Citrus Sinensis ID: 013103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MCEKMQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccEEEEEcccccccccccccccEEEEEccccccccccccccccccEEEEEEccccccEEEEEEcccccccccccccHHHHHHHccccccccHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHccccccEEEEccccccccccccccccccccccEEccEEEEEEEcccccccccccEEEEEEEccccccccccEEEEEEEEEccccccEEEcccccccccccHHHHHHcccHHHcccccccEEEEEEccccccccccccEEEEEEEEEccccccccEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccccccccccHHHHHHHcccccEEcccccccccccccccccccccccccccccEEEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccEEEEEccccEccccccccccEEEccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccccccccccHHHcccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHcccccccccEEEEccccccEEEccccccHcccccccccccEEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccEEccccccccHHHHEEEEccccccccEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEEHcccccccccccccccHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MCEKMQLvkhlglrtpiILSVVHGVMGRDALTDEFRevkfqdhedigvnrgictcgqqsgivltvgylpglkvdaipllrrkeivqvpvddtyvdvylappvpmidQFVMDIQNyttsvsgcaspvgiimfgkedmdqkpiIEKLDYAMSMNTVFvgdersrfayrsgddlrnvcgnpafISDAVALVFasdkdkphgtgeIQFHLAMSegvsaigprhkaVSVRAnhaegstwltakreghhvilDGEQILRHIDQLENRFPQVELYVGVTkrrkcsigsekSRLITTLAFhgirggdqeylyvdgvgiktgdyfqfyqpDHNAALAACRNASENirnlklnssgkgflgrrdvansidrkeVLGGFIFsccgrgnsffgglnvdsfpffenfpsaplagifcggeigrgklsmtgqesqeespaerrYLHVYSTAYLVISYSAAPSE
Flexible Loop (DISEMBL)
MCEKMQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLenrfpqvelyvgvtkrrkcsigseksrlITTLafhgirggdQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRnlklnssgkgflgrrDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Low Complexity Region (SEG)
MCEKMQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Disordered region (IsUnstruct)
******LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDK****GTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR******************RYLHVYSTAYLVISY******
Disordered Region (DISOPRED)
****MQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERS************VCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQIL*********FPQVELYVGVTKR*********SRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSG***************KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG******SPAERRYLHVYSTAYLVI*YS*****
Disordered Region (DISEMBL)
MCEKMQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKL*************ERRYLHVYSTAYLVISYSAAPSE
Disordered Region (DISPRO)
MCEKMQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCEKMQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	449	2.2.26 [Sep-21-2011]
Q9FMV0	529	F-box/LRR-repeat protein	yes	no	0.902	0.765	0.411	3e-83

>sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1

 Score =  309 bits (791), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 187/454 (41%), Positives = 259/454 (57%), Gaps = 49/454 (10%)

Query: 1   MCEKMQLV-KHLGLRTPIILSVVHGVMGRDALTDEFREVKFQ---DHEDIGVNRGICTCG 56
           M E + L+ + +G R PII+SVV G++G++A  D+  EV+     D E   V        
Sbjct: 116 MEETLTLITERVGSRVPIIVSVVTGILGKEACNDKAGEVRLHSTSDDELFDV-------- 167

Query: 57  QQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYT 116
               I+LT+GYLPG+KVD IP+++ K                     M D+FVMDI+NY 
Sbjct: 168 ANFAILLTIGYLPGMKVDIIPVIQAKG---------------ESGAEMEDKFVMDIRNYM 212

Query: 117 TSVSG-CASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVC 175
           + VSG  A+P  +I+F ++    +P++ KLDYAM   TV VG +   F ++ G++ RNV 
Sbjct: 213 SMVSGHAAAPACLILFAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRGNEPRNVQ 272

Query: 176 GNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--ST 233
                I     L+FA D+ +P     IQF  A+S G+S++  R+KA +V  +      ST
Sbjct: 273 LQKDDIRVLAGLIFARDRHRPAQAERIQFDTAISNGMSSVDLRYKAANVNVSLGPSCPST 332

Query: 234 WLTAKREGHHVILDGEQILRHIDQ-LENRFPQVELYVGVTKRRKCSIG-SEKSRLITTLA 291
            LTAKR G   +LDG+QIL  ID  LEN   + + Y+GV KRRK SIG  EK +++++L 
Sbjct: 333 LLTAKRRGEAEVLDGDQILDDIDNILENYIWENDSYLGVIKRRKYSIGLEEKPKIMSSLV 392

Query: 292 FHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLG 351
           FH + G D + L VDG GIKTGD FQ Y PD   A AA  + S  +RNLK          
Sbjct: 393 FHQVNGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK---------- 442

Query: 352 RRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 411
                +  ++ EV+GGF F    RG+SFFG  N DS PF ENFP  P  GIFC GEIGR 
Sbjct: 443 -----SKPNKPEVVGGFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGRS 497

Query: 412 KLSMTGQESQEESPAERRYLHVYSTAYLVISYSA 445
            +   G+E +E S   +R+LHVYS+ YL++SY++
Sbjct: 498 LILEEGEEKKEVSI--QRFLHVYSSVYLIVSYTS 529

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
224136205	533	f-box family protein [Populus trichocarp	0.930	0.784	0.544	1e-131
359491092	527	PREDICTED: F-box/LRR-repeat protein At5g	0.942	0.802	0.539	1e-129
147863571	527	hypothetical protein VITISV_019403 [Viti	0.942	0.802	0.536	1e-128
255540189	523	conserved hypothetical protein [Ricinus	0.906	0.778	0.532	1e-125
224122060	551	predicted protein [Populus trichocarpa]	0.928	0.756	0.514	1e-120
118488987	533	unknown [Populus trichocarpa x Populus d	0.928	0.782	0.513	1e-116
224118086	530	predicted protein [Populus trichocarpa]	0.928	0.786	0.516	1e-115
224115878	558	predicted protein [Populus trichocarpa]	0.915	0.736	0.487	1e-108
118484799	342	unknown [Populus trichocarpa]	0.746	0.979	0.575	1e-104
224115874	637	predicted protein [Populus trichocarpa]	0.839	0.591	0.508	1e-103

>gi|224136205|ref|XP_002322271.1| f-box family protein [Populus trichocarpa] gi|222869267|gb|EEF06398.1| f-box family protein [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/443 (54%), Positives = 314/443 (70%), Gaps = 25/443 (5%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVG 66
           L   LG +TPII+S   G+MGRDA+TDE REV  +++   G +         +GI+LTVG
Sbjct: 111 LATKLGFQTPIIVSCTSGIMGRDAVTDEHREVMLEEYWVDGESNPC------NGIILTVG 164

Query: 67  YLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPV 126
           +LPGLKVDAIPL + ++  +                 M+D FVMDI++Y TS+SGCASPV
Sbjct: 165 FLPGLKVDAIPLFQPRKGCRAT---------------MVDNFVMDIKDYATSISGCASPV 209

Query: 127 GIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVA 186
           GIIMFG ED DQKP++EKLD+AMS +T+ +GDER++F YR+G + RN   +  + S AVA
Sbjct: 210 GIIMFGDEDADQKPVMEKLDHAMSSDTIIIGDERAQFLYRNGVESRNDYESSEYFSAAVA 269

Query: 187 LVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLTAKREGHHV 244
           LVFA D+DKP GTGEIQFH A+S GVSA+GPR+KAVSV+   +    +TWLTA+REG H 
Sbjct: 270 LVFARDRDKPCGTGEIQFHAALSSGVSAVGPRYKAVSVKKIVSGTGHTTWLTARREGEHE 329

Query: 245 ILDGEQILRHID-QLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYL 303
           I DG++IL  I+ +L N+    +LY+GVT++R+C IGS+KSR++T L FHG+ GGDQEYL
Sbjct: 330 IQDGQRILDDINNELVNQVGHPDLYIGVTEQRRCFIGSQKSRVMTFLVFHGVMGGDQEYL 389

Query: 304 YVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKE 363
           + DGVGI+TGDYFQFY PD +AAL++C N S+N RNL L+ S +  L  R V +++  KE
Sbjct: 390 FADGVGIRTGDYFQFYHPDPSAALSSCSNVSKNFRNLNLDWSSRNCLHARGVYDNVCNKE 449

Query: 364 VLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEE 423
           ++GGF+FSCCGRG SFF   NVDS PF +NFP  P+AGIFC GEIGRG       E QEE
Sbjct: 450 LVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGFPMAGIFCRGEIGRGFSVFNADEGQEE 509

Query: 424 SPAERRYLHVYSTAYLVISYSAA 446
             +    LHVYS  YL++SY+ A
Sbjct: 510 RTS-HCCLHVYSAVYLLVSYTPA 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491092|ref|XP_002283895.2| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Vitis vinifera] gi|297734433|emb|CBI15680.3| unnamed protein product [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/447 (53%), Positives = 303/447 (67%), Gaps = 24/447 (5%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQ-DHEDIGVNRGICTCGQQSGIVLTV 65
           + K LG  TP+I SV  G++G DA+T+EF+EVK+  D ED  +        +  GIVL V
Sbjct: 100 ITKKLGSATPVITSVARGIIGSDAITEEFKEVKWGVDVEDFNL-----PANKDRGIVLIV 154

Query: 66  GYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASP 125
           G++PGLKVDAIPLLR  E                P + +ID+FVMDI+N++ +VSGC SP
Sbjct: 155 GFMPGLKVDAIPLLRELE---------------EPGISLIDKFVMDIRNFSAAVSGCTSP 199

Query: 126 VGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAV 185
            GI+MFG +  D KP++EK+DYAMSM TV +G+E   F YRSGDD RN+ G+     D V
Sbjct: 200 TGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGDDSRNISGSLKNSCDGV 259

Query: 186 ALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLTAKREGHH 243
           ALVFA D DKP G GE QFH+A+S GV  +GP HKA SV+   + +E STWLTA++EG  
Sbjct: 260 ALVFARDNDKPQGVGETQFHVALSTGVVPVGPTHKAASVKVKGDGSERSTWLTARKEGLK 319

Query: 244 VILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY 302
             LDGE++L  I D++EN     +LY+GVTKRRKCSIGSEK R +TTL FH + GGD+EY
Sbjct: 320 EALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRWVTTLEFHDVLGGDEEY 379

Query: 303 LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRK 362
           L+VDGVGIKTGD F+FY+ D + AL++CR+ SE  RNLK   + K     R VA+  D+ 
Sbjct: 380 LFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTHKNSYHFRGVADGGDKT 439

Query: 363 EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQE 422
           EV GG IFSC GRG+SFFG  NVDS PF ENFP  PLAGI CGGEIGR  LS    +  +
Sbjct: 440 EVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPLAGIMCGGEIGRVHLSSADHQGGQ 499

Query: 423 ESPAERRYLHVYSTAYLVISYSAAPSE 449
           E  + R YLH YST YLVIS++ +  E
Sbjct: 500 EESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863571|emb|CAN79767.1| hypothetical protein VITISV_019403 [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/447 (53%), Positives = 302/447 (67%), Gaps = 24/447 (5%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQ-DHEDIGVNRGICTCGQQSGIVLTV 65
           + K LG  TP+I SV  G++G DA+T+EF+EVK+  D ED  +        +  GIVL V
Sbjct: 100 ITKKLGSATPVITSVARGIIGSDAITEEFKEVKWGVDVEDFNL-----PANKDRGIVLIV 154

Query: 66  GYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASP 125
           G++PGLKVDAIPLLR  E                P + +ID+FVMDI+N++ +VSGC SP
Sbjct: 155 GFMPGLKVDAIPLLRELE---------------EPGISLIDKFVMDIRNFSAAVSGCTSP 199

Query: 126 VGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAV 185
            GI+MFG +  D KP++EK+DYAMSM TV +G+E   F YRSGDD RN+ G+     D V
Sbjct: 200 TGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGDDSRNISGSLKNSCDGV 259

Query: 186 ALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLTAKREGHH 243
           ALVFA D DKP G GE QFH+A+S GV  +GP  KA SV+   + +E STWLTA++EG  
Sbjct: 260 ALVFARDNDKPQGVGESQFHVALSTGVVPVGPTLKAASVKVKGDGSERSTWLTARKEGLK 319

Query: 244 VILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY 302
             LDGE++L  I D++EN     +LY+GVTKRRKCSIGSEK R +TTL FH + GGD+EY
Sbjct: 320 EALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRWVTTLEFHDVLGGDEEY 379

Query: 303 LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRK 362
           L+VDGVGIKTGD F+FY+ D + AL++CR+ SE  RNLK   + K     R VA+  D+ 
Sbjct: 380 LFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTHKNSYHFRGVADGGDKT 439

Query: 363 EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQE 422
           EV GG IFSC GRG+SFFG  NVDS PF ENFP  PLAGI CGGEIGR  LS    +  +
Sbjct: 440 EVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPLAGIMCGGEIGRVHLSSADHQGGQ 499

Query: 423 ESPAERRYLHVYSTAYLVISYSAAPSE 449
           E  + R YLH YST YLVIS++ +  E
Sbjct: 500 EESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540189|ref|XP_002511159.1| conserved hypothetical protein [Ricinus communis] gi|223550274|gb|EEF51761.1| conserved hypothetical protein [Ricinus communis]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/447 (53%), Positives = 306/447 (68%), Gaps = 40/447 (8%)

Query: 9   KHLGLRTPIILSVVHGVMGRDALTDE-----FREVKFQDHEDIGVNRGICTCGQQSGIVL 63
           +  G RTP+I++  +G+MGRDA+T+E     +      D E + +N         SG +L
Sbjct: 106 RKFGSRTPLIVTWANGIMGRDAVTNEDDSSNYDGDGDGDDEHMEIN---------SGFLL 156

Query: 64  TVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCA 123
           TVG++PGLKVD IP LR+                   P+ MID FVMDI+NYTTS SGC 
Sbjct: 157 TVGFVPGLKVDVIPYLRKIR---------------PAPMEMIDIFVMDIRNYTTSASGCT 201

Query: 124 SPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISD 183
           SPVGIIMF  ED D KPI+EKLDYAMS  T+ VGDER++F YRS  D      NP   + 
Sbjct: 202 SPVGIIMFASEDFDLKPIMEKLDYAMSKETIIVGDERTKFLYRSRID----STNP--FAK 255

Query: 184 AVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHH 243
           A+ALVFA D++KPHG GEIQFH A+S GVSAIGPR+K  S R    + +TWLTA++EG  
Sbjct: 256 AIALVFAKDREKPHGLGEIQFHAALSNGVSAIGPRYKTASAREAFHDRNTWLTARQEGQP 315

Query: 244 VILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY 302
            ILDG++IL  I D+LENR    +LY+GVT+ RK  I  EK RL+++L+F+G+ GGD+EY
Sbjct: 316 EILDGQRILNDINDELENRIGDTDLYIGVTELRKRRIRKEKPRLMSSLSFYGVMGGDEEY 375

Query: 303 LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRK 362
           L+V G+GI+T DYFQFY  D +AAL++CRN S N+RNL+L+ S K +L   D AN   +K
Sbjct: 376 LFVHGIGIRTADYFQFYHSDPSAALSSCRNVSANLRNLRLDWSCKKYLYPTDGANEF-KK 434

Query: 363 EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTGQESQ 421
           E +GGFIFSCCGRG +FFG  NVDS PF ENFP  PLAGIFCGGEIGR   +S T  + +
Sbjct: 435 ECIGGFIFSCCGRGEAFFGSPNVDSSPFLENFPGVPLAGIFCGGEIGRSFSISNTLDDRE 494

Query: 422 EESPAERRYLHVYSTAYLVISYSAAPS 448
           E +P+  R LHV+S+ YLV+SY+ +P+
Sbjct: 495 ESTPS--RCLHVFSSVYLVLSYTPSPA 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122060|ref|XP_002318743.1| predicted protein [Populus trichocarpa] gi|222859416|gb|EEE96963.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/470 (51%), Positives = 314/470 (66%), Gaps = 53/470 (11%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVG 66
           L   LG +TPII+S   G+MGRDA+T E REV  +++   G +    +C    GI+LTVG
Sbjct: 107 LATKLGSQTPIIVSCASGIMGRDAVTGEHREVMLEEYWADGES---ISC---FGIILTVG 160

Query: 67  YLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPV 126
           +LPGLKVD IPLL+ ++ V  P               ++D FVM+I++Y  SVSG ASP 
Sbjct: 161 FLPGLKVDVIPLLQPRK-VHRPA--------------LVDYFVMNIRDYAASVSGWASPA 205

Query: 127 GIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVA 186
           GII+FG E  DQKP++EKLD+AMS +TV VGDER++F YRSG + RN  G+  +   AVA
Sbjct: 206 GIILFGDEGADQKPVMEKLDHAMSRDTVIVGDERAQFLYRSGVESRNDYGSSEYFPAAVA 265

Query: 187 LVFASDKDKPHG---------------------TGEIQFHLAMSEGVSAIGPRHKAVSVR 225
           LVFA D+DKP G                     TGEIQFH A+S GVSAIGPR+KAVSVR
Sbjct: 266 LVFARDRDKPCGIGLLISVFAISSFATKMDWQCTGEIQFHAALSSGVSAIGPRYKAVSVR 325

Query: 226 ANHAEG--STWLTAKREGHHVILDGEQILRHID-QLENRFPQVELYVGVTKRRKCSIGSE 282
              +E   +T LTA+REG   I DG++IL  I+ +L N+  + +LY+GVT++RKC IGSE
Sbjct: 326 KIGSETGCTTLLTARREGEQEIQDGQRILDDINNELVNQIGRPDLYIGVTEQRKCFIGSE 385

Query: 283 KSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKL 342
           KSR++T L FHG+ GGDQEYL+ DGVGI+TGDYFQFY  D   AL++C   S+N R LKL
Sbjct: 386 KSRVMTFLVFHGVMGGDQEYLFADGVGIRTGDYFQFYHSDPTTALSSCNEVSKNFRKLKL 445

Query: 343 NSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGI 402
           + S +  L +  V++++  KE++GGF+FSCCGRG SFF   NVDS PF +NFP  P+AG+
Sbjct: 446 DWSSRNCL-QAGVSDNVCSKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGVPMAGV 504

Query: 403 FCGGEIGRGKLSMTGQESQEESPAERRY---LHVYSTAYLVISYSAAPSE 449
           FC GEIGRG   +      +E P ER     LHVYSTAYL++SY+ AP+E
Sbjct: 505 FCRGEIGRGFSVLNA----DEGPEERTLHCCLHVYSTAYLLVSYTPAPAE 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488987|gb|ABK96301.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/448 (51%), Positives = 295/448 (65%), Gaps = 31/448 (6%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVG 66
           L   LG +TPII+S   G+MGRDA+TDE++EV  +D    G +          GI+L+VG
Sbjct: 111 LAAKLGSKTPIIVSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIMLSVG 164

Query: 67  YLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPV 126
           +LPGLKVDAIPLLR ++               A  V M+D+FVMDI+NY   VS   SP 
Sbjct: 165 FLPGLKVDAIPLLRPRK---------------ARGVAMVDKFVMDIRNYAALVSDSTSPS 209

Query: 127 GIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FISDA 184
            IIMFG E  DQKP++EKLD+AMS  T+ VGDER++F YRSG + RNV       + SDA
Sbjct: 210 LIIMFGSEKTDQKPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDHYFSDA 269

Query: 185 VALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGH 242
           VALVFA D+++P GTGEI FH A+S GVSAIGPR KAVS     +E   STWLT +RE  
Sbjct: 270 VALVFARDQNRPSGTGEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLTVRREAE 329

Query: 243 HVILDGEQILRHIDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQE 301
             IL G++I   ID + N    Q +L++GV+++RKC +G EK R + +LAFH + GGD+E
Sbjct: 330 QEILGGQRI---IDDINNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGGDEE 386

Query: 302 YLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDR 361
           +L+VDGVGIKTGDYF  Y PD +AAL++C N S+N RNLKL+ S +    +   A  +  
Sbjct: 387 HLFVDGVGIKTGDYFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRS--CQLHAARGVGE 444

Query: 362 KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQ 421
           KEV+GGF+F+C GRG SFFG  NVDS PF +NFP   +AGIF  GEIGRG   +   ES 
Sbjct: 445 KEVIGGFVFACWGRGESFFGHNNVDSSPFLDNFPGVLMAGIFTYGEIGRGFSILNTDESG 504

Query: 422 EESPAERRYLHVYSTAYLVISYSAAPSE 449
           +E       +HVYST YL++SY+ AP E
Sbjct: 505 QEVKTLCFCVHVYSTVYLLVSYTPAPIE 532

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118086|ref|XP_002331554.1| predicted protein [Populus trichocarpa] gi|222873778|gb|EEF10909.1| predicted protein [Populus trichocarpa]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/449 (51%), Positives = 296/449 (65%), Gaps = 32/449 (7%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVG 66
           L   LG +TPII+S   G+MGRDA+TDE++EV  +D    G +          GI+L VG
Sbjct: 107 LAAKLGSKTPIIVSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIMLAVG 160

Query: 67  YLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPV 126
           +LPGLKVDAIPLLR ++               A  V M+D+FVMDI+NY   VS   SP 
Sbjct: 161 FLPGLKVDAIPLLRPRK---------------AQGVAMVDKFVMDIRNYAALVSDSTSPS 205

Query: 127 GIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FISDA 184
            IIMFG E  DQKP++EKLD+AMS  T+ VGDER++F YRSG + RNV       + SDA
Sbjct: 206 LIIMFGSEKTDQKPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDQYFSDA 265

Query: 185 VALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGH 242
           VALVFA D+++P GTGEI FH A+S GVSAIGPR KAVS     +E   STWL+ +REG 
Sbjct: 266 VALVFARDQNRPSGTGEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLSVRREGG 325

Query: 243 HVILDGEQILRHIDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQE 301
             IL G++I   ID + N    Q +L++GV+++RKC +G EK R + +LAFH + GGD E
Sbjct: 326 QEILGGQRI---IDDINNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGGDVE 382

Query: 302 YLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDR 361
           +L+VDGVGIKTGDYF  Y PD +AAL++C N S+N RNLKL+ S +    +   A  +  
Sbjct: 383 HLFVDGVGIKTGDYFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRS--CQLHAARGVGE 440

Query: 362 KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTGQES 420
           KEV+GGF+F+C GRG SFFG  NVDS PF +NFP  P+AGIF  GEIGRG  +  T  ES
Sbjct: 441 KEVIGGFVFACWGRGESFFGHSNVDSSPFLDNFPGVPMAGIFTYGEIGRGFSILNTDFES 500

Query: 421 QEESPAERRYLHVYSTAYLVISYSAAPSE 449
            +E       +HVYST YL++SY+ AP E
Sbjct: 501 GQEDKTLCFCVHVYSTVYLLVSYTPAPIE 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115878|ref|XP_002317147.1| predicted protein [Populus trichocarpa] gi|222860212|gb|EEE97759.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/449 (48%), Positives = 291/449 (64%), Gaps = 38/449 (8%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDH--EDIGVNRGICTCGQQSGIVLT 64
           L   LG +TPII+S  +G++GRDA+TDE +EV  +D   +    N G        G++LT
Sbjct: 137 LAAKLGSKTPIIVSCANGIIGRDAVTDEHQEVMLEDFWADAASKNSGF-------GVLLT 189

Query: 65  VGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCAS 124
           VG+LPGL+V+AIPLLR ++               A  + ++D+FVMDI+NY  +VSG  S
Sbjct: 190 VGFLPGLQVEAIPLLRPRKA--------------ASRMALVDKFVMDIRNYAANVSGSTS 235

Query: 125 PVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGN-PAFISD 183
           P  +IMFG E  +QKP++EKLD+AMS  T   GDER++F Y+SG + RNV G+   +ISD
Sbjct: 236 PALVIMFGGEKAEQKPVMEKLDHAMSRETFIAGDERAQFLYKSGIESRNVHGSGNEYISD 295

Query: 184 AVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREG 241
           AV LVFA D+ +    GEIQFH A+S GVS IGPR+K VSV+    E   +T L A+REG
Sbjct: 296 AVVLVFARDRHRASDVGEIQFHSALSSGVSTIGPRYKVVSVKEIQPETDLTTCLKARREG 355

Query: 242 HHVILDGEQILRHIDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQ 300
              IL G++I   ID + N    + EL++GV+K+R+C IGSE  +L+ +LAFH ++GGD 
Sbjct: 356 EQEILGGQRI---IDDINNELVNKTELFIGVSKQRQCVIGSENPKLLRSLAFHEVKGGDG 412

Query: 301 EYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSID 360
           E+L+V G GI +GDYF FY  D  AAL+A  N S+N RNLKL+ S          A  + 
Sbjct: 413 EHLFVSGDGIGSGDYFHFYHSDSKAALSATSNVSKNFRNLKLDWSSSQLH-----AGGVG 467

Query: 361 RKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG--KLSMTGQ 418
            KEV+GG +FSC GRG SFFG  NVDS PF +NFP  P+AGIFC GE+GRG   L+    
Sbjct: 468 SKEVVGGLVFSCWGRGESFFGHSNVDSSPFLDNFPGIPMAGIFCYGEVGRGFTMLNADDH 527

Query: 419 ESQEESPAERRYLHVYSTAYLVISYSAAP 447
           E QEE  +    LHVYST Y+++SY+ AP
Sbjct: 528 EDQEEKTS-CCCLHVYSTIYVLVSYTPAP 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484799|gb|ABK94267.1| unknown [Populus trichocarpa]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/346 (57%), Positives = 255/346 (73%), Gaps = 11/346 (3%)

Query: 110 MDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGD 169
           M+I++Y  SVSG ASP GII+FG E  DQKP++EKLD+AMS +TV VGDER++F YRSG 
Sbjct: 1   MNIRDYAASVSGWASPAGIILFGDEGADQKPVMEKLDHAMSRDTVIVGDERAQFLYRSGV 60

Query: 170 DLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHA 229
           + RN  G+  +   AVALVFA D+DKP GTGEIQFH A+S GVSAIGPR+KAVSVR   +
Sbjct: 61  ESRNDYGSSEYFPAAVALVFARDRDKPCGTGEIQFHAALSSGVSAIGPRYKAVSVRKIGS 120

Query: 230 EG--STWLTAKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRL 286
           E   +T LTA+REG   I DG++IL  I ++L N+  + +LY+GVT++RKC IGSEKSR+
Sbjct: 121 ETGCTTLLTARREGEQEIQDGQRILDDINNELVNQIGRPDLYIGVTEQRKCFIGSEKSRV 180

Query: 287 ITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSG 346
           +T L FHG+ GGDQEYL+ DGVGI+TGDYFQFY  D   AL++C   S+N R LKL+ S 
Sbjct: 181 MTFLVFHGVMGGDQEYLFADGVGIRTGDYFQFYHSDPTTALSSCNEVSKNFRKLKLDWSS 240

Query: 347 KGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGG 406
           +  L +  V++++  KE++GGF+FSCCGRG SFF   NVDS PF +NFP  P+AG+FC G
Sbjct: 241 RNCL-QAGVSDNVCSKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGVPMAGVFCRG 299

Query: 407 EIGRGKLSMTGQESQEESPAERRY---LHVYSTAYLVISYSAAPSE 449
           EIGRG   +      +E P ER     LHVYSTAYL++SY+ AP+E
Sbjct: 300 EIGRGFSVLNA----DEGPEERTLHCCLHVYSTAYLLVSYTPAPAE 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115874|ref|XP_002317146.1| predicted protein [Populus trichocarpa] gi|222860211|gb|EEE97758.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/409 (50%), Positives = 273/409 (66%), Gaps = 32/409 (7%)

Query: 7   LVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVG 66
           L   LG +TPII+S  +G++GRDA+T E +EV     ED  V+      G   G++LTVG
Sbjct: 108 LAAKLGSKTPIIVSCTNGIIGRDAVTSEHKEVML---EDFWVDAASKNSG--FGMLLTVG 162

Query: 67  YLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPV 126
           YLPGLKV+A+PLLR ++               A PV MID FVMDI+NY+ SVSG  SP 
Sbjct: 163 YLPGLKVEALPLLRPRK---------------AGPVAMIDNFVMDIKNYSASVSGSTSPA 207

Query: 127 GIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA-FISDAV 185
            IIMFG E+ D KP++EKLD+AMS  T+  G  RS+F YR G + RN+ G+   + +DAV
Sbjct: 208 LIIMFGGEEADLKPVMEKLDHAMSRETIIAGGMRSQFLYRRGIESRNIYGSSTKYFTDAV 267

Query: 186 ALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHH 243
           ALVFA D+DKP G G+IQFH A+S GVSAIGPR+KAVSV+   +E   +TWLT++REG  
Sbjct: 268 ALVFARDEDKPSGEGKIQFHSAISSGVSAIGPRYKAVSVKETQSETGLTTWLTSRREGEQ 327

Query: 244 VILDGEQILRHID-QLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY 302
            IL G+ I+  I+ +L N+    EL++GV+K+R+  IGSE  +L+ +LA H ++GGD E+
Sbjct: 328 EILGGQMIIDSIESELVNK---TELFIGVSKQRQSVIGSENPKLLRSLALHQVKGGDGEH 384

Query: 303 LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRK 362
           L+V G GI +GDYF FY  D  AAL+A  N S+  RNLKL+     +   +  A  +  K
Sbjct: 385 LFVSGDGIGSGDYFHFYHSDPKAALSATSNVSKYFRNLKLD-----WRSCQLHAGDVGSK 439

Query: 363 EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 411
           EV+GG +FSC GRG SFFG  NVDS PF +NFP  P+AGIF  GE+GRG
Sbjct: 440 EVVGGLVFSCWGRGASFFGHSNVDSSPFLDNFPGIPMAGIFGCGEVGRG 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
UNIPROTKB|H3BTR7	78	FBXO22 "F-box only protein 22"	0.111	0.641	0.442	6.5e-05

UNIPROTKB|H3BTR7 FBXO22 "F-box only protein 22" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query:   367 GFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG 417
             GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG  ++ +TG
Sbjct:    18 GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRI-VTG 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      449       449   0.00092  118 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  261 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.19u 0.10s 34.29t   Elapsed:  00:00:02
  Total cpu time:  34.19u 0.10s 34.29t   Elapsed:  00:00:02
  Start:  Mon May 20 21:55:28 2013   End:  Mon May 20 21:55:30 2013

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017954001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (526 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	449
pfam10442	137	pfam10442, FIST_C, FIST C domain	6e-11
COG4398	389	COG4398, COG4398, Uncharacterized protein conserve	8e-08

>gnl|CDD|220757 pfam10442, FIST_C, FIST C domain

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 310 IKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFI 369
           +  G+  Q    D    +   R A E  R                       +   G  +
Sbjct: 56  VPEGEELQLMLRDAEDLIEDLRRALEAARE--------------------GGRPPAGALL 95

Query: 370 FSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 411
           FSC GRG   FG  + +     E    AP+ G F  GEIG G
Sbjct: 96  FSCIGRGLLLFGEPDEELEAVREVLGDAPVIGFFTYGEIGPG 137

The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids. Length = 137

>gnl|CDD|226833 COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 365 LGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 409
           +G  +F+C GRG   FG  + D+    E     PLAG F  GEIG
Sbjct: 323 VGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIG 367

Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	449
COG4398	389	Uncharacterized protein conserved in bacteria [Fun	100.0
COG3287	379	Uncharacterized conserved protein [Function unknow	99.9
PF10442	136	FIST_C: FIST C domain; InterPro: IPR019494 This en	99.76
PF08495	198	FIST: FIST N domain; InterPro: IPR013702 The FIST	99.54

>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=8.2e-51  Score=396.83  Aligned_cols=254  Identities=24%  Similarity=0.318  Sum_probs=220.1

Q ss_pred             cEEEEecCC-CCChhHHHHHhhhhcCCCceeeccc-ccccccccCCCCcceeCCCceecCeEEEEEecCCCCCCCCCCeE
Q 013103          126 VGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDE-RSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQ  203 (449)
Q Consensus       126 ~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~-agd~~f~~g~~sr~~~~~~~~~~gaVal~f~~d~~~~~~~G~i~  203 (449)
                      ...|++.|+ ++....++++|+.++|..+ ++||. +|.   +.+.+.|.+...+.+.++.|||.+         .| ++
T Consensus       126 ~~~ilL~dp~t~~~n~li~~l~~~~Pgtt-vvGG~~Sgg---~~~G~~~Lf~~~~~~~~G~vGv~L---------~G-i~  191 (389)
T COG4398         126 DLHLLLPDPYTFPSNLLIEHLNTDLPGTT-VVGGVVSGG---RRRGDTRLFRDHDVLTSGVVGVRL---------PG-IR  191 (389)
T ss_pred             CceEEccCCcccchHHHhhccCcCCCCce-EEccEeecC---ccCCceEEeecCCcccCceeEEee---------cc-ce
Confidence            355678998 9999999999999999764 55664 443   233344444444588888999999         66 99


Q ss_pred             EEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCcccccCChhHhhhhh-------HhhccCCCcceeEEEEeccc
Q 013103          204 FHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHID-------QLENRFPQVELYVGVTKRRK  276 (449)
Q Consensus       204 ~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~-------e~~~~l~~~~L~iGva~~~~  276 (449)
                      ..+.|+|||||||.+|.||     ++++|+|         .||+++|-|..|.       +.+++|.+++|++|+++++.
T Consensus       192 l~~vVsQGCRPIGeP~iVt-----~a~~niI---------tEl~gr~PL~~Lr~ii~~lsp~er~L~~~~L~iGi~~DE~  257 (389)
T COG4398         192 LVPVVSQGCRPIGEPYIVT-----GADGNII---------TELGGRPPLQRLREIVEGLSPDERALVSHGLQIGIVVDEH  257 (389)
T ss_pred             ecchhccCcccCCCceEee-----ccCceeE---------eecCCCChHHHHHHHhhccChhhHHHHhcCceEEEEehhh
Confidence            9999999999999999995     9999999         8888888887444       45889999999999999998


Q ss_pred             ccCCCCCceeEEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013103          277 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA  356 (449)
Q Consensus       277 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~  356 (449)
                      +....+++|+||.+++.|+.+|+    |.+++-|++|+++||++||++++..||+-..+..   .+++            
T Consensus       258 ~~~~~qGDFlIR~lLG~DPs~Ga----IaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---~~e~------------  318 (389)
T COG4398         258 LAAPGQGDFLIRGLLGADPSTGA----IAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---AAEL------------  318 (389)
T ss_pred             hcCCCCCceEeeeccccCCCCCc----eeecceeccCcEEEEEEcccccchhHHHHHHHHH---HhhC------------
Confidence            87777899999999999999999    9999999999999999999999998777655444   2232            


Q ss_pred             CccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013103          357 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST  436 (449)
Q Consensus       357 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~  436 (449)
                          ...++|||||||+|||..|||.+|+|+++|.+.||++|++||||+|||||     +++         +|+|||||+
T Consensus       319 ----~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g---------r~~LHG~Ts  380 (389)
T COG4398         319 ----PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG---------RNALHGFTA  380 (389)
T ss_pred             ----CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc---------hhhhhccce
Confidence                35789999999999999999999999999999999999999999999999     999         999999999


Q ss_pred             EEEeeecC
Q 013103          437 AYLVISYS  444 (449)
Q Consensus       437 v~~l~se~  444 (449)
                      ++++|.++
T Consensus       381 ~~ai~~~~  388 (389)
T COG4398         381 SMALFVDD  388 (389)
T ss_pred             eeEEEeec
Confidence            99999875

>COG3287 Uncharacterized conserved protein [Function unknown]

Probab=99.90  E-value=5.3e-23  Score=210.44  Aligned_cols=245  Identities=17%  Similarity=0.200  Sum_probs=187.1

Q ss_pred             CCcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCC
Q 013103          124 SPVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTG  200 (449)
Q Consensus       124 ~p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G  200 (449)
                      .+.-.|.|-|+ +.-.+.+++++..+....+||.||.+|| +.|.++    .++.++.+.++ ||-++|         ++
T Consensus       128 r~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~t----~v~~~g~v~~~aavi~l~---------~t  194 (379)
T COG3287         128 RPVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFERT----YVFDEGEVHEDAAVILLF---------GT  194 (379)
T ss_pred             CceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCCCCccceE----EEEEccccccCceEEEEe---------cc
Confidence            34778899999 4446667776777778889999999999 799876    66778888888 555556         99


Q ss_pred             CeEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCcccccCChhHhhhhhHh-h--ccCCC-cceeEEEEeccc
Q 013103          201 EIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQL-E--NRFPQ-VELYVGVTKRRK  276 (449)
Q Consensus       201 ~i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~e~-~--~~l~~-~~L~iGva~~~~  276 (449)
                      .+.|+++.++||.|.+.+++||     |+++|+|         +||||+||.+.+.+. .  ++++. ...-.++...+.
T Consensus       195 ~l~f~~~~~~g~~Pt~~~~~VT-----ka~~~vV---------~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~pl~~~~~  260 (379)
T COG3287         195 QLKFGHGFAHGFVPTDKTGVVT-----KADGDVV---------YEIDGEPAAEEYAEVVGAVEELDPEMFIPNPLGVRDL  260 (379)
T ss_pred             eEEeecccccceEEccceEEEE-----eecCcEE---------EEeCCCcHHHHHHHHhCchhhcChhHhcccceEEEeC
Confidence            9999999999999999999996     8899999         999999999955544 2  34332 222234433331


Q ss_pred             ccCCCCCceeEEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013103          277 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA  356 (449)
Q Consensus       277 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~  356 (449)
                           ...+++|.+.++|++++.    +.+-..++.|..++++....  ...+++++   ++.+..++            
T Consensus       261 -----~~~y~vr~p~~~~e~~~~----~f~~~~i~~~v~lr~~~~~~--~~~~~e~~---~~~a~~~~------------  314 (379)
T COG3287         261 -----GPLYYVRAPQFVDEEGGL----IFLSAAIPLGVVLRLGETGG--IERVTERA---LRRAFEDL------------  314 (379)
T ss_pred             -----CCcEEEeCcceeccccce----EEeeccCCCccEEEeecCCc--ccHHHHHH---HHHHHhhc------------
Confidence                 567999999999988554    55556999999999998655  33222222   22223322            


Q ss_pred             CccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013103          357 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST  436 (449)
Q Consensus       357 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~  436 (449)
                          ++++.+-|.|+|++|  .++-+.+.+.+.+++.+|.=|++|||||||++|.    . +         -+..||+|.
T Consensus       315 ----~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~~----~-g---------~~~h~Nqtf  374 (379)
T COG3287         315 ----PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGPI----T-G---------ENVHHNQTF  374 (379)
T ss_pred             ----cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceeccccccccccc----c-c---------cceeeeeEE
Confidence                334899999999999  6777999999999999996699999999999993    3 5         589999998


Q ss_pred             EEEee
Q 013103          437 AYLVI  441 (449)
Q Consensus       437 v~~l~  441 (449)
                      +-..|
T Consensus       375 ~~v~f  379 (379)
T COG3287         375 VGVAF  379 (379)
T ss_pred             EEEeC
Confidence            76553

>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes

Probab=99.76  E-value=1.8e-18  Score=152.99  Aligned_cols=98  Identities=23%  Similarity=0.308  Sum_probs=85.6

Q ss_pred             EEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeE
Q 013103          287 ITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLG  366 (449)
Q Consensus       287 vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~g  366 (449)
                      +|.++.+|+.+|+    |+++.+|++|+.||||.+|++.+.++++++++++       .               ..+|.+
T Consensus        37 ir~~~~~~~~~gs----l~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~~   90 (136)
T PF10442_consen   37 IRSPLAIDPEDGS----LTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPEG   90 (136)
T ss_pred             EeeeeEEcCCCCE----EEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCceE
Confidence            9999999998999    9999999999999999999999997666544433       1               357999


Q ss_pred             EEEEEeCCCCcCCCCCCccchHhHHhhCCC-CceeeeecccccCC
Q 013103          367 GFIFSCCGRGNSFFGGLNVDSFPFFENFPS-APLAGIFCGGEIGR  410 (449)
Q Consensus       367 aLlFSC~GRG~~lfg~~~~E~~~v~e~lp~-vPlaGFy~~GEIgP  410 (449)
                      +|+|+|+||...|....+.|++.+++.+|+ +|++||||||||+|
T Consensus        91 ~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~  135 (136)
T PF10442_consen   91 ALIFSCIGRRLFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP  135 (136)
T ss_pred             EEEEECCCCHHHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence            999999999555544788999999999995 99999999999998

The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya

Probab=99.54  E-value=5.4e-14  Score=130.26  Aligned_cols=99  Identities=22%  Similarity=0.361  Sum_probs=86.0

Q ss_pred             CcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCCC
Q 013103          125 PVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTGE  201 (449)
Q Consensus       125 p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G~  201 (449)
                      ...+++|.|+ +.+.++++++|.......++|+||.+|+ ..|.++    .++.++.+.++ +|+++|         .++
T Consensus        97 ~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a~~~~~~~~~----~v~~~~~~~~~g~v~~~~---------~~~  163 (198)
T PF08495_consen   97 SPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSAGDNLDFERT----YVFANGQVYSDGAVVVAF---------SGS  163 (198)
T ss_pred             CcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEECCCCCcCCce----EEEEeeeeccCcEEEEEE---------cCC
Confidence            4678899998 8889999999988889999999999998 556554    66654455555 999999         679


Q ss_pred             eEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCcccccCChh
Q 013103          202 IQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQ  250 (449)
Q Consensus       202 i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~p  250 (449)
                      +++.+.+.|||+|+|.+++||     ++++|+|         +|||++|
T Consensus       164 l~~~~~~~~g~~p~g~~~~VT-----~a~~~~I---------~eld~~P  198 (198)
T PF08495_consen  164 LKIDSFVSHGWEPIGKPMTVT-----KAEGNII---------YELDGRP  198 (198)
T ss_pred             ceEEEEEecCeEeCCCCEEEE-----EecCCEE---------EEECCcC
Confidence            999999999999999999996     8899999         9999998

Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00