Citrus Sinensis ID: 013117

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MKAAQTPHKKEVPCVFGRPPQLPITKIIRLSAALLARHRRCSTPTAALSLPPRVCSLRPESLSCRLSTIYSWHFTGKTKLCSVDAAMATTKPRLSSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGTSGSCSGSSKAGTLDF
cccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHccEEEEEEcccccHHHHHHHHcccccccEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccc
ccccccccccccccEcccccEEEEEHHHHHHHHHHHHHHccccHHHHHEccccccEEEEEEcccccccEEccccccccccccccHHHccccccccccccccccccccccccccccccccEEEccccHcHHHHHcccccccEEEEEEccccccHHHHHHHHHHHcccEcccEEEEEcccccHHHHHHHcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccEcccccccHHHccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcHEEEEccccccHHHcccHHHHccccccEEEEEEcccHccccccccccccEEEEEcccEEEEEEEccccccccccccccccccccccccccccccc
mkaaqtphkkevpcvfgrppqlpiTKIIRLSAALLARHRrcstptaalslpprvcslrpeslscrlstiyswhftgktkLCSVdaamattkprlssfsrnlsavsssqtpgvkcgpngtmfvssgiadldkilgggfplgsLVMVMEDAEAPHHMLLLRNFMsqglvhgqpllyaspskdprgflgtlpspaslkhdksrdresEQEKGLRIAWQYKKymgenqpnfdshrdnkqdycnefdfrkplerhyftrqrvncvgiqhSKNLAALQEHCASFLAQhqrndgssaLAGRIAIQslcapqcehsnmdWEMLSFIKSLKgmvrssnavvvitfppsllslssTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLEClnqapvdgssgssygtsgscsgsskagtldf
mkaaqtphkkevpcvfgrppqlpITKIIRLSAALLARHRRCStptaalslpprvcSLRPESLSCRLSTIYSWHFTGKTKLCSVDAAMATTKPRLSSFSRNLSAVSssqtpgvkcgpnGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTlpspaslkhdksrdreseqekGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQApvdgssgssygtsgscsgsskagtldf
MKAAQTPHKKEVPCVFGRPPQLPITKIIrlsaallarhrrCSTPTAALSLPPRVCSLRPESLSCRLSTIYSWHFTGKTKLCSVDAAMATTKPRLSSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPsllslssTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDgssgssygtsgscsgssKAGTLDF
************PCVFGRPPQLPITKIIRLSAALLARHRRCSTPTAALSLPPRVCSLRPESLSCRLSTIYSWHFTGKTKLCSVDAAM**************************CGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLY***********************************LRIAWQYKKYM***************DYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRN*GSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQ****************************
************PCVFGRPPQLPITKIIRLSAALLARHRRCSTPTAALSLPPRVCSLRPESLSCRLSTIYSWH*********************************************TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFL****************************WQ*********************YCNEFDFRKPLE*****RQRVNCVGIQHSKNLAALQEH********************IAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAI****************MVGLLNVHKVARLNTQ*PLILEATTFSIKLQKRRFLVLECLN*****************************
***********VPCVFGRPPQLPITKIIRLSAALLARHRRCSTPTAALSLPPRVCSLRPESLSCRLSTIYSWHFTGKTKLCSVDAAMATTKPR******************VKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPA****************GLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVD************************
*********KEVPCVFGRPPQLPITKIIRLSAALLARHRRCSTPTAALSLPPRVCSLRPESLSCRLSTIYSWHFTGKT*********************************VKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPS*****************KGLRIAWQYKKYM****************YCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPV*************************
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MKAAQTPHKKEVPCVFGRPPQLPITKIIRLSAALLARHRRCSTPTAALSLPPRVCSLRPESLSCRLSTIYSWHFTGKTKLCSVDAAMATTKPRLSSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGTSGSCSGSSKAGTLDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
Q9C778355 Elongator complex protein yes no 0.761 0.963 0.658 1e-127
Q5XG58408 Elongator complex protein N/A no 0.690 0.759 0.270 4e-26
Q566Y1397 Elongator complex protein yes no 0.648 0.732 0.264 2e-22
Q2TBH6423 Elongator complex protein yes no 0.648 0.687 0.254 3e-22
Q9ER73422 Elongator complex protein yes no 0.654 0.696 0.257 2e-21
Q54XS0439 Probable elongator comple yes no 0.683 0.699 0.264 2e-20
Q96EB1424 Elongator complex protein yes no 0.650 0.688 0.231 2e-19
Q18195334 Putative elongator comple yes no 0.576 0.775 0.218 1e-09
Q60ZM2333 Putative elongator comple N/A no 0.612 0.825 0.220 3e-09
Q9VMQ7437 Putative elongator comple yes no 0.229 0.235 0.321 4e-09
>sp|Q9C778|ELP4_ARATH Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1 Back     alignment and function desciption
 Score =  456 bits (1173), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/351 (65%), Positives = 278/351 (79%), Gaps = 9/351 (2%)

Query: 99  RNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLL 158
           RN+S VSS Q PG+K GPNGT F+SSGI DLD+ILGGG+PLGSLVMVMED EAPHHM LL
Sbjct: 14  RNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLL 73

Query: 159 RNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKK 218
           R +MSQGLV+ QPLLYASPSKDP+GFLGTLP PAS K DK    + +Q + LRIAWQY+K
Sbjct: 74  RTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYRK 133

Query: 219 YMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF 278
           Y+ ENQ N         DY N+FD RKPLER + + + ++CV +  S +L+  Q+HCA+F
Sbjct: 134 YL-ENQKN------AIDDYSNDFDMRKPLERQFLSGRPIDCVSLLDSSDLSIAQDHCATF 186

Query: 279 LAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPP 338
           L++  RN  + A  GRIAIQS C+P CE+S  + +MLSFI+ LK M+  SNAV ++TFPP
Sbjct: 187 LSKFPRNSSNIASIGRIAIQSFCSPLCEYSEKESDMLSFIRLLKSMLMVSNAVAIVTFPP 246

Query: 339 SLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLI 398
           SLLS SS+KR QHMADTLLS+ AIPD DKEL KLL+GY+D+ G LN+HKVAR+NTQVP+I
Sbjct: 247 SLLSPSSSKRLQHMADTLLSIKAIPDGDKELEKLLTGYKDINGFLNIHKVARINTQVPVI 306

Query: 399 LEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGTSGSCSGSSKAGTLDF 449
           LEA TFS+ L+KRRFL LECLNQAPVDGSSG+SYGTSGSC  SSK+G LDF
Sbjct: 307 LEAKTFSMSLKKRRFLALECLNQAPVDGSSGTSYGTSGSC--SSKSGALDF 355
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Promotes organs development by modulating cell division rate. May regulate mechanisms producing carbon assimilates or importing sucrose. Involved in the repression of the abscisic acid (ABA) signaling pathway during seed germination and seedling growth. Required for auxin distribution or signaling. Involved in oxidative stress signaling. Prevents anthocyanins accumulation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5XG58|ELP4_XENLA Elongator complex protein 4 OS=Xenopus laevis GN=elp4 PE=2 SV=1 Back     alignment and function description
>sp|Q566Y1|ELP4_DANRE Elongator complex protein 4 OS=Danio rerio GN=elp4 PE=2 SV=2 Back     alignment and function description
>sp|Q2TBH6|ELP4_BOVIN Elongator complex protein 4 OS=Bos taurus GN=ELP4 PE=2 SV=1 Back     alignment and function description
>sp|Q9ER73|ELP4_MOUSE Elongator complex protein 4 OS=Mus musculus GN=Elp4 PE=2 SV=2 Back     alignment and function description
>sp|Q54XS0|ELP4_DICDI Probable elongator complex protein 4 OS=Dictyostelium discoideum GN=elp4 PE=3 SV=1 Back     alignment and function description
>sp|Q96EB1|ELP4_HUMAN Elongator complex protein 4 OS=Homo sapiens GN=ELP4 PE=1 SV=2 Back     alignment and function description
>sp|Q18195|ELP4_CAEEL Putative elongator complex protein 4 OS=Caenorhabditis elegans GN=elpc-4 PE=3 SV=1 Back     alignment and function description
>sp|Q60ZM2|ELP4_CAEBR Putative elongator complex protein 4 OS=Caenorhabditis briggsae GN=elpc-4 PE=3 SV=1 Back     alignment and function description
>sp|Q9VMQ7|ELP4_DROME Putative elongator complex protein 4 OS=Drosophila melanogaster GN=CG6907 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
147821448363 hypothetical protein VITISV_011445 [Viti 0.808 1.0 0.768 1e-161
224112513363 predicted protein [Populus trichocarpa] 0.808 1.0 0.771 1e-159
296090512362 unnamed protein product [Vitis vinifera] 0.799 0.991 0.767 1e-159
359495846361 PREDICTED: elongator complex protein 4-l 0.804 1.0 0.763 1e-159
255585946363 conserved hypothetical protein [Ricinus 0.808 1.0 0.768 1e-156
358344187349 Elongator complex protein [Medicago trun 0.777 1.0 0.730 1e-152
449451375362 PREDICTED: elongator complex protein 4-l 0.806 1.0 0.752 1e-150
66841022355 elongator component [Arabidopsis thalian 0.772 0.977 0.660 1e-127
42564060355 elongator complex protein 4 [Arabidopsis 0.761 0.963 0.658 1e-125
115469124377 Os06g0639600 [Oryza sativa Japonica Grou 0.788 0.938 0.628 1e-123
>gi|147821448|emb|CAN76747.1| hypothetical protein VITISV_011445 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/363 (76%), Positives = 312/363 (85%)

Query: 87  MATTKPRLSSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVM 146
           MA  K R+SSFSRN S   + Q PG+K GPNGT+F+SSGI DLDKILGGGFPLGSLVMVM
Sbjct: 1   MAAMKTRMSSFSRNTSVAPAPQAPGLKSGPNGTIFLSSGIPDLDKILGGGFPLGSLVMVM 60

Query: 147 EDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQ 206
           ED EAPHHMLLLRNFMSQGLVH QPLLYASPSKDPR FLGTLPSP   K D+S +R+ EQ
Sbjct: 61  EDTEAPHHMLLLRNFMSQGLVHNQPLLYASPSKDPRAFLGTLPSPVLSKDDRSHNRDPEQ 120

Query: 207 EKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSK 266
           EKGLRIAWQYKKY GE+QPNFDSHRD K +YCN+FD RKPLER + T Q + C+ IQ   
Sbjct: 121 EKGLRIAWQYKKYFGEHQPNFDSHRDTKHEYCNDFDLRKPLERXFLTAQNICCLSIQDPP 180

Query: 267 NLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVR 326
           NLAA ++ CA FLAQ  RN+ S + AGR+AIQS CAPQCE+SNM+W+MLSFI+SLKGM+R
Sbjct: 181 NLAAXRDCCAKFLAQFSRNNSSISCAGRVAIQSFCAPQCEYSNMEWDMLSFIRSLKGMIR 240

Query: 327 SSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVH 386
             NAV VITFPPSLLS SS+KRWQH+ADTLLSV AIPDEDKELA LL+GYQDMVGLLNVH
Sbjct: 241 DLNAVAVITFPPSLLSPSSSKRWQHIADTLLSVKAIPDEDKELANLLTGYQDMVGLLNVH 300

Query: 387 KVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGTSGSCSGSSKAGT 446
           KVA +NTQVP+ILEATTFSIKLQKRR+LVLECLNQAPVDGSSGSSY ++GSCSGS+K GT
Sbjct: 301 KVANVNTQVPVILEATTFSIKLQKRRYLVLECLNQAPVDGSSGSSYASTGSCSGSTKTGT 360

Query: 447 LDF 449
           LDF
Sbjct: 361 LDF 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112513|ref|XP_002316217.1| predicted protein [Populus trichocarpa] gi|222865257|gb|EEF02388.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296090512|emb|CBI40843.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495846|ref|XP_002267851.2| PREDICTED: elongator complex protein 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255585946|ref|XP_002533644.1| conserved hypothetical protein [Ricinus communis] gi|223526457|gb|EEF28732.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|358344187|ref|XP_003636173.1| Elongator complex protein [Medicago truncatula] gi|355502108|gb|AES83311.1| Elongator complex protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449451375|ref|XP_004143437.1| PREDICTED: elongator complex protein 4-like [Cucumis sativus] gi|449496395|ref|XP_004160123.1| PREDICTED: elongator complex protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|66841022|emb|CAI79646.1| elongator component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42564060|ref|NP_566388.2| elongator complex protein 4 [Arabidopsis thaliana] gi|75169267|sp|Q9C778.1|ELP4_ARATH RecName: Full=Elongator complex protein 4; Short=AtELP4; AltName: Full=Elongator component 4; AltName: Full=Protein ELONGATA 1 gi|12321866|gb|AAG50962.1|AC073395_4 hypothetical protein; 53156-50996 [Arabidopsis thaliana] gi|332641494|gb|AEE75015.1| elongator complex protein 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115469124|ref|NP_001058161.1| Os06g0639600 [Oryza sativa Japonica Group] gi|51535593|dbj|BAD37537.1| Paxneb protein-like [Oryza sativa Japonica Group] gi|51536358|dbj|BAD37489.1| Paxneb protein-like [Oryza sativa Japonica Group] gi|113596201|dbj|BAF20075.1| Os06g0639600 [Oryza sativa Japonica Group] gi|222635954|gb|EEE66086.1| hypothetical protein OsJ_22107 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
DICTYBASE|DDB_G0278783439 elp4 "RNA polymerase II elonga 0.461 0.471 0.253 2.5e-24
UNIPROTKB|G5E569423 ELP4 "Elongator complex protei 0.273 0.290 0.350 2.8e-19
UNIPROTKB|Q2TBH6423 ELP4 "Elongator complex protei 0.273 0.290 0.350 2.8e-19
RGD|1566052422 Elp4 "elongator acetyltransfer 0.224 0.239 0.355 9.3e-19
MGI|MGI:1925016422 Elp4 "elongation protein 4 hom 0.224 0.239 0.355 2e-18
UNIPROTKB|F1SGP7424 ELP4 "Uncharacterized protein" 0.262 0.278 0.330 4.4e-18
UNIPROTKB|F1PZ43479 ELP4 "Uncharacterized protein" 0.278 0.260 0.338 5.7e-18
UNIPROTKB|I3LQ04403 ELP4 "Uncharacterized protein" 0.262 0.292 0.330 1.1e-17
RGD|1592018408 LOC365839 "similar to elongati 0.220 0.242 0.357 1.9e-17
UNIPROTKB|F1NF63394 ELP4 "Uncharacterized protein" 0.340 0.388 0.284 9.9e-17
DICTYBASE|DDB_G0278783 elp4 "RNA polymerase II elongator complex subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 182 (69.1 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
 Identities = 58/229 (25%), Positives = 108/229 (47%)

Query:   210 LRIAWQYKKY----MGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCV----- 260
             L+IAW+Y++Y    + + Q    +     Q +C+ +DF + +       + ++ +     
Sbjct:   166 LKIAWRYQQYVSNELSKQQQQQSASTIMNQTFCHSYDFTRKMNVQSMNPELIHTLSHDAQ 225

Query:   261 ----GIQHSKNL-AALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEML 315
                 G    +NL   +Q     +  +   N   + +  R+ IQS  +P    SN +  ++
Sbjct:   226 SQAEGTSPYRNLFLEIQNLVYKYNKEAAMNPDQTRVL-RLCIQSFSSPLW--SNDEEGVI 282

Query:   316 SFIKSLKGMVRSSNAVVVITFPPXXXXXXXTKRWQHMADTLLSVAAIPDEDKELAKLLSG 375
              F+ +LKG++RSS A  VI+ P         K+  H+ DT++S+ +      E  +  + 
Sbjct:   283 EFLHALKGLLRSSVATCVISVPTYIYSGAFVKKIAHLCDTVVSINSFSGLGGETPEQFAE 342

Query:   376 YQDMVGLLNVHKVARLNT-QVPLILEATTFSIKLQKRRFLVLECLNQAP 423
             Y   +GL N+ K+ARLNT  +    +  TF  K+ KRR + +E ++  P
Sbjct:   343 Y---LGLFNIRKIARLNTLSLSFHPDMLTFVFKM-KRRKMCIETIHLPP 387
GO:0033588 "Elongator holoenzyme complex" evidence=IEA
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISS
GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS
GO:0008023 "transcription elongation factor complex" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
UNIPROTKB|G5E569 ELP4 "Elongator complex protein 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBH6 ELP4 "Elongator complex protein 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1566052 Elp4 "elongator acetyltransferase complex subunit 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1925016 Elp4 "elongation protein 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGP7 ELP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZ43 ELP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQ04 ELP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1592018 LOC365839 "similar to elongation protein 4 homolog" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NF63 ELP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C778ELP4_ARATHNo assigned EC number0.65810.76160.9633yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011637001
SubName- Full=Chromosome undetermined scaffold_324, whole genome shotgun sequence; (363 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00010464001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (563 aa)
      • 0.410
GSVIVG00018528001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (1316 aa)
      • 0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
pfam05625357 pfam05625, PAXNEB, PAXNEB protein 6e-76
COG0467260 COG0467, RAD55, RecA-superfamily ATPases implicate 3e-08
PRK06067234 PRK06067, PRK06067, flagellar accessory protein Fl 3e-04
COG2874235 COG2874, FlaH, Predicted ATPases involved in bioge 7e-04
TIGR03880224 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_03 0.001
>gnl|CDD|218663 pfam05625, PAXNEB, PAXNEB protein Back     alignment and domain information 
 Score =  241 bits (616), Expect = 6e-76
 Identities = 105/378 (27%), Positives = 170/378 (44%), Gaps = 44/378 (11%)

Query: 95  SSFSRNLSAVSSSQTPGVKCGP-NGTMFVSSGIADLDKILGG--GFPLGSLVMVMEDAEA 151
           +SF +    +S  Q PG +  P NG    S+G   LDK+LGG  G PLGS +++ ED   
Sbjct: 1   TSFRK---RISPPQIPGTRPSPHNGQPTTSTGTPSLDKLLGGHGGLPLGSSLLIEEDGTT 57

Query: 152 PHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLK---HDKSRDRES--EQ 206
               +LL+ F ++G+V    +  AS    P  +L  LP P         K++        
Sbjct: 58  DFASVLLKYFAAEGVVQDHHVFVASL---PEQWLRELPGPYKGSEKSEKKAKIANESKRA 114

Query: 207 EKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLER--------HYFTRQRVN 258
            + ++IAW+Y+   GE +    S R+    + ++FD  K L+         +  +   ++
Sbjct: 115 GEKMKIAWRYELL-GEVESGAASSRNP--AFGHQFDLTKRLDPGPLISEITYIPSLLSLS 171

Query: 259 CVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNM--DWEMLS 316
                ++  L  +Q   A  L        +     RI I SL +P           E+L 
Sbjct: 172 TTASPYASLLKQIQSLIAKSL-------FNPNNVLRIVIPSLLSPLWYPPECSQPTELLP 224

Query: 317 FIKSLKGMVR--SSNAVVVITFPPSLLSLSS--TKRWQHMADTLLSVAAIPDE-DKELAK 371
           F+ SL+ ++R  SSN V +IT P SL    S   +  + +AD ++ +   P   +KE   
Sbjct: 225 FLHSLRALLRKYSSNLVAIITLPLSLYPRDSGLVRWIELLADGVIELEPFPGSMEKETNP 284

Query: 372 LLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSS 431
           L   YQ   GLLN+HK+  LN +  ++ +    + KL++++F  +E  +  P D    + 
Sbjct: 285 LYKEYQ---GLLNIHKLPVLNERGGMMPDTKDLAFKLKRKKF-EIEPWHLPPEDDDKEAQ 340

Query: 432 YGTSGSCSGSSKAGTLDF 449
            G S   SG S    LDF
Sbjct: 341 KG-SQDGSGGSTKKDLDF 357

PAXNEB or PAX6 neighbor is found in several eukaryotic organisms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop motif. However its sequence has degraded in many members of the family. Length = 357
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|180381 PRK06067, PRK06067, flagellar accessory protein FlaH; Validated Back     alignment and domain information
>gnl|CDD|225429 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
PF05625363 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RN 100.0
KOG3949360 consensus RNA polymerase II elongator complex, sub 100.0
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 99.9
PRK04328249 hypothetical protein; Provisional 99.89
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 99.88
PRK06067234 flagellar accessory protein FlaH; Validated 99.85
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 99.84
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 99.8
TIGR02655 484 circ_KaiC circadian clock protein KaiC. Members of 99.8
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 99.8
PRK09302509 circadian clock protein KaiC; Reviewed 99.79
PRK09302 509 circadian clock protein KaiC; Reviewed 99.79
COG2874235 FlaH Predicted ATPases involved in biogenesis of a 99.78
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 99.78
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 99.72
PRK08533230 flagellar accessory protein FlaH; Reviewed 99.68
PRK09361225 radB DNA repair and recombination protein RadB; Pr 99.63
cd01394218 radB RadB. The archaeal protein radB shares simila 99.63
TIGR00416 454 sms DNA repair protein RadA. The gene protuct code 99.61
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 99.58
PRK11823 446 DNA repair protein RadA; Provisional 99.58
cd01393226 recA_like RecA is a bacterial enzyme which has rol 99.5
TIGR02237209 recomb_radB DNA repair and recombination protein R 99.48
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 99.47
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 99.44
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 99.43
PRK04301317 radA DNA repair and recombination protein RadA; Va 99.43
PRK09354349 recA recombinase A; Provisional 99.42
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 99.41
TIGR02012321 tigrfam_recA protein RecA. This model describes or 99.39
cd00983325 recA RecA is a bacterial enzyme which has roles in 99.39
TIGR02236310 recomb_radA DNA repair and recombination protein R 99.32
PTZ00035337 Rad51 protein; Provisional 99.31
PLN03186342 DNA repair protein RAD51 homolog; Provisional 99.27
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 99.25
PRK09519 790 recA DNA recombination protein RecA; Reviewed 99.17
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 99.17
COG1066 456 Sms Predicted ATP-dependent serine protease [Postt 99.11
PRK05973237 replicative DNA helicase; Provisional 99.09
cd01124187 KaiC KaiC is a circadian clock protein primarily f 98.92
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 98.9
TIGR00665434 DnaB replicative DNA helicase. This model describe 98.89
PF09807249 DUF2348: Uncharacterized conserved protein (DUF234 98.81
PRK05748448 replicative DNA helicase; Provisional 98.76
PF00154322 RecA: recA bacterial DNA recombination protein; In 98.64
PRK09165497 replicative DNA helicase; Provisional 98.47
PHA02542473 41 41 helicase; Provisional 98.42
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 98.42
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 98.38
PRK08760476 replicative DNA helicase; Provisional 98.23
PRK08506472 replicative DNA helicase; Provisional 98.22
PRK07773 886 replicative DNA helicase; Validated 98.22
PRK06321472 replicative DNA helicase; Provisional 98.21
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 98.07
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 98.07
PRK05595444 replicative DNA helicase; Provisional 98.04
PRK07004460 replicative DNA helicase; Provisional 97.91
PRK05636505 replicative DNA helicase; Provisional 97.71
PRK08006471 replicative DNA helicase; Provisional 97.65
PRK06904472 replicative DNA helicase; Validated 97.46
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.28
PRK08840464 replicative DNA helicase; Provisional 97.24
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 97.11
PF10483280 Elong_Iki1: Elongator subunit Iki1; InterPro: IPR0 96.61
PRK06749428 replicative DNA helicase; Provisional 96.57
KOG1564351 consensus DNA repair protein RHP57 [Replication, r 96.33
PF07088484 GvpD: GvpD gas vesicle protein; InterPro: IPR00978 95.94
PF07088 484 GvpD: GvpD gas vesicle protein; InterPro: IPR00978 95.45
KOG1433326 consensus DNA repair protein RAD51/RHP55 [Replicat 93.6
COG0305435 DnaB Replicative DNA helicase [DNA replication, re 93.41
PRK04296190 thymidine kinase; Provisional 93.02
COG3598402 RepA RecA-family ATPase [DNA replication, recombin 89.58
KOG1434335 consensus Meiotic recombination protein Dmc1 [Cell 88.78
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ] Back     alignment and domain information 
Probab=100.00  E-value=9.4e-85  Score=667.36  Aligned_cols=343  Identities=33%  Similarity=0.588  Sum_probs=196.6

Q ss_pred             cceeccCCC-CCCCCCCCcccCC-CCCeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcE
Q 013117           95 SSFSRNLSA-VSSSQTPGVKCGP-NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPL  172 (449)
Q Consensus        95 sSF~r~~~~-~~~~~~~GtRpsp-~g~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~v  172 (449)
                      |||+||... ...+++||||||+ |||++|||||++||+|||||||+||++|||||++++|+++|+|||+||||++||++
T Consensus         1 ~SF~kr~~~~~~~~~~pGtrpS~~~~~~~~STG~~sLD~lLGGGlPlGs~llIeEd~~t~ya~~LlkyF~AEGi~~~h~v   80 (363)
T PF05625_consen    1 MSFRKRNASQAASPPIPGTRPSPHNGQPLTSTGIPSLDDLLGGGLPLGSILLIEEDGTTDYASVLLKYFAAEGIVHGHHV   80 (363)
T ss_dssp             -------------TTBTTEEE-TTTSSEEE--S-HHHHHHTTSSEETT-EEEEEE-SS--THHHHHHHHHHHHHHH-EEE
T ss_pred             CccccccccccccCCCCccccCCCCCCEEEecCChhHHHHhcCCcccccEEEEecCCcCHHHHHHHHHHHHhccccCCeE
Confidence            699999986 5556899999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCChhhHhhcCCCCCCcccccccc-----cchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccc
Q 013117          173 LYASPSKDPRGFLGTLPSPASLKHDKSRD-----RESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPL  247 (449)
Q Consensus       173 l~vs~~e~p~~il~~LP~~~~~~~~k~~~-----~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l  247 (449)
                      ++++.   +++|+++||+++.+++.+...     +...++++|||||||+++.+.+.. ...+  ..+.|||+|||||+|
T Consensus        81 ~v~~~---~~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~mKIAWRY~~~~~~~~~-~~~~--~~~~fcH~FDLsk~~  154 (363)
T PF05625_consen   81 LVASP---PEAWLRELPGPVSESEKKEKKSKIAEESSESDEDMKIAWRYEKLPKFQSS-VGSS--SYPNFCHQFDLSKRM  154 (363)
T ss_dssp             EEE-S----GGGGGG-EEE------------------------------------------------TTSS--EETTSE-
T ss_pred             EEEeC---ChHHHhhCCCccCcchhccccccccccCCCCccCCeeEeecccCcccccc-ccCC--ccccccccccccccc
Confidence            99997   999999999998664433222     235568899999999998744321 1111  146899999999999


Q ss_pred             cccccccceeeeeeccC----CcchHHHHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCCCC--HHHHHHHHHHH
Q 013117          248 ERHYFTRQRVNCVGIQH----SKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNM--DWEMLSFIKSL  321 (449)
Q Consensus       248 ~~~~~~~~~i~~~~~~~----~~~~~~l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~--~~~ll~FL~~L  321 (449)
                      +++.+.+....+.....    ...|..+++.|.++|++....  .+.+|+||+|+||++|.|+....  .+++++|||+|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~i~~~i~~~~~~--~~~~v~RI~I~sl~SP~w~~~~~~~~~~ll~FL~~L  232 (363)
T PF05625_consen  155 DPEPLSAEIIFIPPDQPPSSSSSPYRSLLQQIQQIISKSGFS--PPSKVLRIVIPSLGSPLWYPPSASQPSELLRFLHSL  232 (363)
T ss_dssp             SS---TTTEEEE-TTS--------HHHHHHHHHHHHHH------TTTSEEEEEETTTT-TTTS-GGGGBHHHHHHHHHHH
T ss_pred             ChhhccccceEecCCCCcchhHHHHHHHHHHHHHHHHhhccC--CCCceEEEEEcCCCCcccCCcccccHHHHHHHHHHH
Confidence            98877766655543322    235888888888888854322  45789999999999999987652  44699999999


Q ss_pred             HHhhh--hcCcEEEEeeCCCCCC--cchhhhhhhhcceEEEEEeeCCC-cHHHhhhccCCCCcceeEEEeeecccccCCc
Q 013117          322 KGMVR--SSNAVVVITFPPSLLS--LSSTKRWQHMADTLLSVAAIPDE-DKELAKLLSGYQDMVGLLNVHKVARLNTQVP  396 (449)
Q Consensus       322 R~llR--~s~~taliT~p~~l~~--~~~~~~le~laDgVI~L~~f~~~-~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~  396 (449)
                      |+++|  .+++||+||+|+++|+  +.+..+|+|+||+||+|++|+++ ++++++.   |++|||||||+|||++|++++
T Consensus       233 R~LlR~~~s~~v~~iTlP~~L~~~~~~~~~~l~~l~D~vi~Le~F~~~~~~~~~~~---~~~~~Gll~v~KLp~~~sl~~  309 (363)
T PF05625_consen  233 RALLRKYSSNAVAMITLPSHLYPRSPSLVRRLEHLADGVIELESFAGSMEKETNPP---FKDYHGLLHVHKLPRLNSLGP  309 (363)
T ss_dssp             HHHHHHTTTTEEEEEEEEGTTS---HHHHHHHHHHSSEEEEEEE--HHHHHTTT-G---GG---EEEEEEE-TTHHHHT-
T ss_pred             HHHHhccCCCEEEEEEECHHHhccChHHHHHHHHhCCEEEEeecCCCccccccCCc---CcCCcEEEEEEEeccccccCC
Confidence            99999  8999999999999995  45678999999999999999986 5666655   888999999999999999999


Q ss_pred             ccccCceeeEEEcceeceEEeeccCCCCCCCCCCccCC--CCcccCCCCCCCCCC
Q 013117          397 LILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGT--SGSCSGSSKAGTLDF  449 (449)
Q Consensus       397 ~~~~~~~lAFKl~rrr~~vIE~lhLpP~d~~~~~~~~~--~~~c~~~~~~~~lDF  449 (449)
                      +.++..|||||++||| |+||+|||||||++.++....  ...|++.+++++|||
T Consensus       310 ~~~~~~~laFKl~Rkk-f~IE~lhLPPe~~~~~~~~~~~~~~~~~~~~~~~~ldF  363 (363)
T PF05625_consen  310 MTPDSSDLAFKLKRKK-FVIEPLHLPPEDGETESRSQSSASGSCSSSSTKKSLDF  363 (363)
T ss_dssp             ---EEEEEEEEE-SS--EEEEE---------------------------------
T ss_pred             CCCCccceEEEeeeee-EEEEEecCCcccCCCccccCCCCcccccCCCCCCCCCC
Confidence            9999999999998765 999999999998875544432  356777778999999

It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
>KOG3949 consensus RNA polymerase II elongator complex, subunit ELP4 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>PTZ00035 Rad51 protein; Provisional Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PF10483 Elong_Iki1: Elongator subunit Iki1; InterPro: IPR019519 Histone acetylation protein (Hap) 2 (also known as Elongator complex protein 5) is one of three histone acetyltransferases proteins that, in yeasts, are found associated with elongating forms of RNA polymerase II (Elongator) Back     alignment and domain information
>PRK06749 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair] Back     alignment and domain information
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins Back     alignment and domain information
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins Back     alignment and domain information
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair] Back     alignment and domain information
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
4a8j_A361 Crystal Structure Of The Elongator Subcomplex Elp45 3e-06
4ejs_A376 Structure Of Yeast Elongator Subcomplex Elp456 Leng 3e-06
>pdb|4A8J|A Chain A, Crystal Structure Of The Elongator Subcomplex Elp456 Length = 361 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 45/174 (25%)
Query: 111 GVKCGPNGTM-FVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH 168
           GV+  P  +    S+G ADLD ILG  G PLG+ V+V E +    H +L + F +QG+VH
Sbjct: 9   GVRPSPATSQPTTSTGSADLDSILGHXGLPLGNSVLVEEQSTTEFHSILGKLFAAQGIVH 68
Query: 169 GQPLLYASPSKDPRG------------FLGTLPS--PASLKHDKSRDRESEQE------- 207
            + +  +S  K   G            F   LP     S K  K ++  SE+E       
Sbjct: 69  NR-ISDSSADKTRNGDTHVIVLSLNQXFAKELPGIYKGSRKQXK-KNLISEEESKVTVQN 126
Query: 208 ------------KGLRIAWQYK----KYMGENQPNFDSHRDNKQ--DYCNEFDF 243
                       K L+IAW+YK    K +G   P+ D  + N +  DY ++FD 
Sbjct: 127 LNETQRSTPSRYKDLKIAWKYKLADEKRLG--SPDRDDIQQNSEYKDYNHQFDI 178
>pdb|4EJS|A Chain A, Structure Of Yeast Elongator Subcomplex Elp456 Length = 376 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
4a8j_A361 Elongator complex protein 4; transcription; 2.10A 3e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 3e-06
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 4e-06
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 2e-05
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 2e-05
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 1e-04
3bs4_A260 Uncharacterized protein PH0321; structural genomic 5e-05
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A Length = 361 Back     alignment and structure
 Score =  215 bits (548), Expect = 3e-66
 Identities = 69/369 (18%), Positives = 142/369 (38%), Gaps = 55/369 (14%)

Query: 106 SSQTPGVKCGP-NGTMFVSSGIADLDKILGG-GFPLGSLVMVMEDAEAPHHMLLLRNFMS 163
            S   GV+  P       S+G ADLD ILG  G PLG+ V+V E +    H +L + F +
Sbjct: 4   DSSHVGVRPSPATSQPTTSTGSADLDSILGHMGLPLGNSVLVEEQSTTEFHSILGKLFAA 63

Query: 164 QGLVHGQPLLYASPSKD-----------PRGFLGTLPSPASL------------------ 194
           QG+VH +    ++                + F   LP                       
Sbjct: 64  QGIVHNRISDSSADKTRNGDTHVIVLSLNQMFAKELPGIYKGSRKQMKKNLISEEESKVT 123

Query: 195 --KHDKSRDRESEQEKGLRIAWQY----KKYMGENQPNFDSHRDNKQDYCNEFDFRKPLE 248
               ++++     + K L+IAW+Y    +K +G    +        +DY ++FD    L 
Sbjct: 124 VQNLNETQRSTPSRYKDLKIAWKYKLADEKRLGSPDRDDIQQNSEYKDYNHQFDITTRLM 183

Query: 249 RHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHS 308
                 +      I  ++ ++ +       + ++ +         RI I SL  P     
Sbjct: 184 PAPIASE---LTFIAPTQPVSTILSQIEQTIKRNDKK------LIRIVIPSLLHPAMYPP 234

Query: 309 NMDW--EMLSFIKSLKGMVRSS--NAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPD 364
            M    E++  +  ++ +V+      V+  +    +++       ++M D+++++     
Sbjct: 235 KMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPLLVLLRNMFDSVINLEPFNQ 294

Query: 365 EDKELAKLLSG---YQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQ 421
           E  E  + +      +   GL+++ K+     +  + +  + ++ K  +++F  +E    
Sbjct: 295 EMTEFLERVYKSQPGKIQHGLVHILKLPVFTDRGEMRVLKSEWAFKNGRKKF-EIEQWG- 352

Query: 422 APVDGSSGS 430
            PVD + GS
Sbjct: 353 IPVDDAEGS 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Length = 247 Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235 Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525 Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525 Back     alignment and structure
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Length = 260 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
4a8j_A361 Elongator complex protein 4; transcription; 2.10A 100.0
3bs4_A260 Uncharacterized protein PH0321; structural genomic 99.77
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 99.77
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 99.59
2cvh_A220 DNA repair and recombination protein RADB; filamen 99.4
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.37
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 99.35
2z43_A324 DNA repair and recombination protein RADA; archaea 99.33
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 99.31
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 99.29
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 99.29
1xp8_A366 RECA protein, recombinase A; recombination, radior 99.28
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 99.28
1u94_A356 RECA protein, recombinase A; homologous recombinat 99.27
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 99.26
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 99.25
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 99.24
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 99.23
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 99.2
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 99.14
3io5_A333 Recombination and repair protein; storage dimer, i 99.13
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 99.12
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.1
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 99.1
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 99.1
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 99.03
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 98.94
2r6a_A454 DNAB helicase, replicative helicase; replication, 98.94
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 98.84
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 98.8
4a74_A231 DNA repair and recombination protein RADA; hydrola 98.73
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 98.7
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 98.39
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 98.33
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 81.51
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A Back     alignment and structure
Probab=100.00  E-value=1.1e-73  Score=578.57  Aligned_cols=304  Identities=22%  Similarity=0.336  Sum_probs=225.6

Q ss_pred             CCCCCcccCC-CCCeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc--------------CC
Q 013117          107 SQTPGVKCGP-NGTMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH--------------GQ  170 (449)
Q Consensus       107 ~~~~GtRpsp-~g~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~--------------g~  170 (449)
                      .++||||||| |||++|||||++||++|| ||||+|+++|||||++++|+++|+|||+|||+++              +|
T Consensus         5 ~~~pG~RpSp~~~~~~~stG~~~lD~llghgGlp~g~~~li~e~~~t~~~~~Ll~~f~aeG~~~~~~~~~~~~~~~~~~~   84 (361)
T 4a8j_A            5 SSHVGVRPSPATSQPTTSTGSADLDSILGHMGLPLGNSVLVEEQSTTEFHSILGKLFAAQGIVHNRISDSSADKTRNGDT   84 (361)
T ss_dssp             TTCTTEEECTTTCCEEECCSCHHHHHHTTSSSEETTCEEEEEECSSCCTHHHHHHHHHHHHHHHHHC--------CCCCE
T ss_pred             ccCCccccCCCCCCeeeccCCccHHHHhccCCccCCcEEEEeCCCCCcHHHHHHHHHHHHhHhhCCccccccccccCCCc
Confidence            3789999998 789999999999999999 9999999999999999999999999999999998              57


Q ss_pred             cEEEEcCCCChhhHhhcCCCCCC--cccccccc------------------cchhhccccEEEeeccccccCCCCC----
Q 013117          171 PLLYASPSKDPRGFLGTLPSPAS--LKHDKSRD------------------RESEQEKGLRIAWQYKKYMGENQPN----  226 (449)
Q Consensus       171 ~vl~vs~~e~p~~il~~LP~~~~--~~~~k~~~------------------~~~~~~~~mKIAWRY~~~~~~~~~~----  226 (449)
                      ++++++.   +++|+++||+++.  .+++|+..                  .+...+++|||||||+.+.+. +..    
T Consensus        85 h~~vvg~---~~~~~~~LP~~~~~s~~~~k~~~~~e~e~k~~v~nl~~~~~~~~~~~~~mKIAWRY~~~~~~-~s~~~~~  160 (361)
T 4a8j_A           85 HVIVLSL---NQMFAKELPGIYKGSRKQMKKNLISEEESKVTVQNLNETQRSTPSRYKDLKIAWKYKLADEK-RLGSPDR  160 (361)
T ss_dssp             EEEEECS---CGGGGGGCCEEC----------------------------------------------------------
T ss_pred             eEEEecC---cHHHHHhCCccccCcccccccccccchhhcccccccccccccCCCCCCCceEEEecCCCCcc-Ccccccc
Confidence            7777874   6899999999874  23332210                  112346789999999987532 211    


Q ss_pred             -CCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccc
Q 013117          227 -FDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQC  305 (449)
Q Consensus       227 -~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~  305 (449)
                       .+.....++.|||+|||||+|.++ ...++++|+++.  .+|..++..|.++|++      ++++|+||||+||+||.|
T Consensus       161 ~~~~~~~~~~~f~H~FDLtkrl~~~-~~~~~i~~~~~~--~~y~~lL~~I~~~i~~------~~~~ilRIvI~SLgSP~w  231 (361)
T 4a8j_A          161 DDIQQNSEYKDYNHQFDITTRLMPA-PIASELTFIAPT--QPVSTILSQIEQTIKR------NDKKLIRIVIPSLLHPAM  231 (361)
T ss_dssp             --------CTTSSCCEETTSCCSSC-CCTTTEEEECTT--SCHHHHHHHHHHHHHH------TTTSEEEEEETTTTCTTT
T ss_pred             cccccccCCcCCCcccccccccCCc-cccCcceeecCc--chHHHHHHHHHHHHhc------CCCceEEEEecCCCCccc
Confidence             111234567899999999999875 345678887653  4788888888887774      257899999999999999


Q ss_pred             cCCC--CHHHHHHHHHHHHHhhhhc--CcEEEEeeCCCCCCcchhhhhhhhcceEEEEEeeCCCcHH-HhhhccCCCC--
Q 013117          306 EHSN--MDWEMLSFIKSLKGMVRSS--NAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKE-LAKLLSGYQD--  378 (449)
Q Consensus       306 ~~~~--~~~~ll~FL~~LR~llR~s--~~taliT~p~~l~~~~~~~~le~laDgVI~L~~f~~~~~e-~~~~~~~yk~--  378 (449)
                      |.++  .++++++|||.||+|+|++  ++|||||+|+++|++.+..+++++||+||+|++|++++.+ +++.   |++  
T Consensus       232 y~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~~l~~rle~l~D~vi~L~pF~~~~~~~~~~~---yk~~p  308 (361)
T 4a8j_A          232 YPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPLLVLLRNMFDSVINLEPFNQEMTEFLERV---YKSQP  308 (361)
T ss_dssp             SCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCHHHHHHHHHHCSEEEEEEECCHHHHHHHHHH---TTTCG
T ss_pred             CCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcChHHHHHHHHhCcEEEEeeecCCchhhhcccc---cccCc
Confidence            8765  5789999999999999986  6799999999999997788999999999999999874333 3444   555  


Q ss_pred             ---cceeEEEeeecccccCCcccccCceeeEEEcceeceEEeeccCCCCCCC
Q 013117          379 ---MVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDGS  427 (449)
Q Consensus       379 ---~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vIE~lhLpP~d~~  427 (449)
                         |||||||||||++|+++++.....|||||++||| |+||+|||||+|++
T Consensus       309 ~~~~~GLl~V~KLP~l~~~g~~~~~~~dlaFKl~Rkk-f~IE~~hLPPe~~~  359 (361)
T 4a8j_A          309 GKIQHGLVHILKLPVFTDRGEMRVLKSEWAFKNGRKK-FEIEQWGIPVDDAE  359 (361)
T ss_dssp             GGCCCEEEEEEECTTHHHHTCCCCEEEEEEEEECSSC-EEEEEC--------
T ss_pred             ccccceEEEEEecccccccCCCCCCccceEEEeccee-EEEEEeccCCcCCC
Confidence               8999999999999999998888889999998665 99999999998765
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1tf7a1242 c.37.1.11 (A:14-255) Circadian clock protein KaiC 9e-07
d1tf7a2242 c.37.1.11 (A:256-497) Circadian clock protein KaiC 6e-06
d1n0wa_242 c.37.1.11 (A:) DNA repair protein Rad51, catalytic 9e-06
d1v5wa_258 c.37.1.11 (A:) Meiotic recombination protein DMC1/ 1e-04
d2i1qa2258 c.37.1.11 (A:65-322) DNA repair protein Rad51, cat 2e-04
d1szpa2251 c.37.1.11 (A:145-395) DNA repair protein Rad51, ca 3e-04
d1pzna2254 c.37.1.11 (A:96-349) DNA repair protein Rad51, cat 7e-04
d1cr2a_277 c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), 0.002
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 47.7 bits (112), Expect = 9e-07
 Identities = 23/221 (10%), Positives = 61/221 (27%), Gaps = 10/221 (4%)

Query: 122 VSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDP 181
           + + I   D I  GG P+G   +V   +     +  ++   +  +   +P ++ +  + P
Sbjct: 8   MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 67

Query: 182 RGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEF 241
           +  +       S   D ++  +  +   L  +   +        +  +  +       ++
Sbjct: 68  QDIIKNA---RSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKY 124

Query: 242 DFRKPLERHYFT------RQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRI 295
             R+       +         V    +                  +     G  A  G  
Sbjct: 125 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVE 184

Query: 296 AIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITF 336
              S       +          ++ LK +  +S+      F
Sbjct: 185 EFVSDNVVILRNVLEGERRRRTLEILK-LRGTSHMKGEYPF 224
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258 Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254 Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 99.76
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 99.67
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 99.39
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 99.3
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 99.28
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 99.22
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 99.13
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 99.03
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 98.95
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 98.9
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 98.85
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 98.27
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.76  E-value=1.3e-17  Score=155.55  Aligned_cols=218  Identities=17%  Similarity=0.184  Sum_probs=147.8

Q ss_pred             CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCccccc
Q 013117          119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDK  198 (449)
Q Consensus       119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~k  198 (449)
                      ..++|||+++||++|+||||.|++++|.+++++| +++|+.+|+++++.+++.++|+++++.++++.+.+....      
T Consensus         5 ~~ri~TG~~~LD~~l~GGi~~gsl~li~G~pGsG-KT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~------   77 (242)
T d1tf7a2           5 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTG-KTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWG------   77 (242)
T ss_dssp             CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSS-HHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTS------
T ss_pred             CCccCCCcHHHHHhhcCCCcCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcC------
Confidence            4679999999999999999999999999999888 578899999999999999999999999999888742222      


Q ss_pred             ccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHH
Q 013117          199 SRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF  278 (449)
Q Consensus       199 ~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~  278 (449)
                                     |....+...+.             ...+|.-                  ........+.+.+...
T Consensus        78 ---------------~~~~~~~~~~~-------------~~~~~~~------------------~~~~~~~~~~~~i~~~  111 (242)
T d1tf7a2          78 ---------------MDFEEMERQNL-------------LKIVCAY------------------PESAGLEDHLQIIKSE  111 (242)
T ss_dssp             ---------------CCHHHHHHTTS-------------EEECCCC------------------GGGSCHHHHHHHHHHH
T ss_pred             ---------------CChHHHhhcCc-------------eEEEEee------------------cchhhHHHHHHHHHHH
Confidence                           22221110000             0000000                  0001122333333333


Q ss_pred             HHHhhhccCCCCceeEEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCCcch---hhhhhhhcce
Q 013117          279 LAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSS---TKRWQHMADT  355 (449)
Q Consensus       279 L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~~~~---~~~le~laDg  355 (449)
                      ++        ..++.+++|||+.....  ......+..|++.|+.++++.+++++++...+......   ...+++++|+
T Consensus       112 i~--------~~~~~~vviDs~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~  181 (242)
T d1tf7a2         112 IN--------DFKPARIAIDSLSALAR--GVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDT  181 (242)
T ss_dssp             HH--------TTCCSEEEEECHHHHTS--SSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSE
T ss_pred             HH--------hcCCceeeeecchhhhc--CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecce
Confidence            33        14578999999986533  22467899999999999999999999988766443321   3467999999


Q ss_pred             EEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcceeceEEe
Q 013117          356 LLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLE  417 (449)
Q Consensus       356 VI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vIE  417 (449)
                      ||.|+.....           .+....+.|.|+ +-.   +  ++..-+.|.+.. .++.|.
T Consensus       182 vi~l~~~~~~-----------~~~~R~i~v~K~-R~~---~--~~~~~~~f~I~~-~Gi~i~  225 (242)
T d1tf7a2         182 IILLQYVEIR-----------GEMSRAINVFKM-RGS---W--HDKAIREFMISD-KGPDIK  225 (242)
T ss_dssp             EEEEEEEEET-----------TEEEEEEEEEEE-SSS---C--CCCBCEEEEECS-SCEEEE
T ss_pred             EEEEEEeecC-----------CceEEEEEEEec-CCC---C--CCCeEEEEEEeC-CcEEEc
Confidence            9999875431           123467889997 221   1  233346788864 566554
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure