Citrus Sinensis ID: 013195

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF
cccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccEEccccccHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEcccccccccccEEccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHccccEEEccEEEccccccHHHHHHHHHHHHHHcccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHcccccEEEEEEEEEcccccEEEEcccc
cccHHHHHccccccccccccccccccccccHHHccccccEEEccccccccHHcccccccEEEEEEcccccccccHHHHHHHHHHccccccccHHHccEEEEEcHHHHHcHHHHHHHHHHHcHHHccEEEEEcccccHHHHHHHccccEEEccccHcHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHHHHccccccEEEEcccccHHccHHHHHHHHHHcccccccHEccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccEEEccEEEccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccHccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccEEccccc
MEDIEDLlagsggggappgfrlpinavgvnpkynknkprlhdnhlsktgslspkipgtetiymktfgcshnqsdseyMAGQLSAFGyaltdnseeaDIWLINtctvkspsqsaMDTLIAKCksakkplvvagcvpqgsrdlkelegvsivGVQQIDRVVEVVEETLKGHEVRllhrkklpaldlpkvrrnkfveilpinvgclgactycktkharghlgsyTVESLVGRVRTVIADGVKEvwlssedtgaygrdigVNLPILLNAIVaelppdgstmlrigmtnppFILEHLKEIAEVlrhpcvysflhvpvqsgsDAVLSAMNREYTLSDFRTVVDTLIELvpgmqiatdiicgfpgetdedFNQTVNLIkeykfpqvhisqfyprpgtpaarmkkvpsAVVKKRSRELTSVFEAftpylgmegrvERIWITEIAADGIHLVRLEQF
MEDIEDLlagsggggappgfRLPINAVGVNPKYNknkprlhdnhlsktgslspkipGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVpqgsrdlkelegvsivgvqqiDRVVEVVEETLkghevrllhrkklpaldlpkvrrNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFyprpgtpaarmKKVPSavvkkrsreltsvfeaftpylgmegRVERIWITEIAADGIHLVRLEQF
MEDIEDLLagsggggappgFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF
***********************I**********************************ETIYMKTFGCSHN****EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP***AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP**********************ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRL***
*EDIEDLLA***************************************************IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG*********
MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT****************SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF
*****DLLAGSGGGGAPPGFRLPINAVGVNPKYN*NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIA***I********
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MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query448 2.2.26 [Sep-21-2011]
Q6P4Y0553 Threonylcarbamoyladenosin yes no 0.975 0.790 0.536 1e-139
Q5VV42 579 Threonylcarbamoyladenosin yes no 0.986 0.763 0.525 1e-138
Q6NS26 556 Threonylcarbamoyladenosin N/A no 0.975 0.785 0.533 1e-137
Q91WE6 578 Threonylcarbamoyladenosin yes no 0.875 0.678 0.566 1e-136
Q6PG34547 Threonylcarbamoyladenosin yes no 0.915 0.749 0.536 1e-134
Q7K4W1552 Threonylcarbamoyladenosin yes no 0.861 0.699 0.571 1e-131
Q291H5553 Threonylcarbamoyladenosin yes no 0.861 0.698 0.578 1e-127
Q8MXQ7 425 Threonylcarbamoyladenosin yes no 0.691 0.729 0.539 1e-93
O59545425 Probable threonylcarbamoy yes no 0.812 0.856 0.392 4e-77
Q9UXX9425 Probable threonylcarbamoy yes no 0.801 0.844 0.394 8e-77
>sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis GN=cdkal1 PE=2 SV=1 Back     alignment and function desciption
 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/457 (53%), Positives = 329/457 (71%), Gaps = 20/457 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
           ++DIED+++ +      P  R     N V    K NKNK +  +     T      IPGT
Sbjct: 9   LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + I+++T+GCSHN SD EYMAGQL+A+GY++T+  E+AD+WL+N+CTVKSP++      I
Sbjct: 60  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            K + A K +V++GCVPQ     + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179

Query: 179 LPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                     LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY VE LV R  
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
               +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELS 417

Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            +F +++PY    G  + + +TE + D  + V   +F
Sbjct: 418 QLFHSYSPYDHKIGEEQHVLVTEESFDSQYYVSHNRF 454
Catalyzes the methylthiolation of N6-threonylcarbamoyladenosine (t(6)A), leading to the formation of 2-methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q5VV42|CDKAL_HUMAN Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo sapiens GN=CDKAL1 PE=1 SV=1 Back     alignment and function description
>sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis GN=cdkal1 PE=2 SV=1 Back     alignment and function description
>sp|Q91WE6|CDKAL_MOUSE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus musculus GN=Cdkal1 PE=2 SV=1 Back     alignment and function description
>sp|Q6PG34|CDKAL_DANRE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Danio rerio GN=cdkal1 PE=2 SV=1 Back     alignment and function description
>sp|Q7K4W1|CDKAL_DROME Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila melanogaster GN=CG6550 PE=2 SV=1 Back     alignment and function description
>sp|Q291H5|CDKAL_DROPS Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila pseudoobscura pseudoobscura GN=GA19679 PE=3 SV=1 Back     alignment and function description
>sp|Q8MXQ7|CDKAL_CAEEL Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Caenorhabditis elegans GN=Y92H12BL.1 PE=3 SV=2 Back     alignment and function description
>sp|O59545|AMTAB_PYRHO Probable threonylcarbamoyladenosine tRNA methylthiotransferase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1875 PE=3 SV=2 Back     alignment and function description
>sp|Q9UXX9|AMTAB_PYRAB Probable threonylcarbamoyladenosine tRNA methylthiotransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB17290 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
359493166 622 PREDICTED: CDK5 regulatory subunit-assoc 0.979 0.705 0.869 0.0
449447617 635 PREDICTED: threonylcarbamoyladenosine tR 0.986 0.696 0.855 0.0
255561612 630 radical sam protein, putative [Ricinus c 0.988 0.703 0.860 0.0
449506818 635 PREDICTED: threonylcarbamoyladenosine tR 0.986 0.696 0.848 0.0
224135639 612 predicted protein [Populus trichocarpa] 0.955 0.699 0.855 0.0
297839059 602 radical SAM domain-containing protein [A 0.984 0.732 0.826 0.0
18409989 601 Methylthiotransferase [Arabidopsis thali 0.984 0.733 0.833 0.0
356542899 609 PREDICTED: CDKAL1-like protein-like [Gly 0.964 0.709 0.824 0.0
357111240 624 PREDICTED: CDK5 regulatory subunit-assoc 0.975 0.700 0.802 0.0
242075846 623 hypothetical protein SORBIDRAFT_06g01704 0.966 0.695 0.795 0.0
>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/443 (86%), Positives = 412/443 (93%), Gaps = 4/443 (0%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           MEDIEDLL G+G GGAPPGFRLP+ +VG  PK NKNKP L      K+      IPGT+T
Sbjct: 1   MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLE----KKSHIQDYIIPGTQT 56

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IYMKTFGCSHNQSDSEYMAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K
Sbjct: 57  IYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITK 116

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 117 GRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 176

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
           ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE
Sbjct: 177 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKE 236

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           +WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLR
Sbjct: 237 IWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLR 296

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           HPCVYSFLHVPVQSGSDA+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 297 HPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGET 356

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
           DE+F QTV+LI+EY+FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+FEAFTPY
Sbjct: 357 DEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPY 416

Query: 421 LGMEGRVERIWITEIAADGIHLV 443
            GMEGRVERIWI+EIA DGIHLV
Sbjct: 417 NGMEGRVERIWISEIATDGIHLV 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis] gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa] gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana] gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana] gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana] gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana] gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor] gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2030342 601 AT1G72090 [Arabidopsis thalian 0.984 0.733 0.82 1.3e-194
UNIPROTKB|E1BRH0 568 CDKAL1 "Uncharacterized protei 0.875 0.690 0.586 7.8e-126
UNIPROTKB|Q5VV42 579 CDKAL1 "Threonylcarbamoyladeno 0.986 0.763 0.525 2.1e-125
UNIPROTKB|E2RAI1 578 CDKAL1 "CDK5 regulatory subuni 0.930 0.721 0.545 6.3e-124
UNIPROTKB|F1MAW5 578 CDKAL1 "Uncharacterized protei 0.984 0.762 0.523 8e-124
UNIPROTKB|F1RUG0 578 CDKAL1 "Uncharacterized protei 0.979 0.759 0.522 1e-123
MGI|MGI:1921765 578 Cdkal1 "CDK5 regulatory subuni 0.984 0.762 0.523 2.1e-123
UNIPROTKB|Q291H5553 GA19679 "Threonylcarbamoyladen 0.861 0.698 0.578 2.8e-121
ZFIN|ZDB-GENE-040426-1443547 cdkal1 "CDK5 regulatory subuni 0.910 0.745 0.543 5.8e-121
FB|FBgn0034214552 CG6550 [Drosophila melanogaste 0.861 0.699 0.571 1.1e-119
TAIR|locus:2030342 AT1G72090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1885 (668.6 bits), Expect = 1.3e-194, P = 1.3e-194
 Identities = 369/450 (82%), Positives = 398/450 (88%)

Query:     1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
             MEDIEDLL           FRLP+NAVG+NPK NK+K R+         S   SL+P   
Sbjct:     1 MEDIEDLLAGGVGGAPPG-FRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58

Query:    54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
             KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+  EEAD+WLINTCTVKSPSQSA
Sbjct:    59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118

Query:   114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
             M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct:   119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178

Query:   174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
             L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct:   179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238

Query:   234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct:   239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298

Query:   294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
             EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct:   299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358

Query:   354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
             CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct:   359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418

Query:   414 FEAFTPYLGMEGRVERIWITEIAADGIHLV 443
             FEAF PY GME R ERIWITE+A DGIHLV
Sbjct:   419 FEAFAPYTGMECREERIWITEVATDGIHLV 448
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009451 "RNA modification" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
GO:0043412 "macromolecule modification" evidence=IEA
GO:0051536 "iron-sulfur cluster binding" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0016020 "membrane" evidence=IDA
UNIPROTKB|E1BRH0 CDKAL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VV42 CDKAL1 "Threonylcarbamoyladenosine tRNA methylthiotransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAI1 CDKAL1 "CDK5 regulatory subunit-associated protein 1-like 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAW5 CDKAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUG0 CDKAL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1921765 Cdkal1 "CDK5 regulatory subunit associated protein 1-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q291H5 GA19679 "Threonylcarbamoyladenosine tRNA methylthiotransferase" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1443 cdkal1 "CDK5 regulatory subunit associated protein 1-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0034214 CG6550 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3M8N9MIAB_ANAVT2, ., -, ., -, ., -0.32070.81470.8039yesno
Q7NE65MIAB_GLOVI2, ., -, ., -, ., -0.33920.82360.8367yesno
Q6P4Y0CDKAL_XENTR2, ., -, ., -, ., -0.53610.97540.7902yesno
O29021AMTAB_ARCFU2, ., -, ., -, ., -0.33830.83920.8867yesno
B2V930MIAB_SULSY2, ., -, ., -, ., -0.34940.82360.8443yesno
Q9UXX9AMTAB_PYRAB2, ., -, ., -, ., -0.39450.80130.8447yesno
Q8MXQ7CDKAL_CAEEL2, ., -, ., -, ., -0.53960.69190.7294yesno
Q6PG34CDKAL_DANRE2, ., -, ., -, ., -0.53690.91510.7495yesno
Q291H5CDKAL_DROPS2, ., -, ., -, ., -0.57820.86160.6980yesno
O66638MIAB_AQUAE2, ., -, ., -, ., -0.31470.83030.8454yesno
Q91WE6CDKAL_MOUSE2, ., -, ., -, ., -0.56600.8750.6782yesno
Q5VV42CDKAL_HUMAN2, ., -, ., -, ., -0.52520.98660.7633yesno
O59545AMTAB_PYRHO2, ., -, ., -, ., -0.3920.81250.8564yesno
B1XS06MIAB_POLNS2, ., -, ., -, ., -0.31260.83700.8370yesno
Q7K4W1CDKAL_DROME2, ., -, ., -, ., -0.57170.86160.6992yesno
A4T007MIAB_POLSQ2, ., -, ., -, ., -0.310.84370.8437yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
TIGR01578420 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying e 1e-144
COG0621437 COG0621, MiaB, 2-methylthioadenine synthetase [Tra 1e-109
TIGR00089429 TIGR00089, TIGR00089, radical SAM methylthiotransf 1e-107
TIGR01579414 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying e 5e-72
PRK14331437 PRK14331, PRK14331, (dimethylallyl)adenosine tRNA 5e-67
PRK14330434 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA 5e-65
TIGR01574438 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl 4e-63
PRK14328439 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA 2e-61
PRK14325444 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA 4e-58
PRK14338459 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA 5e-57
PRK14327509 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA 3e-54
PRK14333448 PRK14333, PRK14333, (dimethylallyl)adenosine tRNA 4e-54
PRK14340445 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA 2e-52
PRK14329467 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA 3e-50
PRK14326502 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA 2e-49
PRK14337446 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA 3e-48
PRK14339420 PRK14339, PRK14339, (dimethylallyl)adenosine tRNA 7e-48
TIGR01125430 TIGR01125, TIGR01125, ribosomal protein S12 methyl 2e-47
PRK14335455 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA 4e-46
PRK14336418 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA 1e-41
PRK14334440 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA 9e-41
smart00729216 smart00729, Elp3, Elongator protein 3, MiaB family 7e-40
PRK14332449 PRK14332, PRK14332, (dimethylallyl)adenosine tRNA 5e-36
pfam0091998 pfam00919, UPF0004, Uncharacterized protein family 5e-27
TIGR04013382 TIGR04013, B12_SAM_MJ_1487, B12-binding domain/rad 5e-19
COG1032490 COG1032, COG1032, Fe-S oxidoreductase [Energy prod 1e-18
pfam04055165 pfam04055, Radical_SAM, Radical SAM superfamily 1e-16
PRK14862440 PRK14862, rimO, ribosomal protein S12 methylthiotr 1e-16
TIGR04014434 TIGR04014, B12_SAM_MJ_0865, B12-binding domain/rad 2e-13
COG0635 416 COG0635, HemN, Coproporphyrinogen III oxidase and 1e-07
cd01335204 cd01335, Radical_SAM, Radical SAM superfamily 3e-05
COG1031560 COG1031, COG1031, Uncharacterized Fe-S oxidoreduct 6e-04
PRK08207488 PRK08207, PRK08207, coproporphyrinogen III oxidase 0.003
TIGR01212302 TIGR01212, TIGR01212, radical SAM protein, TIGR012 0.003
>gnl|CDD|233479 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information 
 Score =  417 bits (1073), Expect = e-144
 Identities = 182/374 (48%), Positives = 253/374 (67%), Gaps = 12/374 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N  DSE M   L+A+G+ L +N+EEAD+ ++NTCTVK+ ++  M   I  
Sbjct: 2   VYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIES 61

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
                K +VVAGC+PQ  ++     G   S++GVQ IDR+VEVVEETLK        R+ 
Sbjct: 62  LMRNGKHVVVAGCMPQAQKESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG--RREA 119

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
              L LPK R+N  +EI+PIN GCLG C+YC TKHARG L SY  E +V + R ++A+G 
Sbjct: 120 GTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGC 179

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+W++S+DTGAYGRDIG  LP LL  ++ E+P  G   LR+GM NP  +LE L E+A V
Sbjct: 180 KEIWITSQDTGAYGRDIGSRLPELLR-LITEIP--GEFRLRVGMMNPKNVLEILDELANV 236

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
            +H  VY FLH+PVQSGSD+VL  M REYT+SDF  +VD   E  P + ++TDII GFP 
Sbjct: 237 YQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPT 296

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV----- 413
           ETD+DF +T+ L+++Y+  +++I++F PRPGTPAA+MK++P+ +VKKRS+ LT +     
Sbjct: 297 ETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVL 356

Query: 414 FEAFTPYLGMEGRV 427
            E     +G    V
Sbjct: 357 LEMRDNLIGTRVHV 370

This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by This model as well as ones falling within the scope of the MiaB equivalog model [Protein synthesis, tRNA and rRNA base modification]. Length = 420
>gnl|CDD|223694 COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232820 TIGR00089, TIGR00089, radical SAM methylthiotransferase, MiaB/RimO family Back     alignment and domain information
>gnl|CDD|233480 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme Back     alignment and domain information
>gnl|CDD|184628 PRK14331, PRK14331, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184627 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|233476 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>gnl|CDD|237675 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237673 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184633 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184624 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237677 PRK14333, PRK14333, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237679 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237676 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237674 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|172813 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184634 PRK14339, PRK14339, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|233279 TIGR01125, TIGR01125, ribosomal protein S12 methylthiotransferase RimO Back     alignment and domain information
>gnl|CDD|237678 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184630 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>gnl|CDD|172808 PRK14332, PRK14332, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|216191 pfam00919, UPF0004, Uncharacterized protein family UPF0004 Back     alignment and domain information
>gnl|CDD|234440 TIGR04013, B12_SAM_MJ_1487, B12-binding domain/radical SAM domain protein, MJ_1487 family Back     alignment and domain information
>gnl|CDD|223963 COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|237838 PRK14862, rimO, ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|234441 TIGR04014, B12_SAM_MJ_0865, B12-binding domain/radical SAM domain protein, MJ_0865 family Back     alignment and domain information
>gnl|CDD|223708 COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|223962 COG1031, COG1031, Uncharacterized Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|236187 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
KOG4355 547 consensus Predicted Fe-S oxidoreductase [General f 100.0
COG0621437 MiaB 2-methylthioadenine synthetase [Translation, 100.0
PRK14340445 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14332449 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14327509 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14335455 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14329467 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14330434 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14333448 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14326502 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14337446 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14331437 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
TIGR01578420 MiaB-like-B MiaB-like tRNA modifying enzyme, archa 100.0
PRK14325444 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14336418 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
TIGR01574438 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 100.0
PRK14328439 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
TIGR01579414 MiaB-like-C MiaB-like tRNA modifying enzyme. This 100.0
TIGR00089429 RNA modification enzyme, MiaB family. This subfami 100.0
PRK14862440 rimO ribosomal protein S12 methylthiotransferase; 100.0
TIGR01125430 MiaB-like tRNA modifying enzyme YliG, TIGR01125. T 100.0
PRK14338459 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14339420 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14334440 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
KOG2492552 consensus CDK5 activator-binding protein [Signal t 100.0
TIGR02026497 BchE magnesium-protoporphyrin IX monomethyl ester 100.0
TIGR03471472 HpnJ hopanoid biosynthesis associated radical SAM 100.0
PRK00955620 hypothetical protein; Provisional 100.0
PRK01254707 hypothetical protein; Provisional 100.0
PRK05481289 lipoyl synthase; Provisional 100.0
COG1032490 Fe-S oxidoreductase [Energy production and convers 99.96
PRK07094323 biotin synthase; Provisional 99.95
PF0091998 UPF0004: Uncharacterized protein family UPF0004; I 99.94
PRK05904353 coproporphyrinogen III oxidase; Provisional 99.94
TIGR00510302 lipA lipoate synthase. The family shows strong seq 99.94
PRK12928290 lipoyl synthase; Provisional 99.93
PRK08599 377 coproporphyrinogen III oxidase; Provisional 99.93
PRK05628 375 coproporphyrinogen III oxidase; Validated 99.93
PRK09058 449 coproporphyrinogen III oxidase; Provisional 99.92
TIGR01212302 radical SAM protein, TIGR01212 family. This unchar 99.92
PRK05799 374 coproporphyrinogen III oxidase; Provisional 99.92
PRK08446350 coproporphyrinogen III oxidase; Provisional 99.92
PRK07379 400 coproporphyrinogen III oxidase; Provisional 99.92
COG1031560 Uncharacterized Fe-S oxidoreductase [Energy produc 99.92
PRK08207488 coproporphyrinogen III oxidase; Provisional 99.91
PRK09057 380 coproporphyrinogen III oxidase; Provisional 99.91
TIGR00539 360 hemN_rel putative oxygen-independent coproporphyri 99.91
PRK08898 394 coproporphyrinogen III oxidase; Provisional 99.91
PRK06256336 biotin synthase; Validated 99.9
PRK08208 430 coproporphyrinogen III oxidase; Validated 99.9
TIGR01210313 conserved hypothetical protein TIGR01210. This fam 99.9
PRK06582 390 coproporphyrinogen III oxidase; Provisional 99.9
PRK05660 378 HemN family oxidoreductase; Provisional 99.89
PRK06294 370 coproporphyrinogen III oxidase; Provisional 99.89
TIGR00433296 bioB biotin synthetase. Catalyzes the last step of 99.89
PRK06245336 cofG FO synthase subunit 1; Reviewed 99.88
PLN02428349 lipoic acid synthase 99.88
PRK08629 433 coproporphyrinogen III oxidase; Provisional 99.88
smart00729216 Elp3 Elongator protein 3, MiaB family, Radical SAM 99.87
TIGR00538 455 hemN oxygen-independent coproporphyrinogen III oxi 99.87
PRK13347 453 coproporphyrinogen III oxidase; Provisional 99.86
PRK09249 453 coproporphyrinogen III oxidase; Provisional 99.86
TIGR00423309 radical SAM domain protein, CofH subfamily. This p 99.85
TIGR03550322 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.85
PRK06267350 hypothetical protein; Provisional 99.84
COG0635 416 HemN Coproporphyrinogen III oxidase and related Fe 99.84
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.83
COG1242312 Predicted Fe-S oxidoreductase [General function pr 99.83
TIGR01211 522 ELP3 histone acetyltransferase, ELP3 family. The S 99.83
TIGR03700351 mena_SCO4494 putative menaquinone biosynthesis pro 99.81
TIGR03699340 mena_SCO4550 menaquinone biosynthesis protein, SCO 99.81
PRK08445348 hypothetical protein; Provisional 99.81
PRK08508279 biotin synthase; Provisional 99.8
cd01335204 Radical_SAM Radical SAM superfamily. Enzymes of th 99.8
PLN02389379 biotin synthase 99.8
PF04055166 Radical_SAM: Radical SAM superfamily; InterPro: IP 99.77
PRK09240371 thiH thiamine biosynthesis protein ThiH; Reviewed 99.74
PRK15108345 biotin synthase; Provisional 99.72
COG0502335 BioB Biotin synthase and related enzymes [Coenzyme 99.71
TIGR02351366 thiH thiazole biosynthesis protein ThiH. Members t 99.68
PRK07360371 FO synthase subunit 2; Reviewed 99.66
PRK08444353 hypothetical protein; Provisional 99.66
COG1243 515 ELP3 Histone acetyltransferase [Transcription / Ch 99.65
PRK05926370 hypothetical protein; Provisional 99.64
PRK00164331 moaA molybdenum cofactor biosynthesis protein A; R 99.62
PRK09613 469 thiH thiamine biosynthesis protein ThiH; Reviewed 99.61
PRK05927350 hypothetical protein; Provisional 99.59
PRK13361329 molybdenum cofactor biosynthesis protein A; Provis 99.58
TIGR02666334 moaA molybdenum cofactor biosynthesis protein A, b 99.54
PTZ00413398 lipoate synthase; Provisional 99.53
PRK09234843 fbiC FO synthase; Reviewed 99.53
TIGR02668302 moaA_archaeal probable molybdenum cofactor biosynt 99.53
TIGR03822321 AblA_like_2 lysine-2,3-aminomutase-related protein 99.51
PLN02951373 Molybderin biosynthesis protein CNX2 99.47
PRK09234 843 fbiC FO synthase; Reviewed 99.46
PRK14463349 ribosomal RNA large subunit methyltransferase N; P 99.38
TIGR02493235 PFLA pyruvate formate-lyase 1-activating enzyme. A 99.38
PRK14455356 ribosomal RNA large subunit methyltransferase N; P 99.35
PRK14466345 ribosomal RNA large subunit methyltransferase N; P 99.34
PRK05301 378 pyrroloquinoline quinone biosynthesis protein PqqE 99.31
TIGR02109 358 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. 99.28
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 99.27
TIGR01290 442 nifB nitrogenase cofactor biosynthesis protein Nif 99.24
COG0320306 LipA Lipoate synthase [Coenzyme metabolism] 99.24
PRK14456368 ribosomal RNA large subunit methyltransferase N; P 99.22
TIGR00238331 KamA family protein. Note that the E. coli homolog 99.21
COG1244358 Predicted Fe-S oxidoreductase [General function pr 99.2
COG2896322 MoaA Molybdenum cofactor biosynthesis enzyme [Coen 99.2
COG1856275 Uncharacterized homolog of biotin synthetase [Func 99.19
TIGR02495191 NrdG2 anaerobic ribonucleoside-triphosphate reduct 99.19
PRK11145246 pflA pyruvate formate lyase-activating enzyme 1; P 99.17
PRK14470336 ribosomal RNA large subunit methyltransferase N; P 99.17
PRK14467348 ribosomal RNA large subunit methyltransferase N; P 99.17
PRK14457345 ribosomal RNA large subunit methyltransferase N; P 99.16
PRK14459373 ribosomal RNA large subunit methyltransferase N; P 99.15
PRK14453347 chloramphenicol/florfenicol resistance protein; Pr 99.15
TIGR03470318 HpnH hopanoid biosynthesis associated radical SAM 99.15
PRK11194372 ribosomal RNA large subunit methyltransferase N; P 99.14
PRK14460354 ribosomal RNA large subunit methyltransferase N; P 99.14
PRK14461371 ribosomal RNA large subunit methyltransferase N; P 99.12
PRK14468343 ribosomal RNA large subunit methyltransferase N; P 99.1
TIGR00048355 radical SAM enzyme, Cfr family. A Staphylococcus s 99.1
PRK14469343 ribosomal RNA large subunit methyltransferase N; P 99.08
PRK14464344 ribosomal RNA large subunit methyltransferase N; P 99.07
PRK14465342 ribosomal RNA large subunit methyltransferase N; P 99.05
PRK14462356 ribosomal RNA large subunit methyltransferase N; P 99.02
COG2516339 Biotin synthase-related enzyme [General function p 99.01
PRK14454342 ribosomal RNA large subunit methyltransferase N; P 98.97
TIGR03821321 AblA_like_1 lysine-2,3-aminomutase-related protein 98.97
KOG2672360 consensus Lipoate synthase [Coenzyme transport and 98.92
PRK13762322 tRNA-modifying enzyme; Provisional 98.92
COG2100414 Predicted Fe-S oxidoreductase [General function pr 98.92
COG0820349 Predicted Fe-S-cluster redox enzyme [General funct 98.89
TIGR03820417 lys_2_3_AblA lysine-2,3-aminomutase. This model de 98.87
COG0731296 Fe-S oxidoreductases [Energy production and conver 98.86
KOG2900380 consensus Biotin synthase [Coenzyme transport and 98.8
COG4277404 Predicted DNA-binding protein with the Helix-hairp 98.66
TIGR03278 404 methan_mark_10 putative methanogenesis marker prot 98.54
COG0535347 Predicted Fe-S oxidoreductases [General function p 98.52
COG1533297 SplB DNA repair photolyase [DNA replication, recom 98.51
PRK13745 412 anaerobic sulfatase-maturase; Provisional 98.43
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 98.35
TIGR03365238 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn 98.28
PRK13758 370 anaerobic sulfatase-maturase; Provisional 98.28
COG1509369 KamA Lysine 2,3-aminomutase [Amino acid transport 98.24
COG0641 378 AslB Arylsulfatase regulator (Fe-S oxidoreductase) 98.23
COG1180260 PflA Pyruvate-formate lyase-activating enzyme [Pos 98.18
cd02068127 radical_SAM_B12_BD B12 binding domain_like associa 98.01
KOG2535 554 consensus RNA polymerase II elongator complex, sub 97.98
COG1625 414 Fe-S oxidoreductase, related to NifB/MoaA family [ 97.96
COG1313335 PflX Uncharacterized Fe-S protein PflX, homolog of 97.65
PF02310121 B12-binding: B12 binding domain; InterPro: IPR0061 97.61
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 97.37
TIGR03279 433 cyano_FeS_chp putative FeS-containing Cyanobacteri 97.33
PRK10076213 pyruvate formate lyase II activase; Provisional 97.3
COG0602212 NrdG Organic radical activating enzymes [Posttrans 97.15
TIGR02826147 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph 97.01
PF13353139 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 96.96
COG5014228 Predicted Fe-S oxidoreductase [General function pr 96.93
cd02067119 B12-binding B12 binding domain (B12-BD). This doma 96.74
cd02065125 B12-binding_like B12 binding domain (B12-BD). Most 96.73
PRK02261137 methylaspartate mutase subunit S; Provisional 96.69
PF13394119 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 96.59
COG2108353 Uncharacterized conserved protein related to pyruv 96.41
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 96.38
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 96.06
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 96.02
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 96.01
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 95.58
TIGR02491154 NrdG anaerobic ribonucleoside-triphosphate reducta 95.43
PRK11121154 nrdG anaerobic ribonucleotide reductase-activating 94.97
PRK09426714 methylmalonyl-CoA mutase; Reviewed 94.43
PLN02746347 hydroxymethylglutaryl-CoA lyase 94.22
KOG2876323 consensus Molybdenum cofactor biosynthesis pathway 93.84
KOG2492552 consensus CDK5 activator-binding protein [Signal t 93.81
cd02070201 corrinoid_protein_B12-BD B12 binding domain of cor 93.3
PRK14818173 NADH dehydrogenase subunit B; Provisional 92.85
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 92.72
PRK14816182 NADH dehydrogenase subunit B; Provisional 92.55
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 92.48
cd07938274 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, 92.45
TIGR01957145 nuoB_fam NADH-quinone oxidoreductase, B subunit. T 91.76
TIGR02370197 pyl_corrinoid methyltransferase cognate corrinoid 91.41
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 91.31
PRK14813189 NADH dehydrogenase subunit B; Provisional 90.84
PRK11858 378 aksA trans-homoaconitate synthase; Reviewed 89.64
PF0193861 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (a 89.61
PF04016147 DUF364: Domain of unknown function (DUF364); Inter 89.37
cd02069213 methionine_synthase_B12_BD B12 binding domain of m 89.21
PRK06411183 NADH dehydrogenase subunit B; Validated 88.88
PRK14819264 NADH dehydrogenase subunit B; Provisional 88.52
cd07944266 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- 87.73
cd07940268 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- 87.52
PRK14815183 NADH dehydrogenase subunit B; Provisional 87.36
TIGR02660 365 nifV_homocitr homocitrate synthase NifV. This fami 87.22
CHL00023225 ndhK NADH dehydrogenase subunit K 87.03
PF00682237 HMGL-like: HMGL-like of this family is not conserv 86.81
TIGR02090 363 LEU1_arch isopropylmalate/citramalate/homocitrate 86.55
PF08821107 CGGC: CGGC domain; InterPro: IPR014925 Proteins in 84.93
TIGR03217 333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 84.93
PRK00915 513 2-isopropylmalate synthase; Validated 84.9
COG3260148 Ni,Fe-hydrogenase III small subunit [Energy produc 84.84
PRK14041 467 oxaloacetate decarboxylase; Provisional 84.81
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 84.06
PRK14814186 NADH dehydrogenase subunit B; Provisional 83.17
PRK08195 337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 82.28
PRK07535261 methyltetrahydrofolate:corrinoid/iron-sulfur prote 81.56
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 81.37
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 80.55
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-96  Score=699.33  Aligned_cols=441  Identities=65%  Similarity=1.066  Sum_probs=418.1

Q ss_pred             CCchhhhhhcCCCCCCCCCCCCCCCccccccccCCCCCCccCCcccccCCCCCCCCCCceEEEEecCCccChhHHHHHHH
Q 013195            1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAG   80 (448)
Q Consensus         1 ~~~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GC~~N~~dse~~~~   80 (448)
                      |||||||+++   +|++|++|++. ++.|+||.||+...+-....++..+.+|.|||++++||+||||++|++|||||++
T Consensus         1 ~ddiedl~s~---~d~kp~~r~~~-~k~v~pk~~kr~~~k~~q~ee~~~ps~s~ipgtqki~iktwgcshnnsdseymag   76 (547)
T KOG4355|consen    1 MDDIEDLLSG---GDAKPGFRLPL-NKVVNPKTNKRISSKPDQIEESNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMAG   76 (547)
T ss_pred             CccHHHHhhC---CCCCCcccccc-ccccccccccccccCchhhhhcCCCccccCCCccEEEEEeecccCCCchhHHHhh
Confidence            7999999955   59999999994 4459999988654332223334446789999999999999999999999999999


Q ss_pred             HHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhhhcCCccEEEcCCchhHHHH
Q 013195           81 QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVE  160 (448)
Q Consensus        81 ~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvg~~~~~~i~~  160 (448)
                      +|++.||.++. +++||+|++|||||.++++..+++.|.+.++.++++|++||.||..|++..+.+.+|+|.++++++++
T Consensus        77 qlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvve  155 (547)
T KOG4355|consen   77 QLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVVE  155 (547)
T ss_pred             hHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHHH
Confidence            99999999998 89999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcE
Q 013195          161 VVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE  240 (448)
Q Consensus       161 ~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~e  240 (448)
                      ++++.++|+.++++.....+.+++|+.|++++..+|.|+.||.+.|+||..+++||..-|++++++++.++...+.|+.+
T Consensus       156 vveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~e  235 (547)
T KOG4355|consen  156 VVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCE  235 (547)
T ss_pred             HHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEE
Confidence            99999999999999887788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHH
Q 013195          241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL  320 (448)
Q Consensus       241 i~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vL  320 (448)
                      ||+++.|+++||+|.+.+++.||+++.+.+|  ..+.+|+++++|..+.+++++++..+++++++.++|+|+|||||.+|
T Consensus       236 IwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl  313 (547)
T KOG4355|consen  236 IWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVL  313 (547)
T ss_pred             EEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHH
Confidence            9999999999999999999999999999998  78999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCH
Q 013195          321 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS  400 (448)
Q Consensus       321 k~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~  400 (448)
                      -.|+|.|...++..+++.+++.+|||.|.||+|+||||||++||++|++++++++|..+++++|+|+||||+++|+++|.
T Consensus       314 ~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~a  393 (547)
T KOG4355|consen  314 TEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIPA  393 (547)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchhhcCCCcEEEEEEEEEecCCceEEEeeCC
Q 013195          401 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF  448 (448)
Q Consensus       401 ~~~~~R~~~l~~~~~~~~~~~~~~g~~~~vlve~~~~~~~~~~g~~~~  448 (448)
                      .++++|.+.|.+++.++..|...+|+...|||++++.|+.+++|||++
T Consensus       394 ~~vkkRTk~ls~lF~sy~pYtd~ige~~rVlVTEva~Dklh~VgHnks  441 (547)
T KOG4355|consen  394 VEVKKRTKALSELFRSYTPYTDEIGELHRVLVTEVAADKLHYVGHNKS  441 (547)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccccccEEEEEEEEeeccceeeeccccc
Confidence            999999999999999999999999999999999999998899999975

>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme Back     alignment and domain information
>TIGR00089 RNA modification enzyme, MiaB family Back     alignment and domain information
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 Back     alignment and domain information
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase Back     alignment and domain information
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ Back     alignment and domain information
>PRK00955 hypothetical protein; Provisional Back     alignment and domain information
>PRK01254 hypothetical protein; Provisional Back     alignment and domain information
>PRK05481 lipoyl synthase; Provisional Back     alignment and domain information
>COG1032 Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK07094 biotin synthase; Provisional Back     alignment and domain information
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA Back     alignment and domain information
>PRK05904 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00510 lipA lipoate synthase Back     alignment and domain information
>PRK12928 lipoyl synthase; Provisional Back     alignment and domain information
>PRK08599 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05628 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PRK09058 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR01212 radical SAM protein, TIGR01212 family Back     alignment and domain information
>PRK05799 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08446 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK07379 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK08207 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK09057 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK08898 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK06256 biotin synthase; Validated Back     alignment and domain information
>PRK08208 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>TIGR01210 conserved hypothetical protein TIGR01210 Back     alignment and domain information
>PRK06582 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05660 HemN family oxidoreductase; Provisional Back     alignment and domain information
>PRK06294 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00433 bioB biotin synthetase Back     alignment and domain information
>PRK06245 cofG FO synthase subunit 1; Reviewed Back     alignment and domain information
>PLN02428 lipoic acid synthase Back     alignment and domain information
>PRK08629 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK13347 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK09249 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Back     alignment and domain information
>PRK06267 hypothetical protein; Provisional Back     alignment and domain information
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>cd01335 Radical_SAM Radical SAM superfamily Back     alignment and domain information
>PLN02389 biotin synthase Back     alignment and domain information
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation Back     alignment and domain information
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PRK15108 biotin synthase; Provisional Back     alignment and domain information
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>PRK05926 hypothetical protein; Provisional Back     alignment and domain information
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional Back     alignment and domain information
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial Back     alignment and domain information
>PTZ00413 lipoate synthase; Provisional Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal Back     alignment and domain information
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>PLN02951 Molybderin biosynthesis protein CNX2 Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme Back     alignment and domain information
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional Back     alignment and domain information
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB Back     alignment and domain information
>COG0320 LipA Lipoate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00238 KamA family protein Back     alignment and domain information
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] Back     alignment and domain information
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional Back     alignment and domain information
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH Back     alignment and domain information
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00048 radical SAM enzyme, Cfr family Back     alignment and domain information
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>COG2516 Biotin synthase-related enzyme [General function prediction only] Back     alignment and domain information
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK13762 tRNA-modifying enzyme; Provisional Back     alignment and domain information
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase Back     alignment and domain information
>COG0731 Fe-S oxidoreductases [Energy production and conversion] Back     alignment and domain information
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] Back     alignment and domain information
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 Back     alignment and domain information
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13745 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Back     alignment and domain information
>PRK13758 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] Back     alignment and domain information
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain Back     alignment and domain information
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] Back     alignment and domain information
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] Back     alignment and domain information
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase Back     alignment and domain information
>PRK10076 pyruvate formate lyase II activase; Provisional Back     alignment and domain information
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A Back     alignment and domain information
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>cd02067 B12-binding B12 binding domain (B12-BD) Back     alignment and domain information
>cd02065 B12-binding_like B12 binding domain (B12-BD) Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A Back     alignment and domain information
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional Back     alignment and domain information
>PRK09426 methylmalonyl-CoA mutase; Reviewed Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins Back     alignment and domain information
>PRK14818 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>PRK14816 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain Back     alignment and domain information
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit Back     alignment and domain information
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK14813 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>PRK11858 aksA trans-homoaconitate synthase; Reviewed Back     alignment and domain information
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain Back     alignment and domain information
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function Back     alignment and domain information
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase Back     alignment and domain information
>PRK06411 NADH dehydrogenase subunit B; Validated Back     alignment and domain information
>PRK14819 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK14815 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>CHL00023 ndhK NADH dehydrogenase subunit K Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>PRK00915 2-isopropylmalate synthase; Validated Back     alignment and domain information
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion] Back     alignment and domain information
>PRK14041 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>PRK14814 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
2qgq_A304 Crystal Structure Of Tm_1862 From Thermotoga Mariti 5e-24
3cix_A348 X-ray Structure Of The [fefe]-hydrogenase Maturase 1e-06
3ciw_A348 X-Ray Structure Of The [fefe]-Hydrogenase Maturase 6e-06
3iiz_A348 X-Ray Structure Of The Fefe-Hydrogenase Maturase Hy 6e-06
>pdb|2QGQ|A Chain A, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 126/268 (47%), Gaps = 24/268 (8%)
Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
           + I+ GC   CT+C     +G L S ++E +   V  ++ +G KE+ L ++DT +YG D+
Sbjct: 8   VKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDL 67
Query: 256 --GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
                LP LL  + +    +G   +R+   +P  + E +  I+  L    V  +  VPVQ
Sbjct: 68  YRKQALPDLLRRLNS---LNGEFWIRVXYLHPDHLTEEI--ISAXLELDKVVKYFDVPVQ 122
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
            GSD +L    R  +  + +  + ++ E  P   + T II GFPGET+EDF +    ++E
Sbjct: 123 HGSDKILKLXGRTKSSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEE 182
Query: 374 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL--------TSVFEAFT----PY 420
            +F ++    +    GT A  +K KV     K+R  EL         S  + F      +
Sbjct: 183 IQFDKLGAFVYSDEEGTVAFNLKEKVDPEXAKRRQEELLLLQAEISNSRLDRFVGKKLKF 242
Query: 421 L--GMEGR--VERIWITEIAADGIHLVR 444
           L  G EG+  V R W      DG+  VR
Sbjct: 243 LVEGKEGKFLVGRTWTEAPEVDGVVFVR 270
>pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde From Thermotoga Maritima In Complex With Thiocyanate Length = 348 Back     alignment and structure
>pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima Length = 348 Back     alignment and structure
>pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From T. Maritima In Complex With S-Adenosyl-L-Methionine Length = 348 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
2qgq_A304 Protein TM_1862; alpha-beta protein, structural ge 2e-42
1olt_A 457 Oxygen-independent coproporphyrinogen III oxidase; 5e-07
3iix_A348 Biotin synthetase, putative; adoMet radical, SAM r 1e-05
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Length = 304 Back     alignment and structure
 Score =  150 bits (382), Expect = 2e-42
 Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 10/217 (4%)

Query: 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VN 258
           GC   CT+C     +G L S ++E +   V  ++ +G KE+ L ++DT +YG D+     
Sbjct: 13  GCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQA 72

Query: 259 LPILLNAIVAELPPDGSTMLRIGMTNP-PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
           LP LL  + +    +G   +R+   +P     E +  + E      V  +  VPVQ GSD
Sbjct: 73  LPDLLRRLNSL---NGEFWIRVMYLHPDHLTEEIISAMLE---LDKVVKYFDVPVQHGSD 126

Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
            +L  M R  +  + + ++ ++ E  P   + T II GFPGET+EDF +    ++E +F 
Sbjct: 127 KILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFD 186

Query: 378 QVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 413
           ++    +    GT A  +K KV   + K+R  EL  +
Sbjct: 187 KLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLL 223
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Length = 457 Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
2qgq_A304 Protein TM_1862; alpha-beta protein, structural ge 100.0
1olt_A 457 Oxygen-independent coproporphyrinogen III oxidase; 99.93
3t7v_A350 Methylornithine synthase PYLB; TIM-barrel fold, mu 99.91
3iix_A348 Biotin synthetase, putative; adoMet radical, SAM r 99.9
1r30_A369 Biotin synthase; SAM radical protein, TIM barrel, 99.87
1tv8_A340 MOAA, molybdenum cofactor biosynthesis protein A; 99.74
3c8f_A245 Pyruvate formate-lyase 1-activating enzyme; adoMet 99.62
2yx0_A342 Radical SAM enzyme; predicted tRNA modification en 99.6
2z2u_A311 UPF0026 protein MJ0257; metal binding protein; 2.4 99.41
2a5h_A416 L-lysine 2,3-aminomutase; radical SAM, four-iron-f 99.32
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 99.2
4fhd_A368 Spore photoproduct lyase; partial TIM-barrel, DNA 97.9
3can_A182 Pyruvate-formate lyase-activating enzyme; structur 97.26
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 97.24
1ccw_A137 Protein (glutamate mutase); coenzyme B12, radical 95.81
1req_A727 Methylmalonyl-COA mutase; isomerase, intramolecula 95.12
2xij_A762 Methylmalonyl-COA mutase, mitochondrial; isomerase 94.86
1y80_A210 Predicted cobalamin binding protein; corrinoid, fa 93.94
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 93.65
2i2x_B258 MTAC, methyltransferase 1; TIM barrel and helix bu 93.17
1xrs_B262 D-lysine 5,6-aminomutase beta subunit; TIM barrel, 93.07
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 92.47
3kp1_A763 D-ornithine aminomutase E component; 5 aminomutase 90.27
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 89.92
1req_B637 Methylmalonyl-COA mutase; isomerase, intramolecula 89.48
3ezx_A215 MMCP 1, monomethylamine corrinoid protein 1; N ter 89.42
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 87.1
3ewb_X293 2-isopropylmalate synthase; LEUA, structural genom 85.77
3bul_A579 Methionine synthase; transferase, reactivation con 85.43
1eiw_A111 Hypothetical protein MTH538; CHEY-like fold, flavo 84.38
1nvm_A 345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 82.43
3ble_A337 Citramalate synthase from leptospira interrogans; 81.26
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Back     alignment and structure
Probab=100.00  E-value=7.7e-47  Score=371.97  Aligned_cols=251  Identities=29%  Similarity=0.487  Sum_probs=204.8

Q ss_pred             CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--CCCHHHHHHHHHH
Q 013195          191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA  268 (448)
Q Consensus       191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~~~l~~ll~~l~~  268 (448)
                      +..++|++++||+++|+||.++..+|+.|++++++|++|++.+.+.|+++|+|+|+|++.||.+.  ...+.+|++.+.+
T Consensus         3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~   82 (304)
T 2qgq_A            3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS   82 (304)
T ss_dssp             CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred             CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999999998642  3579999999976


Q ss_pred             hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 013195          269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI  348 (448)
Q Consensus       269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i  348 (448)
                       .+  +..|+++.+++|..+++++  +..+.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+
T Consensus        83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i  157 (304)
T 2qgq_A           83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVL  157 (304)
T ss_dssp             -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEE
T ss_pred             -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence             33  5668999888998887765  555556666689999999999999999999999999999999999998889999


Q ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCC
Q 013195          349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEG  425 (448)
Q Consensus       349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g  425 (448)
                      .++||+||||||+++|++|++++++++++.+++++|+|+||||+++++ ++|++++++|+++|+++++.  .+++++++|
T Consensus       158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g  237 (304)
T 2qgq_A          158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVG  237 (304)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999998 99999999999999999984  578899999


Q ss_pred             cEEEEEEEEEecCCceEEEeeCC
Q 013195          426 RVERIWITEIAADGIHLVRLEQF  448 (448)
Q Consensus       426 ~~~~vlve~~~~~~~~~~g~~~~  448 (448)
                      ++++||||+.  ++..+.|||..
T Consensus       238 ~~~~vl~e~~--~~~~~~g~~~~  258 (304)
T 2qgq_A          238 KKLKFLVEGK--EGKFLVGRTWT  258 (304)
T ss_dssp             CEEEEEEEEE--ETTEEEEEETT
T ss_pred             CEEEEEEEec--CCCEEEEECCC
Confidence            9999999996  23368899863
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Back     alignment and structure
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Back     alignment and structure
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Back     alignment and structure
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Back     alignment and structure
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Back     alignment and structure
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Back     alignment and structure
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Back     alignment and structure
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Back     alignment and structure
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* Back     alignment and structure
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Back     alignment and structure
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Back     alignment and structure
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Back     alignment and structure
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica} Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} Back     alignment and structure
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B* Back     alignment and structure
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A* Back     alignment and structure
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
d1olta_ 441 Oxygen-independent coproporphyrinogen III oxidase 99.89
d1r30a_312 Biotin synthase {Escherichia coli [TaxId: 562]} 99.84
d1tv8a_327 Molybdenum cofactor biosynthesis protein A MoaA {S 98.81
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 97.26
d7reqb2163 Methylmalonyl-CoA mutase beta subunit, C-terminal 96.3
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 95.63
d1xrsb1160 D-lysine 5,6-aminomutase beta subunit KamE, C-term 95.34
d3bula2156 Methionine synthase, C-terminal domain {Escherichi 93.79
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.9e-23  Score=208.82  Aligned_cols=204  Identities=16%  Similarity=0.218  Sum_probs=156.7

Q ss_pred             CCCCccceeeCccCCC---ccccCHHHHHHHHHHHHHC----CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 013195          202 CLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG  274 (448)
Q Consensus       202 C~~~CsFC~~~~~rg~---~rsr~~e~Iv~ei~~l~~~----G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~  274 (448)
                      |++.|+||..+...++   ...+-++.+++||+.....    .+..|.|.|.+.+....   ..+..|++.+.+.+....
T Consensus        59 C~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~~---~~l~~ll~~l~~~~~~~~  135 (441)
T d1olta_          59 CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLMKLLRENFQFNA  135 (441)
T ss_dssp             ESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHHHHHHHHSCEEE
T ss_pred             CCCCCCCCcCeeecCCCcchHHHHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCCCH---HHHHHHHHHHhhhccccc
Confidence            9999999976543222   2223378899999875542    35678887765544432   357888888887765333


Q ss_pred             cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEE
Q 013195          275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIATDII  353 (448)
Q Consensus       275 ~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-~i~~~~I  353 (448)
                      ...+.++ ++|..++...  +..+.+ .+ ++++++|+||+++++|+.|+|.++.+++.++++.+++.  |+ .+++|+|
T Consensus       136 ~~e~t~E-~~P~~~~~~~--l~~l~~-~G-~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~--g~~~vn~DLI  208 (441)
T d1olta_         136 DAEISIE-VDPREIELDV--LDHLRA-EG-FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI--GFTSTNIDLI  208 (441)
T ss_dssp             EEEEEEE-ECSSSCCTHH--HHHHHH-TT-CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT--TCCSCEEEEE
T ss_pred             hhccccc-ccccccchHH--HHHHHH-hC-CceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhc--ccceeecccc
Confidence            4567776 7999888654  444444 33 79999999999999999999999999999999999999  87 4999999


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC----C-CCHHHHHHHHHHHHHHHH
Q 013195          354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK----K-VPSAVVKKRSRELTSVFE  415 (448)
Q Consensus       354 vG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~----~-v~~~~~~~R~~~l~~~~~  415 (448)
                      +|+||||.++|.+|++.+.+++++++.+|+|+..|+|......    . .+++.+.+.+....+...
T Consensus       209 ~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~  275 (441)
T d1olta_         209 YGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT  275 (441)
T ss_dssp             ESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHHHHHHhhCCCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999877532    2 345555555555555444
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} Back     information, alignment and structure
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure