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      -.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.-       .+.+++..|-..|+.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT  674 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            356789999999999999999999999999999998764 44444444442       234677777776654

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK06635 aspartate kinase; Reviewed

Probab=92.35  E-value=1.8  Score=44.93  Aligned_cols=103  Identities=13%  Similarity=0.190  Sum_probs=66.6

Q ss_pred             ceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 013090          258 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IER  332 (449)
Q Consensus       258 ~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~---l~~  332 (449)
                      +...|+|. ..++||++.++..+|.+.|++|.....+... ++..=.|.|..         +..+...+.|.+.   +.-
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence            34455555 4678999999999999999999975443222 12322354421         2233334444432   110


Q ss_pred             c----cCCceEEEEEe---CCCcChHHHHHHHHHhCCCcEEEEE
Q 013090          333 R----VSEGLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAE  369 (449)
Q Consensus       333 r----~~~~~~l~v~~---~DrpGLL~~it~~l~~~~i~I~~a~  369 (449)
                      +    ...-..+++.+   .|+||++++|.++|.++|++|....
T Consensus       332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            0    12246688876   5899999999999999999998753

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.15  E-value=0.29  Score=51.17  Aligned_cols=61  Identities=18%  Similarity=0.336  Sum_probs=49.7

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ  401 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~  401 (449)
                      .+.|-+.-.|+||.++.|+.+|.++|+||...++...|+.|--+|.+   ++ +++++.+++|++
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~  398 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA  398 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence            48888899999999999999999999999999998888777666666   33 555565566664

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=92.12  E-value=0.74  Score=51.46  Aligned_cols=62  Identities=23%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      ..|.|.+.||+|||.+|+.++++.++||....+.+.  ++.+.-.|-|.      +.+-..+..|...|.
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~L~  730 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHHHh
Confidence            588899999999999999999999999999998775  35555455542      333346666666665

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=91.79  E-value=0.92  Score=50.61  Aligned_cols=73  Identities=3%  Similarity=0.058  Sum_probs=50.7

Q ss_pred             EEEecCCCCce-eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 013090          249 VNVVNCYDKDY-SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL  326 (449)
Q Consensus       249 V~v~~~~~~~~-tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L  326 (449)
                      |.++......| +.|.|.+.||+|+|.+|+.++++.++||.+..+.+.+ +.+.-.|-|.      +.+-..+..|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT------ARDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence            34543322233 5888999999999999999999999999999987764 4554444441      22334566666665


Q ss_pred             H
Q 013090          327 K  327 (449)
Q Consensus       327 ~  327 (449)
                      .
T Consensus       689 r  689 (702)
T PRK11092        689 R  689 (702)
T ss_pred             h
Confidence            5

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.17  E-value=0.92  Score=50.15  Aligned_cols=66  Identities=26%  Similarity=0.362  Sum_probs=49.0

Q ss_pred             CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEE-EEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAA-LMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~d-vf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      .-...|.|.+.||+|||++|+.+|+..++||.+....+.+++... .|.+.       +.+..++..|-.+|.+
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~i~~~l~~  691 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGRVLARLKQ  691 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHHHHHHHhc
Confidence            345779999999999999999999999999999998876555443 33332       2234677777666544

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=90.84  E-value=0.97  Score=40.82  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEee--cCCceeeEEEEEc
Q 013090          339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT--KSGKAVNTFYVGG  385 (449)
Q Consensus       339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T--~g~~~~d~F~v~~  385 (449)
                      -+++.+.++||.|.++|.+++++|.||+.+.-..  .|+.+---|.+.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence            3788899999999999999999999999999543  3556666666643

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=90.66  E-value=0.83  Score=34.65  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=35.8

Q ss_pred             CceEEEEEEeC----CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          123 MDHTAIELTGS----DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       123 ~~~t~i~v~~~----DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                      .+...|+|.|+    |.||++++++.+|++.|++|....  |.   .-+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence            45677888888    899999999999999999998776  32   246666664

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.59  E-value=7.2  Score=44.53  Aligned_cols=102  Identities=4%  Similarity=0.122  Sum_probs=68.1

Q ss_pred             CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH---
Q 013090          257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI---  330 (449)
Q Consensus       257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l---  330 (449)
                      ++.+.|.|.+.   ++||++.++...|.+.|++|.....++..-..  .|.|..         ...+...+.|.+.+   
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~---------~d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQ---------SDAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeH---------HHHHHHHHHHHHHHHHH
Confidence            45678888765   68999999999999999999775544322111  255522         12233333343332   


Q ss_pred             -hh-cc------CCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEE
Q 013090          331 -ER-RV------SEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  369 (449)
Q Consensus       331 -~~-r~------~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~  369 (449)
                       .. ..      ..-..+.+.+.   ++||+++++..+|.+.||+|....
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence             21 11      22467888875   789999999999999999997544

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=90.08  E-value=1.7  Score=48.43  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=46.1

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      +.|.|.+.||+|+|.+|+.+|++.++||.+..+.+.. +.+.-.|-|      .+.+-..+..|...|.
T Consensus       611 v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~i------eV~~~~~L~~ii~~L~  673 (683)
T TIGR00691       611 VDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITV------EIKNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEE------EECCHHHHHHHHHHHh
Confidence            5888999999999999999999999999999997773 554333434      1333345666665554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09034 aspartate kinase; Reviewed

Probab=89.95  E-value=6.2  Score=41.85  Aligned_cols=110  Identities=15%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             eEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090           37 ATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS  113 (449)
Q Consensus        37 ~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~  113 (449)
                      .+.|++..   ++++|.++++..+|+++|++|.--  . .+. .--.|.|.+.+-.   . ..+..+.+.|.....    
T Consensus       308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~-~sis~~v~~~~~~---~-a~~~~l~~el~~~~~----  375 (454)
T PRK09034        308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGI-DDLSIIIRERQLT---P-KKEDEILAEIKQELN----  375 (454)
T ss_pred             EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCC-cEEEEEEeHHHhh---H-HHHHHHHHHHHHhhC----
Confidence            44566654   568999999999999999999864  2 221 2234667543211   0 011223233321110    


Q ss_pred             cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090          114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWT  160 (449)
Q Consensus       114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T  160 (449)
                      ...+  ....+...|.+.|.   +.||+++++..+|+++|+||....-.+
T Consensus       376 ~~~I--~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        376 PDEL--EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             CceE--EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            0111  22345677888764   789999999999999999998775444

>PRK08818 prephenate dehydrogenase; Provisional

Probab=89.63  E-value=0.74  Score=47.40  Aligned_cols=50  Identities=20%  Similarity=0.364  Sum_probs=39.5

Q ss_pred             CceEEEEEeC-CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcC
Q 013090          336 EGLKLELCTT-DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA  386 (449)
Q Consensus       336 ~~~~l~v~~~-DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~  386 (449)
                      ..+.|.+.-. |+||-|++|+.+|.++||||.+.++ ......+-.|++.-.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            3577777775 9999999999999999999999998 333344545888533

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=89.49  E-value=1  Score=34.20  Aligned_cols=45  Identities=13%  Similarity=0.338  Sum_probs=34.1

Q ss_pred             CceeEEEEEcC----CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEE
Q 013090          257 KDYSVVTITSK----DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR  306 (449)
Q Consensus       257 ~~~tvv~V~~~----DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~  306 (449)
                      .+...|.|.++    |.||+++.+...|++.|++|....  |   +..+.++|.
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~   52 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK   52 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence            45567888887    799999999999999999998855  3   333556663

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=89.41  E-value=2.6  Score=33.61  Aligned_cols=61  Identities=20%  Similarity=0.275  Sum_probs=36.7

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ++.|.-|||||-|++++.+|+  +.||....-.. ..+.+.-.+.+..+  ++    ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence            578889999999999999999  55665433332 22333333333321  11    3556666665543

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=89.31  E-value=2.1  Score=44.69  Aligned_cols=67  Identities=22%  Similarity=0.179  Sum_probs=48.5

Q ss_pred             CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE----c-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW----T-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~----T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      .+..+.++|.-+|+||-|++|+.+|.++|+||.+....    . ..+.+.-+|.|...       +++..+.|.+.|.+
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            55678899999999999999999999999999877664    2 23455666666541       13444566665543

>PLN02551 aspartokinase

Probab=89.04  E-value=12  Score=40.52  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=72.4

Q ss_pred             CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHH---HHHH
Q 013090          257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCL---KAAI  330 (449)
Q Consensus       257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L---~~~l  330 (449)
                      ++.+.|+|.+.   +++|.+.++...|.+.|++|..-  .+.....  .|.+...+   +..   .+.+++.|   ...+
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe~sI--s~~v~~~~---~~~---~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSI--SLTLDPSK---LWS---RELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccCCEE--EEEEehhH---hhh---hhhHHHHHHHHHHHh
Confidence            45578888765   68999999999999999999886  3332221  35553221   111   11222222   2223


Q ss_pred             hh--c---cCCceEEEEEeC--CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeE-EEE
Q 013090          331 ER--R---VSEGLKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV  383 (449)
Q Consensus       331 ~~--r---~~~~~~l~v~~~--DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~-F~v  383 (449)
                      ++  +   ...-..|.+++.  .+||+++++-.+|.+.||||....   +|.....+ |.|
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV  491 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIV  491 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEE
Confidence            21  1   123466777764  689999999999999999998776   44444454 555

>PRK06291 aspartate kinase; Provisional

Probab=88.96  E-value=6  Score=42.05  Aligned_cols=110  Identities=19%  Similarity=0.231  Sum_probs=69.8

Q ss_pred             CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090           36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS  112 (449)
Q Consensus        36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~  112 (449)
                      +...|+|.+.   +.+|.++++.++|.++|++|.-....+....  -.|.|.+.+-     +...+.|.+.+....    
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d~-----~~av~~L~~~~~~~~----  388 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEADL-----EKALKALRREFGEGL----  388 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHHH-----HHHHHHHHHHHHHhc----
Confidence            3456777654   6899999999999999999986543332211  1455533110     123344444443210    


Q ss_pred             CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEE
Q 013090          113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVW  159 (449)
Q Consensus       113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~  159 (449)
                       ...+  ....+...|.|.|.   +++|+++++..+|++.|+||..-.-.
T Consensus       389 -~~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg  435 (465)
T PRK06291        389 -VRDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG  435 (465)
T ss_pred             -Ccce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence             0111  22345677888886   68999999999999999999854433

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=88.77  E-value=0.26  Score=39.54  Aligned_cols=32  Identities=16%  Similarity=0.192  Sum_probs=28.4

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEE
Q 013090           39 VIRVDSAN-KHGILLEVVQVLTDLNLIVTKAYI   70 (449)
Q Consensus        39 ~V~V~~~D-r~GLl~~i~~vL~~~gl~I~~A~I   70 (449)
                      +|+|.+++ ..|++++++++|+++|+||.+-+-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~   33 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR   33 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            48899999 999999999999999999985443

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK09181 aspartate kinase; Validated

Probab=88.74  E-value=16  Score=39.10  Aligned_cols=113  Identities=14%  Similarity=0.171  Sum_probs=74.7

Q ss_pred             CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090          257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  332 (449)
Q Consensus       257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-  332 (449)
                      ++.+.|+|.+.   +.+|+..++...|.+.|++|..  +.+.....  .|.|.. +   .   ..++++.+.|...+.. 
T Consensus       327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss~~si--s~~v~~-~---~---~~~~~~~~~L~~~~~~~  395 (475)
T PRK09181        327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATNANTI--THYLWG-S---L---KTLKRVIAELEKRYPNA  395 (475)
T ss_pred             CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEecCcEE--EEEEcC-C---h---HHHHHHHHHHHHhcCCc
Confidence            35677888654   7899999999999999999983  44432222  355522 1   1   2345555556544421 


Q ss_pred             c--cCCceEEEEEeCC--CcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEE
Q 013090          333 R--VSEGLKLELCTTD--RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYV  383 (449)
Q Consensus       333 r--~~~~~~l~v~~~D--rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v  383 (449)
                      .  ...-..|.+++..  +||+.+++..+|.+.||||....   .|..... .|.|
T Consensus       396 ~i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~---qg~se~~Is~vV  448 (475)
T PRK09181        396 EVTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH---QSMRQVNMQFVV  448 (475)
T ss_pred             eEEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE---ecCCcceEEEEE
Confidence            1  1334778888754  89999999999999999998766   4444444 3555

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.72  E-value=2.1  Score=47.42  Aligned_cols=74  Identities=23%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             EEEecCC-CCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          249 VNVVNCY-DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       249 V~v~~~~-~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      |.+++.. ..-...|.|.+.||+|||.+++++|++.+.||......+.++......+-..     +.+-..+..|...|.
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-----v~n~~~L~~i~~~l~  690 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-----VKNLNHLGRVLARLK  690 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-----ECcHHHHHHHHHHHh
Confidence            3455543 2344689999999999999999999999999999998886443333333222     223234555555554

>PRK08210 aspartate kinase I; Reviewed

Probab=88.65  E-value=7.7  Score=40.31  Aligned_cols=96  Identities=13%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             ceeEEEEEcCCC-cchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc---
Q 013090          258 DYSVVTITSKDR-PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR---  333 (449)
Q Consensus       258 ~~tvv~V~~~Dr-pgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r---  333 (449)
                      +...|+|.+.+. ||.++++...|.+.|++|.....+.  ..  =.|.+..         ...+.+.+.|.+. ...   
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~~  335 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPSV  335 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEEE
Confidence            445777776665 9999999999999999999874432  22  1355521         1233444444431 111   


Q ss_pred             cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEE
Q 013090          334 VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTR  367 (449)
Q Consensus       334 ~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~  367 (449)
                      ...-..+.|.+.   ++||+++++..+|.+.|++|..
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            123467778875   8999999999999999999974

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=88.59  E-value=3.1  Score=32.27  Aligned_cols=47  Identities=11%  Similarity=0.114  Sum_probs=37.2

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD  173 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~  173 (449)
                      .|.+..+|+||-|+++-..|+.+|+|+..-+..... ....=.|||.-
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            355566899999999999999999999988876643 34556777774

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.52  E-value=0.85  Score=47.67  Aligned_cols=50  Identities=14%  Similarity=0.268  Sum_probs=44.6

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                      ....|.+.-.|+||.+++|+.+|+++|+||...+.++.++.+..+|.+..
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~  386 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA  386 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence            56778889999999999999999999999999999998888888877654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.14  E-value=1.4  Score=47.60  Aligned_cols=63  Identities=16%  Similarity=0.372  Sum_probs=45.9

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ  401 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~  401 (449)
                      ++.|-+.-.|+||.+..|+.+|.+++|||...++........-+..+.  .+.+++.+.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~--~D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLS--VDDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEE--CCCCCCHHHHHHHhc
Confidence            455656678999999999999999999999999876533333333332  245777876677775

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.01  E-value=1.8  Score=44.25  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  384 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~  384 (449)
                      -+.|.|.-+||||-|+.|+..+.+.||||.+.+|.-.-+....+..++
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            499999999999999999999999999999999865545555566664

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=87.94  E-value=2.2  Score=33.35  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=37.3

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEee
Q 013090          128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD  173 (449)
Q Consensus       128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~  173 (449)
                      +.+..+|+||-|+++-..|+.+|+|+..-+.... +....=.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            4555689999999999999999999998887763 444567788874

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=87.76  E-value=12  Score=39.30  Aligned_cols=101  Identities=12%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             ceeEEEEEcCC-C-cchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 013090          258 DYSVVTITSKD-R-PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--  333 (449)
Q Consensus       258 ~~tvv~V~~~D-r-pgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r--  333 (449)
                      +...|+|.+.+ . +|++.++...|.+.|++|......+.....  .|.| +.        ...+...+.|.......  
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sI--s~~I-~~--------~~~~~a~~~L~~~~~~~~~  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSI--SFTV-DK--------EDADQAKTLLKSELNLSAL  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceE--EEEE-EH--------HHHHHHHHHHHHHHHhcCc
Confidence            45667777654 3 799999999999999999876533322111  2444 22        11222222232211111  


Q ss_pred             -----cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEE
Q 013090          334 -----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  369 (449)
Q Consensus       334 -----~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~  369 (449)
                           ...-..+.+.+.   ++||+++++..+|.+.||+|....
T Consensus       370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                 123467888653   789999999999999999997765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06382 threonine dehydratase; Provisional

Probab=87.32  E-value=3.1  Score=43.43  Aligned_cols=51  Identities=20%  Similarity=0.246  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhccCCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEe
Q 013090          320 ERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA  371 (449)
Q Consensus       320 ~~l~~~L~~~l~~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~  371 (449)
                      ..+.+.+...+. ...+.+.+.|.-.|+||-|.+|+.+|.++|+||.+....
T Consensus       314 ~~~~~~~~~~~~-~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        314 LLMSKIIYKELE-NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             HHHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            345555555553 223568899999999999999999999999999988754

>PLN02317 arogenate dehydratase

Probab=87.09  E-value=2.6  Score=43.50  Aligned_cols=56  Identities=16%  Similarity=0.259  Sum_probs=43.4

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc---------------eeeEEEEEcCCCCCCCHH
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK---------------AVNTFYVGGASGYPVDAK  394 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~---------------~~d~F~v~~~~g~p~~~~  394 (449)
                      +.|-+.-.|+||-|+++-.+|+.+|||+++.+......+               .+=+||| |..|..-++.
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d~~  354 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMADPR  354 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCCHH
Confidence            566666789999999999999999999999997655333               3448888 5667555555

>PRK14630 hypothetical protein; Provisional

Probab=87.07  E-value=5.9  Score=35.20  Aligned_cols=89  Identities=11%  Similarity=0.037  Sum_probs=60.1

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC-
Q 013090          268 DRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT-  345 (449)
Q Consensus       268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~-  345 (449)
                      |.-.+-..+..++..+|+.+.+......+ +..+- .||...+|-.+   +..+.+.+.+...|....+..|.|||+++ 
T Consensus         6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lr-V~Id~~~gV~i---dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG   81 (143)
T PRK14630          6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQ-IVLYKKDSFGV---DTLCDLHKMILLILEAVLKYNFSLEISTPG   81 (143)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEE-EEEECCCCCCH---HHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence            44456667788899999999999988875 45554 44533344223   46788888888777765678899999974 


Q ss_pred             -CCcChHHHHHHHHHhCC
Q 013090          346 -DRVGLLSNVTRIFRENS  362 (449)
Q Consensus       346 -DrpGLL~~it~~l~~~~  362 (449)
                       |||  |.....+-+-.|
T Consensus        82 ldRp--L~~~~df~r~~G   97 (143)
T PRK14630         82 INRK--IKSDREFKIFEG   97 (143)
T ss_pred             CCCc--CCCHHHHHHhCC
Confidence             666  333334433333

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=86.81  E-value=1.5  Score=47.35  Aligned_cols=63  Identities=14%  Similarity=0.359  Sum_probs=45.9

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ  401 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~  401 (449)
                      ++.|-+.-.|+||.+..|+.+|.+++|||...++........-+..+.  ...+++.+.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~--~D~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLS--LDQPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEE--cCCCCCHHHHHHHhc
Confidence            455656668999999999999999999999999875533333333332  244778877777775

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=86.08  E-value=3.2  Score=43.57  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=46.8

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      .|.|.+...|+||.|++|+.+|.++++||.+..-....+...+++++++..    +...+.++.++|..
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence            588999999999999999999999999999886543323345677776432    33444555555554

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=86.07  E-value=5.9  Score=31.56  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090          261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK  327 (449)
Q Consensus       261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  327 (449)
                      ++.|.-+||||=|..++..|.  +.||.+..-...+ +.+. ..++....+.    .+..+.+.+.|.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~-v~i~ie~~~~----~~~~~~i~~~L~   63 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAH-IFVGVSVANG----AEELAELLEDLK   63 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeE-EEEEEEeCCc----HHHHHHHHHHHH
Confidence            578889999999999999999  5666654443332 3332 2333232220    235566666665

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=85.85  E-value=15  Score=39.00  Aligned_cols=105  Identities=12%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             CceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090          257 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  332 (449)
Q Consensus       257 ~~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-  332 (449)
                      ++.+.|++.+   .++||+++++...|++.|++|..-  . .+..- =.|+|...+   +.. ..+..+.+.|...+.. 
T Consensus       306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~~s-is~~v~~~~---~~~-a~~~~l~~el~~~~~~~  377 (454)
T PRK09034        306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGIDD-LSIIIRERQ---LTP-KKEDEILAEIKQELNPD  377 (454)
T ss_pred             CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCCcE-EEEEEeHHH---hhH-HHHHHHHHHHHHhhCCc
Confidence            3456777774   678999999999999999999885  2 22222 236663211   110 0113333334332210 


Q ss_pred             c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEE
Q 013090          333 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  369 (449)
Q Consensus       333 r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~  369 (449)
                      .   ...-..+.+.+.   ++||+++++..+|.++||+|....
T Consensus       378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIs  420 (454)
T PRK09034        378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMIN  420 (454)
T ss_pred             eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence            0   123467888763   789999999999999999998775

>PRK06545 prephenate dehydrogenase; Validated

Probab=85.55  E-value=2.6  Score=43.16  Aligned_cols=51  Identities=14%  Similarity=0.273  Sum_probs=41.9

Q ss_pred             CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090          122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT  172 (449)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~  172 (449)
                      -..++.|.|.-+||||-+++|+..|...|+||.+-+|.-.-+...-++.++
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            346788999999999999999999999999999999976444444455554

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=85.12  E-value=1.1  Score=43.05  Aligned_cols=66  Identities=11%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcC-CCCCCCHHHHHHHHHHhcc
Q 013090          335 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA-SGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       335 ~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~-~g~p~~~~~~~~lr~~l~~  405 (449)
                      +++.++.+--.|-||+|+.|+.+|+.+|.||.++-+.-.  +.++.|..|-. .|   .+..+++.+++|+.
T Consensus        75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t--evk~LsrmTIVl~G---td~VveQa~rQied  141 (309)
T KOG2663|consen   75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT--EVKALSRMTIVLQG---TDGVVEQARRQIED  141 (309)
T ss_pred             ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeech--hhhhhhhceEEEec---cHHHHHHHHHHHHH
Confidence            356889999999999999999999999999999986533  34555522211 23   33445777777776

>PRK14646 hypothetical protein; Provisional

Probab=84.74  E-value=11  Score=34.04  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=61.2

Q ss_pred             chHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh--hccCCceEEEEEeC--
Q 013090          271 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE--RRVSEGLKLELCTT--  345 (449)
Q Consensus       271 gLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~--~r~~~~~~l~v~~~--  345 (449)
                      .+...+...+.++|+.+.+..+...+ ...+- .||...+|..++ -+..+.+.+.+.+.|.  ...+..|.|||+++  
T Consensus         8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~Lr-V~IDk~~g~gVt-ldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl   85 (155)
T PRK14646          8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIK-IIIKKTNGDDIS-LDDCALFNTPASEEIENSNLLNCSYVLEISSQGV   85 (155)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcc-HHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence            45667788899999999999999885 45554 445333343343 2567888888888886  34577899999975  


Q ss_pred             CCcChHHHHHHHHHhCCC
Q 013090          346 DRVGLLSNVTRIFRENSL  363 (449)
Q Consensus       346 DrpGLL~~it~~l~~~~i  363 (449)
                      |||  |..--.+-+-.|=
T Consensus        86 dRp--L~~~~df~r~~G~  101 (155)
T PRK14646         86 SDE--LTSERDFKTFKGF  101 (155)
T ss_pred             CCc--CCCHHHHHHhCCC
Confidence            665  5545555555454

>PRK14634 hypothetical protein; Provisional

Probab=84.72  E-value=10  Score=34.07  Aligned_cols=89  Identities=20%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             cchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC-
Q 013090          270 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT-  345 (449)
Q Consensus       270 pgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~-  345 (449)
                      ..+-..+..++.++|+.+.+..+...| +..+- .||...+|..++ -+..+.+.+.+.+.|..  ..+..|.|||+++ 
T Consensus         7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lr-V~ID~~~g~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   84 (155)
T PRK14634          7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQ-VQIRRSSGSDVS-LDDCAGFSGPMGEALEASQLLTEAYVLEISSPG   84 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEE-EEEECCCCCccc-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence            455666777889999999999998885 45554 445444564343 35778888888888863  3567899999974 


Q ss_pred             -CCcChHHHHHHHHHhCC
Q 013090          346 -DRVGLLSNVTRIFRENS  362 (449)
Q Consensus       346 -DrpGLL~~it~~l~~~~  362 (449)
                       |||  |..--.+-+-.|
T Consensus        85 ldRp--L~~~~~f~r~~G  100 (155)
T PRK14634         85 IGDQ--LSSDRDFQTFRG  100 (155)
T ss_pred             CCCc--CCCHHHHHHhCC
Confidence             676  433334444434

>PLN02551 aspartokinase

Probab=84.61  E-value=34  Score=37.00  Aligned_cols=113  Identities=19%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090           36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS  112 (449)
Q Consensus        36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~  112 (449)
                      +.+.|+|.+.   +.+|.++++...|.++|++|.--  .+..  .--.|.|...+-..  .+...+.+.+.+.+..   .
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~---~  435 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWS--RELIQQELDHLVEELE---K  435 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhh---c
Confidence            4567777655   68999999999999999999854  2322  11246664432111  0001111211111110   0


Q ss_pred             CcceeeccCCCceEEEEEEeC--CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090          113 SMRSVGVKQSMDHTAIELTGS--DRPGLLSEVSAVLTHLKCNVVSAEVWT  160 (449)
Q Consensus       113 ~~~~V~~~~~~~~t~i~v~~~--DrpGLl~~I~~~l~~~g~~I~~A~i~T  160 (449)
                      . ..+.  ...+...|.|+|.  ..||+++++..+|++.|+||..-...+
T Consensus       436 ~-~~V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        436 I-AVVN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             C-CeEE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence            0 1122  2345667777765  689999999999999999998765444

>PRK09181 aspartate kinase; Validated

Probab=84.11  E-value=11  Score=40.22  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090           36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS  112 (449)
Q Consensus        36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~  112 (449)
                      +.+.|+|.+.   +.+|+.+++...|.++|++|.  .+.+..  .--.|.|.+.  .     ...+.+.+.|.....   
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~---  393 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYP---  393 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcC---
Confidence            5566777543   689999999999999999997  333322  1224555332  1     122333333432210   


Q ss_pred             CcceeeccCCCceEEEEEEeCC--ccchHHHHHHHHHhCCCeEEEEEEE
Q 013090          113 SMRSVGVKQSMDHTAIELTGSD--RPGLLSEVSAVLTHLKCNVVSAEVW  159 (449)
Q Consensus       113 ~~~~V~~~~~~~~t~i~v~~~D--rpGLl~~I~~~l~~~g~~I~~A~i~  159 (449)
                       ...+.  . .+...|.++|..  +||+.+++..+|++.|+||..-.-.
T Consensus       394 -~~~i~--~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        394 -NAEVT--V-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             -CceEE--E-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence             01122  2 456788888765  8999999999999999999765543

>PRK11899 prephenate dehydratase; Provisional

Probab=84.06  E-value=6.5  Score=38.93  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=42.2

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCC
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGG  178 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~  178 (449)
                      .|.|-+..+|+||.|+++-.+|+.+|+|+.+-+..-. ++-..=+|||.-  .|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence            5777777799999999999999999999999888754 444566888875  354

>PRK14636 hypothetical protein; Provisional

Probab=83.60  E-value=10  Score=34.90  Aligned_cols=79  Identities=11%  Similarity=0.088  Sum_probs=55.9

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh--hccCCceEEEEEe
Q 013090          268 DRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE--RRVSEGLKLELCT  344 (449)
Q Consensus       268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~--~r~~~~~~l~v~~  344 (449)
                      |.+.+...+..++.++|+.+.+..+...+ ...+-+| |...+|..++ -...+.+.+.|...|.  ...+..|.|||++
T Consensus         3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~-ID~~~~ggV~-lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSS   80 (176)
T PRK14636          3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIM-AERPDTRQLV-IEDCAALSRRLSDVFDELDPIEDAYRLEVSS   80 (176)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEE-EECCCCCCcC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeC
Confidence            34456667788899999999999988875 4555444 5333333343 2577888888888886  2356789999997


Q ss_pred             C--CCc
Q 013090          345 T--DRV  348 (449)
Q Consensus       345 ~--Drp  348 (449)
                      +  |||
T Consensus        81 PGldRp   86 (176)
T PRK14636         81 PGIDRP   86 (176)
T ss_pred             CCCCCC
Confidence            5  666

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=83.34  E-value=40  Score=35.76  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090           35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA  111 (449)
Q Consensus        35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~  111 (449)
                      .+.+.|+|...   .++|.++++.+.|.++|+||.--........  -.|.|...+.     +...+.+++.......  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            34556666643   3459999999999999999974433322223  4677743221     1233444444433211  


Q ss_pred             CCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEE
Q 013090          112 SSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       112 ~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                          .+.  ...+.-.|.++|.   ..||..+++..+|++.++||....
T Consensus       376 ----~v~--~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         376 ----EVE--VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             ----eEE--eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence                121  2234556777765   468999999999999999999877

>PRK08198 threonine dehydratase; Provisional

Probab=83.26  E-value=7.6  Score=40.34  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090          122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW  159 (449)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~  159 (449)
                      ......+.|.-+|+||-|+++...++++|.||......
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            44566899999999999999999999999999988765

>PRK12483 threonine dehydratase; Reviewed

Probab=83.05  E-value=39  Score=36.53  Aligned_cols=128  Identities=13%  Similarity=0.120  Sum_probs=76.3

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc-c-c
Q 013090           35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC-F-A  111 (449)
Q Consensus        35 ~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~-~-~  111 (449)
                      +....+.|.-+||||-|.+++.+|...  ||.+.+-... .+. ..++...+-.+.    +..++.|.+.|.+..- . .
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR----HDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence            345678899999999999999999988  8876555432 233 334433332111    2233677777765432 0 0


Q ss_pred             CC---------cceeec-c-CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEE
Q 013090          112 SS---------MRSVGV-K-QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQ  170 (449)
Q Consensus       112 ~~---------~~~V~~-~-~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~  170 (449)
                      .+         |..|+= . ....--.+.|.-|.|||-|.+.+.+|... .||....=.-++.....+|.
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~v  484 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLA  484 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEE
Confidence            01         112221 1 12344578888999999999999999852 44544443334544444543

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=83.03  E-value=7.9  Score=39.85  Aligned_cols=67  Identities=22%  Similarity=0.245  Sum_probs=46.2

Q ss_pred             CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE---c--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW---T--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~---T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ......+.|.-+||||.|++++..++++|.||.+..-.   .  ..+.+.-.+.+...       +++..+.|.+.|.+
T Consensus       302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD  373 (380)
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            34455899999999999999999999999999887544   1  22444444554431       13555666666543

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=82.85  E-value=18  Score=41.31  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=71.3

Q ss_pred             CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090           35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA  111 (449)
Q Consensus        35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~  111 (449)
                      .+.+.|+|.+.   +++|.++++...|.++|++|.-....+.. . --.|.|.+.+.     +...+.|.+.+....   
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~-sIsf~V~~~d~-----~~av~~L~~~f~~el---  382 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-Y-SISFCVPQSDA-----AKAKRALEEEFALEL---  382 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-c-eEEEEEeHHHH-----HHHHHHHHHHHHHHh---
Confidence            35567778654   67999999999999999999755443322 1 12455643211     112333444332111   


Q ss_pred             CCccee-eccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEE
Q 013090          112 SSMRSV-GVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVW  159 (449)
Q Consensus       112 ~~~~~V-~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~  159 (449)
                       ....+ .+....+...|.+.|.   ++||+++++..+|.+.|+||..-.-.
T Consensus       383 -~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg  433 (819)
T PRK09436        383 -KEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG  433 (819)
T ss_pred             -ccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence             00011 1122345778888886   68999999999999999999866433

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=82.62  E-value=6.8  Score=38.67  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD  173 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~  173 (449)
                      ..|.|-+..+|+||-|+++-.+|+.+|+|...-+..-.. +-..=.|||.-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~  243 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI  243 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence            478888888899999999999999999999988877644 44556777764

>PRK09084 aspartate kinase III; Validated

Probab=82.60  E-value=17  Score=38.47  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=62.6

Q ss_pred             CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090           36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS  112 (449)
Q Consensus        36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~  112 (449)
                      +...|+|.+.   +.+|.++++..+|.++|++|.--.  +..  .--.|.|.+.+-..-......+.+.+.|...     
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~-----  375 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQL-----  375 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcC-----
Confidence            4557777654   688999999999999999998543  211  1224666443211100011223343344321     


Q ss_pred             CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCC
Q 013090          113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKC  151 (449)
Q Consensus       113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~  151 (449)
                        ..+.  -..+...|.+.|.   ++||+++++..+|++.++
T Consensus       376 --~~i~--~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        376 --CRVE--VEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             --CeEE--EECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence              1122  2345678888886   689999999999987533

>PRK08818 prephenate dehydrogenase; Provisional

Probab=82.07  E-value=3.2  Score=42.79  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=38.2

Q ss_pred             ceEEEEEEeC-CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          124 DHTAIELTGS-DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       124 ~~t~i~v~~~-DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                      ..+.|.+.-+ |+||-|++|..+|+.+|+||.+-++ .+.....-.|+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            4667777776 9999999999999999999999999 33322333388874

>TIGR00657 asp_kinases aspartate kinase

Probab=81.58  E-value=16  Score=38.48  Aligned_cols=108  Identities=24%  Similarity=0.277  Sum_probs=64.6

Q ss_pred             CeEEEEEEeCCC--cchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090           36 NATVIRVDSANK--HGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS  113 (449)
Q Consensus        36 ~~t~V~V~~~Dr--~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~  113 (449)
                      +...|+|.+.+-  +|.++++...|.++|++|.-....+.. .. -.|.|...+         .+...+.|...... ..
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~---------~~~a~~~L~~~~~~-~~  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKED---------ADQAKTLLKSELNL-SA  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHH---------HHHHHHHHHHHHHh-cC
Confidence            344566654332  799999999999999999865433322 11 245554321         11112222111000 00


Q ss_pred             cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEE
Q 013090          114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                      -..+  ....+...|++.|.   +.||++++|..+|++.|+||....
T Consensus       369 ~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 LSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             cceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            0111  23345677888764   789999999999999999997765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK11898 prephenate dehydratase; Provisional

Probab=81.48  E-value=6.1  Score=39.18  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=58.9

Q ss_pred             HhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC-CCcChHHHHHHHH
Q 013090          281 TDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT-DRVGLLSNVTRIF  358 (449)
Q Consensus       281 ~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~-DrpGLL~~it~~l  358 (449)
                      ...|+.|..-.|... +++.  .|+|......+...                ......+.|-+... |+||-|+++-.+|
T Consensus       157 ~~ygL~il~~~I~d~~~N~T--RF~vi~~~~~~~~~----------------~~~~~ktslif~l~~~~pGsL~~~L~~F  218 (283)
T PRK11898        157 ELYGLEILAEDIQDYPNNRT--RFWLLGRKKPPPPL----------------RTGGDKTSLVLTLPNNLPGALYKALSEF  218 (283)
T ss_pred             HHcCCcEehhcCCCCCccce--EEEEEEcCcccCCC----------------CCCCCeEEEEEEeCCCCccHHHHHHHHH
Confidence            345777777666554 3444  47776543220000                00111345555554 4699999999999


Q ss_pred             HhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHH
Q 013090          359 RENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAK  394 (449)
Q Consensus       359 ~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~  394 (449)
                      +++|||+++.+...... ..+=.||| |..|..-++.
T Consensus       219 ~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~~~~~  254 (283)
T PRK11898        219 AWRGINLTRIESRPTKTGLGTYFFFI-DVEGHIDDVL  254 (283)
T ss_pred             HHCCCCeeeEecccCCCCCccEEEEE-EEEccCCCHH
Confidence            99999999999776544 45558888 5667544434

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=81.33  E-value=5.4  Score=41.82  Aligned_cols=53  Identities=15%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-CceeeEEEEEcCCCCC
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYP  390 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~~~~d~F~v~~~~g~p  390 (449)
                      .+.|-+...|+||-|++|-.+|+++|||+.+.+..... ...+=.|+|. ..|..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~   69 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS   69 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc
Confidence            35677777999999999999999999999999976543 3355588884 55543

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK14645 hypothetical protein; Provisional

Probab=81.30  E-value=20  Score=32.18  Aligned_cols=89  Identities=22%  Similarity=0.289  Sum_probs=61.3

Q ss_pred             cchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC-
Q 013090          270 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT-  345 (449)
Q Consensus       270 pgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~-  345 (449)
                      ..+-..+..++..+|+.+.+..+...+ ...+-+ ||...+|..++ -+..+.+.+.+.+.|..  ..+..|.|||+++ 
T Consensus         9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV-~ID~~~~~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   86 (154)
T PRK14645          9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLV-RIDRKDEQPVT-VEDLERASRALEAELDRLDPIEGEYRLEVESPG   86 (154)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEE-EEECCCCCCcC-HHHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence            346667788899999999999998875 455544 45323344453 35778888888888863  2467899999974 


Q ss_pred             -CCcChHHHHHHHHHhCC
Q 013090          346 -DRVGLLSNVTRIFRENS  362 (449)
Q Consensus       346 -DrpGLL~~it~~l~~~~  362 (449)
                       |||  |...-.+-+-.|
T Consensus        87 ldRp--L~~~~df~r~~G  102 (154)
T PRK14645         87 PKRP--LFTARHFERFAG  102 (154)
T ss_pred             CCCC--CCCHHHHHHhCC
Confidence             666  444555555555

>PRK06349 homoserine dehydrogenase; Provisional

Probab=80.97  E-value=7.9  Score=40.66  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=42.1

Q ss_pred             CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                      ....+-|.+...|+||.|++|+.+|.+++++|.+.......+....++.+++
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            3445788999999999999999999999999998766554445567777776

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=80.62  E-value=21  Score=32.41  Aligned_cols=108  Identities=14%  Similarity=0.206  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcc
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS-SDG-CWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMR  115 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~  115 (449)
                      ..+.+.-.|.||.|.++++.|+..|+||.+-.+. |++ +..--++.+ ..      ++...++|.+.|......   .+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~g------~~~~~EQi~kQL~kLidV---~k   74 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-SG------DEQVLEQIIKQLNKLIDV---LK   74 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-cC------CcchHHHHHHHHHhhccc---ee
Confidence            4677888999999999999999999999988886 643 433333333 22      123456666666654321   01


Q ss_pred             eeecc----CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEE
Q 013090          116 SVGVK----QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       116 ~V~~~----~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                      .++..    -..+--.+.+.++--.  ..++.+...-++.+|.+..
T Consensus        75 V~d~~~~~~veRel~LiKv~~~~~~--R~ei~~~~~ifr~~vvDvs  118 (163)
T COG0440          75 VLDLTSEPHVERELALIKVSAEGSE--RGEIARITEIFRASVVDVS  118 (163)
T ss_pred             EEEcCCcchhheeeEEEEEecCccc--hHHHHHHHHHhCceEEecC
Confidence            11111    1112233444432221  5567777777777776554

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.48  E-value=3.7  Score=44.35  Aligned_cols=64  Identities=19%  Similarity=0.354  Sum_probs=46.8

Q ss_pred             CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 013090          122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKE  191 (449)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~  191 (449)
                      ..+...+-+.-.|+||.+..|+.+|.++++||...++..  .++.+.-++.+..     +++ ++.+++|++
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~-----~v~-~~~l~~i~~  514 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD-----PVP-EEVLEELRA  514 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC-----CCC-HHHHHHHhc
Confidence            345566667779999999999999999999999999886  4566666666543     243 455555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	449
1u8s_A	192	Glycine cleavage system transcriptional repressor,	1e-08
1u8s_A	192	Glycine cleavage system transcriptional repressor,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2nyi_A	195	Unknown protein; protein structure initiative, PSI	3e-06
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	4e-05

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 1/132 (0%)

Query: 39  VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILD 98
           VI     ++ GI  EVV+++T     +  + I+  G  F  +  ++    N    E  L 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 99  YIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEV 158
            + +                 +       + +   D+ GL  + +      +  + S   
Sbjct: 68  LLGQQHD-LITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSA 126

Query: 159 WTHNTRAAALMQ 170
            T +       Q
Sbjct: 127 QTISKDKLHSEQ 138

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 122 SM-DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 175
           S+  H  I   G+DRPG+ +EV  ++T   CN++ + +         LM ++   
Sbjct: 2   SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 58/413 (14%), Positives = 131/413 (31%), Gaps = 100/413 (24%)

Query: 11  SDDEYEKLIR---RMNPPRVVIDNEACKNATVIR--VDSANK--HGILLEVVQVLTDLNL 63
           S +E + +I     ++    +      K   +++  V+   +  +  L+  ++       
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 64  IVTKAYISSDGCWFMDV-----FNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRS-- 116
           ++T+ YI      + D      +NV+               +R+ L         +R   
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLK------LRQAL-------LELRPAK 151

Query: 117 -VGVKQSMDHTAIELTGSDRPGLLSEV---SAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172
            V +   +        GS +  +  +V     V   +   +     W         + + 
Sbjct: 152 NVLI-DGV-------LGSGKTWVALDVCLSYKVQCKMDFKIF----W---------LNL- 189

Query: 173 DEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYE 232
                   + PE +  + + L   +  +  S    +   +   H+ +   + +   + YE
Sbjct: 190 -----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 233 RTGTDDDSL---DEKQRPNVNVVNCYD---KDYSVVTITSKDRPKLVFDTVCTLTDMQYV 286
                   L      Q  N    N ++   K    + +T++   K V D +   T     
Sbjct: 245 N------CLLVLLNVQ--NAKAWNAFNLSCK----ILLTTRF--KQVTDFLSAATTTHIS 290

Query: 287 VFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQC--LKAAIERRVSEGLKLELCT 344
           + H ++     E  +   ++++D    +       V+     + +I   ++E ++  L T
Sbjct: 291 LDHHSMTLTPDEV-KSLLLKYLD---CRPQDLPREVLTTNPRRLSI---IAESIRDGLAT 343

Query: 345 TDRVG--LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKI 395
            D         +T I  E+SL V       K    ++ F        P  A I
Sbjct: 344 WDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVF--------PPSAHI 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 37/318 (11%), Positives = 91/318 (28%), Gaps = 76/318 (23%)

Query: 187 SVIKELLCNVLKGSNKSGLAKTEVSQ--DVTHTERRLHQMMFADRDYERTGTD---DDSL 241
           + +    C  ++   KS L+K E+              ++ +     +        ++ L
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 242 D------------EKQRPNVNV---VNCYDKDYSVVTITSKD---RPKLVF---DTVCTL 280
                        E+++P++     +   D+ Y+   + +K    R +        +  L
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 281 TDMQYVVFH----------AN--IDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 328
              + V+            A     +   +   ++ I  ++     S      ++Q L  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 329 AIERRVSEGLKLELCTTDRVGLLSN-VTRIFRE----NSLTVTRAEVATKSGKAVNTFYV 383
            I+   +           R+  +   + R+ +     N L V    V     KA N F +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNA--KAWNAFNL 264

Query: 384 GGASGYPV-----DAKIIDSI-------------------RQSIGQTILKVKGNPEDL-K 418
                  +       ++ D +                    +     +  +   P+DL +
Sbjct: 265 SC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 419 SASQDSPTRF-LFGGLFK 435
                +P R  +     +
Sbjct: 321 EVLTTNPRRLSIIAESIR 338

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 25/123 (20%), Positives = 49/123 (39%)

Query: 39  VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILD 98
           V+ V  +++ GI+ +    L +++  V  + ++  G  F  +  V+    +    +  L+
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALE 66

Query: 99  YIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEV 158
                       ASS+    V        + + G D  G++  V+AVL     N+V  E 
Sbjct: 67  SALPGFQISTRRASSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELET 126

Query: 159 WTH 161
            T 
Sbjct: 127 ETL 129

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 8/68 (11%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
             I + G D+ G+ ++++ V++    N+ +  +   +      + +        + + ++
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 186 LS-VIKEL 192
           L+ ++ +L
Sbjct: 59  LTTLMDKL 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	449
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.73
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.69
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.63
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.75
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.72
2f06_A	144	Conserved hypothetical protein; structural genomic	98.54
2f06_A	144	Conserved hypothetical protein; structural genomic	98.26
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.11
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.91
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	97.9
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.74
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.73
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.48
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.28
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.27
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.26
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.24
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.17
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.14
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.12
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.1
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.07
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.01
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.94
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.81
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.79
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.73
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.73
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.71
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.69
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.47
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.38
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.28
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.2
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.15
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.11
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.89
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.82
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.78
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.3
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.12
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.72
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.65
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	94.37
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.34
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.17
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.1
3luy_A	329	Probable chorismate mutase; structural genomics, A	93.74
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.46
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.87
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	92.48
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.77
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	91.64
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	89.94
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.66
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.45
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	88.27
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.76
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	83.74
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	83.36
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	83.06
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	80.08
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	80.01

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=5e-18  Score=157.49  Aligned_cols=141  Identities=15%  Similarity=0.182  Sum_probs=109.6

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh----
Q 013090          258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----  332 (449)
Q Consensus       258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~----  332 (449)
                      ..++|+|+|+|||||++.++.+|+++|+||.+|++.+. |++++ .|.+... +  .....+++.|++.|...+..    
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~-~--~~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLN-A--KDGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEES-S--SSSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEec-C--ccchhHHHHHHHHHHHHHHhcCCe
Confidence            34799999999999999999999999999999999988 55666 6777533 2  12223567777777654421    


Q ss_pred             --------c-cCCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC--CceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090          333 --------R-VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQ  401 (449)
Q Consensus       333 --------r-~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g--~~~~d~F~v~~~~g~p~~~~~~~~lr~  401 (449)
                              . ....+.|+|.|+|||||+++||++|.++|+||..+++.|.+  ++++++|++....+.|- ... +.|++
T Consensus        80 ~~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-~~~-~~l~~  157 (195)
T 2nyi_A           80 SSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-PLY-QEVVT  157 (195)
T ss_dssp             CCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-GGH-HHHHH
T ss_pred             EEEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-Ccc-HHHHH
Confidence                    0 12358999999999999999999999999999999999998  78899999987766552 223 56666


Q ss_pred             Hhc
Q 013090          402 SIG  404 (449)
Q Consensus       402 ~l~  404 (449)
                      +|.
T Consensus       158 ~l~  160 (195)
T 2nyi_A          158 ALS  160 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.73  E-value=3.7e-17  Score=151.56  Aligned_cols=153  Identities=17%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc-ccC---
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC-FAS---  112 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~-~~~---  112 (449)
                      .++|+|+|+|||||+++++++|+++|+||.+|++++..|.+.-.|.|..+..   ..+...+.|++.|..... +..   
T Consensus         5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~~   81 (195)
T 2nyi_A            5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRASS   81 (195)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECCC
T ss_pred             EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeEE
Confidence            4689999999999999999999999999999999975554444888865421   223356788888875532 100   


Q ss_pred             CcceeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHH
Q 013090          113 SMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIK  190 (449)
Q Consensus       113 ~~~~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~  190 (449)
                      .+.... ......++|+|.|+|||||+++|+++|+++|+||..++..|.+  ++..+.|++... -+.+  ++.. +.|+
T Consensus        82 ~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l~  156 (195)
T 2nyi_A           82 VAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEVV  156 (195)
T ss_dssp             C----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHHH
T ss_pred             EEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHHH
Confidence            000001 2345678999999999999999999999999999999999977  667788888763 2222  2344 7788


Q ss_pred             HHhcccc
Q 013090          191 ELLCNVL  197 (449)
Q Consensus       191 ~~L~~~L  197 (449)
                      +.|..+.
T Consensus       157 ~~l~~~a  163 (195)
T 2nyi_A          157 TALSRVE  163 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776544

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.69  E-value=4.7e-16  Score=143.58  Aligned_cols=138  Identities=17%  Similarity=0.220  Sum_probs=105.3

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh------
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER------  332 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~------  332 (449)
                      ..+|+|+|+|||||+++++.+|+++|+||.++++.+.++...-.|.+...       ....++|++.|.....+      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence            46899999999999999999999999999999999886544446777432       13567888888765531      


Q ss_pred             --cc--------CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC----ceeeEEEEEcCCCCCCCHHHHHH
Q 013090          333 --RV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG----KAVNTFYVGGASGYPVDAKIIDS  398 (449)
Q Consensus       333 --r~--------~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~----~~~d~F~v~~~~g~p~~~~~~~~  398 (449)
                        +.        ...++|++.+.||||++++|+++|.++|+||.+++..|.++    ++++.|++....+.|-+.. .+.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~-~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCN-LMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSC-HHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCC-HHH
Confidence              11        13589999999999999999999999999999999999985    6899999987655442222 355


Q ss_pred             HHHHhc
Q 013090          399 IRQSIG  404 (449)
Q Consensus       399 lr~~l~  404 (449)
                      |+++|.
T Consensus       158 l~~~l~  163 (192)
T 1u8s_A          158 LQEEFD  163 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.63  E-value=2.8e-15  Score=138.42  Aligned_cols=151  Identities=13%  Similarity=0.118  Sum_probs=106.6

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc-ccCC-c
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC-FASS-M  114 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~-~~~~-~  114 (449)
                      ..+|+|+|+||||++++++++|+++|+||.++++++..|.+.-.|.|..+.       ...+.|++.|..... .... .
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEEE
Confidence            468999999999999999999999999999999998767666688886431       244566666553321 0000 0


Q ss_pred             -cee---eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC----ceEEEEEEeeCCCCCCCCCHHHH
Q 013090          115 -RSV---GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT----RAAALMQVTDEETGGAISDPERL  186 (449)
Q Consensus       115 -~~V---~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~----~~~dvf~V~~~~~g~~i~~~~~~  186 (449)
                       +..   ........++|+|.|+||||++++|+.+|+++|+||.+++..|.+.    +..+.|+++.. -+.+  ++...
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~~  155 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCNL  155 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSCH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCCH
Confidence             000   0123446789999999999999999999999999999999999763    56788888763 1211  12235


Q ss_pred             HHHHHHhcccc
Q 013090          187 SVIKELLCNVL  197 (449)
Q Consensus       187 ~~l~~~L~~~L  197 (449)
                      +.|++.|..+.
T Consensus       156 ~~l~~~l~~~~  166 (192)
T 1u8s_A          156 MQLQEEFDALC  166 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            67777776543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.75  E-value=1.4e-07  Score=96.53  Aligned_cols=122  Identities=10%  Similarity=0.046  Sum_probs=86.9

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh------
Q 013090          258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE------  331 (449)
Q Consensus       258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~------  331 (449)
                      ...+|+|.|+|||||++.++..|+++|+||.+++..+.++++.-...+ +.++...    ..+.|++.|...-+      
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~-~~~~~~~----~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLV-CCPADVA----DGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEE-EECHHHH----TSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEE-EecCCcC----CHHHHHHHHHHHHHHcCeEE
Confidence            356899999999999999999999999999999999887655322223 2111100    12566666654321      


Q ss_pred             --hc------c--CCceEEEEEeCC-CcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090          332 --RR------V--SEGLKLELCTTD-RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  384 (449)
Q Consensus       332 --~r------~--~~~~~l~v~~~D-rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~  384 (449)
                        ++      .  ..++.+++.+.| +||++.+|+.++.++|+||..++.-+......=-|++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence              11      1  236899999999 99999999999999999999988665322222236664

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.72  E-value=1.4e-07  Score=96.59  Aligned_cols=132  Identities=11%  Similarity=0.000  Sum_probs=91.8

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc------
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC------  109 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~------  109 (449)
                      ...+|+|.|+||||+.+.++++|+++|+||.+...++.+|+|.-...+.-+... .+    .+.|++.|.....      
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~----~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-AD----GPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HT----SHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CC----HHHHHHHHHHHHHHcCeEE
Confidence            456899999999999999999999999999999999888887666666432211 01    1344444433211      


Q ss_pred             -ccCCcceeeccCCCceEEEEEEeCC-ccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          110 -FASSMRSVGVKQSMDHTAIELTGSD-RPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       110 -~~~~~~~V~~~~~~~~t~i~v~~~D-rpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                       ......... .....+..+++.+.| ++|++.+|+.+++++|+||...+.-+......--|+|..
T Consensus        86 ~~~~~~~~~~-~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A           86 SIERSDDVPI-IREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             EEEECSSSCS-SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEECCcccc-cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence             001100000 123467889999999 999999999999999999988887764333333366653

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.54  E-value=2.1e-06  Score=74.76  Aligned_cols=113  Identities=21%  Similarity=0.225  Sum_probs=75.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCccee
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSV  117 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V  117 (449)
                      .+++|..+|+||.++++++.|++.|+||..-.+....+..+-.|.+.        +.   +..++.|.... +   .  +
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~G-~---~--v   69 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDNH-F---A--V   69 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHTT-C---C--E
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHcC-C---e--E
Confidence            57899999999999999999999999999877653222112224331        22   22333343221 0   0  0


Q ss_pred             eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090          118 GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT  172 (449)
Q Consensus       118 ~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~  172 (449)
                           ....++.+..+|+||.+++++++|++.|+||.+...+..+++...+|.+.
T Consensus        70 -----~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~  119 (144)
T 2f06_A           70 -----NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS  119 (144)
T ss_dssp             -----EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred             -----eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC
Confidence                 01246777889999999999999999999998777653344555555443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.26  E-value=1.6e-05  Score=69.12  Aligned_cols=112  Identities=9%  Similarity=0.041  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLK  339 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~  339 (449)
                      ..++|..+|+||.+++++..|++.|+||..-.+....+...=.|.+        .+.   +..++.|++. .-.......
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--------~d~---~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--------SDP---DKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--------SCH---HHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--------CCH---HHHHHHHHHc-CCeEeeeeE
Confidence            4688889999999999999999999999997776443322111322        122   3334444421 111111234


Q ss_pred             EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEE
Q 013090          340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  383 (449)
Q Consensus       340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v  383 (449)
                      +-+.-.|+||.+++++++|.++|+||.+...+..+.++.=.|..
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            55566899999999999999999999887755323333334433

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.11  E-value=8e-06  Score=65.09  Aligned_cols=65  Identities=14%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ....|+|.|+||||++++|+++|+++|+||.+....+.++.+...+.+.-+  +.     ..++.|.+.|.+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHH
Confidence            457899999999999999999999999999999998877776666776542  21     234666676655

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.91  E-value=6.1e-05  Score=59.20  Aligned_cols=64  Identities=13%  Similarity=0.325  Sum_probs=49.5

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      .+.|.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+..+       +...++.+.+.|.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHhc
Confidence            56789999999999999999999999999999998866655555555531       24566666666544

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=97.90  E-value=8.5e-05  Score=59.00  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=44.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDE   86 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~   86 (449)
                      ...++|.++||||++++++++|+++|+||.+....+.++.+.-.+.+.-+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~   54 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   54 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence            46799999999999999999999999999999998877888777777543

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.74  E-value=0.018  Score=61.46  Aligned_cols=292  Identities=11%  Similarity=0.107  Sum_probs=161.7

Q ss_pred             EEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC---
Q 013090           39 VIRVD-SANKHGILLEVVQVLTDLNLIVTKAYIS-SDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS---  113 (449)
Q Consensus        39 ~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~---  113 (449)
                      .|++. .++.||.++++-+.|+++|++|.--..+ +.+|..--.|.|...+-     +...+.+ +.+...+...++   
T Consensus       272 ~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l-~~~~~el~~~~~~~~  345 (600)
T 3l76_A          272 KVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVT-SAIAPALRSYPEADQ  345 (600)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHH-HHHGGGGSSSTTCSS
T ss_pred             EEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHH-HHHHHHhhccccccC
Confidence            34443 4789999999999999999999533322 24566556677743211     1111122 222222100001   


Q ss_pred             cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHH
Q 013090          114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK  190 (449)
Q Consensus       114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~  190 (449)
                      -..+.  ...+...|.|+|.   .+||+.+++..+|++.|+||..-.  |.  ..--.|.|...          ..++..
T Consensus       346 ~~~v~--~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~~----------d~~~Av  409 (600)
T 3l76_A          346 EAEII--VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQR----------DADRAI  409 (600)
T ss_dssp             SSEEE--EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGG----------GHHHHH
T ss_pred             cceeE--ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcHH----------HHHHHH
Confidence            11222  2345778999987   689999999999999999997665  22  22344555531          112222


Q ss_pred             HHhcccccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEE-cCCC
Q 013090          191 ELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT-SKDR  269 (449)
Q Consensus       191 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~Dr  269 (449)
                      +.|++.+..+....   .          .+       +...+.          ..-.-|..+    ++.+.|.|. .+|+
T Consensus       410 ~aLh~~f~~~~t~~---~----------~~-------~~~~~~----------~~v~Gia~~----~~~a~i~i~~~~~~  455 (600)
T 3l76_A          410 AALSNAFGVTLSPP---K----------NQ-------TDTSHL----------PAVRGVALD----QDQAQIAIRHVPDR  455 (600)
T ss_dssp             HHHHHHTTCCBCCC---C----------CC-------CC---C----------CSCCEEEEE----CSEEEEEEEEEESS
T ss_pred             HHHHHhhcccCCCc---c----------cc-------cccccc----------CceEEEEee----CCEEEEEEecCCCC
Confidence            33333332211000   0          00       000000          011234443    344556554 5899


Q ss_pred             cchHHHHHHHHHhCCceEEEEEEEecC----C--eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhcc--------C
Q 013090          270 PKLVFDTVCTLTDMQYVVFHANIDAEG----P--EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV--------S  335 (449)
Q Consensus       270 pgLl~~i~~~L~~~gl~I~~A~i~t~g----~--~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~--------~  335 (449)
                      ||+.+++...|++.|+||.--..+...    +  ..-=.|.|..         ..++...+.|++... ..        +
T Consensus       456 ~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~~~-~~~~~~v~~~~  525 (600)
T 3l76_A          456 PGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPLIK-DWLDAAIVVNK  525 (600)
T ss_dssp             TTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHHTT-TSTTCEEEEEC
T ss_pred             ccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHHHH-hcCCceEEEeC
Confidence            999999999999999999654333221    2  1222355522         234444444444221 11        2


Q ss_pred             CceEEEEEe---CCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhc
Q 013090          336 EGLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIG  404 (449)
Q Consensus       336 ~~~~l~v~~---~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~  404 (449)
                      .-.++.+++   ..+||+.+++-++|.+.||||....  |-  ...=.+.|...+    ....+.+|.++|+
T Consensus       526 ~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tS--Ei~Is~vV~~~~----~~~Av~alh~~F~  589 (600)
T 3l76_A          526 AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TS--EIKISCVVPQDR----GVDALKAAHSAFN  589 (600)
T ss_dssp             CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--EC--SSEEEEEEEGGG----HHHHHHHHHHHTT
T ss_pred             CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cC--CceEEEEEeHHH----HHHHHHHHHHHhC
Confidence            247889987   4999999999999999999998766  21  123355553221    1223456666664

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.73  E-value=0.00014  Score=57.09  Aligned_cols=64  Identities=8%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      .+.|.+.+.||||+|++|+.+|.++|+||.++.+.+.++.+...|.+.-.     +...++++.++|.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            56789999999999999999999999999999998776545555555322     33445677777765

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.48  E-value=0.0015  Score=58.09  Aligned_cols=109  Identities=16%  Similarity=0.149  Sum_probs=73.7

Q ss_pred             CeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090           36 NATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYIS-SDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS  113 (449)
Q Consensus        36 ~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~  113 (449)
                      +.+.|+|. .+|+||.++++.++|+++|+||.--... +.+|...-.|.|...+.     +...+.|++ +...+..   
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~---   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGA---   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTC---
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCC---
Confidence            55788998 5999999999999999999999865543 23455555677743111     112222322 2211111   


Q ss_pred             cceeeccCCCceEEEEEEeCC---ccchHHHHHHHHHhCCCeEEEE
Q 013090          114 MRSVGVKQSMDHTAIELTGSD---RPGLLSEVSAVLTHLKCNVVSA  156 (449)
Q Consensus       114 ~~~V~~~~~~~~t~i~v~~~D---rpGLl~~I~~~l~~~g~~I~~A  156 (449)
                       ..+.  ...+...+.|.|.+   +||+++++..+|++.|+||..-
T Consensus        95 -~~i~--~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           95 -ASID--GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             -SEEE--EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             -ceEE--ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence             1122  23457889999988   9999999999999999999883

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.28  E-value=0.0062  Score=59.12  Aligned_cols=103  Identities=13%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE-----  331 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~-----  331 (449)
                      ..+++|.|+|||||++.++..|+++|+||.+++..+.  .+++.-...+ +..+...    ..++|++.|...-+     
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~~~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVF-NAAAKVI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EESSCCC----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEE-EcCCCCC----CHHHHHHHHHHHHHHcCCE
Confidence            3689999999999999999999999999999998754  4444322222 2222112    23566666653322     


Q ss_pred             ---hccCCceEEEEEeCCCcChHHHHHHHHHhCCCcEE
Q 013090          332 ---RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVT  366 (449)
Q Consensus       332 ---~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~  366 (449)
                         +...+..++-|-...+---|.++-...++-.++..
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  118 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMI  118 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeE
Confidence               11233445555555555577788777777766543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.27  E-value=0.0045  Score=60.48  Aligned_cols=50  Identities=22%  Similarity=0.344  Sum_probs=42.9

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEc
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNVTD   85 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V~~   85 (449)
                      ...++++.|+||||+.++|+++|+++|+||.+++.+++  .|+|.-...+.-
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~   72 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA   72 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec
Confidence            44689999999999999999999999999999999975  677766665643

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.26  E-value=0.009  Score=57.94  Aligned_cols=117  Identities=13%  Similarity=0.099  Sum_probs=69.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCc
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSM  114 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~  114 (449)
                      ..++++.|+||||+.++++++|+++|+||.+.+.++  ..|+|.-...+.-+++. .+    .+.|++.|......  -.
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~----~~~L~~~f~~la~~--~~   78 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-IP----LASLRTGFGVIAAK--FT   78 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-CC----HHHHHHHHHHHHHH--TT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-CC----HHHHHHHHHHHHHH--cC
Confidence            468999999999999999999999999999999985  46777666555433321 12    24555555432110  00


Q ss_pred             ceeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090          115 RSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT  160 (449)
Q Consensus       115 ~~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T  160 (449)
                      -.+.+........|-|...-+---|..|-.....-.+++.=+-+-+
T Consensus        79 m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           79 MGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             CEEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             CEEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            0111211122334444444444566777766666555544333333

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.24  E-value=0.0016  Score=57.87  Aligned_cols=103  Identities=11%  Similarity=0.196  Sum_probs=70.9

Q ss_pred             ceeEEEEEc-CCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 013090          258 DYSVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IER  332 (449)
Q Consensus       258 ~~tvv~V~~-~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~---l~~  332 (449)
                      +.+.|+|.+ +|+||.++++...|++.|+||..-..+.. ++...=.|+|..         ...++..+.|.+.   +..
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~---------~~~~~a~~~l~~~~~~l~~   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR---------GDYKQTLEILSERQDSIGA   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG---------GGHHHHHHHHHHSSTTTTC
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec---------hHHHHHHHHHHHHHHHcCC
Confidence            456788884 99999999999999999999998665433 333323466621         1123333444432   111


Q ss_pred             c----cCCceEEEEEeCC---CcChHHHHHHHHHhCCCcEEEEE
Q 013090          333 R----VSEGLKLELCTTD---RVGLLSNVTRIFRENSLTVTRAE  369 (449)
Q Consensus       333 r----~~~~~~l~v~~~D---rpGLL~~it~~l~~~~i~I~~a~  369 (449)
                      .    ...-..++|.+.+   +||+++++..+|.++||||....
T Consensus        95 ~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           95 ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence            0    1124789999986   99999999999999999999843

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.17  E-value=0.012  Score=57.10  Aligned_cols=49  Identities=14%  Similarity=0.102  Sum_probs=41.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEc
Q 013090           37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTD   85 (449)
Q Consensus        37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~   85 (449)
                      ..+++|.|+||||+.++++++|+++|+||.+.+.++  ..|+|.-...+.-
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~   58 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ   58 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec
Confidence            468999999999999999999999999999999986  4577655555543

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.14  E-value=0.0057  Score=59.47  Aligned_cols=37  Identities=16%  Similarity=0.068  Sum_probs=34.4

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE  295 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~  295 (449)
                      ..+++|.|+|||||++.++..|+++|+||.+++..+.
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d   46 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD   46 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec
Confidence            3689999999999999999999999999999999854

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.12  E-value=0.0066  Score=58.89  Aligned_cols=100  Identities=13%  Similarity=0.133  Sum_probs=62.3

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE-----  331 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~-----  331 (449)
                      ..+++|.|+|||||++.++..|+++|+||.+++..+.  .+++.-...+ +.++  .    ..++|++.|...-+     
T Consensus         7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~--~----~~~~L~~~f~~la~~~~m~   79 (287)
T 3nrb_A            7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV-EIPV--A----GVNDFNSAFGKVVEKYNAE   79 (287)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-ECCC---------CHHHHHHHHHHGGGTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE-EcCC--C----CHHHHHHHHHHHHHHcCCe
Confidence            4689999999999999999999999999999999754  4443211111 2211  1    12356666653322     


Q ss_pred             ---hccCCceEEEEEeCCCcChHHHHHHHHHhCCCcE
Q 013090          332 ---RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTV  365 (449)
Q Consensus       332 ---~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I  365 (449)
                         +...+..++-|-...+---|.++-...++-.++.
T Consensus        80 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~  116 (287)
T 3nrb_A           80 WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDM  116 (287)
T ss_dssp             EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCC
T ss_pred             eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCe
Confidence               1122334454444444456777777777766654

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.10  E-value=0.01  Score=57.54  Aligned_cols=37  Identities=11%  Similarity=-0.102  Sum_probs=34.4

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE  295 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~  295 (449)
                      ..+++|.|+|||||++.++..|+++|+||.+++..+.
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d   44 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD   44 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence            3689999999999999999999999999999998854

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.07  E-value=0.0084  Score=58.51  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH---Hh---
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IE---  331 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~---l~---  331 (449)
                      .+++|.|+|||||++.++..|+++|+||.++...+.  .+++.-...+ +..+...    ..++|++.|...   +.   
T Consensus        23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~-~~~~~~~----~~~~L~~~l~~la~~l~m~~   97 (302)
T 3o1l_A           23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEI-RADTLPF----DLDGFREAFTPIAEEFSMDW   97 (302)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEE-EGGGSSS----CHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEE-ecCCCCC----CHHHHHHHHHHHHHHhCCee
Confidence            589999999999999999999999999999999875  3444222222 2211111    235666666432   21   


Q ss_pred             --hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090          332 --RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT  364 (449)
Q Consensus       332 --~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~  364 (449)
                        +...+..++-|-+..+..-|.++-...++-.++
T Consensus        98 ~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~  132 (302)
T 3o1l_A           98 RITDSAQKKRVVLMASRESHCLADLLHRWHSDELD  132 (302)
T ss_dssp             EEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSC
T ss_pred             eecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCC
Confidence              111223334343333334566666666555443

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.01  E-value=0.018  Score=55.78  Aligned_cols=49  Identities=22%  Similarity=0.229  Sum_probs=41.4

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT   84 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~   84 (449)
                      ...++++.|+||||+.++|+++|+++|+||.+.+.++  ..|+|.-...+.
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   56 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVE   56 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEE
Confidence            3568999999999999999999999999999999985  467776555553

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.94  E-value=0.015  Score=56.43  Aligned_cols=49  Identities=14%  Similarity=0.125  Sum_probs=41.1

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT   84 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~   84 (449)
                      ...++++.|+||||+.++|+++|+++|+||.+.+.++  ..|+|.-...+.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   59 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFH   59 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEE
Confidence            3468999999999999999999999999999999986  457765554443

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.81  E-value=0.01  Score=53.28  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             CCeEEEEE-EeCCCcchHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc
Q 013090           35 KNATVIRV-DSANKHGILLEVVQVLTDLNLIVTKAYISSD---GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF  110 (449)
Q Consensus        35 ~~~t~V~V-~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~  110 (449)
                      .+.+.|+| ..+|+||.++++.+.|+++|+||.--...+.   ++..--.|.|...         ..+...+.|.+... 
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~-   82 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQV-   82 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTT-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHH-
Confidence            36678888 4799999999999999999999985554432   3322224777532         11223344443211 


Q ss_pred             cCCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEE
Q 013090          111 ASSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSA  156 (449)
Q Consensus       111 ~~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A  156 (449)
                      ......+.  ...+...|.|.|.   ++||.++++..+|++.|+||..-
T Consensus        83 ~~~~~~v~--~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           83 QGNWTNVL--YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             TTTCSEEE--EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             hcCCCeEE--EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            00011222  2345778888887   89999999999999999999884

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.79  E-value=0.0041  Score=55.26  Aligned_cols=70  Identities=21%  Similarity=0.341  Sum_probs=50.4

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN  413 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~  413 (449)
                      +.|++...||||+|++|+++|+++|+||.++.+.+..+.  ..=.|.+.   +   +...++++.+++.+  .+++|...
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~---d~~~leqI~kqL~Kl~dV~~V~r~   77 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G---DEKVLEQIEKQLHKLVDVLRVSEL   77 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S---CHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---c---cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            578999999999999999999999999999998754322  33344553   2   24456777777765  24455443

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.73  E-value=0.0027  Score=56.37  Aligned_cols=109  Identities=15%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             CCeEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEe---cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc
Q 013090           35 KNATVIRVDS-ANKHGILLEVVQVLTDLNLIVTKAYISS---DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF  110 (449)
Q Consensus        35 ~~~t~V~V~~-~Dr~GLl~~i~~vL~~~gl~I~~A~I~t---~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~  110 (449)
                      .+.+.|+|.+ +|+||.++++.++|+++|+||.--....   +.|..--.|.|...+.     +...+.|++ +.....+
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~-~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEP-VLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHH-HHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHH-HHHHhCC
Confidence            3567788775 8999999999999999999998544332   1344455688854221     112222222 1111111


Q ss_pred             cCCcceeeccCCCceEEEEEEeCC---ccchHHHHHHHHHhCCCeEEEE
Q 013090          111 ASSMRSVGVKQSMDHTAIELTGSD---RPGLLSEVSAVLTHLKCNVVSA  156 (449)
Q Consensus       111 ~~~~~~V~~~~~~~~t~i~v~~~D---rpGLl~~I~~~l~~~g~~I~~A  156 (449)
                           .+..  ..+...+.|+|.+   +||.++++..+|++.|+||..-
T Consensus        88 -----~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 -----EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             -----EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             -----cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence                 1222  3457789999987   9999999999999999999443

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.73  E-value=0.0077  Score=54.09  Aligned_cols=132  Identities=11%  Similarity=0.115  Sum_probs=83.1

Q ss_pred             CceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090          257 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  332 (449)
Q Consensus       257 ~~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~  332 (449)
                      ++.+.|+|. .+|+||.++++...|++.|+||..-..++.   ++...=.|.+..         ...++..+.|.+....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHHh
Confidence            345677773 589999999999999999999988666544   222211265522         2233444445432111


Q ss_pred             ---c----cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHH
Q 013090          333 ---R----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQS  402 (449)
Q Consensus       333 ---r----~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~  402 (449)
                         .    .+.-..+++.+.   ++||+++++.++|.+.||||....  |.  ...-.|.|...+    ....+..|.++
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tS--e~~Is~vV~~~d----~~~Av~~Lh~~  155 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TS--EIRISVLIREDD----LDAAARALHEQ  155 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGG----HHHHHHHHHHH
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cC--CCeEEEEEeHHH----HHHHHHHHHHH
Confidence               0    123477888886   899999999999999999998843  32  133356662111    11234566766


Q ss_pred             hcc
Q 013090          403 IGQ  405 (449)
Q Consensus       403 l~~  405 (449)
                      |..
T Consensus       156 F~l  158 (178)
T 2dtj_A          156 FQL  158 (178)
T ss_dssp             HTC
T ss_pred             Hcc
Confidence            654

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.71  E-value=0.0083  Score=53.22  Aligned_cols=118  Identities=8%  Similarity=0.049  Sum_probs=74.1

Q ss_pred             CceeEEEEEc-CCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090          257 KDYSVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  332 (449)
Q Consensus       257 ~~~tvv~V~~-~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~  332 (449)
                      ++.+.|+|.+ +|+||.++++...|++.|+||..-.....   .+...=.|.|...      +..+..++.+.+...+.-
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~------d~~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD------FAQEALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG------GHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH------HHHHHHHHHHHHHHHhCC
Confidence            3556777776 89999999999999999999988544322   1233234666321      111222222223333321


Q ss_pred             c---cCCceEEEEEeCC---CcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090          333 R---VSEGLKLELCTTD---RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  384 (449)
Q Consensus       333 r---~~~~~~l~v~~~D---rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~  384 (449)
                      .   .+.-..+.+.|.+   +||+++++.++|.+.||||....  |. +. .-.|.|.
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~  141 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIP  141 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEE
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEe
Confidence            1   1234668899976   99999999999999999995443  33 22 3456663

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.69  E-value=0.0042  Score=55.19  Aligned_cols=64  Identities=20%  Similarity=0.249  Sum_probs=50.1

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNV  196 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (449)
                      ...|+|...|+||+|++|+++|++.|+||.+..+.+ .+ +...-+|.|..        +...++.+..+|.++
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999875 33 44556666652        146778888877653

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.47  E-value=0.0067  Score=53.92  Aligned_cols=70  Identities=19%  Similarity=0.331  Sum_probs=50.5

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN  413 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~  413 (449)
                      +.|++...||||+|++|+++|+++|+||.++.+.+..+.  ..=.|.+.   +   +...+++|..++.+  .+++|..-
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~---d~~~leql~kQL~Kl~dV~~V~~~   78 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---G---PDEIVEQITKQLNKLIEVVKLIDL   78 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---E---CHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---c---cHHHHHHHHHHhcCCCCEEEEEEc
Confidence            578999999999999999999999999999998654332  22244453   2   24456788887776  24555543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.38  E-value=0.0081  Score=53.39  Aligned_cols=65  Identities=20%  Similarity=0.231  Sum_probs=50.6

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ...|.|...|+||+|++|+++|+..|+||.+..+.+ .+ +...-+|.|..        +...++.+..+|.++.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCCC
Confidence            457899999999999999999999999999998875 43 44556666653        1467788888776543

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.28  E-value=0.2  Score=53.47  Aligned_cols=190  Identities=16%  Similarity=0.191  Sum_probs=115.6

Q ss_pred             CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090           35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA  111 (449)
Q Consensus        35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~  111 (449)
                      .+...|.|.+.   ++||+.+++..+|.+.|+||.-..  +.+-  --.|.|...+     .+...+.|.+.+.......
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~--~Is~vI~~~d-----~~~Av~aLh~~f~~~~t~~  423 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEV--KVSCVIDQRD-----ADRAIAALSNAFGVTLSPP  423 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSS--EEEEEEEGGG-----HHHHHHHHHHHTTCCBCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCC--EEEEEEcHHH-----HHHHHHHHHHhhcccCCCc
Confidence            45678888875   789999999999999999997544  3222  1235554321     1235556666664431100


Q ss_pred             CC------ccee-eccCCCceEEEEEE-eCCccchHHHHHHHHHhCCCeEEEEEEEc--c--CCc--eEEEEEEeeCCCC
Q 013090          112 SS------MRSV-GVKQSMDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWT--H--NTR--AAALMQVTDEETG  177 (449)
Q Consensus       112 ~~------~~~V-~~~~~~~~t~i~v~-~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~--~~~--~~dvf~V~~~~~g  177 (449)
                      .+      ...| +.....+...|++. .+|+||+.++|...|+++|+||..-.-+.  +  +|.  .--.|.|..    
T Consensus       424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----  499 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----  499 (600)
T ss_dssp             CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred             cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence            00      1111 23334556677775 59999999999999999999995444332  1  242  234455543    


Q ss_pred             CCCCCHHHHHHHHHHhcccccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCC
Q 013090          178 GAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK  257 (449)
Q Consensus       178 ~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~  257 (449)
                            +.+++..+.|.+ +..+..                                           .-.|.++    +
T Consensus       500 ------~d~~~a~~~l~~-~~~~~~-------------------------------------------~~~v~~~----~  525 (600)
T 3l76_A          500 ------GDSSQAEAILQP-LIKDWL-------------------------------------------DAAIVVN----K  525 (600)
T ss_dssp             ------HHHHHHHHHHHH-HTTTST-------------------------------------------TCEEEEE----C
T ss_pred             ------HHHHHHHHHHHH-HHHhcC-------------------------------------------CceEEEe----C
Confidence                  222333332222 111110                                           0122232    2


Q ss_pred             ceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEE
Q 013090          258 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHAN  291 (449)
Q Consensus       258 ~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~  291 (449)
                      +...|.|.|   +.+||+-+++.++|.+.|+||..-.
T Consensus       526 ~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          526 AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            456777775   6899999999999999999998744

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.20  E-value=0.079  Score=48.03  Aligned_cols=128  Identities=13%  Similarity=0.187  Sum_probs=86.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcc
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS-SDG-CWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMR  115 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~  115 (449)
                      ..+.|...|+||.|++++++|...|+||.+-.+. |.+ |..--++.|...       +...+.|++.|......    .
T Consensus        30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidV----i   98 (193)
T 2fgc_A           30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEV----V   98 (193)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTE----E
T ss_pred             EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCce----E
Confidence            5799999999999999999999999999988886 544 776667777532       23667888888765321    1


Q ss_pred             ee-eccC------CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHH
Q 013090          116 SV-GVKQ------SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSV  188 (449)
Q Consensus       116 ~V-~~~~------~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~  188 (449)
                      .| ++..      ..+...+.|.+...   -.+|.++...++.+|.+..-.      .-++.++.    .    +++.+.
T Consensus        99 kV~dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv~~~------s~~iE~tG----~----~~ki~a  161 (193)
T 2fgc_A           99 KVTPIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDVSRE------GAIIEITG----A----RSKVEA  161 (193)
T ss_dssp             EEEECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEECSS------EEEEEEEE----C----HHHHHH
T ss_pred             EEEEecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEEcCC------EEEEEEcC----C----HHHHHH
Confidence            11 1111      12345677777543   788888888888888776311      23455554    2    567666


Q ss_pred             HHHHh
Q 013090          189 IKELL  193 (449)
Q Consensus       189 l~~~L  193 (449)
                      +.+.|
T Consensus       162 ~i~~l  166 (193)
T 2fgc_A          162 FINLL  166 (193)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            66544

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.15  E-value=0.018  Score=50.82  Aligned_cols=59  Identities=19%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      .|+|.|.||+|+|++|+.+|+.+++||....+.+.| .    +++.-+     ..+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g-~----i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-R----IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT-E----EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC-E----EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            488999999999999999999999999999998763 2    555542     1124566777766655

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.11  E-value=0.015  Score=52.34  Aligned_cols=110  Identities=15%  Similarity=0.204  Sum_probs=72.7

Q ss_pred             CeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE-ec--CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090           36 NATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYIS-SD--GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA  111 (449)
Q Consensus        36 ~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~--~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~  111 (449)
                      +.+.|+|. .+|+||.++++..+|+++|+||.--... +.  .|..--.|.|...+-..  ..+.++.+.+.+.      
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~------   86 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIG------   86 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHC------
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcC------
Confidence            44566654 7899999999999999999999744432 22  56666678885432111  0111222222221      


Q ss_pred             CCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEE
Q 013090          112 SSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       112 ~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                        -..+..  ..+...|.|+|.   +.||+.+++..+|++.|+||....
T Consensus        87 --~~~v~~--~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           87 --FSQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             --CSEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             --cceEEE--eCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence              011222  245677888876   799999999999999999998876

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.89  E-value=0.0091  Score=52.73  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090          339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  374 (449)
Q Consensus       339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g  374 (449)
                      .|+|.|.||+|+|++|+++|.++++||..+.+.+.|
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g   37 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG   37 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence            589999999999999999999999999999986653

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.82  E-value=0.038  Score=50.18  Aligned_cols=67  Identities=12%  Similarity=0.274  Sum_probs=50.8

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE-ccC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW-THN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  198 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~-T~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  198 (449)
                      ....|+|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.|...        ...++.|..+|.++..
T Consensus        28 m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLid   96 (193)
T 2fgc_A           28 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVE   96 (193)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTT
T ss_pred             eEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCc
Confidence            356899999999999999999999999999998886 444 344456666541        2456778888776543

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.78  E-value=0.012  Score=54.26  Aligned_cols=49  Identities=10%  Similarity=0.302  Sum_probs=36.5

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-----CceEEEEEEee
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-----TRAAALMQVTD  173 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-----~~~~dvf~V~~  173 (449)
                      ...|.+.+.||||+|++|+.+|+++++||......+..     +.+.-.+.+.+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            56799999999999999999999999999999999853     34554455543

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.30  E-value=0.1  Score=53.14  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             CeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090           36 NATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYISSD---GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA  111 (449)
Q Consensus        36 ~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~  111 (449)
                      +.+.|+|. .+|+||.++++.+.|+++|+||.--...|.   +|...-.|.|...+.     +...+.|++ +...+.+ 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~-  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW-  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTC-
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCC-
Confidence            33466676 689999999999999999999986544432   454455677754211     112233332 2221110 


Q ss_pred             CCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEE
Q 013090          112 SSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSA  156 (449)
Q Consensus       112 ~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A  156 (449)
                         ..+..  ..+...+.|+|.   +.||.++++..+|++.|+||..-
T Consensus       336 ---~~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          336 ---TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             ---SEEEE--ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             ---ceEEE--eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence               11222  245677888886   78999999999999999999843

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.12  E-value=0.12  Score=46.34  Aligned_cols=134  Identities=10%  Similarity=0.071  Sum_probs=80.1

Q ss_pred             ceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090          258 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  332 (449)
Q Consensus       258 ~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-  332 (449)
                      +.+.|+|. .+|+||.++++...|++.|+||..-.....   .+..-=.|.|...      +..+..++.+.+...+.- 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~------~~~~a~~~L~~~~~el~~~   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD------VGPAAVEKLDSLRNEIGFS   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT------THHHHHHHHHHTHHHHCCS
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh------HHHHHHHHHHHHHHhcCcc
Confidence            34455543 579999999999999999999976543222   2333345666321      111222222223333320 


Q ss_pred             c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          333 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       333 r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      .   .+.-..+.+.+.   ++||+.+++.++|.+.||||....  |-  ...=.|.|...+    ....+.+|.++|..
T Consensus        89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tS--ei~Is~vV~~~d----~~~Av~aLH~~f~l  159 (181)
T 3s1t_A           89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTE----LDKAVVALHEAFGL  159 (181)
T ss_dssp             EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGG----HHHHHHHHHHHHTC
T ss_pred             eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEeHHH----HHHHHHHHHHHHcC
Confidence            0   123478888875   899999999999999999998876  22  223355663221    12234566666543

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.72  E-value=0.099  Score=47.82  Aligned_cols=135  Identities=10%  Similarity=0.073  Sum_probs=82.2

Q ss_pred             CceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090          257 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  332 (449)
Q Consensus       257 ~~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~  332 (449)
                      ++.+.|+|. .+|+||+.+++-..|++.|+||..-..+..   .+...-.|.+...      +..+...+.+.+...+..
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~------d~~~~~~~l~~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD------VGPAAVEKLDSLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG------GHHHHHHHHHTTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh------hHHHHHHHHHHHHhhhce
Confidence            345666665 589999999999999999999987544322   2344344555221      111222232333333321


Q ss_pred             c----cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          333 R----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       333 r----~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      .    .+.-.++.+.+.   .+||+.+++-.+|.+.||||.-..  |-  .-.=.|.|...+    ....+.+|-++|+.
T Consensus       107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS--Ei~IS~vV~~~d----~~~Av~aLH~~F~L  178 (200)
T 4go7_X          107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTE----LDKAVVALHEAFGL  178 (200)
T ss_dssp             SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGGG----HHHHHHHHHHHHTC
T ss_pred             eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc--CCEEEEEEeHHH----HHHHHHHHHHHhCC
Confidence            1    122467888874   789999999999999999998875  21  223356663221    12235666666653

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.65  E-value=0.055  Score=49.53  Aligned_cols=111  Identities=11%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             CCeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEe---cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc
Q 013090           35 KNATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYISS---DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF  110 (449)
Q Consensus        35 ~~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t---~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~  110 (449)
                      .+.+.|+|. .+|+||..+++-+.|++.|+||---....   .++.....|.+...+.         +...+.|.+... 
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~---------~~~~~~l~~~~~-  102 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG---------PAAVEKLDSLRN-  102 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH---------HHHHHHHHTTHH-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH---------HHHHHHHHHHHh-
Confidence            355677776 69999999999999999999998543321   3456666788854211         222222322210 


Q ss_pred             cCCcceeeccCCCceEEEEEEe---CCccchHHHHHHHHHhCCCeEEEEE
Q 013090          111 ASSMRSVGVKQSMDHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       111 ~~~~~~V~~~~~~~~t~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                      ......+..  ..+...|.++|   ...||+.+++..+|++.|+||..-.
T Consensus       103 ~~~~~~v~~--~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          103 EIGFSQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             HHCCSEEEE--ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             hhceeeEEE--ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            000111222  23345566664   5689999999999999999998764

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=94.37  E-value=0.23  Score=50.52  Aligned_cols=135  Identities=10%  Similarity=0.068  Sum_probs=81.4

Q ss_pred             CceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090          257 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  332 (449)
Q Consensus       257 ~~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~  332 (449)
                      ++.+.|+|. .+|+||.++++...|++.|+||..-...+.   .+...=.|.| +.     ++..+..++.+.+...+..
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v-~~-----~~~~~a~~~l~~~~~~~~~  335 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTC-PR-----SDGRRAMEILKKLQVQGNW  335 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEE-ET-----TTHHHHHHHHHHHHTTTTC
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEE-ec-----hhHHHHHHHHHHHHHHcCC
Confidence            355678887 589999999999999999999988655443   2223234666 32     1212222222222222221


Q ss_pred             -c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          333 -R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       333 -r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                       .   ...-..+.|.+.   ++||+++++..+|.+.||||....  |.  ...-.|.|...+    ....+..|.++|..
T Consensus       336 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S--e~~is~vV~~~d----~~~Av~~Lh~~f~~  407 (421)
T 3ab4_A          336 TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TS--EIRISVLIREDD----LDAAARALHEQFQL  407 (421)
T ss_dssp             SEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGG----HHHHHHHHHHHTTC
T ss_pred             ceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cC--CCeEEEEEeHHH----HHHHHHHHHHHHhc
Confidence             0   112356888885   799999999999999999998543  32  123355553221    12234566666653

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.34  E-value=0.077  Score=48.92  Aligned_cols=47  Identities=17%  Similarity=0.135  Sum_probs=36.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEEE
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-----GCWFMDVFNVT   84 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-----~g~~~d~F~V~   84 (449)
                      ..+.|.+.||||+|++++.+|++++.||...+..+.     ++.+.-.+.|.
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            568899999999999999999999999999999874     56766555554

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.17  E-value=0.13  Score=49.60  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             hCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEeCCCcChHHHHHHHHH
Q 013090          282 DMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV-SEGLKLELCTTDRVGLLSNVTRIFR  359 (449)
Q Consensus       282 ~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~-~~~~~l~v~~~DrpGLL~~it~~l~  359 (449)
                      ..|+.|..-.|... ++..  .|+|......+..+     .+.      ...+. ...+.|-+...|+||-|+++-..|+
T Consensus       156 ~ygL~il~~~I~D~~~N~T--RF~vl~~~~~~~~~-----~~~------~~~~~~~~ktsl~f~~~~~pGaL~~~L~~Fa  222 (283)
T 2qmx_A          156 LYGLDILKENLADEEWNIT--RFFCIAHENNPDIS-----HLK------VRPDVARQKTSIVFALPNEQGSLFRALATFA  222 (283)
T ss_dssp             HTTCEEEESSCSSCCCCEE--EEEEEEETTCCCCT-----TSS------SCCEEEEEEEEEEEEEECCTTHHHHHHHHHH
T ss_pred             HcCCceecccCcCCCCCee--eEEEEecCcccccc-----ccc------cCCCCCCceEEEEEEcCCCCchHHHHHHHHH
Confidence            35788877666555 3343  48887654332100     000      00000 1245666666799999999999999


Q ss_pred             hCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHH
Q 013090          360 ENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAK  394 (449)
Q Consensus       360 ~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~  394 (449)
                      .+|||+++.+....+.+ .+=+||| |..|.+-++.
T Consensus       223 ~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d~~  257 (283)
T 2qmx_A          223 LRGIDLTKIESRPSRKKAFEYLFYA-DFIGHREDQN  257 (283)
T ss_dssp             TTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTSHH
T ss_pred             HcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCcHH
Confidence            99999999998766544 6668988 6778666655

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.10  E-value=0.11  Score=50.71  Aligned_cols=98  Identities=14%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             hCC-ceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC-CCcChHHHHHHHH
Q 013090          282 DMQ-YVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT-DRVGLLSNVTRIF  358 (449)
Q Consensus       282 ~~g-l~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~-DrpGLL~~it~~l  358 (449)
                      -.| +.|..-.|... ++..  .|+|..........                 .....+.|-+... |+||-|+++-..|
T Consensus       163 ~Yg~L~il~~~I~D~~~N~T--RFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~F  223 (313)
T 3mwb_A          163 EQPGLNVLAEDIGDNPDAVT--RFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQF  223 (313)
T ss_dssp             HCTTCEEEESCCCSCTTCEE--EEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHH
T ss_pred             HcCChhhhhhcccCCCccee--EEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence            456 88888777655 3444  48887654321110                 0112466777775 9999999999999


Q ss_pred             HhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHH
Q 013090          359 RENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSI  399 (449)
Q Consensus       359 ~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~l  399 (449)
                      +.+|||+.+.+-.....+ .+=+||| |..|..-++...++|
T Consensus       224 a~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~v~~aL  264 (313)
T 3mwb_A          224 ASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATDSRVADAL  264 (313)
T ss_dssp             HTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTSHHHHHHH
T ss_pred             HHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCcHHHHHHH
Confidence            999999999998765444 5668888 667766565533333

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=93.74  E-value=0.25  Score=48.54  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=45.8

Q ss_pred             eEEEEEeC--CCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHHH
Q 013090          338 LKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIR  400 (449)
Q Consensus       338 ~~l~v~~~--DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~lr  400 (449)
                      +.+-+...  |+||-|+++-..|+.+|||+++.+......+ .+=+||| |..|.+-++...++|+
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~v~~AL~  271 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEERFRDALV  271 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSHHHHHHHH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCHHHHHHHH
Confidence            33444444  7999999999999999999999998766555 5558888 6778766666334443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.87  E-value=0.35  Score=50.70  Aligned_cols=65  Identities=15%  Similarity=0.277  Sum_probs=50.4

Q ss_pred             CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090          335 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ  401 (449)
Q Consensus       335 ~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~  401 (449)
                      +.++.|-+.-.|+||.+..|+.+|.++||||...++....+..+-+..+.  ...+++.+.+++|++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~--vd~~~~~~~l~~l~~  516 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLR--LDQDVPDDVRTAIAA  516 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEE--ESSCCCHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEE--ECCCCCHHHHHHHhc
Confidence            45688899999999999999999999999999999976543334444442  244778887777776

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=92.48  E-value=0.4  Score=45.71  Aligned_cols=88  Identities=14%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             hCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEe---CCCcChHHHHHHH
Q 013090          282 DMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCT---TDRVGLLSNVTRI  357 (449)
Q Consensus       282 ~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~---~DrpGLL~~it~~  357 (449)
                      ..|+.|..-.|... ++..  .|+|..... +                   .. ...+.|-+..   .|+||-|+++-..
T Consensus       153 ~ygL~il~~~I~D~~~N~T--RF~vl~~~~-~-------------------~~-~~ktsl~f~~~~~~~~pGaL~~~L~~  209 (267)
T 2qmw_A          153 AYGFTPIDTHIEDYPHNVT--RFLVIKNQQ-Q-------------------FD-QNATSLMFLITPMHDKPGLLASVLNT  209 (267)
T ss_dssp             GGTCCEEEECCCSCSCCEE--EEEEEESCC-C-------------------CC-SSCSEEEEEEEESSCCTTHHHHHHHH
T ss_pred             HCCCcEeeccccCCCCCce--EEEEEecCC-C-------------------CC-CCeEEEEEEcCCCCCCcChHHHHHHH
Confidence            34788888777665 3444  488875433 1                   01 2345676777   8999999999999


Q ss_pred             HHhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHH
Q 013090          358 FRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAK  394 (449)
Q Consensus       358 l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~  394 (449)
                      |+.+|||+++.+...... ..+=.|||. .. .+-++.
T Consensus       210 Fa~~gINLtkIESRP~~~~~~~Y~FfiD-~e-~~~d~~  245 (267)
T 2qmw_A          210 FALFNINLSWIESRPLKTQLGMYRFFVQ-AD-SAITTD  245 (267)
T ss_dssp             HHTTTCCEEEEEEEECSSSTTCEEEEEE-ES-CCSCHH
T ss_pred             HHHcCCCeeEEEEeecCCCCccEEEEEE-Ee-cCCcHH
Confidence            999999999999876654 467799994 44 444444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.77  E-value=0.27  Score=49.75  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=41.2

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEE
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  383 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v  383 (449)
                      ...|-+.-.|+||.+..|+.+|.++||||......+.|+.|--++.+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            35788888999999999999999999999999999977777666666

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=89.94  E-value=2.7  Score=43.00  Aligned_cols=116  Identities=10%  Similarity=0.143  Sum_probs=75.1

Q ss_pred             CceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090          257 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  332 (449)
Q Consensus       257 ~~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-  332 (449)
                      ++.+.|+|.+   ++.||.++++...|++.|++|..-  .+....  =.|.|...+-..     ..+.+.+.|...+.. 
T Consensus       296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~~--is~~V~~~d~~~-----~~~~~~~el~~~~~~~  366 (446)
T 3tvi_A          296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVDS--VSLVIEDCKLDG-----KCDKIIEEIKKQCNPD  366 (446)
T ss_dssp             EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETTE--EEEEEEHHHHTT-----THHHHHHHHHHHSCCS
T ss_pred             CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCCE--EEEEEecchHHH-----HHHHHHHHHHHhcCCC
Confidence            3457888886   689999999999999999999763  222221  236663321110     123444444443321 


Q ss_pred             c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEEE
Q 013090          333 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVG  384 (449)
Q Consensus       333 r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v~  384 (449)
                      .   ...-..+.+++.   .+||+.+++..+|.+.||||....   +|..... .|.|.
T Consensus       367 ~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs---qgtSei~Is~vV~  422 (446)
T 3tvi_A          367 SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID---QGSSEINVIVGVE  422 (446)
T ss_dssp             EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE---ECSCTTEEEEEEE
T ss_pred             cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE---ecCCCceEEEEEc
Confidence            0   012367888875   589999999999999999998765   5544343 55553

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.66  E-value=1.2  Score=46.53  Aligned_cols=64  Identities=17%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 013090          122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKE  191 (449)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~  191 (449)
                      ......|.+.-+|+||.+.+|+..|.++|+||...++..  .++.+.-++.+.++     ++ ++.+++|++
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~-----~~-~~~l~~l~~  516 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD-----VP-DDVRTAIAA  516 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC-----CC-HHHHHHHHH
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC-----CC-HHHHHHHhc
Confidence            345677888999999999999999999999999999986  35667777777652     32 456666654

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.45  E-value=1.1  Score=45.85  Aligned_cols=109  Identities=15%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             eEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090           37 ATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS  113 (449)
Q Consensus        37 ~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~  113 (449)
                      .+.|+|.+   ++.||.++++..+|+++|++|.--  .+...  --.|.|...+-.. ....+++.+++.+..       
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~~-~~~~~~~el~~~~~~-------  365 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLDG-KCDKIIEEIKKQCNP-------  365 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHTT-THHHHHHHHHHHSCC-------
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHHH-HHHHHHHHHHHhcCC-------
Confidence            44677775   689999999999999999999732  22221  2246675432211 011233333333221       


Q ss_pred             cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090          114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWT  160 (449)
Q Consensus       114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T  160 (449)
                       ..|..  ..+...|.|+|.   ..||+.+++..+|++.|+||....-.|
T Consensus       366 -~~v~v--~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgt  412 (446)
T 3tvi_A          366 -DSIEI--HPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGS  412 (446)
T ss_dssp             -SEEEE--EEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             -CcEEE--eCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecC
Confidence             11221  234678889886   489999999999999999998765333

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=88.27  E-value=1.3  Score=44.72  Aligned_cols=49  Identities=10%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 013090           36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT   84 (449)
Q Consensus        36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~   84 (449)
                      +...+.+.-.|+||.+..+..+|.++|+||...++.+.++.++-++-|.
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            4557888899999999999999999999999999999999998887774

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.76  E-value=0.95  Score=45.91  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=42.6

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 013090           35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV   83 (449)
Q Consensus        35 ~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V   83 (449)
                      .+...|.+.-+|.||.+.+|..+|+++|+||..-...|.++++.-+.-|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            3568999999999999999999999999999988888999888555444

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=83.74  E-value=4.1  Score=42.38  Aligned_cols=109  Identities=20%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             CeEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCC-ChHHHHHHHHHhccccccc
Q 013090           36 NATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKIT-DEGILDYIRKCLGPEACFA  111 (449)
Q Consensus        36 ~~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~-~~~~~~~I~~~L~~~~~~~  111 (449)
                      +.+.|+|.+   .+++|.++++-.+|+++|++|.--. ++...   -.|.|...+..... ..+.++.+.+.|....   
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~s---is~~v~~~~~~~~~~~~~~l~~~~~el~~~~---  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEVS---ISLTLDPSKLWSRELIQQELDHVVEELEKIA---  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETTE---EEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCCe---EEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence            445677774   6789999999999999999998542 22222   23566432211110 1234455555554311   


Q ss_pred             CCcceeeccCCCceEEEEEEeC--CccchHHHHHHHHHhCCCeEEEEE
Q 013090          112 SSMRSVGVKQSMDHTAIELTGS--DRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       112 ~~~~~V~~~~~~~~t~i~v~~~--DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                          .+..  ..+...|.|+|.  ..||+.+++..+|++.|+||..-.
T Consensus       413 ----~v~~--~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs  454 (510)
T 2cdq_A          413 ----VVNL--LKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS  454 (510)
T ss_dssp             ----EEEE--EEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE
T ss_pred             ----eEEE--eCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE
Confidence                1222  234667888887  788999999999999999997653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=83.36  E-value=0.93  Score=46.40  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=29.8

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEE
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAE  369 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~  369 (449)
                      .|-|.+...|+||.|++|+.+|.++||+|.+..
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~  391 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMV  391 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence            488999999999999999999999999999875

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=83.06  E-value=5.8  Score=40.10  Aligned_cols=50  Identities=22%  Similarity=0.295  Sum_probs=44.9

Q ss_pred             CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090          123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT  172 (449)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~  172 (449)
                      .....|.+.-.|+||.|.+|..+|+++|+||..-...|.++.+.-+.-|.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            45689999999999999999999999999999999999998877766665

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=80.08  E-value=2.6  Score=36.35  Aligned_cols=127  Identities=11%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             ceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc-
Q 013090          258 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR-  333 (449)
Q Consensus       258 ~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r-  333 (449)
                      +.+.|+|.+   +++||..+++...|++.|++|..-.  +....  =.|+|.+.  .      .++++.+.|.+.-.-. 
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~~--Isf~v~~~--~------~~~~il~~l~~~~~v~~   84 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEVG--VSLTIDND--K------NLPDIVRALSDIGDVTV   84 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSSE--EEEEESCC--T------THHHHHHHHTTTEEEEE
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCCE--EEEEECCh--H------HHHHHHHHHhccCeEEE
Confidence            456777774   5789999999999999999986633  32222  23666321  1      1233333332210000 


Q ss_pred             cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090          334 VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVGGASGYPVDAKIIDSIRQSIGQ  405 (449)
Q Consensus       334 ~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v~~~~g~p~~~~~~~~lr~~l~~  405 (449)
                      ...-..+.+.+.   ++||+.+++..+|.  |++|....   +|....+ .|.|...+    ....+..|.++|..
T Consensus        85 ~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is---qg~Se~~is~vv~~~d----~~~a~~~Lh~~f~~  151 (157)
T 3mah_A           85 DKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS---YGGSNYNVSVLVKAED----KKKALIALSNKLFN  151 (157)
T ss_dssp             EEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE---ECSSSSCEEEEEEGGG----HHHHHHHHHHHHHC
T ss_pred             eCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe---eCCCCCEEEEEEcHHH----HHHHHHHHHHHHhc
Confidence            012367777775   68999999999999  88887654   5544334 56663221    12234555565543

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=80.01  E-value=2  Score=37.17  Aligned_cols=113  Identities=18%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             CeEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090           36 NATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS  112 (449)
Q Consensus        36 ~~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~  112 (449)
                      +.+.|+|.+   +++||..+++...|+++|+||.--.  +...  --.|.|.+.+        ....+.+.|...     
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~--------~~~~il~~l~~~-----   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK--------NLPDIVRALSDI-----   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT--------THHHHHHHHTTT-----
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH--------HHHHHHHHHhcc-----
Confidence            456788774   5789999999999999999996322  2222  2346664321        123333334321     


Q ss_pred             CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                        ..+..  ..+...|.+.|.   ++||+.+++..+|+  |+||....-.|..  .--.|.|..
T Consensus        80 --~~v~~--~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se--~~is~vv~~  135 (157)
T 3mah_A           80 --GDVTV--DKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSN--YNVSVLVKA  135 (157)
T ss_dssp             --EEEEE--EEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSS--SCEEEEEEG
T ss_pred             --CeEEE--eCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCC--CEEEEEEcH
Confidence              11221  234677888876   58999999999999  9998775433322  234455553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	449
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	3e-05
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	2e-04
d1u8sa2	93	d.58.18.5 (A:88-180) putative transcriptional repr	4e-04
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	6e-04

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 122 SM-DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172
           S+  H  I   G+DRPG+ +EV  ++T   CN++ + +         LM ++
Sbjct: 1   SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISD 182
             + +   ++ G+L +++ ++     N+  A+ +   +        +  E  GG    
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEK 59

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 121 QSMDHTA-IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173
           Q+  +T  + +   D+ GL  + +      +  + S            L    +
Sbjct: 1   QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS--AQTISKDKLHSEQN 52

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172
           I + G D+ G+++ VS  +  L  N+        +     +  V+
Sbjct: 5   ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	449
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.72
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.58
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.42
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.41
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.36
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.87
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.82
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.76
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.66
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.45
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.36
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.34
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.34
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.3
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.28
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.19
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.13
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.88
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.8
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.67
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.58
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.55
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.48
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.03
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	92.11
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	92.05
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.87

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.72  E-value=2.3e-08  Score=78.04  Aligned_cols=64  Identities=25%  Similarity=0.500  Sum_probs=55.6

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  195 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (449)
                      ++++|++.|+||||++++++++|+++||||..++.++.++.....+.|+-+        +...++++..|..
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL   67 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH
Confidence            578999999999999999999999999999999999999998888888852        3456777776655

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.58  E-value=2.1e-07  Score=72.40  Aligned_cols=66  Identities=24%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 013090          256 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  328 (449)
Q Consensus       256 ~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  328 (449)
                      ...+++|+|.|+||||++++++..|+++|+||.+++..+.++...-.+.|.   +.    +...++|+..|..
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~---~~----~~~~~~l~~~L~~   67 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS---GS----PSNITRVETTLPL   67 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE---EC----HHHHHHHHHHHHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE---cC----cccHHHHHHHHHH
Confidence            356789999999999999999999999999999999999988776555552   22    2345666665554

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.42  E-value=1.9e-07  Score=73.71  Aligned_cols=67  Identities=13%  Similarity=0.260  Sum_probs=47.4

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC----ceeeEEEEEcCCCCCCCHHHHHHHHHHhc
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG----KAVNTFYVGGASGYPVDAKIIDSIRQSIG  404 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~----~~~d~F~v~~~~g~p~~~~~~~~lr~~l~  404 (449)
                      ...++|.|.|||||+++||++|.++|+||.++.-.|+..    ...+.|.+.-....|.+.. ++.|+++|.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~-~~~l~~~l~   76 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCN-LMQLQEEFD   76 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSC-HHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCcccc-HHHHHHHHH
Confidence            356778899999999999999999999999999887643    3456787655444454443 345555443

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.41  E-value=7e-07  Score=68.75  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=44.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDED   87 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~   87 (449)
                      ++|++.|+||||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~   52 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE   52 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEec
Confidence            57999999999999999999999999999999999888887777776554

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.36  E-value=1.2e-06  Score=67.38  Aligned_cols=63  Identities=8%  Similarity=0.051  Sum_probs=47.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 013090          260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  328 (449)
Q Consensus       260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  328 (449)
                      ++|+|.|+||||++++++.+|+++|+||.+.+..+.++.+.-.+.+..+ +. .    ..++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~-~----~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EK-Q----DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SC-C----CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cC-C----CHHHHHHHHHH
Confidence            5899999999999999999999999999999998887765444444322 21 1    23556666654

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.87  E-value=1e-05  Score=63.37  Aligned_cols=37  Identities=14%  Similarity=0.209  Sum_probs=33.1

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH  161 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~  161 (449)
                      ...|+|.|+|||||+++|+++|+++|+||.+..-.|.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~   42 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI   42 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccc
Confidence            4567889999999999999999999999999987763

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.82  E-value=2.9e-05  Score=57.63  Aligned_cols=48  Identities=15%  Similarity=0.243  Sum_probs=44.2

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeC
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE  174 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~  174 (449)
                      +|.|.-+|+||-|++++++|++.|+||++..++..++++.-+|.+.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH
Confidence            578889999999999999999999999999999988999888888763

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=9.6e-05  Score=55.71  Aligned_cols=64  Identities=16%  Similarity=0.300  Sum_probs=49.5

Q ss_pred             CceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC--CceeeEEEEEcCCCCCCCHHHHHHHHHHh
Q 013090          336 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQSI  403 (449)
Q Consensus       336 ~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g--~~~~d~F~v~~~~g~p~~~~~~~~lr~~l  403 (449)
                      +++.|-+.-.|+||+|++|+.+|.++|+||..+.+.+..  +.|.-++.+    ..+++.+.+++|++--
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v----D~~~~~~vl~~I~~~~   67 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAAAV   67 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc----CCCccHHHHHHHHcCC
Confidence            467889999999999999999999999999999987653  334334443    3477777667777643

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.66  E-value=3.6e-05  Score=57.08  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090           39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD   85 (449)
Q Consensus        39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~   85 (449)
                      +|.|..+|+||-|++++++|.+.|+||...+.+...++++-+|.|.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47888999999999999999999999999999988889998998843

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=0.00045  Score=51.88  Aligned_cols=62  Identities=18%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 013090          124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKE  191 (449)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~  191 (449)
                      +.+.+.+.-.|+||.+++|+.+|+++|+||...++.+  .++.+..++.+..     ++. ++-+++|++
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~-----~~~-~~vl~~I~~   65 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ-----DVP-DDVRTAIAA   65 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS-----CCC-HHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCC-----Ccc-HHHHHHHHc
Confidence            3567888999999999999999999999999999977  4566666666532     232 445555544

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=0.00034  Score=52.43  Aligned_cols=71  Identities=15%  Similarity=0.330  Sum_probs=53.0

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhccc--eeeec
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT--ILKVK  411 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~~--~~~~~  411 (449)
                      .+.+.+...|+||+|+.|+.+|..+|.||.++.+....+...-.+-++- .|   +++.++++..+|...  +++|.
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv-~g---~~~~i~qi~kQl~KlidV~~V~   75 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV-KG---DDKTIEQIEKQAYKLVEVVKVT   75 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE-EE---CTTHHHHHHHHHTTSTTEEEEE
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE-Ec---CHHHHHHHHHHHhCCcCEEEEE
Confidence            4678999999999999999999999999999998866555554443331 23   334467888888873  45554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.34  E-value=0.00016  Score=53.22  Aligned_cols=47  Identities=23%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 013090           38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT   84 (449)
Q Consensus        38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~   84 (449)
                      -++.|+..||||.|++++++|.+.|+||..-.+....++.+-.|.|.
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            36999999999999999999999999999988876566665566563

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.34  E-value=0.00047  Score=50.66  Aligned_cols=47  Identities=19%  Similarity=0.197  Sum_probs=40.9

Q ss_pred             EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090          127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD  173 (449)
Q Consensus       127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~  173 (449)
                      .|.|...||||.|++++++|++.|+||.+..+....+...-.|.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            48899999999999999999999999999999877777666666554

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.30  E-value=7.7e-05  Score=56.15  Aligned_cols=48  Identities=13%  Similarity=0.295  Sum_probs=36.0

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCce--EEEEEEee
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRA--AALMQVTD  173 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~--~dvf~V~~  173 (449)
                      ..|.|.+.||||+|++|+.+++++|+||......+ .+|.+  ...+++.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            35889999999999999999999999999999887 44444  46666665

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00049  Score=51.29  Aligned_cols=71  Identities=20%  Similarity=0.379  Sum_probs=53.5

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhccc--eeeecC
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT--ILKVKG  412 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~~--~~~~~~  412 (449)
                      ..+.+...|+||+|+.|+.+|..+|.||.++.+..........|-+.- .|   +++.++++..+|...  +++|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv-~~---~~~~i~qi~kQL~KlidV~~V~d   74 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQT-VG---DEKVLEQIEKQLHKLVDVLRVSE   74 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEE-ES---CHHHHHHHHHHHHHSTTEEEEEE
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEE-EC---CHHHHHHHHHHHhCCCCEEEEEe
Confidence            468888999999999999999999999999998755455444554431 23   556678888888873  466653

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.19  E-value=0.00049  Score=51.40  Aligned_cols=70  Identities=17%  Similarity=0.349  Sum_probs=51.3

Q ss_pred             eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhccc--eeeec
Q 013090          338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT--ILKVK  411 (449)
Q Consensus       338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~~--~~~~~  411 (449)
                      ..+.+...|+||+|+.|+..|+.+|.||.++.+....+...-.+-++ ..|   +++.++++..+|...  +++|.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtiv-v~~---~~~~i~qi~kQL~KlvdVi~V~   74 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLV-TNG---PDEIVEQITKQLNKLIEVVKLI   74 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEE-EEE---CHHHHHHHHHHHHHSTTEEEEE
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEE-EEC---CHHHHHHHHHHHhCCcCEEEEE
Confidence            46889999999999999999999999999999875544443333332 123   455578888888873  45554

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.13  E-value=0.00016  Score=54.25  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec-CCceeeEEEE
Q 013090          339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYV  383 (449)
Q Consensus       339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~-g~~~~d~F~v  383 (449)
                      -|.+.+.||||+|++|+.+|.++++||..+...+. .+.+.-.|.+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i   48 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALI   48 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEE
Confidence            58899999999999999999999999999987664 3344444433

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0037  Score=47.27  Aligned_cols=47  Identities=13%  Similarity=0.287  Sum_probs=38.5

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEE
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQV  171 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V  171 (449)
                      ...|.+.-.|+||.+++|+.+|+++|+||.+....+.++....+..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            35788888999999999999999999999999988866544444333

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0031  Score=47.69  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=39.4

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEE
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  383 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v  383 (449)
                      +..|-+.-.|+||.|++|+.+|.++|+||......+.++-+.-+-.+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            57888889999999999999999999999999988877655444333

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.0057  Score=45.51  Aligned_cols=65  Identities=14%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceE--EEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAA--ALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~--dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ...|.+...|+||+|++|++.|+..|+||.+..+........  .++.+..    .    ++..+.+...|.+..
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g----~----~~~i~qi~kQl~Kli   69 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----D----DKTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----C----TTHHHHHHHHHTTST
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc----C----HHHHHHHHHHHhCCc
Confidence            357899999999999999999999999999999876433323  3344432    2    245677777766543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.58  E-value=0.004  Score=46.28  Aligned_cols=64  Identities=19%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCce-EEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRA-AALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~-~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ..|.+...|+||.|++|++.|+..|+||.+..+.. ..... -.++.+..        +++.++.+...|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence            46889999999999999999999999999999984 43333 34455443        1456777777776543

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.55  E-value=0.0057  Score=45.79  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=42.2

Q ss_pred             eCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHHHHHhc
Q 013090          344 TTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIG  404 (449)
Q Consensus       344 ~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~lr~~l~  404 (449)
                      ..|+||-|+++-..|+++|||+++.+-.....+ .+=.|||. .+|. .+.. .+.+-++|.
T Consensus         9 ~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id-~~g~-~~~~-~~~~l~~L~   67 (80)
T d2qmwa2           9 MHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQ-ADSA-ITTD-IKKVIAILE   67 (80)
T ss_dssp             SSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEE-ESCC-SCHH-HHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EecC-CcHH-HHHHHHHHH
Confidence            469999999999999999999999997765444 56689994 5564 3554 333333333

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.005  Score=45.61  Aligned_cols=65  Identities=18%  Similarity=0.228  Sum_probs=46.4

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090          126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  197 (449)
Q Consensus       126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L  197 (449)
                      ..|.+...|+||+|++|+++|+..|+||.+..+.. .......+-.+..   |.    ++..+.+...|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~~----~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD----EKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC----HHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---CC----HHHHHHHHHHHhCCC
Confidence            36788899999999999999999999999999984 4433332222322   22    456677777766543

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.03  E-value=0.0038  Score=48.58  Aligned_cols=52  Identities=23%  Similarity=0.353  Sum_probs=43.4

Q ss_pred             ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCC
Q 013090          337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGY  389 (449)
Q Consensus       337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~  389 (449)
                      .+.|-+...|+||-|+++-..|+++|||+.+.+-...... .+=.||| |..|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~   68 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKR   68 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGG
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccC
Confidence            5788888899999999999999999999999998765444 5558998 56665

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.11  E-value=0.14  Score=39.29  Aligned_cols=51  Identities=12%  Similarity=0.204  Sum_probs=36.5

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCC
Q 013090          259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGS  311 (449)
Q Consensus       259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~  311 (449)
                      .|-|-+..+|+||-|+++...|+++|+|+.+-.---.  ..+-+ .||| +.+|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y-~F~i-d~eg~   68 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEY-EFFT-YLDKR   68 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEE-EEEE-CBCGG
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceE-EEEE-EcccC
Confidence            3555666789999999999999999999876443322  22332 3787 77775

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.05  E-value=0.52  Score=34.50  Aligned_cols=50  Identities=12%  Similarity=0.194  Sum_probs=34.8

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCC
Q 013090          261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGS  311 (449)
Q Consensus       261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~  311 (449)
                      .+.+.-.|+||-|+++...|+++|+|+.+-.---. +..-.=.||| +.+|.
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i-d~~g~   54 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QADSA   54 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EESCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEecC
Confidence            34455679999999999999999999987543323 2211123777 66775

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.87  E-value=0.47  Score=35.66  Aligned_cols=35  Identities=17%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             CceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEE
Q 013090          123 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAE  157 (449)
Q Consensus       123 ~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~  157 (449)
                      .+.+.|+|.|.   ++||++++|..+|+++|+||..-.
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            45678999875   999999999999999999998875