Citrus Sinensis ID: 013174

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGMPRIPEQPCYDN
cccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccc
cccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHEcccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccHccccccccccc
mavtdtenpllgetTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGeksiaglgipektsgTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEiagnlslgdqapsvdesdltLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVtevhpslndstgvqsksisNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLwnlmdtpseerrlfdhvtcnisayvdgvtvpgALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLidsgnvepaeLLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEeswledynrdenrynasrgahlnLKRAEKARILVNkipgmpripeqpcydn
mavtdtenpllgetTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHpslndstgvqsksisndTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNasrgahlnlkraeKARILvnkipgmpripeqpcydn
MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGMPRIPEQPCYDN
*************TTCSSLLHKLQEIWDEVG*******KMLLQIEKECLDVYKRKVEQAA**RAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ*******FSDVQSQIQKICGEIAGNL************************************LHKVLEFVSTVHDLCGVLGMDFFSTVTEVH******************LARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNV**************************LDKVEKWMSACEEESWLEDY**********************ARILVN****************
*************TTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQ*****************E*************************IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLG**APSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTC*****************DLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDY********************EKARILVNKIPGMPRIPE******
*********LLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIA*********KEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGMPRIPEQPCYDN
*********LLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIA********SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAG*******APSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLN******SKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGMPRIPEQPCYDN
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MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECxxxxxxxxxxxxxxxxxxxxxxxxxxxxLASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDExxxxxxxxxxxxxxxxxxxxxxxxxxxxVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALxxxxxxxxxxxxxxxxxxxxxWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLxxxxxxxxxxxxxxxxxxxxxIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGMPRIPEQPCYDN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query448 2.2.26 [Sep-21-2011]
Q9FLP0 587 65-kDa microtubule-associ yes no 0.966 0.737 0.819 0.0
Q8LEG3 578 65-kDa microtubule-associ no no 0.966 0.749 0.789 0.0
Q9SIS3 608 65-kDa microtubule-associ no no 0.935 0.689 0.508 1e-123
Q8L836 603 65-kDa microtubule-associ no no 0.939 0.698 0.515 1e-121
Q9ZVJ3 550 65-kDa microtubule-associ no no 0.921 0.750 0.523 1e-115
Q9C7G0 562 65-kDa microtubule-associ no no 0.944 0.752 0.496 1e-111
Q9FHM4 707 65-kDa microtubule-associ no no 0.955 0.605 0.488 1e-108
Q9LZY0 677 65-kDa microtubule-associ no no 0.933 0.617 0.456 2e-99
Q4PSA3 549 65-kDa microtubule-associ no no 0.944 0.770 0.449 2e-90
Q99K43 603 Protein regulator of cyto yes no 0.850 0.631 0.258 8e-09
>sp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana GN=MAP65-1 PE=1 SV=1 Back     alignment and function desciption
 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/437 (81%), Positives = 404/437 (92%), Gaps = 4/437 (0%)

Query: 1   MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAA 60
           MAVTDTE+P LGE TC +LL KLQEIWDEVGE+D+ERDK+LLQIE+ECLDVYKRKVEQAA
Sbjct: 1   MAVTDTESPHLGEITCGTLLEKLQEIWDEVGESDDERDKLLLQIEQECLDVYKRKVEQAA 60

Query: 61  KSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQK 120
           KSRA+LLQ LSDA  EL+SL  +LG+KS+  +GIP+K+SGTIKEQLAAIAPALEQLW+QK
Sbjct: 61  KSRAELLQTLSDANAELSSLTMSLGDKSL--VGIPDKSSGTIKEQLAAIAPALEQLWQQK 118

Query: 121 EERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180
           EERV+EFSDVQSQIQKICG+IAG LS  ++ P VDESDL+LKKLD++Q+QLQELQKEKSD
Sbjct: 119 EERVREFSDVQSQIQKICGDIAGGLS--NEVPIVDESDLSLKKLDDFQSQLQELQKEKSD 176

Query: 181 RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240
           RL KVLEFVSTVHDLC VLG+DF STVTEVHPSL++ T VQSKSISN+TL+RLAKTVL L
Sbjct: 177 RLRKVLEFVSTVHDLCAVLGLDFLSTVTEVHPSLDEDTSVQSKSISNETLSRLAKTVLTL 236

Query: 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLI 300
           K+DKKQRL KLQELATQLIDLWNLMDTP EER LFDHVTCNIS+ VD VTVPGALA DLI
Sbjct: 237 KDDKKQRLQKLQELATQLIDLWNLMDTPDEERELFDHVTCNISSSVDEVTVPGALARDLI 296

Query: 301 EQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEP 360
           EQAEVEV+RLDQLKASRMKEIAFK+Q ELEEI+ARAH+E++P +ARE+IM+LIDSGNVEP
Sbjct: 297 EQAEVEVDRLDQLKASRMKEIAFKKQSELEEIYARAHVEVNPESARERIMSLIDSGNVEP 356

Query: 361 AELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLN 420
            ELLADMD+QI+KAKEEA SRK+ILD+VEKWMSACEEESWLEDYNRD+NRY+ASRGAHLN
Sbjct: 357 TELLADMDSQISKAKEEAFSRKDILDRVEKWMSACEEESWLEDYNRDQNRYSASRGAHLN 416

Query: 421 LKRAEKARILVNKIPGM 437
           LKRAEKARILV+KIP M
Sbjct: 417 LKRAEKARILVSKIPAM 433
Microtubule-associated protein that bundle and stabilize adjacent microtubules (MT) of the cell cortex. Enhances MT nucleation. Can also bind to tubulin dimers and promotes their polymerization. Confers MT resistance to the drug propyzamide and cold conditions. Plays a role in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. Represses metaphase spindle organization and the transition to anaphase in dephosphorylated active form. Promotes the formation of a planar network of antiparallel microtubules. May be involved in stomatal movement modulation by regulating the dynamic and arrangement of cortical MT.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LEG3|MA652_ARATH 65-kDa microtubule-associated protein 2 OS=Arabidopsis thaliana GN=MAP65-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SIS3|MA656_ARATH 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1 Back     alignment and function description
>sp|Q8L836|MA657_ARATH 65-kDa microtubule-associated protein 7 OS=Arabidopsis thaliana GN=MAP65-7 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVJ3|MA655_ARATH 65-kDa microtubule-associated protein 5 OS=Arabidopsis thaliana GN=MAP65-5 PE=1 SV=2 Back     alignment and function description
>sp|Q9C7G0|MA658_ARATH 65-kDa microtubule-associated protein 8 OS=Arabidopsis thaliana GN=MAP65-8 PE=1 SV=2 Back     alignment and function description
>sp|Q9FHM4|MA653_ARATH 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZY0|MA654_ARATH 65-kDa microtubule-associated protein 4 OS=Arabidopsis thaliana GN=MAP65-4 PE=1 SV=2 Back     alignment and function description
>sp|Q4PSA3|MA659_ARATH 65-kDa microtubule-associated protein 9 OS=Arabidopsis thaliana GN=MAP65-9 PE=2 SV=1 Back     alignment and function description
>sp|Q99K43|PRC1_MOUSE Protein regulator of cytokinesis 1 OS=Mus musculus GN=Prc1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
356552809 582 PREDICTED: 65-kDa microtubule-associated 0.970 0.747 0.878 0.0
356552811 590 PREDICTED: 65-kDa microtubule-associated 0.970 0.737 0.878 0.0
356501572 582 PREDICTED: 65-kDa microtubule-associated 0.970 0.747 0.874 0.0
255580760 583 Protein regulator of cytokinesis, putati 0.968 0.744 0.881 0.0
359494079 582 PREDICTED: LOW QUALITY PROTEIN: 65-kDa m 0.968 0.745 0.871 0.0
297737498465 unnamed protein product [Vitis vinifera] 0.968 0.933 0.871 0.0
224056361 581 predicted protein [Populus trichocarpa] 0.968 0.746 0.869 0.0
357494709 582 Microtubule-associated protein MAP65-1a 0.968 0.745 0.858 0.0
356553539 627 PREDICTED: LOW QUALITY PROTEIN: 65-kDa m 0.970 0.693 0.853 0.0
449463232 581 PREDICTED: 65-kDa microtubule-associated 0.968 0.746 0.851 0.0
>gi|356552809|ref|XP_003544755.1| PREDICTED: 65-kDa microtubule-associated protein 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/437 (87%), Positives = 413/437 (94%), Gaps = 2/437 (0%)

Query: 1   MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAA 60
           MAVT+ +NPLLGE TC SLL KLQEIWDEVGE+DE+RDKMLLQ+E+ECLDVYKRKVEQAA
Sbjct: 1   MAVTEAQNPLLGENTCGSLLKKLQEIWDEVGESDEQRDKMLLQLEQECLDVYKRKVEQAA 60

Query: 61  KSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQK 120
           KSRAQLLQALSDAK+EL++LLSALGEKS AG  IPE TSGTIKEQLAAIAP LEQLW+QK
Sbjct: 61  KSRAQLLQALSDAKLELSTLLSALGEKSFAG--IPENTSGTIKEQLAAIAPVLEQLWQQK 118

Query: 121 EERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180
           EER+KEFSDVQSQIQ+ICGEIAGNL+L D +P+VDESDL+LKKLDEYQ++LQELQKEKS+
Sbjct: 119 EERIKEFSDVQSQIQQICGEIAGNLNLNDVSPAVDESDLSLKKLDEYQSELQELQKEKSE 178

Query: 181 RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240
           RLHKVLEFVSTVHDLC VLGMDFFST TEVHPSLNDSTGVQSKSISNDTLARLAKTVL L
Sbjct: 179 RLHKVLEFVSTVHDLCAVLGMDFFSTATEVHPSLNDSTGVQSKSISNDTLARLAKTVLTL 238

Query: 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLI 300
           KEDKKQRLHKLQELA+QLIDLWNLMDT  EERRLFDHVTCN+SA VD VTVPGALALDLI
Sbjct: 239 KEDKKQRLHKLQELASQLIDLWNLMDTHPEERRLFDHVTCNMSASVDEVTVPGALALDLI 298

Query: 301 EQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEP 360
           EQAEVEVERLDQLKASRMKEIAFK+Q ELEEIFARAHIE+DP AAREKIM LIDSGN+EP
Sbjct: 299 EQAEVEVERLDQLKASRMKEIAFKKQAELEEIFARAHIEVDPDAAREKIMALIDSGNIEP 358

Query: 361 AELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLN 420
            ELLADMDNQIAKAKEEA S+K+ILDKVEKWMSAC+EESWLEDYNRDENRYNASRGAH+N
Sbjct: 359 TELLADMDNQIAKAKEEAVSQKDILDKVEKWMSACDEESWLEDYNRDENRYNASRGAHIN 418

Query: 421 LKRAEKARILVNKIPGM 437
           LKRAEKARILVNKIP +
Sbjct: 419 LKRAEKARILVNKIPAL 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356552811|ref|XP_003544756.1| PREDICTED: 65-kDa microtubule-associated protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356501572|ref|XP_003519598.1| PREDICTED: 65-kDa microtubule-associated protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255580760|ref|XP_002531201.1| Protein regulator of cytokinesis, putative [Ricinus communis] gi|223529203|gb|EEF31178.1| Protein regulator of cytokinesis, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359494079|ref|XP_002277391.2| PREDICTED: LOW QUALITY PROTEIN: 65-kDa microtubule-associated protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737498|emb|CBI26699.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224056361|ref|XP_002298820.1| predicted protein [Populus trichocarpa] gi|222846078|gb|EEE83625.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357494709|ref|XP_003617643.1| Microtubule-associated protein MAP65-1a [Medicago truncatula] gi|355518978|gb|AET00602.1| Microtubule-associated protein MAP65-1a [Medicago truncatula] Back     alignment and taxonomy information
>gi|356553539|ref|XP_003545112.1| PREDICTED: LOW QUALITY PROTEIN: 65-kDa microtubule-associated protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449463232|ref|XP_004149338.1| PREDICTED: 65-kDa microtubule-associated protein 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2116267 578 MAP65-2 "AT4G26760" [Arabidops 0.966 0.749 0.789 3.1e-177
TAIR|locus:2059713 608 ATMAP65-6 [Arabidopsis thalian 0.946 0.697 0.509 7.3e-114
TAIR|locus:2006737 603 MAP65-7 "AT1G14690" [Arabidops 0.941 0.699 0.518 2.9e-112
TAIR|locus:2153152 707 PLE "AT5G51600" [Arabidopsis t 0.955 0.605 0.488 1e-107
TAIR|locus:2167978 549 MAP65-9 "microtubule-associate 0.944 0.770 0.449 5.9e-96
ZFIN|ZDB-GENE-040426-777 606 prc1b "protein regulator of cy 0.573 0.424 0.202 2.7e-14
UNIPROTKB|F1NGV8 607 PRC1 "Uncharacterized protein" 0.823 0.607 0.250 5e-14
UNIPROTKB|F1P2A8261 PRC1 "Uncharacterized protein" 0.558 0.957 0.255 2.3e-11
UNIPROTKB|F8W9B5 566 PRC1 "Protein regulator of cyt 0.796 0.630 0.236 4.4e-11
UNIPROTKB|H9KV59 606 PRC1 "Protein regulator of cyt 0.796 0.589 0.236 5e-11
TAIR|locus:2116267 MAP65-2 "AT4G26760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1721 (610.9 bits), Expect = 3.1e-177, P = 3.1e-177
 Identities = 345/437 (78%), Positives = 387/437 (88%)

Query:     1 MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAA 60
             MAVT+ ENPLLGE TC +LL KLQEIWDEVGE+DEERDK+LLQIE+ECL+VYK+KVE AA
Sbjct:     1 MAVTEAENPLLGEITCGTLLQKLQEIWDEVGESDEERDKLLLQIEEECLNVYKKKVELAA 60

Query:    61 KSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQK 120
             KSRA+LLQ LSDA +EL++L +ALGEKS   + IP+KTSGTIKEQL+AIAPALEQLW+QK
Sbjct:    61 KSRAELLQTLSDATVELSNLTTALGEKSY--IDIPDKTSGTIKEQLSAIAPALEQLWQQK 118

Query:   121 EERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180
             EERV+ FSDVQSQIQKIC EIAG L+ G     VDE+DL+LK+LD++Q +LQELQKEKSD
Sbjct:   119 EERVRAFSDVQSQIQKICEEIAGGLNNGPHV--VDETDLSLKRLDDFQRKLQELQKEKSD 176

Query:   181 RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240
             RL KVLEFVSTVHDLC VL +DF STVTEVHPSL+++ GVQ+KSISN+TLARLAKTVL L
Sbjct:   177 RLQKVLEFVSTVHDLCAVLRLDFLSTVTEVHPSLDEANGVQTKSISNETLARLAKTVLTL 236

Query:   241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLI 300
             KEDK QRL KLQELATQL DLWNLMDT  EER LFDHVT NISA V  VT  GALALDLI
Sbjct:   237 KEDKMQRLKKLQELATQLTDLWNLMDTSDEERELFDHVTSNISASVHEVTASGALALDLI 296

Query:   301 EQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEP 360
             EQAEVEV+RLDQLK+SRMKEIAFK+Q ELEEI+ARAHIEI P   RE+IM+LID+GN EP
Sbjct:   297 EQAEVEVDRLDQLKSSRMKEIAFKKQSELEEIYARAHIEIKPEVVRERIMSLIDAGNTEP 356

Query:   361 AELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLN 420
              ELLADMD+QIAKAKEEA SRKEILD+VEKWMSACEEESWLEDYNRD+NRY+ASRGAHLN
Sbjct:   357 TELLADMDSQIAKAKEEAFSRKEILDRVEKWMSACEEESWLEDYNRDQNRYSASRGAHLN 416

Query:   421 LKRAEKARILVNKIPGM 437
             LKRAEKARILV+KI  M
Sbjct:   417 LKRAEKARILVSKITAM 433
GO:0003674 "molecular_function" evidence=ND
GO:0009524 "phragmoplast" evidence=IDA
GO:0009574 "preprophase band" evidence=IDA
GO:0055028 "cortical microtubule" evidence=IDA
GO:0000910 "cytokinesis" evidence=IGI
GO:0005819 "spindle" evidence=IDA
GO:0005874 "microtubule" evidence=IDA
GO:0008283 "cell proliferation" evidence=IGI;RCA
GO:0048528 "post-embryonic root development" evidence=IGI
GO:0072686 "mitotic spindle" evidence=IDA
GO:0051302 "regulation of cell division" evidence=IGI
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000280 "nuclear division" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0007000 "nucleolus organization" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051258 "protein polymerization" evidence=RCA
TAIR|locus:2059713 ATMAP65-6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006737 MAP65-7 "AT1G14690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153152 PLE "AT5G51600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167978 MAP65-9 "microtubule-associated protein 65-9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-777 prc1b "protein regulator of cytokinesis 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGV8 PRC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2A8 PRC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F8W9B5 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H9KV59 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FLP0MA651_ARATHNo assigned EC number0.81920.96650.7376yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
pfam03999 619 pfam03999, MAP65_ASE1, Microtubule associated prot 2e-44
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family) Back     alignment and domain information 
 Score =  163 bits (414), Expect = 2e-44
 Identities = 105/418 (25%), Positives = 185/418 (44%), Gaps = 38/418 (9%)

Query: 36  ERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIP 95
            ++  L  I+       K   E+++  +  +L+ ++  + E+  L +  G +      + 
Sbjct: 1   LQNLNLADIKIHYSSFEKDLKEESSTKKQAILKDIAVLRAEIKRLSAENGIEQDISNSLL 60

Query: 96  EKTSGTIKEQLAAIAPA---------------LEQLWKQKEERVKEFSDVQSQIQKICGE 140
            K    +  +   +                  LE L KQK ER  E  ++  Q+ ++C E
Sbjct: 61  HKEPLQLLSEKDILQRPKSFPLGVWLLKLRDQLESLRKQKAERRAEIKELLHQLLQLCNE 120

Query: 141 IAGNLSLGDQAPSVDESDL-TLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVL 199
           + G   L       D   L  L++L+ ++ +L EL++EK  RL +V     ++  LC +L
Sbjct: 121 L-GEPPLSLLRKDADPLSLPNLEELEHFRERLGELREEKVRRLEEVDSLKQSIKSLCSLL 179

Query: 200 GMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259
           G     T  E    L+         ++ +T+ +L K +  L   KKQR  K+ +L  Q+ 
Sbjct: 180 GTPPARTDFE-QDVLSYGEIPNDHCVTRETIDKLDKMLENLAAQKKQRADKIDDLREQIQ 238

Query: 260 DLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMK 319
           +LWN +    EE++ F      +S            ++  +E+   EVERL+ LK   +K
Sbjct: 239 ELWNRLQISDEEQKRFVREATILSQE----------SIKRLEE---EVERLEALKKQNLK 285

Query: 320 EIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAH 379
           +     + E++E++       +    R+      +    E  +LL   +N+I + KEE  
Sbjct: 286 KFIEDLRIEIQELWDLLFYSEE---QRKSFTPYYEELYTE--QLLEQHENEIKRLKEEYS 340

Query: 380 SRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGM 437
           S KEIL+ +EKW S  E    LE    D NR+N +RG HL LK  ++ + L  K+P +
Sbjct: 341 SNKEILELIEKWESLWERMEELEAKANDPNRFN-NRGGHL-LKEEKERKRLTRKLPKV 396

Length = 619

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
KOG4302 660 consensus Microtubule-associated protein essential 100.0
PF03999 619 MAP65_ASE1: Microtubule associated protein (MAP65/ 100.0
KOG4302 660 consensus Microtubule-associated protein essential 99.9
PF03999 619 MAP65_ASE1: Microtubule associated protein (MAP65/ 99.84
PRK04778569 septation ring formation regulator EzrA; Provision 92.15
PF00038312 Filament: Intermediate filament protein; InterPro: 90.34
KOG09331174 consensus Structural maintenance of chromosome pro 89.7
PHA02562562 46 endonuclease subunit; Provisional 88.5
TIGR00634563 recN DNA repair protein RecN. All proteins in this 84.2
PF10239318 DUF2465: Protein of unknown function (DUF2465); In 83.68
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 83.18
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-78  Score=622.93  Aligned_cols=436  Identities=56%  Similarity=0.819  Sum_probs=402.5

Q ss_pred             CCCCCCCCCCCccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174            1 MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASL   80 (448)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L   80 (448)
                      |+.++...+....++|++++.+|+.||++||+++++|++++..|++||.++|+.+|+++...+++|.++|++++++++.|
T Consensus         1 ~~~~~~~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l   80 (660)
T KOG4302|consen    1 TVMMDSEVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDL   80 (660)
T ss_pred             CCccccchhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCC
Q 013174           81 LSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLT  160 (448)
Q Consensus        81 ~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS  160 (448)
                      |++||++++.. ..+++..+||.+++..+.+.++.|+++|++|+.+|.++..+|+.||.+||++.. ...++.++..|+|
T Consensus        81 ~s~l~~~~~~~-~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~-~~~~~~~D~~dls  158 (660)
T KOG4302|consen   81 CSALGEPSIIG-EISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED-LPSFLIADESDLS  158 (660)
T ss_pred             HHHhCCccccc-ccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcccccCccccc
Confidence            99999999865 235567889999999999999999999999999999999999999999999921 1114456788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Q 013174          161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL  240 (448)
Q Consensus       161 ~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L  240 (448)
                      ++.|+.|+.+|.+|+++|..|+++|.+++.+|+.||.+||++|...+..+||++.+..+..++++|++++++|...+..|
T Consensus       159 l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l  238 (660)
T KOG4302|consen  159 LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKL  238 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888888999988776678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHH
Q 013174          241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE  320 (448)
Q Consensus       241 ~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~  320 (448)
                      +++|.+|++++++|+.+|..||++|++|++||..|..+.      +++++.++++|.++|..++.||.||+++|+++||+
T Consensus       239 ~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKe  312 (660)
T KOG4302|consen  239 KEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKE  312 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999998763      68899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHH
Q 013174          321 IAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESW  400 (448)
Q Consensus       321 li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~~e~~~  400 (448)
                      ||.++|.+|++||+.+||+.+..........++++|..+..++|+.++.+|.++|+++.+||+|+++|++|.++|+++.|
T Consensus       313 li~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~  392 (660)
T KOG4302|consen  313 LIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESW  392 (660)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999432333334556688888888888888889999999999999999999999999999999


Q ss_pred             HHHhcCCchhhhccCCchhhhHHHHHHhHHhcccCCCcccccCC
Q 013174          401 LEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGMPRIPEQP  444 (448)
Q Consensus       401 le~~~~D~~R~~~~Rg~~~~Ll~eEk~Rk~i~klP~~~e~L~~~  444 (448)
                      |++|++|.|||+++||||+.|+||||+|++|+|+|+|++.|...
T Consensus       393 lee~n~D~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k  436 (660)
T KOG4302|consen  393 LEEYNRDSNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAK  436 (660)
T ss_pred             HhcccchhhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHH
Confidence            99999999999977999999999999999999999999988654

>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
3nrx_A130 Protein regulator of cytokinesis 1; spectrin fold, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A Length = 130 Back     alignment and structure
 Score = 70.0 bits (171), Expect = 1e-14
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 372 AKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILV 431
           A  K      KE+ + V+KW          E    D NR+    G   NL + EK R  +
Sbjct: 3   AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFTNRGG---NLLKEEKQRAKL 59

Query: 432 NKIPGMPRIPEQ 443
            K+  +P++ E+
Sbjct: 60  QKM--LPKLEEE 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
3nrx_A130 Protein regulator of cytokinesis 1; spectrin fold, 99.76
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A Back     alignment and structure
Probab=99.76  E-value=5.1e-20  Score=154.80  Aligned_cols=71  Identities=28%  Similarity=0.391  Sum_probs=63.0

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHhHHHHHHHHhcCCchhhhccCCchhhhHHHHHHhHHhcc-cCCCcccccCCc
Q 013174          372 AKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNK-IPGMPRIPEQPC  445 (448)
Q Consensus       372 ~~lk~~~~~~k~il~~v~~~~~l~~e~~~le~~~~D~~R~~~~Rg~~~~Ll~eEk~Rk~i~k-lP~~~e~L~~~~  445 (448)
                      ++|+++|++++|||++|++|+.+|+++..|+++++|||||+ ||||  +|++|||+|++|+| ||+|+++|+..+
T Consensus         3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~-~Rgg--~LlreEK~Rk~i~k~lP~l~~~L~~~i   74 (130)
T 3nrx_A            3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKMLPKLEEELKARI   74 (130)
T ss_dssp             CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhh-ccch--hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999 9999  99999999999999 999999997653

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00