Citrus Sinensis ID: 013102

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLCY
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
msrapvdhstslsRTFKYLLATQflsrgipfvfnSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAdikcdgasREENAAKLLKVAWLTLPLGIFITIGACFFVLWwqglsysnpyAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFgafktsdlfpfrlgnmmSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFlpfeessyatfarsasgqypqkskKIGNSLAEALKLVLLIGLVFmafgpsysYSLVRLLYgkkwsdgeastaLRYYCLYVVVLAMNGTSEAFLHAVATEDQlkrsndslLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLCY
msrapvdhstslsRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFarsasgqypqkSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLCY
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNllllrlrlVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASlflgywgyfllfgafKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLCY
*************RTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA**************GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLC*
****************KYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAD*********ENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSA***********GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLC*
**********SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF*************KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLCY
*********TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIK*****REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLCY
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHii
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MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVWRFLCY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
Q54IV7540 Protein RFT1 homolog OS=D yes no 0.893 0.742 0.350 1e-63
Q0D2E8539 Protein RFT1 homolog OS=X yes no 0.922 0.768 0.35 7e-55
Q8C3B8541 Protein RFT1 homolog OS=M yes no 0.910 0.756 0.331 3e-48
Q96AA3541 Protein RFT1 homolog OS=H yes no 0.910 0.756 0.322 5e-48
Q9Y123556 Protein RFT1 homolog OS=D yes no 0.917 0.741 0.292 2e-41
Q6FPE8551 Oligosaccharide transloca yes no 0.948 0.773 0.313 7e-40
P38206574 Oligosaccharide transloca yes no 0.946 0.740 0.280 3e-39
P40913556 Oligosaccharide transloca yes no 0.951 0.767 0.269 1e-35
O94302527 Oligosaccharide transloca yes no 0.951 0.810 0.284 4e-35
Q754Q7552 Oligosaccharide transloca yes no 0.935 0.760 0.288 1e-33
>sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1 Back     alignment and function desciption
 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 249/453 (54%), Gaps = 52/453 (11%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
           YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct: 20  YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query: 78  KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
             D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct: 80  T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query: 135 ACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
           + +LELL+EP+YIL+QNLLL ++R  VE  A F + F+    IV    +  G++ F  +Q
Sbjct: 138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query: 194 VAYAASLFLGYWGYFLLF--------------GAFKTSD-LFPFRLGNMMSYDKQLANMC 238
           + Y+ +L +GY+GYFL+                 FK+ D LFP +    +  D+ L  + 
Sbjct: 195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFP-KFSTRI--DRNLIKLS 251

Query: 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA 298
            L+T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F 
Sbjct: 252 LLYTWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFP 311

Query: 299 R-------------------------SASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 333
           +                           +       K   N L   +K ++L+ LVF  F
Sbjct: 312 KLFPTINNNNNNNNNNNNNNNNNNKNQENNNNNDDFKNGANVLIVIMKFLILVSLVFTCF 371

Query: 334 GPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSND 393
           GP +S+ L+ LLY  K+ D  A   L +YC+YV  LA+NG SE+F+H+VA EDQLK  N 
Sbjct: 372 GPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFLAINGVSESFVHSVAKEDQLKTVNW 431

Query: 394 SLLVFSVIYIVMNVILIQSAGSVGLILANSLNM 426
            L++   IY++  +I  +   ++G+ILAN LN+
Sbjct: 432 VLIIIGFIYLLFTLIFCKLFQNIGIILANCLNI 464
May be involved in N-linked oligosaccharide assembly.
Dictyostelium discoideum (taxid: 44689)
>sp|Q0D2E8|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1 Back     alignment and function description
>sp|Q8C3B8|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2 Back     alignment and function description
>sp|Q96AA3|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y123|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1 Back     alignment and function description
>sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1 Back     alignment and function description
>sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1 Back     alignment and function description
>sp|P40913|RFT1_KLULA Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2 Back     alignment and function description
>sp|O94302|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1 Back     alignment and function description
>sp|Q754Q7|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
356531685518 PREDICTED: protein RFT1 homolog [Glycine 0.966 0.837 0.786 0.0
356544271518 PREDICTED: LOW QUALITY PROTEIN: protein 0.966 0.837 0.774 0.0
449458359528 PREDICTED: protein RFT1 homolog [Cucumis 0.975 0.829 0.765 0.0
255539823436 Oligosaccharide translocation protein rf 0.951 0.979 0.782 0.0
334187490 611 lipid transporter [Arabidopsis thaliana] 0.971 0.713 0.731 0.0
224138472476 predicted protein [Populus trichocarpa] 0.879 0.829 0.820 0.0
38260621481 nuclear division RFT1-like protein [Sisy 0.879 0.821 0.777 1e-180
297806793478 hypothetical protein ARALYDRAFT_325378 [ 0.879 0.826 0.754 1e-176
38260690478 nuclear division RFT1-like protein [Arab 0.879 0.826 0.751 1e-176
38260636478 nuclear division RFT1-like protein [Arab 0.879 0.826 0.751 1e-176
>gi|356531685|ref|XP_003534407.1| PREDICTED: protein RFT1 homolog [Glycine max] Back     alignment and taxonomy information
 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/435 (78%), Positives = 386/435 (88%), Gaps = 1/435 (0%)

Query: 8   HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREG 67
            +T+LSRTFKYLLATQFLSRGIPF+FN+WIVRHLT+ DYA+YAVQFHL VTC+LFLSREG
Sbjct: 6   DATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLLVTCILFLSREG 65

Query: 68  FRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQ 127
           FRRAC+R D+KCDG+S  +   KL+KV W++ PLGIFITI  C FV WWQ +SYS+P+ Q
Sbjct: 66  FRRACLRMDLKCDGSSMGD-VVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYSSPHGQ 124

Query: 128 AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI 187
           AI INGFAC+LELLAEP+YILSQNL+LL LRL+VETVAT SRC TM  LIVKQ  MEK I
Sbjct: 125 AILINGFACILELLAEPVYILSQNLVLLELRLMVETVATLSRCLTMYFLIVKQTGMEKSI 184

Query: 188 VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247
           +FALSQ AY A LFLGYWGY LL   F+ S LFPFR G M+ +D+QL+ MC LFTFQSFR
Sbjct: 185 IFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKMIDFDQQLSKMCILFTFQSFR 244

Query: 248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQ 307
           KL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASGQYP 
Sbjct: 245 KLILQEGEKIVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYVTFARSASGQYPG 304

Query: 308 KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVV 367
           KSKK+GNSL E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSDGEASTALR YC YV+
Sbjct: 305 KSKKLGNSLTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVI 364

Query: 368 VLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMI 427
           VLAMNGTSEAF+HAVATE QLKRSNDSLL+FS+IYIV+NV+LI+ AG+VGLILANSLNM 
Sbjct: 365 VLAMNGTSEAFMHAVATERQLKRSNDSLLIFSLIYIVLNVMLIRLAGAVGLILANSLNMT 424

Query: 428 LRIIYSAIFIKHYFQ 442
           LRI+YSA FIK+YFQ
Sbjct: 425 LRILYSATFIKNYFQ 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356544271|ref|XP_003540577.1| PREDICTED: LOW QUALITY PROTEIN: protein RFT1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449458359|ref|XP_004146915.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] gi|449520289|ref|XP_004167166.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|255539823|ref|XP_002510976.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis] gi|223550091|gb|EEF51578.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|334187490|ref|NP_196380.5| lipid transporter [Arabidopsis thaliana] gi|332003804|gb|AED91187.1| lipid transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224138472|ref|XP_002326611.1| predicted protein [Populus trichocarpa] gi|222833933|gb|EEE72410.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38260621|gb|AAR15439.1| nuclear division RFT1-like protein [Sisymbrium irio] Back     alignment and taxonomy information
>gi|297806793|ref|XP_002871280.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] gi|297317117|gb|EFH47539.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|38260690|gb|AAR15504.1| nuclear division RFT1-like protein [Arabidopsis arenosa] Back     alignment and taxonomy information
>gi|38260636|gb|AAR15453.1| nuclear division RFT1-like protein [Arabidopsis arenosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
DICTYBASE|DDB_G0288491540 rft1 "RFT1 family protein" [Di 0.616 0.512 0.322 1.5e-58
MGI|MGI:3607791541 Rft1 "RFT1 homolog (S. cerevis 0.461 0.382 0.391 1.3e-51
ZFIN|ZDB-GENE-110411-126540 rft1 "RFT1 homolog (S. cerevis 0.937 0.779 0.317 2.8e-50
RGD|1562654541 Rft1 "RFT1 homolog (S. cerevis 0.915 0.759 0.322 5.2e-49
UNIPROTKB|E1BNC6541 RFT1 "Uncharacterized protein" 0.917 0.761 0.314 1.1e-48
UNIPROTKB|E2RQ01541 RFT1 "Uncharacterized protein" 0.913 0.757 0.317 3.7e-48
UNIPROTKB|Q96AA3541 RFT1 "Protein RFT1 homolog" [H 0.917 0.761 0.318 7.7e-48
UNIPROTKB|F1P5L5535 RFT1 "Uncharacterized protein" 0.910 0.764 0.325 4.2e-47
FB|FBgn0027564556 CG3149 [Drosophila melanogaste 0.481 0.388 0.352 9.3e-43
SGD|S000000116574 RFT1 "Membrane protein require 0.440 0.344 0.365 6e-39
DICTYBASE|DDB_G0288491 rft1 "RFT1 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 361 (132.1 bits), Expect = 1.5e-58, Sum P(2) = 1.5e-58
 Identities = 96/298 (32%), Positives = 154/298 (51%)

Query:    18 YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
             YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct:    20 YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query:    78 KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
               D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct:    80 T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
             + +LELL+EP+YIL+QN         VE  A F + F+    IV    +  G++ F  +Q
Sbjct:   138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query:   194 VAYAASXXXXXXXXXXXXXXX--KTSDLFPF--------RLGNMMS--YDKQLANMCTLF 241
             + Y+ +                 K  D   F        +L    S   D+ L  +  L+
Sbjct:   195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFPKFSTRIDRNLIKLSLLY 254

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
             T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F +
Sbjct:   255 TWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFPK 312
GO:0016021 "integral to membrane" evidence=IEA
GO:0006869 "lipid transport" evidence=IEA
GO:0005319 "lipid transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
MGI|MGI:3607791 Rft1 "RFT1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110411-126 rft1 "RFT1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1562654 Rft1 "RFT1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNC6 RFT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQ01 RFT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96AA3 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5L5 RFT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0027564 CG3149 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000000116 RFT1 "Membrane protein required for translocation of Man5GlcNac2-PP-Dol" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.29.62.1
hypothetical protein (474 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
cd13130441 cd13130, MATE_rft1, Rft1-like subfamily of the mul 0.0
pfam04506533 pfam04506, Rft-1, Rft protein 9e-66
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 4e-08
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 5e-05
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 7e-04
>gnl|CDD|240535 cd13130, MATE_rft1, Rft1-like subfamily of the multidrug and toxic compound extrusion family (MATE) Back     alignment and domain information 
 Score =  565 bits (1459), Expect = 0.0
 Identities = 274/441 (62%), Positives = 319/441 (72%), Gaps = 10/441 (2%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
           S SR FKYL+A Q  SR I FVFN  ++R LT   +  Y++QF LF T VLFLSREGFRR
Sbjct: 1   SSSRGFKYLIAAQLFSRIITFVFNQLLLRFLTPRYFG-YSIQFELFQTTVLFLSREGFRR 59

Query: 71  ACMRADIKCDG-----ASREENAAKLLKVAWLTLPLGIFITIGACFFVLW-WQGLSYSNP 124
           AC+R +    G         E  AK+LK+AW  +P GI  TI  C  VLW  + LSYS P
Sbjct: 60  ACLRINSSGAGITTESNKSGELQAKVLKIAWAIVPGGIISTILGCLVVLWASESLSYSPP 119

Query: 125 YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEME 184
           YA+AI I GFAC+LELL+EPLYILSQNLL  RLR +VET AT  RC T  ILIV     E
Sbjct: 120 YAKAILIYGFACILELLSEPLYILSQNLLKFRLRAIVETAATLVRCLTTFILIVLGTGKE 179

Query: 185 -KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
            K +VFAL Q+AY   LF GYW YFL     K S LFP R  N+M +DK    MC LFT 
Sbjct: 180 PKVLVFALGQLAYGVCLFFGYWYYFLQCFVSKKSSLFPLRNSNLMFFDKPTLRMCGLFTI 239

Query: 244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG 303
           QSF K LL EG+K+VLVW DTPYNQ VY LVD  GSLVVR+VFLPFEESSY TFAR AS 
Sbjct: 240 QSFFKHLLTEGDKIVLVWFDTPYNQGVYALVDNYGSLVVRIVFLPFEESSYTTFARLASE 299

Query: 304 QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYC 363
           + P+  KK+GNSL EALKL   +GLV +AFGPSYSYSL+RLLYG++WSDGEA  AL  YC
Sbjct: 300 KNPKALKKLGNSLTEALKLYSYVGLVAIAFGPSYSYSLLRLLYGERWSDGEAPDALGVYC 359

Query: 364 LYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILA 421
           LY+  LA+NGTSEAFLH+VATE+QL+R N  LLVFSVIY+++NV+LI+  S G+VGLILA
Sbjct: 360 LYIPFLALNGTSEAFLHSVATEEQLQRQNVWLLVFSVIYLILNVLLIRWFSLGAVGLILA 419

Query: 422 NSLNMILRIIYSAIFIKHYFQ 442
           N LNM+LRI YS +FIKHYF+
Sbjct: 420 NILNMLLRIGYSLVFIKHYFK 440

This eukaryotic family may function as a transporter, shuttling phospholipids, lipopolysaccharides or oligosaccharides from cytoplasmic to the lumenal side of the endoplasmic reticulum. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. Length = 441
>gnl|CDD|218119 pfam04506, Rft-1, Rft protein Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 100.0
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 99.97
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.9
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.83
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.8
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.72
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.7
PRK01766456 multidrug efflux protein; Reviewed 99.7
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.69
PRK00187464 multidrug efflux protein NorA; Provisional 99.69
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.54
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.53
PRK10189478 MATE family multidrug exporter; Provisional 99.44
PRK01766 456 multidrug efflux protein; Reviewed 99.28
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.27
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.24
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.23
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.19
PRK10189 478 MATE family multidrug exporter; Provisional 99.14
PRK00187 464 multidrug efflux protein NorA; Provisional 99.05
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 98.78
TIGR01695 502 mviN integral membrane protein MviN. This model re 98.66
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 98.32
PRK15099 416 O-antigen translocase; Provisional 98.27
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 97.99
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.98
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.81
COG0728 518 MviN Uncharacterized membrane protein, putative vi 97.6
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.46
PRK10459 492 colanic acid exporter; Provisional 97.35
COG2244480 RfbX Membrane protein involved in the export of O- 96.28
KOG1347 473 consensus Uncharacterized membrane protein, predic 96.22
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 94.48
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-61  Score=462.16  Aligned_cols=435  Identities=41%  Similarity=0.653  Sum_probs=388.5

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccc
Q 013102            5 PVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASR   84 (449)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~   84 (449)
                      ++++..+..+|+..++.+|+..|+++|+.|.++.|.++||.+|++++.+++++.+++|++||.+|.|.+|.++..+|   
T Consensus         3 s~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d---   79 (530)
T KOG2864|consen    3 SDSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD---   79 (530)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc---
Confidence            45667788888899999999999999999999999999999999999999999999999999999999999877644   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CCchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 013102           85 EENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGL---S-YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV  160 (449)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~  160 (449)
                        +..+..|..|++.+++..+++..+-++..+...   . ..+++...+.+.++++++|.+.||.+...|-.++++.++.
T Consensus        80 --~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i  157 (530)
T KOG2864|consen   80 --TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI  157 (530)
T ss_pred             --cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              566788999999999888887766544444321   1 3455678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHhhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-------ccccCcccccccCC--cccc
Q 013102          161 VETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGY-WGYFLLFG-------AFKTSDLFPFRLGN--MMSY  230 (449)
Q Consensus       161 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~p~~~~~--~~~~  230 (449)
                      .|..+.++++++..+..+..++.+++.+++.+|+.+++..+++| |.|+..++       ..+..+..|+..++  ...+
T Consensus       158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff  237 (530)
T KOG2864|consen  158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF  237 (530)
T ss_pred             HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence            99999999999988888888888899999999999999877644 43333332       12234566665554  4557


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc--cCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchh
Q 013102          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWL--DTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK  308 (449)
Q Consensus       231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~--~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~  308 (449)
                      ++|..+..+.++.|++.|+++|++||+|+...  ++-+|||.|++++|+|++++|.+++||||.++-+|++..+++++|+
T Consensus       238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~  317 (530)
T KOG2864|consen  238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN  317 (530)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence            89999999999999999999999999999954  5667999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHH
Q 013102          309 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL  388 (449)
Q Consensus       309 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~  388 (449)
                      .+++.+.+.+.+|++..+|+.++.||+++++.++.+..|+||.+.+.+..+|+||.|+|++++||++|+|..|.++.+++
T Consensus       318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi  397 (530)
T KOG2864|consen  318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI  397 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence            88888999999999999999999999999999999999999999887889999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013102          389 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVW  444 (449)
Q Consensus       389 ~~~~~~~~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~  444 (449)
                      .++|+.|++.++++++++++++.++|..|.+.||++||.+|+.|++++|++|+++.
T Consensus       398 ~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~  453 (530)
T KOG2864|consen  398 DKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDL  453 (530)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999864

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.95
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.23
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=99.95  E-value=3.2e-25  Score=226.00  Aligned_cols=423  Identities=13%  Similarity=0.060  Sum_probs=289.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhh
Q 013102            8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREEN   87 (449)
Q Consensus         8 ~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~   87 (449)
                      ..+++.+.+.+.+++++.+.+.+++.+.+++| +|||++|.++++..+.. ....+ ..|+..+..+.-.+...++|+++
T Consensus        10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~-~~g~~~~~~~~is~~~g~~~~~~   86 (460)
T 3mkt_A           10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILF-GVGLLMALVPVVAQLNGAGRQHK   86 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHH-HHHHHHHHGGGCTTTTSSSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHcCCChhH
Confidence            46778888999999999999999999999999 99999999999766533 22333 36777777765444322222223


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhH
Q 013102           88 AAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (449)
Q Consensus        88 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~  161 (449)
                      .++..+.. +.....++.++++ .............++.     ...+.+++...++..+.......+|.+.|++.....
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           87 IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            34443332 3333444444333 2221111111112322     134555666667777666666677888888888888


Q ss_pred             HHHHHHHHHHHHHhHHhh-c--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHH
Q 013102          162 ETVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC  238 (449)
Q Consensus       162 ~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~  238 (449)
                      ...+.+.+.+....++.. .  ++ +++.+.+++..+...+..+..+.+..++++.+..+.++...+.+....|+.++++
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            888777777776665432 1  12 4444444444444443332222222211111110111111111223358999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHH
Q 013102          239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE  318 (449)
Q Consensus       239 ~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~  318 (449)
                      .|.+.+++...+..+.|+.+++++ |++++|.|+.++++.+++. .+..++.++..|..++...++|+|+.+   +..++
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~~~---~~~~~  319 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKGAA---IAANV  319 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCTTT---THHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHH
Confidence            999999999999999999999999 9999999999999998876 777789999999999998776655544   46777


Q ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHH
Q 013102          319 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVF  398 (449)
Q Consensus       319 ~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~  398 (449)
                      ..+....+++|...+....+++++.++.+|+.......+++++++...++.+++......+.+.++++.....+   .+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~  396 (460)
T 3mkt_A          320 GLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT---FIS  396 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH---HHH
Confidence            88888888888888888889999998887764322234789999998888888888888888888886644332   344


Q ss_pred             H-HHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013102          399 S-VIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKHYFQV  443 (449)
Q Consensus       399 ~-ii~i~l~~~li~~-------~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~  443 (449)
                      . ++++++++++++.       +|..|+.+|..++..++......+.+|..++
T Consensus       397 ~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  449 (460)
T 3mkt_A          397 YWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ  449 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred             HHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4 7889999999998       9999999999999999988887666655443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00