Citrus Sinensis ID: 013211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MEKEPLLCYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEANK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccHHHHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcEEEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEccccccHHHHHHHEEEccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccEcHHHHHHHcc
Coil and Loop (DISEMBL)
mekepllcylsprkkptpppplfplpedgeisipmpitpselkdrlifgpvtspkdaspiVDALTLslaspttsassssstsffsrdssslqqsssiqdavllpqqqqssqlqspqswlidpnyafaksnlhrsktaPAMAVINdlkhhdavpkpqfgsqsIVRQAVVLLILYLSLGVTIYwfnrhnftasethpvVDALYFCIVTMCtigygditprtvptKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTikggghkespgsyiidvKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTtvgygdrafksmpgrLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAAdidnngfvskSEYVIYKLKemgkisekDVMQIChkfdrldtgncgkiTLADLMEANK
Flexible Loop (DISEMBL)
mekepllcylsprkkptpppPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSLAspttsassssstSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRtikggghkespgsyiidvkkgRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLaadidnngfvsKSEYVIYKLKEMGKISEKDVMQICHKfdrldtgncgKITLADLMEANK
Low Complexity Region (SEG)
MEKEPLLCYLSprkkptpppplfplpEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDAltlslaspttsassssstsffsrdssslqqsssIQDAVllpqqqqssqlqspqsWLIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKvalalgvvvlcigigvgvMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEANK
Disordered region (IsUnstruct)
**********************************************IF*********************************************************************WLIDPNYAFAKSNL*******AMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLAD******
Disordered Region (DISOPRED)
****PLL***************FPLPEDGEISIPMPI*PSELK*******************************************************************************NYAFAKSNLH*S***************************IVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVA***********FVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME***
Disordered Region (DISEMBL)
MEKEPLLCYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLS****************************SIQDAVLL************QSWLIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEANK
Disordered Region (DISPRO)
****PLLCYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVT***DASP*VDALTL*************************************************************************M***************QFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEAN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKEPLLCYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEANK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q9SVV6	436	Two-pore potassium channe	yes	no	0.948	0.972	0.623	1e-153
Q9FL25	443	Two-pore potassium channe	no	no	0.868	0.875	0.592	1e-133
Q69TN4	456	Two pore potassium channe	yes	no	0.718	0.703	0.634	1e-118
Q9S6Z8	408	Two-pore potassium channe	no	no	0.816	0.894	0.566	1e-114
Q9FWX6	284	Two-pore potassium channe	no	no	0.548	0.862	0.437	9e-55
Q8LBL1	363	Two-pore potassium channe	no	no	0.628	0.774	0.373	3e-52
Q9XFR0	260	Potassium inward rectifie	no	no	0.355	0.611	0.567	1e-48
Q8LIN5	349	Two pore potassium channe	no	no	0.695	0.891	0.349	7e-47
Q850M0	347	Two pore potassium channe	no	no	0.617	0.795	0.358	9e-44
P40310	691	Outward-rectifier potassi	yes	no	0.319	0.206	0.244	1e-08

>sp|Q9SVV6|TPK3_ARATH Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1

 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/444 (62%), Positives = 336/444 (75%), Gaps = 20/444 (4%)

Query: 4   EPLLCYL-SPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVT-SPKDASPIV 61
           +PLL Y+ SPR K  PP  LFPLPED E++IPMP+TPSE K+RLIFGP + SP+D+S  +
Sbjct: 7   DPLLQYMISPRLK-KPPQLLFPLPEDNEVAIPMPMTPSEFKERLIFGPFSCSPRDSSHFI 65

Query: 62  DALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLID 121
           D    S+  P+ S+SS++  + FS  S+                  Q+S      +    
Sbjct: 66  D----SMKQPSPSSSSTAVNNPFSDSSTLDPLLPPPPPQPEPWLSDQTSSHCQGHA---- 117

Query: 122 PNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIY 181
                    LHRSKTAPAMAVINDL H      P   S+S+VRQA  LL++YLSLGV IY
Sbjct: 118 ---------LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVVRQAFALLVVYLSLGVLIY 168

Query: 182 WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILL 241
           W NR ++  ++THPVVD LYFCIVTMCTIGYGDITP +V TK+FSI+FVLVGFGF+DILL
Sbjct: 169 WLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILL 228

Query: 242 TGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIG 301
           +GMVSYVLDLQE+Y+L + K     E   SYIIDVKKGRMRIR+KVALALGVVVLCI +G
Sbjct: 229 SGMVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVG 288

Query: 302 VGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYL 361
           VG+MHF+E++GWLDSFYLSVMSVTTVGYGDRAFK++PGRLFA+IWLLVSTLAVARAFLYL
Sbjct: 289 VGIMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYL 348

Query: 362 AEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQ 421
           AEARVDKR+R+ AK VL + M+V++F AADIDNNG VSK+EYVIYKLKEM KI++KD++ 
Sbjct: 349 AEARVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILP 408

Query: 422 ICHKFDRLDTGNCGKITLADLMEA 445
           I  +FD+LD  + GKITL DL+E 
Sbjct: 409 ISKQFDKLDRCSNGKITLLDLLEG 432

Probable voltage-independent potassium-selective tonoplast ion channel.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL25|TPK2_ARATH Two-pore potassium channel 2 OS=Arabidopsis thaliana GN=TPK2 PE=2 SV=1

 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/429 (59%), Positives = 318/429 (74%), Gaps = 41/429 (9%)

Query: 27  EDGEISIPMPITPSELKDRLIFGP-VTSPKDASPIVDALTLSLASPTTSASSSSSTSFFS 85
           E+ +++IPMPITP ELK+RLIFG  V S K++S  +DAL+    +P+TS+S+++S S  +
Sbjct: 35  ENNDVTIPMPITPLELKNRLIFGSFVRSRKESSLPIDALS---QNPSTSSSATTSFSDST 91

Query: 86  RDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLIDPNYAFAKS----NLHRSKTAPAMA 141
                          +LLP              L +PN    KS    N HRSKTAPAMA
Sbjct: 92  --------------DLLLP--------------LTEPNKPVRKSKPTINFHRSKTAPAMA 123

Query: 142 VINDLKH-HDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDAL 200
            IN++ H +D     Q  S++IV QAV LL++YLSLGV IYW NR ++   +THPVVDAL
Sbjct: 124 AINNISHPNDPKTDQQSDSKTIVNQAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDAL 183

Query: 201 YFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTI 260
           YFCIVTMCTIGYGDITP +V TK+FSI FVLVGFGF+DILL+GMV+YVLDLQENY+L T 
Sbjct: 184 YFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQENYMLETA 243

Query: 261 KGG----GHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDS 316
           +        ++   SYIIDVKKGRMRIR+KV LALGVVVLC+G GV +MHFVEK+GWLDS
Sbjct: 244 RNESLNLNDRDKVRSYIIDVKKGRMRIRLKVGLALGVVVLCLGFGVLIMHFVEKIGWLDS 303

Query: 317 FYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKW 376
           FY SVMSVTTVGYGDRAF ++ GRL A++WLLVSTLAVARA L+LAE+RVDKR+R+ AK 
Sbjct: 304 FYFSVMSVTTVGYGDRAFNTLAGRLLAAMWLLVSTLAVARAILFLAESRVDKRNRERAKK 363

Query: 377 VLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGK 436
           VLG+ M++++FL ADID NG VSK+E+VIYKLK+M KI+EKD+  I  +FD+LD  N G+
Sbjct: 364 VLGESMSISQFLDADIDCNGCVSKAEFVIYKLKKMDKITEKDINPIGFQFDKLDRTNSGR 423

Query: 437 ITLADLMEA 445
           ITL DL+E+
Sbjct: 424 ITLLDLLES 432

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69TN4|KCO3_ORYSJ Two pore potassium channel c OS=Oryza sativa subsp. japonica GN=TPKC PE=3 SV=1

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 257/331 (77%), Gaps = 10/331 (3%)

Query: 127 AKSNLHRSKTAPAMAVINDLKHHDAVPKPQ-------FGSQSIVRQAVVLLILYLSLGVT 179
            ++NLHRS+TAPAMA +N      A                +IV  A + L+ YL++GVT
Sbjct: 112 GRTNLHRSRTAPAMAPLNAAAIAAAAASGDSRNPPPPPRRPAIVLHAFLFLLAYLAMGVT 171

Query: 180 IYWFNRHNFTASE--THPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
            Y     NFT+S   THPV DALYFCIVT+CTIGYGDITP T   K+FSI FVL+GFGFV
Sbjct: 172 FYAALPGNFTSSAGPTHPVADALYFCIVTLCTIGYGDITPATPAAKLFSISFVLIGFGFV 231

Query: 238 DILLTGMVSYVLDLQENYLLRTIKG-GGHKESPGSYIIDVKKGRMRIRMKVALALGVVVL 296
           DILL+GMVSYVLDLQE+ L+  +K     ++   +YI D+KKGRMR+RMKVALAL VV +
Sbjct: 232 DILLSGMVSYVLDLQEHLLITALKNPRSVRKHRHNYIFDLKKGRMRVRMKVALALTVVAI 291

Query: 297 CIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVAR 356
           C+G+G  V+  VE LGWLD+ YL+VMSVTTVGYGD AF+++ GRLFAS WLLVSTLAVAR
Sbjct: 292 CVGVGAAVLKRVENLGWLDAVYLAVMSVTTVGYGDHAFRTLAGRLFASAWLLVSTLAVAR 351

Query: 357 AFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
           AFLYLAE R+DKRHR MA WVL +DMTV+EFLAADIDNNG+V+KSE+V+YKLKEMGKISE
Sbjct: 352 AFLYLAEMRIDKRHRAMANWVLSRDMTVSEFLAADIDNNGYVTKSEFVVYKLKEMGKISE 411

Query: 417 KDVMQICHKFDRLDTGNCGKITLADLMEANK 447
           KD+M IC +F R+D+GNCGKITL+DL+E+++
Sbjct: 412 KDIMMICDQFQRMDSGNCGKITLSDLLESHQ 442

Inward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S6Z8|TPK5_ARATH Two-pore potassium channel 5 OS=Arabidopsis thaliana GN=TPK5 PE=1 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/381 (56%), Positives = 275/381 (72%), Gaps = 16/381 (4%)

Query: 73  TSASSSSSTSFFSRDSSS--LQQSSSIQDAVLLPQQQQSSQLQSPQSWLIDPNYAFAKSN 130
           T   S S+TSFF   S    L     ++ +V   ++ Q S       +L           
Sbjct: 30  TIPRSISNTSFFHEISQERLLLHHQDLEQSVQDDKEDQDSDSDETNRFLSQTR------P 83

Query: 131 LHRSKTAPAMAVINDLKHHD-AVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFT 189
           LHRS+TAPAM +I DL+       KP   S+SI+RQA+ LLI+YL+LGV+IY FNR +++
Sbjct: 84  LHRSRTAPAMVIIKDLRTKPPETKKPSPVSKSIIRQAIFLLIVYLTLGVSIYSFNRDHYS 143

Query: 190 ASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVL 249
             ETHPVVDALYFCIVTMCTIGYGDI P T  TK+F+++FVL GFGF+DILL+G+V+YVL
Sbjct: 144 GIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVL 203

Query: 250 DLQENYLLRTIKG-------GGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGV 302
           DLQE+ +L  I+          H+ S   YIID +KGRMRIRMKV LAL VVVLCIG+G 
Sbjct: 204 DLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIRMKVCLALCVVVLCIGVGA 263

Query: 303 GVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLA 362
            V+HFVE+LG++DS YLSVMSVTTVGYGDRAFK++ GRLFA++WLLVSTLAVARAFLYLA
Sbjct: 264 LVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQGRLFAAVWLLVSTLAVARAFLYLA 323

Query: 363 EARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQI 422
           EAR+D+RHRK  K  L +++TV + L AD   +GF+SKSEY++ KLKEMGKI++KD+ Q+
Sbjct: 324 EARIDRRHRKAVKLALNREITVDDLLKADTYQHGFISKSEYIVLKLKEMGKITQKDIDQV 383

Query: 423 CHKFDRLDTGNCGKITLADLM 443
             +F++LD    GKITL DL+
Sbjct: 384 VIQFEKLDPNQIGKITLPDLL 404

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX6|TPK4_ARATH Two-pore potassium channel 4 OS=Arabidopsis thaliana GN=TPK4 PE=2 SV=2

 Score =  214 bits (546), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 167/270 (61%), Gaps = 25/270 (9%)

Query: 161 SIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTV 220
           +I+  A++LL++YL+ GV  Y F R  F+ +ET+  VDA YF IVT  T+GYGDI P T 
Sbjct: 33  TILVLAMILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTS 92

Query: 221 PTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGR 280
            TK+ +I+ V  G  F+D LL  +VS+VL LQEN +L  I    ++        D   G+
Sbjct: 93  TTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAED---GK 149

Query: 281 MRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGR 340
           +R++ K+ LA   V LC+G G   +H  E+L WLDS YLSV+SVTTVGYGD+ FK++ GR
Sbjct: 150 IRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGR 209

Query: 341 LFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSK 400
            FA  WLL+ST+A+A  FLYLAE R+D+              TV +            S+
Sbjct: 210 GFAVFWLLLSTIAMATLFLYLAEMRIDR-------------TTVMKLPP---------SE 247

Query: 401 SEYVIYKLKEMGKISEKDVMQICHKFDRLD 430
           SE++++KL+E G+ISE D+ QI  +F+ L+
Sbjct: 248 SEFIVFKLRESGRISEDDIKQIVREFENLE 277

Voltage-independent, instantaneously activating, potassium-selective plasma membrane ion channel. Open rectifier. Regulated by cytoplasmic pH and extra-cellular calcium. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+) or Li(+).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBL1|TPK1_ARATH Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/284 (37%), Positives = 170/284 (59%), Gaps = 3/284 (1%)

Query: 163 VRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPT 222
           +R+ ++ L LYL++G   ++  R   +  +T  VVDALYFCIVTM T+GYGD+ P +  +
Sbjct: 76  LRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSAS 135

Query: 223 KVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMR 282
           ++ +  FV  G   V  LL+    Y+++ QE  L+R       ++S G   I  +    +
Sbjct: 136 RLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFH---LRQSFGPTDILKELHTNK 192

Query: 283 IRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLF 342
           +R K      V+V+   +G   +  VEK+  + +FY    +VTT+GYGD++F S  GRLF
Sbjct: 193 LRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLF 252

Query: 343 ASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSE 402
           A  W+L S++ +A+ FLY+AE   + + R + KWVL + +T  +  AAD+D +G V  +E
Sbjct: 253 AVFWILTSSICLAQFFLYVAELNTENKQRALVKWVLTRRITNNDLEAADLDEDGVVGAAE 312

Query: 403 YVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEAN 446
           +++YKLKEMGKI EKD+  I  +F++LD    G +T +D++ A 
Sbjct: 313 FIVYKLKEMGKIDEKDISGIMDEFEQLDYDESGTLTTSDIVLAQ 356

Voltage-independent, large conductance and potassium-selective tonoplast ion channel. Regulated by cytoplasmic calcium and pH. Does not mediate slow-vacuolar (SV) ionic currents, but essential to establish VK currents. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+), Cs(+) or Li(+). Involved in intracellular K(+) redistribution and/or K(+) retranslocation between different tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFR0|KCO3_ARATH Potassium inward rectifier (Kir)-like channel 3 OS=Arabidopsis thaliana GN=KCO3 PE=1 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 123/162 (75%), Gaps = 3/162 (1%)

Query: 285 MKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS 344
           + VAL   VV  C   G  ++HFV K+GWLDSF  SVM VTTVG+GDRAF +  G   A+
Sbjct: 100 VAVALYFFVVTFC---GFLIVHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWLGTFLAA 156

Query: 345 IWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYV 404
           +WLLVSTLAVARAFL+LA+AR DKR+R+ AK VLG+ +++++F AADIDN+G +S +E+ 
Sbjct: 157 VWLLVSTLAVARAFLFLADARADKRNRERAKKVLGESISISQFFAADIDNDGRLSLAEFA 216

Query: 405 IYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEAN 446
           IYKLK+M KI+++D +QIC++FD+LD    G+ITL DL  A 
Sbjct: 217 IYKLKQMEKITQEDFIQICNQFDKLDRTQSGRITLVDLTTAT 258

Probable calcium-activated potassium channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LIN5|KCO2_ORYSJ Two pore potassium channel b OS=Oryza sativa subsp. japonica GN=TPKB PE=1 SV=1

 Score =  188 bits (478), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/326 (34%), Positives = 177/326 (54%), Gaps = 15/326 (4%)

Query: 127 AKSNLHRSKTAPAM----AVINDLKHHDAVPKPQF--GSQSIVRQAVVLLILYLSLGVTI 180
           A     R +TAP+        ++    DA PK  F  G +   R   +LL+ YL LG   
Sbjct: 23  AARRFRRCRTAPSSEPPPTDKDNSSAADAPPKTLFTGGGRPSFRLVGLLLVAYLLLGTIA 82

Query: 181 YWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDIL 240
           ++    + + + T   +DALYFC+VTM T+GYGD+ P +   K+ +  FV  G   V   
Sbjct: 83  FYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDAAKLLACAFVFAGVAVVGTF 142

Query: 241 LTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGI 300
           L+    Y+++ QE  L R +          S+ +       ++R K+  A  ++V  +  
Sbjct: 143 LSKAADYLVEKQEALLFRALH---------SHTMVRAMEMNKVRYKLYTAGLLLVAAVAS 193

Query: 301 GVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLY 360
           G  V+  VE +  +D+FY    +VTT+GYGDR+F S  GR FA  W+ VST+ VA  FLY
Sbjct: 194 GTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFFLY 253

Query: 361 LAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVM 420
            AE   ++R R++A+WVL +  T  +  AAD+D +  V  +++V+YKLKE+GKIS++D+ 
Sbjct: 254 AAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYKLKELGKISQEDIS 313

Query: 421 QICHKFDRLDTGNCGKITLADLMEAN 446
           +   +FD LD  + G ++ ADL  A 
Sbjct: 314 EFLDEFDNLDADHSGTLSPADLAAAQ 339

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of protein storage vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q850M0|KCO1_ORYSJ Two pore potassium channel a OS=Oryza sativa subsp. japonica GN=TPKA PE=1 SV=1

 Score =  178 bits (451), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 169/287 (58%), Gaps = 11/287 (3%)

Query: 164 RQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTK 223
           R   +LL +YL +GV  ++      +   T+ V+DALYFC+VTM T+GYGD+ P    TK
Sbjct: 65  RLVGLLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDLVPNNDTTK 124

Query: 224 VFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLR----TIKGGGHKESPGSYIIDVKKG 279
           + +  FV +G   V + ++ +  Y+++ QE    +     +KGG   E+     I+    
Sbjct: 125 LLACAFVFMGMAVVALFVSKVADYLVEKQEVLFFKALHTNLKGG---ETKMLRAIETN-- 179

Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
             RI+ K      ++VL I  G   +  VEKL  +DSFY    ++TT+GYGD++F S  G
Sbjct: 180 --RIKYKFYTNALLLVLSIISGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLG 237

Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVS 399
           R+FA  W++ ST+ +A+ F+YLAE   ++R + +A WVL + MT  +  AAD+D++  V 
Sbjct: 238 RVFAVFWIITSTIIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQVG 297

Query: 400 KSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEAN 446
            +E+V+YKLKE+GKI+++++     +F++LD  + G ++  DL  A 
Sbjct: 298 AAEFVVYKLKELGKINQEEISSFLEEFEKLDVDHSGTLSPYDLTLAQ 344

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of large vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P40310|TOK1_YEAST Outward-rectifier potassium channel TOK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOK1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 33/176 (18%)

Query: 198 DALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD--LQEN- 254
           +ALYFC V++ T+G GDI P++V  K+  ++F L G     ++L G++ ++    +Q++ 
Sbjct: 276 NALYFCTVSLLTVGLGDILPKSVGAKIMVLIFSLSG-----VVLMGLIVFMTRSIIQKSS 330

Query: 255 ----YLLRTIKGGGHKESPGSYIIDVKKG------------------RMRIRMKVALALG 292
               +  R  KG   +     + +D  K                   R +    +++ + 
Sbjct: 331 GPIFFFHRVEKG---RSKSWKHYMDSSKNLSEREAFDLMKCIRQTASRKQHWFSLSVTIA 387

Query: 293 VVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLL 348
           + +    +G  V  F E   + +  Y   + + T+GYGD A ++  GR F  IW L
Sbjct: 388 IFMAFWLLGALVFKFAENWSYFNCIYFCFLCLLTIGYGDYAPRTGAGRAFFVIWAL 443

Outwardly rectifying potassium channel.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
255557407	426	Calcium-activated outward-rectifying pot	0.948	0.995	0.730	0.0
356524927	430	PREDICTED: probable calcium-activated ou	0.953	0.990	0.733	0.0
449433623	425	PREDICTED: two-pore potassium channel 3-	0.946	0.995	0.753	0.0
224116730	435	outward rectifying potassium channel [Po	0.966	0.993	0.743	1e-178
356512161	426	PREDICTED: LOW QUALITY PROTEIN: probable	0.935	0.981	0.727	1e-174
224116438	428	outward rectifying potassium channel [Po	0.950	0.992	0.725	1e-173
225463410	509	PREDICTED: probable calcium-activated ou	0.914	0.803	0.723	1e-173
161334558	428	TPK1 [Nicotiana tabacum]	0.932	0.974	0.690	1e-168
15236780	436	putative calcium-activated outward-recti	0.948	0.972	0.623	1e-151
297804366	438	hypothetical protein ARALYDRAFT_914875 [	0.950	0.970	0.626	1e-149

>gi|255557407|ref|XP_002519734.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis] gi|223541151|gb|EEF42707.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/449 (73%), Positives = 367/449 (81%), Gaps = 25/449 (5%)

Query: 1   MEKEPLLCYLSPRKKPTP--PPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDAS 58
           ME +PLL Y SPRK+  P  PP L PLPED E+S+P+ I+PSELK+RLIFGP  SP D++
Sbjct: 1   MENDPLLPYHSPRKRTPPQLPPILCPLPEDDEVSLPLSISPSELKERLIFGPSPSPNDST 60

Query: 59  PIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSW 118
           P+ +ALT SL SP  S S+               Q  +  D+   P+  Q      PQSW
Sbjct: 61  PVFEALTHSLNSPRPSCSN---------------QEFNFHDS---PRHHQQ-----PQSW 97

Query: 119 LIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGV 178
           LIDPNY++ K+NLHRSKTAPAMAVIND  +   +PKPQFGSQSIVRQA VLLILYLS GV
Sbjct: 98  LIDPNYSWTKTNLHRSKTAPAMAVINDSLNSSHIPKPQFGSQSIVRQAFVLLILYLSFGV 157

Query: 179 TIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVD 238
            IYW NR NF A+ETHPVVDA YFCIVTMCTIGYGDITP +  TK+FSILFVLVGFGF+D
Sbjct: 158 VIYWLNRGNFLANETHPVVDAFYFCIVTMCTIGYGDITPNSTSTKLFSILFVLVGFGFID 217

Query: 239 ILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCI 298
           ILL+GMVSY+LDLQENYLLR  K GG KE+ GS I DVKKGRMRIRMKVALALGVVVLCI
Sbjct: 218 ILLSGMVSYMLDLQENYLLRNAKRGGDKEAAGSVIFDVKKGRMRIRMKVALALGVVVLCI 277

Query: 299 GIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAF 358
           G+G GVMHF+E LGWLDSFYLSVMSVTTVGYGD+AF S+PGR+FASIWLLVSTLAVARAF
Sbjct: 278 GVGCGVMHFLENLGWLDSFYLSVMSVTTVGYGDKAFTSLPGRIFASIWLLVSTLAVARAF 337

Query: 359 LYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKD 418
           LYLAEARVDKRHR+MAKWVLGQ MTV+EFLAADID NGFVSKSEYVIYKLKEMGK+SEKD
Sbjct: 338 LYLAEARVDKRHRRMAKWVLGQHMTVSEFLAADIDQNGFVSKSEYVIYKLKEMGKVSEKD 397

Query: 419 VMQICHKFDRLDTGNCGKITLADLMEANK 447
           V+QIC  FDR+D GNCGKITLADLME ++
Sbjct: 398 VLQICQTFDRIDAGNCGKITLADLMETHQ 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524927|ref|XP_003531079.1| PREDICTED: probable calcium-activated outward-rectifying potassium channel 6-like [Glycine max]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/451 (73%), Positives = 369/451 (81%), Gaps = 25/451 (5%)

Query: 1   MEKEPLLCYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPV---TSPKDA 57
           MEKEPLL Y SPRKKP P PPL PLPE  EI +PM  TPSE KDRLIFGP     SP+D 
Sbjct: 1   MEKEPLLPYFSPRKKPQPFPPLCPLPEHDEIVLPM--TPSEFKDRLIFGPSPSSASPRDP 58

Query: 58  SPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQS 117
           SP+ DALTLS  SP   +SS+S      +D +S             P    S Q Q   S
Sbjct: 59  SPLADALTLSYNSPKCPSSSNS------QDYAS-------------PPLFDSQQQQPLNS 99

Query: 118 WLIDPNY-AFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSL 176
           WL+DPNY ++ K+NLHRSKTAPAMAVI+D   H AV +PQF SQSIVRQ V+LL LYL+L
Sbjct: 100 WLLDPNYESWRKTNLHRSKTAPAMAVISDFNPHTAVQRPQFASQSIVRQGVILLALYLAL 159

Query: 177 GVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGF 236
           GV IYWFNRHNFTA+ETHPVVDALYFCIVTMCTIGYGDITP +  TK+FSILFVLVGFGF
Sbjct: 160 GVVIYWFNRHNFTATETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGF 219

Query: 237 VDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVL 296
           +DILL+GMVSYVLDLQEN++L  +KG   ++   SYIIDVKKGRMRIR+KVALALGVVV+
Sbjct: 220 IDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVI 279

Query: 297 CIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVAR 356
           C G+GVGVMHFVEKLGWLDSFYLSVMSVTTVGYGD AFK+M GR+FA+IWLLVSTLAVAR
Sbjct: 280 CTGVGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVAR 339

Query: 357 AFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
           AFLYLAEARVDKRHR+MAKW+LGQDMTV+EFLAADIDNNGFVSKSEYVIYKLKEMGK+SE
Sbjct: 340 AFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSE 399

Query: 417 KDVMQICHKFDRLDTGNCGKITLADLMEANK 447
           KD+MQ+  KFDRLD GNCGKITLADLME + 
Sbjct: 400 KDIMQVSEKFDRLDAGNCGKITLADLMENHN 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433623|ref|XP_004134597.1| PREDICTED: two-pore potassium channel 3-like [Cucumis sativus] gi|449505938|ref|XP_004162609.1| PREDICTED: two-pore potassium channel 3-like [Cucumis sativus]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/447 (75%), Positives = 376/447 (84%), Gaps = 24/447 (5%)

Query: 1   MEKEPLLCYLSPRKKPTP-PPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASP 59
           MEKEPLL YLSPR KP+P PP L PLPE+ EI++PM  TP+E KDRLIFGP +SP+DASP
Sbjct: 1   MEKEPLLPYLSPRGKPSPIPPQLCPLPENDEITLPM--TPTEFKDRLIFGPSSSPQDASP 58

Query: 60  IVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWL 119
           I DALTLSL+S   SASSS             Q  S+  D          SQ QS Q+WL
Sbjct: 59  IFDALTLSLSSSRPSASSSL------------QDPSTPLDP--------RSQSQSQQAWL 98

Query: 120 IDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVT 179
           +D NY + KSNLHRS+TAPAMAVIND+ H    PKPQFG QSI+RQAVVLLI+YLSLGV 
Sbjct: 99  VDSNYTWPKSNLHRSRTAPAMAVINDVNHSQE-PKPQFGKQSIIRQAVVLLIVYLSLGVL 157

Query: 180 IYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDI 239
           IYW NR NF+A ETHPVVDALYFCIVTMCTIGYGDITP +  TK+FS+LFVLVGFGF+DI
Sbjct: 158 IYWLNRDNFSAQETHPVVDALYFCIVTMCTIGYGDITPNSTSTKLFSVLFVLVGFGFIDI 217

Query: 240 LLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIG 299
           LL+GMVSYVLDLQE+YLLR +K G  +ES  SYIIDVKKGRMRIRMKVALALGVV+LCIG
Sbjct: 218 LLSGMVSYVLDLQESYLLRNVKRGVKRESGKSYIIDVKKGRMRIRMKVALALGVVILCIG 277

Query: 300 IGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL 359
           +G+GVMHFVE LGWLDSFYLSVMSVTTVGYGD+AFKSM GR+FASIWLLVSTLAVARAFL
Sbjct: 278 VGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFL 337

Query: 360 YLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDV 419
           YLAEARVDKRHR MAKW+LGQDMTV+EFLAADIDNNGFVS+SEYVIYKLKEMGK+SEKDV
Sbjct: 338 YLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDV 397

Query: 420 MQICHKFDRLDTGNCGKITLADLMEAN 446
           MQI + FDRLD+G CGKITLADL+E++
Sbjct: 398 MQISNNFDRLDSGKCGKITLADLLESH 424

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116730|ref|XP_002331863.1| outward rectifying potassium channel [Populus trichocarpa] gi|222875381|gb|EEF12512.1| outward rectifying potassium channel [Populus trichocarpa]

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 333/448 (74%), Positives = 373/448 (83%), Gaps = 16/448 (3%)

Query: 1   MEKEPLLCYLSPRKK-PTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVT-SPKDAS 58
           MEKEPLL YLSPRK+ P P PPLFPLPED EIS+P+P+TPSELKDRLIFGP + SP+D S
Sbjct: 1   MEKEPLLPYLSPRKRIPQPQPPLFPLPEDDEISLPLPLTPSELKDRLIFGPSSASPRDPS 60

Query: 59  PIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSW 118
           P+++ALTLSL SP +S  +   +SF   DS  LQ               Q  Q Q  QSW
Sbjct: 61  PLLEALTLSLNSPRSSTPNLDFSSFL--DSPHLQHHHQ-----------QQQQQQQQQSW 107

Query: 119 LIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGV 178
           L+DP+  + K+NLHRSKTAPAMAVINDL +H A+ KP+FGSQSIVRQA VLL+LYLSLGV
Sbjct: 108 LVDPDCQWTKTNLHRSKTAPAMAVINDL-NHPAITKPKFGSQSIVRQAFVLLVLYLSLGV 166

Query: 179 TIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVD 238
            IY  NR  F  + T+PVVDALYFCIVTMCTIGYGDITP +  TK+FSILFVL+GFGFVD
Sbjct: 167 LIYSLNRDKFKGNATNPVVDALYFCIVTMCTIGYGDITPDSTATKLFSILFVLIGFGFVD 226

Query: 239 ILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCI 298
           ILL+GMVSYVLDLQE++LLR +K G  KES GSYIIDVKKGRMRIRMKV LALGVVVLCI
Sbjct: 227 ILLSGMVSYVLDLQESHLLRNVKRGVEKESAGSYIIDVKKGRMRIRMKVGLALGVVVLCI 286

Query: 299 GIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAF 358
           G+GV  MHFVE+LGWLDS YLSVMSVTTVGYGDRAF S+ GR+FASIWLLVSTLAVARAF
Sbjct: 287 GVGVAFMHFVERLGWLDSLYLSVMSVTTVGYGDRAFTSLAGRIFASIWLLVSTLAVARAF 346

Query: 359 LYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKD 418
           LYLAEARVDKRHR +AKWVLGQ MTV+EFLAADIDNNGFVSKSEY IYKLKEM K+SEKD
Sbjct: 347 LYLAEARVDKRHRMLAKWVLGQHMTVSEFLAADIDNNGFVSKSEYAIYKLKEMEKVSEKD 406

Query: 419 VMQICHKFDRLDTGNCGKITLADLMEAN 446
           ++QIC +FDRLDTGNCGKITLADLME+ 
Sbjct: 407 ILQICQQFDRLDTGNCGKITLADLMESQ 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512161|ref|XP_003524789.1| PREDICTED: LOW QUALITY PROTEIN: probable calcium-activated outward-rectifying potassium channel 6-like [Glycine max]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 325/447 (72%), Positives = 366/447 (81%), Gaps = 29/447 (6%)

Query: 1   MEKEPLLCYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPV---TSPKDA 57
           MEKEPLL Y SPRKKP     L PLPE  EI +PM  TPSE KDRLIFGP     SP+D 
Sbjct: 1   MEKEPLLPYFSPRKKPQ----LCPLPEHDEIVLPM--TPSEFKDRLIFGPSPSSASPRDP 54

Query: 58  SPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQS 117
           SP+ DALTLS  SP  S+S+S       +D +S         + L   QQ+  QL S   
Sbjct: 55  SPLADALTLSHNSPKCSSSNS-------QDYAS---------SPLFDSQQKQQQLNS--- 95

Query: 118 WLIDPNY-AFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSL 176
           WL+DPNY ++ K+NLHRSKTAPAMAVI+D   H  V +P+F SQSIV Q V+LL LYL+L
Sbjct: 96  WLLDPNYESWRKTNLHRSKTAPAMAVISDFNPHSTVQRPKFASQSIVCQGVILLALYLAL 155

Query: 177 GVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGF 236
           GV IYWFNRHNFTA+ETHP+VDALYFCIVTMCTIGYGDITP +  TK+FSILFVLVGFGF
Sbjct: 156 GVVIYWFNRHNFTATETHPIVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGF 215

Query: 237 VDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVL 296
           +DILL+GMVSYVLDLQEN++L  +KG   ++   SYIIDVKKGRMRIR+KVALALGVVV+
Sbjct: 216 IDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVI 275

Query: 297 CIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVAR 356
           CIG+GVGVMHFVEKLGWLDSFYLSVMSVTTVGYGD AFK+M GR+FA+IWLLVSTLAVAR
Sbjct: 276 CIGVGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVAR 335

Query: 357 AFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
           AFLYLAEARVDKRHR+MAKW+LGQDMTV+EFLAADIDNNGFVSKSEYVIYKLKEMGK+SE
Sbjct: 336 AFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSE 395

Query: 417 KDVMQICHKFDRLDTGNCGKITLADLM 443
           KD+MQ+  KFDRLD GNCGKITLADLM
Sbjct: 396 KDIMQVSEKFDRLDAGNCGKITLADLM 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116438|ref|XP_002317301.1| outward rectifying potassium channel [Populus trichocarpa] gi|222860366|gb|EEE97913.1| outward rectifying potassium channel [Populus trichocarpa]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 325/448 (72%), Positives = 364/448 (81%), Gaps = 23/448 (5%)

Query: 1   MEKEPLLCYLSPRKKPTPPPPLFPLP-EDGEISIPMPITPSELKDRLIFGPVTS-PKDAS 58
           MEKEPLL Y+SPRK+   PPPL     ED EIS+P+P+TPSELKDRLIFGP +S P D S
Sbjct: 1   MEKEPLLPYVSPRKRTPQPPPLLCPLPEDDEISLPLPLTPSELKDRLIFGPSSSSPGDRS 60

Query: 59  PIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSW 118
           P+V+ALT SL SP  S+S+    SF   DS  LQQ                      QS+
Sbjct: 61  PLVEALTFSLNSPRPSSSNQDFNSFL--DSPELQQH------------------HHHQSY 100

Query: 119 LIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGV 178
           L+DPNY + K+NLHRSKTAPAMAVIND  +   + KP+FGSQSI+ QA +LL+LYLSLGV
Sbjct: 101 LVDPNYPWTKTNLHRSKTAPAMAVINDF-NQPVIAKPRFGSQSIIGQAFLLLVLYLSLGV 159

Query: 179 TIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVD 238
            IY  NR  F   ETHPV DALYFCIVTMCTIGYGDITP +  TK+FSILFVLVGFGF+D
Sbjct: 160 LIYSLNRDKFEGIETHPVADALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFID 219

Query: 239 ILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCI 298
           I L+GMVSYVLDLQE++LLR +K G  KES GSYIIDVKKGRMRIRMKV LALGVVVLCI
Sbjct: 220 IFLSGMVSYVLDLQESHLLRNVKRGVEKESAGSYIIDVKKGRMRIRMKVGLALGVVVLCI 279

Query: 299 GIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAF 358
           G+GVG MHFVE+LGWLDS YLSVMSVTTVGYGDRAF S+ GR+FASIWLLVSTLAVARAF
Sbjct: 280 GVGVGFMHFVERLGWLDSLYLSVMSVTTVGYGDRAFTSLAGRIFASIWLLVSTLAVARAF 339

Query: 359 LYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKD 418
           LYLAEARVDKRHR+MAKWVLGQ MTV+EFLAADIDNNGFVSKSEYVIYKLKEMGKISEKD
Sbjct: 340 LYLAEARVDKRHRRMAKWVLGQHMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKD 399

Query: 419 VMQICHKFDRLDTGNCGKITLADLMEAN 446
           ++QIC +F+RLDTGNCGKITLADLME++
Sbjct: 400 ILQICQQFERLDTGNCGKITLADLMESH 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463410|ref|XP_002272049.1| PREDICTED: probable calcium-activated outward-rectifying potassium channel 6-like [Vitis vinifera]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 327/452 (72%), Positives = 366/452 (80%), Gaps = 43/452 (9%)

Query: 4   EPLLCYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASP--IV 61
           EPLL YLSPRK  + P PLFPLPE+ E+++P+  TPSE KDRLIFGP +S    S   ++
Sbjct: 91  EPLLPYLSPRK--SRPSPLFPLPEEDEVALPL--TPSEFKDRLIFGPSSSSPSDSSPLLI 146

Query: 62  DALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLID 121
           DALTL++ SP TS+S                     QD +L PQ Q          WL+D
Sbjct: 147 DALTLTINSPKTSSSID-------------------QDPLLQPQLQ---------PWLVD 178

Query: 122 P-------NYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYL 174
           P       N   +K+NLHRSKTAPAMAVIND +H    P+PQF S SIVRQ  VLL++YL
Sbjct: 179 PQSNWPKTNLHRSKTNLHRSKTAPAMAVINDFQHPSG-PRPQFRSPSIVRQGFVLLVVYL 237

Query: 175 SLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGF 234
            LG+ IYWFNR +F+A ETHPVVDALYFCIVTMCTIGYGDITP +  TK+FSILFVLVGF
Sbjct: 238 LLGIAIYWFNRDDFSADETHPVVDALYFCIVTMCTIGYGDITPVSTSTKLFSILFVLVGF 297

Query: 235 GFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVV 294
           GF+DILL+GMVSYVLDLQENYLLR+ KG G +++ GSYIIDVKKGRMRIRMKVALALGVV
Sbjct: 298 GFIDILLSGMVSYVLDLQENYLLRSAKGVGQRDT-GSYIIDVKKGRMRIRMKVALALGVV 356

Query: 295 VLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAV 354
           VLCIGIGVGVMHFVE+L WLDSFYLSVMSVTTVGYGDRAFKSMPGR+FASIWLLVSTLAV
Sbjct: 357 VLCIGIGVGVMHFVEELDWLDSFYLSVMSVTTVGYGDRAFKSMPGRIFASIWLLVSTLAV 416

Query: 355 ARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKI 414
           ARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKE+GK+
Sbjct: 417 ARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKELGKV 476

Query: 415 SEKDVMQICHKFDRLDTGNCGKITLADLMEAN 446
           SEKD+ QIC+KFDRLD+GNCGKITLADLME +
Sbjct: 477 SEKDISQICNKFDRLDSGNCGKITLADLMENH 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161334558|gb|ABX60975.1| TPK1 [Nicotiana tabacum]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/455 (69%), Positives = 354/455 (77%), Gaps = 38/455 (8%)

Query: 1   MEKEPLLCYLSPRKKPTPPP-----PLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPK 55
           MEKEPLL Y+S R  P PP       L PLPED EISIP P+TPSELK+RLIFG      
Sbjct: 1   MEKEPLLPYVSTRTPPHPPSYPAPISLCPLPEDNEISIPPPLTPSELKERLIFG------ 54

Query: 56  DASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSP 115
                           T+ AS+++  +F      +    +S + +       Q S L++ 
Sbjct: 55  ----------------TSEASATALDAF------TFNNFTSPELSASSSSSAQKSNLENT 92

Query: 116 ---QSWLIDPNY-AFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLI 171
               SWL+DPNY ++ KSNLHRSKTAPAMA IND+ H      PQFG  +IV Q VVLLI
Sbjct: 93  DIHNSWLLDPNYPSWTKSNLHRSKTAPAMATINDIDHSPDPKPPQFGKNTIVGQGVVLLI 152

Query: 172 LYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVL 231
           LYL+LGV IY   R +F A+ETHPVVDALYFCIVTMCTIGYGDITP + PTK+FSILFVL
Sbjct: 153 LYLTLGVGIYSLFRDHFKATETHPVVDALYFCIVTMCTIGYGDITPDSTPTKLFSILFVL 212

Query: 232 VGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALAL 291
           VGFGF+DILLTGMVSYVLDLQENYLLR+IK G   ++  SYIIDVKKGRMRIRMKVALAL
Sbjct: 213 VGFGFIDILLTGMVSYVLDLQENYLLRSIKSGSVHDAR-SYIIDVKKGRMRIRMKVALAL 271

Query: 292 GVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVST 351
           GVVVLCIGIGV VMHFVEKLGWLD+FYLSVMSVTTVGYGDRAF SM GR+FASIWLLVST
Sbjct: 272 GVVVLCIGIGVAVMHFVEKLGWLDAFYLSVMSVTTVGYGDRAFNSMAGRIFASIWLLVST 331

Query: 352 LAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEM 411
           LAVARAFLYLAEARVDKRHRKMAKWVL QD+TV++FLAADIDNNGFVSK+EYVIYKLKEM
Sbjct: 332 LAVARAFLYLAEARVDKRHRKMAKWVLDQDLTVSQFLAADIDNNGFVSKAEYVIYKLKEM 391

Query: 412 GKISEKDVMQICHKFDRLDTGNCGKITLADLMEAN 446
           GKIS+KDVM IC +F+RLD GNCG+ITLADLME++
Sbjct: 392 GKISDKDVMLICKQFERLDAGNCGRITLADLMESH 426

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236780|ref|NP_193550.1| putative calcium-activated outward-rectifying potassium channel 6 [Arabidopsis thaliana] gi|38605078|sp|Q9SVV6.1|TPK3_ARATH RecName: Full=Two-pore potassium channel 3; Short=AtTPK3; AltName: Full=Calcium-activated outward-rectifying potassium channel 6; Short=AtKCO6 gi|5817002|emb|CAB53657.1| potassium channel-like protein [Arabidopsis thaliana] gi|7268609|emb|CAB78818.1| potassium channel-like protein [Arabidopsis thaliana] gi|332658605|gb|AEE84005.1| putative calcium-activated outward-rectifying potassium channel 6 [Arabidopsis thaliana]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/444 (62%), Positives = 336/444 (75%), Gaps = 20/444 (4%)

Query: 4   EPLLCYL-SPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVT-SPKDASPIV 61
           +PLL Y+ SPR K  PP  LFPLPED E++IPMP+TPSE K+RLIFGP + SP+D+S  +
Sbjct: 7   DPLLQYMISPRLK-KPPQLLFPLPEDNEVAIPMPMTPSEFKERLIFGPFSCSPRDSSHFI 65

Query: 62  DALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLID 121
           D    S+  P+ S+SS++  + FS  S+                  Q+S      +    
Sbjct: 66  D----SMKQPSPSSSSTAVNNPFSDSSTLDPLLPPPPPQPEPWLSDQTSSHCQGHA---- 117

Query: 122 PNYAFAKSNLHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIY 181
                    LHRSKTAPAMAVINDL H      P   S+S+VRQA  LL++YLSLGV IY
Sbjct: 118 ---------LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVVRQAFALLVVYLSLGVLIY 168

Query: 182 WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILL 241
           W NR ++  ++THPVVD LYFCIVTMCTIGYGDITP +V TK+FSI+FVLVGFGF+DILL
Sbjct: 169 WLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILL 228

Query: 242 TGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIG 301
           +GMVSYVLDLQE+Y+L + K     E   SYIIDVKKGRMRIR+KVALALGVVVLCI +G
Sbjct: 229 SGMVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVG 288

Query: 302 VGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYL 361
           VG+MHF+E++GWLDSFYLSVMSVTTVGYGDRAFK++PGRLFA+IWLLVSTLAVARAFLYL
Sbjct: 289 VGIMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYL 348

Query: 362 AEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQ 421
           AEARVDKR+R+ AK VL + M+V++F AADIDNNG VSK+EYVIYKLKEM KI++KD++ 
Sbjct: 349 AEARVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILP 408

Query: 422 ICHKFDRLDTGNCGKITLADLMEA 445
           I  +FD+LD  + GKITL DL+E 
Sbjct: 409 ISKQFDKLDRCSNGKITLLDLLEG 432

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804366|ref|XP_002870067.1| hypothetical protein ARALYDRAFT_914875 [Arabidopsis lyrata subsp. lyrata] gi|297315903|gb|EFH46326.1| hypothetical protein ARALYDRAFT_914875 [Arabidopsis lyrata subsp. lyrata]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/445 (62%), Positives = 342/445 (76%), Gaps = 20/445 (4%)

Query: 4   EPLLCYL-SPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVT-SPKDASPIV 61
           +PLL Y+ SPR K  PP  LFPLPED E++IPMP+TPSE K+RLIFGP + SP+D+S  +
Sbjct: 7   DPLLQYMISPRLK-KPPQLLFPLPEDNEVAIPMPMTPSEFKERLIFGPFSRSPRDSSHFI 65

Query: 62  DALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLID 121
           D+++    SP+ S+SS++   F   DSS+               +        P+ W  D
Sbjct: 66  DSISQKQPSPSPSSSSTAVNPF--SDSST--------------LEPLLPPPPQPEPWFSD 109

Query: 122 PNYAFAKSN-LHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTI 180
            N +    + LHRSKTAPAMAVINDL H      P   S+S+VRQA  LL++YLSLGV I
Sbjct: 110 QNSSHCHGHALHRSKTAPAMAVINDLHHPIPQKDPTETSRSVVRQAFALLVVYLSLGVLI 169

Query: 181 YWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDIL 240
           YW NR ++  ++THPVVD LYFCIVTMCTIGYGDITP +V TK+FSI+FVLVGFGF+DIL
Sbjct: 170 YWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDIL 229

Query: 241 LTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGI 300
           L+GMVSYVLDLQE+Y+L + K     E   SYIIDVKKGRMRIR+KVALALGVVVLCI +
Sbjct: 230 LSGMVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAV 289

Query: 301 GVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLY 360
           G+G+MHF+E++GWLDSFYLSVMSVTTVGYGDRAFK++PGRLFA+IWLLVSTLAVARAFLY
Sbjct: 290 GIGIMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLY 349

Query: 361 LAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVM 420
           LAEARVDKR+R+ AK VL + M+V++F AADIDNNG VSK+EYVIYKLKEM KI++KD++
Sbjct: 350 LAEARVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDIL 409

Query: 421 QICHKFDRLDTGNCGKITLADLMEA 445
            I  +FD+LD  + GKITL DL+E 
Sbjct: 410 PISKQFDKLDRCSNGKITLLDLLEG 434

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2117681	436	KCO6 "Ca2+ activated outward r	0.731	0.75	0.661	3.5e-122
TAIR|locus:2170423	443	KCO2 "Ca2+ activated outward r	0.733	0.740	0.620	5.5e-113
TAIR|locus:2141375	408	KCO5 "Ca2+ activated outward r	0.700	0.767	0.591	6.8e-95
TAIR|locus:2196155	284	TPK4 [Arabidopsis thaliana (ta	0.521	0.820	0.409	2e-49
TAIR|locus:2162162	363	KCO1 "CA2+ ACTIVATED OUTWARD R	0.702	0.865	0.355	6.7e-49
TAIR|locus:2170413	260	KCO3 "AT5G46360" [Arabidopsis	0.315	0.542	0.602	6e-48
UNIPROTKB|Q8LIN5	349	TPKB "Two pore potassium chann	0.691	0.885	0.346	3.4e-45
UNIPROTKB|Q850M0	347	TPKA "Two pore potassium chann	0.599	0.772	0.347	9.1e-45
UNIPROTKB|Q8E842	131	Q8E842 "Potassium/ion transpor	0.187	0.641	0.333	7e-08
TIGR_CMR|SO_A0098	131	SO_A0098 "potassium/ion transp	0.187	0.641	0.333	7e-08

TAIR|locus:2117681 KCO6 "Ca2+ activated outward rectifying K+ channel 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1093 (389.8 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
 Identities = 217/328 (66%), Positives = 258/328 (78%)

Query:   118 WLIDPNYAFAKSN-LHRSKTAPAMAVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSL 176
             WL D   +  + + LHRSKTAPAMAVINDL H      P   S+S+VRQA  LL++YLSL
Sbjct:   104 WLSDQTSSHCQGHALHRSKTAPAMAVINDLHHPIRQKDPTETSRSVVRQAFALLVVYLSL 163

Query:   177 GVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGF 236
             GV IYW NR ++  ++THPVVD LYFCIVTMCTIGYGDITP +V TK+FSI+FVLVGFGF
Sbjct:   164 GVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGF 223

Query:   237 VDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKXXXXXXXXXX 296
             +DILL+GMVSYVLDLQE+Y+L + K     E   SYIIDVKKGRMRIR+K          
Sbjct:   224 IDILLSGMVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVL 283

Query:   297 XXXXXXXXMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVAR 356
                     MHF+E++GWLDSFYLSVMSVTTVGYGDRAFK++PGRLFA+IWLLVSTLAVAR
Sbjct:   284 CIAVGVGIMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVAR 343

Query:   357 AFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
             AFLYLAEARVDKR+R+ AK VL + M+V++F AADIDNNG VSK+EYVIYKLKEM KI++
Sbjct:   344 AFLYLAEARVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITD 403

Query:   417 KDVMQICHKFDRLDTGNCGKITLADLME 444
             KD++ I  +FD+LD  + GKITL DL+E
Sbjct:   404 KDILPISKQFDKLDRCSNGKITLLDLLE 431

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2170423 KCO2 "Ca2+ activated outward rectifying K+ channel 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1032 (368.3 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
 Identities = 209/337 (62%), Positives = 255/337 (75%)

Query:   119 LIDPNYAFAKS----NLHRSKTAPAMAVINDLKH-HDAVPKPQFGSQSIVRQAVVLLILY 173
             L +PN    KS    N HRSKTAPAMA IN++ H +D     Q  S++IV QAV LL++Y
Sbjct:    97 LTEPNKPVRKSKPTINFHRSKTAPAMAAINNISHPNDPKTDQQSDSKTIVNQAVALLVVY 156

Query:   174 LSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVG 233
             LSLGV IYW NR ++   +THPVVDALYFCIVTMCTIGYGDITP +V TK+FSI FVLVG
Sbjct:   157 LSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVG 216

Query:   234 FGFVDILLTGMVSYVLDLQENYLLRTIKGGG----HKESPGSYIIDVKKGRMRIRMKXXX 289
             FGF+DILL+GMV+YVLDLQENY+L T +        ++   SYIIDVKKGRMRIR+K   
Sbjct:   217 FGFMDILLSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYIIDVKKGRMRIRLKVGL 276

Query:   290 XXXXXXXXXXXXXXXMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
                            MHFVEK+GWLDSFY SVMSVTTVGYGDRAF ++ GRL A++WLLV
Sbjct:   277 ALGVVVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRAFNTLAGRLLAAMWLLV 336

Query:   350 STLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLK 409
             STLAVARA L+LAE+RVDKR+R+ AK VLG+ M++++FL ADID NG VSK+E+VIYKLK
Sbjct:   337 STLAVARAILFLAESRVDKRNRERAKKVLGESMSISQFLDADIDCNGCVSKAEFVIYKLK 396

Query:   410 EMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEAN 446
             +M KI+EKD+  I  +FD+LD  N G+ITL DL+E++
Sbjct:   397 KMDKITEKDINPIGFQFDKLDRTNSGRITLLDLLESS 433

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2141375 KCO5 "Ca2+ activated outward rectifying K+ channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 190/321 (59%), Positives = 241/321 (75%)

Query:   131 LHRSKTAPAMAVINDLKHHDA-VPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFT 189
             LHRS+TAPAM +I DL+       KP   S+SI+RQA+ LLI+YL+LGV+IY FNR +++
Sbjct:    84 LHRSRTAPAMVIIKDLRTKPPETKKPSPVSKSIIRQAIFLLIVYLTLGVSIYSFNRDHYS 143

Query:   190 ASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVL 249
               ETHPVVDALYFCIVTMCTIGYGDI P T  TK+F+++FVL GFGF+DILL+G+V+YVL
Sbjct:   144 GIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVL 203

Query:   250 DLQENYLLRTIKGGGHKE-------SPGSYIIDVKKGRMRIRMKXXXXXXXXXXXXXXXX 302
             DLQE+ +L  I+   H +       S   YIID +KGRMRIRMK                
Sbjct:   204 DLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIRMKVCLALCVVVLCIGVGA 263

Query:   303 XXMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLA 362
               +HFVE+LG++DS YLSVMSVTTVGYGDRAFK++ GRLFA++WLLVSTLAVARAFLYLA
Sbjct:   264 LVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQGRLFAAVWLLVSTLAVARAFLYLA 323

Query:   363 EARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQI 422
             EAR+D+RHRK  K  L +++TV + L AD   +GF+SKSEY++ KLKEMGKI++KD+ Q+
Sbjct:   324 EARIDRRHRKAVKLALNREITVDDLLKADTYQHGFISKSEYIVLKLKEMGKITQKDIDQV 383

Query:   423 CHKFDRLDTGNCGKITLADLM 443
               +F++LD    GKITL DL+
Sbjct:   384 VIQFEKLDPNQIGKITLPDLL 404

GO:0005267 "potassium channel activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2196155 TPK4 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 99/242 (40%), Positives = 146/242 (60%)

Query:   161 SIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTV 220
             +I+  A++LL++YL+ GV  Y F R  F+ +ET+  VDA YF IVT  T+GYGDI P T 
Sbjct:    33 TILVLAMILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTS 92

Query:   221 PTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGR 280
              TK+ +I+ V  G  F+D LL  +VS+VL LQEN +L  I    ++ +   +I +   G+
Sbjct:    93 TTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNR-AIRDHIAE--DGK 149

Query:   281 MRIRMKXXXXXXXXXXXXXXXXXXMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGR 340
             +R++ K                  +H  E+L WLDS YLSV+SVTTVGYGD+ FK++ GR
Sbjct:   150 IRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGR 209

Query:   341 LFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSK 400
              FA  WLL+ST+A+A  FLYLAE R+D+        V+    + +EF+   +  +G +S+
Sbjct:   210 GFAVFWLLLSTIAMATLFLYLAEMRIDRTT------VMKLPPSESEFIVFKLRESGRISE 263

Query:   401 SE 402
              +
Sbjct:   264 DD 265

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

TAIR|locus:2162162 KCO1 "CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 116/326 (35%), Positives = 183/326 (56%)

Query:   128 KSNLHRSKTAP-AMAVIND-LKHHDAVPKPQ----FGSQSI-VRQAVVLLILYLSLGVTI 180
             K  L RS++AP    + ND +K  +  P P     F   +  +R+ ++ L LYL++G   
Sbjct:    34 KRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLC 93

Query:   181 YWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDIL 240
             ++  R   +  +T  VVDALYFCIVTM T+GYGD+ P +  +++ +  FV  G   V  L
Sbjct:    94 FYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHL 153

Query:   241 LTGMVSYVLDLQENYLLRTIKGGGH-KESPGSYIIDVKKGRMRIRMKXXXXXXXXXXXXX 299
             L+    Y+++ QE  L+R      H ++S G   I  +    ++R K             
Sbjct:   154 LSRAADYLVEKQEALLVRAF----HLRQSFGPTDILKELHTNKLRYKCYATCLVLVVLFI 209

Query:   300 XXXXXMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL 359
                  +  VEK+  + +FY    +VTT+GYGD++F S  GRLFA  W+L S++ +A+ FL
Sbjct:   210 VGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLFAVFWILTSSICLAQFFL 269

Query:   360 YLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDV 419
             Y+AE   + + R + KWVL + +T  +  AAD+D +G V  +E+++YKLKEMGKI EKD+
Sbjct:   270 YVAELNTENKQRALVKWVLTRRITNNDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEKDI 329

Query:   420 MQICHKFDRLDTGNCGKITLADLMEA 445
               I  +F++LD    G +T +D++ A
Sbjct:   330 SGIMDEFEQLDYDESGTLTTSDIVLA 355

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005216 "ion channel activity" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015269 "calcium-activated potassium channel activity" evidence=IDA

TAIR|locus:2170413 KCO3 "AT5G46360" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 85/141 (60%), Positives = 114/141 (80%)

Query:   305 MHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEA 364
             +HFV K+GWLDSF  SVM VTTVG+GDRAF +  G   A++WLLVSTLAVARAFL+LA+A
Sbjct:   117 VHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWLGTFLAAVWLLVSTLAVARAFLFLADA 176

Query:   365 RVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICH 424
             R DKR+R+ AK VLG+ +++++F AADIDN+G +S +E+ IYKLK+M KI+++D +QIC+
Sbjct:   177 RADKRNRERAKKVLGESISISQFFAADIDNDGRLSLAEFAIYKLKQMEKITQEDFIQICN 236

Query:   425 KFDRLDTGNCGKITLADLMEA 445
             +FD+LD    G+ITL DL  A
Sbjct:   237 QFDKLDRTQSGRITLVDLTTA 257

GO:0005509 "calcium ion binding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q8LIN5 TPKB "Two pore potassium channel b" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 113/326 (34%), Positives = 171/326 (52%)

Query:   127 AKSNLHRSKTAPAMAVINDLKHH----DAVPKPQF--GSQSIVRQAVVLLILYLSLGVTI 180
             A     R +TAP+       K +    DA PK  F  G +   R   +LL+ YL LG   
Sbjct:    23 AARRFRRCRTAPSSEPPPTDKDNSSAADAPPKTLFTGGGRPSFRLVGLLLVAYLLLGTIA 82

Query:   181 YWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDIL 240
             ++    + + + T   +DALYFC+VTM T+GYGD+ P +   K+ +  FV  G   V   
Sbjct:    83 FYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDAAKLLACAFVFAGVAVVGTF 142

Query:   241 LTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRM-RIRMKXXXXXXXXXXXXX 299
             L+    Y+++ QE  L R +    H  +       V+   M ++R K             
Sbjct:   143 LSKAADYLVEKQEALLFRAL----HSHTM------VRAMEMNKVRYKLYTAGLLLVAAVA 192

Query:   300 XXXXXMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL 359
                  +  VE +  +D+FY    +VTT+GYGDR+F S  GR FA  W+ VST+ VA  FL
Sbjct:   193 SGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFFL 252

Query:   360 YLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDV 419
             Y AE   ++R R++A+WVL +  T  +  AAD+D +  V  +++V+YKLKE+GKIS++D+
Sbjct:   253 YAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYKLKELGKISQEDI 312

Query:   420 MQICHKFDRLDTGNCGKITLADLMEA 445
              +   +FD LD  + G ++ ADL  A
Sbjct:   313 SEFLDEFDNLDADHSGTLSPADLAAA 338

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

UNIPROTKB|Q850M0 TPKA "Two pore potassium channel a" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 97/279 (34%), Positives = 161/279 (57%)

Query:   168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
             +LL +YL +GV  ++      +   T+ V+DALYFC+VTM T+GYGD+ P    TK+ + 
Sbjct:    69 LLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDLVPNNDTTKLLAC 128

Query:   228 LFVLVGFGFVDILLTGMVSYVLDLQENYLLRTI----KGGGHKESPGSYIIDVKKGRMRI 283
              FV +G   V + ++ +  Y+++ QE    + +    KGG   E+     I+      RI
Sbjct:   129 AFVFMGMAVVALFVSKVADYLVEKQEVLFFKALHTNLKGG---ETKMLRAIETN----RI 181

Query:   284 RMKXXXXXXXXXXXXXXXXXXMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFA 343
             + K                  +  VEKL  +DSFY    ++TT+GYGD++F S  GR+FA
Sbjct:   182 KYKFYTNALLLVLSIISGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLGRVFA 241

Query:   344 SIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEY 403
               W++ ST+ +A+ F+YLAE   ++R + +A WVL + MT  +  AAD+D++  V  +E+
Sbjct:   242 VFWIITSTIIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQVGAAEF 301

Query:   404 VIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442
             V+YKLKE+GKI+++++     +F++LD  + G ++  DL
Sbjct:   302 VVYKLKELGKINQEEISSFLEEFEKLDVDHSGTLSPYDL 340

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0031004 "potassium ion-transporting ATPase complex" evidence=IDA

UNIPROTKB|Q8E842 Q8E842 "Potassium/ion transporter, voltage-gated ion channel (VIC) superfamily" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 130 (50.8 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query:   167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
             ++ L++ + +G T++      +++ E    VDALYF ++TM TIGYGD+ P T  +K+F+
Sbjct:    28 LLFLLVTILIGSTLF------YSSVEGWSKVDALYFSVMTMSTIGYGDLVPTTDMSKIFT 81

Query:   227 ILFVLVGFGFVDILLTGMVSYVLDLQENYL 256
             I+F  +  G    L T +V   L+ ++  L
Sbjct:    82 IIFSFLSIGIFVSLNTKIVVMTLNQKKQKL 111

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_A0098 SO_A0098 "potassium/ion transporter, voltage-gated ion channel (VIC) superfamily" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 130 (50.8 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query:   167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
             ++ L++ + +G T++      +++ E    VDALYF ++TM TIGYGD+ P T  +K+F+
Sbjct:    28 LLFLLVTILIGSTLF------YSSVEGWSKVDALYFSVMTMSTIGYGDLVPTTDMSKIFT 81

Query:   227 ILFVLVGFGFVDILLTGMVSYVLDLQENYL 256
             I+F  +  G    L T +V   L+ ++  L
Sbjct:    82 IIFSFLSIGIFVSLNTKIVVMTLNQKKQKL 111

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69TN4	KCO3_ORYSJ	No assigned EC number	0.6344	0.7181	0.7039	yes	no
Q9SVV6	TPK3_ARATH	No assigned EC number	0.6238	0.9485	0.9724	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	4e-15
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	1e-08
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-04
pfam13499	60	pfam13499, EF_hand_5, EF-hand domain pair	0.002

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 69.5 bits (171), Expect = 4e-15
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           +LL+L L  G   Y      +        +DALYF  VT+ TIGYGDI P T   ++F+I
Sbjct: 1   ILLLLVLIFGTVYYSLEEEGWGWD----FLDALYFSFVTLTTIGYGDIVPLTDAGRLFTI 56

Query: 228 LFVLVGFGFVDILLT 242
           +++L+G     + L 
Sbjct: 57  IYILIGIPLFLLFLA 71

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 293 VVVLCIGIGVGVMHFVEKLGW----LDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLL 348
           +++L + I   V + +E+ GW    LD+ Y S +++TT+GYGD    +  GRLF  I++L
Sbjct: 1   ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYIL 60

Query: 349 VSTLAVARAFLYLA 362
           +           L 
Sbjct: 61  IGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 194 HPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQE 253
             +  A YF IVTM T+GYGDI P +   ++F+I  +++G   + +  T + +    +  
Sbjct: 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILG---ITVFATSISAIFGPVIR 223

Query: 254 NYLLRTIKGGGHK-ESPGSYII 274
             L R +KG          +II
Sbjct: 224 GNLKRLVKGRISHMHRKDHFII 245

Length = 393

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250
           + A+Y+ I TM T+GYGD+        +F I ++L   G    L+  M + V++
Sbjct: 252 ISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305

Length = 823

>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLMEA 445
             D D +G++   E          K+++++V ++    F+ +D    G+I+  + +EA
Sbjct: 2   LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEA 59

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.96
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	99.92
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.53
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.48
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.36
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.35
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.34
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.31
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.28
PRK10537	393	voltage-gated potassium channel; Provisional	99.22
PRK10537	393	voltage-gated potassium channel; Provisional	99.18
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.15
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.09
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.05
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	98.97
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	98.9
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	98.77
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	98.68
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	98.53
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.49
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.44
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.41
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	98.3
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.27
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	98.13
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.96
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.85
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	97.78
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	97.71
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	97.6
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	97.4
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	97.37
PRK10750	483	potassium transporter; Provisional	96.9
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	96.88
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	96.72
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	96.41
PF00520	200	Ion_trans: Ion transport protein calcium channel s	96.27
PF00520	200	Ion_trans: Ion transport protein calcium channel s	96.19
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	96.09
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	95.91
PRK05482	559	potassium-transporting ATPase subunit A; Provision	95.9
COG0168	499	TrkG Trk-type K+ transport systems, membrane compo	95.61
PRK10750	483	potassium transporter; Provisional	95.26
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	95.05
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	95.04
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	94.61
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	94.58
KOG0027	151	consensus Calmodulin and related proteins (EF-Hand	94.24
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	93.89
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	93.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	92.22
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	91.48
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	91.25
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	90.64
KOG0044	193	consensus Ca2+ sensor (EF-Hand superfamily) [Signa	90.12
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	88.16
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	88.11
TIGR00934	800	2a38euk potassium uptake protein, Trk family. The	87.9
TIGR00934	800	2a38euk potassium uptake protein, Trk family. The	86.88
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	86.69
KOG1053	1258	consensus Glutamate-gated NMDA-type ion channel re	86.57
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	86.4
KOG4440	993	consensus NMDA selective glutamate-gated ion chann	85.88
PTZ00183	158	centrin; Provisional	85.87
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	85.7
KOG0038	189	consensus Ca2+-binding kinase interacting protein	85.47
cd00051	63	EFh EF-hand, calcium binding motif; A diverse supe	85.44
PLN02964	644	phosphatidylserine decarboxylase	85.28
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	85.19
COG0168	499	TrkG Trk-type K+ transport systems, membrane compo	85.14
cd00052	67	EH Eps15 homology domain; found in proteins implic	84.96
PRK12438	991	hypothetical protein; Provisional	84.7
cd05027	88	S-100B S-100B: S-100B domain found in proteins sim	84.61
KOG1052	656	consensus Glutamate-gated kainate-type ion channel	84.03
KOG0034	187	consensus Ca2+/calmodulin-dependent protein phosph	83.82
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	83.69
cd05023	89	S-100A11 S-100A11: S-100A11 domain found in protei	82.91
PTZ00184	149	calmodulin; Provisional	80.98
PTZ00183	158	centrin; Provisional	80.75
cd00252	116	SPARC_EC SPARC_EC; extracellular Ca2+ binding doma	80.71
KOG0027	151	consensus Calmodulin and related proteins (EF-Hand	80.51

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.9e-28  Score=235.11  Aligned_cols=190  Identities=22%  Similarity=0.370  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHhhhccccc---------------------------------------CCCCCCChhhHHHhheee
Q 013211          166 AVVLLILYLSLGVTIYWFNRHNF---------------------------------------TASETHPVVDALYFCIVT  206 (447)
Q Consensus       166 ~~i~l~l~i~~g~~i~~~~~~~~---------------------------------------~~~~~~s~~da~yf~~vt  206 (447)
                      ++++.+.|+++|+.+|-..+.+-                                       ....-|.|..||||+.+.
T Consensus        12 Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYFa~TV   91 (350)
T KOG4404|consen   12 LIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYFATTV   91 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEEEEEE
Confidence            66677899999999997532110                                       112459999999999999


Q ss_pred             eeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcceeeeccchhhHHHH
Q 013211          207 MCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMK  286 (447)
Q Consensus       207 ltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~~~~~~  286 (447)
                      +||||||.-.|.|..||+||++|+++||++-.+.+..++..+.... .++++++|+....++   +     +..+.  --
T Consensus        92 ItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~-ayil~~~r~~~~~r~---~-----~~S~~--~l  160 (350)
T KOG4404|consen   92 ITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFV-AYILRRCRRRLGRRR---W-----DVSVY--NL  160 (350)
T ss_pred             EeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccc---C-----CCcHH--HH
Confidence            9999999999999999999999999999999999988888776543 455666653221111   0     00000  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCc--------chhHHHHHHHHHHHHHHHHHH
Q 013211          287 VALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSM--------PGRLFASIWLLVSTLAVARAF  358 (447)
Q Consensus       287 l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~--------~gr~f~ii~il~G~~~va~~~  358 (447)
                      +.+.....++.++.|+.+|+.+|+|+|+||+||||+|+|||||||+|+.+.        ..+++..+||++|+.+++.++
T Consensus       161 ~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~  240 (350)
T KOG4404|consen  161 VLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALL  240 (350)
T ss_pred             HHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHH
Confidence            233334455567789999999999999999999999999999999998543        457899999999999999998


Q ss_pred             HHHHHHHH
Q 013211          359 LYLAEARV  366 (447)
Q Consensus       359 ~~l~~~~~  366 (447)
                      +.+.-.+.
T Consensus       241 NllvLrf~  248 (350)
T KOG4404|consen  241 NLLVLRFM  248 (350)
T ss_pred             HHHHHHHH
Confidence            88774443

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.5e-26  Score=236.29  Aligned_cols=173  Identities=27%  Similarity=0.503  Sum_probs=135.6

Q ss_pred             cccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHc
Q 013211          186 HNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLR---TIKG  262 (447)
Q Consensus       186 ~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r---~~~~  262 (447)
                      ........|+|.+|+|||++++||||||+++|.|..||++|++|+++|||++.++++.+++++.+...+...+   ..++
T Consensus       106 ~~~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~  185 (433)
T KOG1418|consen  106 DESPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQR  185 (433)
T ss_pred             ccCCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3344567799999999999999999999999999999999999999999999999999999998877765532   1110


Q ss_pred             CCCCCCCC----cceeeeccchhhH---HHHHHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccC
Q 013211          263 GGHKESPG----SYIIDVKKGRMRI---RMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFK  335 (447)
Q Consensus       263 ~~~~~~~~----~~i~~~~~~r~~~---~~~l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~  335 (447)
                      ........    .............   +..+.++++++++++..|+.++...|+|+|++|+||+++|+|||||||++|.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~  265 (433)
T KOG1418|consen  186 DRIRSNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPR  265 (433)
T ss_pred             hhhhhhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccC
Confidence            00000000    0111111111112   3566677777777888999999999999999999999999999999999999


Q ss_pred             Ccchh--------HHHHHHHHHHHHHHHHHH
Q 013211          336 SMPGR--------LFASIWLLVSTLAVARAF  358 (447)
Q Consensus       336 t~~gr--------~f~ii~il~G~~~va~~~  358 (447)
                      +..++        .+..+++++|...++.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  266 TLLGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             CCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence            98877        689999999999988777

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.53  E-value=3.5e-14  Score=114.31  Aligned_cols=72  Identities=31%  Similarity=0.554  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHh---HhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          295 VLCIGIGVGVMHF---VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARV  366 (447)
Q Consensus       295 ~~~i~~ga~~~~~---~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~  366 (447)
                      ++.+..|+.+++.   .|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.+++..++.+++.+.
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen    4 LLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344566666666   56799999999999999999999999999999999999999999999999999887654

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.48  E-value=4e-14  Score=113.96  Aligned_cols=77  Identities=35%  Similarity=0.767  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013211          169 LLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYV  248 (447)
Q Consensus       169 ~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l  248 (447)
                      +++++++.|++.+...+    +.+.|++.||+||+++|+|||||||++|.++.||+++++++++|++++++.++.+.+.+
T Consensus         2 ~~~~~l~~~~~~~~~~~----~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l   77 (79)
T PF07885_consen    2 ILLLVLAFGAIFFYISE----GSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVL   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHTT----SSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeHHHHHHHHHHH----hcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556677777776621    24679999999999999999999999999999999999999999999999999888876


Q ss_pred             H
Q 013211          249 L  249 (447)
Q Consensus       249 ~  249 (447)
                      .
T Consensus        78 ~   78 (79)
T PF07885_consen   78 T   78 (79)
T ss_dssp             H
T ss_pred             c
Confidence            4

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.36  E-value=1.2e-13  Score=143.21  Aligned_cols=83  Identities=22%  Similarity=0.281  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcc-----------chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHH
Q 013211          285 MKVALALGVVVLCIGIGVGVMHFVEKL-----------GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLA  353 (447)
Q Consensus       285 ~~l~l~l~i~~~~i~~ga~~~~~~e~~-----------s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~  353 (447)
                      ..+...+-+-++++++.+++.|..|..           +|-||+||.++|+|||||||.+|+|..||+++..+.++|+.+
T Consensus       231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSF  310 (654)
T KOG1419|consen  231 KELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISF  310 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHH
Confidence            345444545555666778888888753           699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 013211          354 VARAFLYLAEARVD  367 (447)
Q Consensus       354 va~~~~~l~~~~~~  367 (447)
                      |+..-+.+++-+.-
T Consensus       311 FALPAGILGSGfAL  324 (654)
T KOG1419|consen  311 FALPAGILGSGFAL  324 (654)
T ss_pred             Hhcccccccchhhh
Confidence            99888887766543

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.35  E-value=2.6e-12  Score=132.71  Aligned_cols=92  Identities=21%  Similarity=0.357  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHH
Q 013211          162 IVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILL  241 (447)
Q Consensus       162 ~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~  241 (447)
                      +..+++++.+..+++++++|++|+++-. ....+...++|||++|||||||||++|.|..||+++...++.|+.++++.+
T Consensus       345 lglLllfL~~GI~iFStlvY~~Ek~~~~-~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPI  423 (477)
T KOG3713|consen  345 LGLLLLFLAVGIVIFSTLVYFAEKDEPD-TKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPI  423 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcch
Confidence            3334444445556667778888776533 347889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013211          242 TGMVSYVLDLQEN  254 (447)
Q Consensus       242 ~~~~~~l~~~~~~  254 (447)
                      ..+.+.+..-...
T Consensus       424 tiIv~nF~~~y~~  436 (477)
T KOG3713|consen  424 TIIVNNFSMYYSE  436 (477)
T ss_pred             HhHhhhHHHHHHH
Confidence            9998887754433

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.34  E-value=2.7e-12  Score=132.59  Aligned_cols=57  Identities=28%  Similarity=0.417  Sum_probs=51.0

Q ss_pred             cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD  367 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~  367 (447)
                      .+..-++|||++|||||||||.+|.|..||+++...++.|++++|+.+..+.+.+..
T Consensus       376 tSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~  432 (477)
T KOG3713|consen  376 TSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSM  432 (477)
T ss_pred             ccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHH
Confidence            457889999999999999999999999999999999999999998877776666554

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.31  E-value=8.6e-12  Score=122.60  Aligned_cols=89  Identities=25%  Similarity=0.424  Sum_probs=74.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecC--------CCCchhh
Q 013211          155 PQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRT--------VPTKVFS  226 (447)
Q Consensus       155 ~~~~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t--------~~gr~f~  226 (447)
                      ...+...++.+...+.++.++.|+.+|.-       -|+|+|+||+||||+|+|||||||+|+..        +..++++
T Consensus       153 ~~~S~~~l~~i~~~~~~~~i~~gaa~fs~-------~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~s  225 (350)
T KOG4404|consen  153 WDVSVYNLVLILFTACILLICCGAAMFSS-------VEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFS  225 (350)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhHHHhhc-------ccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHh
Confidence            44556777878888888889999998874       46799999999999999999999999863        4679999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          227 ILFVLVGFGFVDILLTGMVSYVLD  250 (447)
Q Consensus       227 i~~~l~Gi~l~~~~~~~~~~~l~~  250 (447)
                      ++|+++|+.+++.+++.++-.+..
T Consensus       226 f~fIL~Gl~vi~a~~NllvLrf~t  249 (350)
T KOG4404|consen  226 FVFILLGLCVIYALLNLLVLRFMT  249 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988777655543

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.28  E-value=7.8e-12  Score=129.88  Aligned_cols=91  Identities=24%  Similarity=0.386  Sum_probs=77.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHH
Q 013211          158 GSQSIVRQAVVLLILYLSLGVTIYWFNRHN---FTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGF  234 (447)
Q Consensus       158 ~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~---~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi  234 (447)
                      .++.++...++.++..++.+.++|..|.++   -.+.+..+|.||+||.++|+|||||||.+|.|+.||+++..|.++|+
T Consensus       229 H~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligi  308 (654)
T KOG1419|consen  229 HSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGI  308 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHH
Confidence            346777778888888888888999988763   22445678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 013211          235 GFVDILLTGMVSYV  248 (447)
Q Consensus       235 ~l~~~~~~~~~~~l  248 (447)
                      .+|++..+.+++-+
T Consensus       309 SFFALPAGILGSGf  322 (654)
T KOG1419|consen  309 SFFALPAGILGSGF  322 (654)
T ss_pred             HHHhcccccccchh
Confidence            99998877777643

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.22  E-value=5.5e-10  Score=115.90  Aligned_cols=111  Identities=16%  Similarity=0.190  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhHhc------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          297 CIGIGVGVMHFVEK------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRH  370 (447)
Q Consensus       297 ~i~~ga~~~~~~e~------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~~~  370 (447)
                      .++.|++.+++.|+      +++.||+||+++|+|||||||++|.+..||+|+++++++|+++++..++.+....++++.
T Consensus       147 l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l  226 (393)
T PRK10537        147 LLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRGNL  226 (393)
T ss_pred             HHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456665565554      799999999999999999999999999999999999999999998888877665555443


Q ss_pred             HHHHHHHhcccchhHHHhhhhccCCCCcChHHHHHHHHHHhC
Q 013211          371 RKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMG  412 (447)
Q Consensus       371 r~~~~~v~~~~~t~~~l~~~did~~g~vs~~ef~~~~L~~~~  412 (447)
                      ++..+....+..     ..+++---|.....+.+..+|.+.+
T Consensus       227 ~~~~~~~~~~~~-----~k~HvII~G~g~lg~~v~~~L~~~g  263 (393)
T PRK10537        227 KRLVKGRISHMH-----RKDHFIICGHSPLAINTYLGLRQRG  263 (393)
T ss_pred             HHHHHhhhhhcc-----cCCeEEEECCChHHHHHHHHHHHCC
Confidence            332221111100     1223333455455566666666554

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.18  E-value=1.1e-10  Score=121.03  Aligned_cols=110  Identities=20%  Similarity=0.314  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013211          169 LLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYV  248 (447)
Q Consensus       169 ~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l  248 (447)
                      ++...++.|++.+++.++++. ...+++.||+||+++|+||+||||++|.|..||+|+++++++|+.++++.++.+...+
T Consensus       143 ~~~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~  221 (393)
T PRK10537        143 SITSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV  221 (393)
T ss_pred             HHHHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555554443343343 3468999999999999999999999999999999999999999999999888888766


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCcceeeeccchhh
Q 013211          249 LDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMR  282 (447)
Q Consensus       249 ~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~~  282 (447)
                      ++...+...+..   +.....+.|++.|+-++..
T Consensus       222 i~~~l~~~~~~~---~~~~~~k~HvII~G~g~lg  252 (393)
T PRK10537        222 IRGNLKRLVKGR---ISHMHRKDHFIICGHSPLA  252 (393)
T ss_pred             HHHHHHHHHHhh---hhhcccCCeEEEECCChHH
Confidence            654433333221   2222346889999877653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.15  E-value=1.3e-08  Score=115.25  Aligned_cols=56  Identities=23%  Similarity=0.362  Sum_probs=51.8

Q ss_pred             hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      |+.|+||+++|+|||||||++|.|..+++|+++++++|++++++.++.+++.+.+.
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~  306 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG  306 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44479999999999999999999999999999999999999999999999877653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.09  E-value=2.6e-10  Score=129.00  Aligned_cols=92  Identities=26%  Similarity=0.443  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC---------------ChhhHHHhheeeeeeeccceeeecCCCCch
Q 013211          160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETH---------------PVVDALYFCIVTMCTIGYGDITPRTVPTKV  224 (447)
Q Consensus       160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~---------------s~~da~yf~~vtltTIGYGDi~P~t~~gr~  224 (447)
                      ..+++++++++++..++||++|++..........|               .|+.|+||+++|||||||||++|.|..+++
T Consensus       200 ~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i  279 (823)
T PLN03192        200 IRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMI  279 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHH
Confidence            35566677777777788888877653211111122               267799999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          225 FSILFVLVGFGFVDILLTGMVSYVLDL  251 (447)
Q Consensus       225 f~i~~~l~Gi~l~~~~~~~~~~~l~~~  251 (447)
                      |+++++++|+.++++.++.+++.+.+.
T Consensus       280 ~~i~~ml~g~~~~a~~ig~i~~li~~~  306 (823)
T PLN03192        280 FIIFYMLFNLGLTAYLIGNMTNLVVEG  306 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987654

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.05  E-value=9.5e-11  Score=116.52  Aligned_cols=53  Identities=26%  Similarity=0.472  Sum_probs=47.7

Q ss_pred             cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAE  363 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~  363 (447)
                      -+..|||||+++|||||||||.+|.|..|++...+..+.|++.+|..+-.+.+
T Consensus       392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs  444 (507)
T KOG1545|consen  392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS  444 (507)
T ss_pred             CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence            46899999999999999999999999999999999999999998876655543

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=98.97  E-value=9.1e-11  Score=116.65  Aligned_cols=73  Identities=27%  Similarity=0.474  Sum_probs=57.9

Q ss_pred             HHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013211          175 SLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYV  248 (447)
Q Consensus       175 ~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l  248 (447)
                      +++..+|+.+.+ ...+...+..|||||+++|||||||||++|.|..||++..+.++.|+..+++.+..+++.+
T Consensus       374 LFsSavYFAEad-e~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNF  446 (507)
T KOG1545|consen  374 LFSSAVYFAEAD-EPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF  446 (507)
T ss_pred             HHhceeeeeecC-CCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecc
Confidence            333344444433 3345567899999999999999999999999999999999999999998888777666544

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.90  E-value=5e-10  Score=116.69  Aligned_cols=95  Identities=21%  Similarity=0.433  Sum_probs=82.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHH
Q 013211          155 PQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHN-----FTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILF  229 (447)
Q Consensus       155 ~~~~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~-----~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~  229 (447)
                      +..++.+++.++.+++.+++..+.+++.++..+     |.++...+|+++.||.++||+||||||++.+|..||+|.+||
T Consensus       243 ktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvff  322 (1103)
T KOG1420|consen  243 KTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFF  322 (1103)
T ss_pred             hccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHH
Confidence            455677888889999999999888898887532     445556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013211          230 VLVGFGFVDILLTGMVSYVL  249 (447)
Q Consensus       230 ~l~Gi~l~~~~~~~~~~~l~  249 (447)
                      ++.|++.++..+..+...+-
T Consensus       323 il~glamfasyvpeiielig  342 (1103)
T KOG1420|consen  323 ILGGLAMFASYVPEIIELIG  342 (1103)
T ss_pred             HHHHHHHHHhhhHHHHHHHc
Confidence            99999999999888887764

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=98.77  E-value=7.7e-09  Score=106.44  Aligned_cols=59  Identities=24%  Similarity=0.424  Sum_probs=55.5

Q ss_pred             ccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          310 KLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       310 ~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      .|+|.+|+||+++++||||||+++|.|..||+|+++|.++|+.++..+++.+++...+.
T Consensus       113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~  171 (433)
T KOG1418|consen  113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS  171 (433)
T ss_pred             ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999998777664

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.68  E-value=4.8e-09  Score=109.47  Aligned_cols=82  Identities=23%  Similarity=0.410  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhc-------------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHH
Q 013211          286 KVALALGVVVLCIGIGVGVMHFVEK-------------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTL  352 (447)
Q Consensus       286 ~l~l~l~i~~~~i~~ga~~~~~~e~-------------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~  352 (447)
                      ++.-++.+++..++.++.+.|.+|+             .+|+++.||-++||+||||||+.-.|..||+|.+++++.|++
T Consensus       249 rl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gla  328 (1103)
T KOG1420|consen  249 RLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLA  328 (1103)
T ss_pred             hHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHH
Confidence            4444555566666677778888874             469999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013211          353 AVARAFLYLAEARVD  367 (447)
Q Consensus       353 ~va~~~~~l~~~~~~  367 (447)
                      ++|..+.-+.+++-.
T Consensus       329 mfasyvpeiielign  343 (1103)
T KOG1420|consen  329 MFASYVPEIIELIGN  343 (1103)
T ss_pred             HHHhhhHHHHHHHcc
Confidence            999777666655543

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=98.53  E-value=1.2e-08  Score=102.52  Aligned_cols=79  Identities=24%  Similarity=0.488  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD  250 (447)
Q Consensus       171 ~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~  250 (447)
                      +..++++.++|+.+.. .......+...||||.++||||.||||++|.|.+||+|..+..+-|+.++++.+..+++.+..
T Consensus       333 MAIIIFATvMfYAEKg-~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSR  411 (632)
T KOG4390|consen  333 MAIIIFATVMFYAEKG-SSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSR  411 (632)
T ss_pred             HHHHHHHHHHHhhhcc-ccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhH
Confidence            4456667777776643 344556788999999999999999999999999999999999999999888777766665543

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.49  E-value=1.5e-06  Score=89.45  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhc--------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHH
Q 013211          288 ALALGVVVLCIGIGVGVMHFVEK--------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL  359 (447)
Q Consensus       288 ~l~l~i~~~~i~~ga~~~~~~e~--------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~  359 (447)
                      ..++++.+.++++.+..+...|.        .+|+++.|+..+|+-+|||||++|+|..||.++++..++|.++.+..++
T Consensus       255 ~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvA  334 (489)
T KOG3684|consen  255 TVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVA  334 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHH
Confidence            33444445555666777777764        4599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013211          360 YLAEARVDKR  369 (447)
Q Consensus       360 ~l~~~~~~~~  369 (447)
                      .++......+
T Consensus       335 visRKLeLt~  344 (489)
T KOG3684|consen  335 VIARKLELTK  344 (489)
T ss_pred             HHHHHHHHHH
Confidence            9886665433

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.44  E-value=5.8e-07  Score=98.87  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=51.0

Q ss_pred             hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD  367 (447)
Q Consensus       313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~  367 (447)
                      |.-|+||++.|+|||||||..+.+...++|++++|++|++++|+++++++.++..
T Consensus       295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs  349 (727)
T KOG0498|consen  295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS  349 (727)
T ss_pred             HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence            4558999999999999999999999999999999999999999999999877654

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.41  E-value=6.3e-07  Score=98.58  Aligned_cols=90  Identities=26%  Similarity=0.363  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccc---------CCC-------CC----C-------ChhhHHHhheeeeeeeccce
Q 013211          162 IVRQAVVLLILYLSLGVTIYWFNRHNF---------TAS-------ET----H-------PVVDALYFCIVTMCTIGYGD  214 (447)
Q Consensus       162 ~v~~~~i~l~l~i~~g~~i~~~~~~~~---------~~~-------~~----~-------s~~da~yf~~vtltTIGYGD  214 (447)
                      ....+.+.+++..+.||++|++.....         ...       ..    +       .|..|+||+++||||+|||+
T Consensus       234 ~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~  313 (727)
T KOG0498|consen  234 AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGL  313 (727)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCc
Confidence            446666777777888888887642111         110       00    1       27889999999999999999


Q ss_pred             eeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDL  251 (447)
Q Consensus       215 i~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~  251 (447)
                      .+|.+...++|+++++++|+.+++++++++.+++...
T Consensus       314 ~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~  350 (727)
T KOG0498|consen  314 VHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL  350 (727)
T ss_pred             cCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence            9999999999999999999999999999999998754

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=98.30  E-value=1e-07  Score=95.92  Aligned_cols=72  Identities=29%  Similarity=0.485  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHH
Q 013211          287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAF  358 (447)
Q Consensus       287 l~l~l~i~~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~  358 (447)
                      +..+++-+.+-+++-+.++.+.|+       -+...|||++++||||.||||.+|.|-.|++|..+..+.|+++++..+
T Consensus       324 LGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV  402 (632)
T KOG4390|consen  324 LGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV  402 (632)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence            444444444444444445555553       347889999999999999999999999999999999999998876543

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.27  E-value=1.7e-06  Score=89.22  Aligned_cols=83  Identities=23%  Similarity=0.348  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013211          167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVS  246 (447)
Q Consensus       167 ~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~  246 (447)
                      .+.+.++++.+-..-..|+.+.......+|.+++|+..+|+.+|||||++|.|..||.+|++-+++|..+.+++++.+..
T Consensus       259 vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisR  338 (489)
T KOG3684|consen  259 VFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIAR  338 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHH
Confidence            33444555555444455665544446678999999999999999999999999999999999999999999999888887


Q ss_pred             HHH
Q 013211          247 YVL  249 (447)
Q Consensus       247 ~l~  249 (447)
                      .+.
T Consensus       339 KLe  341 (489)
T KOG3684|consen  339 KLE  341 (489)
T ss_pred             HHH
Confidence            654

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=98.13  E-value=6.1e-05  Score=79.69  Aligned_cols=55  Identities=22%  Similarity=0.425  Sum_probs=50.9

Q ss_pred             hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD  367 (447)
Q Consensus       313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~  367 (447)
                      |+.|+||++.+|||||||++.|.|...++|++..|++|.++-|.+|+.++..+..
T Consensus       424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ  478 (971)
T KOG0501|consen  424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ  478 (971)
T ss_pred             ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7789999999999999999999999999999999999999999999888876644

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.96  E-value=9.2e-06  Score=82.79  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=59.7

Q ss_pred             ChHHHHH-HHHHHHHHHHHHHHHHhhhcc--cccCC-----------CCCCChhhHHHhheeeeeeeccce--eeecCCC
Q 013211          158 GSQSIVR-QAVVLLILYLSLGVTIYWFNR--HNFTA-----------SETHPVVDALYFCIVTMCTIGYGD--ITPRTVP  221 (447)
Q Consensus       158 ~~~~~v~-~~~i~l~l~i~~g~~i~~~~~--~~~~~-----------~~~~s~~da~yf~~vtltTIGYGD--i~P~t~~  221 (447)
                      +|+..+. .++..++.++++|++.|.+..  ..+..           ....+|.+||+|++.|+||||||.  +.|..+.
T Consensus        33 ~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~  112 (336)
T PF01007_consen   33 SWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPY  112 (336)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHH
T ss_pred             CeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcch
Confidence            3544333 344555566666666554321  11111           112589999999999999999998  5677788


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          222 TKVFSILFVLVGFGFVDILLTGMVSYVL  249 (447)
Q Consensus       222 gr~f~i~~~l~Gi~l~~~~~~~~~~~l~  249 (447)
                      +-++.++-+++|+.+.++.++.+...+.
T Consensus       113 a~~l~~~q~~~g~l~~a~~~Glvfar~s  140 (336)
T PF01007_consen  113 AIFLVTIQSLVGLLLDAFMTGLVFARFS  140 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999999999999988877766553

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.85  E-value=8e-05  Score=75.95  Aligned_cols=52  Identities=25%  Similarity=0.232  Sum_probs=41.5

Q ss_pred             cchhhHHHHHHhhhhccccCC--CccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGD--RAFKSMPGRLFASIWLLVSTLAVARAFLYLA  362 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD--~~p~t~~gr~f~ii~il~G~~~va~~~~~l~  362 (447)
                      .+|.+||+|++-|.||||||.  +.|..+.+-+++++=.++|+++.+.+++.+-
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvf  136 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVF  136 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999  5677778888899999999999888877665

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=97.78  E-value=5.3e-05  Score=80.15  Aligned_cols=55  Identities=24%  Similarity=0.584  Sum_probs=51.3

Q ss_pred             hhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          196 VVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD  250 (447)
Q Consensus       196 ~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~  250 (447)
                      |+.++||.++.|||||||++.|.|...|+|.+..+++|-.+.+.+++.+...+..
T Consensus       424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ  478 (971)
T KOG0501|consen  424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ  478 (971)
T ss_pred             ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            8899999999999999999999999999999999999999999998888877653

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.71  E-value=0.0035  Score=67.00  Aligned_cols=56  Identities=13%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             hccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          309 EKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEAR  365 (447)
Q Consensus       309 e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~  365 (447)
                      +|..|+.++||++-|++||| |...|.+....+|..+--++|+.+|+..++.+-..+
T Consensus       400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi  455 (815)
T KOG0499|consen  400 EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVI  455 (815)
T ss_pred             CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999 777888877777777777889999998887766544

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=97.60  E-value=8.5e-05  Score=77.99  Aligned_cols=63  Identities=22%  Similarity=0.453  Sum_probs=52.1

Q ss_pred             CCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          191 SETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQE  253 (447)
Q Consensus       191 ~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~  253 (447)
                      ....+++.++||.++|++||||||.+|.-++.++..++.+.+.+.++.--+..++..+.+.|+
T Consensus       213 ~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erqk  275 (1087)
T KOG3193|consen  213 GKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQK  275 (1087)
T ss_pred             CceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence            345679999999999999999999999999999999888888887777776666666655443

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00016  Score=75.96  Aligned_cols=58  Identities=22%  Similarity=0.390  Sum_probs=49.0

Q ss_pred             cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      .+.+.++||.++|++||||||.+|.-....+..++.+.+.++++.--+.-++....|+
T Consensus       216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~er  273 (1087)
T KOG3193|consen  216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSER  273 (1087)
T ss_pred             eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999988888887776666666555443

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=97.37  E-value=0.0013  Score=68.45  Aligned_cols=151  Identities=18%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 013211          194 HPVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGS  271 (447)
Q Consensus       194 ~s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~  271 (447)
                      ....++.++..++++|.||.  |..--++.++++.++.+++|-.--+..-+.=...+.- ..+...+.+++..+..    
T Consensus       230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~v-l~~~~~~~~~~~~~~~----  304 (390)
T TIGR00933       230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAI-LLKQVYREIRRGIHPR----  304 (390)
T ss_pred             HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHH-HHHHHHHHHHccCCCc----
Confidence            45789999999999999995  5444466778888877777743221111110111100 0111223333222211    


Q ss_pred             ceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHh----ccchhhHHHHHHhhhhccc--cCC-CccCCcchhHHHH
Q 013211          272 YIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVE----KLGWLDSFYLSVMSVTTVG--YGD-RAFKSMPGRLFAS  344 (447)
Q Consensus       272 ~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e----~~s~~ds~Yfs~iTlTTVG--yGD-~~p~t~~gr~f~i  344 (447)
                      .+...+-.....+......+.. ++++.+++++....|    +.++.|+++=++..+.|||  +|. ...-+..+|++.+
T Consensus       305 ~v~~~~i~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~  383 (390)
T TIGR00933       305 IIFSRRIGGKTIDKAILISVWS-FFLVFALIFLLSILELISSGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILI  383 (390)
T ss_pred             eEEeEEECCeehHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHH
Confidence            1111111111111111111111 111112333333334    7899999999999999999  453 3345677899888


Q ss_pred             HHHHHH
Q 013211          345 IWLLVS  350 (447)
Q Consensus       345 i~il~G  350 (447)
                      +.|++|
T Consensus       384 ~~M~~G  389 (390)
T TIGR00933       384 VLMFIG  389 (390)
T ss_pred             HHHHcC
Confidence            888765

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>PRK10750 potassium transporter; Provisional

Probab=96.90  E-value=0.0099  Score=63.73  Aligned_cols=151  Identities=15%  Similarity=0.088  Sum_probs=79.2

Q ss_pred             ChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcc
Q 013211          195 PVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSY  272 (447)
Q Consensus       195 s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~  272 (447)
                      .+.++++.++..+||.||.  |+.--++..+++.++.+++|-..-+..-+.=...+.-. .+...+.+++...   ++..
T Consensus       304 ~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~R~~vl-~~~~~~~l~~~~~---P~~V  379 (483)
T PRK10750        304 TLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLL-FKQGNRELKRLVH---PNAV  379 (483)
T ss_pred             HHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHHHHHHH-HHHHHHHHHHhcC---CCce
Confidence            4667777766678999996  44433445566666666666433322211111111111 1112222322211   1111


Q ss_pred             e-eeeccchh--hHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccc--cCCC----ccCCcchhHHH
Q 013211          273 I-IDVKKGRM--RIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVG--YGDR----AFKSMPGRLFA  343 (447)
Q Consensus       273 i-~~~~~~r~--~~~~~l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVG--yGD~----~p~t~~gr~f~  343 (447)
                      . ......+.  +....+...+.+.+++++++++++ ..++.+..+|+-=+..++++||  +|..    ..-++.+|++.
T Consensus       380 ~~v~~~gr~i~~~~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il  458 (483)
T PRK10750        380 YSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWIL  458 (483)
T ss_pred             eeeeECCEECCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHH
Confidence            1 01111111  111233333334444445555555 5677889999998889999998  4543    34467789999


Q ss_pred             HHHHHHH
Q 013211          344 SIWLLVS  350 (447)
Q Consensus       344 ii~il~G  350 (447)
                      ++.|++|
T Consensus       459 ~~~MllG  465 (483)
T PRK10750        459 IANMLFG  465 (483)
T ss_pred             HHHHHHH
Confidence            9999887

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.88  E-value=0.0032  Score=65.99  Aligned_cols=93  Identities=19%  Similarity=0.255  Sum_probs=68.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCC--------------------hhhHHHhheeeeeeeccceeee
Q 013211          158 GSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHP--------------------VVDALYFCIVTMCTIGYGDITP  217 (447)
Q Consensus       158 ~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s--------------------~~da~yf~~vtltTIGYGDi~P  217 (447)
                      ...++..++..+++++.--||+.|++....--+.+.|.                    |.-++||+..|+||+| .--.|
T Consensus       126 n~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P  204 (536)
T KOG0500|consen  126 NAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPP  204 (536)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCC
Confidence            33555666666677766667776665432211122233                    5679999999999998 34578


Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          218 RTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDL  251 (447)
Q Consensus       218 ~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~  251 (447)
                      .+..--.|.++-.++|+.+|+.+++.+++.+...
T Consensus       205 ~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm  238 (536)
T KOG0500|consen  205 VTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM  238 (536)
T ss_pred             CcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence            8899999999999999999999999999988653

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.72  E-value=0.014  Score=61.42  Aligned_cols=55  Identities=20%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      |.-|+||+..|+||+| --..|.+...-+|.++=.++|++++|.+++.+++.+...
T Consensus       184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm  238 (536)
T KOG0500|consen  184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM  238 (536)
T ss_pred             HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence            3458999999999998 334678888899999999999999999999999887663

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=96.41  E-value=0.0089  Score=61.10  Aligned_cols=92  Identities=16%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             Ch-HHHHHHHHHHHHHHHHHHHHHhhhcccc--cCC---C--------CCCChhhHHHhheeeeeeeccceeeecC--CC
Q 013211          158 GS-QSIVRQAVVLLILYLSLGVTIYWFNRHN--FTA---S--------ETHPVVDALYFCIVTMCTIGYGDITPRT--VP  221 (447)
Q Consensus       158 ~~-~~~v~~~~i~l~l~i~~g~~i~~~~~~~--~~~---~--------~~~s~~da~yf~~vtltTIGYGDi~P~t--~~  221 (447)
                      .| +.++.....+++.|+++|+++|.+...+  ...   .        ...+|..||-|++-|=||||||..++..  |.
T Consensus        61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~  140 (400)
T KOG3827|consen   61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE  140 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence            45 3344455666677788888777654211  111   1        2347999999999999999999887764  45


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          222 TKVFSILFVLVGFGFVDILLTGMVSYVL  249 (447)
Q Consensus       222 gr~f~i~~~l~Gi~l~~~~~~~~~~~l~  249 (447)
                      +-+..++-.++|+.+-+..++.+...+.
T Consensus       141 aI~ll~~Q~I~g~ii~afm~G~i~aKia  168 (400)
T KOG3827|consen  141 AIFLLVLQSILGVIINAFMVGAIFAKIA  168 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6677777888888777776666655543

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=96.27  E-value=0.009  Score=54.27  Aligned_cols=50  Identities=26%  Similarity=0.535  Sum_probs=38.6

Q ss_pred             CChhhHHHhheeeeeeeccceeeec-----CCCCchhhHHHHH-HHHHHHHHHHHH
Q 013211          194 HPVVDALYFCIVTMCTIGYGDITPR-----TVPTKVFSILFVL-VGFGFVDILLTG  243 (447)
Q Consensus       194 ~s~~da~yf~~vtltTIGYGDi~P~-----t~~gr~f~i~~~l-~Gi~l~~~~~~~  243 (447)
                      .+|..|+|+.+.++||.|+||..+.     +..+.++.+.+.+ .++.++.++++.
T Consensus       144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav  199 (200)
T PF00520_consen  144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV  199 (200)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence            5799999999999999999999997     6777777744444 445566665553

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=96.19  E-value=0.013  Score=53.21  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=37.8

Q ss_pred             cchhhHHHHHHhhhhccccCCCccC-----CcchhHHHHHHHHH-HHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFK-----SMPGRLFASIWLLV-STLAVARAFL  359 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~-----t~~gr~f~ii~il~-G~~~va~~~~  359 (447)
                      .++..|+||.+.++||.|+||..+.     +..+.++.+.++++ ++.+++.+++
T Consensus       144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia  198 (200)
T PF00520_consen  144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA  198 (200)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence            4588999999999999999999997     66778887555555 4455555554

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=96.09  E-value=0.009  Score=61.38  Aligned_cols=151  Identities=15%  Similarity=0.125  Sum_probs=64.2

Q ss_pred             ChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCCC-CCC
Q 013211          195 PVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQE--NYLLRTIKGGGHK-ESP  269 (447)
Q Consensus       195 s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~--~~~~r~~~~~~~~-~~~  269 (447)
                      ....+.++...+.+|-||.  |+.--++..+++.++.+++|-.-.+..-+.=...+.-..+  +.+.+...+.+.. .+.
T Consensus       176 ~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~~~~~~~~  255 (354)
T PF02386_consen  176 SKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPGAVSPVRF  255 (354)
T ss_dssp             HHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SSS-----S
T ss_pred             HHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCCCccceee
Confidence            3566788888899999996  4444455667777777777644332211111111111111  1111222211110 000


Q ss_pred             CcceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhccc-hhhHHHHHHhhhhcccc--CCCcc-CCcc---hhHH
Q 013211          270 GSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLG-WLDSFYLSVMSVTTVGY--GDRAF-KSMP---GRLF  342 (447)
Q Consensus       270 ~~~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e~~s-~~ds~Yfs~iTlTTVGy--GD~~p-~t~~---gr~f  342 (447)
                      .+..+     ..+.-.+....+.+.++.+++++..+...+... +.|+++=++..++|||.  |...| -+..   +|++
T Consensus       256 ~~r~i-----~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~v  330 (354)
T PF02386_consen  256 NGRRI-----SEQTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLV  330 (354)
T ss_dssp             SS--------TTSHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHH
T ss_pred             cceee-----chhhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHH
Confidence            00000     001111222222233333445555665555544 69999999999999994  55333 2334   8888


Q ss_pred             HHHHHHHH
Q 013211          343 ASIWLLVS  350 (447)
Q Consensus       343 ~ii~il~G  350 (447)
                      .++.|++|
T Consensus       331 li~~M~~G  338 (354)
T PF02386_consen  331 LIFLMLLG  338 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88888876

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=95.91  E-value=0.032  Score=58.14  Aligned_cols=40  Identities=15%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             chhhHHHHHHhhhhccccC--CCccCCcchhHHHHHHHHHHH
Q 013211          312 GWLDSFYLSVMSVTTVGYG--DRAFKSMPGRLFASIWLLVST  351 (447)
Q Consensus       312 s~~ds~Yfs~iTlTTVGyG--D~~p~t~~gr~f~ii~il~G~  351 (447)
                      ...++.++...+++|.||.  |..--++.++++.++.|++|-
T Consensus       231 ~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg  272 (390)
T TIGR00933       231 ALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGG  272 (390)
T ss_pred             HHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcC
Confidence            3788999999999999975  444445567888888888863

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>PRK05482 potassium-transporting ATPase subunit A; Provisional

Probab=95.90  E-value=0.13  Score=55.74  Aligned_cols=42  Identities=14%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             cchhhHHHHHHhhhhccc--cCCCccCCcchhHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVG--YGDRAFKSMPGRLFASIWLLVSTL  352 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVG--yGD~~p~t~~gr~f~ii~il~G~~  352 (447)
                      +++.|.+|=......|+|  +|+..+.++.+++..++.|++|=.
T Consensus       450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~  493 (559)
T PRK05482        450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRF  493 (559)
T ss_pred             CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence            689999999999999999  677889999999999999998733

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=95.61  E-value=0.21  Score=53.86  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhcccc--CCCccCCcch------hHHHHHHHHHH
Q 013211          292 GVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGY--GDRAFKSMPG------RLFASIWLLVS  350 (447)
Q Consensus       292 ~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGy--GD~~p~t~~g------r~f~ii~il~G  350 (447)
                      .+.++.++++++.....+..++.|+++=++.+..|||.  |-..+.+..+      ++..++.|++|
T Consensus       404 ~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G  470 (499)
T COG0168         404 FLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG  470 (499)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence            33334445566655555544899999999999999995  4444334445      88888888886

>PRK10750 potassium transporter; Provisional

Probab=95.26  E-value=0.17  Score=54.32  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=36.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccc
Q 013211          156 QFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYG  213 (447)
Q Consensus       156 ~~~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYG  213 (447)
                      ..+.....+.+..+.+.+.+++++.+++.        .-+++||+..++.+++|-||.
T Consensus       175 ~p~i~~ta~~l~~iY~~lT~~~~~ll~~~--------Gm~~fdAi~ha~saisTgGFs  224 (483)
T PRK10750        175 RPRIAETAKTLWLIYVLLTVACALALWFA--------GMDAFDAIGHSFSTIAIGGFS  224 (483)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHhccCcC
Confidence            34456666666666666667777777654        256999999999999999984

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=95.05  E-value=0.024  Score=49.91  Aligned_cols=58  Identities=10%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             CChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          194 HPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQ  252 (447)
Q Consensus       194 ~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~  252 (447)
                      .++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+.+.+.+.+.+....
T Consensus        43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~  100 (148)
T PF00060_consen   43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK  100 (148)
T ss_dssp             HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            4578899999888876 667899999999999999999999999999999999886443

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=95.04  E-value=0.035  Score=42.22  Aligned_cols=58  Identities=22%  Similarity=0.403  Sum_probs=43.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHH-hhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+....-.......++.+.+..++ |++.|.|++|.|+.+|...
T Consensus         6 F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~   64 (66)
T PF13499_consen    6 FKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN   64 (66)
T ss_dssp             HHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred             HHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence            445788999999998876653333344446777655444 9999999999999999864

...

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=94.61  E-value=0.11  Score=53.45  Aligned_cols=50  Identities=18%  Similarity=0.262  Sum_probs=38.2

Q ss_pred             chhhHHHHHHhhhhccccCCCccCCc--chhHHHHHHHHHHHHHHHHHHHHH
Q 013211          312 GWLDSFYLSVMSVTTVGYGDRAFKSM--PGRLFASIWLLVSTLAVARAFLYL  361 (447)
Q Consensus       312 s~~ds~Yfs~iTlTTVGyGD~~p~t~--~gr~f~ii~il~G~~~va~~~~~l  361 (447)
                      +|..||-|++-|=||||||-..+...  .+.+..++-+++|+.+=+.+++.+
T Consensus       112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i  163 (400)
T KOG3827|consen  112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAI  163 (400)
T ss_pred             chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48889999999999999999988654  456667777777877766555443

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=94.58  E-value=0.02  Score=35.80  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=19.9

Q ss_pred             HHHHhhhccCCCCCccChhhhhh
Q 013211          422 ICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       422 i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      |.+.|++.|.|++|+|+..|+..
T Consensus         1 l~~~F~~~D~d~DG~is~~E~~~   23 (25)
T PF13202_consen    1 LKDAFQQFDTDGDGKISFEEFQR   23 (25)
T ss_dssp             HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred             CHHHHHHHcCCCCCcCCHHHHHH
Confidence            45789999999999999999753

...

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=94.24  E-value=0.066  Score=48.09  Aligned_cols=57  Identities=18%  Similarity=0.254  Sum_probs=44.9

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHH--HHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEK--DVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~e--dv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||....-......+.+  ...++++.|+..|.|++|.||..||..
T Consensus        51 ~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~  109 (151)
T KOG0027|consen   51 KEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKK  109 (151)
T ss_pred             HHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHH
Confidence            345677889999999988765555544443  467888999999999999999999863

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=93.89  E-value=0.037  Score=35.93  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.+.|++.|.|++|+|+..|+..
T Consensus         1 E~~~~F~~~D~d~dG~I~~~Ef~~   24 (29)
T PF00036_consen    1 ELKEAFREFDKDGDGKIDFEEFKE   24 (29)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCCHHHHHH
Confidence            356789999999999999999865

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.75  E-value=0.06  Score=57.88  Aligned_cols=58  Identities=28%  Similarity=0.414  Sum_probs=49.6

Q ss_pred             CCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          192 ETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD  250 (447)
Q Consensus       192 ~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~  250 (447)
                      ++..|+.++||++-|++||| |.-.|.+...-+|-.+=.++|+.+|++.++.+-+.+..
T Consensus       400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a  457 (815)
T KOG0499|consen  400 EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA  457 (815)
T ss_pred             CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45679999999999999999 77788877777777777788999999999999888764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.22  E-value=13  Score=41.87  Aligned_cols=54  Identities=15%  Similarity=0.220  Sum_probs=33.3

Q ss_pred             hhhHHHHHHhhh--hccccCCCccCCcc-----hhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 013211          313 WLDSFYLSVMSV--TTVGYGDRAFKSMP-----GRLFASIWLLV-STLAVARAFLYLAEARV  366 (447)
Q Consensus       313 ~~ds~Yfs~iTl--TTVGyGD~~p~t~~-----gr~f~ii~il~-G~~~va~~~~~l~~~~~  366 (447)
                      ..|++.-++.|+  .||||||.......     +++..++|+++ .+.++-+.++..++-+.
T Consensus       587 ~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~  648 (782)
T KOG3676|consen  587 PYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYE  648 (782)
T ss_pred             hhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            567777666666  79999998765433     55555555444 45555555555554443

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=91.48  E-value=0.11  Score=33.79  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.+.|+..|.|++|+|+.+|+..
T Consensus         1 ~l~~~F~~~D~d~dG~I~~~el~~   24 (31)
T PF13405_consen    1 RLREAFKMFDKDGDGFIDFEELRA   24 (31)
T ss_dssp             HHHHHHHHH-TTSSSEEEHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCcHHHHHH
Confidence            356789999999999999999864

...

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=91.25  E-value=0.31  Score=35.52  Aligned_cols=46  Identities=24%  Similarity=0.435  Sum_probs=34.3

Q ss_pred             CCCcChHHHHHHHHHHh-CC-CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          395 NGFVSKSEYVIYKLKEM-GK-ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       395 ~g~vs~~ef~~~~L~~~-~k-i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.++..++.... ..+ -+ ++++++.   .-|...|.|++|.|+..|...
T Consensus         2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~---~l~~~~D~~~~G~I~~~EF~~   49 (54)
T PF13833_consen    2 DGKITREEFRRAL-SKLGIKDLSEEEVD---RLFREFDTDGDGYISFDEFIS   49 (54)
T ss_dssp             SSEEEHHHHHHHH-HHTTSSSSCHHHHH---HHHHHHTTSSSSSEEHHHHHH
T ss_pred             cCEECHHHHHHHH-HHhCCCCCCHHHHH---HHHHhcccCCCCCCCHHHHHH
Confidence            5667777766654 443 35 7888866   667788999999999999864

...

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=90.64  E-value=0.38  Score=42.15  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          312 GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       312 s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      ++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+...+.++...+..
T Consensus        44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~   99 (148)
T PF00060_consen   44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP   99 (148)
T ss_dssp             HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            367788888777766 66778999999999999999999999999999998776654

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=90.12  E-value=0.41  Score=45.18  Aligned_cols=59  Identities=25%  Similarity=0.452  Sum_probs=40.7

Q ss_pred             HhhhhccCCCCcChHHHHH---HHHHHhCC----CCHHHHHHH-HHHhhhccCCCCCccChhhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVI---YKLKEMGK----ISEKDVMQI-CHKFDRLDTGNCGKITLADLMEA  445 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~---~~L~~~~k----i~~edv~~i-~~~F~~ld~~~~G~l~~~dl~~~  445 (447)
                      +.--|.+++|++++.|++.   ..+..++.    -.++...+. .+-|.+.|.|++|.||.+|..++
T Consensus       106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~  172 (193)
T KOG0044|consen  106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG  172 (193)
T ss_pred             heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence            3446889999999888432   23444453    233333333 44599999999999999998875

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=88.16  E-value=1.1  Score=36.66  Aligned_cols=46  Identities=15%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             CCCcChHHHHHHHHH---HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          395 NGFVSKSEYVIYKLK---EMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       395 ~g~vs~~ef~~~~L~---~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +|.++..|+....-+   .-.+.+++++.++   |+++|.|++|+|+..|.+
T Consensus        26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m---~~~~D~d~dG~Idf~EFv   74 (88)
T cd05029          26 KNTLSKKELKELIQKELTIGSKLQDAEIAKL---MEDLDRNKDQEVNFQEYV   74 (88)
T ss_pred             CCEECHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHhcCCCCCCCcHHHHH
Confidence            678888886554322   2456888888866   667799999999999875

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>smart00027 EH Eps15 homology domain

Probab=88.11  E-value=0.5  Score=39.01  Aligned_cols=31  Identities=29%  Similarity=0.296  Sum_probs=22.5

Q ss_pred             CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          414 ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++++++..+.+.|+.+|.|++|.|+..|+.+
T Consensus         4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~   34 (96)
T smart00027        4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKP   34 (96)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            4667777777777777777777777777653

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>TIGR00934 2a38euk potassium uptake protein, Trk family

Probab=87.90  E-value=1.4  Score=49.73  Aligned_cols=173  Identities=14%  Similarity=0.141  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccCCCCC----CChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHH
Q 013211          166 AVVLLILYLSLGVTIYWFNRHNFTASET----HPVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDI  239 (447)
Q Consensus       166 ~~i~l~l~i~~g~~i~~~~~~~~~~~~~----~s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~  239 (447)
                      +++..++.+++|.+.+++.+.+....+.    ..+++|++-++.+ =|.|+-  |+.-.+++..++.++.+++|..=++.
T Consensus       587 ll~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~Ptag  665 (800)
T TIGR00934       587 LFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAI  665 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCccc
Confidence            4445555666777766665432111111    2367787777765 667775  44555677788888887776443222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc---------
Q 013211          240 LLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEK---------  310 (447)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e~---------  310 (447)
                      .+-. ++...+.... ++ ..+ .+...      ... .++.-....+.-.+.+.++++++|.++....|+         
T Consensus       666 gIK~-TTvyee~sLg-i~-~~~-g~~~~------~~~-~~rsi~~~~irrqLs~dlw~I~l~~flI~I~E~~~l~~~~~~  734 (800)
T TIGR00934       666 SIRR-TNVYEEQSLG-LY-NEE-NEEHE------GES-STKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRKIQDPDPP  734 (800)
T ss_pred             eeec-eeeeheehee-ee-ecc-CCccc------ccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence            1110 0000000000 00 001 11100      000 001001111222233335566677777777774         


Q ss_pred             -cchhhHHHHHHhhhhccccCCCcc---------CCcchhHHHHHHHHHH
Q 013211          311 -LGWLDSFYLSVMSVTTVGYGDRAF---------KSMPGRLFASIWLLVS  350 (447)
Q Consensus       311 -~s~~ds~Yfs~iTlTTVGyGD~~p---------~t~~gr~f~ii~il~G  350 (447)
                       .++++-++=++....|||+.--.|         -+..||++.++.|+.|
T Consensus       735 ~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G  784 (800)
T TIGR00934       735 NFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG  784 (800)
T ss_pred             cccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence             367888888888999999533322         2557888888888775

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.

>TIGR00934 2a38euk potassium uptake protein, Trk family

Probab=86.88  E-value=4  Score=46.19  Aligned_cols=62  Identities=18%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHhHh-------ccc----hhhHHHHHHhhhhccccCCC--ccCCcchhHHHHHHHHHHHHH
Q 013211          291 LGVVVLCIGIGVGVMHFVE-------KLG----WLDSFYLSVMSVTTVGYGDR--AFKSMPGRLFASIWLLVSTLA  353 (447)
Q Consensus       291 l~i~~~~i~~ga~~~~~~e-------~~s----~~ds~Yfs~iTlTTVGyGD~--~p~t~~gr~f~ii~il~G~~~  353 (447)
                      +..+++++++|.+++...|       +.+    +++|++-++.+ =|-||.-+  .--++...++.++.|++|..=
T Consensus       588 l~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P  662 (800)
T TIGR00934       588 FFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP  662 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence            3444445567777777776       122    56677766553 66676532  223456677888888887544

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=86.69  E-value=0.4  Score=36.29  Aligned_cols=24  Identities=21%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.+.|+++|.|++|.|+..||..
T Consensus         1 ~l~~~F~~~D~d~~G~i~~~el~~   24 (66)
T PF13499_consen    1 RLKEAFKKFDKDGDGYISKEELRR   24 (66)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred             CHHHHHHHHcCCccCCCCHHHHHH
Confidence            467899999999999999999874

...

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=86.57  E-value=8.4  Score=43.96  Aligned_cols=54  Identities=13%  Similarity=0.237  Sum_probs=40.9

Q ss_pred             cchhhHHHHHHhhhhccccCCCcc----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAF----KSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p----~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      .++..|+|.+-..+    |+.-+|    ....+|+.+.+|.+++++++|..+++++..++..
T Consensus       608 FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE  665 (1258)
T KOG1053|consen  608 FTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE  665 (1258)
T ss_pred             eehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45777888554333    556555    4557899999999999999999999999766643

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=86.40  E-value=1.6  Score=35.97  Aligned_cols=53  Identities=13%  Similarity=0.271  Sum_probs=37.9

Q ss_pred             hhhhc-cCCCCcChHHHHHHHHHHhC-CCCH-HHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          388 LAADI-DNNGFVSKSEYVIYKLKEMG-KISE-KDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       388 ~~~di-d~~g~vs~~ef~~~~L~~~~-ki~~-edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ...|. +.+|.++..|+....-.+.+ ++++ +++.   +-++.+|.|++|+|+.+|.+
T Consensus        15 ~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~---~mi~~~D~d~DG~I~F~EF~   70 (89)
T cd05022          15 HKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLE---EKMKNLDVNQDSKLSFEEFW   70 (89)
T ss_pred             HHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHH---HHHHHhCCCCCCCCcHHHHH
Confidence            34456 78899998886554333355 3665 5555   55788999999999999875

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=85.88  E-value=0.65  Score=50.45  Aligned_cols=79  Identities=15%  Similarity=0.392  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhhhcccc----c-------CCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHH
Q 013211          171 ILYLSLGVTIYWFNRHN----F-------TASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDI  239 (447)
Q Consensus       171 ~l~i~~g~~i~~~~~~~----~-------~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~  239 (447)
                      +..+++|..+|.+.+..    |       ...+..++..|+||+...+..-|-|.-.|.+--.|++.++|+=+.+++++.
T Consensus       578 ~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVAS  657 (993)
T KOG4440|consen  578 LSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVAS  657 (993)
T ss_pred             HHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehh
Confidence            34455666666665411    1       112346799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013211          240 LLTGMVSYVL  249 (447)
Q Consensus       240 ~~~~~~~~l~  249 (447)
                      ..+++..+++
T Consensus       658 YTANLAAFLV  667 (993)
T KOG4440|consen  658 YTANLAAFLV  667 (993)
T ss_pred             hhhhhhhhee
Confidence            9999998875

>PTZ00183 centrin; Provisional

Probab=85.87  E-value=2  Score=37.82  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=41.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+..........++++++..+   |..+|.+++|.|+.+|+..
T Consensus        96 F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~---~~~~d~~~~g~i~~~ef~~  150 (158)
T PTZ00183         96 FRLFDDDKTGKISLKNLKRVAKELGETITDEELQEM---IDEADRNGDGEISEEEFYR  150 (158)
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            445678889999988877665544556888877755   5667889999999998754

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=85.70  E-value=1.5  Score=40.18  Aligned_cols=54  Identities=24%  Similarity=0.431  Sum_probs=41.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +..-|.|++|+++..|... .|+.+ .+.+++++.   +-++..|.|++|+|+..|..+
T Consensus        98 F~~fD~d~dG~Is~~eL~~-vl~~lge~~~deev~---~ll~~~d~d~dG~i~~~eF~~  152 (160)
T COG5126          98 FKLFDKDHDGYISIGELRR-VLKSLGERLSDEEVE---KLLKEYDEDGDGEIDYEEFKK  152 (160)
T ss_pred             HHHhCCCCCceecHHHHHH-HHHhhcccCCHHHHH---HHHHhcCCCCCceEeHHHHHH
Confidence            4456899999999888544 45554 678888888   456666889999999998865

>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]

Probab=85.47  E-value=1.9  Score=38.82  Aligned_cols=54  Identities=22%  Similarity=0.439  Sum_probs=39.9

Q ss_pred             hhccCCCCcChHHHHH-HHHHHhCCCCHHHHHHHHHH-hhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVI-YKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~-~~L~~~~ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~  443 (447)
                      -|.+.|+++...+... ..-.-.+..+++++..|+++ .++-|.|++|+|+.+|..
T Consensus       117 YDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe  172 (189)
T KOG0038|consen  117 YDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE  172 (189)
T ss_pred             eecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Confidence            3667888876554211 12233477899999999988 899999999999998863

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

Probab=85.44  E-value=2.8  Score=29.65  Aligned_cols=52  Identities=27%  Similarity=0.430  Sum_probs=36.7

Q ss_pred             hhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..++... +... ...+++.+.   .-|++.|.+++|.|+..++..
T Consensus         8 ~~d~~~~g~l~~~e~~~~-l~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ef~~   60 (63)
T cd00051           8 LFDKDGDGTISADELKAA-LKSLGEGLSEEEID---EMIREVDKDGDGKIDFEEFLE   60 (63)
T ss_pred             HhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCeEeHHHHHH
Confidence            456778888888886554 4444 455656666   457777889999999988753

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.

>PLN02964 phosphatidylserine decarboxylase

Probab=85.28  E-value=1.4  Score=48.86  Aligned_cols=51  Identities=24%  Similarity=0.322  Sum_probs=39.2

Q ss_pred             hhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.+.+|.++..||....- .++ ..++++   +.+.|+..|.|++|.|+.+||.+
T Consensus       188 ~D~DgdG~IdfdEFl~lL~-~lg~~~seEE---L~eaFk~fDkDgdG~Is~dEL~~  239 (644)
T PLN02964        188 VDYDEDGQLSFSEFSDLIK-AFGNLVAANK---KEELFKAADLNGDGVVTIDELAA  239 (644)
T ss_pred             hCCCCCCeEcHHHHHHHHH-HhccCCCHHH---HHHHHHHhCCCCCCcCCHHHHHH
Confidence            5778899999999876543 444 345554   55889999999999999999864

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=85.19  E-value=2.8  Score=34.57  Aligned_cols=50  Identities=16%  Similarity=0.269  Sum_probs=33.1

Q ss_pred             hccCCCC-cChHHHHHHHHHH-----hCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDNNGF-VSKSEYVIYKLKE-----MGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~~g~-vs~~ef~~~~L~~-----~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +.|.+|. ++..|+....-.+     .++.+++++.++   ++++|.|++|+|+..|..
T Consensus        21 d~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i---~~elD~n~dG~Idf~EF~   76 (93)
T cd05026          21 GKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI---MNDLDSNKDNEVDFNEFV   76 (93)
T ss_pred             ccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH---HHHhCCCCCCCCCHHHHH
Confidence            3677874 8888865432222     234466666654   555688999999999875

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=85.14  E-value=13  Score=40.22  Aligned_cols=46  Identities=13%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccc
Q 013211          160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYG  213 (447)
Q Consensus       160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYG  213 (447)
                      ...++.+..+.+++..++++.|+..        .-++.||++.++.+++|-||-
T Consensus       171 ~~~~~~~~~iy~~~t~l~~~~~~~~--------gm~~~dAi~hs~Sa~~ngGFS  216 (499)
T COG0168         171 KNTAKTLWLIYLLLTILLALAFILA--------GMPLFDAIFHSMSAFNNGGFS  216 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHhhcCCCC
Confidence            4444444555555555555555543        246889999999999999985

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=84.96  E-value=2.9  Score=31.19  Aligned_cols=52  Identities=27%  Similarity=0.397  Sum_probs=37.3

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+... +...| .+++++..+   |+..|.+++|.|+..|.+.
T Consensus         6 ~~~D~~~~G~i~~~el~~~-l~~~g-~~~~~~~~i---~~~~d~~~~g~i~~~ef~~   57 (67)
T cd00052           6 RSLDPDGDGLISGDEARPF-LGKSG-LPRSVLAQI---WDLADTDKDGKLDKEEFAI   57 (67)
T ss_pred             HHhCCCCCCcCcHHHHHHH-HHHcC-CCHHHHHHH---HHHhcCCCCCcCCHHHHHH
Confidence            3457788899888775443 44555 477776655   6677889999999998764

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>PRK12438 hypothetical protein; Provisional

Probab=84.70  E-value=52  Score=38.53  Aligned_cols=31  Identities=19%  Similarity=0.166  Sum_probs=17.4

Q ss_pred             hhccccCCCccCCcchhHHHHHHHHHHHHHH
Q 013211          324 VTTVGYGDRAFKSMPGRLFASIWLLVSTLAV  354 (447)
Q Consensus       324 lTTVGyGD~~p~t~~gr~f~ii~il~G~~~v  354 (447)
                      ++.-||-|+...=+.-.+++++-++++++++
T Consensus       245 ~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f~  275 (991)
T PRK12438        245 FTGAGYTDINAVLPAKLILVAIAVLCAVAFF  275 (991)
T ss_pred             EecCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4566788877644444455555555554443

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B

Probab=84.61  E-value=3.1  Score=34.10  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             ccCCC-CcChHHHHHHHHHH-----h-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNG-FVSKSEYVIYKLKE-----M-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g-~vs~~ef~~~~L~~-----~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+.+| .++..|+... |..     . ...+++++.++.   +++|.|++|+|+.++.+.
T Consensus        20 ~dgdG~~I~~~eL~~l-l~~~~~~~lg~~~~~~~v~~~i---~~~D~n~dG~v~f~eF~~   75 (88)
T cd05027          20 REGDKHKLKKSELKEL-INNELSHFLEEIKEQEVVDKVM---ETLDSDGDGECDFQEFMA   75 (88)
T ss_pred             cCCCcCEECHHHHHHH-HHHHhHHHhcCCCCHHHHHHHH---HHhCCCCCCcCcHHHHHH
Confidence            56788 4888876544 344     3 446777788554   466999999999998763

S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i

>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=84.03  E-value=2  Score=47.78  Aligned_cols=83  Identities=12%  Similarity=0.317  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcccc-cCC------CCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHH
Q 013211          166 AVVLLILYLSLGVTIYWFNRHN-FTA------SETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVD  238 (447)
Q Consensus       166 ~~i~l~l~i~~g~~i~~~~~~~-~~~------~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~  238 (447)
                      .+.++++++++|+++|.+++.. ...      ...|+...++|+++.++..-|-+ ..|.+..+|++..+|.++++.+..
T Consensus       345 W~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~s  423 (656)
T KOG1052|consen  345 WLLILASLLLVGLLLWILERLSPYELPPRQIVTSLFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILIS  423 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCccccceeEeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHH
Confidence            4444555666777777766511 111      22456666778887777777655 899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 013211          239 ILLTGMVSYVL  249 (447)
Q Consensus       239 ~~~~~~~~~l~  249 (447)
                      ...+.+.+.+.
T Consensus       424 sYTa~L~a~Lt  434 (656)
T KOG1052|consen  424 SYTANLTAFLT  434 (656)
T ss_pred             HHHHHHHHHhc
Confidence            99998888774

>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]

Probab=83.82  E-value=2.3  Score=39.94  Aligned_cols=53  Identities=34%  Similarity=0.605  Sum_probs=37.7

Q ss_pred             hhccCCCCcChHHHHHHHHHHh-C-CC--CHHHHHHHHHH-hhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEM-G-KI--SEKDVMQICHK-FDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~-~-ki--~~edv~~i~~~-F~~ld~~~~G~l~~~dl~  443 (447)
                      -|.+.+|+++..|...- +..+ + ..  +++.+.+|.++ |.+-|.|++|+|+.+|-.
T Consensus       113 YD~~~~G~I~reel~~i-v~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~  170 (187)
T KOG0034|consen  113 YDLDGDGFISREELKQI-LRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFC  170 (187)
T ss_pred             hcCCCCCcCcHHHHHHH-HHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            47788999887774332 2222 2 23  36777777766 999999999999998753

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=83.69  E-value=2.4  Score=43.48  Aligned_cols=39  Identities=21%  Similarity=0.167  Sum_probs=20.6

Q ss_pred             hhhHHHHHHhhhhccccCCCcc--CCcchhHHHHHHHHHHH
Q 013211          313 WLDSFYLSVMSVTTVGYGDRAF--KSMPGRLFASIWLLVST  351 (447)
Q Consensus       313 ~~ds~Yfs~iTlTTVGyGD~~p--~t~~gr~f~ii~il~G~  351 (447)
                      ..++.++...+.+|-||.-...  -++..+++.++.|++|-
T Consensus       177 ~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg  217 (354)
T PF02386_consen  177 KRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGG  217 (354)
T ss_dssp             HHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S
T ss_pred             HHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcC
Confidence            4557778888999999864433  34455667777777653

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11

Probab=82.91  E-value=4  Score=33.47  Aligned_cols=51  Identities=18%  Similarity=0.388  Sum_probs=34.6

Q ss_pred             hhccCCC-CcChHHHHHHHHHHh-----CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNG-FVSKSEYVIYKLKEM-----GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g-~vs~~ef~~~~L~~~-----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .+.++++ .+++.|+....-.+.     .+.+++++.++   +.++|.|++|+|+..+.+
T Consensus        19 ~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l---l~~~D~d~DG~I~f~EF~   75 (89)
T cd05023          19 AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM---MKKLDLNSDGQLDFQEFL   75 (89)
T ss_pred             hccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH---HHHcCCCCCCcCcHHHHH
Confidence            3455554 788888655533331     35566777754   567789999999999875

S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S

>PTZ00184 calmodulin; Provisional

Probab=80.98  E-value=3.8  Score=35.34  Aligned_cols=55  Identities=24%  Similarity=0.386  Sum_probs=39.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..++........-.++++++..+   |++.|.+++|+|+..|...
T Consensus        90 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~  144 (149)
T PTZ00184         90 FKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEM---IREADVDGDGQINYEEFVK  144 (149)
T ss_pred             HHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHH---HHhcCCCCCCcCcHHHHHH
Confidence            444577888998888875543332234677777755   6677889999999988753

>PTZ00183 centrin; Provisional

Probab=80.75  E-value=3.5  Score=36.18  Aligned_cols=52  Identities=25%  Similarity=0.366  Sum_probs=37.7

Q ss_pred             hhccCCCCcChHHHHHHHHHH-hCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKE-MGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~-~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.+.+|.++..||+...... ..+..++   .+.+.|..+|.+++|.|+..|+..
T Consensus        62 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~---~l~~~F~~~D~~~~G~i~~~e~~~  114 (158)
T PTZ00183         62 VDKDGSGKIDFEEFLDIMTKKLGERDPRE---EILKAFRLFDDDKTGKISLKNLKR  114 (158)
T ss_pred             hCCCCCCcEeHHHHHHHHHHHhcCCCcHH---HHHHHHHHhCCCCCCcCcHHHHHH
Confidence            466788989999987653332 2333333   456779999999999999999863

>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP)

Probab=80.71  E-value=2.7  Score=36.38  Aligned_cols=50  Identities=22%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|..-..   ++ ..++-+   .+-|++.|.|++|.||.++..
T Consensus        54 F~~lD~d~DG~Ls~~EL~~~~---l~-~~e~~~---~~f~~~~D~n~Dg~IS~~Ef~  103 (116)
T cd00252          54 FNQLDGNYDGKLSHHELAPIR---LD-PNEHCI---KPFFESCDLDKDGSISLDEWC  103 (116)
T ss_pred             HHHHCCCCCCcCCHHHHHHHH---cc-chHHHH---HHHHHHHCCCCCCCCCHHHHH
Confidence            456788999999998855432   11 112333   355778899999999998853

SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=80.51  E-value=4.4  Score=36.18  Aligned_cols=54  Identities=22%  Similarity=0.370  Sum_probs=43.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|+++..|+.......-.+.+.+++.   .-+++.|.|++|.++..+.+
T Consensus        91 F~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~---~mi~~~d~d~dg~i~f~ef~  144 (151)
T KOG0027|consen   91 FRVFDKDGDGFISASELKKVLTSLGEKLTDEECK---EMIREVDVDGDGKVNFEEFV  144 (151)
T ss_pred             HHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHH---HHHHhcCCCCCCeEeHHHHH
Confidence            4557889999999999888877778888877777   55666788999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
3tcu_A	97	Crystal Structure Of Nak2k Channel D68e Mutant Leng		4e-07
3t1c_A	97	Crystal Structure Of Nak Channel D66y Mutant Length		4e-07
3ouf_A	97	Structure Of A K+ Selective Nak Mutant Length = 97		7e-07
3tet_A	97	Crystal Structure Of Nak2k Channel Y66f Mutant Leng		2e-06
3t4d_A	97	Crystal Structure Of Nak2k Channel Y55f Mutant Leng		2e-06
3t4z_A	97	Crystal Structure Of Nak2k Channel Y55w Mutant Leng		2e-06
2q69_A	114	Crystal Structure Of Nak Channel D66n Mutant Length		4e-06
2q67_A	114	Crystal Structure Of Nak Channel D66a Mutant Length		4e-06
2q6a_A	114	Crystal Structure Of Nak Channel D66e Mutant Length		4e-06
2ahy_A	110	Na+ Complex Of The Nak Channel Length = 110		5e-06
3e83_A	96	Crystal Structure Of The The Open Nak Channel Pore		6e-06
3vou_A	148	The Crystal Structure Of Nak-Navsulp Chimera Channe		1e-05
3t2m_A	97	Crystal Structure Of Nak Channel N68d Mutant Length		1e-05
2q68_A	114	Crystal Structure Of Nak Channel D66a, S70e Double		4e-05
1lnq_A	336	Crystal Structure Of Mthk At 3.3 A Length = 336		6e-05
2a0l_A	241	Crystal Structure Of Kvap-33h1 Fv Complex Length =		9e-05
3ldd_A	82	High Resolution Open Mthk Pore Structure Crystalliz		2e-04
1orq_C	223	X-Ray Structure Of A Voltage-Dependent Potassium Ch		2e-04
3rbz_A	340	Mthk Channel, Ca2+-Bound Length = 340		2e-04
3lnm_B	514	F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan		2e-04
2r9r_B	514	Shaker Family Voltage Dependent Potassium Channel (		2e-04
3lut_B	499	A Structural Model For The Full-Length Shaker Potas		2e-04
2a79_B	499	Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu		2e-04
4h33_A	137	Crystal Structure Of A Voltage-gated K+ Channel Por		3e-04
4hyo_A	91	Crystal Structure Of Mthk Pore Length = 91		5e-04
3r65_A	82	Mthk Channel Pore E92q Mutant Length = 82		7e-04
3ldc_A	82	High Resolution Open Mthk Pore Structure Crystalliz		8e-04

>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant Length = 97

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           VL IL L  G   Y       +  E    +DALYF +VT+ T+GYG+ +P+T   K+F+I
Sbjct: 12  VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTI 64
Query: 228 LFVLVGFGFV 237
           L++ +G G V
Sbjct: 65  LYIFIGIGLV 74

>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant Length = 97

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           VL IL L  G   Y       +  E    +DALYF +VT+ T+GYG+ +P+T   K+F+I
Sbjct: 12  VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTI 64
Query: 228 LFVLVGFGFV 237
           L++ +G G V
Sbjct: 65  LYIFIGIGLV 74

>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
           +DALYF +VT+ T+GYGD +P+T   K+F+IL++ +G G V
Sbjct: 34  IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74

>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant Length = 97

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
           +DALYF +VT+ T+G+GD +P+T   K+F+IL++ +G G V
Sbjct: 34  IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLV 74

>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant Length = 97

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
           +DAL+F +VT+ T+GYGD +P+T   K+F+IL++ +G G V
Sbjct: 34  IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74

>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant Length = 97

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
           +DAL+F +VT+ T+GYGD +P+T   K+F+IL++ +G G V
Sbjct: 34  IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74

>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant Length = 114

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           VL IL L  G   Y       +  E    +DALYF +VT+ T+G G+ +P+T   K+F+I
Sbjct: 29  VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
           L++ +G G V
Sbjct: 82  LYIFIGIGLV 91

>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant Length = 114

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           VL IL L  G   Y       +  E    +DALYF +VT+ T+G G+ +P+T   K+F+I
Sbjct: 29  VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
           L++ +G G V
Sbjct: 82  LYIFIGIGLV 91

>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant Length = 114

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           VL IL L  G   Y       +  E    +DALYF +VT+ T+G G+ +P+T   K+F+I
Sbjct: 29  VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
           L++ +G G V
Sbjct: 82  LYIFIGIGLV 91

>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           VL IL L  G   Y       +  E    +DALYF +VT+ T+G G+ +P+T   K+F+I
Sbjct: 29  VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
           L++ +G G V
Sbjct: 82  LYIFIGIGLV 91

>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
           VL IL L  G   Y       +  E    +DALYF +VT+ T+G G+ +P+T   K+F+I
Sbjct: 11  VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTI 63
Query: 228 LFVLVGFGFV 237
           L++ +G G V
Sbjct: 64  LYIFIGIGLV 73

>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel Length = 148

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
           +DALYF +VT+ T+G G+ +P+T   KVF+IL++ +G G V
Sbjct: 54  LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLV 94

>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant Length = 97

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
           +DALYF +VT+ T+G GD +P+T   K+F+IL++ +G G V
Sbjct: 34  IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLV 74

>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants Length = 114

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
           +DALYF +VT+ T+G G+  P+T   K+F+IL++ +G G V
Sbjct: 51  IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLV 91

>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A Length = 336

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
           IL L L V IY     +F   E+  V  +LY+  VT+ T+GYGD +P T     F++  +
Sbjct: 23  ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLI 80
Query: 231 LVGFGFVDILLTGMVSYVLDLQENYLLRTI 260
           ++G G   + +  ++ ++++ ++  L+  I
Sbjct: 81  VLGIGTFAVAVERLLEFLINREQMKLMGLI 110

>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
           AV+L +LY +  + I  +   N   S    V DAL++ +VT  T+GYGD+ P T   KV 
Sbjct: 151 AVMLTVLYGAFAIYIVEYPDPN---SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVI 207
Query: 226 SILFVLVGFGFVDILLTGMVS 246
            I  +L G   +  LL G VS
Sbjct: 208 GIAVMLTGISALT-LLIGTVS 227

>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+ Length = 82

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
           IL L L V IY     +F   E+  V  +LY+  VT+ T+GYGD +PRT     F+   +
Sbjct: 6   ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPRTPLGMYFTCTLI 63
Query: 231 LVGFGFVDILLTGMVSYVL 249
           ++G G   + +  ++ +++
Sbjct: 64  VLGIGTFAVAVERLLEFLI 82

>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
           AV+L +LY +  + I  +   N   S    V DAL++ +VT  T+GYGD+ P T   KV 
Sbjct: 139 AVMLTVLYGAFAIYIVEYPDPN---SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVI 195
Query: 226 SILFVLVGFGFVDILLTGMVS 246
            I  +L G   +  LL G VS
Sbjct: 196 GIAVMLTGISALT-LLIGTVS 215

>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
           IL L L V IY     +F   E+  V  +LY+  VT+ T+GYGD +P T     F++  +
Sbjct: 23  ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLI 80
Query: 231 LVGFGFVDILLTGMVSYVLDLQENYLL 257
           ++G     + +  +++++++ ++  L+
Sbjct: 81  VLGIATFAVAVARLLTFLINREQMKLI 107

>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
           LLI +L +GV ++    +F   +   S+   + DA ++ +V+M T+GYGD+ P T+  K+
Sbjct: 345 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 404
Query: 225 FSILFVLVG 233
              L  + G
Sbjct: 405 VGSLCAIAG 413

>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
           LLI +L +GV ++    +F   +   S+   + DA ++ +V+M T+GYGD+ P T+  K+
Sbjct: 345 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 404
Query: 225 FSILFVLVG 233
              L  + G
Sbjct: 405 VGSLCAIAG 413

>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
           LLI +L +GV ++    +F   +   S+   + DA ++ +V+M T+GYGD+ P T+  K+
Sbjct: 330 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 389
Query: 225 FSILFVLVG 233
              L  + G
Sbjct: 390 VGSLCAIAG 398

>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
           LLI +L +GV ++    +F   +   S+   + DA ++ +V+M T+GYGD+ P T+  K+
Sbjct: 330 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 389
Query: 225 FSILFVLVG 233
              L  + G
Sbjct: 390 VGSLCAIAG 398

>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 157 FGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDIT 216
           F S  + R  ++ ++L + + V +       F   E +   DAL++ IVT  T+GYGDI 
Sbjct: 11  FRSNGLNRFLMIFVLLVIIIPVPMV------FIEPEINNYPDALWWAIVTATTVGYGDIV 64
Query: 217 PRTVPTKVFSILFVLVGFGFVDILLTGMVSY 247
           P T   ++ + + +L G  F+ ++ + + ++
Sbjct: 65  PVTPIGRILASIMMLFGIAFIGMITSTITNF 95

>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
           IL L L V IY     +F   E+  V  +LY+  VT+ T+GYGD +P T     F+   +
Sbjct: 13  ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 70
Query: 231 LVGFGFVDILLTGMVSYVLD 250
           ++G G   + +  ++ ++++
Sbjct: 71  VLGIGTFAVAVERLLEFLIN 90

>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant Length = 82

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
           IL L L V IY     +F   E+  V  +LY+  VT+ T+GYGD +P T     F+   +
Sbjct: 6   ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 63
Query: 231 LVGFGFVDILLTGMVSYVL 249
           ++G G   + +  ++ +++
Sbjct: 64  VLGIGTFAVAVQRLLEFLI 82

>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ Length = 82

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
           IL L L V IY     +F   E+  V  +LY+  VT+ T+GYGD +P T     F+   +
Sbjct: 6   ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 63
Query: 231 LVGFGFVDILLTGMVSYVL 249
           ++G G   + +  ++ +++
Sbjct: 64  VLGIGTFAVAVERLLEFLI 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
3um7_A	309	Potassium channel subfamily K member 4; potassium	7e-24
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	1e-23
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	9e-08
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-20
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-15
2q67_A	114	Potassium channel protein; inverted teepee, helix	2e-18
2q67_A	114	Potassium channel protein; inverted teepee, helix	8e-15
3ouf_A	97	Potassium channel protein; ION channel, membrane,	4e-18
3ouf_A	97	Potassium channel protein; ION channel, membrane,	3e-15
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	5e-17
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	2e-14
1lnq_A	336	MTHK channels, potassium channel related protein;	6e-14
1lnq_A	336	MTHK channels, potassium channel related protein;	2e-13
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	8e-11
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	9e-06
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	3e-10
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	1e-05
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	5e-10
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	2e-05
2a9h_A	155	Voltage-gated potassium channel; potassium channel	6e-10
2a9h_A	155	Voltage-gated potassium channel; potassium channel	5e-05
1xl4_A	301	Inward rectifier potassium channel; integral membr	8e-10
1xl4_A	301	Inward rectifier potassium channel; integral membr	1e-05
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	9e-10
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	2e-04
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-09
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-05
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	5e-09
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	8e-05
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	9e-09
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	5e-07
1p7b_A	333	Integral membrane channel and cytosolic domains; t	3e-08
1p7b_A	333	Integral membrane channel and cytosolic domains; t	6e-05
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	9e-08
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	4e-05
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	2e-04
2hps_A	186	Coelenterazine-binding protein with bound coelent;	3e-04
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	3e-04
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	3e-04
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	4e-04
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	4e-04
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	4e-04
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	4e-04
3li6_A	66	Calcium-binding protein; calcium signaling protein	4e-04
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	5e-04
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	6e-04
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	6e-04

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score =  100 bits (249), Expect = 7e-24
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 14/199 (7%)

Query: 184 NRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTG 243
              + ++     +  A +F    + TIGYG++  RT   ++F I + LVG     ILL G
Sbjct: 104 QSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAG 163

Query: 244 MVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVG 303
           +         + L  +++ G            V    +R+   +   L   +L +     
Sbjct: 164 VG--------DRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTF 215

Query: 304 VMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMP------GRLFASIWLLVSTLAVARA 357
           V  ++E    L++ Y  ++++TTVG+GD    + P       +     W+L+     A  
Sbjct: 216 VFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASV 275

Query: 358 FLYLAEARVDKRHRKMAKW 376
              +         R  A+ 
Sbjct: 276 LTTIGNWLRVVSRRTRAEM 294

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 98.7 bits (245), Expect = 1e-23
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 20/222 (9%)

Query: 159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR 218
           S+  + Q +  ++   + GV++        + +       AL+F    + T GYG   P 
Sbjct: 61  SEQQLEQFLGRVLEASNYGVSVLS----QASGNWNWDFTSALFFASTVLSTTGYGHTVPL 116

Query: 219 TVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKK 278
           +   K F I++ ++G  F  + LT +V  +        +                   K+
Sbjct: 117 SDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFH---------IRWGFSKQ 167

Query: 279 GRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMP 338
               +   +   + V               +   +L+SFY   +S++T+G GD       
Sbjct: 168 VVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGY 227

Query: 339 G-------RLFASIWLLVSTLAVARAFLYLAEARVDKRHRKM 373
                   ++  + +LL+  +A+        E    K+ RKM
Sbjct: 228 NQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKM 269

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 52.1 bits (124), Expect = 9e-08
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 147 KHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVT 206
                  K        V    V +  +  +   ++     ++        +++ YFC ++
Sbjct: 159 HIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWN------FLESFYFCFIS 212

Query: 207 MCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIK 261
           + TIG GD  P     + F  L+ +    ++ + L  M+  +    E + L+  +
Sbjct: 213 LSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFR 267

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 86.9 bits (215), Expect = 1e-20
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 15/129 (11%)

Query: 160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRT 219
               +   VL  L L+ G   Y          E    +DALYF +VT+ T+G G+ +P+T
Sbjct: 24  DKEFQVLFVLTFLTLTSGTIFYST-------VEGLRPLDALYFSVVTLTTVGDGNFSPQT 76

Query: 220 VPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKG 279
              KVF+IL++ +G G V   +  +   V                 K+   +Y ++V + 
Sbjct: 77  DFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSIL--------SNRKKETDAYRLEVMEK 128

Query: 280 RMRIRMKVA 288
              I  K+A
Sbjct: 129 LEAIEKKLA 137

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 22/96 (22%), Positives = 40/96 (41%)

Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
           R     +  +   +  L +  G      VE L  LD+ Y SV+++TTVG G+ + ++  G
Sbjct: 20  RAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFG 79

Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAK 375
           ++F  +++ +    V      LA            K
Sbjct: 80  KVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRK 115

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR 218
                +   VL IL L  G   Y          E    +DALYF +VT+ T+G G+ +P+
Sbjct: 20  KDKEFQVLFVLTILTLISGTIFYST-------VEGLRPIDALYFSVVTLTTVGAGNFSPQ 72

Query: 219 TVPTKVFSILFVLVGFGFVDILLTGMVSYV 248
           T   K+F+IL++ +G G V   +  +   V
Sbjct: 73  TDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 69.5 bits (170), Expect = 8e-15
 Identities = 20/90 (22%), Positives = 40/90 (44%)

Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
           R     +  +   + +L +  G      VE L  +D+ Y SV+++TTVG G+ + ++  G
Sbjct: 17  RAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFG 76

Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKR 369
           ++F  +++ +    V      LA       
Sbjct: 77  KIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 78.3 bits (193), Expect = 4e-18
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR 218
                +   VL IL L  G   Y          E    +DALYF +VT+ T+GYGD +P+
Sbjct: 3   KDKEFQVLFVLTILTLISGTIFYST-------VEGLRPIDALYFSVVTLTTVGYGDFSPQ 55

Query: 219 TVPTKVFSILFVLVGFGFVDILLTGMVSYVL--DLQENYLLR 258
           T   K+F+IL++ +G G V   +  +   V    +  N + R
Sbjct: 56  TDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR 97

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 70.2 bits (172), Expect = 3e-15
 Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 281 MRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGR 340
           M    +  +   + +L +  G      VE L  +D+ Y SV+++TTVGYGD + ++  G+
Sbjct: 1   MAKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGK 60

Query: 341 LFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVL 378
           +F  +++ +    +   F ++ +  V+ +   +   ++
Sbjct: 61  IFTILYIFIG---IGLVFGFIHKLAVNVQLPSILSNLV 95

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 74.7 bits (184), Expect = 5e-17
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 163 VRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPT 222
             + ++L++  +  G   + F        E      +LY+  VT+ T+GYGD +P T   
Sbjct: 3   ATRILLLVLAVIIYGTAGFHF-------IEGESWTVSLYWTFVTIATVGYGDYSPHTPLG 55

Query: 223 KVFSILFVLVGFGFVDILLTGMVSYVL 249
             F+   +++G G   + +  ++ +++
Sbjct: 56  MYFTCTLIVLGIGTFAVAVERLLEFLI 82

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 22/82 (26%), Positives = 36/82 (43%)

Query: 285 MKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS 344
           +     L +V+  I  G    HF+E   W  S Y + +++ TVGYGD +  +  G  F  
Sbjct: 1   VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTC 60

Query: 345 IWLLVSTLAVARAFLYLAEARV 366
             +++     A A   L E  +
Sbjct: 61  TLIVLGIGTFAVAVERLLEFLI 82

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 161 SIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTV 220
               + ++L++  +  G   + F        E      +LY+  VT+ T+GYGD +P T 
Sbjct: 18  VPATRILLLVLAVIIYGTAGFHF-------IEGESWTVSLYWTFVTIATVGYGDYSPSTP 70

Query: 221 PTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIK 261
               F++  +++G G   + +  ++ ++++ ++  L+  I 
Sbjct: 71  LGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLID 111

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 23/96 (23%), Positives = 42/96 (43%)

Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
              +++     L +V+  I  G    HF+E   W  S Y + +++ TVGYGD +  +  G
Sbjct: 13  PRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG 72

Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAK 375
             F    +++     A A   L E  +++   K+  
Sbjct: 73  MYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
           A   L   L                +      DA+++ + T  T+GYGD  P T   +  
Sbjct: 11  AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70

Query: 226 SILFVLVGFGFVDILLTGMVS 246
           +   +  G      L+T  ++
Sbjct: 71  AEQVMKAGIEVF-ALVTAALA 90

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 289 LALGVVVLCIGIGVGVMHFVEKLG-------WLDSFYLSVMSVTTVGYGDRAFKSMPGRL 341
            A   +   +          E+         + D+ + SV + TTVGYGDR   +  GR 
Sbjct: 10  KAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRK 69

Query: 342 FASIWLL--VSTLAVARAFLYLAEARVDKRHRK 372
            A   +   +   A+  A L     R ++  R 
Sbjct: 70  VAEQVMKAGIEVFALVTAALATDFVRREEERRG 102

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 161 SIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDIT 216
           ++  +A     + L + +                ++      AL++ + T  T+GYGD+ 
Sbjct: 2   ALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLY 61

Query: 217 PRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
           P T+  ++ +++ ++ G      L+T  ++
Sbjct: 62  PVTLWGRLVAVVVMVAGITSFG-LVTAALA 90

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
              A  ++V+ +  G  +    E+       + +  + + SV + TTVGYGD    ++ G
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67

Query: 340 RLFASIWLL--VSTLA-----VARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADI 392
           RL A + ++  +++       +A  F+   + R     R   K            L    
Sbjct: 68  RLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERF 127

Query: 393 DN 394
           D 
Sbjct: 128 DR 129

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 159 SQSIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
             ++  +A     + L + +                ++      AL++ + T  T+GYGD
Sbjct: 27  GSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGD 86

Query: 215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
           + P T+  ++ +++ ++ G      L+T  ++
Sbjct: 87  LYPVTLWGRLVAVVVMVAGITSFG-LVTAALA 117

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 17/139 (12%)

Query: 273 IIDVKKGRMRIRMKV-ALALGVVVLCIGIGVG--VMHFVEK-------LGWLDSFYLSVM 322
           ++ +  GR    ++  A     V+L I +  G  +    E+       + +  + + SV 
Sbjct: 18  LVKLLLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVE 77

Query: 323 SVTTVGYGDRAFKSMPGRLFASIWLL--VSTLA-----VARAFLYLAEARVDKRHRKMAK 375
           + TTVGYGD    ++ GRL A + ++  +++       +A  F+   + +  +  R   K
Sbjct: 78  TATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEK 137

Query: 376 WVLGQDMTVAEFLAADIDN 394
                       L    D 
Sbjct: 138 AAEEAYTRTTRALHERFDR 156

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 56.8 bits (137), Expect = 6e-10
 Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 159 SQSIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
             ++  +A     + L + +                +      DAL++ + T  T+GYGD
Sbjct: 44  GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGD 103

Query: 215 ITPRTVPTKVFSILFVLVGFGFV----DILLTGMVSYVLDLQENYLLRTIK 261
           + P T+  +  +++ ++ G          + T  V    + + +++  + K
Sbjct: 104 LYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK 154

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 284 RMKVALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKS 336
                 A  ++V+ +  G  +    E+       + + D+ + SV + TTVGYGD    +
Sbjct: 49  WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVT 108

Query: 337 MPGRLFASIWLLVSTLAVA 355
           + GR  A + ++    +  
Sbjct: 109 LWGRCVAVVVMVAGITSYG 127

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 58.9 bits (142), Expect = 8e-10
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 167 VVLLILYLSLGV---TIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTK 223
            ++  LYL         Y         +      DA +F + TM TIGYG + P      
Sbjct: 51  TLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLAN 110

Query: 224 VFSILFVLVGFGFVDILLTGMVS 246
               L  L G   + +  + + +
Sbjct: 111 TLVTLEALCGMLGLAVAASLIYA 133

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKL-------GWLDSFYLSVMSVTTVGYGDR 332
            +   + + L  G+ ++   +          +        + D+F+ SV ++ T+GYG  
Sbjct: 43  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102

Query: 333 AFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKM 373
                      ++  L   L +A     L  AR  +    +
Sbjct: 103 IPIGPLANTLVTLEALCGMLGLAV-AASLIYARFTRPTAGV 142

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 12/96 (12%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 159 SQSIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
             ++  +A     + L + +                ++      AL++   T  T+ YGD
Sbjct: 21  GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGD 80

Query: 215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250
           + P T+  ++ +++ ++ G     ++   + ++ + 
Sbjct: 81  LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
              A  ++V+ +  G  +    E+       + +  + + +  + TTV YGD    ++ G
Sbjct: 29  AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG 88

Query: 340 RLFASIWLLVSTLAVA 355
           RL A + ++    +  
Sbjct: 89  RLVAVVVMVAGITSFG 104

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 198 DALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
           DAL++ +VT  T+GYGD+ P T   KV  I  +L G   +  LL G VS
Sbjct: 168 DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISAL-TLLIGTVS 215

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 256 LLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGW-- 313
           LLR ++          ++  +     +IR       G V+L +  G   ++ VE      
Sbjct: 104 LLRFLRILLIISRGSKFLSAIADAADKIR--FYHLFGAVMLTVLYGAFAIYIVEYPDPNS 161

Query: 314 -----LDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLL--VSTLAV 354
                 D+ + +V++ TTVGYGD    +  G++     +L  +S L +
Sbjct: 162 SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 164 RQAVVLLILYLSLGVTI-----YWF----NRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
            + ++ +     + +       Y          F +     +  A+++ +VT+ T GYGD
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGS-----IPQAMWWAVVTLSTTGYGD 180

Query: 215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
             P++   +V +   ++ G G    L  G+++
Sbjct: 181 TIPQSFAGRVLAGAVMMSGIGIF-GLWAGILA 211

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 284 RMKVALALGVVVLCIGIGVGVMHFVEKLGWL-------DSFYLSVMSVTTVGYGDRAFKS 336
              +     +  + +       + +E+            + + +V++++T GYGD   +S
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQS 185

Query: 337 MPGRLFASIWLL--VSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAAD 391
             GR+ A   ++  +    +    L     +  +R   +  W L   + + + L   
Sbjct: 186 FAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPA 242

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 164 RQAVVLLILYLSLGVTIYW----FNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRT 219
            + + LLI +L +GV ++     F   +   S+   + DA ++ +V+M T+GYGD+ P T
Sbjct: 340 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399

Query: 220 VPTKVFSILFVLVGFGFV 237
           +  K+   L  + G   +
Sbjct: 400 IGGKIVGSLCAIAGVLTI 417

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 18/166 (10%)

Query: 291 LGVVVLCIGIGV----GVMHFVEKLGWL-------DSFYLSVMSVTTVGYGDRAFKSMPG 339
           LG+++  + IGV      ++F E            D+F+ +V+S+TTVGYGD    ++ G
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 402

Query: 340 RLFASIWLL--VSTLA-----VARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADI 392
           ++  S+  +  V T+A     +   F Y      +   +     V       +       
Sbjct: 403 KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKS 462

Query: 393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKIT 438
            +   +SKS+Y+  +        +     +      L   N   IT
Sbjct: 463 RSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTLANTNYVNIT 508

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
             L ++  +L   +Y               V A +F + T+ T+GYGD+ P+TV     +
Sbjct: 68  AALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIA 127

Query: 227 ILFVLVGFGFVDILLTGMV 245
            L + VG      L TG+V
Sbjct: 128 TLEIFVGM-SGIALSTGLV 145

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDR 332
           ++   +  A    + V+   +   +    +         G++ +F+ SV ++ TVGYGD 
Sbjct: 57  KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116

Query: 333 AFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKM 373
             +++     A++ + V    +A +   +       R + M
Sbjct: 117 HPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKIM 157

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 52.8 bits (126), Expect = 9e-08
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 167 VVLLILYLSLGV---TIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTK 223
           V L +L+L L     T+Y                 A +F + T+ T+GYGD+ P+TV   
Sbjct: 47  VSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAH 106

Query: 224 VFSILFVLVGFGFVDILLTGMV 245
             + L + VG      L TG  
Sbjct: 107 WIATLEIFVGM-SSIALATGCA 127

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 18/102 (17%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 289 LALGVVVLCIGIGVGVMHFVEKL--------GWLDSFYLSVMSVTTVGYGDRAFKSMPGR 340
           ++L V+ L +      ++ +           G+  +F+ SV ++ TVGYGD   +++   
Sbjct: 47  VSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAH 106

Query: 341 LFASIWLLVSTLAVAR----AFLYLAEARVDKRHRKMAKWVL 378
             A++ + V   ++A     AF+ +++ +        ++  +
Sbjct: 107 WIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAV 148

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 62/414 (14%), Positives = 125/414 (30%), Gaps = 99/414 (23%)

Query: 91  LQQSSSIQDAVLL---PQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAVI---- 143
           +    ++   + L      +Q   +Q     ++  NY F  S +   +  P+M       
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 144 ------ND----LKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIY--------WFNR 185
                 ND     K++  V + Q   +  +RQA  LL L  +  V I         W   
Sbjct: 115 QRDRLYNDNQVFAKYN--VSRLQPYLK--LRQA--LLELRPAKNVLIDGVLGSGKTWV-- 166

Query: 186 HNFTASET---HPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLT 242
               A +    + V   + F I  +  +   + +P TV   +  +L+ +           
Sbjct: 167 ----ALDVCLSYKVQCKMDFKIFWL-NLKNCN-SPETVLEMLQKLLYQIDPNW--TSRSD 218

Query: 243 GMVSYVLDLQE--NYLLRTIKGGGHKESPGSYII--DVKKGRM--------RI----RMK 286
              +  L +      L R +K    K      ++  +V+  +         +I    R K
Sbjct: 219 HSSNIKLRIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 287 -VALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMS-VTTVGYGD---RAFKSMPGRL 341
            V   L          + + H    L   +    S++         D       + P   
Sbjct: 276 QVTDFLSAATTTH---ISLDHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNP--- 327

Query: 342 FASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQ--DMTVAEFLAADIDNNGFVS 399
                  +S +A     +    A  D   + +    L    + ++   L        F  
Sbjct: 328 -----RRLSIIA---ESIRDGLATWD-NWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDR 377

Query: 400 -----KSEYVIYKLKEM--GKISEKDVMQI---CHKFDRLDTGNC-GKITLADL 442
                 S ++   L  +    + + DVM +    HK+  ++       I++  +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Length = 204

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
           LG  +  AE        D + +G +   E++      M +  E  +      F +LD   
Sbjct: 66  LGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAA---FAKLDRSG 122

Query: 434 CGKITLADLMEA 445
            G +T+ DL   
Sbjct: 123 DGVVTVDDLRGV 134

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Length = 183

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 391 DIDNNGFVSKSEYV-----IYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLME 444
           D D++G +++ +       +    E  ++S  ++ Q+     +  D    G I L++   
Sbjct: 108 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH 167

Query: 445 A 445
            
Sbjct: 168 V 168

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Length = 186

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMG-KISE 416
               A   + K   +     + Q + +  +   D D +G+VS  E+  + L+ +G  +++
Sbjct: 81  AAVNATDSLLKMKGEEKAMAVIQSLIM--YDCIDTDKDGYVSLPEFKAF-LQAVGPDLTD 137

Query: 417 KDVMQICHKFDRLDTGNCGKITLADLMEA 445
              +     F+ LD    G+I+  + +  
Sbjct: 138 DKAITC---FNTLDFNKNGQISRDEFLVT 163

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Length = 174

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 385 AEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
             F A D + +  +S+ EY I+    +G + +         FD +DT N G ++L + + 
Sbjct: 98  LFFRAVDTNEDNNISRDEYGIF-FGMLG-LDKTMAPAS---FDAIDTNNDGLLSLEEFVI 152

Query: 445 A 445
           A
Sbjct: 153 A 153

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Length = 166

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
           F+  A  R+  +  + A+    +    A    AD D +G V+ ++     L   G + E 
Sbjct: 77  FVTGAVKRLRDKPDRFAEMA--RPFLHAALGVADTDGDGAVTVADTARA-LTAFG-VPED 132

Query: 418 DVMQICHKFDRLDTGNCGKITLADLMEA 445
              Q       LDT   GK+   +++ A
Sbjct: 133 LARQA---AAALDTDGDGKVGETEIVPA 157

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A Length = 226

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 391 DIDNNGFVSKSE---YVIYKLKEMGK-ISEKDVMQICHK-FDRLDTGNCGKITLADLMEA 445
           D+   GF+ + E    V+  L E G  + +  +  I  K F+  DT + GKI   +    
Sbjct: 132 DLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSL 191

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Length = 208

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 358 FLYLAE--ARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKIS 415
           ++      A  ++   +  +  L   ++ + +   D D +G V   E     +K    + 
Sbjct: 103 WVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTM-MKAFD-VP 160

Query: 416 EKDVMQICHKFDRLDTGNCGKITLADLMEA 445
           ++        F++ DT   GK+   +L+  
Sbjct: 161 QEAAYTF---FEKADTDKSGKLERTELVHL 187

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Length = 176

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
           F+ + E  + ++       VLG  +        D + +G ++  E+  + L  +G +S+ 
Sbjct: 80  FIRVTENLIFEQGEASFNRVLGPVVKGI-VGMCDKNADGQINADEFAAW-LTALG-MSKA 136

Query: 418 DVMQICHKFDRLDTGNCGKITLADLMEA 445
           +  +    F+++DT   G+++L +L+ A
Sbjct: 137 EAAEA---FNQVDTNGNGELSLDELLTA 161

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Length = 191

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 5/88 (5%)

Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
           +L +    V    +  +            F   D   +  + K EY        G I + 
Sbjct: 86  WLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTV-YMSYG-IPKS 143

Query: 418 DVMQICHKFDRLDTGNCGKITLADLMEA 445
           D       FD L  G    +T       
Sbjct: 144 DCDAA---FDTLSDGGKTMVTREIFARL 168

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Length = 66

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
           F   D++ +G VS  E   +  K+    +E+ +  I    D  D GN G+I   +  + 
Sbjct: 6   FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDA-D-GN-GEIDQNEFAKF 61

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Length = 214

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 387 FLAADIDNNGFVSKSEY--VIYKL---KEMGKISEKDVMQICHK-FDRLDTGNCGKITLA 440
           F   D D++G +++ +   ++  L    E  ++S  ++ Q+     +  D    G I L+
Sbjct: 135 FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194

Query: 441 DLMEA 445
           +    
Sbjct: 195 EFQHV 199

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Length = 183

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 387 FLAADIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKI 437
           F   DI+ +G+++K E        Y +        + E    Q     F ++D    G +
Sbjct: 98  FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 157

Query: 438 TLADLMEANK 447
           TL + +E+ +
Sbjct: 158 TLDEFLESXQ 167

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Length = 197

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
           +G      +        D + +G +  ++++   + +   + ++  +     F   D   
Sbjct: 86  IGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIP---FKFFDIDG 142

Query: 434 CGKITLADLMEA 445
            GKI++ +L   
Sbjct: 143 NGKISVEELKRI 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	100.0
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.98
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.7
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.69
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.68
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.66
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.66
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.64
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.64
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.64
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.62
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.61
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.6
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.58
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.57
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.55
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.54
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.52
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.52
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.49
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.48
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.42
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.42
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.36
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.36
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.34
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.32
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.31
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.3
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.29
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.28
1lnq_A	336	MTHK channels, potassium channel related protein;	99.27
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.27
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.26
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.21
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.2
1lnq_A	336	MTHK channels, potassium channel related protein;	99.17
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.12
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.11
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.03
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.88
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.84
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.78
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.78
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.75
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.09
3pjz_A	494	Potassium uptake protein TRKH; structural genomics	96.59
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	96.49
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	94.74
3li6_A	66	Calcium-binding protein; calcium signaling protein	94.7
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	94.53
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	94.5
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	94.47
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	94.3
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	94.28
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	94.0
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	93.83
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	93.73
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	93.56
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	93.51
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	93.46
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	93.46
3pjz_A	494	Potassium uptake protein TRKH; structural genomics	93.3
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	93.21
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	93.12
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	93.06
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	92.98
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	92.91
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	92.86
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	92.77
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	92.76
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	92.58
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	92.51
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	92.49
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	92.38
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	92.36
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	92.32
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	92.31
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	92.22
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	92.21
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	92.17
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	92.16
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	92.15
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	92.13
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	92.12
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	92.09
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	92.07
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	91.99
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	91.98
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	91.93
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	91.92
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	91.87
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	91.84
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	91.79
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	91.75
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	91.73
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	91.68
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	91.51
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	91.44
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	91.38
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	91.35
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	91.32
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	91.31
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	91.31
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	91.3
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	91.22
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	91.19
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	91.18
1c07_A	95	Protein (epidermal growth factor receptor pathway	91.15
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	91.14
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	91.12
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	91.09
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	91.06
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	91.06
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	91.0
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	90.96
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	90.9
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	90.83
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	90.78
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	90.77
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	90.77
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	90.76
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	90.73
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	90.73
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	90.71
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	90.65
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	90.61
2jnf_A	158	Troponin C; stretch activated muscle contraction,	90.59
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	90.56
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	90.56
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	90.51
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	90.46
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	90.44
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	90.42
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	90.36
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	90.34
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	90.32
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	90.31
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	90.31
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	90.3
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	90.29
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	90.29
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	90.28
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	90.25
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	90.25
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	90.25
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	90.21
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	90.2
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	90.19
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	90.17
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	90.16
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	90.13
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	90.12
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	90.12
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	90.07
1y1x_A	191	Leishmania major homolog of programmed cell death	89.97
2hps_A	186	Coelenterazine-binding protein with bound coelent;	89.91
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	89.83
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	89.83
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	89.82
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	89.81
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	89.8
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	89.79
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	89.78
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	89.73
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	89.68
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	89.63
3fwb_A	161	Cell division control protein 31; gene gating, com	89.59
3fwb_A	161	Cell division control protein 31; gene gating, com	89.59
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	89.57
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	89.47
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	89.44
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	89.35
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	89.3
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	89.22
1c07_A	95	Protein (epidermal growth factor receptor pathway	89.14
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	89.12
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	89.0
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	88.99
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	88.95
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	88.95
1y1x_A	191	Leishmania major homolog of programmed cell death	88.83
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	88.82
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	88.8
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	88.74
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	88.74
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	88.7
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	88.65
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	88.64
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	88.6
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	88.59
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	88.57
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	88.57
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	88.48
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	88.45
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	88.33
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	88.31
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	88.26
2jnf_A	158	Troponin C; stretch activated muscle contraction,	88.25
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	88.23
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	88.19
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	88.15
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	88.12
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	88.0
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	87.94
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	87.86
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	87.86
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	87.85
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	87.76
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	87.74
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	87.7
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	87.67
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	87.65
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	87.55
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	87.54
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	87.5
1xk4_C	113	Calgranulin B; S100 family, heterotetramer, metal	87.49
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	87.29
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	87.27
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	87.22
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	87.11
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	87.08
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	87.0
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	86.9
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	86.8
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	86.76
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	86.65
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	86.62
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	86.61
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	86.47
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	86.29
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	86.23
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	86.16
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	86.12
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	85.68
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	85.64
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	85.62
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	85.48
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	85.45
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	85.39
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	85.32
3zwh_A	104	Protein S100-A4; Ca-binding protein-motor protein	85.03
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	85.01
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	84.93
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	84.86
1snl_A	103	Nucleobindin 1, calnuc; EF-hand, calcium-binding,	84.82
4eto_A	93	Protein S100-A4; calcium-binding protein, EF-hand,	84.59
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	84.13
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	84.06
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	84.01
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	83.81
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	83.79
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	83.65
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	83.59
2kax_A	92	Protein S100-A5; EF-hand, calcium binding protien,	83.42
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	83.33
1cb1_A	78	Calbindin D9K; calcium-binding protein; NMR {Sus s	83.32
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	83.26
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	82.93
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	82.91
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	82.83
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	82.76
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	82.63
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	82.62
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	82.58
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	82.55
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	82.52
2jq6_A	139	EH domain-containing protein 1; metal binding prot	82.5
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	82.45
1xk4_A	93	Calgranulin A; S100 family, heterotetramer, metal	82.33
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	82.22
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	82.2
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	82.08
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	81.92
1k8u_A	90	S100A6, calcyclin, CACY; calcium regulatory protei	81.83
1qls_A	99	S100C protein, calgizzarin; metal-binding protein/	81.33
4drw_A	121	Protein S100-A10/annexin A2 chimeric protein; atyp	80.76
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	80.75
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	80.48
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	80.37
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	80.25
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	80.18
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	80.17

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=276.12  Aligned_cols=207  Identities=22%  Similarity=0.305  Sum_probs=156.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhhhcccc------------------------------------------------
Q 013211          156 QFGSQSIVRQAVVLLILYLSLGVTIYWFNRHN------------------------------------------------  187 (447)
Q Consensus       156 ~~~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~------------------------------------------------  187 (447)
                      ..++......+++.+++|+++|+++|...+..                                                
T Consensus         6 ~~r~~~~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~   85 (280)
T 3ukm_A            6 ASNSATMFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQ   85 (280)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccC
Confidence            33445555566677889999999999863200                                                


Q ss_pred             cCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 013211          188 FTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKE  267 (447)
Q Consensus       188 ~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~  267 (447)
                      ....+.|+|.||+||+++|+|||||||++|.|+.||+|+++|+++|++++++.++.+++.+.....+...+.++   ++.
T Consensus        86 ~~~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~  162 (280)
T 3ukm_A           86 ASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFH---IRW  162 (280)
T ss_dssp             ----CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC-------
T ss_pred             CCCCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence            02346799999999999999999999999999999999999999999999999999988776543221111100   000


Q ss_pred             CCCcceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-ccchhhHHHHHHhhhhccccCCCccCCcc-------h
Q 013211          268 SPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVE-KLGWLDSFYLSVMSVTTVGYGDRAFKSMP-------G  339 (447)
Q Consensus       268 ~~~~~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e-~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~-------g  339 (447)
                             ...+.+......+.+.+.++++++++|+++++.+| +|+|+||+||+++|+|||||||++|.+..       |
T Consensus       163 -------~~~~~~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~  235 (280)
T 3ukm_A          163 -------GFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELY  235 (280)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHH
T ss_pred             -------cCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhH
Confidence                   01122222223344445556667789999999998 89999999999999999999999999986       5


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          340 RLFASIWLLVSTLAVARAFLYLAEARVDKRHRK  372 (447)
Q Consensus       340 r~f~ii~il~G~~~va~~~~~l~~~~~~~~~r~  372 (447)
                      |+++++|+++|+++++..++.+++....++.++
T Consensus       236 r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~  268 (280)
T 3ukm_A          236 KIGITCYLLLGLIAMLVVLETFCELHELKKFRK  268 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888766554

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.98  E-value=3.8e-32  Score=269.75  Aligned_cols=166  Identities=22%  Similarity=0.325  Sum_probs=130.9

Q ss_pred             CCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 013211          192 ETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGS  271 (447)
Q Consensus       192 ~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~  271 (447)
                      +.|+|.||+||+++|+|||||||++|.|..||+|+++|+++|+++++++++.+++.+.+..++.+. .+++...+.+.  
T Consensus       112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~-~le~~~~~~~~--  188 (309)
T 3um7_A          112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG-HIEAIFLKWHV--  188 (309)
T ss_dssp             -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHTTTC---
T ss_pred             CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHhcccc--
Confidence            459999999999999999999999999999999999999999999999999999988765544322 22111011110  


Q ss_pred             ceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCcchh------HHHHH
Q 013211          272 YIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGR------LFASI  345 (447)
Q Consensus       272 ~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr------~f~ii  345 (447)
                           ...+.+....+...+..+++++++|+++|+..|+|+|+||+||+++|+|||||||++|.+..||      +++++
T Consensus       189 -----~~~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~  263 (309)
T 3um7_A          189 -----PPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWF  263 (309)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHH
T ss_pred             -----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHH
Confidence                 0112222122333334445667889999999999999999999999999999999999999987      49999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013211          346 WLLVSTLAVARAFLYLAEAR  365 (447)
Q Consensus       346 ~il~G~~~va~~~~~l~~~~  365 (447)
                      |+++|++++++.++.+++..
T Consensus       264 ~il~Gl~~~a~~~~~i~~~~  283 (309)
T 3um7_A          264 WILLGLAYFASVLTTIGNWL  283 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998877654

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.70  E-value=4e-17  Score=144.19  Aligned_cols=85  Identities=24%  Similarity=0.293  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHH
Q 013211          287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL  359 (447)
Q Consensus       287 l~l~l~i~~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~  359 (447)
                      +...+.++++++++++.+++..|+       |+|.||+||+++|+|||||||++|.|..||+++++++++|+++++.+++
T Consensus         8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~   87 (139)
T 3eff_K            8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTA   87 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556667788999999998       9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013211          360 YLAEARVDKRHR  371 (447)
Q Consensus       360 ~l~~~~~~~~~r  371 (447)
                      .+++.+.++..+
T Consensus        88 ~i~~~~~~~~~~   99 (139)
T 3eff_K           88 ALATWFVGREQE   99 (139)
T ss_dssp             HHTTTTTHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998877665433

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.69  E-value=9.3e-17  Score=129.42  Aligned_cols=76  Identities=29%  Similarity=0.410  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          290 ALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEAR  365 (447)
Q Consensus       290 ~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~  365 (447)
                      ++.+++..+++|+++++..|+|++.||+||+++|+|||||||++|.+..||+++++++++|+.+++..++.+++.+
T Consensus         6 ~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A            6 ILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555677899999999999999999999999999999999999999999999999999999999999888654

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.68  E-value=1.5e-16  Score=132.26  Aligned_cols=82  Identities=26%  Similarity=0.337  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          286 KVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEAR  365 (447)
Q Consensus       286 ~l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~  365 (447)
                      .+...+.++++++++|+++++..|+|+|.||+||+++|+|||||||++|.+..||+++++++++|+.+++.+++.+++..
T Consensus         6 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~   85 (97)
T 3ouf_A            6 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV   85 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666777899999999999999999999999999999999999999999999999999999999999988665


Q ss_pred             HH
Q 013211          366 VD  367 (447)
Q Consensus       366 ~~  367 (447)
                      ..
T Consensus        86 ~~   87 (97)
T 3ouf_A           86 QL   87 (97)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.66  E-value=5.6e-17  Score=143.16  Aligned_cols=68  Identities=26%  Similarity=0.308  Sum_probs=58.8

Q ss_pred             HHHHHHHhHh--ccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          300 IGVGVMHFVE--KLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD  367 (447)
Q Consensus       300 ~ga~~~~~~e--~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~  367 (447)
                      +++..+++.|  .|+|.||+||+++|+|||||||++|.|..||+++++++++|+++++.+++.+++.+.+
T Consensus        29 ~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~   98 (137)
T 4h33_A           29 IIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC   98 (137)
T ss_dssp             HTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444  4999999999999999999999999999999999999999999999999988876643

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.66  E-value=1.3e-16  Score=134.04  Aligned_cols=86  Identities=23%  Similarity=0.169  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcc-------chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHH
Q 013211          286 KVALALGVVVLCIGIGVGVMHFVEKL-------GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAF  358 (447)
Q Consensus       286 ~l~l~l~i~~~~i~~ga~~~~~~e~~-------s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~  358 (447)
                      .+...+.++++++++++.++++.|+|       +|.||+||+++|+|||||||++|.+..||+++++++++|+.+++.++
T Consensus         7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~   86 (103)
T 2k1e_A            7 EAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVT   86 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666677899999999986       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013211          359 LYLAEARVDKRHR  371 (447)
Q Consensus       359 ~~l~~~~~~~~~r  371 (447)
                      +.+++.+.++.++
T Consensus        87 ~~i~~~~~~~~~~   99 (103)
T 2k1e_A           87 AALATDFVRREEE   99 (103)
T ss_dssp             HHHHTTGGGHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999877765444

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.64  E-value=8e-16  Score=133.09  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          292 GVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEA  364 (447)
Q Consensus       292 ~i~~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~  364 (447)
                      ..+++++++++.+++..|+       |++.||+||+++|+|||||||++|.|..||+++++++++|+.+++..++.+++.
T Consensus        34 ~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~  113 (122)
T 2ih3_C           34 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW  113 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556678888888987       899999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 013211          365 RVDKRHR  371 (447)
Q Consensus       365 ~~~~~~r  371 (447)
                      +.+..++
T Consensus       114 ~~~~~~~  120 (122)
T 2ih3_C          114 FVGREQE  120 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8876544

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.64  E-value=1.2e-15  Score=136.23  Aligned_cols=77  Identities=26%  Similarity=0.333  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          287 VALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAE  363 (447)
Q Consensus       287 l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~  363 (447)
                      +..++.++++++++|+++++..|+|+|.||+||+++|+|||||||++|.|..||+++++++++|+++++.+++.++.
T Consensus        27 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~  103 (148)
T 3vou_A           27 FQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV  103 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666778899999999999999999999999999999999999999999999999999999999988875

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.64  E-value=8.3e-16  Score=131.48  Aligned_cols=78  Identities=24%  Similarity=0.318  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          288 ALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEAR  365 (447)
Q Consensus       288 ~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~  365 (447)
                      ...+.++++.+++|+++++..|+|+|.||+||+++|+|||||||++|.+..||+++++++++|+++++..++.+++..
T Consensus        25 ~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~  102 (114)
T 2q67_A           25 QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV  102 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556667899999999999999999999999999999999999999999999999999999999998888655

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.62  E-value=3.5e-16  Score=131.34  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHH
Q 013211          164 RQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTG  243 (447)
Q Consensus       164 ~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~  243 (447)
                      ...++++++++++++.+++..+....+...++|.||+||+++|+|||||||++|.++.||+++++++++|+.++++.++.
T Consensus         9 l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~   88 (103)
T 2k1e_A            9 QKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAA   88 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555556666666655544434556689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013211          244 MVSYVLDLQ  252 (447)
Q Consensus       244 ~~~~l~~~~  252 (447)
                      +.+.+.+..
T Consensus        89 i~~~~~~~~   97 (103)
T 2k1e_A           89 LATDFVRRE   97 (103)
T ss_dssp             HHTTGGGHH
T ss_pred             HHHHHHHHH
Confidence            988776543

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.61  E-value=4.3e-16  Score=137.53  Aligned_cols=90  Identities=19%  Similarity=0.395  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013211          165 QAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGM  244 (447)
Q Consensus       165 ~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~  244 (447)
                      .+++++++++++++.+++..+....+...|+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+
T Consensus        10 ~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i   89 (139)
T 3eff_K           10 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL   89 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666655554455667999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013211          245 VSYVLDLQEN  254 (447)
Q Consensus       245 ~~~l~~~~~~  254 (447)
                      ++.+.+...+
T Consensus        90 ~~~~~~~~~~   99 (139)
T 3eff_K           90 ATWFVGREQE   99 (139)
T ss_dssp             TTTTTHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9887665443

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.60  E-value=1.1e-15  Score=137.58  Aligned_cols=78  Identities=24%  Similarity=0.301  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhcc-------chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          291 LGVVVLCIGIGVGVMHFVEKL-------GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAE  363 (447)
Q Consensus       291 l~i~~~~i~~ga~~~~~~e~~-------s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~  363 (447)
                      +.++++++++++++++..|++       +|.||+||+++|+|||||||++|.|..||+++++++++|+++++.+++.+++
T Consensus        56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~  135 (155)
T 2a9h_A           56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVAT  135 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455567889999999987       8999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 013211          364 ARVDK  368 (447)
Q Consensus       364 ~~~~~  368 (447)
                      .+.++
T Consensus       136 ~~~~~  140 (155)
T 2a9h_A          136 WFVGR  140 (155)
T ss_dssp             HHHSC
T ss_pred             HHHHH
Confidence            87764

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.58  E-value=2.4e-15  Score=130.12  Aligned_cols=89  Identities=18%  Similarity=0.359  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013211          165 QAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGM  244 (447)
Q Consensus       165 ~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~  244 (447)
                      ..+..+++++++++.+++..++...+...|+|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i  110 (122)
T 2ih3_C           31 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL  110 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555565555544444345567999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013211          245 VSYVLDLQE  253 (447)
Q Consensus       245 ~~~l~~~~~  253 (447)
                      .+.+.+..+
T Consensus       111 ~~~~~~~~~  119 (122)
T 2ih3_C          111 ATWFVGREQ  119 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876543

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.57  E-value=1.9e-15  Score=125.56  Aligned_cols=83  Identities=35%  Similarity=0.570  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHH
Q 013211          160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDI  239 (447)
Q Consensus       160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~  239 (447)
                      ...+..+++++++++++|+++|...+       .|+|.||+||+++|+|||||||++|.|..||+++++++++|++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~g~~~~~~~e-------~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~   76 (97)
T 3ouf_A            4 DKEFQVLFVLTILTLISGTIFYSTVE-------GLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFG   76 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            45566677777888888999887653       49999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013211          240 LLTGMVSYVL  249 (447)
Q Consensus       240 ~~~~~~~~l~  249 (447)
                      +++.++..+.
T Consensus        77 ~i~~i~~~~~   86 (97)
T 3ouf_A           77 FIHKLAVNVQ   86 (97)
T ss_dssp             HHHHHHHHTH
T ss_pred             HHHHHHHHHh
Confidence            9998887664

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.55  E-value=3.4e-15  Score=120.25  Aligned_cols=76  Identities=22%  Similarity=0.517  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 013211          166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMV  245 (447)
Q Consensus       166 ~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~  245 (447)
                      ++.+++++++.|+++|+..+       .|++.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+.
T Consensus         6 ~~~l~~~~~~~g~~~~~~~e-------~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~   78 (82)
T 3ldc_A            6 ILLLVLAVIIYGTAGFHFIE-------GESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLL   78 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667788888886543       48999999999999999999999999999999999999999999999999888


Q ss_pred             HHH
Q 013211          246 SYV  248 (447)
Q Consensus       246 ~~l  248 (447)
                      +.+
T Consensus        79 ~~l   81 (82)
T 3ldc_A           79 EFL   81 (82)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.54  E-value=2.4e-15  Score=135.40  Aligned_cols=87  Identities=21%  Similarity=0.402  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013211          165 QAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGM  244 (447)
Q Consensus       165 ~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~  244 (447)
                      .+++++++++++++++++..+...+++..++|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+
T Consensus        54 ~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i  133 (155)
T 2a9h_A           54 AATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAV  133 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566666655555444445567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 013211          245 VSYVLDL  251 (447)
Q Consensus       245 ~~~l~~~  251 (447)
                      .+.+.+.
T Consensus       134 ~~~~~~~  140 (155)
T 2a9h_A          134 ATWFVGR  140 (155)
T ss_dssp             HHHHHSC
T ss_pred             HHHHHHH
Confidence            9887653

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.52  E-value=8.4e-15  Score=125.21  Aligned_cols=79  Identities=34%  Similarity=0.560  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHH
Q 013211          163 VRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLT  242 (447)
Q Consensus       163 v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~  242 (447)
                      +..+++++++++++|+++|...+       .|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++
T Consensus        24 ~~~~~~~~~~~~~~g~~~~~~~e-------~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~   96 (114)
T 2q67_A           24 FQVLFVLTILTLISGTIFYSTVE-------GLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIH   96 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677778888998887653       49999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 013211          243 GMVSYV  248 (447)
Q Consensus       243 ~~~~~l  248 (447)
                      .+.+.+
T Consensus        97 ~l~~~~  102 (114)
T 2q67_A           97 KLAVNV  102 (114)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.52  E-value=4.1e-15  Score=131.17  Aligned_cols=83  Identities=25%  Similarity=0.555  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHH
Q 013211          162 IVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILL  241 (447)
Q Consensus       162 ~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~  241 (447)
                      +...+++++++.+++++.+++.+      .+.|+|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++++
T Consensus        16 l~~~l~~~~~~~~~~~~~~~~~e------~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~   89 (137)
T 4h33_A           16 LNRFLMIFVLLVIIIPVPMVFIE------PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMIT   89 (137)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHC------SSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555566554      246999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013211          242 TGMVSYVLD  250 (447)
Q Consensus       242 ~~~~~~l~~  250 (447)
                      +.+++.+.+
T Consensus        90 ~~i~~~~~~   98 (137)
T 4h33_A           90 STITNFFRC   98 (137)
T ss_dssp             HHHHTTTTT
T ss_pred             HHHHHHHHH
Confidence            988887643

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.49  E-value=1.4e-16  Score=144.91  Aligned_cols=74  Identities=26%  Similarity=0.318  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          295 VLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD  367 (447)
Q Consensus       295 ~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~  367 (447)
                      ++++++++++++..|+       |+|.||+||+++|+|||||||++|.|..||+++++++++|+++++++++.+++.+.+
T Consensus        43 ~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~  122 (166)
T 3pjs_K           43 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG  122 (166)
T ss_dssp             TTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred             HHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677888888888       999999999999999999999999999999999999999999999999988876654


Q ss_pred             H
Q 013211          368 K  368 (447)
Q Consensus       368 ~  368 (447)
                      .
T Consensus       123 ~  123 (166)
T 3pjs_K          123 Q  123 (166)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.48  E-value=4e-14  Score=126.30  Aligned_cols=79  Identities=34%  Similarity=0.549  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHH
Q 013211          161 SIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDIL  240 (447)
Q Consensus       161 ~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~  240 (447)
                      ..+..+++++++++++|+++|...       +.|+|.||+||+++|+|||||||++|.|..||+++++++++|+++++++
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~~~~~-------e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~   97 (148)
T 3vou_A           25 KEFQVLFVLTFLTLTSGTIFYSTV-------EGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGF   97 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-------SCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            344556677777888888888754       3499999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 013211          241 LTGMVS  246 (447)
Q Consensus       241 ~~~~~~  246 (447)
                      ++.++.
T Consensus        98 ~~~~~~  103 (148)
T 3vou_A           98 IHKLAV  103 (148)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            888876

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.42  E-value=5e-13  Score=126.26  Aligned_cols=82  Identities=22%  Similarity=0.261  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHH
Q 013211          287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL  359 (447)
Q Consensus       287 l~l~l~i~~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~  359 (447)
                      +...+.++++++.+++++++..|+       +++.||+||+++|+|||||||++|.|..||+++++++++|+++++..++
T Consensus       133 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~  212 (223)
T 1orq_C          133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG  212 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455556678888888988       8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013211          360 YLAEARVDK  368 (447)
Q Consensus       360 ~l~~~~~~~  368 (447)
                      .+++.+.++
T Consensus       213 ~i~~~~~~~  221 (223)
T 1orq_C          213 TVSNMFQKI  221 (223)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999877653

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.42  E-value=8.2e-16  Score=139.93  Aligned_cols=83  Identities=19%  Similarity=0.410  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013211          168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSY  247 (447)
Q Consensus       168 i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~  247 (447)
                      +++++++++++++++..+....+...|+|.||+||+++|+|||||||++|.|..||+++++++++|+++++++++.+++.
T Consensus        40 ~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~  119 (166)
T 3pjs_K           40 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW  119 (166)
T ss_dssp             SSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566666555554455667999999999999999999999999999999999999999999999999988877


Q ss_pred             HHH
Q 013211          248 VLD  250 (447)
Q Consensus       248 l~~  250 (447)
                      +.+
T Consensus       120 ~~~  122 (166)
T 3pjs_K          120 FVG  122 (166)
T ss_dssp             SSS
T ss_pred             HHH
Confidence            654

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.36  E-value=3.2e-13  Score=132.15  Aligned_cols=84  Identities=18%  Similarity=0.336  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCC-------chhhHHHHHHHHH
Q 013211          163 VRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPT-------KVFSILFVLVGFG  235 (447)
Q Consensus       163 v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~g-------r~f~i~~~l~Gi~  235 (447)
                      +...++++++++++|+++|+..++      .|+|+||+|||++|+|||||||++|.+..|       |+++++|+++|++
T Consensus       175 ~~l~~~~~~~~~~~ga~~~~~~E~------~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~  248 (280)
T 3ukm_A          175 VLLGFVTVSCFFFIPAAVFSVLED------DWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLI  248 (280)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHSS------SCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhc------CCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence            334455666778889988876532      499999999999999999999999999975       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013211          236 FVDILLTGMVSYVLDLQ  252 (447)
Q Consensus       236 l~~~~~~~~~~~l~~~~  252 (447)
                      ++++.++.+.+.+...+
T Consensus       249 ~~~~~~~~i~~~~~~~~  265 (280)
T 3ukm_A          249 AMLVVLETFCELHELKK  265 (280)
T ss_dssp             HHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988775443

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.36  E-value=3.2e-12  Score=135.58  Aligned_cols=69  Identities=26%  Similarity=0.370  Sum_probs=58.7

Q ss_pred             HHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          299 GIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       299 ~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      ++|++++ +.|+       .++.+|+||+++|+|||||||++|.+..|++|+++++++|+++++++++.+.+.+.+.
T Consensus       356 if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~  431 (514)
T 2r9r_B          356 LFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF  431 (514)
T ss_dssp             HHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444 5565       3799999999999999999999999999999999999999999999988888766553

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.34  E-value=1e-12  Score=124.15  Aligned_cols=85  Identities=27%  Similarity=0.409  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013211          165 QAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGM  244 (447)
Q Consensus       165 ~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~  244 (447)
                      .+..++++.++.+++.++.|+ ...+...|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i  214 (223)
T 1orq_C          136 LFGAVMLTVLYGAFAIYIVEY-PDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTV  214 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS-SSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333343444444444443 3334456899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 013211          245 VSYVLD  250 (447)
Q Consensus       245 ~~~l~~  250 (447)
                      ++.+.+
T Consensus       215 ~~~~~~  220 (223)
T 1orq_C          215 SNMFQK  220 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.32  E-value=1.4e-12  Score=130.94  Aligned_cols=92  Identities=20%  Similarity=0.337  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHH
Q 013211          158 GSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV  237 (447)
Q Consensus       158 ~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~  237 (447)
                      +++.++..+++++++..++++++|+++.+.+.+.+.++|.+|+||+++|+|||||||++|.++.||+++++++++|+.++
T Consensus        59 ~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~  138 (333)
T 1p7b_A           59 SWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGI  138 (333)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            45555555555555556667777887765455556789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013211          238 DILLTGMVSYVL  249 (447)
Q Consensus       238 ~~~~~~~~~~l~  249 (447)
                      ++.++.+...+.
T Consensus       139 a~~ig~i~~~~~  150 (333)
T 1p7b_A          139 ALSTGLVFARFA  150 (333)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999888877654

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.31  E-value=7.6e-12  Score=126.01  Aligned_cols=85  Identities=16%  Similarity=0.154  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcc-------chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHH
Q 013211          287 VALALGVVVLCIGIGVGVMHFVEKL-------GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL  359 (447)
Q Consensus       287 l~l~l~i~~~~i~~ga~~~~~~e~~-------s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~  359 (447)
                      +...+.++++++.+++++++..|++       ++.||+||+++|+|||||||++|.|..||+++++++++|++++++.++
T Consensus       129 l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~  208 (355)
T 3beh_A          129 LIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAG  208 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555566788888888875       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013211          360 YLAEARVDKRHR  371 (447)
Q Consensus       360 ~l~~~~~~~~~r  371 (447)
                      .+++.+.++.++
T Consensus       209 ~i~~~~~~~~~~  220 (355)
T 3beh_A          209 ILATGFYQEVRR  220 (355)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888765433

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.30  E-value=1.2e-12  Score=140.06  Aligned_cols=115  Identities=21%  Similarity=0.284  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHH-H
Q 013211          166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTG-M  244 (447)
Q Consensus       166 ~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~-~  244 (447)
                      .++++++++++++++|++....+. ...|+|++|+||+++|+|||||||++|.|+.||+|+++++++|+.++++.++. +
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~  101 (565)
T 4gx0_A           23 YCAFLLVMLLAYASIFRYLMWHLE-GRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGF  101 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-CCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455554443221111 23589999999999999999999999999999999999999999999998887 6


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCcceeeeccchh
Q 013211          245 VSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRM  281 (447)
Q Consensus       245 ~~~l~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~  281 (447)
                      .+.+.........+..++.+.....+.|++.|+-++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G~g~~  138 (565)
T 4gx0_A          102 VSMFLAPWIERRLRYHPTIELPDDTRGHILIFGIDPI  138 (565)
T ss_dssp             HHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEESCCHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCeEEEECCChH
Confidence            6666544322222211112222455778888876653

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.29  E-value=3.9e-12  Score=135.93  Aligned_cols=78  Identities=19%  Similarity=0.395  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHh----Hhc--cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 013211          292 GVVVLCIGIGVGVMHF----VEK--LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLY-LAEA  364 (447)
Q Consensus       292 ~i~~~~i~~ga~~~~~----~e~--~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~-l~~~  364 (447)
                      +++++++++++++|++    .|+  |+|+||+||+++|+|||||||++|.|..||+|+++++++|++++++.++. +++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  104 (565)
T 4gx0_A           25 AFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSM  104 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344455554444    676  99999999999999999999999999999999999999999999988887 5655


Q ss_pred             HHHHH
Q 013211          365 RVDKR  369 (447)
Q Consensus       365 ~~~~~  369 (447)
                      ++...
T Consensus       105 ~~~~~  109 (565)
T 4gx0_A          105 FLAPW  109 (565)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.28  E-value=2.8e-12  Score=127.13  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             ChHHHHHHHHHHH-HHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHH
Q 013211          158 GSQSIVRQAVVLL-ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGF  236 (447)
Q Consensus       158 ~~~~~v~~~~i~l-~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l  236 (447)
                      +++.++..++.++ ++++++|++ |+++++...+...++|.+|+||+++|+|||||||++|.++.||+++++++++|+.+
T Consensus        45 ~~~~ll~~~~~~~~~~~l~fa~l-y~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~  123 (301)
T 1xl4_A           45 SWPVFITLITGLYLVTNALFALA-YLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLG  123 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH-HHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            3444444333333 333455555 77665545555679999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013211          237 VDILLTGMVSYV  248 (447)
Q Consensus       237 ~~~~~~~~~~~l  248 (447)
                      +++.++.+...+
T Consensus       124 ~a~~~g~v~~~~  135 (301)
T 1xl4_A          124 LAVAASLIYARF  135 (301)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988777655

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.27  E-value=1.4e-13  Score=137.84  Aligned_cols=76  Identities=28%  Similarity=0.437  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          294 VVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKR  369 (447)
Q Consensus       294 ~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~~  369 (447)
                      +++++++|+++|++.|+|+|.||+||+++|+|||||||++|.|..||+|+++++++|+++++..++.+++.+.+++
T Consensus        27 ~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  102 (336)
T 1lnq_A           27 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE  102 (336)
T ss_dssp             TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445668899999999999999999999999999999999999999999999999999999999998887776643

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.27  E-value=3.1e-12  Score=126.93  Aligned_cols=77  Identities=21%  Similarity=0.506  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCch------hhHHHHHHHHHHHH
Q 013211          165 QAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV------FSILFVLVGFGFVD  238 (447)
Q Consensus       165 ~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~------f~i~~~l~Gi~l~~  238 (447)
                      .+++.+++++++|+++|+..+       .|+|+||+|||++|+|||||||++|.+..||.      ++++|+++|+++++
T Consensus       201 ~~~~~~~~~l~~ga~~~~~~E-------~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a  273 (309)
T 3um7_A          201 FLLIGCLLFVLTPTFVFCYME-------DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFA  273 (309)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHH-------CCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHH
Confidence            344455677888888887553       59999999999999999999999999999985      99999999999999


Q ss_pred             HHHHHHHHHH
Q 013211          239 ILLTGMVSYV  248 (447)
Q Consensus       239 ~~~~~~~~~l  248 (447)
                      +.++.+++.+
T Consensus       274 ~~~~~i~~~~  283 (309)
T 3um7_A          274 SVLTTIGNWL  283 (309)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9988776654

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.26  E-value=1.2e-11  Score=122.64  Aligned_cols=67  Identities=18%  Similarity=0.175  Sum_probs=57.4

Q ss_pred             HHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          300 IGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARV  366 (447)
Q Consensus       300 ~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~  366 (447)
                      +.+.+|+..++       ++|.||+||+++|+|||||||++|.+..||+++++++++|+++++.+++.+...+.
T Consensus        63 ~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~  136 (301)
T 1xl4_A           63 LFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  136 (301)
T ss_dssp             HHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444655542       78999999999999999999999999999999999999999999999887776553

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.21  E-value=1.8e-11  Score=122.87  Aligned_cols=79  Identities=18%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHh-------ccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 013211          289 LALGVVVLCIGIGVGVMHFVE-------KLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYL  361 (447)
Q Consensus       289 l~l~i~~~~i~~ga~~~~~~e-------~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l  361 (447)
                      +++.++++.+++++++|+...       .++|.||+||+++|+|||||||++|.+..||+++++++++|+++++.+++.+
T Consensus        66 ~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i  145 (333)
T 1p7b_A           66 SLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLV  145 (333)
T ss_dssp             HHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444455566554432       2489999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHH
Q 013211          362 AEARVD  367 (447)
Q Consensus       362 ~~~~~~  367 (447)
                      ...+.+
T Consensus       146 ~~~~~~  151 (333)
T 1p7b_A          146 FARFAR  151 (333)
T ss_dssp             HHHHTS
T ss_pred             HHHHHH
Confidence            766554

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.20  E-value=4.8e-11  Score=119.25  Aligned_cols=57  Identities=25%  Similarity=0.324  Sum_probs=53.1

Q ss_pred             cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD  367 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~  367 (447)
                      ++|.||+||+++|+|||||||++|.+..||+++++++++|+++++.+++.++..+..
T Consensus        77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~  133 (321)
T 2qks_A           77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ  133 (321)
T ss_dssp             TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999988866554

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.17  E-value=6.1e-13  Score=133.09  Aligned_cols=103  Identities=19%  Similarity=0.421  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013211          167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVS  246 (447)
Q Consensus       167 ~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~  246 (447)
                      ++++++++++|+++|+..       +.|+|.+|+||+++|+|||||||++|.|..||+++++++++|+.++++.++.+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~-------e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~   96 (336)
T 1lnq_A           24 LLLVLAVIIYGTAGFHFI-------EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   96 (336)
T ss_dssp             TTTTTTSHHHHTTTTTTS-------SSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455677788888654       3599999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCcceeeeccchh
Q 013211          247 YVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRM  281 (447)
Q Consensus       247 ~l~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~  281 (447)
                      .+.+...+...+..+     .....++..++-++.
T Consensus        97 ~~~~~~~~~~~~~~~-----~~~~~~viI~G~G~~  126 (336)
T 1lnq_A           97 FLINREQMKLMGLID-----VAKSRHVVICGWSES  126 (336)
T ss_dssp             TC----------------------CEEEEESCCHH
T ss_pred             HHHHHHHHHHHhhhh-----hcccCCEEEECCcHH
Confidence            877654443322211     111456777766653

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.12  E-value=3.8e-11  Score=120.91  Aligned_cols=92  Identities=15%  Similarity=0.379  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHH
Q 013211          160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDI  239 (447)
Q Consensus       160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~  239 (447)
                      +.+...+.+++++.++.+++.|.++... .+....+|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++++
T Consensus       127 ~~l~~~~~~~~~~~~~~a~~~~~~e~~~-~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~  205 (355)
T 3beh_A          127 RNLIGVTTLFGVVLFAVALAAYVIERDI-QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL  205 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555566666665432 122235899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013211          240 LLTGMVSYVLDLQ  252 (447)
Q Consensus       240 ~~~~~~~~l~~~~  252 (447)
                      .++.+++.+.+..
T Consensus       206 ~~~~i~~~~~~~~  218 (355)
T 3beh_A          206 WAGILATGFYQEV  218 (355)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877543

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.11  E-value=7.2e-11  Score=117.97  Aligned_cols=58  Identities=24%  Similarity=0.399  Sum_probs=53.8

Q ss_pred             CCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          192 ETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVL  249 (447)
Q Consensus       192 ~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~  249 (447)
                      ..|+|.+|+||+++|+|||||||++|.+..||+++++++++|+.++++.++.+...+.
T Consensus        75 ~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~  132 (321)
T 2qks_A           75 FPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS  132 (321)
T ss_dssp             SSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999999999999999999999999999999988887664

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.03  E-value=2.2e-10  Score=121.47  Aligned_cols=86  Identities=23%  Similarity=0.409  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013211          165 QAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGM  244 (447)
Q Consensus       165 ~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~  244 (447)
                      ++++++++++++|+++|+.+.. .......++.+|+||+++|+|||||||++|.+..||+++++++++|+.+++++++.+
T Consensus       346 ll~~l~i~~~if~~~~~~~e~~-~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI  424 (514)
T 2r9r_B          346 LIFFLFIGVILFSSAVYFAEAD-ERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVI  424 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-CTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHhhhheeecc-CCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHH
Confidence            3444444556667777766543 233455789999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 013211          245 VSYVLDL  251 (447)
Q Consensus       245 ~~~l~~~  251 (447)
                      .+.+...
T Consensus       425 ~~~f~~~  431 (514)
T 2r9r_B          425 VSNFNYF  431 (514)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8766543

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.88  E-value=3.4e-10  Score=110.75  Aligned_cols=59  Identities=12%  Similarity=0.009  Sum_probs=48.7

Q ss_pred             cchhhHHHHHHhhhhccccC-CCc-cCCcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYG-DRA-FKSMPG----RLFASIWLLVSTLAVARAFLYLAEARVDKR  369 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyG-D~~-p~t~~g----r~f~ii~il~G~~~va~~~~~l~~~~~~~~  369 (447)
                      .++.+|+||+++++||+||| |+. |.+..|    +.|+++.++.|+++++.+++.+.+.+.+..
T Consensus       179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~  243 (285)
T 3rvy_A          179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN  243 (285)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999 996 877755    678888888899999999999988876643

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.84  E-value=5.5e-09  Score=104.79  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=49.5

Q ss_pred             chhhHHHHHHhhhhccccCCCccC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          312 GWLDSFYLSVMSVTTVGYGDRAFK--SMPGRLFASIWLLVSTLAVARAFLYLAEARV  366 (447)
Q Consensus       312 s~~ds~Yfs~iTlTTVGyGD~~p~--t~~gr~f~ii~il~G~~~va~~~~~l~~~~~  366 (447)
                      +|.|++||+++|+|||||||++|.  ++.|++++.+-+++|+++++..++.+...+.
T Consensus        91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~s  147 (340)
T 3sya_A           91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKIS  147 (340)
T ss_dssp             STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999996  6789999999999999999998887765443

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.78  E-value=4.9e-09  Score=105.18  Aligned_cols=57  Identities=21%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             CCChhhHHHhheeeeeeeccceeeec--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          193 THPVVDALYFCIVTMCTIGYGDITPR--TVPTKVFSILFVLVGFGFVDILLTGMVSYVL  249 (447)
Q Consensus       193 ~~s~~da~yf~~vtltTIGYGDi~P~--t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~  249 (447)
                      ..++.+|+||+++|+|||||||++|.  ++.|++++.+.+++|+.++++.++.+...+.
T Consensus        89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~s  147 (340)
T 3sya_A           89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKIS  147 (340)
T ss_dssp             CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999999999997  6789999999999999999999887776654

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.78  E-value=1.8e-08  Score=101.13  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=48.9

Q ss_pred             cchhhHHHHHHhhhhccccCCCccC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFK--SMPGRLFASIWLLVSTLAVARAFLYLAEAR  365 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~--t~~gr~f~ii~il~G~~~va~~~~~l~~~~  365 (447)
                      .+|.|++||++.|+|||||||+.|.  ++.|++++.+-+++|+++++..++.+...+
T Consensus        93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~  149 (343)
T 3spc_A           93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKM  149 (343)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999974  789999999999999999998888766444

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.75  E-value=1.1e-08  Score=102.64  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=50.2

Q ss_pred             CCChhhHHHhheeeeeeeccceeeec--CCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013211          193 THPVVDALYFCIVTMCTIGYGDITPR--TVPTKVFSILFVLVGFGFVDILLTGMVSYV  248 (447)
Q Consensus       193 ~~s~~da~yf~~vtltTIGYGDi~P~--t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l  248 (447)
                      ..++.+||||+++|+|||||||++|.  ++.|++++.+-+++|+.++++.++.+...+
T Consensus        92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~  149 (343)
T 3spc_A           92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKM  149 (343)
T ss_dssp             CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999975  889999999999999999999887766554

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.09  E-value=1.5e-06  Score=84.70  Aligned_cols=90  Identities=11%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccc-eee-ecCCCC----chhhHHHHHHHHH
Q 013211          162 IVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYG-DIT-PRTVPT----KVFSILFVLVGFG  235 (447)
Q Consensus       162 ~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYG-Di~-P~t~~g----r~f~i~~~l~Gi~  235 (447)
                      +...++++++++++.+++.+.+..+..+ ....++.+|+||+++++||+||| |+. |.+..|    ++|+++.++.|+.
T Consensus       148 l~~~~~~~~~~~~~fa~~g~~~f~~~~~-~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~  226 (285)
T 3rvy_A          148 MLSVIALMTLFFYIFAIMATQLFGERFP-EWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFV  226 (285)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHH
Confidence            3334444444545555555544433221 22568999999999999999999 996 888866    7788888888999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013211          236 FVDILLTGMVSYVLDLQ  252 (447)
Q Consensus       236 l~~~~~~~~~~~l~~~~  252 (447)
                      ++.++++.+.+.+.+..
T Consensus       227 ~lnl~~aii~~~f~~~~  243 (285)
T 3rvy_A          227 MINLVVAICVDAMAILN  243 (285)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988876543

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}

Probab=96.59  E-value=0.0028  Score=66.52  Aligned_cols=56  Identities=13%  Similarity=0.157  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccc--cCCCcc----CCcchhHHHHHHHHHH
Q 013211          294 VVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVG--YGDRAF----KSMPGRLFASIWLLVS  350 (447)
Q Consensus       294 ~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVG--yGD~~p----~t~~gr~f~ii~il~G  350 (447)
                      .++++++++++... .+.++.+++.=++.+++|||  .|.+.|    -++.+|++.++.|++|
T Consensus       406 y~~~~~~~~~~l~~-~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~G  467 (494)
T 3pjz_A          406 YALVFVVCMLGLIA-TGMDELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFG  467 (494)
T ss_dssp             HHHHHHHHHHHHHH-HSSCHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhccHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHH
Confidence            33344455555544 46899999999999999999  564333    4567899999888887

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=96.49  E-value=0.00047  Score=64.70  Aligned_cols=56  Identities=5%  Similarity=-0.027  Sum_probs=38.0

Q ss_pred             cchhhHHHHHHhhhhccccCCCcc----CCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAF----KSMPGRLFASIWLLVS-TLAVARAFLYLAEARV  366 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p----~t~~gr~f~ii~il~G-~~~va~~~~~l~~~~~  366 (447)
                      .++.+|+|+.+.++||.|++|+..    .++.+.++-+.|+++| ..++..+++.+.+.+.
T Consensus       164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~  224 (229)
T 4dxw_A          164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI  224 (229)
T ss_dssp             SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999743    2334555555555554 4555666666655543

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=94.74  E-value=0.05  Score=59.56  Aligned_cols=56  Identities=20%  Similarity=0.399  Sum_probs=45.2

Q ss_pred             chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          312 GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK  368 (447)
Q Consensus       312 s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~  368 (447)
                      ++.+++||++.+++..| ++..|.+..+|++.++|+++++++.+...+.++..++..
T Consensus       563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~  618 (823)
T 3kg2_A          563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE  618 (823)
T ss_dssp             HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            36789999999999999 788999999999999999999999999999999877653

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=94.70  E-value=0.025  Score=40.99  Aligned_cols=54  Identities=20%  Similarity=0.334  Sum_probs=38.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...+ ..++   .++.+-|++.|.|++|.|+..|+..
T Consensus         6 F~~~D~d~~G~i~~~e~~~~-l~~~~~~~~~---~~~~~~~~~~D~~~~g~i~~~ef~~   60 (66)
T 3li6_A            6 FKEIDVNGDGAVSYEEVKAF-VSKKRAIKNE---QLLQLIFKSIDADGNGEIDQNEFAK   60 (66)
T ss_dssp             HHHHCTTCSSSCCHHHHHHH-HHHHHHHHHH---HHHHHHHHHHCTTCSSSCCHHHHHH
T ss_pred             HHHHCCCCCCcccHHHHHHH-HHHccCCCcH---HHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            34568889999999887654 33332 2333   3455778889999999999998764

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=94.53  E-value=0.049  Score=39.36  Aligned_cols=54  Identities=17%  Similarity=0.340  Sum_probs=40.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +... ...+++++.   .-|++.|.|++|+|+..|...
T Consensus         7 F~~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~---~~~~~~D~~~dg~i~~~ef~~   61 (67)
T 1tiz_A            7 FEKFDKNKDGKLSLDEFREV-ALAFSPYFTQEDIV---KFFEEIDVDGNGELNADEFTS   61 (67)
T ss_dssp             HHHHCTTSSSCEEHHHHHHH-HHHTCTTSCHHHHH---HHHHHHCCSSSSEECHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHHCCCCCCcCcHHHHHH
Confidence            34567889999998887654 4444 456777665   567778999999999998764

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=94.50  E-value=0.052  Score=44.12  Aligned_cols=54  Identities=28%  Similarity=0.454  Sum_probs=41.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... |... .+++++++.++   |++.|.|++|+|+..|.+.
T Consensus        42 F~~~D~d~~G~I~~~El~~~-l~~lg~~~~~~ei~~l---~~~~D~d~dG~I~~~EF~~   96 (100)
T 2lv7_A           42 FKVFDRDGNGFISKQELGTA-MRSLGYMPNEVELEVI---IQRLDMDGDGQVDFEEFVT   96 (100)
T ss_dssp             HHHTCSSCSSCBCHHHHHHH-HHHHTCCCCTTTHHHH---HHHHCSSCSSSBCHHHHHH
T ss_pred             HHHHcCCCCCcCCHHHHHHH-HHHhCCCCCHHHHHHH---HHHHCCCCCCeEeHHHHHH
Confidence            45568899999999887554 4444 46788887754   6677999999999998753

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=94.47  E-value=0.035  Score=42.30  Aligned_cols=58  Identities=21%  Similarity=0.398  Sum_probs=43.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC---CCCHHHHHHHHH-HhhhccCCCCCccChhhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG---KISEKDVMQICH-KFDRLDTGNCGKITLADLMEA  445 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~---ki~~edv~~i~~-~F~~ld~~~~G~l~~~dl~~~  445 (447)
                      +...|.+.+|.++..|+... +...+   ..+++++..+.+ -|++.|.|++|+|+..|....
T Consensus        13 F~~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~   74 (83)
T 1yx7_A           13 FKKLDANGDGYVTALELQTF-MVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNA   74 (83)
T ss_dssp             HHHHSSSCSSSCSHHHHHHH-HHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHh
Confidence            44568899999998886554 44555   577777765332 588899999999999998743

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=94.30  E-value=0.067  Score=47.84  Aligned_cols=58  Identities=28%  Similarity=0.478  Sum_probs=46.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHH--HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLK--EMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~--~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.  ....+++++..++.+-|++.|.|++|+|+.+|...
T Consensus       128 F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~  187 (191)
T 3k21_A          128 FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE  187 (191)
T ss_dssp             HHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHH
Confidence            45568899999999887655322  22467888888888999999999999999999864

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=94.28  E-value=0.029  Score=61.48  Aligned_cols=55  Identities=13%  Similarity=0.386  Sum_probs=45.3

Q ss_pred             ChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          195 PVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD  250 (447)
Q Consensus       195 s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~  250 (447)
                      ++.+++||++.+++..| ++..|.+..+|++.++|+++++.+.....+.+.+++..
T Consensus       563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~  617 (823)
T 3kg2_A          563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV  617 (823)
T ss_dssp             HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            47799999999999998 68899999999999999999999999999999998863

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=94.00  E-value=0.099  Score=48.58  Aligned_cols=88  Identities=9%  Similarity=0.088  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeec----CCCCchhhHHHHHHH-H
Q 013211          160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR----TVPTKVFSILFVLVG-F  234 (447)
Q Consensus       160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~----t~~gr~f~i~~~l~G-i  234 (447)
                      +.+....+++++++.+.|++.+.+.++.. .....++.+|+|+.+.++||.|++|+...    ++.+.++.+.|.++| .
T Consensus       131 ~~l~~~~~~l~~~~~ifa~~g~~lf~~~~-~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~  209 (229)
T 4dxw_A          131 RRVFFVSLLLFIILYIYATMGAILFGNDD-PSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSI  209 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTTS-CTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCC-cccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            34444455555555556666555554332 23456899999999999999999987432    333444444444433 4


Q ss_pred             HHHHHHHHHHHHHH
Q 013211          235 GFVDILLTGMVSYV  248 (447)
Q Consensus       235 ~l~~~~~~~~~~~l  248 (447)
                      .++.++++.+.+.+
T Consensus       210 i~lNlfiavi~~~f  223 (229)
T 4dxw_A          210 TILNLVIAILVDVV  223 (229)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            45555555555443

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=93.83  E-value=0.058  Score=43.30  Aligned_cols=48  Identities=13%  Similarity=0.232  Sum_probs=35.6

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++-.||....     ..+.+....+.+.|+..|.|++|+|+..|+..
T Consensus        19 ~d~~g~i~~~ef~~~~-----~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   66 (110)
T 1pva_A           19 VKAEGSFNHKKFFALV-----GLKAMSANDVKKVFKAIDADASGFIEEEELKF   66 (110)
T ss_dssp             TCSTTCCCHHHHHHHH-----TCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHT
T ss_pred             cCCCCcCcHHHHHHHH-----ccCcchHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3477888888887653     12334556677889999999999999998864

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=93.73  E-value=0.14  Score=40.44  Aligned_cols=54  Identities=22%  Similarity=0.503  Sum_probs=40.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| ..+++++..   -|++.|.|++|+|+.+|...
T Consensus        35 F~~~D~d~~G~I~~~El~~~-l~~~g~~~~~~e~~~---l~~~~D~d~dG~I~~~EF~~   89 (94)
T 2kz2_A           35 FRVEDKDGNGYISAAELRHV-MTNLGEKLTDEEVDE---MIREADIDGDGQVNYEEFVQ   89 (94)
T ss_dssp             HHHHCTTCCSCBCHHHHHHH-HHHHTCCCCHHHHHH---HHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHCCCCcCcCCHHHHHHH-HHHhCCCCCHHHHHH---HHHHhCCCCCCcEeHHHHHH
Confidence            34468889999998887654 44444 678887774   46677899999999998764

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=93.56  E-value=0.047  Score=43.79  Aligned_cols=48  Identities=15%  Similarity=0.172  Sum_probs=34.5

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++-.||....-     .+.+....+.+.|+.+|.|++|+|+..|+..
T Consensus        18 ~d~~g~i~~~eF~~~~~-----~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (109)
T 1rwy_A           18 FTAADSFDHKKFFQMVG-----LKKKSADDVKKVFHILDKDKSGFIEEDELGS   65 (109)
T ss_dssp             TCSTTCCCHHHHHHHHT-----GGGSCHHHHHHHHHHHSTTCSSEECHHHHHT
T ss_pred             cCCCCcEeHHHHHHHHh-----cCcchHHHHHHHHHHHCCCCCCeEcHHHHHH
Confidence            34788888888876531     1233455677889999999999999988763

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=93.51  E-value=0.14  Score=43.10  Aligned_cols=58  Identities=21%  Similarity=0.360  Sum_probs=45.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHH-HhCCCCHHHHHHHHHH-hhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLK-EMGKISEKDVMQICHK-FDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~-~~~ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-. ....++++++..+.+. |+..|.|++|+|+..|...
T Consensus        81 F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~  140 (155)
T 3ll8_B           81 FRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCA  140 (155)
T ss_dssp             HHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            34568899999999987665444 3567899998877665 7779999999999998764

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=93.46  E-value=0.069  Score=46.72  Aligned_cols=53  Identities=13%  Similarity=0.059  Sum_probs=33.5

Q ss_pred             hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +-+++|.++-.||+........+........+.+.|+..|.|++|+|+..||.
T Consensus        56 d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~  108 (159)
T 3i5g_C           56 KKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIR  108 (159)
T ss_dssp             SSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHH
T ss_pred             cccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHHHHH
Confidence            34456677777776654444443333333445677888888888888888875

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=93.46  E-value=0.1  Score=40.84  Aligned_cols=53  Identities=26%  Similarity=0.456  Sum_probs=40.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+.. .+...| ++++++.   +-|+++|.|++|+|+.+|...
T Consensus        33 F~~~D~d~~G~I~~~El~~-~l~~~g-~~~~~~~---~~~~~~D~d~dg~I~~~EF~~   85 (91)
T 2pmy_A           33 FAACDANRSGRLEREEFRA-LCTELR-VRPADAE---AVFQRLDADRDGAITFQEFAR   85 (91)
T ss_dssp             HHHHCTTCSSSEEHHHHHH-HHHHTT-CCHHHHH---HHHHHHCTTCSSEECHHHHTH
T ss_pred             HHHHCCCCCCCCcHHHHHH-HHHHcC-cCHHHHH---HHHHHhCCCCCCCEeHHHHHH
Confidence            3456888999999888654 466667 7777665   557778999999999998764

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}

Probab=93.30  E-value=0.2  Score=52.53  Aligned_cols=20  Identities=20%  Similarity=0.295  Sum_probs=17.8

Q ss_pred             CChhhHHHhheeeeeeeccc
Q 013211          194 HPVVDALYFCIVTMCTIGYG  213 (447)
Q Consensus       194 ~s~~da~yf~~vtltTIGYG  213 (447)
                      -+++||+..++.+++|-||.
T Consensus       205 m~~fdAi~Ha~Sa~~tgGFs  224 (494)
T 3pjz_A          205 MTPFDAISHSFSTIAIGGFS  224 (494)
T ss_dssp             CCSHHHHTTTHHHHTTCCCC
T ss_pred             CcHHHHHHHHHHHHhCCCCC
Confidence            46899999999999999985

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=93.21  E-value=0.079  Score=42.41  Aligned_cols=48  Identities=13%  Similarity=0.167  Sum_probs=35.4

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++..||....  .   .+......+.+.|+..|.|++|+|+..|+..
T Consensus        18 ~d~~g~i~~~eF~~~~--~---~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 1rro_A           18 CQDPDTFEPQKFFQTS--G---LSKMSASQVKDIFRFIDNDQSGYLDGDELKY   65 (108)
T ss_dssp             TCSTTCCCHHHHHHHH--S---GGGSCHHHHHHHHHHHCTTCSSEECTHHHHT
T ss_pred             ccCCCCcCHHHHHHHH--h---cCcccHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            4578888998887653  1   1233455677889999999999999999864

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=93.12  E-value=0.047  Score=44.39  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             hCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          411 MGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       411 ~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...++++++.++.+.|+..|.|++|+|+..||..
T Consensus        27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~   60 (100)
T 2lv7_A           27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGT   60 (100)
T ss_dssp             CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence            3567888999999999999999999999999864

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=93.06  E-value=0.22  Score=41.46  Aligned_cols=56  Identities=20%  Similarity=0.308  Sum_probs=40.1

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHH--HHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEK--DVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~e--dv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||.............+  ....+...|+.+|.|++|.|+..|+..
T Consensus        55 ~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~  112 (153)
T 3ox6_A           55 QINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELRE  112 (153)
T ss_dssp             HHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HhCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            35677888888888877655544444432  245677889999999999999888763

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=92.98  E-value=0.17  Score=44.44  Aligned_cols=55  Identities=20%  Similarity=0.102  Sum_probs=30.6

Q ss_pred             hhhccCCCCcChHHHHHHHHHH------hCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKE------MGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~------~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ..|.+.+|.++..||.......      ........-..+.+.|+..|.|++|+|+.+|+.
T Consensus        72 ~~D~d~dG~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~  132 (191)
T 2ccm_A           72 YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYS  132 (191)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHH
T ss_pred             hcCCCCCCeECHHHHHHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            3456667777777765543222      122233333445566777777777777766654

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=92.91  E-value=0.13  Score=46.21  Aligned_cols=58  Identities=17%  Similarity=0.268  Sum_probs=45.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH-hCCCCHHHHHHHHHH-hhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE-MGKISEKDVMQICHK-FDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~-~~ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.. -..++++++..+.++ |++.|.|++|+|+..|...
T Consensus       119 F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~  178 (208)
T 2ct9_A          119 FRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK  178 (208)
T ss_dssp             HHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred             HHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            445688999999998876543333 346899999887555 8999999999999998764

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=92.86  E-value=0.15  Score=38.13  Aligned_cols=54  Identities=26%  Similarity=0.403  Sum_probs=40.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...|..+++++.   +-|...|.|++|+|+..|...
T Consensus         9 F~~~D~~~~G~i~~~el~~~-l~~~g~~~~~~~~---~~~~~~D~~~dg~i~~~ef~~   62 (78)
T 1k9u_A            9 FKRFDTNGDGKISLSELTDA-LRTLGSTSADEVQ---RMMAEIDTDGDGFIDFNEFIS   62 (78)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHHHTCCHHHHH---HHHHHHCTTCSSSEEHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHhCCCCHHHHH---HHHHHhCCCCCCeEcHHHHHH
Confidence            34467889999998886554 4444578888776   557778999999999998753

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=92.77  E-value=0.088  Score=42.20  Aligned_cols=48  Identities=21%  Similarity=0.102  Sum_probs=34.8

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++-.||....-.     .......+.+.|+..|.|++|+|+..|+..
T Consensus        19 ~D~~g~i~~~eF~~~~~~-----~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   66 (109)
T 3fs7_A           19 CQAADSFNYKSFFSTVGL-----SSKTPDQIKKVFGILDQDKSGFIEEEELQL   66 (109)
T ss_dssp             TCSTTCCCHHHHHHHHTC-----TTCCHHHHHHHHHHHSTTCSSSBCHHHHHT
T ss_pred             cCCCCcCcHHHHHHHHhc-----CCCcHHHHHHHHHHHCCCCCCeEeHHHHHH
Confidence            347888898888765321     223445566889999999999999998864

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=92.76  E-value=0.059  Score=45.61  Aligned_cols=54  Identities=11%  Similarity=0.139  Sum_probs=36.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC--CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG--KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~--ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+.. .+...|  .++++++..+   |++.|.|++|+|+.+|...
T Consensus        46 F~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~e~~~~---~~~~D~d~dG~I~~~EF~~  101 (135)
T 3h4s_E           46 FSLLADPERHLITAESLRR-NSGILGIEGMSKEDAQGM---VREGDLDGDGALNQTEFCV  101 (135)
T ss_dssp             HHHHSBTTTTBBCHHHHHH-HGGGGTCCCCCHHHHHHH---HHHHCSSCSSSBCHHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHH-HHHHhCCCCCCHHHHHHH---HHHhCCCCCCCCcHHHHHH
Confidence            3445677788887777544 345555  6777777644   5556778888888877653

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=92.58  E-value=0.12  Score=38.57  Aligned_cols=54  Identities=17%  Similarity=0.426  Sum_probs=39.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| ..+++++.   +-|.+.|.+++|+|+..|...
T Consensus        13 F~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~---~~~~~~d~~~~g~i~~~eF~~   67 (77)
T 2joj_A           13 FDLFDTNKTGSIDYHELKVA-MRALGFDVKKPEIL---ELMNEYDREGNGYIGFDDFLD   67 (77)
T ss_dssp             HHHHCCSSSSEEEHHHHHHH-HHHHTCCCHHHHHH---HHHHHHCCSSSSEEEHHHHHH
T ss_pred             HHHhCCCCCCCCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHHCCCCCCcCcHHHHHH
Confidence            34567889999998887654 44554 45666655   557778999999999998764

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=92.51  E-value=0.089  Score=42.17  Aligned_cols=48  Identities=15%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++..||....-  .   ..+....+.+.|+..|.|++|.|+..|+..
T Consensus        19 ~d~~g~i~~~eF~~~~~--~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   66 (109)
T 1bu3_A           19 CEAADSFNYKAFFAKVG--L---TAKSADDIKKAFFVIDQDKSGFIEEDELKL   66 (109)
T ss_dssp             TCSTTCCCHHHHHHHHT--G---GGSCHHHHHHHHHHHCTTCSSSEEHHHHHT
T ss_pred             hCCCCcCcHHHHHHHHH--c---ChhhHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            44778888888766431  1   123455666888888888888888888753

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=92.49  E-value=0.26  Score=37.61  Aligned_cols=55  Identities=9%  Similarity=0.062  Sum_probs=40.8

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+.. .+...| ..++++...+.+-|.+.|.|++|+|+. |...
T Consensus        21 ~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~   76 (86)
T 1j7q_A           21 DIFDRNAENIAPVSDTMD-MLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLT   76 (86)
T ss_dssp             HHHSTTTTSCBCHHHHHH-HHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHH
T ss_pred             HHhCCCCCCcCcHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHH
Confidence            445788899999888654 455555 567777444557788899999999999 8753

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=92.38  E-value=0.22  Score=42.18  Aligned_cols=53  Identities=25%  Similarity=0.346  Sum_probs=41.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+.. .+...| ++++++.   +-|+..|.|++|+|+..|+..
T Consensus       104 F~~~D~d~~G~i~~~E~~~-~l~~~~-~~~~~~~---~~~~~~D~d~dg~i~~~ef~~  156 (166)
T 3akb_A          104 LGVADTDGDGAVTVADTAR-ALTAFG-VPEDLAR---QAAAALDTDGDGKVGETEIVP  156 (166)
T ss_dssp             HHHHCSSSSSCCBHHHHHH-HHHHTT-CCHHHHH---HHHHHHCTTCSSBCCHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHH-HHHHhC-CCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            4456889999999988755 456667 8888877   456677999999999998764

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=92.36  E-value=0.14  Score=45.74  Aligned_cols=57  Identities=21%  Similarity=0.440  Sum_probs=44.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh--CCCCHHHHHHHHHH-hhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM--GKISEKDVMQICHK-FDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~--~ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...  ..++++++..+.++ |++.|.|++|+|+.+|...
T Consensus       120 F~~~D~d~dG~Is~~El~~~-l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~  179 (202)
T 2bec_A          120 FQLYDLDRDGKISRHEMLQV-LRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK  179 (202)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHH
T ss_pred             HHHhCCCCCCeEcHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence            44568899999999887654 4444  45889999877664 7779999999999999864

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=92.32  E-value=0.22  Score=42.66  Aligned_cols=55  Identities=15%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..   -|+..|.|++|+|+.+|...
T Consensus       107 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~---~~~~~D~~~dg~i~~~eF~~  161 (169)
T 3qrx_A          107 FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQE---MIAEADRNDDNEIDEDEFIR  161 (169)
T ss_dssp             HHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHH---HHHHHCCSSSSCBCHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHH---HHHHhCCCCCCCEeHHHHHH
Confidence            45568899999999887665333335788888774   47777999999999999764

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=92.31  E-value=0.3  Score=38.79  Aligned_cols=55  Identities=11%  Similarity=0.268  Sum_probs=41.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++.   +-|.+.|.|++|+|+..|...
T Consensus        30 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~---~l~~~~d~~~~g~i~~~eF~~   84 (105)
T 1wlz_A           30 FENFDTMKTNTISREEFRAICNRRVQILTDEQFD---RLWNEMPVNAKGRLKYPDFLS   84 (105)
T ss_dssp             HHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHH---HHHTTSCBCTTSCBCHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH---HHHHHcCCCCCCCCcHHHHHH
Confidence            4456888999999998765533333467888776   557778999999999998763

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=92.22  E-value=0.15  Score=40.73  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=33.3

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++-.||+...-  .   ..+....+.+.|+..|.|++|.|+..|+..
T Consensus        18 ~d~~g~i~~~eF~~~~~--~---~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   65 (109)
T 5pal_A           18 FKDPGTFDYKRFFHLVG--L---KGKTDAQVKEVFEILDKDQSGFIEEEELKG   65 (109)
T ss_dssp             TCSTTCCCHHHHHHHHT--C---TTCCHHHHHHHHHHHCTTCSSEECHHHHHT
T ss_pred             hCCCCcCcHHHHHHHHh--h---ccCcHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            44588888888766431  1   123344566888888999999999888753

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=92.21  E-value=0.18  Score=44.74  Aligned_cols=53  Identities=23%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||...   ......+.....+.+.|+.+|.|++|.|+.+|+..
T Consensus        81 ~~D~d~dg~i~~~ef~~~---~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~  133 (204)
T 3e3r_A           81 KWDRNGSGTLDLEEFLRA---LRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRG  133 (204)
T ss_dssp             HHCTTCSSSBCHHHHHHH---TSCCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhccCCCCcCcHHHHHHH---HHhhcCchHHHHHHHHHHHhCcCCCCeEeHHHHHH
Confidence            346788899999988765   23344555666788899999999999999999864

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=92.17  E-value=0.14  Score=40.93  Aligned_cols=48  Identities=15%  Similarity=0.180  Sum_probs=33.9

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++..||....  ..   .+.....+.+.|+..|.|++|.|+..|+..
T Consensus        18 ~d~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 2pvb_A           18 CSAADSFKHKEFFAKV--GL---ASKSLDDVKKAFYVIDQDKSGFIEEDELKL   65 (108)
T ss_dssp             TCSTTCCCHHHHHHHH--TG---GGSCHHHHHHHHHHHCTTCSSSBCHHHHHT
T ss_pred             hCCCCcCcHHHHHHHH--hC---ChhHHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence            4477888888887653  11   123345667888888999999999888764

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=92.16  E-value=0.11  Score=44.08  Aligned_cols=52  Identities=15%  Similarity=0.083  Sum_probs=27.8

Q ss_pred             hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      |.+.+|.++..||+......... .......+.+.|+.+|.|++|.|+..|+.
T Consensus        56 D~~~~g~i~~~eF~~~~~~~~~~-~~~~~~~l~~~F~~~D~d~~G~I~~~el~  107 (156)
T 1wdc_C           56 HKMGEKSLPFEEFLPAYEGLMDC-EQGTFADYMEAFKTFDREGQGFISGAELR  107 (156)
T ss_dssp             SSTTSCEECHHHHHHHHHHHTTS-CCCCHHHHHHHHHTTCSSSSSEEEHHHHH
T ss_pred             CCCCCCeeeHHHHHHHHHHHhhc-cCChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            44556666666665554443331 11112334456666666777777666654

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=92.15  E-value=0.13  Score=39.24  Aligned_cols=54  Identities=26%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+.. .+...|..+++++.   +-|++.|.|++|+|+..|...
T Consensus        17 F~~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~---~~~~~~D~~~dg~i~~~eF~~   70 (86)
T 2opo_A           17 FKRFDTNGDGKISSSELGD-ALKTLGSVTPDEVR---RMMAEIDTDGDGFISFDEFTD   70 (86)
T ss_dssp             HHHHCTTCSSEEEHHHHHH-HHHTTTTCCHHHHH---HHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHHCCCCCCCcCHHHHHH-HHHHcCCCCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            3446788999998888654 45556677877766   557777999999999998763

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=92.13  E-value=0.18  Score=44.36  Aligned_cols=53  Identities=25%  Similarity=0.360  Sum_probs=41.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| ++++++.   +-|+++|.|++|+|+..|+..
T Consensus       115 F~~~D~d~dG~I~~~E~~~~-l~~~g-~~~~~~~---~~~~~~D~d~dG~i~~~Ef~~  167 (191)
T 2ccm_A          115 FDVNDTSGDNIIDKHEYSTV-YMSYG-IPKSDCD---AAFDTLSDGGKTMVTREIFAR  167 (191)
T ss_dssp             HHHHCTTCSSBCCHHHHHHH-HHTTT-CCHHHHH---HHHHHHTTTTTSCCBHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHH-HHHhC-CCHHHHH---HHHHHhCCCCCCCcCHHHHHH
Confidence            45578899999999987654 45556 7777766   667888999999999999864

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=92.12  E-value=0.19  Score=42.72  Aligned_cols=54  Identities=20%  Similarity=0.383  Sum_probs=41.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|+....-..-.+++++++..+   |++.|.|++|+|+..|.+
T Consensus        89 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l---~~~~D~d~dG~I~~~EF~  142 (148)
T 2lmt_A           89 FKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEM---IREADFDGDGMINYEEFV  142 (148)
T ss_dssp             HHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHH---HHHHCCSCCSSEEHHHHH
T ss_pred             HHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            455788999999999876543344467888888755   666799999999999875

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=92.09  E-value=0.1  Score=45.23  Aligned_cols=63  Identities=14%  Similarity=0.082  Sum_probs=32.4

Q ss_pred             cccchhHHHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          379 GQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       379 ~~~~t~~~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...+..++.....+.++.++-.+|+......+.....  -..+.+.|+..|.|++|+|+..||.
T Consensus        46 g~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~--~~~l~~aF~~fD~d~~G~I~~~el~  108 (153)
T 3i5g_B           46 GRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDP--EDALRNAFSMFDEDGQGFIPEDYLK  108 (153)
T ss_dssp             TSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCC--HHHHHHHHHTTCSSCSSCCCHHHHH
T ss_pred             CCCccHHHHHHHHHhccCCccHHHHHHHHHhhhccccc--HHHHHHHHhccccCCCCeEeHHHHH
Confidence            34444445555555555555655555443322222211  1234466777777777777766664

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=92.07  E-value=0.29  Score=40.67  Aligned_cols=55  Identities=18%  Similarity=0.308  Sum_probs=42.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHH-HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLK-EMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~-~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+....-. ....++++++..+   |++.|.|++|+|+..|...
T Consensus        94 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~~  149 (153)
T 3ox6_A           94 FREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEI---IRDVDLNGDGRVDFEEFVR  149 (153)
T ss_dssp             HHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHH---HHHHCSSSSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            44568899999999997665444 3456888887755   6667999999999999865

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=91.99  E-value=0.071  Score=42.70  Aligned_cols=48  Identities=21%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+|.++-.||....  .   ........+.+.|+.+|.|++|.|+..|+..
T Consensus        18 ~d~~g~i~~~eF~~~~--~---~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 2kyc_A           18 CQAPDSFSPKKFFQIS--G---MSKKSSSQLKEIFRILDNDQSGFIEEDELKY   65 (108)
T ss_dssp             SCSTTTCCHHHHHHHH--T---CTTCCSSSHHHHCSSSCSCCSSCCCGGGTTT
T ss_pred             cCCCCcCCHHHHHHHH--h---hCcccHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            4588889999987653  1   1223345667889999999999999999864

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=91.98  E-value=0.089  Score=41.64  Aligned_cols=29  Identities=10%  Similarity=0.131  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          415 SEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       415 ~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ++++..++.+.|+.+|.|++|+|+.+|+.
T Consensus         4 s~~~~~~~~~~F~~~D~d~dG~I~~~el~   32 (92)
T 1fi6_A            4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAK   32 (92)
T ss_dssp             CHHHHHHHHHHHTTTCCSTTCEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            44555555555555555555555555543

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=91.93  E-value=0.16  Score=43.94  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=37.0

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCC------CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGK------ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~k------i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||..........      ..+.....+.+.|+..|.|++|.|+.+|+..
T Consensus        67 ~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~  129 (185)
T 2sas_A           67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQN  129 (185)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHH
T ss_pred             HhcCCCCCCeEcHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHH
Confidence            34577888888888876654333221      1112234566778888888888888888764

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=91.92  E-value=0.15  Score=42.94  Aligned_cols=54  Identities=20%  Similarity=0.404  Sum_probs=39.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++.++   |++.|.|++|+|+..|...
T Consensus        85 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~---~~~~D~d~dG~I~~~eF~~  139 (143)
T 2obh_A           85 FKLFDDDETGKISFKNLKRV-AKELGENLTDEELQEM---IDEADRDGDGEVSEQEFLR  139 (143)
T ss_dssp             HHHHCTTCSSSBCHHHHHHH-HHHTTCCCCHHHHHHH---HHHHCTTSSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHHH
Confidence            44567888898888876543 45554 6788887755   5667889999999888754

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=91.87  E-value=0.087  Score=38.52  Aligned_cols=53  Identities=15%  Similarity=0.317  Sum_probs=39.0

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+... +...| ..+++++.   +-|++.|.+++|+|+..|...
T Consensus        13 ~~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~---~~~~~~d~~~~g~i~~~eF~~   66 (71)
T 2b1u_A           13 RAFDQDGDGHITVDELRRA-MAGLGQPLPQEELD---AMIREADVDQDGRVNYEEFAR   66 (71)
T ss_dssp             TTSCCSSSSEEEHHHHHHH-GGGTTCSSCHHHHH---HHHHHCCSSSSSEEETTHHHH
T ss_pred             HHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            4467888999988886543 44443 56777665   567788999999999998764

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=91.84  E-value=0.098  Score=44.94  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=42.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh---------CCCCHHHHHHHH-HHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM---------GKISEKDVMQIC-HKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~---------~ki~~edv~~i~-~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...         ..++++++.++. +.|++.|.|++|+|+.+|+..
T Consensus        74 F~~~D~d~dG~I~~~El~~~-l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~  140 (143)
T 3a4u_B           74 FKMHDYDGNNLLDGLELSTA-ITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAK  140 (143)
T ss_dssp             HHHTCTTCSSCEEHHHHHHT-CC-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC
T ss_pred             HHHhCCCCCCccCHHHHHHH-HHHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHH
Confidence            45568899999998887543 3222         368888887775 457999999999999999764

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=91.79  E-value=0.29  Score=41.16  Aligned_cols=54  Identities=19%  Similarity=0.360  Sum_probs=40.5

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++-.||+........  .......+.+.|+..|.|++|+|+..||..
T Consensus        50 ~~d~~~~g~i~~~eF~~~~~~~~~--~~~~~~~l~~~F~~~D~d~~G~I~~~el~~  103 (143)
T 2obh_A           50 EIDKEGTGKMNFGDFLTVMTQKMS--EKDTKEEILKAFKLFDDDETGKISFKNLKR  103 (143)
T ss_dssp             HHTTTCCSEEEHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HhCCCCCCeeeHHHHHHHHHHHhc--cccHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            457788899999998766443322  123446678899999999999999999863

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=91.75  E-value=0.21  Score=38.59  Aligned_cols=54  Identities=19%  Similarity=0.367  Sum_probs=40.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| ..+++++..   -|++.|.|++|+|+..|...
T Consensus        26 F~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~---l~~~~D~~~dg~i~~~eF~~   80 (90)
T 1avs_A           26 FDMFDADGGGDISTKELGTV-MRMLGQNPTKEELDA---IIEEVDEDGSGTIDFEEFLV   80 (90)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHTTCCCCHHHHHH---HHHHHCTTCCSSEEHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHhCCCCCCeEeHHHHHH
Confidence            34467889999998886554 44554 567777764   56777999999999998763

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=91.73  E-value=0.19  Score=43.40  Aligned_cols=58  Identities=14%  Similarity=0.252  Sum_probs=44.3

Q ss_pred             Hhhh-hccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHH--------hhhccCCCCCccChhhhhh
Q 013211          387 FLAA-DIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHK--------FDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~-did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~--------F~~ld~~~~G~l~~~dl~~  444 (447)
                      +... |.+.+|.++..|+....-...    ...+++++..+...        |+..|.|++|+|+..|+..
T Consensus        14 F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~   84 (185)
T 2sas_A           14 FDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLA   84 (185)
T ss_dssp             HHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHHH
Confidence            3456 889999999999765433222    47788888877644        9999999999999999863

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=91.68  E-value=0.26  Score=43.98  Aligned_cols=57  Identities=23%  Similarity=0.319  Sum_probs=44.3

Q ss_pred             hhhhccCCCCcChHHHHHHHH---HH-hCCCCHHHHHHHH-HHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKL---KE-MGKISEKDVMQIC-HKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L---~~-~~ki~~edv~~i~-~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+....-   .. ...++++++..+. +.|++.|.|++|+|+.+|+..
T Consensus       118 ~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~  179 (207)
T 2ehb_A          118 KLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKD  179 (207)
T ss_dssp             HHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            456889999999998765431   22 4578889887764 569999999999999999764

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=91.51  E-value=0.2  Score=38.25  Aligned_cols=54  Identities=26%  Similarity=0.433  Sum_probs=40.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...+ ..+++++.   +-|++.|.+++|+|+..|...
T Consensus        29 F~~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~---~l~~~~d~~~~g~i~~~eF~~   83 (87)
T 1s6j_A           29 FKMIDTDNSGTITFDELKDG-LKRVGSELMESEIK---DLMDAADIDKSGTIDYGEFIA   83 (87)
T ss_dssp             HHHHCTTCSSCEEHHHHHHH-HHTTTSSCCHHHHH---HHHHHHCTTCSSEECHHHHTT
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            45567889999998886554 44444 57777776   456777999999999998764

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=91.44  E-value=0.24  Score=45.38  Aligned_cols=58  Identities=22%  Similarity=0.362  Sum_probs=44.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHH---HHh-CCCCHHHHHHHH-HHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKL---KEM-GKISEKDVMQIC-HKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L---~~~-~ki~~edv~~i~-~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-   ... ..++++++..+. +.|++.|.|++|+|+.+|+..
T Consensus       128 F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~  190 (226)
T 2zfd_A          128 FQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRS  190 (226)
T ss_dssp             HHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHH
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3456889999999988765432   233 478888887775 569999999999999999863

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=91.38  E-value=0.18  Score=46.10  Aligned_cols=57  Identities=18%  Similarity=0.387  Sum_probs=43.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh------CCCCHHHHHHHH-HHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM------GKISEKDVMQIC-HKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~------~ki~~edv~~i~-~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...      ..++++++..+. +-|++.|.|++|+|+.+|...
T Consensus       135 F~~~D~d~dG~Is~~El~~~-l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~~  198 (214)
T 2l4h_A          135 FRIFDFDDDGTLNREDLSRL-VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH  198 (214)
T ss_dssp             HHHHCTTCSSCBCHHHHHHH-HHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHH-HHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            34568899999999887554 3333      268888887644 458999999999999998764

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=91.35  E-value=0.32  Score=41.69  Aligned_cols=56  Identities=11%  Similarity=0.120  Sum_probs=41.8

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCH---H--HHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISE---K--DVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~---e--dv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||.............   +  .-..+.+.|+..|.|++|.|+..|+..
T Consensus        66 ~~D~d~dg~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~  126 (176)
T 1nya_A           66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAA  126 (176)
T ss_dssp             HHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence            4577889999999998776555555443   1  124567889999999999999998863

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=91.32  E-value=0.21  Score=42.09  Aligned_cols=55  Identities=24%  Similarity=0.472  Sum_probs=38.8

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      -+...|.+.+|.++..|+... +...| .++++++..+   |++.|.|++|+|+..|.+.
T Consensus        88 ~F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~---~~~~d~d~dg~i~~~eF~~  143 (148)
T 1exr_A           88 AFKVFDRDGNGLISAAELRHV-MTNLGEKLTDDEVDEM---IREADIDGDGHINYEEFVR  143 (148)
T ss_dssp             HHHHHSTTCSSCBCHHHHHHH-HHHTTCCCCHHHHHHH---HHHHCSSSSSSBCHHHHHH
T ss_pred             HHHHhCCCCCCcCCHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHHH
Confidence            345567888888888876544 44444 6778777755   5566888999999888753

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=91.31  E-value=0.26  Score=41.34  Aligned_cols=55  Identities=22%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||+...........  ....+...|+..|.|++|.|+..|+..
T Consensus        45 ~~~D~~~~g~i~~~ef~~~~~~~~~~~~--~~~~~~~~F~~~D~d~~G~i~~~e~~~   99 (155)
T 3ll8_B           45 DIFDTDGNGEVDFKEFIEGVSQFSVKGD--KEQKLRFAFRIYDMDKDGYISNGELFQ   99 (155)
T ss_dssp             HHHCTTCSSSBCHHHHHHHHGGGCSSCC--HHHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HHHCCCCCCcCcHHHHHHHHHHHcccCC--HHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            4467788999999998876543333322  234567889999999999999999854

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=91.31  E-value=0.11  Score=43.12  Aligned_cols=50  Identities=16%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+.+|.++..|+....-.....++++++..+   |+++|. ++|+|+..|..
T Consensus        85 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~---~~~~d~-~dg~i~~~eF~  134 (140)
T 1ggw_A           85 FDKDATGMIGVGELRYVLTSLGEKLSNEEMDEL---LKGVPV-KDGMVNYHDFV  134 (140)
T ss_dssp             TCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHH---HHHTTC-SSCCSTTTHHH
T ss_pred             hCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHH---HHhccC-CCCcEeHHHHH
Confidence            344555555555544332222234454444433   333344 55555555543

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=91.30  E-value=0.25  Score=38.20  Aligned_cols=54  Identities=24%  Similarity=0.485  Sum_probs=40.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++.   +-|...|.|++|.|+..|...
T Consensus        15 F~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~---~l~~~~d~~~dg~i~~~eF~~   69 (92)
T 2kn2_A           15 FKVFDKDQNGYISASELRHV-MINLGEKLTDEEVE---QMIKEADLDGDGQVNYEEFVK   69 (92)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHTTCCCCHHHHH---HHHHHHCSSCCSSEEHHHHHH
T ss_pred             HHHHCCCCCCeEcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCcEeHHHHHH
Confidence            34457888999998886544 55555 57777776   456677999999999998763

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=91.22  E-value=0.29  Score=41.38  Aligned_cols=54  Identities=24%  Similarity=0.477  Sum_probs=41.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++..   -|+..|.|++|+|+..|...
T Consensus       102 F~~~D~d~~G~I~~~e~~~~-l~~~g~~~~~~~~~~---~~~~~d~~~dg~i~~~eF~~  156 (162)
T 1top_A          102 FRIFDKNADGFIDIEELGEI-LRATGEHVTEEDIED---LMKDSDKNNDGRIDFDEFLK  156 (162)
T ss_dssp             HHHHCTTCSSCBCHHHHHHH-HHTTTCCCCHHHHHH---HHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHhCCCCCCcCcHHHHHH
Confidence            44568899999999987665 34444 678887764   46777999999999998764

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=91.18  E-value=0.17  Score=43.07  Aligned_cols=53  Identities=26%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCC-CHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKI-SEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki-~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||........... .++   .+.+.|+..|.|++|.|+..||..
T Consensus        54 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~---~l~~aF~~~D~d~~G~I~~~El~~  107 (148)
T 2lmt_A           54 EAENNNNGQLNFTEFCGIMAKQMRETDTEE---EMREAFKIFDRDGDGFISPAELRF  107 (148)
T ss_dssp             HHHTTSTTEEEHHHHHHHHHHTTTTTTTHH---HHHHHHHHHHSSCSSEECHHHHHH
T ss_pred             hcccCCCCcccHHHHHHHHHHHhcccCcHH---HHHHHHHHHCCCCcCcCcHHHHHH
Confidence            45778888889988877655444433 334   456889999999999999999863

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=91.15  E-value=0.11  Score=41.53  Aligned_cols=29  Identities=14%  Similarity=0.077  Sum_probs=15.4

Q ss_pred             CHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          415 SEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       415 ~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ++++..++.+.|+.+|.|++|+|+.+|+.
T Consensus         5 s~~~~~~~~~~F~~~D~d~dG~I~~~el~   33 (95)
T 1c07_A            5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVR   33 (95)
T ss_dssp             CSHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence            33445555555555555555555555543

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=91.14  E-value=0.24  Score=39.49  Aligned_cols=55  Identities=18%  Similarity=0.246  Sum_probs=40.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH---hCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE---MGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~---~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-..   ...++++++..+   |++.|.|++|+|+..|...
T Consensus        47 F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~~  104 (109)
T 5pal_A           47 FEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKAL---LAAGDSDHDGKIGADEFAK  104 (109)
T ss_dssp             HHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            344678899999988875543232   456788887744   6677999999999998763

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=91.09  E-value=0.2  Score=41.50  Aligned_cols=53  Identities=15%  Similarity=0.384  Sum_probs=35.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++..+   |++.| |++|+|+..|...
T Consensus        85 F~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~~---~~~~d-~~dg~i~~~eF~~  138 (142)
T 2bl0_C           85 FRTFDPEGTGYIPKAALQDA-LLNLGDRLKPHEFAEF---LGITE-TEKGQIRYDNFIN  138 (142)
T ss_dssp             HHHTCCSSCSCEEHHHHHHH-HHHSSSCCCHHHHHHH---HHHHC-CSSSEECSHHHHT
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHcCCCCCHHHHHHH---HHHhC-CCCCcEeHHHHHH
Confidence            44557777888877776544 44444 5677776644   55556 7888888887654

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=91.06  E-value=0.06  Score=45.34  Aligned_cols=53  Identities=25%  Similarity=0.367  Sum_probs=32.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| +++++++..   -|++.| |++|+|+..|...
T Consensus        93 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~---~~~~~d-~~dg~i~~~eF~~  146 (151)
T 1w7j_B           93 FRVFDKEGNGKVMGAELRHV-LTTLGEKMTEEEVET---VLAGHE-DSNGCINYEAFLK  146 (151)
T ss_dssp             HHTTCTTSSSEEEHHHHHHH-HHHSSSCCCHHHHHH---HHTTCC-CTTSEEEHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHH-HHHcCCCCCHHHHHH---HHHhcc-CCCCeEeHHHHHH
Confidence            44556677777777666544 34443 466666553   355667 7777777776653

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=91.06  E-value=0.37  Score=40.44  Aligned_cols=55  Identities=22%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||..........  ......+.+.|+..|.|++|.|+..|+..
T Consensus        53 ~~~d~~~~g~i~~~eF~~~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~el~~  107 (148)
T 1exr_A           53 NEVDADGNGTIDFPEFLSLMARKMKE--QDSEEELIEAFKVFDRDGNGLISAAELRH  107 (148)
T ss_dssp             HHHCTTCSSSEEHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSTTCSSCBCHHHHHH
T ss_pred             HHHCCCCCCcCcHHHHHHHHHhcccC--CCcHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            34577888999999987664433221  23445677899999999999999999863

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=91.00  E-value=0.28  Score=43.78  Aligned_cols=54  Identities=20%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||...........++++   +.+.|+..|.|++|.|+.+|+..
T Consensus        66 ~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~---~~~~F~~~D~d~~G~I~~~E~~~  119 (204)
T 1jba_A           66 RAFDTNGDNTIDFLEYVAALNLVLRGTLEHK---LKWTFKIYDKDRNGCIDRQELLD  119 (204)
T ss_dssp             HHHCCSSSSEECHHHHHHHHHHHSSCCCTHH---HHHHHHHHCSSCSSCBCHHHHHH
T ss_pred             HHHcCCCCCeEeHHHHHHHHHHHccCCHHHH---HHHHHHHhCCCCCCcCcHHHHHH
Confidence            3457788999999998876554444445454   45789999999999999999864

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=90.96  E-value=0.17  Score=45.12  Aligned_cols=57  Identities=14%  Similarity=0.049  Sum_probs=42.4

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhC--------------CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMG--------------KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~--------------ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||+........              +........+...|+.+|.|++|.|+..|+..
T Consensus        68 ~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~  138 (202)
T 2bec_A           68 ESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQ  138 (202)
T ss_dssp             HTTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            3467788999999999776433332              01334556778899999999999999999864

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=90.90  E-value=0.4  Score=37.07  Aligned_cols=54  Identities=17%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             hhhh-ccCCC-CcChHHHHHHHHH-----HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAAD-IDNNG-FVSKSEYVIYKLK-----EMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~d-id~~g-~vs~~ef~~~~L~-----~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...| .+.+| .++..|+....-.     .....+++++..+   |++.|.|++|+|+..|...
T Consensus        16 ~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~~   76 (93)
T 1k2h_A           16 HAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKI---MKELDENGDGEVDFQEFVV   76 (93)
T ss_dssp             HHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHH---HHHHHHCTTSCCCHHHHHH
T ss_pred             HHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            4457 68899 9999887654322     3356788887754   5666889999999998753

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=90.83  E-value=0.29  Score=40.65  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..+   |++ |.|++|+|+..|...
T Consensus        91 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~---~~~-d~~~dg~i~~~eF~~  144 (149)
T 2mys_C           91 LRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEEL---MKG-QEDSNGCINYEAFVK  144 (149)
T ss_pred             HHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHH---Hhh-CCCCCCcEeHHHHHH
Confidence            344566777777777765543222334666666544   555 777778877777653

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=90.78  E-value=0.17  Score=44.10  Aligned_cols=54  Identities=19%  Similarity=0.227  Sum_probs=40.6

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+++|.++..||...........+++   .+...|+..|.|++|.|+.+|+..
T Consensus        63 ~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~---~~~~~f~~~D~d~~G~i~~~e~~~  116 (183)
T 1s6c_A           63 NAFDTTQTGSVKFEDFVTALSILLRGTVHE---KLRWTFNLYDINKDGYINKEEMMD  116 (183)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHHCCHHH---HHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHhCCCCCCcEeHHHHHHHHHHHcCCCHHH---HHHHHHHHhCCCCCCeEcHHHHHH
Confidence            346778899999999877654443333333   455789999999999999999864

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=90.77  E-value=0.28  Score=41.93  Aligned_cols=55  Identities=15%  Similarity=0.257  Sum_probs=41.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..+   |+..|.|++|+|+..|...
T Consensus       101 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~---~~~~D~d~dg~I~~~eF~~  155 (166)
T 2mys_B          101 FKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNM---WAAFPPDVAGNVDYKNICY  155 (166)
T ss_pred             HHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHH---HHhcCCCCCCeEeHHHHHH
Confidence            445688999999999876653333346888887755   5667999999999998764

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=90.77  E-value=0.19  Score=41.71  Aligned_cols=55  Identities=11%  Similarity=0.252  Sum_probs=40.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..   -|++.|.|++|+|+..|...
T Consensus        82 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~---~~~~~D~d~dg~i~~~eF~~  136 (143)
T 3j04_B           82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDE---MYREAPIDKKGNFNYVEFTR  136 (143)
T ss_dssp             HTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHH---HHHHTTCCSSSCCCSTHHHH
T ss_pred             HHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHH---HHHHcCCCCCCcCcHHHHHH
Confidence            44567889999999887655333334678887774   46677999999999998764

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=90.76  E-value=0.25  Score=41.74  Aligned_cols=54  Identities=24%  Similarity=0.376  Sum_probs=28.0

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCC-CCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGK-ISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~k-i~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+.+|.++..||.......... ........+.+.|+..|.|++|.|+..|+.
T Consensus        64 ~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~El~  118 (161)
T 1dtl_A           64 VDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELK  118 (161)
T ss_dssp             HCTTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSEEEHHHHG
T ss_pred             hCCCCCCeEcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            355566666666665543333220 011223344566666666666666666654

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=90.73  E-value=0.24  Score=44.79  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=40.2

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||............+   ..+.+.|+.+|.|++|.|+.+|+..
T Consensus        65 ~~D~d~dG~I~~~Ef~~~~~~~~~~~~~---~~l~~~F~~~D~d~~G~I~~~E~~~  117 (211)
T 2ggz_A           65 TFDTNKDGFVDFLEFIAAVNLIMQEKME---QKLKWYFKLYDADGNGSIDKNELLD  117 (211)
T ss_dssp             HHCTTCSSEEEHHHHHHHHHHHSCSSHH---HHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHcCCCCCeEeHHHHHHHHHHhccCchH---HHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            4577889999999988765444333333   3456789999999999999999864

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=90.71  E-value=0.12  Score=45.37  Aligned_cols=51  Identities=16%  Similarity=0.300  Sum_probs=28.3

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ...|.+.+|.++..|+... +. ...++++++..   -|++.|.|++|+|+.+|..
T Consensus       130 ~~~D~d~~G~I~~~E~~~~-l~-~~~~~~~~~~~---~~~~~D~~~dg~i~~~eF~  180 (191)
T 3khe_A          130 QQFDSDGSGKITNEELGRL-FG-VTEVDDETWHQ---VLQECDKNNDGEVDFEEFV  180 (191)
T ss_dssp             HHHCTTCSSEECHHHHHHH-TT-SSCCCHHHHHH---HHHHHCTTCSSSEEHHHHH
T ss_pred             HHHCCCCcCcCCHHHHHHH-Hc-cCCCCHHHHHH---HHHHhCCCCCCCCCHHHHH
Confidence            3445566666666665433 11 44555555553   3555566677777766654

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=90.65  E-value=0.31  Score=41.03  Aligned_cols=55  Identities=18%  Similarity=0.146  Sum_probs=29.1

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||........  ........+.+.|+..|.|++|+|+..|+..
T Consensus        10 ~~~D~d~~G~I~~~EF~~~~~~~~--~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   64 (135)
T 3h4s_E           10 LETTSTTKMETKYEDMLPVMAEKM--DVEEFVSELCKGFSLLADPERHLITAESLRR   64 (135)
T ss_dssp             ---------CCCC-------------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHHH
T ss_pred             HHHcCCCCCcEeHHHHHHHHHHHc--cccchHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence            346778899999999876644333  3355667788999999999999999999864

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=90.61  E-value=0.26  Score=42.12  Aligned_cols=54  Identities=28%  Similarity=0.443  Sum_probs=40.4

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||+........  .......+.+.|+.+|.|++|.|+.+|+..
T Consensus        72 ~~d~~~~g~i~~~eF~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~G~i~~~el~~  125 (169)
T 3qrx_A           72 EIDKDGSGTIDFEEFLTMMTAKMG--ERDSREEILKAFRLFDDDNSGTITIKDLRR  125 (169)
T ss_dssp             HHCSSSSSSEEHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HhcCCCCCcCCHHHHHHHHHHHhc--ccCcHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            357788999999998776443321  122345677889999999999999999864

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=90.59  E-value=0.32  Score=41.01  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..   -|++.|.|++|+|+..|...
T Consensus        97 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~---~~~~~D~d~dg~i~~~eF~~  151 (158)
T 2jnf_A           97 FRLYDKEGNGYISTDVMREILAELDETLSSEDLDA---MIDEIDADGSGTVDFEEFMG  151 (158)
T ss_dssp             HHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHH---HHHHHCSSCCSEECSHHHHH
T ss_pred             HHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHH---HHHHhCCCCCCcEeHHHHHH
Confidence            45568899999999887665333334678888774   46677999999999998764

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=90.56  E-value=0.3  Score=38.86  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...    ...+++++..   -|++.|.|++|+|+..|...
T Consensus        47 F~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~~---~~~~~D~~~dg~i~~~eF~~  104 (109)
T 1rwy_A           47 FHILDKDKSGFIEEDELGSI-LKGFSSDARDLSAKETKT---LMAAGDKDGDGKIGVEEFST  104 (109)
T ss_dssp             HHHHSTTCSSEECHHHHHTH-HHHHCTTCCCCCHHHHHH---HHHHHCTTCSSSEEHHHHHH
T ss_pred             HHHHCCCCCCeEcHHHHHHH-HHHHhccCCCCCHHHHHH---HHHHHCCCCCCcCCHHHHHH
Confidence            44568889999999886554 4444    4578888774   46667899999999998764

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=90.56  E-value=0.32  Score=42.41  Aligned_cols=55  Identities=25%  Similarity=0.415  Sum_probs=42.0

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      -+...|.+.+|.++..|+... +...| .++++++.   +-|++.|.|++|+|+..|...
T Consensus       114 ~F~~~D~d~~G~Is~~El~~~-l~~~g~~~~~~~~~---~~~~~~D~d~dG~i~~~eF~~  169 (191)
T 1uhk_A          114 LFDIVDKDQNGAITLDEWKAY-TKAAGIIQSSEDCE---ETFRVCDIDESGQLDVDEMTR  169 (191)
T ss_dssp             HHHHHCTTCSSEECHHHHHHH-HHHHTSCCSHHHHH---HHHHHSCCCTTSCEEHHHHHH
T ss_pred             HHHHhcCCCCCcCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            455678899999999987654 44444 57777766   557778999999999998764

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=90.51  E-value=0.22  Score=44.75  Aligned_cols=55  Identities=11%  Similarity=0.028  Sum_probs=39.9

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCH-------------HHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISE-------------KDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~-------------edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.+.+|.++-.||..........-..             .....+...|+..|.|++|.|+.+|+..
T Consensus        70 ~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~  137 (208)
T 2ct9_A           70 FFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQ  137 (208)
T ss_dssp             TSCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HcCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHHHHHHHHHHCCCCCCEEcHHHHHH
Confidence            467788999999987764433221111             1566778999999999999999999864

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=90.46  E-value=0.44  Score=38.35  Aligned_cols=53  Identities=21%  Similarity=0.345  Sum_probs=39.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|.... +...+ ++++++.+|   |+..|.|++|+|+.+|...
T Consensus        17 F~~~D~d~dG~Is~~el~~~-l~~~~-l~~~~l~~i---~~~~D~d~dG~i~~~EF~~   69 (99)
T 1qjt_A           17 YRQVEAGNTGRVLALDAAAF-LKKSG-LPDLILGKI---WDLADTDGKGVLSKQEFFV   69 (99)
T ss_dssp             HHHHCCTTSSCCCSHHHHHH-HHTSS-SCHHHHHHH---HHHHCCSSSSSCCSHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHHH-HHHcC-CCHHHHHHH---HHHHCCCCCCcCCHHHHHH
Confidence            45568899999998875443 44444 787777654   6677999999999998764

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=90.44  E-value=0.38  Score=41.21  Aligned_cols=45  Identities=16%  Similarity=0.186  Sum_probs=25.2

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+.+|.++..||......         +..+.+.|+..|.|++|.|+.+|+.
T Consensus        49 ~D~~~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~el~   93 (165)
T 1k94_A           49 LDRDHTGKMGFNAFKELWAA---------LNAWKENFMTVDQDGSGTVEHHELR   93 (165)
T ss_dssp             HCTTCSSCBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSBCCHHHHH
T ss_pred             hCCCCCCcCCHHHHHHHHHH---------HHHHHHHHHHhCCCCCceECHHHHH
Confidence            34555666666665543221         2345556666666666666666654

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=90.42  E-value=0.34  Score=38.63  Aligned_cols=54  Identities=19%  Similarity=0.415  Sum_probs=40.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...    ...+++++..   -|++.|.|++|+|+.+|...
T Consensus        48 F~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~~---~~~~~D~~~dg~i~~~eF~~  105 (109)
T 1bu3_A           48 FFVIDQDKSGFIEEDELKLF-LQVFSAGARALTDAETKA---FLKAGDSDGDGAIGVDEWAA  105 (109)
T ss_dssp             HHHHCTTCSSSEEHHHHHTH-HHHHSTTCCCCCHHHHHH---HHHHHCTTCSSEECHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHHcccCCCCCHHHHHH---HHHHhCCCCCCcEeHHHHHH
Confidence            34468889999988886544 4444    4578888774   46667899999999998764

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=90.36  E-value=0.031  Score=42.97  Aligned_cols=46  Identities=24%  Similarity=0.489  Sum_probs=34.9

Q ss_pred             CCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          394 NNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       394 ~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+|.++..|++.     ..+++++++..+.+.|+..|.+++|+|+..|+..
T Consensus         2 ~~G~i~~~e~~~-----~~~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~   47 (87)
T 1s6j_A            2 SSGHIDDDDKHM-----AERLSEEEIGGLKELFKMIDTDNSGTITFDELKD   47 (87)
T ss_dssp             CSSSSSSHHHHS-----SSSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHH
T ss_pred             CCCccCccHHHH-----HHHCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            466677766322     2456666777788999999999999999999864

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=90.34  E-value=0.45  Score=40.14  Aligned_cols=19  Identities=16%  Similarity=0.352  Sum_probs=9.6

Q ss_pred             HHhhhccCCCCCccChhhh
Q 013211          424 HKFDRLDTGNCGKITLADL  442 (447)
Q Consensus       424 ~~F~~ld~~~~G~l~~~dl  442 (447)
                      +.|+.+|.|++|.|+..|+
T Consensus        91 ~~F~~~D~d~~G~I~~~el  109 (156)
T 1wdc_B           91 NAFAMFDEQETKKLNIEYI  109 (156)
T ss_dssp             HHHHTTCTTCCSCEEHHHH
T ss_pred             HHHHHHCcCCCCccCHHHH
Confidence            4455555555555555544

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=90.32  E-value=0.34  Score=41.48  Aligned_cols=58  Identities=17%  Similarity=0.277  Sum_probs=44.1

Q ss_pred             HhhhhccCCCCcChHHHHHH---HHHHhC-CCCHHHHHHHH--------HHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIY---KLKEMG-KISEKDVMQIC--------HKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~---~L~~~~-ki~~edv~~i~--------~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+...   .+...| ..+++++..+.        +-|...|.|++|+|+..|+..
T Consensus        13 F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~~   82 (176)
T 1nya_A           13 FDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIR   82 (176)
T ss_dssp             HHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHH
T ss_pred             HHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            34568889999999998663   344444 56667777655        678999999999999999864

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=90.31  E-value=0.15  Score=38.98  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          412 GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       412 ~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..+++++...+.+.|+..|.|++|.|+..|+..
T Consensus         3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   35 (86)
T 2opo_A            3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGD   35 (86)
T ss_dssp             ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHH
Confidence            456888899999999999999999999999864

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=90.31  E-value=0.29  Score=42.87  Aligned_cols=56  Identities=21%  Similarity=0.292  Sum_probs=38.6

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      -+...|.+++|.++..|+....-.....++++++.   +-|++.|.|++|+|+.+|...
T Consensus       118 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~---~~~~~~D~d~dg~i~~~eF~~  173 (195)
T 1qv0_A          118 VFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCE---ATFRHCDLDNAGDLDVDEMTR  173 (195)
T ss_dssp             HHHHTC----CEECHHHHHHHHHHHSSCCCHHHHH---HHHHHSCCCTTSCEEHHHHHH
T ss_pred             HHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHH---HHHHHhCCCCCCcCCHHHHHH
Confidence            45567889999999988765533333457888776   457778999999999998864

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=90.30  E-value=0.24  Score=43.37  Aligned_cols=55  Identities=25%  Similarity=0.402  Sum_probs=41.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..||....-......+++++.   ..|+..|.|++|+|+.+|+..
T Consensus        69 f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~---~~f~~~D~d~~G~i~~~ef~~  123 (190)
T 1fpw_A           69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLS---WAFELYDLNHDGYITFDEMLT  123 (190)
T ss_dssp             HHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHH---HHHHHHCSSCSSEEEHHHHHH
T ss_pred             HHHHCCCCCCcEeHHHHHHHHHHHccCCcHHHHH---HHHHHhcCCCCCcCcHHHHHH
Confidence            3446788899999999877654444455555544   678999999999999999863

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=90.29  E-value=0.35  Score=39.95  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=40.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..+.+   +.| |++|+|+..|...
T Consensus        90 F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~---~~d-~~dg~i~~~eF~~  143 (147)
T 4ds7_A           90 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLR---EVS-DGSGEINIKQFAA  143 (147)
T ss_dssp             HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH---HHS-SSCSSEEHHHHHH
T ss_pred             HHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHH---Hhc-CCCCcCcHHHHHH
Confidence            44568889999999887765444445688888875555   557 9999999998864

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=90.29  E-value=0.25  Score=43.90  Aligned_cols=54  Identities=19%  Similarity=0.290  Sum_probs=40.3

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||....-......+++   .+...|+..|.|++|.|+.+|+..
T Consensus        59 ~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~I~~~Ef~~  112 (198)
T 2r2i_A           59 ETFDFNKDGYIDFMEYVAALSLVLKGKVDQ---KLRWYFKLYDVDGNGCIDRGELLN  112 (198)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHSSCCHHH---HHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHHCCCCCCeEcHHHHHHHHHHHccCchHH---HHHHHHHHhcCCCCCcCcHHHHHH
Confidence            346788999999999877644443333333   455779999999999999999863

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=90.28  E-value=0.36  Score=42.74  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=39.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|+....-....+++++++.++.+.+   | |++|+|+..|..
T Consensus        90 F~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~---d-d~dG~I~~~EF~  142 (176)
T 2lhi_A           90 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV---S-DGSGEINIQQFA  142 (176)
T ss_dssp             HHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH---H-TTSSCBCTTHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh---c-CCCCeEeHHHHH
Confidence            3445889999999988755433334578999998776654   6 899999998875

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=90.25  E-value=0.3  Score=42.25  Aligned_cols=54  Identities=20%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +... ..++++++..   -|++.|.|++|+|+..|...
T Consensus        90 F~~~D~d~~G~I~~~E~~~~-l~~~g~~~~~~~~~~---~~~~~D~~~dg~i~~~eF~~  144 (179)
T 2f2o_A           90 FRVFDKDGNGYISAAELRHV-MTNLGEKLTDEEVDE---MIREADIDGDGQVNYEEFVQ  144 (179)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHC--CCCHHHHHH---HHHHHCTTCSSSEEHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHcCCCCCCcCcHHHHHH
Confidence            44566777787777776544 3333 3566666664   45556778888888777653

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=90.25  E-value=0.31  Score=43.56  Aligned_cols=53  Identities=23%  Similarity=0.413  Sum_probs=41.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| ++++++.   +-|++.|.|++|+|+.+|...
T Consensus       134 F~~~D~d~~G~Is~~El~~~-l~~~g-~~~~~~~---~~~~~~D~d~dG~I~~~EF~~  186 (208)
T 2hpk_A          134 YDVLDDDGDGTVDVDELKTM-MKAFD-VPQEAAY---TFFEKADTDKSGKLERTELVH  186 (208)
T ss_dssp             HHHHCTTCSSSBCHHHHHHH-HHHTT-SCTTHHH---HHHHHHCTTCCSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHH-HHHhC-cCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            45568899999999987654 56777 8887776   456777999999999998764

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=90.25  E-value=0.22  Score=43.62  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=40.1

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||...........+++++   ...|+..|.|++|+|+.+|+..
T Consensus        70 ~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~---~~~f~~~D~d~~G~i~~~e~~~  123 (190)
T 2l2e_A           70 NVFDADKNGYIDFKEFICALSVTSRGELNDKL---IWAFQLYDLDNNGLISYDEMLR  123 (190)
T ss_dssp             HHHCSSSTTCEEHHHHHHHHTTSSCSCSHHHH---HHHHHHHCTTSCSCBCHHHHHH
T ss_pred             HHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHH---HHHHhHccCCCCCcCcHHHHHH
Confidence            34678889999999987764333334444444   4678999999999999999864

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=90.21  E-value=0.2  Score=44.73  Aligned_cols=53  Identities=30%  Similarity=0.423  Sum_probs=39.6

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++-.||+....... ...++   .+.+.|+.+|.|++|.|+.+|+..
T Consensus        94 ~~~D~d~~g~i~~~EF~~~~~~~~-~~~~~---~l~~~F~~~D~d~~G~Is~~El~~  146 (191)
T 3k21_A           94 DQIDSDGSGKIDYTEFIAAALDRK-QLSKK---LIYCAFRVFDVDNDGEITTAELAH  146 (191)
T ss_dssp             HHHCTTCSSSEEHHHHHHHHSCGG-GCCHH---HHHHHHHHHSTTCSSCBCHHHHHH
T ss_pred             HHhCCCCCCeEeHHHHHHHHHhhh-hccHH---HHHHHHHHhCCCCCCcCCHHHHHH
Confidence            345788899999999877643222 34444   445789999999999999999864

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=90.20  E-value=0.26  Score=45.36  Aligned_cols=54  Identities=22%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||....-.......+   ..+...|+..|.|++|+|+.+|+..
T Consensus       109 ~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~---~~l~~~F~~~D~d~dG~Is~~E~~~  162 (229)
T 3dd4_A          109 NAFDTDHNGAVSFEDFIKGLSILLRGTVQ---EKLNWAFNLYDINKDGYITKEEMLD  162 (229)
T ss_dssp             HTTCSSCCSSCCHHHHHHHHHHHHHSCHH---HHHHHHHHHHCTTCSSCCBHHHHHH
T ss_pred             HHcCCCCCCeEeHHHHHHHHHHHcCCChH---HHHHHHHHHhCCCCCCeECHHHHHH
Confidence            34678889999999988765444333333   3456789999999999999999864

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=90.19  E-value=0.093  Score=45.08  Aligned_cols=57  Identities=12%  Similarity=0.022  Sum_probs=22.4

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhC----CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMG----KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~----ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+...|.+.+|.++..||.........    ...  .-..+.+.|+..|.|++|+|+..|+..
T Consensus        32 ~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~--~~~~l~~~F~~~D~d~dG~I~~~El~~   92 (143)
T 3a4u_B           32 QPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMS--PQELQLHYFKMHDYDGNNLLDGLELST   92 (143)
T ss_dssp             -------------------------------CCC--HHHHHHHHHHHTCTTCSSCEEHHHHHH
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHHHHhcccccccC--HHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence            345578889999999998654322211    112  223556779999999999999999864

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=90.17  E-value=0.15  Score=41.48  Aligned_cols=54  Identities=20%  Similarity=0.315  Sum_probs=27.4

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+.+|.++..||...............-.++.+.|+..|.|++|.|+.+|+.
T Consensus        45 ~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~   98 (134)
T 1jfj_A           45 IDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVT   98 (134)
T ss_dssp             HCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             HcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCCCCCccCHHHHH
Confidence            355566666666654432100011222233335566666666666666666654

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=90.16  E-value=0.24  Score=40.95  Aligned_cols=54  Identities=20%  Similarity=0.396  Sum_probs=40.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++.   +-|+++|.|++|+|+..|...
T Consensus        82 F~~~D~d~~G~i~~~e~~~~-l~~~g~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~  136 (145)
T 2bl0_B           82 FRALDKEGNGTIQEAELRQL-LLNLGDALTSSEVE---ELMKEVSVSGDGAINYESFVD  136 (145)
T ss_dssp             HHHHCSSSSSEEEHHHHHHH-HHHSSSCCCHHHHH---HHHTTCCCCTTSEEEHHHHHH
T ss_pred             HHHhCCCCCCeEcHHHHHHH-HHHcCCCCCHHHHH---HHHHHcCCCCCCcEeHHHHHH
Confidence            34568889999998887654 44444 57877776   557788999999999998764

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=90.13  E-value=0.24  Score=43.45  Aligned_cols=54  Identities=20%  Similarity=0.278  Sum_probs=40.2

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||...........+++   .+...|+..|.|++|.|+.+|+..
T Consensus        70 ~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~---~~~~~f~~~D~d~~G~I~~~E~~~  123 (193)
T 1bjf_A           70 RTFDANGDGTIDFREFIIALSVTSRGKLEQ---KLKWAFSMYDLDGNGYISKAEMLE  123 (193)
T ss_dssp             HHHCSSCSSEEEHHHHHHHHHHHTSSCHHH---HHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHHcCCCHHH---HHHHHHhhcCCCCCCeECHHHHHH
Confidence            345778899999999877644443333333   455779999999999999999863

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=90.12  E-value=0.33  Score=43.43  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=40.0

Q ss_pred             hhhhccCCCCcChHHHHHHHH------H--HhCCCCHHHHHH-HHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKL------K--EMGKISEKDVMQ-ICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L------~--~~~ki~~edv~~-i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||.....      .  ....-. +...+ +.+.|+..|.|++|.|+.+|+..
T Consensus        88 ~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~F~~~D~d~~G~Is~~El~~  152 (208)
T 2hpk_A           88 LHKGVEPVNGLLREDWVEANRVFAEAERERERRGEP-SLIALLSNSYYDVLDDDGDGTVDVDELKT  152 (208)
T ss_dssp             HHTTCBTTTBEEGGGHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHhCCCCCCeEcHHHHHHHHHHHhhhhhhhhccCCh-HHHHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            346788899999999987644      1  222211 22223 67889999999999999999864

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=90.12  E-value=0.17  Score=37.58  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          414 ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++++++..+.+.|+..|.|++|.|+..|+..
T Consensus         1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~   31 (77)
T 2joj_A            1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKV   31 (77)
T ss_dssp             CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence            3678889999999999999999999999864

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=90.07  E-value=0.16  Score=52.16  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=39.3

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.|.+|.++..||+...........+++   +.+.|+..|.|++|+|+.+|+..
T Consensus       388 ~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~---~~~~F~~~D~d~dG~Is~~El~~  441 (486)
T 3mwu_A          388 PLLDMDGSGSIEYSEFIASAIDRTILLSRER---MERAFKMFDKDGSGKISTKELFK  441 (486)
T ss_dssp             HHHCTTCCSSBCHHHHHHHHSCTTTTCCHHH---HHHHHHHHCSSCSSSBCSSCC--
T ss_pred             HHhcCCCCCcCcHHHHHHHHHhhhccchHHH---HHHHHHHhCCCCCCcCCHHHHHH
Confidence            3457788999999998776554445555544   45788889999999999988753

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=89.97  E-value=0.43  Score=42.31  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=34.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +... ..++++++.   +-|++.|.|++|+|+.+|...
T Consensus        99 F~~~D~d~~G~i~~~e~~~~-l~~~g~~~~~~~~~---~~~~~~D~d~dg~i~~~eF~~  153 (191)
T 1y1x_A           99 FRKRDSSGDGRLDSNEVRAA-LLSSGYQVSEQTFQ---ALMRKFDRQRRGSLGFDDYVE  153 (191)
T ss_dssp             HHHHCTTSSSCBCHHHHHHH-HHTTSCCCCHHHHH---HHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHhCCCCCCeEcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCeEeHHHHHH
Confidence            44556777787777776543 3333 346666665   445566778888888877653

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=89.91  E-value=0.26  Score=42.95  Aligned_cols=51  Identities=22%  Similarity=0.440  Sum_probs=39.7

Q ss_pred             hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      |.+.+|.++..|+....-....+++++++.   +-|++.|.|++|+|+..|+..
T Consensus       112 D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~---~~~~~~D~d~dG~i~~~ef~~  162 (186)
T 2hps_A          112 DTDKDGYVSLPEFKAFLQAVGPDLTDDKAI---TCFNTLDFNKNGQISRDEFLV  162 (186)
T ss_dssp             CTTCSSEEEHHHHHHHHHHHCTTCCHHHHH---HHHHHHCTTCSSEEEHHHHHH
T ss_pred             cCCCCCcCCHHHHHHHHHHhCCCCCHHHHH---HHHHHHcCCCCCcCcHHHHHH
Confidence            788999999998876544444457887776   557777999999999998764

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=89.83  E-value=0.18  Score=38.62  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          412 GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       412 ~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..++++++.++.+.|+..|.|++|.|+..||..
T Consensus         6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   38 (86)
T 1j7q_A            6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMD   38 (86)
T ss_dssp             CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            346778888999999999999999999999863

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=89.83  E-value=0.38  Score=40.69  Aligned_cols=58  Identities=21%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             HhhhhccCCCCcChHHHHHHH---HHHhC-CCCHHHHHHHH--------HHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYK---LKEMG-KISEKDVMQIC--------HKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~---L~~~~-ki~~edv~~i~--------~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....   +...| ..+++++..+.        +-|...|.|++|+|+..|+..
T Consensus        10 F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~   79 (166)
T 3akb_A           10 FTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVT   79 (166)
T ss_dssp             HHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHHH
T ss_pred             HhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            345688999999999976652   33333 66777887775        668999999999999998764

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=89.82  E-value=0.33  Score=45.46  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=41.4

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||...........++++   +...|+..|.|++|.|+.+|+..
T Consensus       136 ~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~---l~~~F~~~D~d~dG~I~~~Ef~~  189 (256)
T 2jul_A          136 NAFDADGNGAIHFEDFVVGLSILLRGTVHEK---LKWAFNLYDINKDGCITKEEMLA  189 (256)
T ss_dssp             HHSSCSCCSEECSHHHHHHHHHHHSCCHHHH---HHHHHHHTCCSSSSCBCHHHHHH
T ss_pred             HHhccCCCCcCcHHHHHHHHHHHhccChHHH---HHHHHHHhCCCCCCcCcHHHHHH
Confidence            3467888999999998877554444444444   45779999999999999999864

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=89.81  E-value=0.32  Score=40.21  Aligned_cols=54  Identities=26%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||........ .....+   .+.+.|+.+|.|++|.|+..|+..
T Consensus        49 ~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~i~~~el~~  103 (142)
T 2bl0_C           49 NEADATGNGKIQFPEFLSMMGRRMKQTTSED---ILRQAFRTFDPEGTGYIPKAALQD  103 (142)
T ss_dssp             HHHCTTCSSEEEHHHHHHHHHHHHTTCCCHH---HHHHHHHHTCCSSCSCEEHHHHHH
T ss_pred             HHhCcCCCCeeeHHHHHHHHHHHhcCCChHH---HHHHHHHHHCCCCCCcCcHHHHHH
Confidence            346778899999999987765533 333333   456889999999999999999864

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=89.80  E-value=0.4  Score=41.25  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+.+|.++..||......         +..+.+.|+..|.|++|.|+.+|+.
T Consensus        51 ~D~~~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~el~   95 (167)
T 1gjy_A           51 LDRDMSGTMGFNEFKELWAV---------LNGWRQHFISFDSDRSGTVDPQELQ   95 (167)
T ss_dssp             HCTTCCSCBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSEECHHHHH
T ss_pred             HCCCCCCcCCHHHHHHHHHH---------HHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            45566677777776554322         2455666777777777777777764

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=89.79  E-value=0.5  Score=39.07  Aligned_cols=64  Identities=16%  Similarity=0.117  Sum_probs=42.6

Q ss_pred             cccchhHHHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          379 GQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       379 ~~~~t~~~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...+..++...--..+|.++-.||+...........  ....+...|+.+|.|++|.|+..|+..
T Consensus        37 g~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~I~~~El~~  100 (143)
T 3j04_B           37 GKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTD--PEDVIRNAFACFDEEASGFIHEDHLRE  100 (143)
T ss_dssp             SCCCCHHHHHTTTTTSSSCCCHHHHHHHHHHTTTSSC--CHHHHHHHHTTSCSSSCCCCCTTTHHH
T ss_pred             CCCCCHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCC--cHHHHHHHHHHHCCCCCCeEcHHHHHH
Confidence            3344444444433337888999998776554333221  123556889999999999999999864

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=89.78  E-value=0.29  Score=44.91  Aligned_cols=54  Identities=19%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||....-.......++   .+...|+..|.|++|+|+.+|+..
T Consensus        96 ~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~---~l~~~F~~~D~d~dG~Is~~E~~~  149 (224)
T 1s1e_A           96 NAFDTTQTGSVKFEDFVTALSILLRGTVHE---KLRWTFNLYDINKDGYINKEEMMD  149 (224)
T ss_dssp             HHHCTTCSSCBCHHHHHHHHHHHHHCCHHH---HHHHHHHHHCTTCCSEECHHHHHH
T ss_pred             HHhcCCCCCcEeHHHHHHHHHHHccCCHHH---HHHHHHHHHcCCCCCeECHHHHHH
Confidence            346788999999999887654443333333   455779999999999999999864

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=89.73  E-value=0.14  Score=38.70  Aligned_cols=54  Identities=19%  Similarity=0.484  Sum_probs=39.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC--CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG--KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~--ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...|  ..+++++.   +-|+..|.|++|.|+..|...
T Consensus        14 F~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~---~~~~~~D~~~dg~i~~~eF~~   69 (81)
T 1c7v_A           14 FKVFDANGDGVIDFDEFKFI-MQKVGEEPLTDAEVE---EAMKEADEDGNGVIDIPEFMD   69 (81)
T ss_dssp             HHHHSCSGGGEECHHHHHHH-SSTTTTCCCCHHHHH---HHHHHHCSSGGGSEEHHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHHH-HHHhCCCCCCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            34467888999998886543 44443  56777766   557777999999999998763

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=89.68  E-value=0.26  Score=39.28  Aligned_cols=54  Identities=24%  Similarity=0.412  Sum_probs=39.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...    ..++++++..   -|++.|.|++|+|+.+|...
T Consensus        48 F~~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~~~~~---~~~~~D~~~dg~i~~~EF~~  105 (109)
T 3fs7_A           48 FGILDQDKSGFIEEEELQLF-LKNFSSSARVLTSAETKA---FLAAGDTDGDGKIGVEEFQS  105 (109)
T ss_dssp             HHHHSTTCSSSBCHHHHHTT-GGGTCTTSCCCCHHHHHH---HHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHCCCCCCeEeHHHHHHH-HHHHhcccccCCHHHHHH---HHHHhCCCCCCcCcHHHHHH
Confidence            34457889999998886543 3343    4678888774   46677999999999998764

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=89.63  E-value=0.28  Score=39.09  Aligned_cols=54  Identities=19%  Similarity=0.418  Sum_probs=40.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...    ..++++++..   -|++.|.|++|+|+.+|...
T Consensus        47 F~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~~---~~~~~D~~~dg~i~~~eF~~  104 (108)
T 2pvb_A           47 FYVIDQDKSGFIEEDELKLF-LQNFSPSARALTDAETKA---FLADGDKDGDGMIGVDEFAA  104 (108)
T ss_dssp             HHHHCTTCSSSBCHHHHHTG-GGGTCTTSCCCCHHHHHH---HHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHHH-HHHHhccCCCCCHHHHHH---HHHHhCCCCCCcEeHHHHHH
Confidence            34568889999998886543 4444    3578888774   46667899999999998764

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=89.59  E-value=0.3  Score=41.22  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=37.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..+   |++.|.|++|.|+.+|...
T Consensus       102 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~eF~~  156 (161)
T 3fwb_A          102 FQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM---IEEFDLDGDGEINENEFIA  156 (161)
T ss_dssp             HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH---HHTTCSSSSSSEEHHHHHH
T ss_pred             HHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            455677788888888765543333345677776644   6667888888888887654

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=89.59  E-value=0.4  Score=40.42  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++-.||+...........  ....+...|+.+|.|++|.|+.+|+..
T Consensus        67 ~~d~~~~g~i~~~eF~~~~~~~~~~~~--~~~~~~~~F~~~D~d~~G~i~~~el~~  120 (161)
T 3fwb_A           67 EYDSEGRHLMKYDDFYIVMGEKILKRD--PLDEIKRAFQLFDDDHTGKISIKNLRR  120 (161)
T ss_dssp             HHCTTSSSCEEHHHHHHHHHHHHHTCC--HHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhCcCCCCeEeHHHHHHHHHHHHhcCC--cHHHHHHHHHHHcCCCCCeEeHHHHHH
Confidence            357788999999999877654433333  234556889999999999999999864

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=89.57  E-value=0.29  Score=40.85  Aligned_cols=54  Identities=22%  Similarity=0.411  Sum_probs=41.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++.   +-|++.|.|++|+|+..|...
T Consensus        89 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~---~~~~~~d~d~dg~i~~~eF~~  143 (148)
T 1m45_A           89 FQVFDKESTGKVSVGDLRYM-LTGLGEKLTDAEVD---ELLKGVEVDSNGEIDYKKFIE  143 (148)
T ss_dssp             HHTTCSSSSSEEEHHHHHHH-HHHSTTCCCHHHHH---HHHTTCCCCTTSEEEHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHH-HHHcCCCCCHHHHH---HHHHHhCCCCCCeEeHHHHHH
Confidence            44568889999998887654 44444 57888776   457788999999999998764

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=89.47  E-value=0.4  Score=38.46  Aligned_cols=54  Identities=13%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| ..+++++.   +-|++.|.|++|+|+.+|...
T Consensus        38 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~---~l~~~~D~d~dg~i~~~eF~~   92 (107)
T 2d58_A           38 YMEFDLNGNGDIDIMSLKRM-LEKLGVPKTHLELK---KLIGEVSSGSGETFSYPDFLR   92 (107)
T ss_dssp             HTTSCCCTTSCEEHHHHHHH-HHHTTCCCCHHHHH---HHHHHHCSSSSSEECHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCeEcHHHHHH
Confidence            34457888999998887644 55554 56777776   446677999999999998753

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=89.44  E-value=0.51  Score=41.12  Aligned_cols=53  Identities=11%  Similarity=0.061  Sum_probs=40.6

Q ss_pred             hhccCCCC-cChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADIDNNGF-VSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did~~g~-vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.+.+|. ++-.||+............+  ..+...|+..|.|++|.|+..|+..
T Consensus        69 ~D~d~~G~~I~~~EF~~~~~~~~~~~~~~--~~l~~~F~~~D~d~~G~I~~~El~~  122 (183)
T 1dgu_A           69 FSTSPAKDSLSFEDFLDLLSVFSDTATPD--IKSHYAFRIFDFDDDGTLNREDLSR  122 (183)
T ss_dssp             HSCSSSSCCCCHHHHHHHHHHHSTTCCHH--HHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             hCCCCCCCEecHHHHHHHHHHhcCCCCHH--HHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            46788999 99999987765554433322  3566889999999999999999864

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=89.35  E-value=0.39  Score=39.68  Aligned_cols=54  Identities=20%  Similarity=0.327  Sum_probs=39.9

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||+.........  ......+.+.|+.+|.|++|.|+.+|+..
T Consensus        55 ~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~F~~~D~d~~G~i~~~e~~~  108 (147)
T 4ds7_A           55 EIDVDGNHAIEFSEFLALMSRQLKC--NDSEQELLEAFKVFDKNGDGLISAAELKH  108 (147)
T ss_dssp             HHCTTSSSEEEHHHHHHHHHHHHHT--HHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhccCCCCcCcHHHHHHHHHHhccC--CCcHHHHHHHHHHhCCCCCCeECHHHHHH
Confidence            3577888999999987765433221  23335667889999999999999999864

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=89.30  E-value=0.21  Score=41.17  Aligned_cols=28  Identities=14%  Similarity=0.216  Sum_probs=13.1

Q ss_pred             CHHHHHHHHHHhhhccCCCCCccChhhh
Q 013211          415 SEKDVMQICHKFDRLDTGNCGKITLADL  442 (447)
Q Consensus       415 ~~edv~~i~~~F~~ld~~~~G~l~~~dl  442 (447)
                      ++++..++.+.|+.+|.|++|+|+.+||
T Consensus         9 s~~~~~~l~~~F~~~D~d~dG~I~~~El   36 (111)
T 2kgr_A            9 PQSSRLKYRQLFNSHDKTMSGHLTGPQA   36 (111)
T ss_dssp             CHHHHHHHHHHHHTTSCSSCCEEEHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHH
Confidence            3344444444444444444444444444

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=89.22  E-value=0.5  Score=40.86  Aligned_cols=49  Identities=16%  Similarity=0.200  Sum_probs=21.2

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL  442 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl  442 (447)
                      .|.+.+|.++..|+....-.....++++++..+.+.+   | |++|+|+..|.
T Consensus        86 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~---d-d~dg~i~~~eF  134 (173)
T 1alv_A           86 FDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRY---S-DEGGNMDFDNF  134 (173)
T ss_dssp             HCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHH---T-CSSSCBCHHHH
T ss_pred             HCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHh---c-CCCCcCcHHHH
Confidence            3444555555554433222222334444444333332   4 55555555554

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=89.14  E-value=0.54  Score=37.27  Aligned_cols=53  Identities=30%  Similarity=0.469  Sum_probs=38.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|... .+...| .+++++.++   |++.|.|++|+|+.+|...
T Consensus        16 F~~~D~d~dG~I~~~el~~-~l~~~g-~~~~~~~~i---~~~~D~d~dG~i~~~EF~~   68 (95)
T 1c07_A           16 FLKTDKDMDGFVSGLEVRE-IFLKTG-LPSTLLAHI---WSLCDTKDCGKLSKDQFAL   68 (95)
T ss_dssp             HHHHCTTCSSEECHHHHHH-HHHTTT-CCHHHHHHH---HHHHCTTCSSSEETTTHHH
T ss_pred             HHHhCCCCCCcEeHHHHHH-HHHHcC-CCHHHHHHH---HHHHCCCCCCcCCHHHHHH
Confidence            4456788999999888543 344554 777777654   6677999999999988753

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=89.12  E-value=0.82  Score=35.87  Aligned_cols=49  Identities=18%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             hhccCCC---CcChHHHHHHHHHH-----h-CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNG---FVSKSEYVIYKLKE-----M-GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g---~vs~~ef~~~~L~~-----~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .| +.+|   .++..|+... +..     + ...+++++.   +-|++.|.|++|+|+.+|..
T Consensus        18 ~D-~~dG~~g~Is~~EL~~~-l~~~~~~~lg~~~~~~~v~---~~~~~~D~d~dG~I~f~EF~   75 (92)
T 3rm1_A           18 YS-GREGDKHKLKKSELKEL-INNELSHFLEEIKEQEVVD---KVMETLDSNGDGECDFQEFM   75 (92)
T ss_dssp             HH-TSSSSTTSBCHHHHHHH-HHHHCTTTSCCCCSHHHHH---HHHHHHCTTSSSSBCHHHHH
T ss_pred             Hc-cCCCCcCeECHHHHHHH-HHHHhhhhccCcccHHHHH---HHHHHHcCCCCCCCcHHHHH
Confidence            34 4555   8888886443 444     3 456777777   44666799999999999865

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=89.00  E-value=0.24  Score=43.33  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=39.6

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||...........+++   .+...|+..|.|++|.|+.+|+..
T Consensus        70 ~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~---~~~~~f~~~D~d~~G~i~~~e~~~  123 (190)
T 1g8i_A           70 NVFDENKDGRIEFSEFIQALSVTSRGTLDE---KLRWAFKLYDLDNDGYITRNEMLD  123 (190)
T ss_dssp             HHHCTTCSSEEEHHHHHHHHHHHHHCCHHH---HHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             HHHhcCCCCeEeHHHHHHHHHHhcCCCHHH---HHHHHHHhhcCCCCCeECHHHHHH
Confidence            345778899999999876644333333333   455779999999999999999864

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=88.99  E-value=0.24  Score=36.54  Aligned_cols=53  Identities=11%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             hhh-hccCC-CCcChHHHHHHHHHHhC-CC--CHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAA-DIDNN-GFVSKSEYVIYKLKEMG-KI--SEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~-did~~-g~vs~~ef~~~~L~~~~-ki--~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ... |.+.+ |.++..|+... +...| ..  +++++.   +-|.+.|.|++|+|+..|...
T Consensus        12 ~~~~D~d~~~G~i~~~el~~~-l~~~g~~~~~~~~~~~---~l~~~~D~~~~g~i~~~eF~~   69 (76)
T 1qx2_A           12 EVFAAKEGDPNQISKEELKLV-MQTLGPSLLKGMSTLD---EMIEEVDKNGDGEVSFEEFLV   69 (76)
T ss_dssp             HHHHTSSSCTTSEEHHHHHHH-HHHHGGGSCTTSCSHH---HHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHcccCCCcCeECHHHHHHH-HHHhCCCcCCCHHHHH---HHHHHhCCCCCCcEeHHHHHH
Confidence            345 77888 99988886544 44443 44  656655   556777999999999998764

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=88.95  E-value=0.23  Score=41.41  Aligned_cols=51  Identities=14%  Similarity=0.192  Sum_probs=36.7

Q ss_pred             hccCCCCcChHHHHHHHHHH------hCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKE------MGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~------~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      |.+.+|.++..||.......      ......   ..+.+.|+.+|.|++|.|+..|+..
T Consensus        51 D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~---~~~~~~F~~~D~d~~G~I~~~el~~  107 (148)
T 1m45_A           51 SLRDASSLTLDQITGLIEVNEKELDATTKAKT---EDFVKAFQVFDKESTGKVSVGDLRY  107 (148)
T ss_dssp             CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCT---HHHHHHHHTTCSSSSSEEEHHHHHH
T ss_pred             CCCCCCeEcHHHHHHHHHHHHhhccccccccH---HHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            77888999999987764433      222333   3456889999999999999999864

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=88.95  E-value=0.45  Score=43.55  Aligned_cols=54  Identities=9%  Similarity=0.027  Sum_probs=31.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..+   |++.| |++|+|+.+|.+.
T Consensus       123 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l---~~~~d-d~dg~I~~~eF~~  176 (220)
T 3sjs_A          123 FVMNARARSGTLEPHEILPALQQLGFYINQRTSLLL---HRLFA-RGMAFCDLNCWIA  176 (220)
T ss_dssp             HHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHH---HHHHC---CCSEEHHHHHH
T ss_pred             HHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHH---HHHhc-CCCCcCcHHHHHH
Confidence            345566777777777665443333345666666544   44556 6777777777653

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=88.83  E-value=0.53  Score=41.67  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccC--hhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKIT--LADL  442 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~--~~dl  442 (447)
                      +...|.+.+|.++..||......         ...+.+.|+.+|.|++|+|+  ..|.
T Consensus       135 ~~~~D~d~dg~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~dG~i~~~~~eF  183 (191)
T 1y1x_A          135 MRKFDRQRRGSLGFDDYVELSIF---------VCRVRNVFAFYDRERTGQVTFTFDTF  183 (191)
T ss_dssp             HHHHCTTCSSSBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSEEEEEHHHH
T ss_pred             HHHhCCCCCCeEeHHHHHHHHHH---------HHHHHHHHHHhCcCCCceEEeeHHHH
Confidence            34567788999999998776443         25677889999999999954  4544

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=88.82  E-value=0.38  Score=41.59  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=39.3

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||.......+.  .......+.+.|+.+|.|++|.|+.+|+..
T Consensus        54 ~~~D~~~~g~i~~~EF~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~  108 (179)
T 2f2o_A           54 NEVDADGNGTIDFPEFLTMMARKMK--DTDSEEEIREAFRVFDKDGNGYISAAELRH  108 (179)
T ss_dssp             HHHCTTCSSSBCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhccCCCCCCcHHHHHHHHHHHcc--CcccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3457788888999888766443322  123445667889999999999999998864

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=88.80  E-value=0.42  Score=42.46  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=23.1

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+.+|.++..||......         +..+.+.|+..|.|++|.|+.+|+.
T Consensus        82 ~D~d~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~I~~~el~  126 (198)
T 1juo_A           82 LDRDMSGTMGFNEFKELWAV---------LNGWRQHFISFDTDRSGTVDPQELQ  126 (198)
T ss_dssp             HCTTCSSCEEHHHHHHHHHH---------HHHHHHHHHTTCTTCCSEECHHHHH
T ss_pred             hCCCCCCeECHHHHHHHHHH---------HHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            34455555555555443221         1344455666666666666665553

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=88.74  E-value=0.41  Score=39.36  Aligned_cols=53  Identities=17%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +. ...++++++..+   |++.|.|++|+|+.+|...
T Consensus        20 F~~~D~d~dG~I~~~El~~~-l~-~~~~~~~~~~~i---~~~~D~d~dG~I~~~EF~~   72 (111)
T 2kgr_A           20 FNSHDKTMSGHLTGPQARTI-LM-QSSLPQAQLASI---WNLSDIDQDGKLTAEEFIL   72 (111)
T ss_dssp             HHTTSCSSCCEEEHHHHHHH-HH-TTCCCHHHHHHH---HHHHCSSCCSEEEHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HH-hCCCCHHHHHHH---HHHHCCCCCCCCcHHHHHH
Confidence            34467888999988886443 33 566788877754   6678999999999998753

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=88.74  E-value=0.39  Score=37.81  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=39.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|... .+...| .+++++.++   |++.|.|++|+|+.+|...
T Consensus        15 F~~~D~d~dG~I~~~el~~-~l~~~g-~~~~~~~~i---~~~~D~d~dG~i~~~EF~~   67 (92)
T 1fi6_A           15 FKTIQPDLNGFIPGSAAKE-FFTKSK-LPILELSHI---WELSDFDKDGALTLDEFCA   67 (92)
T ss_dssp             HTTTCCSTTCEEEHHHHHH-HHHHHS-SCHHHHHHH---HHHHCTTCSSEEEHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHH-HHHHcC-CCHHHHHHH---HHHHCCCCCCCCCHHHHHH
Confidence            3456788899998887544 345555 777777655   5677999999999998753

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=88.70  E-value=0.34  Score=44.84  Aligned_cols=57  Identities=25%  Similarity=0.271  Sum_probs=43.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-----CCCHHHHHH-HHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-----KISEKDVMQ-ICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-----ki~~edv~~-i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...+     .++++++.. ..+-|++.|.|++|+|+..|+..
T Consensus       202 F~~~D~d~~G~Is~~E~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~  264 (272)
T 2be4_A          202 FAHYDVSRTGALEGPEVDGF-VKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELAL  264 (272)
T ss_dssp             HHHHCTTCCSEEETHHHHHH-HHHHHHHHSSSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHH
T ss_pred             HHHhCCCCCCeecHHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            34468889999999887554 33332     689999887 34468999999999999998764

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=88.65  E-value=0.8  Score=39.95  Aligned_cols=54  Identities=30%  Similarity=0.378  Sum_probs=39.1

Q ss_pred             hhhhccCCCCcChHHHHHHHHHH------------hCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKE------------MGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~------------~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+....-..            ....+++++.   +.|++.|.|++|+|+.+|+..
T Consensus       106 ~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~f~~~D~d~dG~I~~~Ef~~  171 (190)
T 2l2e_A          106 QLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVN---KIFNMMDKNKDGQLTLEEFCE  171 (190)
T ss_dssp             HHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHH---HHHHHHTCCSSCCBCHHHHHH
T ss_pred             hHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            44678899999999986653221            1245555555   668888999999999999864

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=88.64  E-value=0.38  Score=42.66  Aligned_cols=46  Identities=17%  Similarity=0.318  Sum_probs=35.2

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++-.||....-         .+..+.+.|+..| |++|+|+..||..
T Consensus        54 ~~D~d~~G~I~f~EF~~~~~---------~~~~l~~aF~~fD-d~~G~I~~~El~~   99 (174)
T 2i7a_A           54 LMELKVNGRLDQEEFARLWK---------RLVHYQHVFQKVQ-TSPGVLLSSDLWK   99 (174)
T ss_dssp             HHCSSCSSEECHHHHHHHHH---------HHHHHHHHHHHHC-SBTTBEEGGGHHH
T ss_pred             HHCCCCCCcCCHHHHHHHHH---------HHHHHHHHHHHhc-CCCCcCCHHHHHH
Confidence            45777888899888876422         1246778899999 9999999998864

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=88.60  E-value=0.24  Score=43.25  Aligned_cols=57  Identities=18%  Similarity=0.375  Sum_probs=42.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC------CCCHHHHHHH-HHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG------KISEKDVMQI-CHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~------ki~~edv~~i-~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...+      .++++++..+ .+-|.+.|.|++|+|+..|...
T Consensus       104 F~~~D~d~~G~I~~~El~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~  167 (183)
T 1dgu_A          104 FRIFDFDDDGTLNREDLSRL-VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH  167 (183)
T ss_dssp             HHHHCTTCSSEEEHHHHHHH-HHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHH-HHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            34468889999998887654 33443      4777777753 3458999999999999998764

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=88.59  E-value=0.52  Score=40.28  Aligned_cols=53  Identities=28%  Similarity=0.536  Sum_probs=40.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| ++++++.   +-|+++|.|++|+|+..|...
T Consensus       100 F~~~D~d~~G~i~~~e~~~~-l~~~g-~~~~~~~---~~~~~~D~d~dg~i~~~ef~~  152 (174)
T 1q80_A          100 FRAVDTNEDNNISRDEYGIF-FGMLG-LDKTMAP---ASFDAIDTNNDGLLSLEEFVI  152 (174)
T ss_dssp             HHHHCTTSSSSBCHHHHHHH-HHHHT-CCGGGHH---HHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcccHHHHHHH-HHHcC-CCHHHHH---HHHHHhCCCCCceEeHHHHHH
Confidence            45568899999999887654 44445 7777766   556677999999999998764

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=88.57  E-value=0.19  Score=51.85  Aligned_cols=54  Identities=30%  Similarity=0.533  Sum_probs=35.6

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||...........++++   +.+.|+.+|.|++|+|+.+|+..
T Consensus       397 ~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~---~~~~F~~~D~d~~G~Is~~El~~  450 (494)
T 3lij_A          397 GAADFDRNGYIDYSEFVTVAMDRKSLLSKDK---LESAFQKFDQDGNGKISVDELAS  450 (494)
T ss_dssp             HHHCTTCSSSEEHHHHHHHHSCHHHHTCHHH---HHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHhhhccccHHH---HHHHHHHHCCCCCCcCCHHHHHH
Confidence            3456777888888887766433333334433   45678888888888888888753

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=88.57  E-value=0.36  Score=38.44  Aligned_cols=54  Identities=24%  Similarity=0.425  Sum_probs=39.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...    ..++++++.   +-|++.|.|++|+|+..|...
T Consensus        48 F~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~  105 (110)
T 1pva_A           48 FKAIDADASGFIEEEELKFV-LKSFAADGRDLTDAETK---AFLKAADKDGDGKIGIDEFET  105 (110)
T ss_dssp             HHHHCTTCSSSBCHHHHHTG-GGGTCTTCCCCCHHHHH---HHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHH-HHHHhhcCCCCCHHHHH---HHHHHhCCCCCCeEcHHHHHH
Confidence            34467889999998886543 4444    357888776   446667899999999998764

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=88.48  E-value=0.27  Score=43.87  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=40.8

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||....-......+++++   .+.|+..|.|++|+|+.+|+..
T Consensus        78 ~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~---~~~f~~~D~d~~G~I~~~E~~~  131 (207)
T 2d8n_A           78 RSFDSNLDGTLDFKEYVIALHMTTAGKTNQKL---EWAFSLYDVDGNGTISKNEVLE  131 (207)
T ss_dssp             HHHCTTCCSEEEHHHHHHHHHHHSCSSSSTTH---HHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHH---HHHHHHhcCCCCCeEcHHHHHH
Confidence            34577889999999987765444444555544   4678999999999999999864

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=88.45  E-value=0.69  Score=39.42  Aligned_cols=49  Identities=18%  Similarity=0.151  Sum_probs=36.0

Q ss_pred             CCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          394 NNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       394 ~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+|.++-.||+...........  ....+.+.|+.+|.|++|.|+.+|+..
T Consensus        71 ~dg~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~I~~~el~~  119 (166)
T 2mys_B           71 ASGPINFTVFLTMFGEKLKGAD--PEDVIMGAFKVLDPDGKGSIKKSFLEE  119 (166)
T ss_pred             CCCCcCHHHHHHHHHHHhccCC--cHHHHHHHHHHhCCCCCcceeHHHHHH
Confidence            3788899998776554433322  224556889999999999999999864

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=88.33  E-value=0.56  Score=42.80  Aligned_cols=55  Identities=16%  Similarity=0.070  Sum_probs=40.3

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||............  ....+.+.|+..|.|++|+|+.+|+..
T Consensus        92 ~~~D~d~dG~I~~~Ef~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~Is~~E~~~  146 (226)
T 2zfd_A           92 DLFDTKHNGILGFEEFARALSVFHPNAP--IDDKIHFSFQLYDLKQQGFIERQEVKQ  146 (226)
T ss_dssp             HHHCSSCSSSBCHHHHHHHHHHTSTTSC--HHHHHHHHHHHHCTTSSSSEEHHHHHH
T ss_pred             HHHcCCCCCcCcHHHHHHHHHHHccCCC--HHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            3467888999999998766443322222  234566889999999999999999864

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=88.31  E-value=0.38  Score=40.89  Aligned_cols=49  Identities=22%  Similarity=0.428  Sum_probs=20.4

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+.+|.++..|+... +...| +++++   +.+-|+..|.|++|+|+.+|+.
T Consensus       108 ~D~d~~G~i~~~e~~~~-l~~~~-~~~~~---~~~~~~~~d~~~dg~i~~~eF~  156 (166)
T 2aao_A          108 FDKDGSGYITPDELQQA-CEEFG-VEDVR---IEELMRDVDQDNDGRIDYNEFV  156 (166)
T ss_dssp             HCTTCSSSBCHHHHHHH-TCC------------CCHHHHHCTTCSSSBCHHHHH
T ss_pred             hCCCCCCcCcHHHHHHH-HHHcC-CCHHH---HHHHHHHhCCCCCCcEeHHHHH
Confidence            34555555555554332 22222 33322   2234455555666666665554

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=88.26  E-value=0.58  Score=42.59  Aligned_cols=53  Identities=11%  Similarity=0.040  Sum_probs=39.8

Q ss_pred             hhccCCCC-cChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADIDNNGF-VSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did~~g~-vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.+.+|. ++-.||+............  -..+...|+..|.|++|.|+.+|+..
T Consensus       100 ~D~d~dG~~I~f~EF~~~~~~~~~~~~~--~~~l~~~F~~~D~d~dG~Is~~El~~  153 (214)
T 2l4h_A          100 FSTSPAKDSLSFEDFLDLLSVFSDTATP--DIKSHYAFRIFDFDDDGTLNREDLSR  153 (214)
T ss_dssp             HCCSSSCCSEEHHHHHHHHHHTSSCSCH--HHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             hCcCCCCCEecHHHHHHHHHHHcCCCCH--HHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            47788999 9999998765443332222  23566889999999999999999864

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=88.25  E-value=0.3  Score=41.18  Aligned_cols=56  Identities=20%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCC--HHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKIS--EKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~--~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||+...........  +.....+.+.|+.+|.|++|.|+..|+..
T Consensus        58 ~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~  115 (158)
T 2jnf_A           58 EFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMRE  115 (158)
T ss_dssp             HHCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSSTHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHhccccchhhHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            357788899999999887655543320  01223466889999999999999999863

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=88.23  E-value=0.12  Score=46.56  Aligned_cols=54  Identities=26%  Similarity=0.323  Sum_probs=32.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC---CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG---KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~---ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...+   .++++   .+.+-|++.|.|++|+|+..|...
T Consensus       135 F~~~D~d~~G~Is~~El~~~-l~~~~~~~~~~~~---~~~~l~~~~D~d~dG~Is~~EF~~  191 (197)
T 3pm8_A          135 FKFFDIDGNGKISVEELKRI-FGRDDIENPLIDK---AIDSLLQEVDLNGDGEIDFHEFML  191 (197)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HC----CCHHHHH---HHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred             HHHHCCCCCCCCCHHHHHHH-HHhcccCCCCCHH---HHHHHHHHHcCCCCCcCcHHHHHH
Confidence            34456777777777775443 32221   22333   344668888888888888777653

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=88.19  E-value=0.3  Score=37.66  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=28.7

Q ss_pred             CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          413 KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       413 ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .++++++..+.+.|+..|.|++|+|+..|+..
T Consensus        13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   44 (90)
T 1avs_A           13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGT   44 (90)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            46788899999999999999999999999864

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=88.15  E-value=0.3  Score=41.23  Aligned_cols=55  Identities=22%  Similarity=0.360  Sum_probs=39.5

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCC-CHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKI-SEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki-~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.+.+|.++..||..........- .......+.+.|+.+|.|++|.|+..|+..
T Consensus        65 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~  120 (162)
T 1top_A           65 VDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGE  120 (162)
T ss_dssp             HCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HcCCCCCcEeHHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            4677889999999876644332110 011456677889999999999999999864

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=88.12  E-value=0.15  Score=39.96  Aligned_cols=35  Identities=9%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          410 EMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       410 ~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ....+++++...+.+.|+..|.|++|+|+..|+..
T Consensus        17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~   51 (91)
T 2pmy_A           17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRA   51 (91)
T ss_dssp             --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred             HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHH
Confidence            33456678889999999999999999999999864

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=88.00  E-value=0.9  Score=40.85  Aligned_cols=55  Identities=27%  Similarity=0.462  Sum_probs=39.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh------CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM------GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~------~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...      ...+.++  .+.+-|++.|.|++|+|+.+|+..
T Consensus        99 F~~~D~d~~G~I~~~E~~~~-l~~~~~~~~~~~~~~~~--~~~~~f~~~D~d~dG~I~~~Ef~~  159 (211)
T 2ggz_A           99 FKLYDADGNGSIDKNELLDM-FMAVQALNGQQTLSPEE--FINLVFHKIDINNDGELTLEEFIN  159 (211)
T ss_dssp             HHHHCTTCSSSBCHHHHHHH-HHHHTTSSCCCSCTHHH--HHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHhcCCCCCcCcHHHHHHH-HHHHHhhcCCccccHHH--HHHHHHHHhCCCCCCCCcHHHHHH
Confidence            34468889999999997654 3443      3444433  234668888999999999999864

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=87.94  E-value=0.79  Score=38.56  Aligned_cols=54  Identities=15%  Similarity=0.336  Sum_probs=40.2

Q ss_pred             HhhhhccC-CCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDN-NGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~-~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+. +|.++..|+... +...| ..+++++.   +-|+.+|.|++|+|+..|...
T Consensus        24 F~~~D~~~~~G~i~~~e~~~~-l~~~~~~~~~~~~~---~~~~~~D~~~~g~i~~~eF~~   79 (161)
T 1dtl_A           24 FDIFVLGAEDGSISTKELGKV-MRMLGQNPTPEELQ---EMIDEVDEDGSGTVDFDEFLV   79 (161)
T ss_dssp             HHHHTTTCGGGSBCHHHHHHH-HHHTTCCCCHHHHH---HHHHHHCTTSSSSBCHHHHHH
T ss_pred             HHHHcCCCCCCcCcHHHHHHH-HHHcCCCCCHHHHH---HHHHHhCCCCCCeEcHHHHHH
Confidence            34567788 999998887654 44544 46777666   557778999999999998764

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=87.86  E-value=0.25  Score=50.78  Aligned_cols=53  Identities=21%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.|.+|.++..|+... |... .+++++++.++   |++.|.|++|+|+.+|.+
T Consensus       381 Fk~fDkDgdG~IS~eELr~v-L~~lGe~LSdeEIdeL---fke~D~DgDGkIsyeEFv  434 (440)
T 3u0k_A          381 FRVFDKDGNGYISAAELRHV-MTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFV  434 (440)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHHTCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HHHHCCCCcCcCCHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            34456667777776665443 3333 45666666644   445567777777777654

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=87.86  E-value=0.69  Score=38.22  Aligned_cols=54  Identities=9%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +|.+. |.++..||..................+.+.|+.+|.|++|.|+..|+..
T Consensus        56 ~d~~~-g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~  109 (149)
T 2mys_C           56 EEMNA-AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRH  109 (149)
T ss_pred             ccccC-CcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceEcHHHHHH
Confidence            46677 8899999887765553333334455677889999999999999999864

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=87.85  E-value=0.32  Score=43.03  Aligned_cols=54  Identities=22%  Similarity=0.349  Sum_probs=39.0

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++-.||........  .....-..+.+.|+..|.|++|.|+..||..
T Consensus        55 ~~d~d~~~~i~~~ef~~~~~~~~--~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~  108 (176)
T 2lhi_A           55 EIDVDGNHQIEFSEFLALMSRQL--KSNDSEQELLEAFKVFDKNGDGLISAAELKH  108 (176)
T ss_dssp             TTCSSCSSSBCTTHHHHHHTSSC--CSSHHHHHHHHHHHHHCSSCSSSBCHHHHHH
T ss_pred             HhCcCCCccchHHHHHHHHHHhc--ccCCcHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            45677888888888876532222  1223345678999999999999999999864

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=87.76  E-value=0.33  Score=42.55  Aligned_cols=52  Identities=21%  Similarity=0.383  Sum_probs=37.9

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||+.... ......+   ..+.+.|+.+|.|++|.|+.+|+..
T Consensus        81 ~~D~d~~g~i~~~Ef~~~~~-~~~~~~~---~~~~~~F~~~D~d~~G~I~~~El~~  132 (180)
T 3mse_B           81 ALDINDRGNITYTEFMAGCY-RWKNIES---TFLKAAFNKIDKDEDGYISKSDIVS  132 (180)
T ss_dssp             HHCTTCCSEECHHHHHHHHS-CCTTC-----CHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHH-hcccCCH---HHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            45778899999999876432 2222222   4567889999999999999999864

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=87.74  E-value=0.53  Score=40.56  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLA  440 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~  440 (447)
                      ..|.+.+|.++..||.......         ..+.+.|+.+|.|++|.|+.+
T Consensus       118 ~~d~~~dg~i~~~eF~~~~~~~---------~~~~~~F~~~D~d~dG~i~~~  160 (172)
T 2znd_A          118 KFDRQGRGQIAFDDFIQGCIVL---------QRLTDIFRRYDTDQDGWIQVS  160 (172)
T ss_dssp             HHCTTCSSSEEHHHHHHHHHHH---------HHHHHHHHHHCTTSSSCCCCC
T ss_pred             HhCCCCCCcCcHHHHHHHHHHH---------HHHHHHHHHhCCCCCCeEeee
Confidence            4577888999999987764332         567788999999999999864

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=87.70  E-value=0.42  Score=39.97  Aligned_cols=52  Identities=13%  Similarity=0.065  Sum_probs=35.2

Q ss_pred             cCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       393 d~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +.+|.++..||..................+.+.|+..|.|++|.|+.+|+..
T Consensus        60 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~  111 (151)
T 1w7j_B           60 LKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRH  111 (151)
T ss_dssp             HTTCEEEHHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3567788888877765555444445556677899999999999999999863

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=87.67  E-value=0.58  Score=40.30  Aligned_cols=53  Identities=25%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+.+|.++..|+... +... ..++++++.   +-|++.|.|++|+|+.+|..
T Consensus        80 F~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~  133 (172)
T 2znd_A           80 FRTYDRDNSGMIDKNELKQA-LSGFGYRLSDQFHD---ILIRKFDRQGRGQIAFDDFI  133 (172)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHTTCCCCHHHHH---HHHHHHCTTCSSSEEHHHHH
T ss_pred             HHHHCCCCCCccCHHHHHHH-HHHcCCCCCHHHHH---HHHHHhCCCCCCcCcHHHHH
Confidence            34456666777776665443 3333 345555555   33555667777777777654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=87.65  E-value=0.23  Score=51.32  Aligned_cols=20  Identities=40%  Similarity=0.627  Sum_probs=9.8

Q ss_pred             HHhhhccCCCCCccChhhhh
Q 013211          424 HKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       424 ~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +.|+..|.|++|+|+.+|+.
T Consensus       439 ~~F~~~D~d~dG~Is~~El~  458 (504)
T 3q5i_A          439 RAFNLFDTDKSGKITKEELA  458 (504)
T ss_dssp             HHHHHHCTTCCSEECHHHHH
T ss_pred             HHHHHhcCCCCCcCcHHHHH
Confidence            44444455555555554443

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=87.55  E-value=0.32  Score=37.54  Aligned_cols=33  Identities=18%  Similarity=0.352  Sum_probs=27.9

Q ss_pred             CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          412 GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       412 ~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      |..+.++...+.+.|+.+|.|++|.|+..||..
T Consensus         1 g~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   33 (92)
T 2kn2_A            1 GHMDTDAEEELKEAFKVFDKDQNGYISASELRH   33 (92)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHCCCCCCeEcHHHHHH
Confidence            345567788899999999999999999999864

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=87.50  E-value=1  Score=36.98  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             cCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       393 d~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +.+|.++..||............++....+.+.|+.+|.|++|.|+..|+..
T Consensus        49 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~  100 (140)
T 1ggw_A           49 TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRY  100 (140)
T ss_dssp             TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            7889999999987765555555544455677899999999999999999864

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*

Probab=87.49  E-value=1.3  Score=36.23  Aligned_cols=54  Identities=17%  Similarity=0.261  Sum_probs=38.2

Q ss_pred             Hhhhh-ccCCC-CcChHHHHHHHHHHhCC------CCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAAD-IDNNG-FVSKSEYVIYKLKEMGK------ISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~d-id~~g-~vs~~ef~~~~L~~~~k------i~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...| .+.+| .++..|+....-...+.      .+++++.   +-|+++|.|++|+|+..|.+
T Consensus        18 F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~---~l~~~~D~d~dG~I~f~EF~   79 (113)
T 1xk4_C           18 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIE---HIMEDLDTNADKQLSFEEFI   79 (113)
T ss_dssp             HHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHH---HHHHHHCTTCSSSBCHHHHH
T ss_pred             HHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHH---HHHHHhCCCCCCCEeHHHHH
Confidence            34456 48899 99988865543225553      4666665   55777899999999999876

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=87.29  E-value=0.32  Score=39.32  Aligned_cols=54  Identities=20%  Similarity=0.334  Sum_probs=38.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...+ ..++++   +..-|+..|.+++|+|+..|+..
T Consensus         6 F~~~D~~~~g~i~~~e~~~~-l~~~~~~~~~~~---~~~~~~~~D~~~~g~i~~~ef~~   60 (134)
T 1jfj_A            6 FKEIDVNGDGAVSYEEVKAF-VSKKRAIKNEQL---LQLIFKSIDADGNGEIDQNEFAK   60 (134)
T ss_dssp             HHHHCTTCSSEEEHHHHHHH-HHTTCCSSHHHH---HHHHHHHHCSSCCSEEEHHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHHH-HHHcCCCCCHHH---HHHHHHHHcCCCCCeEcHHHHHH
Confidence            34567889999999887654 44444 334444   44668888999999999999864

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=87.27  E-value=0.77  Score=40.46  Aligned_cols=56  Identities=14%  Similarity=0.149  Sum_probs=41.2

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      -+...|.+.+|.++..|+....-......+++++.   +-|+..|.|++|.|+..|...
T Consensus        42 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~---~~~~~~D~d~dg~i~~~ef~~   97 (204)
T 3e3r_A           42 FFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAE---GVCRKWDRNGSGTLDLEEFLR   97 (204)
T ss_dssp             HHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHH---HHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHH---HHHHHhccCCCCcCcHHHHHH
Confidence            35567889999999998765433223456776666   557777999999999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=87.22  E-value=0.21  Score=51.23  Aligned_cols=50  Identities=28%  Similarity=0.482  Sum_probs=21.4

Q ss_pred             hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      |.|.+|.++..||..........   ..-..+.+.|+..|.|++|+|+.+|+.
T Consensus       392 D~d~~g~i~~~Ef~~~~~~~~~~---~~~~~~~~~F~~~D~d~dG~I~~~El~  441 (484)
T 3nyv_A          392 DFDKNGYIEYSEFVTVAMDRKTL---LSRERLERAFRMFDSDNSGKISSTELA  441 (484)
T ss_dssp             TCCTTSEEEHHHHHHHHHHHHHH---HHHHHHHHHHHHHCTTCCSEEEHHHHH
T ss_pred             CCCCCCeEeHHHHHHHHHhcccc---CcHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence            44455555555554432222111   111233344555555555555555543

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=87.11  E-value=0.41  Score=42.67  Aligned_cols=53  Identities=17%  Similarity=0.272  Sum_probs=31.5

Q ss_pred             hhhhcc--CCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADID--NNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did--~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+  .+|.++..|+.. .|.......+.   .+.+-|+..|.|++|+|+..|+..
T Consensus        44 ~~~D~d~~~~G~i~~~e~~~-~l~~~~~~~~~---~~~~~f~~~D~d~~g~i~~~Ef~~   98 (207)
T 2ehb_A           44 KKLSSSIIDDGLIHKEEFQL-ALFRNRNRRNL---FADRIFDVFDVKRNGVIEFGEFVR   98 (207)
T ss_dssp             HHHTTSSSCSSCEEHHHHHH-HHHSCTTCCCH---HHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhccccCCCCccCHHHHHH-HHhccccccHH---HHHHHHHHhcCCCCCeEeHHHHHH
Confidence            345666  778777777543 24331222222   234567777888888888887653

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=87.08  E-value=0.57  Score=43.02  Aligned_cols=54  Identities=24%  Similarity=0.512  Sum_probs=37.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-------------CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-------------GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-------------~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+... +...             ...+++++.   +-|++.|.|++|+|+.+|+..
T Consensus       144 F~~~D~d~dG~Is~~E~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~D~d~dG~Is~~EF~~  210 (229)
T 3dd4_A          144 FNLYDINKDGYITKEEMLDI-MKAIYDMMGKCTYPVLKEDAPRQHVE---TFFQKMDKNKDGVVTIDEFIE  210 (229)
T ss_dssp             HHHHCTTCSSCCBHHHHHHH-HHHHHHHCC-----------CCTHHH---HHHHHHCSSCSSBCCHHHHHH
T ss_pred             HHHhCCCCCCeECHHHHHHH-HHHHHHHhccccCCCcchhhHHHHHH---HHHHHhcCCCCCcEeHHHHHH
Confidence            34568899999999886554 2221             223444444   668888999999999999864

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=87.00  E-value=0.16  Score=41.95  Aligned_cols=29  Identities=14%  Similarity=0.095  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          415 SEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       415 ~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ++++..++.+.|+.+|.|++|+|+.+|+.
T Consensus        17 s~~~~~~~~~~F~~~D~d~dG~Is~~el~   45 (110)
T 1iq3_A           17 TEEQREYYVNQFRSLQPDPSSFISGSVAK   45 (110)
T ss_dssp             SSSSHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence            34445555566666666666666666654

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=86.90  E-value=0.35  Score=49.68  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=24.7

Q ss_pred             CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          412 GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       412 ~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .+++++++.++.+.|+.+|.|++|+|+.+||.
T Consensus       294 E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk  325 (440)
T 3u0k_A          294 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELG  325 (440)
T ss_dssp             BCCCHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCCEECHHHHH
Confidence            56777778888888888888888888877775

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A

Probab=86.80  E-value=0.86  Score=39.01  Aligned_cols=53  Identities=13%  Similarity=0.338  Sum_probs=37.7

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+... +...| ..+++++..+   |++.|.|++|+|+.+|...
T Consensus        57 ~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~e~~~l---~~~~D~d~dg~I~~~eF~~  110 (150)
T 2jjz_A           57 MEFDLNNEGEIDLMSLKRM-MEKLGVPKTHLEMKKM---ISEVTGGVSDTISYRDFVN  110 (150)
T ss_dssp             TTSCCCTTSSBCHHHHHHH-HHHTTCCCCHHHHHHH---HHHHHTTSCSSBCHHHHHH
T ss_pred             HHhCCCCcCcCCHHHHHHH-HHHcCCCCCHHHHHHH---HHHHCCCCCCcEeHHHHHH
Confidence            3457788899888886543 45554 5677777644   5566889999999988753

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=86.76  E-value=0.67  Score=40.50  Aligned_cols=57  Identities=26%  Similarity=0.454  Sum_probs=40.5

Q ss_pred             hhhhccCCCCcChHHHHHHHHHH---hC---CCCHHH---HHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKE---MG---KISEKD---VMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~---~~---ki~~ed---v~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+....-..   .|   ++++++   ...+.+.|++.|.|++|+|+.+|+..
T Consensus       106 ~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~  171 (193)
T 1bjf_A          106 SMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIR  171 (193)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHH
T ss_pred             hhcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            44688899999999986553222   23   344322   34466789999999999999999864

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=86.65  E-value=0.34  Score=38.58  Aligned_cols=54  Identities=24%  Similarity=0.437  Sum_probs=39.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...    ..++++++.   +-|++.|.|++|+|+.+|...
T Consensus        47 F~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~---~~~~~~D~~~dg~i~~~eF~~  104 (108)
T 1rro_A           47 FRFIDNDQSGYLDGDELKYF-LQKFQSDARELTESETK---SLMDAADNDGDGKIGADEFQE  104 (108)
T ss_dssp             HHHHCTTCSSEECTHHHHTG-GGGTCTTSCCCCHHHHH---HHHHHHCCSSSSSEEHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHH-HHHHhhccCCCCHHHHH---HHHHHhCCCCCCcCcHHHHHH
Confidence            34567889999998886543 4444    357888776   456677999999999998764

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=86.62  E-value=0.83  Score=37.16  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=34.5

Q ss_pred             ccCC-CCcChHHHHHHHHHHh-----CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          392 IDNN-GFVSKSEYVIYKLKEM-----GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       392 id~~-g~vs~~ef~~~~L~~~-----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+ |.++..|+....-.+.     .+.+++++.++   ++++|.|++|+|+..|.+
T Consensus        22 ~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~---i~~~D~dgDG~Idf~EF~   76 (101)
T 3nso_A           22 RCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKF---MSVLDTNKDCEVDFVEYV   76 (101)
T ss_dssp             TSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHH---HHHHHHCCCSCEEHHHHH
T ss_pred             cCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HHHhCCCCCCCCcHHHHH
Confidence            4565 8899888644322223     46778887754   556789999999999865

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=86.61  E-value=0.55  Score=39.53  Aligned_cols=54  Identities=28%  Similarity=0.499  Sum_probs=40.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhh--ccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDR--LDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~--ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++..+   |++  .|.|++|+|+..|...
T Consensus        90 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~---~~~~~~D~d~dg~i~~~eF~~  146 (156)
T 1wdc_C           90 FKTFDREGQGFISGAELRHV-LTALGERLSDEDVDEI---IKLTDLQEDLEGNVKYEDFVK  146 (156)
T ss_dssp             HHTTCSSSSSEEEHHHHHHH-HHHSSSCCCHHHHHHH---HHHHTCCCCTTSEEEHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHH-HHHcCCCCCHHHHHHH---HHHhCCCCCCCCcEeHHHHHH
Confidence            44568889999998887654 44444 6788887755   555  7999999999998763

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=86.47  E-value=0.76  Score=40.63  Aligned_cols=54  Identities=24%  Similarity=0.497  Sum_probs=38.9

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHh-------CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEM-------GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~-------~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||... +...       ...+.++  .+.+-|++.|.|++|+|+..|+..
T Consensus        95 ~~~D~d~~G~I~~~Ef~~~-~~~~~~~~~~~~~~~~~~--~~~~~f~~~D~d~dG~I~~~Ef~~  155 (198)
T 2r2i_A           95 KLYDVDGNGCIDRGELLNI-IKAIRAINRCNEAMTAEE--FTNMVFDKIDINGDGELSLEEFME  155 (198)
T ss_dssp             HHHCTTCSSCEEHHHHHHH-HHHTTGGGGSSSCCCHHH--HHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhcCCCCCcCcHHHHHHH-HHHHHhhcCCCchhhHHH--HHHHHHHHhCCCCCCcCcHHHHHH
Confidence            4468899999999987654 3443       3445443  234668888999999999999864

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=86.29  E-value=0.54  Score=40.95  Aligned_cols=54  Identities=28%  Similarity=0.477  Sum_probs=41.0

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||+...........++   .+...|+..|.|++|.|+.+|+..
T Consensus        94 ~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~I~~~E~~~  147 (191)
T 3khe_A           94 QSVDFDRNGYIEYSEFVTVCMDKQLLLSRE---RLLAAFQQFDSDGSGKITNEELGR  147 (191)
T ss_dssp             HHTCTTCSSSEEHHHHHHHHSCHHHHCCHH---HHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHHHHHhcccchHH---HHHHHHHHHCCCCcCcCCHHHHHH
Confidence            345788899999999987644333334444   456889999999999999999875

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=86.23  E-value=1.7  Score=37.17  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=41.6

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhC------CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMG------KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~------ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+...|.+.+|.++..|+... +...|      ..+++++.   +-|+..|.|++|+|+..|...
T Consensus         6 ~F~~~D~d~~G~i~~~el~~~-l~~lg~~~~~~~~~~~~~~---~l~~~~D~~~~g~i~~~eF~~   66 (167)
T 1gjy_A            6 GYFASVAGQDGQIDADELQRC-LTQSGIAGGYKPFNLETCR---LMVSMLDRDMSGTMGFNEFKE   66 (167)
T ss_dssp             HHHHHHCCTTSCBCHHHHHHH-HHHHTCSTTSCCCCHHHHH---HHHHHHCTTCCSCBCHHHHHH
T ss_pred             HHHHHHcCCCCcCCHHHHHHH-HHhhcccCCCCCcCHHHHH---HHHHHHCCCCCCcCCHHHHHH
Confidence            455678899999999887554 55555      46777776   456677899999999998764

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=86.16  E-value=0.75  Score=39.30  Aligned_cols=54  Identities=13%  Similarity=0.342  Sum_probs=39.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++..   -|++.|.|++|+|+.+|...
T Consensus        54 F~~~D~d~dG~I~~~El~~~-l~~~g~~~~~~~~~~---l~~~~D~d~dg~I~~~eF~~  108 (147)
T 1wy9_A           54 YMEFDLNGNGDIDIMSLKRM-LEKLGVPKTHLELKR---LIREVSSGSEETFSYSDFLR  108 (147)
T ss_dssp             HTTSCCCTTSSEEHHHHHHH-HHHTTCCCCHHHHHH---HHHHHCSSCTTEECHHHHHH
T ss_pred             HHHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHhCCCCCCcEeHHHHHH
Confidence            34457788999988887654 45554 577777764   46667899999999988753

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=86.12  E-value=0.99  Score=42.07  Aligned_cols=54  Identities=22%  Similarity=0.409  Sum_probs=38.5

Q ss_pred             hhhhccCCCCcChHHHHHHHHHH---hC---------CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKE---MG---------KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~---~~---------ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+.......   +|         ..++++   +.+-|++.|.|++|+|+.+|+..
T Consensus       172 ~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~---~~~~f~~~D~d~dG~Is~~Ef~~  237 (256)
T 2jul_A          172 NLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEH---VERFFQKMDRNQDGVVTIDEFLE  237 (256)
T ss_dssp             HHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHH---HHHHHHHSCCSTTCSBCHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHH---HHHHHHHHCCCCCCcEeHHHHHH
Confidence            44688999999999876543222   14         223344   44778999999999999999864

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=85.68  E-value=0.48  Score=41.32  Aligned_cols=55  Identities=29%  Similarity=0.491  Sum_probs=38.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH---hC---------CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE---MG---------KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~---~~---------ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+.......   .|         ..++++   +.+.|++.|.|++|+|+.+|+..
T Consensus       105 f~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~---~~~~f~~~D~d~dG~i~~~ef~~  171 (190)
T 1g8i_A          105 FKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKR---VDRIFAMMDKNADGKLTLQEFQE  171 (190)
T ss_dssp             HHHHCTTCSSEEEHHHHHHHHHHHHHHC-----CCGGGSSHHHH---HHHHHHHHCSSCSSEEEHHHHHH
T ss_pred             HHhhcCCCCCeECHHHHHHHHHHHHHHhCCccCCccccccHHHH---HHHHHHHhcCCCCCcEeHHHHHH
Confidence            344678899999999876543221   22         234444   44668888999999999999864

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=85.64  E-value=0.71  Score=38.41  Aligned_cols=52  Identities=19%  Similarity=0.354  Sum_probs=40.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+... +...| .++++++..+.+.+     |++|+|+..|...
T Consensus        90 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~~~~~-----d~dg~i~~~eF~~  142 (146)
T 2qac_A           90 FAHFDNNCTGYLTKSQMKNI-LTTWGDALTDQEAIDALNAF-----SSEDNIDYKLFCE  142 (146)
T ss_dssp             HHTTCTTCSSEEEHHHHHHH-HHHSSSCCCHHHHHHHHHHH-----CSSSEEEHHHHHH
T ss_pred             HHHhCCCCCCCCCHHHHHHH-HHHhCCCCCHHHHHHHHHHc-----CCCCcCcHHHHHH
Confidence            44567888999998887654 44444 68999999888777     8999999998764

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=85.62  E-value=0.89  Score=38.77  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=38.4

Q ss_pred             CCCCcChHHHHHHHHHHhCCC--CHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          394 NNGFVSKSEYVIYKLKEMGKI--SEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       394 ~~g~vs~~ef~~~~L~~~~ki--~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+|.++..||..........-  .......+.+.|+..|.|++|+|+.+|+..
T Consensus        66 ~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~  118 (174)
T 1q80_A           66 GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGI  118 (174)
T ss_dssp             TTSCEEHHHHHHHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred             CCCeEcHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            889999999987655544311  123346678899999999999999999864

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=85.45  E-value=0.5  Score=41.24  Aligned_cols=55  Identities=25%  Similarity=0.428  Sum_probs=39.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH---hCC---------CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE---MGK---------ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~---~~k---------i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..||.......   .|.         .++++   +.+.|++.|.|++|+|+.+|+..
T Consensus       105 f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~f~~~D~d~dG~I~~~Ef~~  171 (190)
T 1fpw_A          105 FELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMR---VKKIFKLMDKNEDGYITLDEFRE  171 (190)
T ss_dssp             HHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHH---HHHHHHHHTTTCSSEEEHHHHHH
T ss_pred             HHHhcCCCCCcCcHHHHHHHHHHHHHHhccccCcccccchHHHH---HHHHHHHhCCCCCCcCcHHHHHH
Confidence            344688899999999987653332   231         33344   44678888999999999999864

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=85.32  E-value=0.89  Score=37.79  Aligned_cols=45  Identities=16%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             cChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          398 VSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       398 vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++..||+..........  .....+.+.|+..|.|++|.|+..|+..
T Consensus        64 i~~~eF~~~~~~~~~~~--~~~~~l~~~F~~~D~d~~G~I~~~el~~  108 (146)
T 2qac_A           64 LTYEQYLEYLSICVHDK--DNVEELIKMFAHFDNNCTGYLTKSQMKN  108 (146)
T ss_dssp             ECHHHHHHHHHHTCCTT--CCHHHHHHHHHTTCTTCSSEEEHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCc--chHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            56666655433222111  1233466889999999999999999864

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}

Probab=85.03  E-value=1.6  Score=35.62  Aligned_cols=49  Identities=14%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             ccCC-CCcChHHHHHHHHHHhC-----CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          392 IDNN-GFVSKSEYVIYKLKEMG-----KISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       392 id~~-g~vs~~ef~~~~L~~~~-----ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .|.+ |.++..|+....-.+.+     +.+++++.++   |+++|.|++|+|+.+|.+
T Consensus        25 ~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~---i~~~D~dgDG~Idf~EF~   79 (104)
T 3zwh_A           25 KEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKL---MSNLDSNRDNEVDFQEYC   79 (104)
T ss_dssp             SSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             cCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHH---HHHHcCCCCCCCcHHHHH
Confidence            3454 68888886543222333     4577777754   666799999999999875

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=85.01  E-value=0.28  Score=45.11  Aligned_cols=52  Identities=23%  Similarity=0.409  Sum_probs=30.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh---CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM---GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~---~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+.+|.++..|+... +...   + ++.++   +.+-|++.|.|++|+|+.+|..
T Consensus       139 F~~~D~d~dG~Is~~El~~~-l~~~~~~g-~~~~e---~~~~~~~~D~d~dG~Is~~EF~  193 (226)
T 2lvv_A          139 FDTMDKDGSLLLELQEFKEA-LPKLKEWG-VDITD---ATTVFNEIDTNGSGVVTFDEFS  193 (226)
T ss_dssp             HHHHSCSSCCEECHHHHHHH-HHHHHHHT-CCCCS---CHHHHHHHCCSCSSCEEHHHHH
T ss_pred             HHHHcCCCCCeEcHHHHHHH-HHHHhhcC-CCHHH---HHHHHHHhCCCCCCcEeHHHHH
Confidence            44566777777777775543 2222   2 22222   4455677777777777777765

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=84.93  E-value=0.95  Score=41.34  Aligned_cols=46  Identities=7%  Similarity=0.075  Sum_probs=33.5

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhc-cCCCCC------ccChhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRL-DTGNCG------KITLADLM  443 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~l-d~~~~G------~l~~~dl~  443 (447)
                      ...| +.+|.++..||+......         ..+.+.|++. |.+++|      .++.++.+
T Consensus       160 ~~~d-d~dg~I~~~eF~~~~~~l---------~~~~~~F~~~~D~~~~G~i~~~~~i~~~ef~  212 (220)
T 3sjs_A          160 RLFA-RGMAFCDLNCWIAICAFA---------AQTRSAYQMIFMNPYYGPMKPFNPMEFGKFL  212 (220)
T ss_dssp             HHHC---CCSEEHHHHHHHHHHH---------HHHHHHHHHHHTSGGGCSCCCCCHHHHHHHH
T ss_pred             HHhc-CCCCcCcHHHHHHHHHHH---------HHHHHHHHHhcccCCCCCcccccceeHHHHH
Confidence            4567 888999999988775442         3677889999 999999      66766654

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=84.86  E-value=1.3  Score=39.29  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh---C-------------C-CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM---G-------------K-ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~---~-------------k-i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-...   |             + ..+++   +.+-|++.|.|++|+|+.+|+..
T Consensus       101 F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~---~~~~f~~~D~d~dG~Is~~Ef~~  172 (204)
T 1jba_A          101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEV---VDRIFLLVDENGDGQLSLNEFVE  172 (204)
T ss_dssp             HHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHH---HHHHHHHHCCSCCSCBCHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHH---HHHHHHHhCCCCCCeEcHHHHHH
Confidence            3446888999999998765432220   1             1 33334   44668888999999999999864

>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=84.82  E-value=1.1  Score=35.70  Aligned_cols=57  Identities=19%  Similarity=0.346  Sum_probs=38.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH-----hCC-CCH-------H-HHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE-----MGK-ISE-------K-DVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~-----~~k-i~~-------e-dv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +..     .+. .++       + .-..+.+-|.++|.|++|+|+.+|...
T Consensus        26 F~~~D~d~dG~I~~~El~~~-l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~   96 (103)
T 1snl_A           26 FILHDINSDGVLDEQELEAL-FTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLA   96 (103)
T ss_dssp             HHHHCSSCCSEEEHHHHHHH-HHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHH
T ss_pred             HHHHcCCCCCcccHHHHHHH-HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHH
Confidence            44568899999998886544 332     232 221       1 112355679999999999999998763

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*

Probab=84.59  E-value=2.3  Score=33.64  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             cCC-CCcChHHHHHHHHHHhC-----CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          393 DNN-GFVSKSEYVIYKLKEMG-----KISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       393 d~~-g~vs~~ef~~~~L~~~~-----ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      |.+ |.++..|+....-.+.+     +.+++++.++   ++++|.|++|+|+.+|.+
T Consensus        23 dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~---i~~~D~d~DG~Idf~EF~   76 (93)
T 4eto_A           23 EGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKL---MSNLDSNRDNEVDFQEYC   76 (93)
T ss_dssp             SSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHH---HHHHCTTSSSSBCHHHHH
T ss_pred             CCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHH---HHHHCCCCCCCCcHHHHH
Confidence            443 78888886443222333     3567777644   666799999999999865

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=84.13  E-value=0.51  Score=42.07  Aligned_cols=53  Identities=11%  Similarity=0.043  Sum_probs=40.6

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+.... .....++++++.   .-|+..|.|++|.|+..|...
T Consensus       133 ~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~---~l~~~~D~d~dG~I~~~EF~~  185 (196)
T 3dtp_E          133 NLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVD---QALSEAPIDGNGLIDIKKFAQ  185 (196)
T ss_dssp             HTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHH---HHHHSSCEETTEECHHHHHHH
T ss_pred             HHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHH---HHHHHcCCCCCCEEeHHHHHH
Confidence            44688899999998877665 333467888777   446777999999999998764

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=84.06  E-value=1.2  Score=37.76  Aligned_cols=53  Identities=26%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||........   .......+...|+.+|.|++|.|+..|+..
T Consensus        71 ~~d~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~  123 (166)
T 2aao_A           71 AADVDNSGTIDYKEFIAATLHLN---KIEREDHLFAAFTYFDKDGSGYITPDELQQ  123 (166)
T ss_dssp             HHCTTCCSSBCHHHHHHHHTTCH---HHHTTHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHh---hcccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            44667778888888765532111   112234567889999999999999998865

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=84.01  E-value=2  Score=35.00  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=37.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|. .+|.++..|... .+...| ++++++.+|   ++..|.|++|+|+.+|...
T Consensus        21 F~~~D~-~dG~Is~~el~~-~l~~~g-l~~~el~~i---~~~~D~d~dG~id~~EF~~   72 (106)
T 1eh2_A           21 FDSLSP-VNGFLSGDKVKP-VLLNSK-LPVDILGRV---WELSDIDHDGMLDRDEFAV   72 (106)
T ss_dssp             HTTSCC-SSSCCBHHHHHH-HHHTTT-CCHHHHHHH---HHHHCSSCSSBCCHHHHHH
T ss_pred             HHHhCC-CCCeEcHHHHHH-HHHHcC-CCHHHHHHH---HHHHcCCCCCcCcHHHHHH
Confidence            334566 889988877433 344554 888887755   6678999999999998763

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=83.81  E-value=1.2  Score=38.59  Aligned_cols=55  Identities=29%  Similarity=0.364  Sum_probs=40.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+.+|.++..|+... |... .+++++++..+.+.++. +.|++|+|+..|.+
T Consensus        91 F~~fD~d~~G~I~~~el~~~-l~~~g~~ls~~e~~~l~~~~D~-~~d~dG~I~~~EF~  146 (159)
T 3i5g_C           91 FKTFDREGQGLISSAEIRNV-LKMLGERITEDQCNDIFTFCDI-REDIDGNIKYEDLM  146 (159)
T ss_dssp             HHHHCTTSSSEECHHHHHHH-HHHSSSCCCHHHHHHHHHHTTC-CCCSSCCEEHHHHH
T ss_pred             HHHHhcCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHHHHHhCc-CCCCCCeEeHHHHH
Confidence            55668899999999886543 4444 57899999877665532 24899999998875

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=83.79  E-value=1.7  Score=36.04  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=35.4

Q ss_pred             hhh-ccCCC-CcChHHHHHHHHHH----h-CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          389 AAD-IDNNG-FVSKSEYVIYKLKE----M-GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       389 ~~d-id~~g-~vs~~ef~~~~L~~----~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ..| .+.+| .++..|+....-.+    + .+.+++++.++   ++++|.|++|+|+.+|.+
T Consensus        30 ~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~l---i~~~D~dgdG~Idf~EF~   88 (113)
T 2lnk_A           30 KYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKL---MSNLDSNRDNEVDFQEYC   88 (113)
T ss_dssp             HTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHH---HHHHCSSSSSCBCHHHHH
T ss_pred             HHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            345 56676 88888755432222    3 24677777754   667799999999999875

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=83.65  E-value=0.72  Score=42.54  Aligned_cols=57  Identities=23%  Similarity=0.430  Sum_probs=45.0

Q ss_pred             hhhhccCCCCcChHHHHHHHHH----HhC---CCCHHHHHHHHHH-hhhccCCCCCccChhhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLK----EMG---KISEKDVMQICHK-FDRLDTGNCGKITLADLMEA  445 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~----~~~---ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~~~  445 (447)
                      ...|.+.+|.++..|+... |.    ..|   ..+++++..+.++ |+..|.|++|+|+..|+...
T Consensus        18 ~~~D~d~~G~i~~~El~~~-l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~   82 (272)
T 2be4_A           18 QHFDADDNGYIEGKELDDF-FRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANM   82 (272)
T ss_dssp             HHHCTTCCSEEEGGGHHHH-HHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHTCCSEEEHHHHHHH
T ss_pred             HHhcCCCCCCcCHHHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEeHHHHHHH
Confidence            4467889999998887654 33    455   6899999988776 59999999999999997643

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=83.59  E-value=0.27  Score=43.74  Aligned_cols=54  Identities=20%  Similarity=0.394  Sum_probs=32.7

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      -+...|.+.+|.++..|+... +...| ++++++.   +-|++.|.|++|+|+..|...
T Consensus        87 ~F~~~D~d~dG~Is~~El~~~-l~~~g-~~~~~~~---~~~~~~D~d~dG~Is~~EF~~  140 (188)
T 1s6i_A           87 AFSYFDKDGSGYITLDEIQQA-CKDFG-LDDIHID---DMIKEIDQDNDGQIDYGEFAA  140 (188)
T ss_dssp             HHHHTTTTCSSEEEHHHHHHT-TTTTT-CCTTHHH---HHHHHHCSSSSSEEETTHHHH
T ss_pred             HHHHHCCCCCCcCcHHHHHHH-HHHcC-CCHHHHH---HHHHHHCCCCCCcEeHHHHHH
Confidence            345556677777777665443 33344 5555544   446666777788887777653

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A

Probab=83.42  E-value=0.81  Score=35.90  Aligned_cols=52  Identities=15%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             hhhh-ccCCC-CcChHHHHHHHHHH---hCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          388 LAAD-IDNNG-FVSKSEYVIYKLKE---MGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       388 ~~~d-id~~g-~vs~~ef~~~~L~~---~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ...| .+.+| .++..|+... +..   .+..+++++.   +-|+++|.|++|+|+..|..
T Consensus        17 ~~~D~~d~dG~~I~~~El~~~-l~~~~~~~~~~~~~i~---~~~~~~D~d~dG~I~f~EF~   73 (92)
T 2kax_A           17 HKYSGREGSKLTLSRKELKEL-IKKELCLGEMKESSID---DLMKSLDKNSDQEIDFKEYS   73 (92)
T ss_dssp             HHHHTTSSCSSEEEHHHHHHH-HHHHSCCTTTCCTTHH---HHHHHHTTTCSSEEEHHHHH
T ss_pred             HHHHhhCCCCCeeCHHHHHHH-HHHHcCCCCCCHHHHH---HHHHHhCCCCCCcCcHHHHH
Confidence            3446 78888 8888886554 333   2246777766   44667799999999999875

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=83.33  E-value=2  Score=36.95  Aligned_cols=41  Identities=17%  Similarity=0.379  Sum_probs=32.9

Q ss_pred             hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChh
Q 013211          390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLA  440 (447)
Q Consensus       390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~  440 (447)
                      .+ +.+|.++..||+.....         ...+.+.|+.+|.|++|.|+.+
T Consensus       122 ~d-d~dg~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~  162 (173)
T 1alv_A          122 YS-DEGGNMDFDNFISCLVR---------LDAMFRAFKSLDKDGTGQIQVN  162 (173)
T ss_dssp             HT-CSSSCBCHHHHHHHHHH---------HHHHHHHHHHHSSSCCSEEEEE
T ss_pred             hc-CCCCcCcHHHHHHHHHH---------HHHHHHHHHHhCCCCCCeecHh
Confidence            45 78899999998766432         3567788999999999999976

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1

Probab=83.32  E-value=0.45  Score=35.22  Aligned_cols=54  Identities=15%  Similarity=0.218  Sum_probs=37.7

Q ss_pred             hhhhc-cCCC-CcChHHHHHHHHHHhCC-C-CHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADI-DNNG-FVSKSEYVIYKLKEMGK-I-SEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~di-d~~g-~vs~~ef~~~~L~~~~k-i-~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|. +.+| .++..|+....-...|. . +++++.   +-|++.|.|++|+|+..|...
T Consensus        14 ~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~---~~~~~~D~~~dg~i~~~eF~~   71 (78)
T 1cb1_A           14 EKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLD---DLFQELDKNGDGEVSFEEFQV   71 (78)
T ss_dssp             HHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSS---HHHHHTCCCSSSSEEHHHHHH
T ss_pred             HHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHH---HHHHHhcCCCCCCCcHHHHHH
Confidence            34577 8889 99988866543223553 4 555555   457778999999999998753

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=83.26  E-value=1.3  Score=39.36  Aligned_cols=62  Identities=11%  Similarity=0.027  Sum_probs=40.2

Q ss_pred             cchhHHHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          381 DMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       381 ~~t~~~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..+..++...--..+|.++-.||+...........  ....+...|+.+|.|++|.|+..||..
T Consensus        89 ~~~~~~~~~l~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~Is~~El~~  150 (196)
T 3dtp_E           89 LCTEQELDSMVAEAPGPINFTMFLTIFGDRIAGTD--EEDVIVNAFNLFDEGDGKCKEETLKRS  150 (196)
T ss_dssp             CCCHHHHHHHHTTSSSCCBHHHHHHHHHHCCCSSC--CHHHHHHHHHTTCSSSSCCBHHHHHHH
T ss_pred             CCCHHHHHHHHHHccCCCcHHHHHHHHHHHhcCCC--cHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            33434433333233888999998776544333222  123456889999999999999999864

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=82.93  E-value=0.84  Score=41.82  Aligned_cols=53  Identities=17%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             hhhccCCCCcChHHHHHHHHHH---------hCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKE---------MGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~---------~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||....-..         ......   .++.+.|+.+|.|++|.|+..|+..
T Consensus        66 ~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~---~~l~~~F~~~D~d~~G~i~~~el~~  127 (263)
T 2f33_A           66 QYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSC---EEFMKTWRKYDTDHSGFIETEELKN  127 (263)
T ss_dssp             HHTTGGGCCBCHHHHHHHTTSCTTHHHHHGGGTSSCH---HHHHHHHTTSSTTTCSSBCHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHhhhhhHHHHHHHhhccHH---HHHHHHHHHHCCCCCCCcCHHHHHH
Confidence            4577888999999987652110         222333   3466899999999999999999864

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=82.91  E-value=0.75  Score=41.09  Aligned_cols=31  Identities=16%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          414 ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++++++..+.+.|+.+|.|++|+|+..|+..
T Consensus        51 l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~   81 (197)
T 3pm8_A           51 LCDVEINNLRNIFIALDVDNSGTLSSQEILD   81 (197)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence            4667777777777777777777777777653

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=82.83  E-value=1.2  Score=39.33  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=38.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHH-HhCC--C------CHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLK-EMGK--I------SEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~-~~~k--i------~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +. ..|.  .      ++++   +.+-|++.|.|++|+|+.+|...
T Consensus       104 F~~~D~d~dG~Is~~El~~~-l~~~~g~~~~~~~~~~~~~~---~~~~~~~~D~d~dG~I~~~EF~~  166 (179)
T 3a8r_A          104 FDMVDKNADGRLTAEEVKEI-IALSASANKLSKIKERADEY---TALIMEELDPTNLGYIEMEDLEA  166 (179)
T ss_dssp             HHHHCTTCSSCBCHHHHHHH-HHHHHHTTHHHHHHHHHHHH---HHHHHHHHSTTCCSEECHHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHHH-HHHHhccccccccccchHHH---HHHHHHHhCCCCCCcCcHHHHHH
Confidence            34468899999998886543 33 4443  2      4444   44668888999999999998763

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=82.76  E-value=0.9  Score=37.17  Aligned_cols=31  Identities=16%  Similarity=0.173  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          413 KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       413 ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+++++..++.+.|+.+|. ++|+|+.+|+..
T Consensus         8 ~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~   38 (106)
T 1eh2_A            8 AVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKP   38 (106)
T ss_dssp             SSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHH
Confidence            4678899999999999999 999999999864

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=82.63  E-value=1.7  Score=39.33  Aligned_cols=33  Identities=12%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          412 GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       412 ~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..++++++.++.+.|+.+|.|++|+|+..|+..
T Consensus        40 ~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~   72 (219)
T 3cs1_A           40 REKTAEAKQRRIELFKKFDKNETGKLCYDEVYS   72 (219)
T ss_dssp             CSSSHHHHHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            678999999999999999999999999999863

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=82.62  E-value=0.98  Score=46.08  Aligned_cols=53  Identities=19%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.|.+|.++..|+... +.. ..++++++.   +-|++.|.|++|+|+.+|+..
T Consensus       424 F~~~D~d~dG~I~~~El~~~-l~~-~~~~~~~~~---~~~~~~D~d~dG~i~~~Ef~~  476 (484)
T 3nyv_A          424 FRMFDSDNSGKISSTELATI-FGV-SDVDSETWK---SVLSEVDKNNDGEVDFDEFQQ  476 (484)
T ss_dssp             HHHHCTTCCSEEEHHHHHHH-HHH-TTCCHHHHH---HHHHHHCTTCCSEEEHHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHHH-HHh-cCCCHHHHH---HHHHHhcCCCCCcCCHHHHHH
Confidence            45568899999999887543 333 778888877   457778999999999999864

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=82.58  E-value=0.86  Score=39.53  Aligned_cols=56  Identities=20%  Similarity=0.079  Sum_probs=37.1

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhC-------CCCHHHH-HHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMG-------KISEKDV-MQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~-------ki~~edv-~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++..||+........       ...++.+ ..+.+.|+..|.|++|.|+.+|+..
T Consensus        70 ~~D~d~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~  133 (191)
T 1uhk_A           70 GAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKA  133 (191)
T ss_dssp             HTTCCTTCEEEHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhCcCCCCcCcHHHHHHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            457788999999998765332211       1111111 1123789999999999999999863

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=82.55  E-value=1  Score=39.79  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=35.0

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..||+..... .....  ....+...|+.+|.|++|.|+.+|+..
T Consensus        53 ~~~D~d~dG~I~~~EF~~~~~~-~~~~~--~~~~l~~~F~~~D~d~dG~Is~~El~~  106 (188)
T 1s6i_A           53 DAADIDKSGTIDYGEFIAATVH-LNKLE--REENLVSAFSYFDKDGSGYITLDEIQQ  106 (188)
T ss_dssp             HHTCTTCSSEECHHHHHHHHTT-SSSSC--CCCSTHHHHHHTTTTCSSEEEHHHHHH
T ss_pred             HHcCCCCCCeEeHHHHHHHHHH-HhccC--HHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            3456677788888887665322 11111  112355778888999999998888764

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=82.52  E-value=1.4  Score=38.02  Aligned_cols=58  Identities=28%  Similarity=0.473  Sum_probs=37.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH---hCC-----CCHHH-HHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE---MGK-----ISEKD-VMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~---~~k-----i~~ed-v~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-..   .|.     ++++. -..+.+-|++.|.|++|+|+.+|+..
T Consensus        98 f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~  164 (183)
T 1s6c_A           98 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE  164 (183)
T ss_dssp             HHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            344688899999999876543222   143     33321 13455678889999999999999864

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=82.50  E-value=1.2  Score=38.55  Aligned_cols=52  Identities=12%  Similarity=0.158  Sum_probs=38.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...| +.+|.++..|... .|...+ ++++++.+|   ++..|.|++|+|+.+|...
T Consensus        57 F~~fD-d~dG~Is~~El~~-~l~~~g-l~~~el~~I---~~~~D~d~dG~Ld~~EF~~  108 (139)
T 2jq6_A           57 FYTLS-PVNGKITGANAKK-EMVKSK-LPNTVLGKI---WKLADVDKDGLLDDEEFAL  108 (139)
T ss_dssp             HHHSC-CSSSEEEHHHHHH-HHHHTT-CCHHHHHHH---HHHHCSSCCSEEEHHHHHH
T ss_pred             HHHhC-CCCCeECHHHHHH-HHHHhC-cCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            34568 8999988877543 344444 888887755   5568999999999998763

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=82.45  E-value=0.97  Score=38.00  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=39.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++..+   |+..|.| +|+|+..|...
T Consensus        93 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~---~~~~d~~-dg~i~~~eF~~  146 (156)
T 1wdc_B           93 FAMFDEQETKKLNIEYIKDL-LENMGDNFNKDEMRMT---FKEAPVE-GGKFDYVKFTA  146 (156)
T ss_dssp             HHTTCTTCCSCEEHHHHHHH-HHHSSSCCCHHHHHHH---HHHCCEE-TTEECHHHHHH
T ss_pred             HHHHCcCCCCccCHHHHHHH-HHHhCCCCCHHHHHHH---HHhcCCC-CCEEeHHHHHH
Confidence            44567889999998887654 44444 6788887755   6667888 99999998764

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A

Probab=82.33  E-value=0.76  Score=35.87  Aligned_cols=54  Identities=17%  Similarity=0.202  Sum_probs=36.8

Q ss_pred             Hhhhhc-cCCC-CcChHHHHHHHHHHhCC-CCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADI-DNNG-FVSKSEYVIYKLKEMGK-ISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~di-d~~g-~vs~~ef~~~~L~~~~k-i~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|. +.+| .++..|+....-...|. .+++   ++.+-|+++|.|++|+|+..|..
T Consensus        16 F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~---~~~~l~~~~D~d~dG~I~~~EF~   72 (93)
T 1xk4_A           16 YHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKK---GADVWFKELDINTDGAVNFQEFL   72 (93)
T ss_dssp             HHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTT---CHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             HHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHH---HHHHHHHHhCCCCCCCCcHHHHH
Confidence            344577 8899 99988865432144442 2223   34566888999999999999875

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=82.22  E-value=0.39  Score=38.18  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=39.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...    ...+++++.   +-|++.|.|++|+|+..|...
T Consensus        47 F~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~---~~~~~~D~d~dg~i~~~eF~~  104 (108)
T 2kyc_A           47 FRILDNDQSGFIEEDELKYF-LQRFESGARVLTASETK---TFLAAADHDGDGKIGAEEFQE  104 (108)
T ss_dssp             CSSSCSCCSSCCCGGGTTTS-HHHHSSSCCCCCTTTTH---HHHTTTCCSSSSCCCSSHHHH
T ss_pred             HHHhCCCCCCeEcHHHHHHH-HHHHhhccCCCCHHHHH---HHHHHhCCCCCCcCCHHHHHH
Confidence            34457888999998886543 3343    357777766   557788999999999998764

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=82.20  E-value=2.2  Score=36.30  Aligned_cols=39  Identities=21%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             cCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChh
Q 013211          393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLA  440 (447)
Q Consensus       393 d~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~  440 (447)
                      +.+|.++..||.......         ..+.+.|+..|.|++|.|+.+
T Consensus       116 d~dg~i~~~eF~~~~~~~---------~~~~~~F~~~D~d~~G~i~~~  154 (165)
T 1k94_A          116 SKNGRIFFDDYVACCVKL---------RALTDFFRKRDHLQQGSANFI  154 (165)
T ss_dssp             CBTTBCBHHHHHHHHHHH---------HHHHHHHHTTCTTCCSEEEEE
T ss_pred             CCCCeEcHHHHHHHHHHH---------HHHHHHHHHhCCCCCCeEeee
Confidence            667777777776553322         456678888899999988876

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=82.08  E-value=0.29  Score=36.90  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             HHHHHHHhhhccCCCCCccChhhhhh
Q 013211          419 VMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       419 v~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...+.+.|+..|.|++|.|+..|+..
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~el~~   31 (83)
T 1yx7_A            6 KAELEAAFKKLDANGDGYVTALELQT   31 (83)
T ss_dssp             CTHHHHHHHHHSSSCSSSCSHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            34677889999999999999999864

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A

Probab=81.83  E-value=0.56  Score=35.81  Aligned_cols=53  Identities=15%  Similarity=0.355  Sum_probs=36.8

Q ss_pred             Hhhhh-ccCCC-CcChHHHHHHHHHH---hC-CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAAD-IDNNG-FVSKSEYVIYKLKE---MG-KISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~d-id~~g-~vs~~ef~~~~L~~---~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...| .+.+| .++..|+... +..   .| ..+++++.   +-|++.|.|++|+|+.+|..
T Consensus        16 F~~~D~~d~~G~~i~~~el~~~-l~~~~~~g~~~~~~~~~---~~~~~~D~~~dg~i~~~eF~   74 (90)
T 1k8u_A           16 FHKYSGREGDKHTLSKKELKEL-IQKELTIGSKLQDAEIA---RLMEDLDRNKDQEVNFQEYV   74 (90)
T ss_dssp             HHHHHTSSSCTTEEEHHHHHHH-HHHHSCCGGGTTSHHHH---HHHHHHHHTTTCEEEHHHHH
T ss_pred             HHHHhccCCCCCcCCHHHHHHH-HHHhcccCCCCCHHHHH---HHHHHhCCCCCCCCcHHHHH
Confidence            34457 48889 8888886543 443   33 45666665   45667788999999999875

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A

Probab=81.33  E-value=1.6  Score=34.02  Aligned_cols=51  Identities=20%  Similarity=0.430  Sum_probs=36.0

Q ss_pred             hhh-ccCCC-CcChHHHHHHHHH-Hh-----CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          389 AAD-IDNNG-FVSKSEYVIYKLK-EM-----GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       389 ~~d-id~~g-~vs~~ef~~~~L~-~~-----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ..| .+.+| .++..|+... +. ..     ...+++++.   +-|+++|.|++|+|+..|..
T Consensus        21 ~~Dd~d~~G~~I~~~el~~~-l~~~~~~~~~~~~~~~~~~---~l~~~~D~~~dg~I~~~EF~   79 (99)
T 1qls_A           21 KHAGRDGNNTKISKTEFLIF-MNTELAAFTQNQKDPGVLD---RMMKKLDLDSDGQLDFQEFL   79 (99)
T ss_dssp             HHHTTSSCTTCBCHHHHHHH-HTTTSHHHHHHCCCTHHHH---HHHHHHCTTCSSSBCHHHHH
T ss_pred             HHHhcCCCcCeeCHHHHHHH-HHHHcchhccccCCHHHHH---HHHHHhCCCCCCcCcHHHHH
Confidence            345 78888 9988886543 32 11     356666665   55677899999999999875

>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}

Probab=80.76  E-value=1.2  Score=37.55  Aligned_cols=48  Identities=17%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             hccCCCCcChHHHHHHHHH------HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLK------EMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~------~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      |.+ +|.++..|+... |.      .....+++++.   +-++++|.|++|+|+..|.+
T Consensus        25 d~d-dG~Is~~EL~~~-l~~~~~~~l~~~~~~~~v~---~~i~~~D~d~DG~IdF~EF~   78 (121)
T 4drw_A           25 AGD-KGYLTKEDLRVL-MEKEFPGFLENQKDPLAVD---KIMKDLDQCRDGKVGFQSFF   78 (121)
T ss_dssp             SCT-TCSCCHHHHHHH-TTTSCHHHHTTSSCTTHHH---HHHHHHCTTCSSCCCHHHHH
T ss_pred             cCC-CCEEcHHHHHHH-HHHHhhhhcccCCCHHHHH---HHHHHHcCCCCCcCcHHHHH
Confidence            445 799998885433 21      23455666666   55788899999999999875

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=80.75  E-value=2.5  Score=36.69  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=40.6

Q ss_pred             HhhhhccCCCCcChHHHHH----HHHHHhCCCC-HHHH--HHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVI----YKLKEMGKIS-EKDV--MQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~----~~L~~~~ki~-~edv--~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+..    ..+...|.-. ++++  ..+.+-|+..|.|++|+|+..|...
T Consensus        26 F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~   90 (195)
T 1qv0_A           26 FDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLD   90 (195)
T ss_dssp             HHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHH
T ss_pred             HhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHH
Confidence            3456889999999999863    2345555432 2221  1456678899999999999998764

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=80.48  E-value=0.93  Score=46.86  Aligned_cols=52  Identities=19%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ..|.|.+|.++..|+....-.....++++++..+   |++.|.|++|+|+.+|.+
T Consensus       393 ~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~L---f~~~D~D~DG~IsfdEFv  444 (450)
T 3sg6_A          393 VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFV  444 (450)
T ss_dssp             HHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHH---HHHHCTTSSSSEEHHHHH
T ss_pred             HhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            3444445555554443332222234444444422   333344555555555443

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=80.37  E-value=2.5  Score=37.21  Aligned_cols=49  Identities=16%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             cCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       393 d~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +.+|.++..||..........   .....+...|+..|.|++|+|+..||..
T Consensus        74 ~~~~~i~~~ef~~~~~~~~~~---~~~~~l~~~F~~~D~d~dG~Is~~El~~  122 (179)
T 3a8r_A           74 IVKQVLTKDELKDFYEQLTDQ---GFDNRLRTFFDMVDKNADGRLTAEEVKE  122 (179)
T ss_dssp             CCSSEECHHHHHHHHHHHHCC---CHHHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence            345667777776553222221   2345677899999999999999999864

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=80.25  E-value=1.2  Score=40.67  Aligned_cols=58  Identities=28%  Similarity=0.469  Sum_probs=39.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH---hCC-----CCHH-HHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE---MGK-----ISEK-DVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~---~~k-----i~~e-dv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-..   +|+     ++++ .-..+.+-|++.|.|++|+|+.+|+..
T Consensus       131 F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~  197 (224)
T 1s1e_A          131 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE  197 (224)
T ss_dssp             HHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            345688999999999976553221   243     2321 123455678889999999999999864

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=80.18  E-value=3.3  Score=37.68  Aligned_cols=58  Identities=17%  Similarity=0.350  Sum_probs=43.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHH----hCCCCHHHHHHHHH-HhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKE----MGKISEKDVMQICH-KFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~----~~ki~~edv~~i~~-~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-..    ....+++++..+.+ -|+..|.+++|+|+..|...
T Consensus       109 F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~  171 (263)
T 2f33_A          109 WRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMAR  171 (263)
T ss_dssp             HTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHHH
T ss_pred             HHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHHH
Confidence            345678899999988865542222    35678888876444 68999999999999998764

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=80.17  E-value=2.1  Score=37.18  Aligned_cols=53  Identities=23%  Similarity=0.405  Sum_probs=37.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCC--------CccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNC--------GKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~--------G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +. ...++++++..+   |++.|.|++        |+|+.+|...
T Consensus       114 F~~~D~d~~G~I~~~El~~~-l~-~~~~~~~~~~~~---~~~~d~~~d~~~~~~~~G~i~~~eF~~  174 (180)
T 3mse_B          114 FNKIDKDEDGYISKSDIVSL-VH-DKVLDNNDIDNF---FLSVHSIKKGIPREHIINKISFQEFKD  174 (180)
T ss_dssp             HHHHCTTCSSCBCHHHHHHH-TT-TSSCCHHHHHHH---HHHHHTC---------CCCBCHHHHHH
T ss_pred             HHHHCCCCCCCCCHHHHHHH-Hc-CCCCCHHHHHHH---HHHhhhccCcccccccCCeeeHHHHHH
Confidence            45568889999999886554 22 567888888865   455566656        9999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	9e-14
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	2e-12
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	2e-13
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	5e-08
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	2e-09
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	4e-06
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	4e-09
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	9e-05
d1s6ja_	87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	0.001
d1avsa_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	0.002
d1fi5a_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	0.002

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 64.0 bits (156), Expect = 9e-14
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
           ++L++  +  G   + F        E      +LY+  VT+ T+GYGD +P T     F+
Sbjct: 6   LLLVLAVIIYGTAGFHF-------IEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFT 58

Query: 227 ILFVLVGFGFVDILLTGMVSYV 248
           +  +++G G   + +  ++ ++
Sbjct: 59  VTLIVLGIGTFAVAVERLLEFL 80

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 291 LGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVS 350
           L +V+  I  G    HF+E   W  S Y + +++ TVGYGD +  +  G  F    +++ 
Sbjct: 6   LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLG 65

Query: 351 TLAVARAFLYLAEA 364
               A A   L E 
Sbjct: 66  IGTFAVAVERLLEF 79

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 17/89 (19%), Positives = 42/89 (47%)

Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
           A VLL++ L  G  +          ++      AL++ + T  T+GYGD+ P T+  +  
Sbjct: 11  ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 70

Query: 226 SILFVLVGFGFVDILLTGMVSYVLDLQEN 254
           +++ ++ G     ++   + ++ +  ++ 
Sbjct: 71  AVVVMVAGITSFGLVTAALATWFVGREQE 99

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
              A  ++V+ +  G  +    E+       + +  + + SV + TTVGYGD    ++ G
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67

Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKRHRK 372
           R  A + ++    +       LA   V +   +
Sbjct: 68  RCVAVVVMVAGITSFGLVTAALATWFVGREQER 100

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 17/80 (21%), Positives = 29/80 (36%)

Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
             L ++  +L    Y         +      DA +F + TM TIGYG + P         
Sbjct: 32  TGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLV 91

Query: 227 ILFVLVGFGFVDILLTGMVS 246
            L  L G   + +  + + +
Sbjct: 92  TLEALCGMLGLAVAASLIYA 111

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKL-------GWLDSFYLSVMSVTTVGYGDR 332
            +   + + L  G+ ++   +          +        + D+F+ SV ++ T+GYG  
Sbjct: 21  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 80

Query: 333 AFKSMPGRLFASIWLLVSTLAVA 355
                      ++  L   L +A
Sbjct: 81  IPIGPLANTLVTLEALCGMLGLA 103

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
             L ++  +L   +Y               V A +F + T+ T+GYGD+ P+TV     +
Sbjct: 33  AALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIA 92

Query: 227 ILFVLVGFGFVDILLTGMVS 246
            L + VG   + +    + +
Sbjct: 93  TLEIFVGMSGIALSTGLVFA 112

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 269 PGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVM---------HFVEKLGWLDSFYL 319
           P S   D+    +++   V  A    +  +   +  +               G++ +F+ 
Sbjct: 9   PASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFF 68

Query: 320 SVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVA 355
           SV ++ TVGYGD   +++     A++ + V    +A
Sbjct: 69  SVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIA 104

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 15/88 (17%)

Query: 365 RVDKRHRKMAKWVLGQDMTVAE-------FLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
            +D   + MA     + ++  E       F   D DN+G ++  E      +   ++ E 
Sbjct: 5   HIDDDDKHMA-----ERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMES 59

Query: 418 DVMQICHKFDRLDTGNCGKITLADLMEA 445
           ++  +    D     + G I   + + A
Sbjct: 60  EIKDLMDAADI--DKS-GTIDYGEFIAA 84

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 371 RKMAKWVLGQDMTVAEFLAA----DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKF 426
           +  A+  L ++M +AEF AA    D D  G +S  E            +++++  I    
Sbjct: 1   QAEARAFLSEEM-IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---I 56

Query: 427 DRLDTGNCGKITLADLME 444
           + +D    G I   + + 
Sbjct: 57  EEVDEDGSGTIDFEEFLV 74

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
           F   D + +G++   E  I        I+E D+ ++       D  N G+I   + +E
Sbjct: 21  FRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL---MKDGDKNNDGRIDYDEFLE 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.68
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.65
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.55
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.49
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.46
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.39
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.39
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.38
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.43
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.34
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	95.34
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	95.12
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	95.09
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	94.97
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	94.89
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	94.42
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	94.4
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	94.28
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	93.86
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	93.72
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	93.56
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	93.52
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	93.48
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	93.37
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	93.1
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	92.83
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	92.73
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	92.6
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	92.58
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	92.54
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	92.51
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	92.21
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	92.21
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	92.16
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	92.11
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	91.49
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	91.13
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	90.85
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	90.83
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	90.11
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	90.06
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	89.98
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	89.59
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	89.51
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	89.5
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	89.48
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	89.47
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	89.08
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	88.81
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	88.46
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	88.37
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	88.08
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	88.04
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	87.93
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	87.85
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	87.77
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	87.71
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	87.53
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	87.29
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	87.15
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	86.66
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	86.61
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	86.53
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	86.51
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	86.38
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	86.24
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	85.93
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	85.9
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	85.9
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	85.87
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	85.86
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	85.85
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	85.83
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	85.1
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	84.37
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	84.22
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	83.85
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	83.71
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	83.55
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	83.54
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	83.26
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	83.25
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	82.96
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	82.9
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	82.84
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	82.83
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	82.81
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	82.43
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	81.98
d3c1va1	93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	81.95
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	81.94
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	81.87
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	81.84
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	81.62
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	81.6
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	81.56
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	81.32
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	80.44
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	80.28
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	80.25
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	80.11

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.68  E-value=9.8e-17  Score=132.79  Aligned_cols=85  Identities=22%  Similarity=0.282  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 013211          288 ALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLY  360 (447)
Q Consensus       288 ~l~l~i~~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~  360 (447)
                      ...+.++++++++++.++++.|+       .++.||+||+++|+|||||||++|.|..||+++++++++|+.+++..++.
T Consensus         9 ~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~   88 (103)
T d1r3jc_           9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAA   88 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556678888888875       47999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013211          361 LAEARVDKRHRK  372 (447)
Q Consensus       361 l~~~~~~~~~r~  372 (447)
                      +++.+.++++++
T Consensus        89 i~~~~~~~~~~r  100 (103)
T d1r3jc_          89 LATWFVGREQER  100 (103)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999888765543

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.65  E-value=8.7e-17  Score=133.10  Aligned_cols=89  Identities=19%  Similarity=0.389  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013211          165 QAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGM  244 (447)
Q Consensus       165 ~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~  244 (447)
                      ..++++++.+++++.++++.++...+....+|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+
T Consensus        10 ~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i   89 (103)
T d1r3jc_          10 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAAL   89 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555554444445566789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013211          245 VSYVLDLQE  253 (447)
Q Consensus       245 ~~~l~~~~~  253 (447)
                      .+.+.+.++
T Consensus        90 ~~~~~~~~~   98 (103)
T d1r3jc_          90 ATWFVGREQ   98 (103)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988876543

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.55  E-value=5.8e-17  Score=128.13  Aligned_cols=69  Identities=29%  Similarity=0.446  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          295 VLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAE  363 (447)
Q Consensus       295 ~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~  363 (447)
                      +.++.+|+..++..|+|++.||+||+++|+|||||||++|.|..||+++++++++|+.+++.+++.+++
T Consensus        10 ~~~~~~g~~~~~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2          10 LAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345568899999999999999999999999999999999999999999999999999999988887764

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.49  E-value=1.4e-14  Score=122.06  Aligned_cols=90  Identities=20%  Similarity=0.347  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHH
Q 013211          159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVD  238 (447)
Q Consensus       159 ~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~  238 (447)
                      ++..+......+++..++++++|+.+++...+.+.++|.||+||+++|+|||||||++|.+..||+++++++++|+.+++
T Consensus        25 ~~~~l~~~~~~~~~~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a  104 (116)
T d1p7ba2          25 WPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIA  104 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHH
Confidence            44555444444555556667777777777777788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013211          239 ILLTGMVSYV  248 (447)
Q Consensus       239 ~~~~~~~~~l  248 (447)
                      +.++.+...+
T Consensus       105 ~~~g~i~~~~  114 (116)
T d1p7ba2         105 LSTGLVFARF  114 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888776554

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.46  E-value=3.1e-14  Score=119.80  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHH
Q 013211          159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVD  238 (447)
Q Consensus       159 ~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~  238 (447)
                      ++..+....+..++..++.+++|+...+...+.+.++|.||+||+++|+|||||||++|.+..||++++++++.|+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a  103 (116)
T d1xl4a2          24 WPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLA  103 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHH
Confidence            44444444444444445556677766666667778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013211          239 ILLTGMVSYV  248 (447)
Q Consensus       239 ~~~~~~~~~l  248 (447)
                      +.++.+...+
T Consensus       104 ~~~g~i~~~f  113 (116)
T d1xl4a2         104 VAASLIYARF  113 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9888766544

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.39  E-value=5.2e-13  Score=112.13  Aligned_cols=54  Identities=22%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEA  364 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~  364 (447)
                      ++|.||+||+++|+|||||||++|.+..||+++++++++|+++++..++.+...
T Consensus        59 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~  112 (116)
T d1xl4a2          59 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYAR  112 (116)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999888776643

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.39  E-value=1.7e-15  Score=119.60  Aligned_cols=71  Identities=25%  Similarity=0.539  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013211          169 LLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVS  246 (447)
Q Consensus       169 ~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~  246 (447)
                      ++++++++|+..++..       |+|++.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+.+
T Consensus         8 ~~~~~~~~g~~~~~~~-------e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2           8 LVLAVIIYGTAGFHFI-------EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TTTTSHHHHTTTTTTS-------SSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH-------hCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777777654       4599999999999999999999999999999999999999999999988877654

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.38  E-value=3.5e-13  Score=113.30  Aligned_cols=53  Identities=25%  Similarity=0.418  Sum_probs=49.9

Q ss_pred             cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211          311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAE  363 (447)
Q Consensus       311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~  363 (447)
                      ++|.||+||+++|+|||||||++|.+..||+++++.+++|+++++..++.+..
T Consensus        60 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~  112 (116)
T d1p7ba2          60 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA  112 (116)
T ss_dssp             SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999988877764

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.43  E-value=1.7e-07  Score=67.91  Aligned_cols=44  Identities=20%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhcccc
Q 013211          286 KVALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGY  329 (447)
Q Consensus       286 ~l~l~l~i~~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGy  329 (447)
                      .+..++.++++.+++++.++++.|+       -++.||+||+++|+|||||
T Consensus         7 ~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            3444455555555667777777774       4689999999999999998

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.34  E-value=1.9e-07  Score=67.59  Aligned_cols=53  Identities=21%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeecc
Q 013211          159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGY  212 (447)
Q Consensus       159 ~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGY  212 (447)
                      ++.+....++++++.++.+.++|+.|++. ++....++.||+||+++|+|||||
T Consensus         5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~~~-~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           5 WRAAGAATVLLVIVLLAGSYLAVLAERGA-PGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccccccchhhhhheeeeecccC
Confidence            45566666666667677788888887654 344578999999999999999999

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.34  E-value=0.0098  Score=42.94  Aligned_cols=54  Identities=17%  Similarity=0.340  Sum_probs=41.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+... ++.+ ..++++++.   +-|+..|.|++|+|+..|...
T Consensus         7 F~~~D~d~~G~I~~~El~~~-l~~lg~~~~~~~i~---~~~~~~D~d~dg~I~~~EF~~   61 (67)
T d1tiza_           7 FEKFDKNKDGKLSLDEFREV-ALAFSPYFTQEDIV---KFFEEIDVDGNGELNADEFTS   61 (67)
T ss_dssp             HHHHCTTSSSCEEHHHHHHH-HHHTCTTSCHHHHH---HHHHHHCCSSSSEECHHHHHH
T ss_pred             HHHHCCCCcCcCcHHHHHHH-HHHhccccchHHHH---HHHHHhCCCCCCeEeHHHHHH
Confidence            45568899999999998765 4444 567777766   557777999999999999764

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.05  Score=40.53  Aligned_cols=56  Identities=13%  Similarity=0.284  Sum_probs=46.2

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+...|.+.+|.++..|+....-.....++++++.   .-|..+|.|++|+|+-.|.+.
T Consensus        25 ~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~---~l~~~~d~~~~g~I~y~eFl~   80 (83)
T d1wlza1          25 EFENFDTMKTNTISREEFRAICNRRVQILTDEQFD---RLWNEMPVNAKGRLKYPDFLS   80 (83)
T ss_dssp             HHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHH---HHHTTSCBCTTSCBCHHHHHH
T ss_pred             HHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHH---HHhhccccCCCCcEeHHHHHH
Confidence            45678999999999999877655555689999987   448888999999999998764

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=95.09  E-value=0.0063  Score=44.83  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=28.8

Q ss_pred             CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          413 KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       413 ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +++++++.++.+.|+..|.|++|.|+..|+..
T Consensus         1 qLs~eei~el~~~F~~~D~d~~G~I~~~el~~   32 (73)
T d2pq3a1           1 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGT   32 (73)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTSSSEEEGGGHHH
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCceEeHHHHHH
Confidence            46889999999999999999999999999864

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=94.97  E-value=0.012  Score=44.20  Aligned_cols=54  Identities=26%  Similarity=0.427  Sum_probs=43.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+.. .|..+|..+++++.   +-|++.|.|++|.|+..|...
T Consensus        12 F~~~D~d~~G~I~~~El~~-~l~~lg~~~~~ei~---~~~~~~D~d~~G~I~~~EF~~   65 (81)
T d2opoa1          12 FKRFDTNGDGKISSSELGD-ALKTLGSVTPDEVR---RMMAEIDTDGDGFISFDEFTD   65 (81)
T ss_dssp             HHHHCTTCSSEEEHHHHHH-HHHTTTTCCHHHHH---HHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHHCCCCCCCCcHHHHHH-HHHHhhcCCHHHHH---HHHHHhCCCCCCeEeHHHHHH
Confidence            3456889999999888755 47788889988766   557888999999999998764

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.0073  Score=44.86  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          413 KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       413 ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +++++++.++.+.|+..|.|++|+|+..||..
T Consensus         3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~   34 (77)
T d1f54a_           3 NLTEEQIAEFKEAFALFDKDNNGSISSSELAT   34 (77)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeEChHHHHH
Confidence            57889999999999999999999999999864

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=94.42  E-value=0.014  Score=36.72  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.+.|+..|.|++|.|+..||..
T Consensus         4 el~eAF~~FDkDg~G~Is~~EL~~   27 (33)
T d2hf5a1           4 EIREAFRVFDKDGNGYISAAELRH   27 (33)
T ss_dssp             HHHHHHHHHSSSCCSCBCHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHH
Confidence            566899999999999999999864

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.40  E-value=0.033  Score=39.26  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=42.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+....-..-..++++++..   -|+..|.|++|+|+..|.++
T Consensus         7 F~~fD~~~~G~I~~~el~~~l~~~g~~~~~~ei~~---l~~~~D~d~dg~I~~~eFl~   61 (61)
T d2fcea1           7 FQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDE---LLKGVEVDSNGEIDYKKFIE   61 (61)
T ss_dssp             HHHHCTTCCSCEEHHHHHHHHHHTTCCCCHHHHHH---HHTTCCCCTTSEECHHHHHH
T ss_pred             HHHHCCCCCCeEeHHHHHHHHHHcCCCCCHHHHHH---HHHHcCCCCCCcEeHHHhcC
Confidence            45678899999999987665433335688888774   47789999999999998763

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.28  E-value=0.011  Score=48.73  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=10.5

Q ss_pred             HHHHhhhccCCCCCccChhhh
Q 013211          422 ICHKFDRLDTGNCGKITLADL  442 (447)
Q Consensus       422 i~~~F~~ld~~~~G~l~~~dl  442 (447)
                      +.+.|+..|.+++|.|+..||
T Consensus        78 l~~aF~~~D~d~~G~I~~~el   98 (140)
T d1ggwa_          78 FVKGFQVFDKDATGMIGVGEL   98 (140)
T ss_dssp             HHHHHHTTCSSCSSCCCHHHH
T ss_pred             HHHHHHHHhccCCCcchHHHH
Confidence            334455555555555555544

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=93.86  E-value=0.046  Score=40.18  Aligned_cols=54  Identities=15%  Similarity=0.215  Sum_probs=41.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+.+|.++..|+....-.....++++++..   -|++.|.|++|+|+..|..
T Consensus        15 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~---~~~~~D~d~~G~I~~~EF~   68 (77)
T d1oqpa_          15 FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQE---MIAEADRNDDNEIDEDEFI   68 (77)
T ss_dssp             HHHHCTTCSSSEEHHHHHHHHHHHTCCCCHHHHHH---HHHHHCCSSSSEECHHHHH
T ss_pred             HHHHcCCCCCEechHHHHHHHHHhCCCCCHHHHHH---HHHHhCCCCCCcEeHHHHH
Confidence            34568899999999887665444446678887774   5678899999999999865

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.72  E-value=0.048  Score=44.59  Aligned_cols=64  Identities=13%  Similarity=0.160  Sum_probs=42.4

Q ss_pred             cccchhHHHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          379 GQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       379 ~~~~t~~~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...+..++.....+.+|.++-.+|+......+.....+  ..+.+.|+..|.|++|+|+..||..
T Consensus        37 g~~~~~~el~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~--~~l~~aF~~~D~d~~G~I~~~el~~  100 (142)
T d1wdcb_          37 GRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSE--ETIRNAFAMFDEQETKKLNIEYIKD  100 (142)
T ss_dssp             SSCCCHHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCCCH--HHHHHHHHTTCTTCCSCEEHHHHHH
T ss_pred             hcCCCHHHHHHHHHhccCccccccccccccccccccchh--hhHHHhhhhhcccCCCcccHHHHHH
Confidence            455566666665556677778888776655555443322  2455778888888888888888753

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=93.56  E-value=0.055  Score=43.95  Aligned_cols=55  Identities=22%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+..........++++++..+   |+..|.|++|+|+..|.++
T Consensus        88 F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~i---~~~~D~d~dG~i~~~eF~~  142 (146)
T d1exra_          88 FKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEM---IREADIDGDGHINYEEFVR  142 (146)
T ss_dssp             HHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHH---HHHHCSSSSSSBCHHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHHHHHHhhcCCHHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            445688999999999976654445567788888755   6677899999999998763

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=93.52  E-value=0.031  Score=41.78  Aligned_cols=55  Identities=24%  Similarity=0.404  Sum_probs=42.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+....-....+++++++..+   |.+.|.|++|+|+.+|.+.
T Consensus        21 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ev~~~---~~~~D~d~dg~I~~~EF~~   75 (81)
T d1fi5a_          21 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL---MKDGDKNNDGRIDYDEFLE   75 (81)
T ss_dssp             HHHHCSSCSSEECHHHHHHHHHTSSSCCCHHHHHHH---HHHHCSSSSSSEEHHHHHH
T ss_pred             HHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHH---HHHHCCCCCCcEeHHHHHH
Confidence            455789999999999976654444466788887755   6677999999999998763

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.48  E-value=0.02  Score=42.91  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          414 ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++++++.++.+.|+..|.|++|+|+..||..
T Consensus         8 Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~   38 (81)
T d1avsa_           8 LSEEMIAEFKAAFDMFDADGGGDISTKELGT   38 (81)
T ss_dssp             BCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEchhHHHH
Confidence            6889999999999999999999999999853

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=93.37  E-value=0.019  Score=43.02  Aligned_cols=30  Identities=30%  Similarity=0.476  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          415 SEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       415 ~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      |++++.++.+.|+..|.|++|+|+..||..
T Consensus         1 T~ee~~e~~~~F~~~D~d~~G~I~~~El~~   30 (81)
T d2opoa1           1 TPQDIADRERIFKRFDTNGDGKISSSELGD   30 (81)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHH
Confidence            578999999999999999999999999864

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=93.10  E-value=0.0048  Score=47.28  Aligned_cols=55  Identities=24%  Similarity=0.371  Sum_probs=42.6

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      -+...|.+++|.++..|+... +... .+.+++++.   +-|.+.|.|++|+|+..|.+.
T Consensus        28 ~F~~~D~d~~G~I~~~el~~~-l~~lg~~~s~~e~~---~l~~~~D~d~~g~I~~~EFl~   83 (87)
T d1s6ja_          28 LFKMIDTDNSGTITFDELKDG-LKRVGSELMESEIK---DLMDAADIDKSGTIDYGEFIA   83 (87)
T ss_dssp             HHHHHCTTCSSCEEHHHHHHH-HHTTTSSCCHHHHH---HHHHHHCTTCSSEECHHHHTT
T ss_pred             HHHHHcCCCCCcCcHHHHHHH-HHHcCCCCCHHHHH---HHHHHcCCCCCCeEeHHHHHH
Confidence            366778899999998886554 4444 458888776   557788999999999998764

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.83  E-value=0.062  Score=39.46  Aligned_cols=55  Identities=20%  Similarity=0.346  Sum_probs=42.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+....-.....++++++..+   |++.|.|++|+|+..|.+.
T Consensus        15 F~~fD~~~~G~I~~~el~~~l~~lg~~~~~~e~~~~---~~~~D~d~dg~I~~~EF~~   69 (75)
T d1jc2a_          15 FRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDL---MKDSDKNNDGRIDFDEFLK   69 (75)
T ss_dssp             HHHHCCSTTSSEEHHHHHHHHHHSSSCCCHHHHHHH---HHHHCSSSCSEECHHHHHH
T ss_pred             HHHHcCCCcCeEcHHHHHHHHHhcCCCccHHHHHHH---HHHhCCCCCCcEeHHHHHH
Confidence            345688999999999876664444467788887754   6788999999999998763

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=92.73  E-value=0.053  Score=46.02  Aligned_cols=54  Identities=26%  Similarity=0.403  Sum_probs=39.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +...| .++++++.   +-|+.+|.|++|+|+.+|+..
T Consensus       113 F~~~D~d~~G~is~~E~~~~-l~~~g~~~~~~~~~---~lf~~~D~d~dG~Is~~EF~~  167 (189)
T d1qv0a_         113 FDIFDKDGSGTITLDEWKAY-GKISGISPSQEDCE---ATFRHCDLDNAGDLDVDEMTR  167 (189)
T ss_dssp             HHHTC----CEECHHHHHHH-HHHHSSCCCHHHHH---HHHHHSCCCTTSCEEHHHHHH
T ss_pred             HHHHccCCCCcccchhhHHH-HHhcCCCCCHHHHH---HHHHHhCCCCCCcEeHHHHHH
Confidence            45568899999999997766 55554 58888876   558888999999999999864

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.60  E-value=0.071  Score=39.12  Aligned_cols=54  Identities=26%  Similarity=0.289  Sum_probs=41.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+.+|.++..|+....-..--+.+++++.   +-|++.|.+++|+|+.+|..
T Consensus        16 F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~---~~~~~~D~~~~g~I~~~eF~   69 (77)
T d1f54a_          16 FALFDKDNNGSISSSELATVMRSLGLSPSEAEVN---DLMNEIDVDGNHQIEFSEFL   69 (77)
T ss_dssp             HHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHH---HHHHTTCCSSCCEEEHHHHH
T ss_pred             HHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHH---HHHHHhCCCCCCeEeHHHHH
Confidence            4557889999999988766543444567777776   55677799999999999875

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=92.58  E-value=0.048  Score=39.75  Aligned_cols=55  Identities=16%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++.   +-|+..|.|++|+|+.+|.+.
T Consensus        14 F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~---~~~~~~D~d~~g~I~f~eF~~   68 (73)
T d2pq3a1          14 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQ---DMINEVDADGNGTIDFPEFLT   68 (73)
T ss_dssp             HHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHH---HHHHHHCTTCSSEEEHHHHHH
T ss_pred             HHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHH---HHHHHhCCCCCCeEeHHHHHH
Confidence            4557889999999998665543334557888877   445666999999999998753

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=92.54  E-value=0.068  Score=45.07  Aligned_cols=54  Identities=24%  Similarity=0.372  Sum_probs=42.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+... |+.. ...+++++.   +-|+..|.|++|+|+..|.+.
T Consensus       111 F~~~D~d~~G~Is~~El~~~-l~~~g~~~~~~~~~---~lf~~~D~d~dG~Is~~EF~~  165 (187)
T d1uhka1         111 FDIVDKDQNGAITLDEWKAY-TKAAGIIQSSEDCE---ETFRVCDIDESGQLDVDEMTR  165 (187)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHHTSCCSHHHHH---HHHHHSCCCTTSCEEHHHHHH
T ss_pred             HHHHccCCCcccchHHHHHH-HHHhCCCccHHHHH---HHHHHhCCCCCCCEeHHHHHH
Confidence            44568899999999997655 4444 457888766   668888999999999999864

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.51  E-value=0.083  Score=37.49  Aligned_cols=53  Identities=21%  Similarity=0.433  Sum_probs=40.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|+... +..+ ..++++++.   +-|.+.|.|++|+|+..|..
T Consensus         9 F~~fD~d~~G~I~~~el~~~-l~~lg~~~~~~e~~---~l~~~~D~d~~g~I~~~eF~   62 (65)
T d1fw4a_           9 FRVFDKDGNGYISAAELRHV-MTNLGEKLTDEEVD---EMIREADIDGDGQVNYEEFV   62 (65)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-HHHTTCCCCHHHHH---HHHHTTCTTCSSSEEHHHHH
T ss_pred             HHHHcCCCCCcCCHHHHHHH-HHHhCCCCCHHHHH---HHHHHcCCCCCCcEeHHHHH
Confidence            44568899999999987665 4444 567777777   44667799999999998865

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=92.21  E-value=0.068  Score=40.45  Aligned_cols=45  Identities=24%  Similarity=0.482  Sum_probs=36.7

Q ss_pred             CCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          395 NGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       395 ~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.++..+..+.     .+++++++..+.+.|+.+|.|++|+|+..||..
T Consensus         3 ~g~id~~~~~ma-----~~l~~~~i~~l~~~F~~~D~d~~G~I~~~el~~   47 (87)
T d1s6ja_           3 SGHIDDDDKHMA-----ERLSEEEIGGLKELFKMIDTDNSGTITFDELKD   47 (87)
T ss_dssp             SSSSSSHHHHSS-----SSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHH
T ss_pred             CCccCchHHHHH-----hhCCHHHHHHHHHHHHHHcCCCCCcCcHHHHHH
Confidence            466666654433     678889999999999999999999999999864

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.069  Score=41.24  Aligned_cols=59  Identities=24%  Similarity=0.354  Sum_probs=39.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCC------------CCHHHH-HHHHHHhhhccCCCCCccChhhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGK------------ISEKDV-MQICHKFDRLDTGNCGKITLADLMEA  445 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~k------------i~~edv-~~i~~~F~~ld~~~~G~l~~~dl~~~  445 (447)
                      +...|.|++|.++..|+....-....+            ...+.+ ..+.+-|++.|.|++|.||.+|.+..
T Consensus        22 F~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~~~   93 (99)
T d1snla_          22 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLAS   93 (99)
T ss_dssp             HHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHH
T ss_pred             HHHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHH
Confidence            556799999999999865542221111            111222 34556799999999999999998753

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.16  E-value=0.085  Score=39.23  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=40.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|+....-..-..++++++.+   -|.+.|.|++|.|+.+|..
T Consensus        20 F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e~~~---~~~~~D~d~~g~I~~~eF~   73 (81)
T d1avsa_          20 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDA---IIEEVDEDGSGTIDFEEFL   73 (81)
T ss_dssp             HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHH---HHHHHCTTCCSSEEHHHHH
T ss_pred             HHHHcCCCCCeEchhHHHHHHHHcCCCCCHHHHHH---HHHHhCCCCCCeEeHHHHH
Confidence            44568899999999887554333446777777764   4677799999999999865

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.11  E-value=0.092  Score=43.38  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=41.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-......+++++..   -|+..|.|++|+|+..|.++
T Consensus       102 F~~~D~d~~G~Is~~e~~~~l~~~~~~~~~~~~~~---l~~~~D~d~dG~Is~~EF~~  156 (162)
T d1topa_         102 FRIFDKNADGFIDIEELGEILRATGEHVTEEDIED---LMKDSDKNNDGRIDFDEFLK  156 (162)
T ss_dssp             HHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHH---HHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHCCCCCCCCcHHHHHHHHHhhCCCCCHHHHHH---HHHHhCCCCCCcEEHHHHHH
Confidence            45678899999999987654333335666666664   47888999999999988763

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.1  Score=40.04  Aligned_cols=52  Identities=29%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|.... + ..-+++++++.   +-|+..|.|++|+|+.+|..
T Consensus        16 F~~~D~d~~G~is~~e~~~~-l-~~~~l~~~~l~---~i~~~~D~d~dG~l~~~EF~   67 (95)
T d1c07a_          16 FLKTDKDMDGFVSGLEVREI-F-LKTGLPSTLLA---HIWSLCDTKDCGKLSKDQFA   67 (95)
T ss_dssp             HHHHCTTCSSEECHHHHHHH-H-HTTTCCHHHHH---HHHHHHCTTCSSSEETTTHH
T ss_pred             HHHHCCCCCCCCcHHHHHHH-H-HhcCCCHHHHH---HHHHHhCCCCCCeEcHHHHH
Confidence            45578999999998875443 3 34457888777   44777899999999999864

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=91.13  E-value=0.059  Score=40.43  Aligned_cols=50  Identities=16%  Similarity=0.369  Sum_probs=31.3

Q ss_pred             hhhccC-CCCcChHHHHHHHHHHh--CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          389 AADIDN-NGFVSKSEYVIYKLKEM--GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       389 ~~did~-~g~vs~~ef~~~~L~~~--~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ..|.++ +|.++..|.  ....+.  ...+++++.++   |++.|.|++|+|+.+|.+
T Consensus        23 ~fD~d~~~G~I~~~el--~~~l~~lg~~~t~~el~~~---i~~~D~d~~G~I~f~eFl   75 (82)
T d1wrka1          23 IFVLGAEDGSISTKEL--GKVMRMLGQNPTPEELQEM---IDEVDEDGSGTVDFDEFL   75 (82)
T ss_dssp             HHTTTCTTSSBCHHHH--HHHHHHTTCCCCHHHHHHH---HHTTCTTCCSSBCHHHHH
T ss_pred             HHcCcCCCCeEeHHHH--HHHHHHcCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            345563 577777763  345544  44666666644   556677888888877764

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=90.85  E-value=0.19  Score=39.49  Aligned_cols=45  Identities=18%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             cCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhh
Q 013211          393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL  442 (447)
Q Consensus       393 d~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl  442 (447)
                      +.+|.++-.||+...  ....-++++   +.+.|+..|.|++|.|+..||
T Consensus        19 d~dG~idf~EF~~~~--~~~~~~~~~---~~~~F~~~D~d~~G~I~~~El   63 (109)
T d1pvaa_          19 KAEGSFNHKKFFALV--GLKAMSAND---VKKVFKAIDADASGFIEEEEL   63 (109)
T ss_dssp             CSTTCCCHHHHHHHH--TCTTSCHHH---HHHHHHHHCTTCSSSBCHHHH
T ss_pred             CCCCCCcHHHHHHHH--HHccCCHHH---HHHHhhCccCCCcCeEcHHHH
Confidence            455555555554321  111222222   334566666666666666555

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=90.83  E-value=0.054  Score=42.98  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=9.9

Q ss_pred             HHhhhccCCCCCccChhhhh
Q 013211          424 HKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       424 ~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +.|.+.|.|++|+||..|..
T Consensus       111 ~~~~~~D~d~dG~is~~EF~  130 (134)
T d1jfja_         111 EQVMKADANGDGYITLEEFL  130 (134)
T ss_dssp             HHHHHHHCSSSSEEEHHHHH
T ss_pred             HHHHHHCCCCCCCCCHHHHH
Confidence            34444455555555555443

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.24  Score=39.42  Aligned_cols=54  Identities=19%  Similarity=0.326  Sum_probs=41.3

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..++... +... ..++++++.   +-|+..|.|++|+|+..|...
T Consensus        85 f~~~d~~~~G~i~~~el~~~-l~~~g~~l~~~e~~---~l~~~~D~d~dG~i~~~EF~~  139 (141)
T d2obha1          85 FKLFDDDETGKISFKNLKRV-AKELGENLTDEELQ---EMIDEADRDGDGEVSEQEFLR  139 (141)
T ss_dssp             HHHHCTTCSSSBCHHHHHHH-HHHTTCCCCHHHHH---HHHHHHCTTSSSSBCHHHHHH
T ss_pred             HHHhcccCCCCccHHHHHHH-HHHhCCCCCHHHHH---HHHHHHCCCCCCCEeHHHHHH
Confidence            45678889999998887554 4445 578888776   557777999999999988753

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.2  Score=42.33  Aligned_cols=47  Identities=15%  Similarity=0.192  Sum_probs=38.3

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++-.||....         +.+..+.+.|...|.|++|+|+.+||..
T Consensus        48 ~~D~~~~G~i~~~EF~~l~---------~~~~~~~~~F~~fD~d~sG~I~~~El~~   94 (165)
T d1k94a_          48 MLDRDHTGKMGFNAFKELW---------AALNAWKENFMTVDQDGSGTVEHHELRQ   94 (165)
T ss_dssp             HHCTTCSSCBCHHHHHHHH---------HHHHHHHHHHHHHCTTCCSBCCHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHh---------hccchhHHHHHHhCCCCCCeEcHHHHHH
Confidence            3678899999999987652         3356778889999999999999999864

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=89.98  E-value=0.071  Score=38.37  Aligned_cols=53  Identities=19%  Similarity=0.482  Sum_probs=39.6

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhC--CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMG--KISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~--ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|+... +...|  .++++++..+   |++.|.|++|+|+..|..
T Consensus         8 F~~~D~d~~G~I~~~el~~~-l~~~g~~~~s~~e~~~~---~~~~D~d~dG~i~~~EF~   62 (68)
T d1c7va_           8 FKVFDANGDGVIDFDEFKFI-MQKVGEEPLTDAEVEEA---MKEADEDGNGVIDIPEFM   62 (68)
T ss_dssp             HHHHSCSGGGEECHHHHHHH-SSTTTTCCCCHHHHHHH---HHHHCSSGGGSEEHHHHH
T ss_pred             HHHHcCCCcCeEcHHHHHHH-HHHhCCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            34568889999998886543 44443  3688888855   667899999999998875

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=89.59  E-value=0.36  Score=35.81  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHhhhccCCC-CCccChhhhhh
Q 013211          412 GKISEKDVMQICHKFDRLDTGN-CGKITLADLME  444 (447)
Q Consensus       412 ~ki~~edv~~i~~~F~~ld~~~-~G~l~~~dl~~  444 (447)
                      .+++++++..+.+.|+..|.|+ +|+|+..||..
T Consensus         7 ~~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~   40 (82)
T d1wrka1           7 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGK   40 (82)
T ss_dssp             HHCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHH
Confidence            3689999999999999999995 79999999864

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.51  E-value=0.097  Score=39.90  Aligned_cols=31  Identities=16%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          413 KISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       413 ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ++++++...+.+.|+.+|.|++|+|+.+++.
T Consensus         2 ~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~   32 (92)
T d1fi6a_           2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAK   32 (92)
T ss_dssp             CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcccchhHHHHH
Confidence            3566666666666777776677766666654

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.50  E-value=0.12  Score=41.90  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=34.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+....-..-.+++++++..+.+    .|.|++|+|+..|.++
T Consensus        87 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~----~~~d~dG~I~y~eF~~  140 (145)
T d2mysc_          87 LRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK----GQEDSNGCINYEAFVK  140 (145)
T ss_pred             HHHhhcCCCCEEcHHHHHHHHHHhCCCCCHHHHHHHHh----hcCCCCCeEEHHHHHH
Confidence            45567777788777776554333334677777776653    2557788888777653

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=89.48  E-value=0.19  Score=39.57  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=39.3

Q ss_pred             HhhhhccCCCCcChHHHHHH--HHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIY--KLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~--~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+...  .+... .+++++++.++   |++.|.|++|+|+..|...
T Consensus        47 F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~---~~~~D~d~dG~I~~~EF~~  104 (109)
T d5pala_          47 FEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKAL---LAAGDSDHDGKIGADEFAK  104 (109)
T ss_dssp             HHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHHH
T ss_pred             HhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHH---HHHhCCCCCCCEeHHHHHH
Confidence            44568899999998886422  22222 36888888755   6667889999999988753

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=89.47  E-value=0.13  Score=42.82  Aligned_cols=53  Identities=28%  Similarity=0.536  Sum_probs=41.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... ++..+ ++.+++.   ..|++.|.|++|+|+..|..+
T Consensus       100 F~~~D~d~dG~Is~~E~~~~-l~~~~-~~~~~~~---~~f~~~D~d~dG~Is~~Ef~~  152 (174)
T d2scpa_         100 FRAVDTNEDNNISRDEYGIF-FGMLG-LDKTMAP---ASFDAIDTNNDGLLSLEEFVI  152 (174)
T ss_dssp             HHHHCTTCSSSEEHHHHHHH-HHHTT-CCGGGHH---HHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHHCCCccccCCHHHHHHH-HHHHh-hhhHHHH---HHHhhcCCCCCCcEeHHHHHH
Confidence            45678999999999987553 45554 5666665   568999999999999999865

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.2  Score=42.59  Aligned_cols=56  Identities=16%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             hhhhccCCCCcChHHHHHHHHHH------hCCCCHHHHHHHHH-HhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKE------MGKISEKDVMQICH-KFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~------~~ki~~edv~~i~~-~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|.... +..      ...++++++.++.+ -|++.|.|++|+||.+|...
T Consensus       102 ~~~D~d~~G~I~~~el~~~-l~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~dG~Is~~EF~~  164 (180)
T d1xo5a_         102 RIFDFDDDGTLNREDLSRL-VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH  164 (180)
T ss_dssp             HHHCTTCSSSBCHHHHHHH-HHHHC------CCCCTTHHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             ccccCCCCCeeeHHHHHHH-HHHHHhccccccccHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3458899999998885443 333      34567777776554 59999999999999998753

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=88.81  E-value=0.16  Score=43.80  Aligned_cols=47  Identities=19%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++-.||....         +.+..+.+.|+..|.|++|.|+..||..
T Consensus        71 ~~D~d~~G~i~~~EF~~l~---------~~~~~~~~~F~~~D~d~sG~i~~~El~~  117 (188)
T d1qxpa2          71 LMDRDGNGKLGLVEFNILW---------NRIRNYLTIFRKFDLDKSGSMSAYEMRM  117 (188)
T ss_dssp             HHCC--CCCCCSSSHHHHH---------HHHHHHHHHHGGGCTTCCSCCBHHHHHH
T ss_pred             HhcCCCCCcccHHHHHHHH---------hhhHHHHHHHHHhCCCCCCEECHHHHHH
Confidence            3566777777777775432         3345666778888888888888877753

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=88.46  E-value=0.25  Score=38.70  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=39.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|+++..|+... +..+    .+++++++..   -|++.|.|++|+|+.+|..
T Consensus        47 F~~~D~d~~G~I~~~El~~~-l~~l~~~~~~~~~~e~~~---~~~~~D~d~dG~i~~~EF~  103 (109)
T d1rwya_          47 FHILDKDKSGFIEEDELGSI-LKGFSSDARDLSAKETKT---LMAAGDKDGDGKIGVEEFS  103 (109)
T ss_dssp             HHHHSTTCSSEECHHHHHTH-HHHHCTTCCCCCHHHHHH---HHHHHCTTCSSSEEHHHHH
T ss_pred             hhcccCCCCCcCcHHHHHHH-HHHhccccccCCHHHHHH---HHHHhCCCCCCeEeHHHHH
Confidence            44568899999999987543 3333    3578888774   4666699999999999875

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.37  E-value=0.37  Score=37.11  Aligned_cols=53  Identities=15%  Similarity=0.222  Sum_probs=39.9

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|...  +.+.-.++++++.+|   |+..|.|++|.|+.+|...
T Consensus        17 F~~~D~d~~G~i~~~e~~~--~l~~s~L~~~~L~~i---~~~~D~d~dG~L~~~EF~~   69 (99)
T d1qjta_          17 YRQVEAGNTGRVLALDAAA--FLKKSGLPDLILGKI---WDLADTDGKGVLSKQEFFV   69 (99)
T ss_dssp             HHHHCCTTSSCCCSHHHHH--HHHTSSSCHHHHHHH---HHHHCCSSSSSCCSHHHHH
T ss_pred             HHHHCCCCCCcccHHHHHH--HHHHcCCcHHHHHHH---HHHHcCCCCCccCHHHHHH
Confidence            5567899999998877433  344556888887755   5666999999999999863

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=88.08  E-value=0.26  Score=38.74  Aligned_cols=47  Identities=17%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .+.+|.++-.||+...  ....-+++   ++.+.|+..|.|++|.|+..||.
T Consensus        18 ~~~~G~idf~eF~~~~--~~~~~~~~---~l~~~F~~~D~d~~G~I~~~El~   64 (109)
T d5pala_          18 FKDPGTFDYKRFFHLV--GLKGKTDA---QVKEVFEILDKDQSGFIEEEELK   64 (109)
T ss_dssp             TCSTTCCCHHHHHHHH--TCTTCCHH---HHHHHHHHHCTTCSSEECHHHHH
T ss_pred             cCCCCcCcHHHHHHHH--HhcCCCHH---HHHHHHhhhcCCCCCeEcHHHHH
Confidence            4667889999997432  22333444   56689999999999999999985

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=88.04  E-value=0.13  Score=40.66  Aligned_cols=58  Identities=21%  Similarity=0.329  Sum_probs=45.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..||.......+.......-..+...|+..|.+++|.|+.+++..
T Consensus        42 ~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~   99 (134)
T d1jfja_          42 FKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTS   99 (134)
T ss_dssp             HHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHH
T ss_pred             HHHhhhcccccccccccccccccccccccccccccccccccccccccCCcccHHHHHH
Confidence            4556788889999988876644445556666777888999999999999999998864

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.12  Score=39.57  Aligned_cols=31  Identities=16%  Similarity=0.144  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          414 ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.++...+.+.|+.+|.|++|.|+.+|+..
T Consensus         4 lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~   34 (95)
T d1c07a_           4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVRE   34 (95)
T ss_dssp             SCSHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHH
Confidence            5778888999999999999999999998864

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.85  E-value=0.39  Score=38.75  Aligned_cols=54  Identities=20%  Similarity=0.404  Sum_probs=42.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +..+ .+++++++..+   |...|.|++|+|+..|.++
T Consensus        87 F~~~D~~~~G~I~~~el~~~-l~~~g~~l~~~ei~~l---~~~~D~d~dG~I~y~eF~~  141 (146)
T d1m45a_          87 FQVFDKESTGKVSVGDLRYM-LTGLGEKLTDAEVDEL---LKGVEVDSNGEIDYKKFIE  141 (146)
T ss_dssp             HHTTCSSSSSEEEHHHHHHH-HHHSTTCCCHHHHHHH---HTTCCCCTTSEEEHHHHHH
T ss_pred             HHhhccccccccchhhhhhh-hcccCCcchHHHHHHH---HHHhCCCCCCcEEHHHHHH
Confidence            56678899999998887665 4444 46888887754   7788999999999999864

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.77  E-value=0.31  Score=39.36  Aligned_cols=53  Identities=17%  Similarity=0.308  Sum_probs=41.2

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|+....-..-..++++++..+.+   +.| |++|+|+.+|..
T Consensus        89 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~---~~d-d~dG~I~~~eF~  141 (146)
T d1lkja_          89 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLR---EVS-DGSGEINIQQFA  141 (146)
T ss_dssp             HHHHCSSSSCEEEHHHHHHHHHHHTCSCCHHHHHHHHH---HHC-CSSSEEEHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHcCCcccHHHHHHHHH---hcc-CCCCeEeHHHHH
Confidence            45578899999999998766556667788888876655   557 899999998865

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.71  E-value=0.21  Score=42.52  Aligned_cols=55  Identities=25%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..||+...-.....-.++.+.   ..|+..|.|++|.|+.+|+..
T Consensus        69 f~~~D~~~~G~I~~~Ef~~~~~~~~~~~~~e~~~---~~F~~~D~d~dG~is~~E~~~  123 (190)
T d1fpwa_          69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLS---WAFELYDLNHDGYITFDEMLT  123 (190)
T ss_dssp             HHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHH---HHHHHHCSSCSSEEEHHHHHH
T ss_pred             HHHhCcCCCCcccHHHHHHHHHHHccCchHHHHH---HHHHHhccCCCCcCcHHHHHH
Confidence            3456788899999999988755544445555554   779999999999999999763

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=87.53  E-value=0.21  Score=39.05  Aligned_cols=54  Identities=19%  Similarity=0.393  Sum_probs=40.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|.++..|+.. .++.+    .+++++++..+   |++.|.|++|+|+..|.+.
T Consensus        46 F~~~D~d~~G~I~~~el~~-~l~~l~~~~~~~~~~~~~~l---~~~~D~d~dG~I~~~EF~~  103 (107)
T d2pvba_          46 FYVIDQDKSGFIEEDELKL-FLQNFSPSARALTDAETKAF---LADGDKDGDGMIGVDEFAA  103 (107)
T ss_dssp             HHHHCTTCSSSBCHHHHHT-GGGGTCTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHHH
T ss_pred             HHhhccCCCCcCcHHHHHH-HHHHhhcccccCCHHHHHHH---HHHhCCCCCCcEeHHHHHH
Confidence            4556899999999888644 34443    35788877754   6788999999999998763

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.29  E-value=0.42  Score=38.49  Aligned_cols=52  Identities=21%  Similarity=0.335  Sum_probs=33.2

Q ss_pred             hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +.+.++.+...++.............  -..+.+.|+..|.+++|.|+..|+..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~aF~~~D~d~~G~I~~~el~~  107 (146)
T d1lkja_          56 DVDGNHQIEFSEFLALMSRQLKSNDS--EQELLEAFKVFDKNGDGLISAAELKH  107 (146)
T ss_dssp             CSSSCCEEEHHHHHHHHHHHTCCCCH--HHHHHHHHHHHCSSSSCEEEHHHHHH
T ss_pred             ccCCcccccHHHHHHHHHHhhccccH--HHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            44555555555555443332322222  24566889999999999999999864

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=87.15  E-value=0.23  Score=39.04  Aligned_cols=53  Identities=25%  Similarity=0.486  Sum_probs=38.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+++|.++..|.. ..+...    ..++++++.++   |++.|.|++|+|+..|..
T Consensus        47 F~~~D~d~~G~I~~~El~-~~l~~l~~~g~~ls~~ev~~~---~~~~D~d~dG~I~~~EF~  103 (109)
T d1pvaa_          47 FKAIDADASGFIEEEELK-FVLKSFAADGRDLTDAETKAF---LKAADKDGDGKIGIDEFE  103 (109)
T ss_dssp             HHHHCTTCSSSBCHHHHH-TGGGGTCTTCCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             hhCccCCCcCeEcHHHHH-HHHHHhhhcCCCCCHHHHHHH---HHHHCCCCcCcEeHHHHH
Confidence            455688999999988853 223332    35788888755   556689999999999875

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=86.66  E-value=0.28  Score=40.13  Aligned_cols=53  Identities=21%  Similarity=0.502  Sum_probs=40.4

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +... .++++++.   +-|+++|.|++|+|+..|...
T Consensus       108 F~~~D~d~dG~Is~~E~~~~-~~~~-~~~~~~~~---~~f~~~D~d~dG~i~~~Ef~~  160 (176)
T d1nyaa_         108 VGMCDKNADGQINADEFAAW-LTAL-GMSKAEAA---EAFNQVDTNGNGELSLDELLT  160 (176)
T ss_dssp             HHHTCSSCCSEEEHHHHHHH-HHHT-TCCHHHHH---HHHHHHCTTCSSEEEHHHHHH
T ss_pred             HHHHccCCChhhhHHHHHHH-HHhc-CCcHHHHH---HHHHHHCCCCCCcEeHHHHHH
Confidence            34468899999999997643 3344 46777766   558888999999999999874

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.61  E-value=0.57  Score=39.89  Aligned_cols=57  Identities=23%  Similarity=0.244  Sum_probs=38.2

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHH----------H-HHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDV----------M-QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv----------~-~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+....-.........+.          . ...+-|++.|.|++|+||.+|..+
T Consensus       106 ~~~D~d~~G~is~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~  173 (201)
T d1omra_         106 SLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIE  173 (201)
T ss_dssp             HHHCTTCSSSBCHHHHHHHHHHHHTTSCHHHHTTSCGGGSSHHHHHHHHHHHTTCCTTCCBCHHHHHH
T ss_pred             HHHccCCCCccCHHHHHHHHHHHHhhcChhhhhhhhhhhccHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence            44588999999999876543333333333221          1 223459999999999999999764

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.53  E-value=0.22  Score=39.02  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=13.1

Q ss_pred             HHHHHhhhccCCCCCccChhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .+.+.|+..|.|++|+|+..|+.
T Consensus        42 ~l~~~F~~~D~d~~G~I~~~El~   64 (108)
T d1rroa_          42 QVKDIFRFIDNDQSGYLDGDELK   64 (108)
T ss_dssp             HHHHHHHHHCTTCSSEECTHHHH
T ss_pred             HHHHHHhhhcCCCCCeEcHHHHH
Confidence            33455666666666666666553

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.51  E-value=0.52  Score=39.56  Aligned_cols=56  Identities=25%  Similarity=0.414  Sum_probs=41.3

Q ss_pred             hhhhccCCCCcChHHHHHH---HHHHhC-CCCHHHHHHHHH-HhhhccCCCCCccChhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIY---KLKEMG-KISEKDVMQICH-KFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~---~L~~~~-ki~~edv~~i~~-~F~~ld~~~~G~l~~~dl~  443 (447)
                      ...|.+.+|.++..|+...   .+...+ ..+++.+.++.+ -|.+.|.|++|+|+..|..
T Consensus        98 ~~~D~d~~G~Is~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~  158 (183)
T d2zfda1          98 QLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWR  158 (183)
T ss_dssp             HHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHH
T ss_pred             cccccCCCCCccHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            4568899999998875432   233333 567777777655 4999999999999999875

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=86.38  E-value=0.23  Score=38.86  Aligned_cols=48  Identities=15%  Similarity=0.178  Sum_probs=34.3

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+.+|.++-.||.... . +   +.+...++++.|+..|.|++|+|+..|+..
T Consensus        17 ~~~~gsi~~~eF~~~~-~-l---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   64 (107)
T d2pvba_          17 CSAADSFKHKEFFAKV-G-L---ASKSLDDVKKAFYVIDQDKSGFIEEDELKL   64 (107)
T ss_dssp             TCSTTCCCHHHHHHHH-T-G---GGSCHHHHHHHHHHHCTTCSSSBCHHHHHT
T ss_pred             ccCCCCcCHHHHHHHH-h-c---ccCCHHHHHHHHHhhccCCCCcCcHHHHHH
Confidence            3556778888876542 1 2   222334567899999999999999999864

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=86.24  E-value=0.43  Score=36.28  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=32.8

Q ss_pred             hccCCCCcChHHHHHHHHHH-----hCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKE-----MGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~-----~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      |.+ +|.++..|+....-..     ....+++.+.   +-|+++|.|++|+|+..|..
T Consensus        19 d~d-dG~is~~El~~~l~~~~~~~~~~~~~~~~v~---~~~~~~D~n~DG~I~F~EF~   72 (92)
T d1a4pa_          19 AGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVD---KIMKDLDQCRDGKVGFQSFF   72 (92)
T ss_dssp             HGG-GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHH---HHHHHHCTTSSSCBCHHHHH
T ss_pred             cCC-CCEEcHHHHHHHHHHhccccccccCCHHHHH---HHHHHHhCCCCCCCcHHHHH
Confidence            434 6999999876553221     1123444444   55888999999999999853

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.93  E-value=0.15  Score=35.56  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=21.6

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++++.|+..|.+++|.|+..||..
T Consensus         2 el~~aF~~fD~~~~G~I~~~el~~   25 (61)
T d2fcea1           2 DFVKAFQVFDKESTGKVSVGDLRY   25 (61)
T ss_dssp             HHHHHHHHHCTTCCSCEEHHHHHH
T ss_pred             hHHHHHHHHCCCCCCeEeHHHHHH
Confidence            577999999999999999999864

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=85.90  E-value=0.17  Score=42.19  Aligned_cols=53  Identities=23%  Similarity=0.389  Sum_probs=40.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... +... .++++++.   +-|+++|.|++|+|+..|..+
T Consensus       111 F~~~D~d~~G~Is~~E~~~~-l~~~-~l~~~~~~---~~f~~~D~d~dG~i~~~EF~~  163 (185)
T d2sasa_         111 FKGMDVSGDGIVDLEEFQNY-CKNF-QLQCADVP---AVYNVITDGGKVTFDLNRYKE  163 (185)
T ss_dssp             HHHHCTTSSSCCCHHHHHHH-TTSS-CCCCSSHH---HHHHHHHTTTTSCCSHHHHHH
T ss_pred             HHHHccCCCccCCHHHHHHH-HHHc-CCCHHHHH---HHHHHcCCCCCCCCcHHHHHH
Confidence            45578899999999997554 4444 46767665   668889999999999998864

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=85.90  E-value=0.38  Score=38.52  Aligned_cols=55  Identities=22%  Similarity=0.337  Sum_probs=40.1

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++-.+|.......+...  .....+.+.|+..|.|++|.|+..|+..
T Consensus        52 ~~~d~~~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~~F~~~D~d~~G~i~~~e~~~  106 (146)
T d1exra_          52 NEVDADGNGTIDFPEFLSLMARKMKEQ--DSEEELIEAFKVFDRDGNGLISAAELRH  106 (146)
T ss_dssp             HHHCTTCSSSEEHHHHHHHHHHHHHHH--HHHHHHHHHHHHHSTTCSSCBCHHHHHH
T ss_pred             HhcCCCCCCcccHHHHHHHHHHHhhcc--ChHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            445778889999888876643333221  2344677889999999999999999864

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.87  E-value=0.22  Score=42.22  Aligned_cols=52  Identities=19%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ..|.+.+|.++..||+.........-.++   .+...|+..|.|++|.|+.+|+.
T Consensus        68 ~~d~~~dg~I~~~EF~~~l~~~~~~~~~e---~l~~~F~~~D~d~dG~i~~~El~  119 (187)
T d1g8ia_          68 VFDENKDGRIEFSEFIQALSVTSRGTLDE---KLRWAFKLYDLDNDGYITRNEML  119 (187)
T ss_dssp             HHCTTCSSEEEHHHHHHHHHHHHHCCHHH---HHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             HhCcCCCCCCcHHHHHHHHHHhccCchhh---hHHHHHHHHhcCCCCeEcHHHHH
Confidence            34678889999999988765554433333   34577999999999999999975

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.86  E-value=0.79  Score=36.70  Aligned_cols=53  Identities=19%  Similarity=0.343  Sum_probs=40.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+... |... .+++++++.++.+.+   |.+ +|+|+..|.++
T Consensus        82 F~~~D~d~~G~I~~~el~~~-l~~~g~~lt~~e~~~l~~~~---d~~-dG~I~y~eF~~  135 (140)
T d1ggwa_          82 FQVFDKDATGMIGVGELRYV-LTSLGEKLSNEEMDELLKGV---PVK-DGMVNYHDFVQ  135 (140)
T ss_dssp             HHTTCSSCSSCCCHHHHHHH-HHHHHSCSCHHHHHHHHHHT---TCS-SCCSTTTHHHH
T ss_pred             HHHHhccCCCcchHHHHHHH-HHHcCCCCCHHHHHHHHHhh---CCC-CCEEeHHHHHH
Confidence            45568899999999887654 4444 469999999876655   656 89999988753

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=85.85  E-value=0.18  Score=41.26  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=12.8

Q ss_pred             HHHHhhhccCCCCCccChhhhh
Q 013211          422 ICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       422 i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +.+.|+..|.+++|.|+..||.
T Consensus        84 l~~aF~~~D~~~~G~I~~~el~  105 (152)
T d1wdcc_          84 YMEAFKTFDREGQGFISGAELR  105 (152)
T ss_dssp             HHHHHHTTCSSSSSEEEHHHHH
T ss_pred             hhhhhhccccccCccchHHHHH
Confidence            3355666666666666666553

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=85.83  E-value=0.36  Score=40.95  Aligned_cols=47  Identities=15%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             hhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       389 ~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ..|.+.+|.++-.||....         ..+..+.+.|...|.|++|+|+..||.+
T Consensus        69 ~~D~d~~G~I~~~EF~~~~---------~~~~~~~~~F~~~D~d~sG~I~~~El~~  115 (186)
T d1df0a1          69 MLDEDGSGKLGLKEFYILW---------TKIQKYQKIYREIDVDRSGTMNSYEMRK  115 (186)
T ss_dssp             HHCCSSSSEECHHHHHHHH---------HHHHHHHHHHHHHCTTCCSCEEGGGHHH
T ss_pred             HHcCCCCCcccHHHHHHHH---------HhHHHHHHHHHhhCCCCCCcccHHHHHH
Confidence            3566777777777765442         2234566677777777777777777654

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.22  Score=38.16  Aligned_cols=30  Identities=17%  Similarity=0.164  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          414 ISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.++..++.+-|+++| +++|+|+..++..
T Consensus         4 ls~ee~~~y~~~F~~~D-~~~G~i~~~el~~   33 (95)
T d2jxca1           4 VKPEDKAKYDAIFDSLS-PVNGFLSGDKVKP   33 (95)
T ss_dssp             SCHHHHHHHHHHHHHTC-CBTTEEEHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCCceeHHHHHH
Confidence            56777777777788888 6778887777653

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.37  E-value=0.14  Score=42.01  Aligned_cols=55  Identities=24%  Similarity=0.404  Sum_probs=39.8

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..|+....-.....++++++..+   |+..|.|++|+|+..|..+
T Consensus        97 F~~~D~d~~G~I~~~e~~~~~~~~~~~ls~~e~~~i---~~~~D~d~dG~I~~~eF~~  151 (156)
T d1dtla_          97 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL---MKDGDKNNDGRIDYDEFLE  151 (156)
T ss_dssp             HHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHH---HHHHCTTSSSEEEHHHHHH
T ss_pred             HHHhCcCCCCcCcHHHHHHHHhhcCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            455688899999998875543233356778887755   6677889999999998753

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.22  E-value=0.62  Score=39.28  Aligned_cols=54  Identities=20%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++-.||+.........-.++.+.   ..|+..|.|++|.|+..|+..
T Consensus        65 ~~~D~d~dG~I~f~Ef~~~l~~~~~~~~~~~~~---~~F~~~D~d~~g~i~~~E~~~  118 (189)
T d1jbaa_          65 RAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLK---WTFKIYDKDRNGCIDRQELLD  118 (189)
T ss_dssp             HHHCCSSSSEECHHHHHHHHHHHSSCCCTHHHH---HHHHHHCSSCSSCBCHHHHHH
T ss_pred             HHhccCCCCeEeehhHHHHHHhhcccchHHHHH---HHHhhhccCCCCcccHhHHHH
Confidence            346888999999999987755555444445444   568889999999999998753

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.85  E-value=0.6  Score=37.60  Aligned_cols=55  Identities=15%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..++....-....+++++++..+.   +..|.|++|+|+-.|+..
T Consensus        83 F~~fD~~~~g~I~~~el~~~l~~~g~~ls~~e~~~~~---~~~d~d~dg~I~y~eF~~  137 (145)
T d2mysb_          83 FKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMW---AAFPPDVAGNVDYKNICY  137 (145)
T ss_pred             HHhhhhcccchhhHHHHHHHHHHcCCCCCHHHHHHHH---HHhCCCCCCeEeHHHHHH
Confidence            3445677888888887666533334577888888664   455778999999888753

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.71  E-value=0.36  Score=41.22  Aligned_cols=54  Identities=20%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++-.||+...........++.+.   ..|+..|.|++|.|+.+|+..
T Consensus        70 ~~~D~~~~G~I~f~EF~~~~~~~~~~~~~~~l~---~~F~~~D~d~~G~is~~E~~~  123 (201)
T d1omra_          70 RSFDANSDGTLDFKEYVIALHMTSAGKTNQKLE---WAFSLYDVDGNGTISKNEVLE  123 (201)
T ss_dssp             HTTTSCSSSEEEHHHHHHHHHHHHSSCGGGSHH---HHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHhccCCCCeEeehhHHHHHHhhcccchHHHHH---HHHHHHccCCCCccCHHHHHH
Confidence            345778899999999988766665555555444   679999999999999999753

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=83.55  E-value=0.69  Score=38.91  Aligned_cols=14  Identities=21%  Similarity=0.423  Sum_probs=6.7

Q ss_pred             HHhhhccCCCCCcc
Q 013211          424 HKFDRLDTGNCGKI  437 (447)
Q Consensus       424 ~~F~~ld~~~~G~l  437 (447)
                      +.|+..|.+++|.|
T Consensus       154 ~~F~~~D~~~~G~i  167 (182)
T d1y1xa_         154 NVFAFYDRERTGQV  167 (182)
T ss_dssp             HHHHHHCTTCCSEE
T ss_pred             HHHHHhCCCCCCcE
Confidence            44444455555543

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.54  E-value=0.37  Score=36.41  Aligned_cols=52  Identities=23%  Similarity=0.321  Sum_probs=38.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...|.+.+|.++..|... .+.+. .++++++..|   ++..|.|++|+|+.+|..
T Consensus        15 F~~~D~d~~G~i~~~e~~~-~l~~~-~l~~~~l~~i---~~~~D~d~dG~l~~~EF~   66 (92)
T d1fi6a_          15 FKTIQPDLNGFIPGSAAKE-FFTKS-KLPILELSHI---WELSDFDKDGALTLDEFC   66 (92)
T ss_dssp             HTTTCCSTTCEEEHHHHHH-HHHHH-SSCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             HHHhCCCcccchhHHHHHH-HHHHc-cCCHHHHHHH---HHHhCCCCCCeecHHHHH
Confidence            3456888999988876544 34444 4788777755   556799999999999864

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.26  E-value=0.28  Score=41.77  Aligned_cols=57  Identities=21%  Similarity=0.350  Sum_probs=36.9

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhC---CC-----CHHHH-HHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMG---KI-----SEKDV-MQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~---ki-----~~edv-~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+++|.++..|+....-....   +.     .+... ..+.+-|++.|.|++|+|+.+|..+
T Consensus       106 ~~~D~d~dG~is~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~  171 (190)
T d1fpwa_         106 ELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFRE  171 (190)
T ss_dssp             HHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHH
T ss_pred             HHhccCCCCcCcHHHHHHHHHHHHHhcccccCCCchhhhHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3458899999999886544222211   10     11111 2234569999999999999999864

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.25  E-value=0.27  Score=34.65  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++++.|+..|.|++|+|+..|+..
T Consensus         4 el~~aF~~fD~d~~G~I~~~el~~   27 (65)
T d1fw4a_           4 EIREAFRVFDKDGNGYISAAELRH   27 (65)
T ss_dssp             HHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCHHHHHH
Confidence            356899999999999999999864

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.96  E-value=0.47  Score=28.84  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=20.3

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.+-|+-.|.|.+|.|+..++.+
T Consensus         5 ELae~FRifDkNaDGyiD~eEl~~   28 (34)
T d1ctda_           5 ELANAFRIFDKNADGYIDIEELGE   28 (34)
T ss_dssp             HHHHHHHTTCCSSSSCBCHHHHHH
T ss_pred             HHHHHHHHHccCCcccccHHHHHH
Confidence            344789999999999999999864

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.90  E-value=0.29  Score=38.26  Aligned_cols=54  Identities=24%  Similarity=0.469  Sum_probs=39.0

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHh----CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEM----GKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+++|+++..|+... +...    .+++++++..+   |++.|.|++|+|+.+|...
T Consensus        47 F~~~D~d~~G~I~~~El~~~-l~~l~~~~~~l~~~~~~~~---~~~~D~d~dG~I~~~EF~~  104 (108)
T d1rroa_          47 FRFIDNDQSGYLDGDELKYF-LQKFQSDARELTESETKSL---MDAADNDGDGKIGADEFQE  104 (108)
T ss_dssp             HHHHCTTCSSEECTHHHHTG-GGGTCTTSCCCCHHHHHHH---HHHHCCSSSSSEEHHHHHH
T ss_pred             HhhhcCCCCCeEcHHHHHHH-HHHHHhccCCCCHHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            34568899999998886433 2222    35678887755   5666999999999998754

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.84  E-value=0.7  Score=37.18  Aligned_cols=50  Identities=18%  Similarity=0.167  Sum_probs=33.4

Q ss_pred             cCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       393 d~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +.+|.++-.+|+............  ...+.+.|+..|.+++|.|+..|+..
T Consensus        52 ~~~g~i~~~eF~~~~~~~~~~~~~--~~~l~~aF~~fD~~~~g~I~~~el~~  101 (145)
T d2mysb_          52 EASGPINFTVFLTMFGEKLKGADP--EDVIMGAFKVLDPDGKGSIKKSFLEE  101 (145)
T ss_pred             hccCceeechhhhhhhhcccccch--HHHHHHHHHhhhhcccchhhHHHHHH
Confidence            456667777776654443333322  23456789999999999999999764

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.83  E-value=0.75  Score=38.50  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=39.9

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++-.||+...-....+.+.++  .+...|+..|.|++|.|+.+|+..
T Consensus        61 ~~~d~~~dg~I~f~EFl~~l~~~~~~~~~~~--~~~~~F~~~D~d~~G~Is~~e~~~  115 (183)
T d2zfda1          61 DLFDTKHNGILGFEEFARALSVFHPNAPIDD--KIHFSFQLYDLKQQGFIERQEVKQ  115 (183)
T ss_dssp             HHHCSSCSSSBCHHHHHHHHHHTSTTSCHHH--HHHHHHHHHCTTSSSSEEHHHHHH
T ss_pred             HHHccCCCCcCcHHHHHHHHHhhhccCcHHH--HHHHhhcccccCCCCCccHHHHHH
Confidence            4457788999999999776433333444443  344669999999999999998864

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=0.93  Score=38.17  Aligned_cols=53  Identities=11%  Similarity=0.051  Sum_probs=39.2

Q ss_pred             hhcc-CCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          390 ADID-NNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       390 ~did-~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .|.+ .+|.++-.||+...-..+.+.+.++  .+...|+..|.|++|.|+.+|+..
T Consensus        66 fd~~~~~g~I~f~EFv~~l~~~~~~~~~~~--kl~~~F~~~D~d~~G~I~~~el~~  119 (180)
T d1xo5a_          66 FSTSPAKDSLSFEDFLDLLSVFSDTATPDI--KSHYAFRIFDFDDDGTLNREDLSR  119 (180)
T ss_dssp             HCCSTTCCEECHHHHHHHHHHHSTTSCHHH--HHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHHHHHHhhcCCHHH--HHHHhhccccCCCCCeeeHHHHHH
Confidence            3445 5789999999877545555555443  344679999999999999999864

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=82.43  E-value=0.55  Score=36.03  Aligned_cols=50  Identities=10%  Similarity=0.139  Sum_probs=33.6

Q ss_pred             hccC-CCCcChHHHHHHHHHHhC--CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDN-NGFVSKSEYVIYKLKEMG--KISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~-~g~vs~~ef~~~~L~~~~--ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +-++ .|.++..|+....-.+.+  ..+++++.   +-|+++|.|++|+|+..|.+
T Consensus        25 d~dg~~g~is~~El~~~l~~~~~~~~~~~~~v~---~l~~~~D~d~DG~IdF~EF~   77 (98)
T d1yuta1          25 RQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLD---EKMKSLDVNQDSELKFNEYW   77 (98)
T ss_dssp             TTSSSSSCBCHHHHHHHHHHHCTTTTCCSSCHH---HHHHHHCTTCCSCBCHHHHH
T ss_pred             ccCCCCCEEcHHHHHHHHHHhccccCCCHHHHH---HHHHHhcCCCCCcCCHHHHH
Confidence            4454 488998886544223322  23444454   66888899999999999875

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.98  E-value=0.23  Score=39.61  Aligned_cols=54  Identities=24%  Similarity=0.361  Sum_probs=35.8

Q ss_pred             HHhhhhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          386 EFLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       386 ~l~~~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      .+...|.+++|.++..|+... |...| +++++++..+.   +. |.|++|+|+..|+++
T Consensus        82 aF~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~e~~~l~---~~-~~d~dg~I~~~eF~~  136 (139)
T d1w7jb1          82 GFRVFDKEGNGKVMGAELRHV-LTTLGEKMTEEEVETVL---AG-HEDSNGCINYEAFLK  136 (139)
T ss_dssp             HHHTTCTTSSSEEEHHHHHHH-HHHSSSCCCHHHHHHHH---TT-CCCTTSEEEHHHHHH
T ss_pred             hhhhccCCCCCeEeHHHHHHH-HHHhCCCCCHHHHHHHH---hh-CCCCCCeEeHHHHHH
Confidence            355667778888877776544 45554 67777776554   33 667888888887764

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

Probab=81.95  E-value=0.99  Score=34.15  Aligned_cols=50  Identities=12%  Similarity=0.105  Sum_probs=33.5

Q ss_pred             hccCC-CCcChHHHHHHHHH-----HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDNN-GFVSKSEYVIYKLK-----EMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~~-g~vs~~ef~~~~L~-----~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +-+.+ |.++..|+....-.     ..++.+++++.   +-|++.|.|++|+|+..|..
T Consensus        20 ~~dg~~~~L~~~Elk~~l~~~~~~~~~~~~~~~~~~---~i~~~~D~n~DG~I~F~EF~   75 (93)
T d3c1va1          20 GKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQ---KLMSNLDSNRDNEVDFQEYC   75 (93)
T ss_dssp             TSSSSTTEECHHHHHHHHHHHCHHHHTTCCSHHHHH---HHHHHHCTTCSSSEEHHHHH
T ss_pred             cCCCCCCeeCHHHHHHHHHHhchhccccCCCHHHHH---HHHHHHcCCCCCCCCHHHHH
Confidence            34444 35787775443222     23567777777   55677899999999998864

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=81.94  E-value=0.27  Score=35.10  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.6

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.+.|+..|.+++|+|+..||..
T Consensus         3 el~~~F~~~D~d~~G~I~~~el~~   26 (68)
T d1c7va_           3 EILRAFKVFDANGDGVIDFDEFKF   26 (68)
T ss_dssp             HHHHHHHHHSCSGGGEECHHHHHH
T ss_pred             HHHHHHHHHcCCCcCeEcHHHHHH
Confidence            467899999999999999999874

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=81.87  E-value=0.94  Score=34.08  Aligned_cols=49  Identities=16%  Similarity=0.170  Sum_probs=33.7

Q ss_pred             hccC-CCCcChHHHHHHHHHHh------CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          391 DIDN-NGFVSKSEYVIYKLKEM------GKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       391 did~-~g~vs~~ef~~~~L~~~------~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      |-++ .|.++..|+.. .|..+      ...+++.+.   +-|+++|.|++|+|+..|..
T Consensus        20 d~dg~~G~is~~El~~-~L~~~~~~~~~~~~~~~~~~---~~~~~~D~d~dG~Idf~EF~   75 (93)
T d1zfsa1          20 GKEGDKYKLSKKELKD-LLQTELSSFLDVQKDADAVD---KIMKELDENGDGEVDFQEFV   75 (93)
T ss_dssp             GGSSCCSSEEHHHHHH-HHHHHSTTTSCCSSCHHHHH---HHHHHHTTTCCSEECSHHHH
T ss_pred             ccCCCCCEecHHHHHH-HHHHhcccccccCCCHHHHH---HHHHHHcCCCCCCCcHHHHH
Confidence            4454 47888888643 34443      244555555   56889999999999999864

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.84  E-value=1  Score=36.96  Aligned_cols=56  Identities=18%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             hhhhccCCCCcChHHHHHHHHH-HhCCCCHHHHHHH-HHHhhhccCCCCCccChhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLK-EMGKISEKDVMQI-CHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~-~~~ki~~edv~~i-~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      ...|.+.+|.++..|.....-. ....++++....+ .+-|++.|.|++|+|+.+|..
T Consensus        92 ~~~d~d~~g~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dG~Is~~EF~  149 (165)
T d1auib_          92 RIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC  149 (165)
T ss_dssp             HHHCTTCSSEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCTTSSSSEEHHHHH
T ss_pred             HHhcccccccccHHHHHHHHHHhccccCchHHHHHHHHHHHHHcCCCCCCcEeHHHHH
Confidence            3457788999988875443222 2345565555444 456999999999999999965

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.62  E-value=0.94  Score=36.17  Aligned_cols=54  Identities=11%  Similarity=0.123  Sum_probs=38.0

Q ss_pred             hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +..++|.++-.+|.......+..-.......+.+.|+.+|.+++|.|+.+|+..
T Consensus        52 d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~  105 (145)
T d2mysc_          52 EEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRH  105 (145)
T ss_pred             cccccCccchhHHHHHHhhhhhccccchHHHHHHHHHHhhcCCCCEEcHHHHHH
Confidence            344566677777766544444433344455677999999999999999999864

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.60  E-value=0.71  Score=38.39  Aligned_cols=54  Identities=28%  Similarity=0.430  Sum_probs=36.1

Q ss_pred             hhhhccCCCCcChHHHHHHHHHHhC------------CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIYKLKEMG------------KISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~~L~~~~------------ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+....-....            ...++.   +.+-|++.|.|++|+||.+|...
T Consensus       102 ~~~D~d~dg~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~if~~~D~d~dG~Is~~EF~~  167 (181)
T d1bjfa_         102 SMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKR---TEKIFRQMDTNRDGKLSLEEFIR  167 (181)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHH---HHHHHHHSCTTCSSEECHHHHHH
T ss_pred             HHhccCCCCeecHHHHHHHHHHHhhhccccccCCcccccHHHH---HHHHHHHhCCCCCCcEeHHHHHH
Confidence            3467889999998885554222211            222222   33559999999999999998764

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=81.56  E-value=0.32  Score=35.82  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             HHHHHhhhccCCCCCccChhhhhh
Q 013211          421 QICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       421 ~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ++.+.|+..|.|++|+|+..||..
T Consensus        16 ~l~~~F~~~D~d~~G~I~~~el~~   39 (81)
T d1fi5a_          16 ELSDLFRMFDKNADGYIDLEELKI   39 (81)
T ss_dssp             HHHHHHHHHCSSCSSEECHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHH
Confidence            456889999999999999999863

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=81.32  E-value=0.78  Score=37.18  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=41.7

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      +...|.+.+|.++..++....-..-.+++++++..+.+.++ .+.|++|+|+..|.+.
T Consensus        88 F~~~D~~~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~d-~~~d~~G~I~y~eF~~  144 (152)
T d1wdcc_          88 FKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTD-LQEDLEGNVKYEDFVK  144 (152)
T ss_dssp             HHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHHT-CCCCTTSEEEHHHHHH
T ss_pred             hhccccccCccchHHHHHHHHHHcCCCCCHHHHHHHHHHhc-cCCCCCCEEEHHHHHH
Confidence            44568899999999886554333337789999998877764 3346789999988763

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.97  Score=37.45  Aligned_cols=43  Identities=23%  Similarity=0.474  Sum_probs=28.8

Q ss_pred             ccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccCh--hhhh
Q 013211          392 IDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITL--ADLM  443 (447)
Q Consensus       392 id~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~--~dl~  443 (447)
                      .|.+|.++..+|+..+..         +..+.+.|+++|.|++|.|++  .|.+
T Consensus       122 ~d~~g~i~~~eF~~~~~~---------~~~~~~~f~~~D~d~~G~Itl~~~eFl  166 (172)
T d1juoa_         122 YSTNGKITFDDYIACCVK---------LRALTDSFRRRDTAQQGVVNFPYDDFI  166 (172)
T ss_dssp             TCSSSSEEHHHHHHHHHH---------HHHHHHHHHHTCTTCCSEEEEEHHHHH
T ss_pred             HHhcCCcCHHHHHHHHHH---------HHHHHHHHHHhCCCCCCcEEecHHHHH
Confidence            456666666666554332         234567899999999999865  5543

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.28  E-value=0.67  Score=35.22  Aligned_cols=51  Identities=18%  Similarity=0.215  Sum_probs=36.1

Q ss_pred             HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      +...| +.+|.++..|..- .+ ..-.+.++++..|   ++..|.|++|+|+.+|..
T Consensus        16 F~~~D-~~~G~i~~~el~~-~l-~~~gl~~~~L~~I---w~~~D~~~dG~l~~~EF~   66 (95)
T d2jxca1          16 FDSLS-PVNGFLSGDKVKP-VL-LNSKLPVDILGRV---WELSDIDHDGMLDRDEFA   66 (95)
T ss_dssp             HHHTC-CBTTEEEHHHHHH-HH-TTSSCCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             HHHhC-CCCCceeHHHHHH-HH-HHcCCCHHHHHHH---HHHhcCCCCCeEcHHHHH
Confidence            34456 7789888877433 23 3445788877744   666799999999999874

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.25  E-value=0.22  Score=39.35  Aligned_cols=31  Identities=16%  Similarity=0.161  Sum_probs=21.7

Q ss_pred             CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211          413 KISEKDVMQICHKFDRLDTGNCGKITLADLM  443 (447)
Q Consensus       413 ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~  443 (447)
                      .+++++...+.+.|+.+|.|++|+|+..++.
T Consensus        15 ~lt~ee~~~y~~lF~~~D~d~~G~Is~~e~~   45 (110)
T d1iq3a_          15 RITEEQREYYVNQFRSLQPDPSSFISGSVAK   45 (110)
T ss_dssp             CCSSSSHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcccchhHHHHH
Confidence            4666666677777777777777777776664

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.11  E-value=0.7  Score=38.40  Aligned_cols=57  Identities=28%  Similarity=0.423  Sum_probs=35.0

Q ss_pred             hhhhccCCCCcChHHHHHH---HHHHhCCCC-----HHHHHHH-HHHhhhccCCCCCccChhhhhh
Q 013211          388 LAADIDNNGFVSKSEYVIY---KLKEMGKIS-----EKDVMQI-CHKFDRLDTGNCGKITLADLME  444 (447)
Q Consensus       388 ~~~did~~g~vs~~ef~~~---~L~~~~ki~-----~edv~~i-~~~F~~ld~~~~G~l~~~dl~~  444 (447)
                      ...|.+.+|.++..|+...   .+..++...     ++...++ .+-|+++|.|++|.||.+|..+
T Consensus        94 ~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~  159 (178)
T d1s6ca_          94 NLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE  159 (178)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhhccCCCCeecHHHHHHHHHHHHhhcccccccCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            3457888999988876443   122233222     2222333 3559999999999999999764