Citrus Sinensis ID: 013104

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV
ccccccccccccccccccccccccccccccccccccEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEcccccccccHHHHcccccHHHHHHHHHHcccEEEccccHHHHHHccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHccccEEEHHHHHHHHHHccccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccc
cccEccccccEEEEEcccccccccccccccccccEEEEEcccEEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccccEEEEEEHHHccHHHHHHHHHHEccccEEEEcHHHHHHccccEccccccccccccEEccEEEcccccccccccHHHHHHHHHHHHcccccHHHEEEEEEEEEEEccccHHHccccHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHccccEEEHHHHHHHHHHHHHHEEEEEEEccccccccEEEEEEEEEccccEEEEEEEccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHccccHHHHHHHccccHcHHHccccEEEEc
MSTSNLYCSSMALLvrepqggsclhfvkpfsadgclsiknvgrIKTAALVsgegdvisypnnnkkytaietqsdtigfgtlgaeitpktsdffpnddefdldrptkgfASISEAIEDIRQGKLVIVVddedrenegdlimaaslvtPEAMAFIVRHGTGIVcvsmkgedlerlelplmvnhkdneEKLCTAFTVsvdakygtttgvsanDRAKTVLALAcrdskpedfnrpghifplkyreggvlkraghteaSVDLAVLAGLEPVAVLCEIvdddgsmarlpkLRQFAQTENLKIISIADLIRYRRKRDRLVELAaaapiptmwgpfkaHCYRSLLDGIEHIAMVkgeigdgqDILVRVHSecltgdifgsarcdCGNQLALAMKQIEAAGRGVLVYLRghegrgiglghklraynlqddghdtveaneelglpvdsreygigaqlkv
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALvsgegdvisypnNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEaiedirqgklVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVsvdakygtttgvsandraKTVLALAcrdskpedfnrpghifpLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLrqfaqtenlkiisiadliRYRRKRDRLVELAAaapiptmwgpfKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANeelglpvdsreygigaqlkv
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV
*****LYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFP****FDL***TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDS**EDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQD*****************************
***********************************L***NVGRI***************************************************************FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV
*STSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPN******************T*GAEITP*TSDFFP****FDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
P47924543 Riboflavin biosynthesis p yes no 0.917 0.758 0.775 0.0
O66679406 Riboflavin biosynthesis p yes no 0.752 0.832 0.596 1e-113
Q0AXM5398 Riboflavin biosynthesis p yes no 0.750 0.846 0.597 1e-113
Q9Z734418 Riboflavin biosynthesis p yes no 0.763 0.820 0.573 1e-111
A4X639400 Riboflavin biosynthesis p yes no 0.752 0.845 0.561 1e-110
A0Q3H7414 Riboflavin biosynthesis p yes no 0.746 0.809 0.568 1e-110
Q0S0K2417 Riboflavin biosynthesis p yes no 0.757 0.815 0.583 1e-109
A8LY38420 Riboflavin biosynthesis p yes no 0.752 0.804 0.555 1e-109
Q5WH08397 Riboflavin biosynthesis p yes no 0.748 0.846 0.564 1e-108
C0ZZE5424 Riboflavin biosynthesis p yes no 0.757 0.801 0.580 1e-108
>sp|P47924|RIBBA_ARATH Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2 Back     alignment and function desciption
 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/424 (77%), Positives = 365/424 (86%), Gaps = 12/424 (2%)

Query: 35  CLSIK-NVGRIKTAALVSGEGDVISYPNNNKKY---------TAIETQSDTIGFGTLGAE 84
             SIK N G++K AA++S E D++S+ N N            T    ++D++  GTL A+
Sbjct: 45  TFSIKTNTGKVK-AAVISREDDLLSFTNGNTPLSNGSLIDDRTEEPLEADSVSLGTLAAD 103

Query: 85  ITPKTSD-FFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAAS 143
             P  ++ F   DD+F+LD PT GF+SI EAIEDIRQGKLV+VVDDEDRENEGDL+MAA 
Sbjct: 104 SAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQ 163

Query: 144 LVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTT 203
           L TPEAMAFIVRHGTGIVCVSMK +DLERL LPLMVN K+NEEKL TAFTV+VDAK+GTT
Sbjct: 164 LATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTT 223

Query: 204 TGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGL 263
           TGVSA DRA T+L+LA RDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL VLAGL
Sbjct: 224 TGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGL 283

Query: 264 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPT 323
           +PV VLCEIVDDDGSMARLPKLR+FA   NLK++SIADLIRYRRKRD+LVE A+AA IPT
Sbjct: 284 DPVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPT 343

Query: 324 MWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLAL 383
           MWGPF A+CYRS+LDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLAL
Sbjct: 344 MWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLAL 403

Query: 384 AMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGI 443
           +M+QIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD G DTVEANEELGLPVDSREYGI
Sbjct: 404 SMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGI 463

Query: 444 GAQL 447
           GAQ+
Sbjct: 464 GAQI 467
Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 2EC: 5
>sp|O66679|RIBBA_AQUAE Riboflavin biosynthesis protein RibBA OS=Aquifex aeolicus (strain VF5) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q0AXM5|RIBBA_SYNWW Riboflavin biosynthesis protein RibBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q9Z734|RIBBA_CHLPN Riboflavin biosynthesis protein RibBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A4X639|RIBBA_SALTO Riboflavin biosynthesis protein RibBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A0Q3H7|RIBBA_CLONN Riboflavin biosynthesis protein RibBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q0S0K2|RIBBA_RHOSR Riboflavin biosynthesis protein RibBA OS=Rhodococcus sp. (strain RHA1) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A8LY38|RIBBA_SALAI Riboflavin biosynthesis protein RibBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q5WH08|RIBBA_BACSK Riboflavin biosynthesis protein RibBA OS=Bacillus clausii (strain KSM-K16) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|C0ZZE5|RIBBA_RHOE4 Riboflavin biosynthesis protein RibBA OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ribBA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
255587021531 GTP cyclohydrolase II, putative [Ricinus 0.988 0.836 0.781 0.0
225465770 559 PREDICTED: riboflavin biosynthesis prote 0.959 0.771 0.766 0.0
224096145449 predicted protein [Populus trichocarpa] 0.846 0.846 0.897 0.0
296087438 845 unnamed protein product [Vitis vinifera] 0.959 0.510 0.766 0.0
359480493534 PREDICTED: riboflavin biosynthesis prote 0.982 0.825 0.752 0.0
33308405539 GTP cyclohydrolase II/3,4-dihydroxy-2-bu 0.979 0.816 0.764 0.0
298561264 557 GTP cyclohydrolase II/3,4-dihydroxy-2-bu 0.951 0.766 0.764 0.0
356525856544 PREDICTED: riboflavin biosynthesis prote 0.979 0.808 0.753 0.0
356554732544 PREDICTED: riboflavin biosynthesis prote 0.895 0.738 0.800 0.0
79547445543 GTP cyclohydrolase-2 [Arabidopsis thalia 0.917 0.758 0.775 0.0
>gi|255587021|ref|XP_002534102.1| GTP cyclohydrolase II, putative [Ricinus communis] gi|223525850|gb|EEF28284.1| GTP cyclohydrolase II, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/475 (78%), Positives = 399/475 (84%), Gaps = 31/475 (6%)

Query: 1   MSTSNLYCSSMALLVREPQGG-SCLHFVKPFSADG--------------CLSIKNVGRIK 45
           M++  LY SS        QGG   LH   PF+ +               C  +K V R++
Sbjct: 1   MASVYLYISSFN--PSPLQGGYKGLHCAYPFAPNDLTDLVVSSNPTRKLCFGLKGVSRVR 58

Query: 46  TAALVSGEGDVISYPNNN----------KKYT---AIETQSDTIGFGTLGAEITPKTSDF 92
            A+LVSGEGD++S  NNN           K+     +E Q D IGFGTL AEITP TS F
Sbjct: 59  -ASLVSGEGDLLSCHNNNGAPGQDTIVSNKFNPSPGLELQPDAIGFGTLSAEITPTTSAF 117

Query: 93  FPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAF 152
           FP+DDE+DLD PT GFASI EAIEDIRQGKLVIVVDDEDRENEGDLIMAAS  TPE MAF
Sbjct: 118 FPDDDEYDLDHPTDGFASIPEAIEDIRQGKLVIVVDDEDRENEGDLIMAASKATPEVMAF 177

Query: 153 IVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRA 212
           IV+HGTGIVCVSMKGEDLERLELPLMV HK+NEEKLCTAFTV+VDAK+GTTTGVSA+DRA
Sbjct: 178 IVKHGTGIVCVSMKGEDLERLELPLMVTHKENEEKLCTAFTVTVDAKHGTTTGVSAHDRA 237

Query: 213 KTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEI 272
            TVLALA RDSKP DFNRPGHIFPLKYREGGVLKRAGHTEASVDL++LAGLEPVAVLCEI
Sbjct: 238 ATVLALASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLSMLAGLEPVAVLCEI 297

Query: 273 VDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHC 332
           VDDDGSMARLP+LRQFAQTENLKIISIADLIRYRRKRDRLVELAA APIPTMWGPF+A+C
Sbjct: 298 VDDDGSMARLPRLRQFAQTENLKIISIADLIRYRRKRDRLVELAATAPIPTMWGPFEAYC 357

Query: 333 YRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 392
           YRSLLDGIEHIAMVKGEIGDG+DILVRVHSECLTGDIFGSARCDCGNQLALAM QIEAAG
Sbjct: 358 YRSLLDGIEHIAMVKGEIGDGKDILVRVHSECLTGDIFGSARCDCGNQLALAMTQIEAAG 417

Query: 393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQL 447
           RG+LVYLRGHEGRGIGLGHKLRA NLQDDG DTVEANEELGLPVDSREYG+GAQ+
Sbjct: 418 RGILVYLRGHEGRGIGLGHKLRACNLQDDGRDTVEANEELGLPVDSREYGLGAQI 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465770|ref|XP_002267374.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224096145|ref|XP_002310549.1| predicted protein [Populus trichocarpa] gi|222853452|gb|EEE90999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296087438|emb|CBI34027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480493|ref|XP_002266093.2| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] gi|297741836|emb|CBI33149.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|33308405|gb|AAQ03091.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|298561264|dbj|BAJ09646.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|356525856|ref|XP_003531537.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356554732|ref|XP_003545697.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|79547445|ref|NP_201235.4| GTP cyclohydrolase-2 [Arabidopsis thaliana] gi|27735197|sp|P47924.2|RIBBA_ARATH RecName: Full=Riboflavin biosynthesis protein ribBA, chloroplastic; Includes: RecName: Full=3,4-dihydroxy-2-butanone 4-phosphate synthase; Short=DHBP synthase; Includes: RecName: Full=GTP cyclohydrolase-2; AltName: Full=GTP cyclohydrolase II; Flags: Precursor gi|2462925|emb|CAA03884.1| GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phoshate synthase [Arabidopsis thaliana] gi|9759406|dbj|BAB09861.1| GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase [Arabidopsis thaliana] gi|332010484|gb|AED97867.1| GTP cyclohydrolase-2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2173373543 GCH "GTP cyclohydrolase II" [A 0.913 0.755 0.779 3e-172
TAIR|locus:2041253476 RIBA2 "homolog of ribA 2" [Ara 0.868 0.819 0.740 1.5e-152
TIGR_CMR|CHY_1473401 CHY_1473 "3,4-dihydroxy-2-buta 0.750 0.840 0.618 3.8e-110
TIGR_CMR|GSU_1690400 GSU_1690 "3,4-dihydroxy-2-buta 0.752 0.845 0.586 4.7e-103
TIGR_CMR|BA_4333397 BA_4333 "3,4-dihydroxy-2-butan 0.748 0.846 0.579 6.4e-99
UNIPROTKB|P0A5V0425 ribBA "Riboflavin biosynthesis 0.752 0.795 0.560 7.4e-98
TIGR_CMR|DET_1188403 DET_1188 "3,4-dihydroxy-2-buta 0.752 0.838 0.565 8.4e-97
TIGR_CMR|CBU_0647387 CBU_0647 "riboflavin biosynthe 0.714 0.829 0.518 1.9e-83
UNIPROTKB|Q9KPU3369 VC_2269 "3,4-dihydroxy-2-butan 0.726 0.883 0.476 8.9e-70
TIGR_CMR|VC_2269369 VC_2269 "3,4-dihydroxy-2-butan 0.726 0.883 0.476 8.9e-70
TAIR|locus:2173373 GCH "GTP cyclohydrolase II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
 Identities = 329/422 (77%), Positives = 365/422 (86%)

Query:    37 SIK-NVGRIKTAALVSGEGDVISYPNNNKKY---------TAIETQSDTIGFGTLGAEIT 86
             SIK N G++K AA++S E D++S+ N N            T    ++D++  GTL A+  
Sbjct:    47 SIKTNTGKVK-AAVISREDDLLSFTNGNTPLSNGSLIDDRTEEPLEADSVSLGTLAADSA 105

Query:    87 PKTSD-FFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLV 145
             P  ++ F   DD+F+LD PT GF+SI EAIEDIRQGKLV+VVDDEDRENEGDL+MAA L 
Sbjct:   106 PAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLA 165

Query:   146 TPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTG 205
             TPEAMAFIVRHGTGIVCVSMK +DLERL LPLMVN K+NEEKL TAFTV+VDAK+GTTTG
Sbjct:   166 TPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTG 225

Query:   206 VSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265
             VSA DRA T+L+LA RDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL VLAGL+P
Sbjct:   226 VSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDP 285

Query:   266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMW 325
             V VLCEIVDDDGSMARLPKLR+FA   NLK++SIADLIRYRRKRD+LVE A+AA IPTMW
Sbjct:   286 VGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPTMW 345

Query:   326 GPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAM 385
             GPF A+CYRS+LDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLAL+M
Sbjct:   346 GPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALSM 405

Query:   386 KQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGA 445
             +QIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD G DTVEANEELGLPVDSREYGIGA
Sbjct:   406 QQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGA 465

Query:   446 QL 447
             Q+
Sbjct:   466 QI 467
GO:0003935 "GTP cyclohydrolase II activity" evidence=IEA;IGI;ISS
GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase activity" evidence=IEA;IGI;ISS
GO:0009231 "riboflavin biosynthetic process" evidence=IEA;IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2041253 RIBA2 "homolog of ribA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1473 CHY_1473 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1690 GSU_1690 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4333 BA_4333 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5V0 ribBA "Riboflavin biosynthesis protein RibBA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1188 DET_1188 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0647 CBU_0647 "riboflavin biosynthesis protein RibA" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPU3 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2269 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9PLJ5RIBBA_CHLMU3, ., 5, ., 4, ., 2, 50.54250.75500.7995yesno
B0KAI2RIBBA_THEP33, ., 5, ., 4, ., 2, 50.58350.74160.8409yesno
C5D3N0RIBBA_GEOSW3, ., 5, ., 4, ., 2, 50.56170.74830.8463yesno
B0K0Y9RIBBA_THEPX3, ., 5, ., 4, ., 2, 50.58060.74160.8409yesno
C3LIX7RIBBA_BACAC3, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno
Q5WH08RIBBA_BACSK3, ., 5, ., 4, ., 2, 50.56470.74830.8463yesno
C3P7P7RIBBA_BACAA3, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno
A4TC13RIBBA_MYCGI3, ., 5, ., 4, ., 2, 50.55780.75270.7990yesno
Q635H0RIBBA_BACCZ3, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno
Q5YTP3RIBBA_NOCFA3, ., 5, ., 4, ., 2, 50.58130.75720.8212yesno
A0RIB3RIBBA_BACAH3, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno
P50855RIBBA_ACTPL3, ., 5, ., 4, ., 2, 50.53070.74610.8354yesno
B7IWM5RIBBA_BACC23, ., 5, ., 4, ., 2, 50.57640.74830.8463yesno
A4QEG9RIBBA_CORGB3, ., 5, ., 4, ., 2, 50.57010.74610.7938yesno
A5U2B7RIBBA_MYCTA3, ., 5, ., 4, ., 2, 50.56060.75270.7952yesno
C0ZKW2RIBBA_BREBN3, ., 5, ., 4, ., 2, 50.58820.74830.8421yesno
P0A5V0RIBBA_MYCTU3, ., 5, ., 4, ., 2, 50.56060.75270.7952yesno
P0A5V1RIBBA_MYCBO3, ., 5, ., 4, ., 2, 50.56060.75270.7952yesno
A4X639RIBBA_SALTO3, ., 5, ., 4, ., 2, 50.56170.75270.845yesno
Q818X6RIBBA_BACCR3, ., 5, ., 4, ., 2, 50.57640.74830.8463yesno
Q9Z734RIBBA_CHLPN3, ., 5, ., 4, ., 2, 50.57390.76390.8205yesno
B7JLW6RIBBA_BACC03, ., 5, ., 4, ., 2, 50.57640.74830.8463yesno
A1KIK4RIBBA_MYCBP3, ., 5, ., 4, ., 2, 50.56060.75270.7952yesno
C1AN60RIBBA_MYCBT3, ., 5, ., 4, ., 2, 50.56060.75270.7952yesno
O66679RIBBA_AQUAE3, ., 5, ., 4, ., 2, 50.59640.75270.8325yesno
B7HAY4RIBBA_BACC43, ., 5, ., 4, ., 2, 50.57350.74830.8463yesno
P47924RIBBA_ARATH3, ., 5, ., 4, ., 2, 50.77590.91750.7587yesno
C1EQY5RIBBA_BACC33, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno
B7HNM8RIBBA_BACC73, ., 5, ., 4, ., 2, 50.57640.74830.8463yesno
Q3B2I6RIBBA_PELLD3, ., 5, ., 4, ., 2, 50.56680.75720.8312yesno
O84736RIBBA_CHLTR3, ., 5, ., 4, ., 2, 50.53370.75500.7995yesno
Q0AXM5RIBBA_SYNWW3, ., 5, ., 4, ., 2, 50.59760.75050.8467yesno
A8LY38RIBBA_SALAI3, ., 5, ., 4, ., 2, 50.55580.75270.8047yesno
Q8NQ52RIBBA_CORGL3, ., 5, ., 4, ., 2, 50.57010.74610.7938yesno
B9IWX4RIBBA_BACCQ3, ., 5, ., 4, ., 2, 50.57640.74830.8463yesno
A9VG50RIBBA_BACWK3, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno
B1MCA4RIBBA_MYCA93, ., 5, ., 4, ., 2, 50.57800.75270.8105yesno
A1T8K1RIBBA_MYCVP3, ., 5, ., 4, ., 2, 50.55780.75270.7990yesno
Q0S0K2RIBBA_RHOSR3, ., 5, ., 4, ., 2, 50.58330.75720.8153yesno
C0ZZE5RIBBA_RHOE43, ., 5, ., 4, ., 2, 50.58040.75720.8018yesno
A0Q3H7RIBBA_CLONN3, ., 5, ., 4, ., 2, 50.56890.74610.8091yesno
B2HP67RIBBA_MYCMM3, ., 5, ., 4, ., 2, 50.56930.75270.7952yesno
Q81MB6RIBBA_BACAN3, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno
Q731I5RIBBA_BACC13, ., 5, ., 4, ., 2, 50.57640.74830.8463yesno
A7GSD5RIBBA_BACCN3, ., 5, ., 4, ., 2, 50.55880.74830.8463yesno
A0QI09RIBBA_MYCA13, ., 5, ., 4, ., 2, 50.56060.75270.7952yesno
A0PPL6RIBBA_MYCUA3, ., 5, ., 4, ., 2, 50.56640.75270.7952yesno
Q6HE54RIBBA_BACHK3, ., 5, ., 4, ., 2, 50.57940.74830.8463yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.99.120.991
3rd Layer3.5.40.976
3rd Layer4.1.990.976
3rd Layer3.5.4.250.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.1682.1
GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC-3.5.4.25) (449 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VII.325.1
6,7-dimethyl-8-ribityllumazine synthase (180 aa)
• •  •• 0.991
gw1.II.3064.1
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC-3.5.4.26) (316 aa)
• •  •• 0.986
eugene3.01700021
6,7-dimethyl-8-ribityllumazine synthase (221 aa)
• •  •• 0.984
estExt_fgenesh4_pg.C_LG_I0458
hypothetical protein (204 aa)
     •• 0.809
eugene3.00031452
hypothetical protein (211 aa)
     •• 0.802
gw1.XVIII.1081.1
annotation not avaliable (148 aa)
     •  0.800
gw1.XVI.2051.1
annotation not avaliable (265 aa)
     •  0.800
gw1.XV.93.1
hypothetical protein (1112 aa)
     •  0.800
gw1.XV.3381.1
hypothetical protein (519 aa)
     •  0.800
gw1.XII.1350.1
hypothetical protein (612 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
PLN02831450 PLN02831, PLN02831, Bifunctional GTP cyclohydrolas 0.0
PRK09311402 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-b 0.0
PRK09319 555 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-b 1e-172
PRK14019367 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-b 1e-124
pfam00926193 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 1e-108
COG0108203 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphat 1e-104
PRK09314339 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-b 3e-92
PRK12485369 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-b 8e-87
PRK09318387 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-b 5e-86
TIGR00506199 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosph 2e-84
PRK03353217 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phospha 3e-83
cd00641193 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (R 1e-76
PRK01792214 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phospha 8e-75
pfam00925169 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II 9e-71
PRK00393197 PRK00393, ribA, GTP cyclohydrolase II; Reviewed 2e-64
PRK00910218 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phospha 5e-64
COG0807193 COG0807, RibA, GTP cyclohydrolase II [Coenzyme met 8e-63
PRK00014230 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phospha 4e-62
TIGR00505191 TIGR00505, ribA, GTP cyclohydrolase II 3e-57
PRK08815375 PRK08815, PRK08815, GTP cyclohydrolase; Provisiona 5e-28
PRK05773219 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-pho 7e-22
PRK07198418 PRK07198, PRK07198, hypothetical protein; Validate 4e-05
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
 Score =  761 bits (1967), Expect = 0.0
 Identities = 308/375 (82%), Positives = 340/375 (90%), Gaps = 1/375 (0%)

Query: 74  DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRE 133
           D+  FGTL AEITP T DFF +D E D DRPT+GF+SI+EA+EDIRQGK V+VVDDEDRE
Sbjct: 1   DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRE 60

Query: 134 NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFT 193
           NEGDLIMAASLVTPEAMAF+V+HG+GIVCVSMKGEDL+RL LPLMV  K+NEEK+ TAFT
Sbjct: 61  NEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFT 120

Query: 194 VSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEA 253
           V+VDAK+GTTTGVSA+DRAKT+LALA  DSKPEDF RPGHIFPL+YREGGVLKRAGHTEA
Sbjct: 121 VTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEA 180

Query: 254 SVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312
           +VDLAVLAGL PV VLCEIV+D DGSMARLP+LR+FA+   LKIISIADLIRYRRKR++L
Sbjct: 181 AVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240

Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 372
           VE  A A +PT WG F A+CYRS LDGIEHIA VKG+IGDGQD+LVRVHSECLTGDIFGS
Sbjct: 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGS 300

Query: 373 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 432
           ARCDCGNQLALAM+ IE AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD+G DTVEANEEL
Sbjct: 301 ARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEEL 360

Query: 433 GLPVDSREYGIGAQL 447
           GLPVDSREYGIGAQ+
Sbjct: 361 GLPVDSREYGIGAQI 375

Length = 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA) Back     alignment and domain information
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
PLN02831450 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy- 100.0
PRK09319 555 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09311402 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09318387 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK12485369 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK14019367 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09314339 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK08815375 GTP cyclohydrolase; Provisional 100.0
COG0108203 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK00910218 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK01792214 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK00014230 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
TIGR00506199 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PF00926194 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphat 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 100.0
PRK03353217 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK05773219 3,4-dihydroxy-2-butanone 4-phosphate synthase; Val 100.0
COG0807193 RibA GTP cyclohydrolase II [Coenzyme metabolism] 100.0
PF00925169 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: 100.0
PRK00393197 ribA GTP cyclohydrolase II; Reviewed 100.0
TIGR00505191 ribA GTP cyclohydrolase II. Several members of the 100.0
cd00641193 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP 100.0
PRK07198418 hypothetical protein; Validated 99.95
KOG1284 357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 99.18
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
Probab=100.00  E-value=4.4e-119  Score=936.12  Aligned_cols=376  Identities=82%  Similarity=1.266  Sum_probs=366.8

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHH
Q 013104           74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFI  153 (449)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm  153 (449)
                      |+.+|||+++|++|++++||.++.+.+++.+.+.|++|++||++||+|+||||+||++||||||||+|||++||+.||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm   80 (450)
T PLN02831          1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL   80 (450)
T ss_pred             CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence            47899999999999999999999999999997789999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcEEeecChhhHhhcCCCcccccCCCCccccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCC
Q 013104          154 VRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH  233 (449)
Q Consensus       154 ~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGH  233 (449)
                      ++|++|+||++|++++|++|+||+|+....|.+.++++||||||+++|++|||||.|||+|||+||+|.++|+||++|||
T Consensus        81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH  160 (450)
T PLN02831         81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH  160 (450)
T ss_pred             HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence            99999999999999999999999999865577777899999999999999999999999999999999999999999999


Q ss_pred             ccccccccCccccccChhHHHHHHHHHcCCCccEEEEEEeCC-CCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhh
Q 013104          234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL  312 (449)
Q Consensus       234 VfPL~a~~gGvl~R~GhtEAAvdLarlAGl~PaaVi~eiv~~-dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~l  312 (449)
                      ||||++++|||++|+|||||||||||||||.|++|||||+++ ||+||+.+++.+||++|+||+|+|+|||+||++++++
T Consensus       161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l  240 (450)
T PLN02831        161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL  240 (450)
T ss_pred             ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999995 8999999999999999999999999999999999999


Q ss_pred             hhhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 013104          313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG  392 (449)
Q Consensus       313 V~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G  392 (449)
                      |+++++.++||.||.|++++|++..++.||+||++|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|
T Consensus       241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G  320 (450)
T PLN02831        241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAG  320 (450)
T ss_pred             ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhhhcCCCCCccchhhhhhccC
Q 013104          393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV  449 (449)
Q Consensus       393 ~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~~lg~~~D~RdYgigAQIL~  449 (449)
                      +|||||||+||||||||.+|+++|.+|++|+||++||.++|++.|.|+||+|||||+
T Consensus       321 ~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~  377 (450)
T PLN02831        321 RGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILR  377 (450)
T ss_pred             CEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999995

>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK08815 GTP cyclohydrolase; Provisional Back     alignment and domain information
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4 Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin Back     alignment and domain information
>PRK00393 ribA GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>TIGR00505 ribA GTP cyclohydrolase II Back     alignment and domain information
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA) Back     alignment and domain information
>PRK07198 hypothetical protein; Validated Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
1iez_A217 Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Ph 3e-55
1g57_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 3e-55
3h07_A220 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 1e-54
3lqu_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-54
3mk5_A212 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 4e-53
3mgz_A206 Crystal Structure Of Dhbps Domain Of Bi-Functional 4e-53
1tks_A204 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-51
1k49_A233 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-44
2bz0_A196 Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii 2e-31
2bz1_A196 Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase 3e-31
1pvw_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 6e-26
1pvy_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 7e-25
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Riboflavin Biosynthesis Length = 217 Back     alignment and structure 
Iteration: 1

 Score =  212 bits (540), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 2/204 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
           F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RHG+GIVC+ +  
Sbjct: 13  FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
           +  ++L+LP+MV  ++N     T FTV+++A  G TTGVSA DR  TV A     +KP D
Sbjct: 73  DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
            NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DDG+MAR P+  +
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 190
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
           FA   N+ +++I DL+ YR+  +R
Sbjct: 191 FANKHNMALVTIEDLVAYRQAHER 214
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Length = 217 Back     alignment and structure
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From Yersinia Pestis Co92 Length = 220 Back     alignment and structure
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Complexed With Ribulose-5 Phosphate Length = 217 Back     alignment and structure
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Domain From Mycobacterium Tuberculosis With Sulfate And Zinc At Ph 4.00 Length = 212 Back     alignment and structure
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional DhbpsGTP Cyclohydrolase Ii From Mycobacterium Tuberculosis At Ph 4.0 Length = 206 Back     alignment and structure
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Candida Albicans Length = 204 Back     alignment and structure
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (Cation Free Form) Length = 233 Back     alignment and structure
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In Complex With Gtp Analogue, Gmpcpp, And Zinc Length = 196 Back     alignment and structure
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii Length = 196 Back     alignment and structure
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii Length = 227 Back     alignment and structure
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii In Complex With Ribulose 5-Phosphate Length = 227 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-132
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-130
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-130
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-129
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-118
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 4e-87
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Length = 217 Back     alignment and structure
 Score =  378 bits (974), Expect = e-132
 Identities = 100/217 (46%), Positives = 142/217 (65%), Gaps = 2/217 (0%)

Query: 97  DEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRH 156
            +  L      F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RH
Sbjct: 2   AQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRH 61

Query: 157 GTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVL 216
           G+GIVC+ +  +  ++L+LP+MV +  N     T FTV+++A  G TTGVSA DR  TV 
Sbjct: 62  GSGIVCLCITEDRRKQLDLPMMVEN--NTSAYGTGFTVTIEAAEGVTTGVSAADRITTVR 119

Query: 217 ALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDD 276
           A     +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DD
Sbjct: 120 AAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDD 179

Query: 277 GSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLV 313
           G+MAR P+  +FA   N+ +++I DL+ YR+  +R  
Sbjct: 180 GTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKA 216
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Length = 204 Back     alignment and structure
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A Length = 206 Back     alignment and structure
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Length = 233 Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Length = 227 Back     alignment and structure
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 100.0
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Back     alignment and structure
Probab=100.00  E-value=3.4e-77  Score=571.80  Aligned_cols=208  Identities=48%  Similarity=0.736  Sum_probs=200.8

Q ss_pred             CCCcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCC
Q 013104          105 TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDN  184 (449)
Q Consensus       105 ~~~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~  184 (449)
                      .+.|++|++||++||+|+||||+||++||||||||+|||++||+.||||+||++|+||+||++++|++|+||+|+..  |
T Consensus         9 ~~~~~~ie~Ai~alr~G~~Viv~DdedREnEgDLi~aAe~~T~e~i~fm~r~~~GliC~~lt~e~~~~L~Lp~Mv~~--n   86 (233)
T 1k4i_A            9 KSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTH--N   86 (233)
T ss_dssp             ---CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--C
T ss_pred             CCchhHHHHHHHHHHCCCeEEEEeCCCCCcceeEEEEhhhCCHHHHHHHHHcCCCCEEEEcCHHHHhhCCCcccccc--c
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999987  8


Q ss_pred             CccccCceEEEeecCC-CCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCC
Q 013104          185 EEKLCTAFTVSVDAKY-GTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGL  263 (449)
Q Consensus       185 ~~~~~taftvsVDa~~-g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl  263 (449)
                      ++.++|+|||||||++ |++|||||+||++||++|++++++|+||+||||||||++++||||+|+|||||||||||||||
T Consensus        87 ~~~~~TaFTVsVda~~~g~tTGISA~DRa~Tir~la~~~~~p~df~rPGHvfPL~A~~GGVl~R~GHTEAaVDLarLAGl  166 (233)
T 1k4i_A           87 ADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGK  166 (233)
T ss_dssp             CCSSCCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTC
T ss_pred             CCCCCCCeEEEEEcccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceeeecCCCeeccCChHHHHHHHHHHcCC
Confidence            8889999999999998 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEeCC-----------CCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhh
Q 013104          264 EPVAVLCEIVDD-----------DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE  314 (449)
Q Consensus       264 ~PaaVi~eiv~~-----------dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~  314 (449)
                      .|++|||||+++           ||+|||++++.+||++||||+|||+|||+||+++|++|+
T Consensus       167 ~PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iitI~dLi~yr~~~e~~v~  228 (233)
T 1k4i_A          167 RPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE  228 (233)
T ss_dssp             CSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHCCC-
T ss_pred             CceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcCCeec
Confidence            999999999999           999999999999999999999999999999999998874
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A Back     alignment and structure
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Back     alignment and structure
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Back     alignment and structure
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1g57a_209 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-78
d1snna_219 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-78
d1k4ia_216 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-75
d1tksa_202 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 6e-75
d2bz1a1174 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {E 3e-37
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

 Score =  240 bits (614), Expect = 2e-78
 Identities = 97/203 (47%), Positives = 139/203 (68%), Gaps = 2/203 (0%)

Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
           F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RHG+GIVC+ +  
Sbjct: 9   FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68

Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
           +  ++L+LP+MV +  +     T FTV+++A  G TTGVSA DR  TV A     +KP D
Sbjct: 69  DRRKQLDLPMMVENNTS--AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 126

Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
            NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DDG+MAR P+  +
Sbjct: 127 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 186

Query: 288 FAQTENLKIISIADLIRYRRKRD 310
           FA   N+ +++I DL+ YR+  +
Sbjct: 187 FANKHNMALVTIEDLVAYRQAHE 209
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 219 Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Length = 216 Back     information, alignment and structure
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Length = 202 Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1g57a_209 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1tksa_202 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1k4ia_216 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1snna_219 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d2bz1a1174 GTP cyclohydrolase II, RibA {Escherichia coli [Tax 100.0
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-72  Score=532.81  Aligned_cols=202  Identities=49%  Similarity=0.873  Sum_probs=193.5

Q ss_pred             CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104          107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE  186 (449)
Q Consensus       107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~  186 (449)
                      .|++|++||++||+|+||||+||++||||||||++||.+||+.|+||+||++|+||+||++++|++|+||+|+..  |.+
T Consensus         8 ~~~~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--~~~   85 (209)
T d1g57a_           8 PFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN--NTS   85 (209)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--CCC
T ss_pred             chhhHHHHHHHHHCCCEEEEEECCCCCCcccEEEEHHHCCHHHHHHHHHhCCCCEEEcccHHHHhcCCCCCcccc--ccc
Confidence            478899999999999999999999999999999999999999999999999999999999999999999999976  777


Q ss_pred             cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104          187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV  266 (449)
Q Consensus       187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa  266 (449)
                      .++++|+||||+++|++|||||.|||+||+.|++++++|+||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus        86 ~~~~~ftvsvd~~~g~tTGISa~dRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~gGv~~R~GHTEaavdL~~lAGl~P~  165 (209)
T d1g57a_          86 AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPA  165 (209)
T ss_dssp             TTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCSC
T ss_pred             ccCCcceEEEEecCCccccccHHHHHHHHHHhhccCCCHHHhcCCceeceeeeccCCccccchHHHHHHHHHHhcCCCCe
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhh
Q 013104          267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD  310 (449)
Q Consensus       267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e  310 (449)
                      +||||||+++|+|++.+++++||++|+||+|+|+|||+||+++|
T Consensus       166 avi~Eil~~dG~~~~~~~~~~fA~~~~l~~isi~dli~yr~~~e  209 (209)
T d1g57a_         166 GVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE  209 (209)
T ss_dssp             EEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred             EEEEEEecCCCcccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999875
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Back     information, alignment and structure
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure