Citrus Sinensis ID: 013235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEccEEEEccccEEEEEcccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHcccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHccEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccHcccccccccccEEEEEEcEEEEccccEEEEccHHHHcccccEccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHcccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEcccEcccccEcccccHHHHHHHHHHHHccEEEEEcccccccccccccHEEHcccccccEEEEccccccccccEEEEEcHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEcccccccEcHHHHHHHHHHHcccEEEEcccc
Coil and Loop (DISEMBL)
MQRFAARRVLsetnslrlpqrcffsQLAQKEESSLsehetflprmppfdyspppydgpsaDEILAKRKtflspslfhlyskplnvvdgkmqYLFDENGRRYLDAfggiatvccghchpyvvDSIVNQIKRIQHSTVLYLNHAIADFAEALaskmpgnlKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNayhgnaagtmgataqsnwKFNVVQTgvhhalnpdpyrgvfgadgemYAKDVQDLidfgtsghvagfLSESiqgvggiielapgylpAVYKSIKKAGGLCIADEVQAgfartgshfwgfeahgvvpDIVTMAKgigngiplgavvttpeiAEVLTRRNyfntfggnpvctaAGHAVLKVIQkdklqnnaHVVGSYLKERLTALKDkygiigdvrgrgfllgvefvtdrqlktpakaETLYIMDKMKGICALFFSQY
Flexible Loop (DISEMBL)
mqrfaarrvlsetnslrlpqrcFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFhlyskplnvvdGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGvefvtdrqlktpakaetlyIMDKMKGICALFFSQY
Low Complexity Region (SEG)
MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY
Disordered region (IsUnstruct)
*********************CF***************************************ILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF***
Disordered Region (DISOPRED)
******************************************PRMPPFDYSP**Y**PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ*****NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY
Disordered Region (DISEMBL)
**********SETNSLRLPQRCFFSQL************TFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY
Disordered Region (DISPRO)
****************RLPQRCF**QL*QK***********LPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q9SR86	481	Alanine--glyoxylate amino	yes	no	0.986	0.916	0.743	0.0
Q94AL9	477	Alanine--glyoxylate amino	no	no	0.984	0.922	0.735	0.0
Q940M2	476	Alanine--glyoxylate amino	no	no	0.894	0.840	0.65	1e-161
Q17QF0	514	Alanine--glyoxylate amino	yes	no	0.946	0.822	0.405	2e-96
Q9BYV1	514	Alanine--glyoxylate amino	yes	no	0.868	0.754	0.422	2e-95
Q5RFA3	514	Alanine--glyoxylate amino	yes	no	0.868	0.754	0.424	4e-95
Q3UEG6	513	Alanine--glyoxylate amino	yes	no	0.883	0.769	0.421	3e-94
Q64565	512	Alanine--glyoxylate amino	yes	no	0.883	0.771	0.416	1e-93
Q8BWU8	499	Ethanolamine-phosphate ph	no	no	0.836	0.749	0.435	9e-82
Q6DEB1	509	Ethanolamine-phosphate ph	N/A	no	0.834	0.732	0.432	9e-82

>sp|Q9SR86|AGT23_ARATH Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/444 (74%), Positives = 387/444 (87%), Gaps = 3/444 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSL--SEHETFLPRMPPFDYSPPPYDGP 58
           M++  A   L + N+  LP R   SQ A +  SS+  +E ET LP+MPPF+YSPPPYDGP
Sbjct: 1   MRKLTAVNSLLKRNNYLLP-RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGP 59

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  EI+AKR+ FLSP+LFH Y+ PLN+V+ KMQY+FDENGRRYLDAFGGIATV CGHCHP
Sbjct: 60  STAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHP 119

Query: 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
            VV+S+V Q+K I HST+LYLNH I+DFAEAL S +PG+LKVVFFTNSGTEANELA+MMA
Sbjct: 120 EVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMA 179

Query: 179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM 238
           RLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE 
Sbjct: 180 RLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEK 239

Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
           YA DV DLI FGTSG VAGF+ ESIQGVGGI+ELAPGYLPA Y  ++KAGG+CIADEVQ+
Sbjct: 240 YASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQS 299

Query: 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
           GFARTG+HFWGF++HGV+PDIVTMAKGIGNGIPLGAVVTTPEIA VL+RR+YFNTFGGNP
Sbjct: 300 GFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIAGVLSRRSYFNTFGGNP 359

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +CTAAGHAVL+V+ ++KLQ NA++VGS+LK RLT LK+KY +IGDVRGRG +LGVEFV D
Sbjct: 360 MCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIGDVRGRGLMLGVEFVKD 419

Query: 419 RQLKTPAKAETLYIMDKMKGICAL 442
           R LKTPAKAETL++MD+MK +  L
Sbjct: 420 RDLKTPAKAETLHLMDQMKEMGVL 443

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 4

>sp|Q94AL9|AGT22_ARATH Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/443 (73%), Positives = 378/443 (85%), Gaps = 3/443 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQRFAA+R +    S+ L +RC  S  +Q   +S+ + + F  R+PPF Y+PPPY GPSA
Sbjct: 1   MQRFAAKRSVQNI-SVSLWRRCI-SSTSQAATASVKDSDEFQARLPPFAYTPPPYTGPSA 58

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           D IL+KRK FLSPS+F LY KPLN+VDGKMQYLFDE+GRRYLDAF GIA V CGHCHP V
Sbjct: 59  DVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAFAGIAVVNCGHCHPDV 118

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V+ ++NQIKR+QH TVLYLNHAIADF+EALASK+PG+LKVVFFTNSGTEANELA+MMA+L
Sbjct: 119 VEPVINQIKRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSGTEANELALMMAKL 178

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC DI+++RN YHGNAA TMGAT QS WKFNVVQ  VHHALNPDPYRGVFG+DGE YA
Sbjct: 179 YTGCQDIVAVRNGYHGNAAATMGATGQSMWKFNVVQNSVHHALNPDPYRGVFGSDGEKYA 238

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KD+QDLI +GT+GH+AGF+ E+IQGVGGI+ELAPGYL A Y ++KKAGGL IADEVQ+GF
Sbjct: 239 KDLQDLIQYGTTGHIAGFICEAIQGVGGIVELAPGYLSAAYDTVKKAGGLFIADEVQSGF 298

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTG +FWGFEAH VVPDIVTMAKGIGNG PLGAVVTTPEIA VLTRR+YFNTFGGN V 
Sbjct: 299 ARTG-NFWGFEAHNVVPDIVTMAKGIGNGFPLGAVVTTPEIAGVLTRRSYFNTFGGNSVS 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           T AG AVL VI+K+KLQ NA +VGSYLKE+LT LK+K+ IIGDVRGRG +LGVE V+DR+
Sbjct: 358 TTAGLAVLNVIEKEKLQENAAMVGSYLKEKLTQLKEKHEIIGDVRGRGLMLGVELVSDRK 417

Query: 421 LKTPAKAETLYIMDKMKGICALF 443
           LKTPA AETL+IMD+MK +  L 
Sbjct: 418 LKTPATAETLHIMDQMKELGVLI 440

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q940M2|AGT21_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1

 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 260/400 (65%), Positives = 326/400 (81%)

Query: 43  PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           P +PPF + P PY GPSADE+L KRK FL PSLFH Y KPLN+V+GKMQYL+DE+GRRYL
Sbjct: 39  PHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYL 98

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           DAF GI TV CGHCHP ++++I  Q K +QH+T +YL+HAI DFAEALA+KMPGNLKVV+
Sbjct: 99  DAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVY 158

Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222
           F NSG+EANELA+MMARLYTG  ++ISLRNAYHG ++ T+G TA + WK+ + Q  +HH 
Sbjct: 159 FVNSGSEANELAMMMARLYTGSLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHV 218

Query: 223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
           +NPDPYRGVFG+DG +YAKDV D I++GTSG VAGF++E+IQGVGG +ELAPGYL +VY+
Sbjct: 219 VNPDPYRGVFGSDGSLYAKDVHDHIEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYE 278

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
            ++ AGG+CIADEVQ GF RTGSH+WGF+   VVPDIVTMAKGIGNG+PLGAVVTTPEIA
Sbjct: 279 IVRNAGGVCIADEVQTGFGRTGSHYWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIA 338

Query: 343 EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
            VL  +  FNTFGGNPVC+A G AVL VI K+K Q +   VGS+L +RL  ++ ++ IIG
Sbjct: 339 SVLASKILFNTFGGNPVCSAGGLAVLNVIDKEKRQEHCAEVGSHLIQRLKDVQKRHDIIG 398

Query: 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL 442
           DVRGRG ++G+E V+DR+ KTPAKAET  + ++++ +  L
Sbjct: 399 DVRGRGLMVGIELVSDRKDKTPAKAETSVLFEQLRELGIL 438

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q17QF0|AGT2_BOVIN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1

 Score =  352 bits (904), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 182/449 (40%), Positives = 272/449 (60%), Gaps = 26/449 (5%)

Query: 7   RRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFL-PRMPPFDYSPPPYDGPSADEILA 65
           R +  +T SL +P+ CF S  A+   +S++       P MPP D++P  Y   +   +L 
Sbjct: 10  RSLHLKTLSLWIPKTCF-SLKARAFWTSVTRCGLHTKPSMPPCDFTPERYQSLAYSRVLE 68

Query: 66  KRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIV 125
             K  LSP     + +PL +  G +++LFD  G RYLD F GI TV  GHCHP V  +  
Sbjct: 69  IHKQHLSPVHTAYFPEPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCHPKVNAAAQ 128

Query: 126 NQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN 185
            Q+ R+ H++ ++ +  I ++AE L++ +P  LKVVF  NSG+EAN+LA++MAR ++   
Sbjct: 129 RQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKVVFLVNSGSEANDLAMLMARAHSNST 188

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGAD--------- 235
           DIIS R AYHG +  T+G T    +K ++    G    + PD + G +G           
Sbjct: 189 DIISFRGAYHGCSPYTLGLTNVGIYKMDLPHGMGCQPTMCPDIFHGPWGGSHCRDSPVQT 248

Query: 236 -------------GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
                         + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++
Sbjct: 249 IRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFE 308

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
            +++ GG+CIADEVQ GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTTP+IA
Sbjct: 309 LVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIA 368

Query: 343 EVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII 401
           + LT+R  +FNTFGGNP+  A G AVL+VI+++ LQ N+  VG+Y+  +L  L+D++ I+
Sbjct: 369 KSLTKRMLHFNTFGGNPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIV 428

Query: 402 GDVRGRGFLLGVEFVTDRQLKTPAKAETL 430
           GDVRG+G ++G+E V D++ + P   E +
Sbjct: 429 GDVRGKGLMIGIEMVKDKESRQPLPREEV 457

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q9BYV1|AGT2_HUMAN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/412 (42%), Positives = 249/412 (60%), Gaps = 24/412 (5%)

Query: 43  PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           PRMPP D+ P  Y     + +L   K  LSP +   + KPL +  G M++LFD  G RYL
Sbjct: 46  PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYL 105

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           D F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE LA+ +P  LKV+F
Sbjct: 106 DFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIF 165

Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHH 221
             NSG+EANELA++MAR ++   DIIS R AYHG +  T+G T    +K  +   TG   
Sbjct: 166 LVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQP 225

Query: 222 ALNPDPYRGVFGAD----------------------GEMYAKDVQDLIDFGTSGHVAGFL 259
            + PD +RG +G                         + Y +  +D +    +  +AGF 
Sbjct: 226 TMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFF 285

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
           +E IQGV G+++   G+L   ++ ++  GG+CIADEVQ GF R GSHFWGF+ H V+PDI
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 345

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTR-RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           VTMAKGIGNG P+ AV+TTPEIA+ L +   +FNTFGGNP+  A G AVL+VI+++ LQ 
Sbjct: 346 VTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQE 405

Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETL 430
           N+  VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+    P   E +
Sbjct: 406 NSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEV 457

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1

 Score =  348 bits (894), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 175/412 (42%), Positives = 250/412 (60%), Gaps = 24/412 (5%)

Query: 43  PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           PRMPP D+ P  Y     + +L   K  LSP +   + KPL +  G M++LFD  G RYL
Sbjct: 46  PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGNRYL 105

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           D F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE LA+ +P  LKV+F
Sbjct: 106 DFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIF 165

Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHH 221
             NSG+EANELA++MAR ++   DIIS R AYHG +  T+G T    +K  +   TG   
Sbjct: 166 LVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNIGTYKMELPGGTGCQP 225

Query: 222 ALNPDPYRGVFGAD----------------------GEMYAKDVQDLIDFGTSGHVAGFL 259
            + PD +RG +G                         + Y +  +D +    +  +AGF 
Sbjct: 226 TMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFF 285

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
           +E IQGV G+++   G+L   ++ ++  GG+CIADEVQ GF R GSHF GF+ H V+PDI
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFRGFQTHDVLPDI 345

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           VTMAKGIGNG P+ AVVTTPEIA+ L +R  +FNTFGGNP+  A G AVL+VI+++ LQ 
Sbjct: 346 VTMAKGIGNGFPMAAVVTTPEIAKSLVKRLQHFNTFGGNPMACAIGSAVLEVIKEENLQE 405

Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETL 430
           N+  VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+  + P   E +
Sbjct: 406 NSQEVGTYMLLQFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISRRPLPREEV 457

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q3UEG6|AGT2_MOUSE Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1

 Score =  345 bits (886), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 177/420 (42%), Positives = 253/420 (60%), Gaps = 25/420 (5%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDA 104
           MPP D+SP  Y   +   +LA  K  LSP     + KPL +  G M++LFD  G RYLD 
Sbjct: 47  MPPCDFSPEKYQSLAYSRVLAIHKQHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDF 106

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT 164
           F GI TV  GHCHP V      QI R+ H++ ++ +  + ++AE L++ +P  LKV+F  
Sbjct: 107 FSGIVTVSVGHCHPKVSAVAKKQIDRLWHTSSVFFHSPMHEYAEKLSALLPEPLKVIFLV 166

Query: 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHAL 223
           NSG+EAN+LA++MAR ++   DIIS R AYHG +  T+G T    +K  V    G    +
Sbjct: 167 NSGSEANDLAMVMARAHSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMEVPGGIGCQSTM 226

Query: 224 NPDPYRGVFGA----------------------DGEMYAKDVQDLIDFGTSGHVAGFLSE 261
            PD +RG +G                         E Y +  +D ++   +  +AGF +E
Sbjct: 227 CPDVFRGPWGGIHCRDSPVQTVRDCSCAPDCCQAKERYIEQFKDTLNTSVATSIAGFFAE 286

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            IQGV G+++    +L   +  +++ GG+CIADEVQ GF R GSHFWGF+ H V+PDIVT
Sbjct: 287 PIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVT 346

Query: 322 MAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
           MAKGIGNG P+ AVVTTPEIA+ L +R  +F+TFGGNP+  A G AVL+VI+++ LQ N+
Sbjct: 347 MAKGIGNGFPMAAVVTTPEIAKSLAKRLLHFSTFGGNPLACAIGSAVLEVIEEENLQRNS 406

Query: 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMKGI 439
             VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+  + P  K E   I +  K +
Sbjct: 407 QEVGTYMLLKFAKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHEDCKDM 466

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q64565|AGT2_RAT Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2

 Score =  344 bits (882), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/420 (41%), Positives = 253/420 (60%), Gaps = 25/420 (5%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDA 104
           MPP D+SP  Y   + + +L   K  LSP     + KPL +  G M++LFD  G RYLD 
Sbjct: 46  MPPCDFSPEKYQSLAYNHVLEIHKQHLSPVNTAYFQKPLLLHQGHMEWLFDSEGNRYLDF 105

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT 164
           F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE L++ +P  LKV+F  
Sbjct: 106 FSGIVTVGVGHCHPKVTAVAKKQMDRLWHTSSVFFHSPMHEYAERLSALLPEPLKVIFLV 165

Query: 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHAL 223
           NSG+EAN+LA++MAR Y+   DIIS R AYHG +  T+G T    +K  V  T      +
Sbjct: 166 NSGSEANDLAMVMARAYSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMKVPSTIACQSTM 225

Query: 224 NPDPYRGVFGA------------------DG----EMYAKDVQDLIDFGTSGHVAGFLSE 261
            PD +RG +G                   DG    E Y +  +D ++   +  +AGF +E
Sbjct: 226 CPDVFRGPWGGSHCRDSPVQTVRKCSCAPDGCQAKERYIEQFKDTLNTSVATSIAGFFAE 285

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            IQGV G+++    +L   +  +++ GG+CIADEVQ GF R GSHFWGF+ H  +PDIVT
Sbjct: 286 PIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDTMPDIVT 345

Query: 322 MAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
           MAKGIGNG P+ AVVTTPEIA  L +  ++F+TFGG+P+  A G AVL+VI+++ LQ N+
Sbjct: 346 MAKGIGNGFPMAAVVTTPEIASSLAKHLHHFSTFGGSPLACAIGSAVLEVIEEENLQRNS 405

Query: 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMKGI 439
             VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+  + P  K E   I +  K +
Sbjct: 406 QEVGTYMLLKFAKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHEDCKDM 465

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q8BWU8|AT2L1_MOUSE Ethanolamine-phosphate phospho-lyase OS=Mus musculus GN=Agxt2l1 PE=2 SV=1

 Score =  304 bits (779), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 172/395 (43%), Positives = 243/395 (61%), Gaps = 21/395 (5%)

Query: 59  SADEILAKRKTFLSPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           S  + LA R+  + PS    ++  P+ ++  + QY+FDE G RYLD    +A V  GHCH
Sbjct: 6   SKQDTLALRERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVAHV--GHCH 63

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P VV +   Q++ + ++   +L+  I +FA+ L + +P  L V +FTNSG+EAN+LA+ +
Sbjct: 64  PEVVKAAAKQMELL-NTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDLALRL 122

Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFG 233
           AR + G  D+I+L +AYHG+ +  +     S +KF    +V +  VH A  PD YRG + 
Sbjct: 123 ARQFRGHQDVITLDHAYHGHLSSLIEI---SPYKFQKGKDVKRETVHVAPAPDTYRGKYR 179

Query: 234 ADGE----MYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287
            D E     YA +V+ +I+   S    +A F++ES+Q  GG I    GY   V + I KA
Sbjct: 180 EDHEDPSTAYADEVKKIIEEAHSSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEHIHKA 239

Query: 288 GGLCIADEVQAGFARTGSHFWGFEAHG--VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL 345
           GG+ IADEVQ GF R G +FW F+ +G   VPDIVTM K +GNG P+  VVTT EIAE  
Sbjct: 240 GGVFIADEVQVGFGRVGRYFWSFQMYGEDFVPDIVTMGKPMGNGHPISCVVTTKEIAEAF 299

Query: 346 TRR--NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD 403
           +     YFNT+GGNPV  A G AVL VI+K+ LQ NA  VG+YL E L+  K K+ +IGD
Sbjct: 300 SSSGMEYFNTYGGNPVSCAVGLAVLDVIEKENLQGNAVRVGTYLMELLSEQKAKHPLIGD 359

Query: 404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG 438
           +RG G  +G++ V DR+ +TPA AE  +I+ +MKG
Sbjct: 360 IRGVGLFIGIDLVKDREKRTPATAEAQHIIYEMKG 394

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6DEB1|AT2L1_XENLA Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1

 Score =  304 bits (778), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 171/395 (43%), Positives = 237/395 (60%), Gaps = 22/395 (5%)

Query: 59  SADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           + ++I+  RK  + PS    ++  P+ +V  K QY+FDE G RYLD    +A V  GH H
Sbjct: 6   TKEKIMEIRKKHIGPSCKVFFANDPIKIVHAKGQYMFDEKGERYLDCINNVAHV--GHSH 63

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P V  + + Q++ + ++   +L+  +  +AE L S +P  L V +F NSG+EAN+LA+ +
Sbjct: 64  PEVTKAALKQMELL-NTNSRFLHDNLVRYAECLISTLPEKLSVCYFVNSGSEANDLALRL 122

Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-----QTGVHHALNPDPYRGVF 232
           AR YTG  D+I+L +AYHG+    +     S +KF+ +     +  +H A +PD YRG +
Sbjct: 123 ARQYTGHQDVITLDHAYHGHVTSLIDI---SPYKFHQLGKDAQKEYIHVAPSPDTYRGKY 179

Query: 233 GAD----GEMYAKDVQDLID--FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
             D       YAKDV+D+I         +A F++ES+Q  GG I    GY   V + + K
Sbjct: 180 REDHPDPASAYAKDVEDIIQKAHQNKRQIAAFIAESMQSCGGQIIPPAGYFQKVSEFVHK 239

Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHG--VVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           AGG+ IADEVQ GF R G HFW F+  G   +PDIVTM K IGNG P+  VVTT EIAE 
Sbjct: 240 AGGVFIADEVQVGFGRVGKHFWSFQLQGEDFLPDIVTMGKPIGNGHPMSCVVTTKEIAEA 299

Query: 345 L--TRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
              T   YFNTFGGNPV  A G AVL +I+K+ L+ NA  VG+YL E L   K K+ +IG
Sbjct: 300 FGATGMEYFNTFGGNPVSCAIGLAVLDIIEKEDLRGNATTVGNYLTELLNEQKQKHPLIG 359

Query: 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
           D+RG G  +GV+ V DR  +TPA AE  +I+ K+K
Sbjct: 360 DIRGVGLFVGVDLVKDRLFRTPATAEAQHIIYKLK 394

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
255580991	480	alanine-glyoxylate aminotransferase, put	0.986	0.918	0.835	0.0
224140569	479	predicted protein [Populus trichocarpa]	0.986	0.920	0.831	0.0
224091092	477	predicted protein [Populus trichocarpa]	0.984	0.922	0.821	0.0
225439615	477	PREDICTED: alanine--glyoxylate aminotran	0.982	0.920	0.809	0.0
452090844	477	putative beta-alanine-pyruvate aminotran	0.984	0.922	0.792	0.0
449464422	477	PREDICTED: alanine--glyoxylate aminotran	0.984	0.922	0.787	0.0
297735576	436	unnamed protein product [Vitis vinifera]	0.890	0.912	0.856	0.0
225434396	478	PREDICTED: alanine--glyoxylate aminotran	0.986	0.922	0.776	0.0
356496283	475	PREDICTED: alanine--glyoxylate aminotran	0.979	0.922	0.758	0.0
15231974	481	PYRIMIDINE 4 [Arabidopsis thaliana] gi|7	0.986	0.916	0.743	0.0

>gi|255580991|ref|XP_002531313.1| alanine-glyoxylate aminotransferase, putative [Ricinus communis] gi|223529081|gb|EEF31063.1| alanine-glyoxylate aminotransferase, putative [Ricinus communis]

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/443 (83%), Positives = 405/443 (91%), Gaps = 2/443 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESS-LSEHETFLPRMPPFDYSPPPYDGPS 59
           MQRF ARRVLSET S     RCFFSQLAQKE SS + E+E F+P+MPPFDYSPPPY GPS
Sbjct: 1   MQRFIARRVLSETKSFP-SSRCFFSQLAQKESSSSVHENEVFIPKMPPFDYSPPPYTGPS 59

Query: 60  ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY 119
           A EI+AKRK FLSPS+FH Y KPLNVVDGKMQYLFDENGRRY+DAFGGIATVCCGHCHP 
Sbjct: 60  AAEIIAKRKEFLSPSIFHFYDKPLNVVDGKMQYLFDENGRRYVDAFGGIATVCCGHCHPE 119

Query: 120 VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR 179
           VVDSIV QI RIQHSTVLYLNHAI+DFAEALASKMPGNLKVVFFTNSGTEANELA+M+AR
Sbjct: 120 VVDSIVKQINRIQHSTVLYLNHAISDFAEALASKMPGNLKVVFFTNSGTEANELAMMIAR 179

Query: 180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239
           LYTGCNDIISLRNAYHGNA+GTMGATAQSNWKFNV+Q+G+HHALNPDPYRGVFG+DGE Y
Sbjct: 180 LYTGCNDIISLRNAYHGNASGTMGATAQSNWKFNVIQSGIHHALNPDPYRGVFGSDGEKY 239

Query: 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
           A+DVQ++IDFGT+GHVAGF+SE+IQGVGGI+ELAPGYLPA Y SI+KAGG+CIADEVQ+G
Sbjct: 240 ARDVQEIIDFGTTGHVAGFISEAIQGVGGIVELAPGYLPAAYNSIRKAGGVCIADEVQSG 299

Query: 300 FARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPV 359
           FARTGSHFWGFE  GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR+YFNTFGGNPV
Sbjct: 300 FARTGSHFWGFETQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRSYFNTFGGNPV 359

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
           CTAAG AVL+VI+K+ LQ NA +VGS+LK RL  LKDKY IIGDVRG+G +LGVE VTDR
Sbjct: 360 CTAAGLAVLRVIEKENLQENASIVGSHLKNRLNELKDKYEIIGDVRGKGLMLGVELVTDR 419

Query: 420 QLKTPAKAETLYIMDKMKGICAL 442
           Q KTPAKAETL+IMD+MK I  L
Sbjct: 420 QQKTPAKAETLHIMDQMKEIGVL 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140569|ref|XP_002323655.1| predicted protein [Populus trichocarpa] gi|222868285|gb|EEF05416.1| predicted protein [Populus trichocarpa]

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/444 (83%), Positives = 403/444 (90%), Gaps = 3/444 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEES-SLSEHETFLPRMPPFDYSPPPYDGPS 59
           MQRF A+RVLS TNSLR   RCF SQLAQK+ S ++ +++  +P++PPFDYSPPPY GPS
Sbjct: 1   MQRFIAKRVLSSTNSLR-SHRCF-SQLAQKQTSFAVHDNDIPVPKLPPFDYSPPPYTGPS 58

Query: 60  ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY 119
           AD ILAKRK +LSPSLFH +SKPLNVVDGKMQYLFDENGRRYLD FGGIATVCCGHCHP 
Sbjct: 59  ADLILAKRKQYLSPSLFHFFSKPLNVVDGKMQYLFDENGRRYLDGFGGIATVCCGHCHPD 118

Query: 120 VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR 179
           VVD+IV Q+ RIQHSTVLYLNH IADFAEALASKMPGNLKVVFFTNSGTEANELA+M+AR
Sbjct: 119 VVDAIVKQVNRIQHSTVLYLNHVIADFAEALASKMPGNLKVVFFTNSGTEANELALMIAR 178

Query: 180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239
           LYTGC DIISLRN YHGNAAGTMGATAQS WKFNV+Q+GVHHALNPDPYRGVFG+DGEMY
Sbjct: 179 LYTGCQDIISLRNGYHGNAAGTMGATAQSLWKFNVIQSGVHHALNPDPYRGVFGSDGEMY 238

Query: 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
           AKDVQD+IDFGTSGHVAGF+SE+IQGVGGIIELAP YLPA YKSIKKAGGLCIADEVQAG
Sbjct: 239 AKDVQDIIDFGTSGHVAGFISEAIQGVGGIIELAPDYLPAAYKSIKKAGGLCIADEVQAG 298

Query: 300 FARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPV 359
           F RTGSHFWGFEA GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR YFNTFGGNP+
Sbjct: 299 FGRTGSHFWGFEAQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRCYFNTFGGNPL 358

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
           CTAAG AVLKVI+K+ LQ NA VVGS+LK+RLT LKDKY IIGDVRG+G +LGVE VTDR
Sbjct: 359 CTAAGLAVLKVIEKENLQENALVVGSHLKKRLTELKDKYEIIGDVRGKGLMLGVELVTDR 418

Query: 420 QLKTPAKAETLYIMDKMKGICALF 443
           Q KTPAKAETL++M++MK +  L 
Sbjct: 419 QQKTPAKAETLHVMEQMKELGVLI 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091092|ref|XP_002309175.1| predicted protein [Populus trichocarpa] gi|222855151|gb|EEE92698.1| predicted protein [Populus trichocarpa]

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/443 (82%), Positives = 402/443 (90%), Gaps = 3/443 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           M+RF  +RVLS TNSLR P RCF SQ AQK+ + L E+E  +P++PPFDYSPPPY GPSA
Sbjct: 1   MKRFITKRVLSSTNSLRSP-RCF-SQHAQKQ-TPLPENEIPVPKLPPFDYSPPPYTGPSA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           +EILAKRK +LSPSLFH +SKPLNVVDGKMQYLFDENGRRYLD FGGIATVCCGHCHP V
Sbjct: 58  EEILAKRKEYLSPSLFHFFSKPLNVVDGKMQYLFDENGRRYLDGFGGIATVCCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           VD+IV QI RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA+M+ARL
Sbjct: 118 VDAIVKQINRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAMMIARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC DIISLRNAYHGNAA TMGATAQS WKFNV+Q+GVHHALNPDPYRGVFG+DGE YA
Sbjct: 178 YTGCQDIISLRNAYHGNAAATMGATAQSVWKFNVIQSGVHHALNPDPYRGVFGSDGEKYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KDVQD+IDFGT+GHVAGF+SE+IQGVGGIIELAPGYLPA Y S++KAGGLCI+DEVQAGF
Sbjct: 238 KDVQDIIDFGTTGHVAGFISEAIQGVGGIIELAPGYLPAAYGSVRKAGGLCISDEVQAGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTG+HFWGFE  GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR+YFNTFGGNP+C
Sbjct: 298 GRTGNHFWGFETQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRSYFNTFGGNPLC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKV++K+ LQ NA VVGSYLK+RLT LKDKY IIGDVRG+G +LGVE VTDRQ
Sbjct: 358 TAAGLAVLKVMEKENLQENALVVGSYLKKRLTELKDKYEIIGDVRGKGLMLGVELVTDRQ 417

Query: 421 LKTPAKAETLYIMDKMKGICALF 443
            KTPAKAETL++M++MK +  L 
Sbjct: 418 QKTPAKAETLHVMEQMKELGVLI 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439615|ref|XP_002267787.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [Vitis vinifera]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/442 (80%), Positives = 394/442 (89%), Gaps = 3/442 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQRF   RV  E + L+   R   SQL Q + + L E++  LP+MPPFDYSPPPY+GPSA
Sbjct: 1   MQRFVVGRVSQEKHFLQW--RRNLSQLVQNK-APLQENDLLLPKMPPFDYSPPPYNGPSA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
            +IL KRK +LSPS+F  Y++P+N+VDGKMQYLFDE GRRYLDAFGGIATV CGHCHP V
Sbjct: 58  ADILQKRKQYLSPSIFCFYNQPVNIVDGKMQYLFDEKGRRYLDAFGGIATVNCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           VD IV QI R+QHSTVLYLNHAIADFAEALASKMPG+LKVVFFTNSGTEANELA+MMARL
Sbjct: 118 VDVIVKQINRLQHSTVLYLNHAIADFAEALASKMPGDLKVVFFTNSGTEANELAMMMARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGCNDIISLRNAYHGNAAGTMGATAQ  WKFNVVQTGVHHALNPDPYRG+FG+DGE YA
Sbjct: 178 YTGCNDIISLRNAYHGNAAGTMGATAQRVWKFNVVQTGVHHALNPDPYRGMFGSDGEKYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           +DVQDLIDFGTSGHVAGF+SE+IQGVGGI+ELAPGYLPAVY S+KKAGGL IADEVQ+GF
Sbjct: 238 RDVQDLIDFGTSGHVAGFISEAIQGVGGIVELAPGYLPAVYSSVKKAGGLFIADEVQSGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGSHFWGFE+ GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC
Sbjct: 298 ARTGSHFWGFESQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           T AGHAVLKVI+K+KLQ NA+VVGSYLKERL +LKDKY IIGDVRGRG +LGVEFVTDR+
Sbjct: 358 TTAGHAVLKVIEKEKLQENAYVVGSYLKERLLSLKDKYEIIGDVRGRGLMLGVEFVTDRK 417

Query: 421 LKTPAKAETLYIMDKMKGICAL 442
           LKTPA  E L+IMD+MK +  L
Sbjct: 418 LKTPANVEILHIMDQMKEMGVL 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|452090844|gb|AGF95093.1| putative beta-alanine-pyruvate aminotransferase [Prunus persica]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/443 (79%), Positives = 392/443 (88%), Gaps = 3/443 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQ    RRVLS T    L QRCF SQ+AQ E   L ++    P+MP FDY+PPPY GP+A
Sbjct: 1   MQGLIGRRVLSGTAQSLLRQRCF-SQVAQSE--VLPDNGVATPKMPLFDYTPPPYTGPTA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           DEILA+RK +LSPS+F+ Y+KPLN+VDGK QYLFDE+GRRYLD FGGIATV CGHCHP V
Sbjct: 58  DEILAQRKEYLSPSMFYFYNKPLNIVDGKRQYLFDESGRRYLDGFGGIATVSCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++IVNQ KRIQHST+LYLNHAI DFA+ALASK+P NLKVVFFTNSGTEANELA+++ARL
Sbjct: 118 VEAIVNQTKRIQHSTILYLNHAIGDFAQALASKLPANLKVVFFTNSGTEANELAMLIARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTG +DIISLRNAYHGNAAGTMGATAQ NWKFNV+Q+GVHHA+NPDPYRGVFGADGE YA
Sbjct: 178 YTGSHDIISLRNAYHGNAAGTMGATAQGNWKFNVIQSGVHHAVNPDPYRGVFGADGEKYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
            DVQDLIDFGTSGHVAGF+ E+IQGVGGI+ELA GYLPAVY S+KKAGGL IADEVQ GF
Sbjct: 238 NDVQDLIDFGTSGHVAGFMCEAIQGVGGIVELAQGYLPAVYNSVKKAGGLFIADEVQCGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGS+FWGFE HGVVPDIVTMAKGIGNGIPLGAVVTTPE+AEVLTRRNYFNTFGGNPVC
Sbjct: 298 ARTGSNFWGFEGHGVVPDIVTMAKGIGNGIPLGAVVTTPEVAEVLTRRNYFNTFGGNPVC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKVI+K+KLQ+NA VVGSYLKERL ALKDKY +IGDVRGRG +LGVE VTDR+
Sbjct: 358 TAAGLAVLKVIEKEKLQDNAFVVGSYLKERLNALKDKYELIGDVRGRGLMLGVELVTDRE 417

Query: 421 LKTPAKAETLYIMDKMKGICALF 443
           LKTPAKAET++IM+KMK +  L 
Sbjct: 418 LKTPAKAETVHIMEKMKDLGVLI 440

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464422|ref|XP_004149928.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Cucumis sativus]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/443 (78%), Positives = 395/443 (89%), Gaps = 3/443 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQR   RR+ S +N+  L +  +FSQ A  + S    ++  LP +PPFDYSPPPY+GPSA
Sbjct: 1   MQRLIRRRLFSPSNT-SLSRLRYFSQPAHNQPSL--HNDVPLPSIPPFDYSPPPYNGPSA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           DEIL+KRK FLSP++ H Y  PL VVDGK QYLFD+ GRRYLDAFGGIATVCCGHCHP V
Sbjct: 58  DEILSKRKEFLSPAISHYYRNPLLVVDGKRQYLFDDKGRRYLDAFGGIATVCCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++I+NQ KR+QHSTVLYLN +I+DFAEALASK+PG+LKVVFFTNSGTEANELAIMMARL
Sbjct: 118 VEAILNQTKRLQHSTVLYLNQSISDFAEALASKLPGDLKVVFFTNSGTEANELAIMMARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC+DIISLRNAYHGNAAGTMGATAQS WKFNV+Q+GVHHALNPDPYRGVFGADGEMYA
Sbjct: 178 YTGCHDIISLRNAYHGNAAGTMGATAQSIWKFNVIQSGVHHALNPDPYRGVFGADGEMYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KDVQ+LI+FGTSGHV  F+SE+IQGVGGI+ELAPGYLPAVYKSIKKAGGLCIADEVQAGF
Sbjct: 238 KDVQNLIEFGTSGHVGAFISEAIQGVGGIVELAPGYLPAVYKSIKKAGGLCIADEVQAGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGS FWGFE+ GVVPDIVT+AKGIGNG PLGAVVTTPEIA+VLTR +YFNTFGGNPVC
Sbjct: 298 ARTGSSFWGFESQGVVPDIVTLAKGIGNGTPLGAVVTTPEIAKVLTRSSYFNTFGGNPVC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKVI+K+KLQ NAH+VGS+LK+RLTALKDK+ IIGDVRGRG +LGVE VTDR+
Sbjct: 358 TAAGLAVLKVIEKEKLQENAHIVGSHLKDRLTALKDKHHIIGDVRGRGLMLGVELVTDRE 417

Query: 421 LKTPAKAETLYIMDKMKGICALF 443
           LKTPAKAETL++MD+MK +  L 
Sbjct: 418 LKTPAKAETLHVMDQMKELGVLI 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735576|emb|CBI18070.3| unnamed protein product [Vitis vinifera]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/398 (85%), Positives = 370/398 (92%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDA 104
           MPPFDYSPPPY+GPSA +IL KRK +LSPS+F  Y++P+N+VDGKMQYLFDE GRRYLDA
Sbjct: 1   MPPFDYSPPPYNGPSAADILQKRKQYLSPSIFCFYNQPVNIVDGKMQYLFDEKGRRYLDA 60

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT 164
           FGGIATV CGHCHP VVD IV QI R+QHSTVLYLNHAIADFAEALASKMPG+LKVVFFT
Sbjct: 61  FGGIATVNCGHCHPDVVDVIVKQINRLQHSTVLYLNHAIADFAEALASKMPGDLKVVFFT 120

Query: 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN 224
           NSGTEANELA+MMARLYTGCNDIISLRNAYHGNAAGTMGATAQ  WKFNVVQTGVHHALN
Sbjct: 121 NSGTEANELAMMMARLYTGCNDIISLRNAYHGNAAGTMGATAQRVWKFNVVQTGVHHALN 180

Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
           PDPYRG+FG+DGE YA+DVQDLIDFGTSGHVAGF+SE+IQGVGGI+ELAPGYLPAVY S+
Sbjct: 181 PDPYRGMFGSDGEKYARDVQDLIDFGTSGHVAGFISEAIQGVGGIVELAPGYLPAVYSSV 240

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           KKAGGL IADEVQ+GFARTGSHFWGFE+ GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV
Sbjct: 241 KKAGGLFIADEVQSGFARTGSHFWGFESQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 300

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
           LTRRNYFNTFGGNPVCT AGHAVLKVI+K+KLQ NA+VVGSYLKERL +LKDKY IIGDV
Sbjct: 301 LTRRNYFNTFGGNPVCTTAGHAVLKVIEKEKLQENAYVVGSYLKERLLSLKDKYEIIGDV 360

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL 442
           RGRG +LGVEFVTDR+LKTPA  E L+IMD+MK +  L
Sbjct: 361 RGRGLMLGVEFVTDRKLKTPANVEILHIMDQMKEMGVL 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434396|ref|XP_002270785.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Vitis vinifera]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/443 (77%), Positives = 391/443 (88%), Gaps = 2/443 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQR +        + L+L +R   S+LAQ +  +L + +  LP+MPPFDYSPPPY GPSA
Sbjct: 1   MQRISKISGALSGSYLQLCRRSL-SRLAQTQ-PALVDDDAVLPKMPPFDYSPPPYTGPSA 58

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
            EIL KR+ +LSPSLFH YS PLN+VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP V
Sbjct: 59  AEILKKRQEYLSPSLFHFYSNPLNLVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPDV 118

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++IV+Q +R+QHSTVLYLNHAIA+FAEALASKMPG+LKVVFFTNSGTEANELA+M+ARL
Sbjct: 119 VEAIVSQTQRLQHSTVLYLNHAIAEFAEALASKMPGDLKVVFFTNSGTEANELAMMIARL 178

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTG +DIISLRNAYHGNAA TM ATAQ N+KFNVVQTGVHHALNPD YRGVFG+DG  YA
Sbjct: 179 YTGFHDIISLRNAYHGNAAATMSATAQCNYKFNVVQTGVHHALNPDQYRGVFGSDGLKYA 238

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KDVQDLID+GT G+VAGFL+E+IQGVGGI+ELAPGYL AVY +IKKAGGLCIADEVQ+GF
Sbjct: 239 KDVQDLIDYGTCGNVAGFLAEAIQGVGGILELAPGYLAAVYGTIKKAGGLCIADEVQSGF 298

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGSHFWGFEAHGVVPDIVTMAKGIGNG+P+GAVVTTPEIA+VLT R YFNTFGGNPV 
Sbjct: 299 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGVPIGAVVTTPEIAKVLTYRTYFNTFGGNPVS 358

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TA+G AVL+VI+K+KLQ NAHVVGSYLK+RLT+LK+K+ IIGDVRGRG +LGVE VTDRQ
Sbjct: 359 TASGLAVLRVIEKEKLQENAHVVGSYLKDRLTSLKEKHEIIGDVRGRGLMLGVELVTDRQ 418

Query: 421 LKTPAKAETLYIMDKMKGICALF 443
           LKTPAK ETL++MDKMK +  L 
Sbjct: 419 LKTPAKVETLHVMDKMKEMGVLI 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496283|ref|XP_003516998.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [Glycine max]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/443 (75%), Positives = 387/443 (87%), Gaps = 5/443 (1%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           M  F A R++   +   L +R F     + E+ +++     +P +P FDYSPPPY GP+A
Sbjct: 1   MTVFLATRLVLRRSPPLLWRRSFSRAAVEAEKDTVA-----VPSLPLFDYSPPPYAGPTA 55

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           DEILAKR+ +LSPS+ H Y  P+N+V+GK QYLFDE GRRY+DAFGGIATVCCGHCHP V
Sbjct: 56  DEILAKRREYLSPSILHFYKNPVNIVEGKKQYLFDEKGRRYVDAFGGIATVCCGHCHPDV 115

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++IVNQ K++QHSTVLYLN+AIADFA+AL SK+PGNLKVVFFTNSGTEANELAI++ARL
Sbjct: 116 VEAIVNQTKKLQHSTVLYLNNAIADFAQALTSKLPGNLKVVFFTNSGTEANELAILIARL 175

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC+DIISLRNAYHGNAAGTMGATAQS WKFNVVQ+GVHHA+NPDPYRG+FG+DGE YA
Sbjct: 176 YTGCHDIISLRNAYHGNAAGTMGATAQSIWKFNVVQSGVHHAVNPDPYRGIFGSDGEKYA 235

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           +DVQD+I+FGTSG+VA F+SE+IQGVGGIIELAPGYLPAVY +IKK GGL IADEVQAGF
Sbjct: 236 RDVQDIINFGTSGNVAAFISEAIQGVGGIIELAPGYLPAVYNTIKKTGGLFIADEVQAGF 295

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTGSHFWGFEAH VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR+YFNTFGGNPVC
Sbjct: 296 GRTGSHFWGFEAHNVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRSYFNTFGGNPVC 355

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKVI+K++LQ NA VVGSYLKERLTALKDKY +IGDVRGRG +LGVE VTDR+
Sbjct: 356 TAAGLAVLKVIEKEQLQQNAFVVGSYLKERLTALKDKYELIGDVRGRGLMLGVELVTDRE 415

Query: 421 LKTPAKAETLYIMDKMKGICALF 443
           LKTPAK ETL++MD+MK +  L 
Sbjct: 416 LKTPAKGETLHVMDQMKELGVLI 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231974|ref|NP_187498.1| PYRIMIDINE 4 [Arabidopsis thaliana] gi|75313797|sp|Q9SR86.1|AGT23_ARATH RecName: Full=Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial; AltName: Full=Beta-alanine-pyruvate aminotransferase 3; Flags: Precursor gi|6403506|gb|AAF07846.1|AC010871_22 putative aminotransferase [Arabidopsis thaliana] gi|20466700|gb|AAM20667.1| putative aminotransferase [Arabidopsis thaliana] gi|110740902|dbj|BAE98547.1| aminotransferase like protein [Arabidopsis thaliana] gi|332641167|gb|AEE74688.1| PYRIMIDINE 4 [Arabidopsis thaliana]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/444 (74%), Positives = 387/444 (87%), Gaps = 3/444 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSL--SEHETFLPRMPPFDYSPPPYDGP 58
           M++  A   L + N+  LP R   SQ A +  SS+  +E ET LP+MPPF+YSPPPYDGP
Sbjct: 1   MRKLTAVNSLLKRNNYLLP-RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGP 59

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  EI+AKR+ FLSP+LFH Y+ PLN+V+ KMQY+FDENGRRYLDAFGGIATV CGHCHP
Sbjct: 60  STAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHP 119

Query: 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
            VV+S+V Q+K I HST+LYLNH I+DFAEAL S +PG+LKVVFFTNSGTEANELA+MMA
Sbjct: 120 EVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMA 179

Query: 179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM 238
           RLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE 
Sbjct: 180 RLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEK 239

Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
           YA DV DLI FGTSG VAGF+ ESIQGVGGI+ELAPGYLPA Y  ++KAGG+CIADEVQ+
Sbjct: 240 YASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQS 299

Query: 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
           GFARTG+HFWGF++HGV+PDIVTMAKGIGNGIPLGAVVTTPEIA VL+RR+YFNTFGGNP
Sbjct: 300 GFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIAGVLSRRSYFNTFGGNP 359

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +CTAAGHAVL+V+ ++KLQ NA++VGS+LK RLT LK+KY +IGDVRGRG +LGVEFV D
Sbjct: 360 MCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIGDVRGRGLMLGVEFVKD 419

Query: 419 RQLKTPAKAETLYIMDKMKGICAL 442
           R LKTPAKAETL++MD+MK +  L
Sbjct: 420 RDLKTPAKAETLHLMDQMKEMGVL 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2097623	481	PYD4 "PYRIMIDINE 4" [Arabidops	0.975	0.906	0.749	2.2e-183
TAIR|locus:2135237	476	AGT2 "alanine:glyoxylate amino	0.883	0.829	0.655	6.4e-147
FB|FBgn0037186	518	CG11241 [Drosophila melanogast	0.451	0.389	0.509	1.7e-103
ZFIN|ZDB-GENE-050913-100	517	agxt2 "alanine-glyoxylate amin	0.434	0.375	0.520	6.7e-100
UNIPROTKB|F1NQJ1	479	AGXT2 "Uncharacterized protein	0.447	0.417	0.497	6.1e-95
UNIPROTKB|E2QZD7	514	AGXT2 "Uncharacterized protein	0.449	0.391	0.482	1.1e-93
WB|WBGene00020382	444	T09B4.8 [Caenorhabditis elegan	0.442	0.445	0.527	4.9e-91
UNIPROTKB|Q17QF0	514	AGXT2 "Alanine--glyoxylate ami	0.429	0.373	0.497	8e-91
UNIPROTKB|F1MLG7	514	AGXT2 "Alanine--glyoxylate ami	0.429	0.373	0.497	1.7e-90
UNIPROTKB|Q9BYV1	514	AGXT2 "Alanine--glyoxylate ami	0.409	0.356	0.494	1.2e-89

TAIR|locus:2097623 PYD4 "PYRIMIDINE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1779 (631.3 bits), Expect = 2.2e-183, P = 2.2e-183
 Identities = 329/439 (74%), Positives = 385/439 (87%)

Query:     1 MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSL--SEHETFLPRMPPFDYSPPPYDGP 58
             M++  A   L + N+  LP R   SQ A +  SS+  +E ET LP+MPPF+YSPPPYDGP
Sbjct:     1 MRKLTAVNSLLKRNNYLLP-RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGP 59

Query:    59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
             S  EI+AKR+ FLSP+LFH Y+ PLN+V+ KMQY+FDENGRRYLDAFGGIATV CGHCHP
Sbjct:    60 STAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHP 119

Query:   119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
              VV+S+V Q+K I HST+LYLNH I+DFAEAL S +PG+LKVVFFTNSGTEANELA+MMA
Sbjct:   120 EVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMA 179

Query:   179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM 238
             RLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE 
Sbjct:   180 RLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEK 239

Query:   239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
             YA DV DLI FGTSG VAGF+ ESIQGVGGI+ELAPGYLPA Y  ++KAGG+CIADEVQ+
Sbjct:   240 YASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQS 299

Query:   299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
             GFARTG+HFWGF++HGV+PDIVTMAKGIGNGIPLGAVVTTPEIA VL+RR+YFNTFGGNP
Sbjct:   300 GFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIAGVLSRRSYFNTFGGNP 359

Query:   359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
             +CTAAGHAVL+V+ ++KLQ NA++VGS+LK RLT LK+KY +IGDVRGRG +LGVEFV D
Sbjct:   360 MCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIGDVRGRGLMLGVEFVKD 419

Query:   419 RQLKTPAKAETLYIMDKMK 437
             R LKTPAKAETL++MD+MK
Sbjct:   420 RDLKTPAKAETLHLMDQMK 438

GO:0003824 "catalytic activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0007568 "aging" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2135237 AGT2 "alanine:glyoxylate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 259/395 (65%), Positives = 324/395 (82%)

Query:    43 PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
             P +PPF + P PY GPSADE+L KRK FL PSLFH Y KPLN+V+GKMQYL+DE+GRRYL
Sbjct:    39 PHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYL 98

Query:   103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
             DAF GI TV CGHCHP ++++I  Q K +QH+T +YL+HAI DFAEALA+KMPGNLKVV+
Sbjct:    99 DAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVY 158

Query:   163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222
             F NSG+EANELA+MMARLYTG  ++ISLRNAYHG ++ T+G TA + WK+ + Q  +HH 
Sbjct:   159 FVNSGSEANELAMMMARLYTGSLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHV 218

Query:   223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
             +NPDPYRGVFG+DG +YAKDV D I++GTSG VAGF++E+IQGVGG +ELAPGYL +VY+
Sbjct:   219 VNPDPYRGVFGSDGSLYAKDVHDHIEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYE 278

Query:   283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
              ++ AGG+CIADEVQ GF RTGSH+WGF+   VVPDIVTMAKGIGNG+PLGAVVTTPEIA
Sbjct:   279 IVRNAGGVCIADEVQTGFGRTGSHYWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIA 338

Query:   343 EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
              VL  +  FNTFGGNPVC+A G AVL VI K+K Q +   VGS+L +RL  ++ ++ IIG
Sbjct:   339 SVLASKILFNTFGGNPVCSAGGLAVLNVIDKEKRQEHCAEVGSHLIQRLKDVQKRHDIIG 398

Query:   403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
             DVRGRG ++G+E V+DR+ KTPAKAET  + ++++
Sbjct:   399 DVRGRGLMVGIELVSDRKDKTPAKAETSVLFEQLR 433

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019544 "arginine catabolic process to glutamate" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

FB|FBgn0037186 CG11241 [Drosophila melanogaster (taxid:7227)]

 Score = 529 (191.3 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
 Identities = 104/204 (50%), Positives = 140/204 (68%)

Query:   236 GEMYAKDVQDLIDFGTS-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294
             G+ Y  ++++   +    G VA   +ESIQGVGG ++   GYL      ++  GGL +AD
Sbjct:   257 GDAYYNELEETFKYSLPRGKVAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFVAD 316

Query:   295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
             EVQ GF RTG HFWGFE+H  VPDIVTMAKGIGNG PL AVVTTPEIA  L++  +FNT+
Sbjct:   317 EVQTGFGRTGEHFWGFESHDYVPDIVTMAKGIGNGFPLAAVVTTPEIAASLSQALHFNTY 376

Query:   355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
             GGNP+ +A G AVL VI++++LQ N+  VG+Y  + L  L+ ++ IIGDVRG+G ++GVE
Sbjct:   377 GGNPMASAVGIAVLDVIEEEQLQRNSLEVGTYFLKGLAELQQRFEIIGDVRGKGLMIGVE 436

Query:   415 FVTDRQLKTP-AKAETLYIMDKMK 437
              V +R+ +TP A    L I +K K
Sbjct:   437 LVGNREKRTPLATPHVLDIWEKCK 460

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ZFIN|ZDB-GENE-050913-100 agxt2 "alanine-glyoxylate aminotransferase 2" [Danio rerio (taxid:7955)]

 Score = 555 (200.4 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
 Identities = 101/194 (52%), Positives = 135/194 (69%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             +MY K+++++ D      +A F +E IQGVGG ++    YL   Y+ +++ GG+CIADEV
Sbjct:   269 DMYIKELKEVFDTTVPSRIAAFFTEPIQGVGGAVQYPKNYLKETYQLVREKGGICIADEV 328

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGG 356
             Q GF RTGSHFWGFE H V+PD+VTMAKGI NGIP+GAVVTT EIA    +  +FNTFGG
Sbjct:   329 QTGFGRTGSHFWGFEGHNVIPDMVTMAKGIANGIPMGAVVTTAEIARSFAKGVHFNTFGG 388

Query:   357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
             NP+  A   +VL  I++DK+Q N+  +G+YL   L  L+DKY IIGDVRG+G  +GVE V
Sbjct:   389 NPLACAIASSVLDTIKEDKMQENSAELGTYLLTELAKLRDKYEIIGDVRGKGLQIGVEMV 448

Query:   417 TDRQLKTPAKAETL 430
              D+  +TP   E +
Sbjct:   449 KDKASRTPLPQEAM 462

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NQJ1 AGXT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 549 (198.3 bits), Expect = 6.1e-95, Sum P(2) = 6.1e-95
 Identities = 100/201 (49%), Positives = 139/201 (69%)

Query:   230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289
             GV  A+ E Y +  +D ++      +AGF++E IQG+ G ++   G+L   Y+ +++ GG
Sbjct:   224 GVCHAN-EQYIEQFKDTLNTSVPKTIAGFIAEPIQGINGAVQYPKGFLKEAYRLVRERGG 282

Query:   290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN 349
             +CIADEVQ GF RTGSHFWGF+ H VVPDI+T+AKGIGNG P+ AVVTT EIA  L +  
Sbjct:   283 VCIADEVQTGFGRTGSHFWGFQTHDVVPDIITLAKGIGNGFPMAAVVTTKEIANSLAQNL 342

Query:   350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
             +FNTFGGNP+    G AVL  I++D LQ N+  VG+Y+   L  L+DK+ I+GDVRG+G 
Sbjct:   343 HFNTFGGNPMACVVGSAVLDAIEEDSLQKNSKDVGTYMLLELAKLRDKFEIVGDVRGKGL 402

Query:   410 LLGVEFVTDRQLKTPAKAETL 430
             ++G+E VTD+  + P  AE +
Sbjct:   403 MIGIEMVTDKDSRHPLPAEEI 423

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

UNIPROTKB|E2QZD7 AGXT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 545 (196.9 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
 Identities = 98/203 (48%), Positives = 142/203 (69%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D ++   +  +AGF +E IQGV G+++   G+L   ++ +++ GGLCIADEV
Sbjct:   263 DQYIEQFKDTLNSSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGLCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFG 355
             Q GF R GSHFWGF+ HG++PDIVTMAKGIGNG P+ AVVTTPEIA  L +   +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHGILPDIVTMAKGIGNGFPMAAVVTTPEIANSLAKSVLHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+ ++   L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPIACAIGSAVLEVIKEENLQENSQEVGTYMLQKFAELRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDRQLKTPAKAETLY-IMDKMK 437
             V D+  + P   E +  I D  K
Sbjct:   443 VKDKMSRQPLPREEVNEIHDNCK 465

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

WB|WBGene00020382 T09B4.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 531 (192.0 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
 Identities = 107/203 (52%), Positives = 139/203 (68%)

Query:   237 EMYAKDVQDLI--DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294
             + Y +   D++  DF  S   A FL ESIQGVGG ++   GYL   Y+S++K GGL IAD
Sbjct:   201 DKYIEQFDDMLLHDFSHSSGPAAFLIESIQGVGGTVQYPHGYLKKSYESVQKRGGLAIAD 260

Query:   295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
             EVQ GF R GSHFWGFE+   +PD+VTMAKGIGNG PLGAVVT+ EIA+   +  YFNT+
Sbjct:   261 EVQTGFGRLGSHFWGFESQDALPDMVTMAKGIGNGFPLGAVVTSKEIADSFNKSLYFNTY 320

Query:   355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
             GGNP+ +  G AVL+VI+++KLQ N+ VVG Y  ++L A+ D    IGDVRG+G ++GVE
Sbjct:   321 GGNPLASVVGKAVLEVIEEEKLQENSAVVGDYFLKQLAAIDD--ATIGDVRGKGLMIGVE 378

Query:   415 FVTDRQLKTPAKAETLYIMDKMK 437
              + D Q K  A A+T  I +  K
Sbjct:   379 LI-DEQGKPLAAAKTAAIFEDTK 400

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|Q17QF0 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 544 (196.6 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 96/193 (49%), Positives = 140/193 (72%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ +++ GG+CIADEV
Sbjct:   263 DQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFG 355
             Q GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTTP+IA+ LT+R  +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+  +L  L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDRQLKTPAKAE 428
             V D++ + P   E
Sbjct:   443 VKDKESRQPLPRE 455

GO:0005739 "mitochondrion" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1MLG7 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 541 (195.5 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
 Identities = 96/193 (49%), Positives = 139/193 (72%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ +++ GG+CIADEV
Sbjct:   263 DQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFG 355
             Q GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTTP+IA+ LT+R  +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+  +L  L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDRQLKTPAKAE 428
             V D++   P   E
Sbjct:   443 VKDKESHQPLPRE 455

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q9BYV1 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 519 (187.8 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
 Identities = 91/184 (49%), Positives = 132/184 (71%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ ++  GG+CIADEV
Sbjct:   263 DQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-RNYFNTFG 355
             Q GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AV+TTPEIA+ L +   +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+  +   L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDR 419
             V D+
Sbjct:   443 VQDK 446

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0016223 "beta-alanine-pyruvate transaminase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA;TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IDA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IDA

GO:0009436 "glyoxylate catabolic process" evidence=IDA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR86	AGT23_ARATH	2, ., 6, ., 1, ., 4, 4	0.7432	0.9865	0.9168	yes	no
P30268	Y2045_BACPE	2, ., 6, ., -, ., -	0.3282	0.8389	0.8426	yes	no
Q94AL9	AGT22_ARATH	2, ., 6, ., 1, ., 4, 4	0.7358	0.9843	0.9224	no	no
Q17QF0	AGT2_BOVIN	2, ., 6, ., 1, ., 4, 0	0.4053	0.9463	0.8229	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.976
4th Layer	2.6.1.44	0.991
4th Layer	2.6.1.40	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	1e-145
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	1e-138
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	1e-132
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-114
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	1e-108
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	1e-102
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	3e-97
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	6e-94
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	5e-92
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	2e-91
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	5e-85
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	4e-77
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	5e-76
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	6e-76
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	8e-76
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	6e-75
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	3e-69
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	1e-68
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	2e-68
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	2e-68
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	5e-68
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	6e-66
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	1e-65
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	1e-63
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	3e-62
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	6e-62
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	2e-61
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	9e-61
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	1e-58
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	3e-58
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	5e-58
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	5e-58
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	6e-58
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	4e-57
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	3e-56
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	9e-56
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	5e-55
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	6e-55
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	8e-55
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	1e-54
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	1e-53
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	2e-53
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	2e-53
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	3e-53
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	5e-53
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	1e-52
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	2e-52
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-52
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	1e-51
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	2e-49
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	3e-48
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	2e-46
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	1e-45
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	2e-45
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	5e-45
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	8e-45
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	2e-43
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	7e-43
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	9e-43
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	6e-42
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	1e-41
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	6e-38
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	1e-37
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	9e-37
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	5e-34
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	2e-33
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	2e-32
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	5e-31
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	2e-29
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	3e-28
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	5e-25
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	1e-24
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	2e-24
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	1e-23
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	1e-22
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	3e-20
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	6e-19
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	5e-18
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	5e-12
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	3e-09
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	4e-09
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	4e-07
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	2e-04

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  422 bits (1086), Expect = e-145
 Identities = 159/393 (40%), Positives = 216/393 (54%), Gaps = 14/393 (3%)

Query: 56  DGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
            GP A E++ +R+  L+ S +  +  PL +V  +  YL+D +G  YLD   GIA +  GH
Sbjct: 14  PGPKALELIERREEALARS-YGRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGH 72

Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGN-LKVVFFTNSGTEANEL 173
            HP VV+++  Q+ ++ H+    L +    + AE L +  PG+ LK VFF NSG EA E 
Sbjct: 73  NHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEA 132

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK---FNVVQTGVHHALNPDPYRG 230
           AI +AR YTG   +I+   A+HG   G +  T         F  +  GV+H   P+PYR 
Sbjct: 133 AIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRC 192

Query: 231 VFGADGEMYAKDVQDLI-----DFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
            FG  GE    D  + I     D       VA  + E IQG GGII    G+L A+ K  
Sbjct: 193 PFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLC 252

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           ++ G L IADEVQ GF RTG   + FE  GV PDIVT+AK +G G+PL AVV   EI + 
Sbjct: 253 REHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDW 311

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                +  TFGGNPV  AA  AVL VI+++ L   A  +G YL++RL  L++K+ +IGDV
Sbjct: 312 PPGG-HGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDV 370

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
           RG G ++GVE V DR  K P       I+ +  
Sbjct: 371 RGLGLMIGVELVKDRDTKEPDAELAAKIVARAF 403

Length = 447

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  421 bits (1085), Expect = e-138
 Identities = 184/397 (46%), Positives = 227/397 (57%), Gaps = 22/397 (5%)

Query: 55  YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG 114
             G    EIL +RK  L P+L   YS P+  V G   +L D  GR YLD F  +  V  G
Sbjct: 580 QSGRDKAEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNVCHV--G 637

Query: 115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA 174
           H HP VV +   Q  R+  +T  YL+ AI  +AE L + +P  L V FF NSG+EAN LA
Sbjct: 638 HAHPRVVAAAARQAARLNTNT-RYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLA 696

Query: 175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-------VHHALNPDP 227
           + +AR +TG  D I L +AYHG    T      S +KFN  + G       V  A  PD 
Sbjct: 697 LRLARAHTGQRDAIVLDHAYHGT---TTELIDLSPYKFN--RKGGKGRPDHVEVAEVPDS 751

Query: 228 YRGVFG----ADGEMYAKDVQDLID-FGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVY 281
           YRG         G  +A+ V + I      G   A F++ESI  V G I L  GYL  VY
Sbjct: 752 YRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVY 811

Query: 282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEI 341
             ++ AGG+CIADEVQ GF R GSH+W FE  GVVPDIVTM K IGNG P+GAVVTT EI
Sbjct: 812 AMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREI 871

Query: 342 AEVLTR-RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
           A+       YFNTFGGNPV  A G AVL +I+ + LQ NA  +G+YL   L  L+D++ I
Sbjct: 872 ADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDI 931

Query: 401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
           IGDVRG G  LG+E VTDR+ K PA A   Y+ +  +
Sbjct: 932 IGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR 968

Length = 1013

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  388 bits (998), Expect = e-132
 Identities = 148/374 (39%), Positives = 203/374 (54%), Gaps = 7/374 (1%)

Query: 67  RKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVN 126
           RK          Y  PL +V  +  YL+D +G RYLD   GI  +  GH HP VV+++  
Sbjct: 6   RKVLWHGYTVRPY--PLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKE 63

Query: 127 QIKRIQHSTVLYLNHAIAD-FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN 185
           Q+ ++ H ++ +  +  A   AE L +  P  L  VFF NSGTEA E A+ +AR YTG  
Sbjct: 64  QLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRK 123

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245
            IIS   AYHG   G +  T    ++             P PYR    A+     + +++
Sbjct: 124 KIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEE 183

Query: 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS 305
            ++      VA  + E IQG GG+I   PGYL A+ +  +K G L IADEVQ GF RTG 
Sbjct: 184 ALEEH-PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK 242

Query: 306 HFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAA 363
            F  FE  GV PDIVT+ KG+G G+PLGAV+   EI +        +  TFGGNP+  AA
Sbjct: 243 MFA-FEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAA 301

Query: 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
             AVL+V++++ L  NA  +G YL+ERL  L +K+ ++GDVRGRG ++G+E V DR  K 
Sbjct: 302 ALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKP 361

Query: 424 PAKAETLYIMDKMK 437
           P K     I+    
Sbjct: 362 PDKELAAKIIKAAL 375

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  356 bits (916), Expect = e-114
 Identities = 173/406 (42%), Positives = 228/406 (56%), Gaps = 32/406 (7%)

Query: 48  FDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGG 107
                PP   P A  +LA+R    +    H Y+ P  +  G   +LFD  GR YLD    
Sbjct: 537 LPCDAPP---PDAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNN 593

Query: 108 IATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS 166
           +  +  GH HP +  +   Q   +  +S   Y   A+A+F+E LA+  P  L  VF  NS
Sbjct: 594 VTVL--GHGHPRLAAAAARQWSLLNTNSRFHY--AAVAEFSERLAALAPDGLDTVFLVNS 649

Query: 167 GTEANELAIMMARLYTGCNDIISLRNAYHG-----NAAGTMGA------TAQSNWKFNVV 215
           G+EAN+LAI +A   +G  D++S+  AYHG     +A  T  A        + +W     
Sbjct: 650 GSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDW----- 704

Query: 216 QTGVHHALNPDPYRGVF-GAD-GEMYAKDV-QDLIDFGTSGH-VAGFLSESIQGVGGIIE 271
              VH   +P+ YRG F GAD    Y +DV   L +   SG  +AGF+ E + G  G I 
Sbjct: 705 ---VHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIA 761

Query: 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIP 331
           L PGYL  VY +++  GG+CIADEVQ G+ R G +FWGFE  GVVPDI+TMAKG+GNG P
Sbjct: 762 LPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHP 821

Query: 332 LGAVVTTPEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER 390
           LGAV+T  EIAE L    Y F++ GG+PV    G AVL V++++KLQ NA  VG +LK R
Sbjct: 822 LGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKAR 881

Query: 391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM 436
           L AL D++ +IG V G G  LGVE V DRQ   PA  ET  I D++
Sbjct: 882 LEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRL 927

Length = 972

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  326 bits (837), Expect = e-108
 Identities = 132/354 (37%), Positives = 195/354 (55%), Gaps = 25/354 (7%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L   Y + P+ +V G+  Y++D+ GR YLD   GIA    GHCHP +V+++  Q +++ H
Sbjct: 17  LMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH 76

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC---NDIISL 190
            + L+ N   A+ AE L    P     VFF NSG EANE A+ +AR YTG    + II+ 
Sbjct: 77  VSNLFYNEPQAELAEKLVELSPF-ADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAF 135

Query: 191 RNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
            N++HG   G + AT Q  ++  F  +  G  H     P+      D E     ++  ID
Sbjct: 136 ENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHV----PF-----NDIE----ALEAAID 182

Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                  A  + E IQG GG+I   P +L A+ +   + G L I DEVQ G  RTG   +
Sbjct: 183 ----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG-KLF 237

Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            +E +GV PDI+T+AK +G G P+GA++ T EIA   T  ++ +TFGGNP+  A   AVL
Sbjct: 238 AYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVL 297

Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           +V+ ++ L  N    G YL +RL  LK +Y ++ +VRGRG ++G+E     + +
Sbjct: 298 EVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRAR 351

Length = 404

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  310 bits (796), Expect = e-102
 Identities = 126/352 (35%), Positives = 190/352 (53%), Gaps = 28/352 (7%)

Query: 72  SPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
              L + Y + P+  V G+   L+D++G+ YLD   GIA    GHCHP +V++I  Q  +
Sbjct: 11  KKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAK 70

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND---- 186
           + H++ LY      + AE L       +  VFF NSG EANE AI +AR Y         
Sbjct: 71  LIHTSNLYYIEPQEELAEKLVEL--SGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKP 128

Query: 187 -IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK--DV 243
            II+  N++HG    T+ AT Q        Q G       +P       +G +Y    D+
Sbjct: 129 EIITAENSFHGRTLATLSATGQPK-----YQEGF------EPL-----VEGFIYVPFNDI 172

Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
           + L     +   A  + E IQG GG+      YL A+ +   + G L I DEVQ G  RT
Sbjct: 173 EALKA-AITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRT 231

Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA 363
           G   + ++ +G+ PDI+T+AKG+G G+P+GAV+   ++A+V T  ++ +TFGGNP+  AA
Sbjct: 232 GK-LFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAA 290

Query: 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             AV+++I+++ L  NA  VG YL+ +L  L +KY  I +VRG G ++G+E 
Sbjct: 291 ALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIEL 342

Length = 396

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  298 bits (765), Expect = 3e-97
 Identities = 156/417 (37%), Positives = 212/417 (50%), Gaps = 26/417 (6%)

Query: 41  FLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRR 100
            +PR P      P   GP A EI+ + + +L+ S    Y  PL +  G+  ++ D +G  
Sbjct: 1   DMPRRPRIVVELP---GPKAREIIERDEKYLAQSTRRWY--PLVIERGEGVWVEDVDGNV 55

Query: 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNL- 158
           YLD   GIA    GH HP VV ++  Q ++  H S   +      + AE L    PG   
Sbjct: 56  YLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFE 115

Query: 159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK----FNV 214
           K VFFTNSGTE+NE AI +AR +TG   II+   A+HG   G++  TA S       F  
Sbjct: 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTA-SKPVQRKGFFP 174

Query: 215 VQTGVHHALNPDPYRGVFGA-DGEMYAKDVQDLIDFGTSGH------VAGFLSESIQGVG 267
           +  GV H   P+PYR  +G  + E     V D I+            VA  + E IQG G
Sbjct: 175 LMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEG 234

Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G +     +   + K   K G L I DEVQ G  RTG   +  E  GV PDI+T+AK I 
Sbjct: 235 GYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFGVEPDIITLAKAIA 293

Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G+PLGAV+   E+   L   ++ NTFGGNPV  AA  A L+ + ++ L  NA  +G YL
Sbjct: 294 GGLPLGAVIGRAELMF-LPPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYL 351

Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM--KGICAL 442
           ++ L  LK+KY  IGDVRG G ++GVE V DR  K P       ++ +   +G+  L
Sbjct: 352 RKELKELKEKYEFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLLLL 406

Length = 441

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  286 bits (734), Expect = 6e-94
 Identities = 135/342 (39%), Positives = 183/342 (53%), Gaps = 14/342 (4%)

Query: 84  NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHA 142
            +   K  +L+D +GRRYLD   GIA V  GHCHP +V ++  Q  ++ H S   +    
Sbjct: 1   FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEP 60

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHG 196
               AE LA   PG L  VFF NSG+EANE AI +AR Y      TG   II+    +HG
Sbjct: 61  ALQLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHG 120

Query: 197 NAAGTMGATAQSNWKFNVVQT--GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
              G +  T  S +K     +  GV+    PD             A     LI      +
Sbjct: 121 RTLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEA---LRLIKAVHDDN 177

Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A  + E IQG GG++   PG+L  + +  KK G L IADEVQ GF RTG   +  E +G
Sbjct: 178 IAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACEHYG 236

Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374
           V PDI+T+AK +  G+PL AV+ T EI +     ++  TFGGNP+  AA  AVL +I+ +
Sbjct: 237 VTPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDE 296

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
            L  NA   G YL++ L AL+DK  +IGDVRG+G ++ +E V
Sbjct: 297 NLLQNAQEKGDYLRKGLLALQDK-PVIGDVRGKGLMIAIEIV 337

Length = 338

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  285 bits (732), Expect = 5e-92
 Identities = 129/383 (33%), Positives = 191/383 (49%), Gaps = 30/383 (7%)

Query: 75  LFHLYS-------KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ 127
           L+H ++       +P  +V  +  YL D +GRRYLD   G+  V  GH  P + ++I  Q
Sbjct: 13  LWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQ 72

Query: 128 IKRIQHSTVLYL-NHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLY---- 181
           + ++ H       +    + AE LA   P G L  VFFT+SG+EA E A+ MA  Y    
Sbjct: 73  LDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRAR 132

Query: 182 --TGCNDIISLRNAYHGNAAGTMGATAQSNWK---FNVVQTGVHHALNPDPYRGVFGADG 236
                   IS RN YHG+  G M        +   ++ +   V H   P  YR  F  +G
Sbjct: 133 GQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192

Query: 237 EM----YAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLC 291
           +      A +++ LI       +A F+ E +  G GG++   PGYL  V +   K G L 
Sbjct: 193 DEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILL 252

Query: 292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNY 350
           IADEV  GF RTG  F   E  G+VPDI+ +AKG+  G +PL AV+T+  I E  +  + 
Sbjct: 253 IADEVATGFGRTGKMF-ACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDA 311

Query: 351 -----FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405
                 +T+ GNP+  AA  A L +++++ L      +G+YL+  L A    + ++GDVR
Sbjct: 312 GAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVR 371

Query: 406 GRGFLLGVEFVTDRQLKTPAKAE 428
           G G +  +E V D+  KTP +A 
Sbjct: 372 GLGLIGAIELVADKATKTPFEAR 394

Length = 449

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  283 bits (726), Expect = 2e-91
 Identities = 140/384 (36%), Positives = 200/384 (52%), Gaps = 15/384 (3%)

Query: 62  EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVV 121
           +++ +    L+P+L       L VV G+  Y +  +G+ YLD   GIA    GH HP VV
Sbjct: 7   DLVERYPQLLAPAL-AKDHPNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVV 65

Query: 122 DSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
            +I  Q  ++ H  + +    +I   AE LA   PG L   FF+NSG EA E A+ +A+ 
Sbjct: 66  QAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKH 125

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFGADG 236
            T    IIS    +HG   G +  T  S  K+      +   V+ A  P   R   G D 
Sbjct: 126 VTKRPYIISFTGCFHGRTLGALSVTT-SKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDP 184

Query: 237 EMYA----KDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC 291
           E+      +D++ L     +   VA  + E + G GG I     +L  + +   + G L 
Sbjct: 185 EVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILL 244

Query: 292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF 351
           I DEVQ GF RTG  F   +  GVVPDI+T+AKGI +G+PL AVV + E+ E     ++ 
Sbjct: 245 IFDEVQTGFGRTGEWFAA-QTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHG 303

Query: 352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411
            TFGGNPV  AA  A L+VI+++KL +NA+ +G+Y  ERL  LK+K+ +IGDVRG G ++
Sbjct: 304 TTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMI 363

Query: 412 GVEFVTDRQLKTPAKAETLYIMDK 435
           G+E V       P       I+DK
Sbjct: 364 GIEIV--DPDGEPDGDAVEKILDK 385

Length = 433

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  264 bits (678), Expect = 5e-85
 Identities = 128/348 (36%), Positives = 186/348 (53%), Gaps = 28/348 (8%)

Query: 78  LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137
               P+ +V GK  Y++D NG+ YLD   GIA    GH HP +V+++  Q++++ H + L
Sbjct: 6   YGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNL 65

Query: 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----IISLRN 192
           Y      + AE L          VFF NSG EANE A+ +AR YTG        II+  N
Sbjct: 66  YYTEPQEELAEKLVEHS--GADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFEN 123

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
           ++HG   G + AT Q  ++  F  +  G  +A    PY  +         + ++  ID  
Sbjct: 124 SFHGRTMGALSATGQPKYQKGFEPLVPGFSYA----PYNDI---------ESLKKAID-- 168

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
                A  + E IQG GG+   +  +L A+ +  K    L I DEVQ G  RTG  F+ +
Sbjct: 169 --DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAY 225

Query: 311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV 370
           E +G+ PDI+T+AKG+G G+P+GA +   E+AE  T  ++ +TFGGNP+  AA  AVL+V
Sbjct: 226 EHYGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEV 285

Query: 371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           I+K++L  N    G Y KERL  L   Y    +VRG+G +LG+E    
Sbjct: 286 IEKERLLENVKEKGDYFKERLEELGKNY-PNKEVRGKGLMLGIELEAP 332

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  245 bits (627), Expect = 4e-77
 Identities = 126/340 (37%), Positives = 173/340 (50%), Gaps = 32/340 (9%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +V G+   ++D +G+ YLD  GGIA    GH HP VV+++  Q+  + H + L+   
Sbjct: 26  PLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE 85

Query: 142 AIADFAEALASKM--PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
                AE L   +  P   + VFF NSG EANE A  +ARL TG   I++    +HG   
Sbjct: 86  PQIALAERLVELLGAPEGGR-VFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGR-- 141

Query: 200 GTMGA---TAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
            TMGA   T Q   +  F  +  GV H     PY      D +  A  V D         
Sbjct: 142 -TMGALALTGQPAKRAPFEPLPGGVEHV----PY-----GDVDALAAAVDD--------D 183

Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
            A    E IQG  G++    GYL A  +   + G L + DEVQ G  RTG  ++  +  G
Sbjct: 184 TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDG 242

Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374
           V PD+VT+AKG+G G+P+GA +     A++LT   + +TFGGNPV  AA  AVL  I  +
Sbjct: 243 VTPDVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASE 302

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
            L  NA  +G  L+  + AL     ++  VRGRG LLG+ 
Sbjct: 303 GLLENAERLGEQLRAGIEALGHP--LVDHVRGRGLLLGIV 340

Length = 398

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  243 bits (623), Expect = 5e-76
 Identities = 132/401 (32%), Positives = 194/401 (48%), Gaps = 18/401 (4%)

Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
               EI+ +    +SP+   +   PL  V  +   ++D  G  Y+D     A    GH +
Sbjct: 1   MKPLEIIERYSKVISPAN-RVTYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNN 59

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176
           P VV +I  Q  ++ H T +Y         AE L    PG+   V F  SG++AN+ AI 
Sbjct: 60  PRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIK 119

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-----TGVHHALNPDPYRGV 231
            AR YT    I+S   +Y+G+  G M  T      F V       + VH+   PD YR  
Sbjct: 120 FARAYTKRRKILSYLRSYYGSTYGAMSLTGLD---FPVRALVGELSDVHYIPYPDCYRCP 176

Query: 232 FGADGEMYAKDVQDLID--FGTSGH---VAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
           FG +      +  + I   F    +   VA   +E IQG  G+I     Y   + K + +
Sbjct: 177 FGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDE 236

Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLT 346
            G L + DEVQ+G  RTG  F   E  GV PDI+T+ K +G G+P+ A +   EI + L 
Sbjct: 237 HGILLVVDEVQSGLGRTGKWF-AIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLP 295

Query: 347 RRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG 406
              +  T  GNPV +AA  AV++ I++  L   A  +G+Y K+RL  +K K+ +IGDVRG
Sbjct: 296 PLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRG 355

Query: 407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKM--KGICALFFS 445
            G ++GV+ V DR+ K  A  E   ++ +    G+   FFS
Sbjct: 356 IGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS 396

Length = 443

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  242 bits (619), Expect = 6e-76
 Identities = 130/359 (36%), Positives = 181/359 (50%), Gaps = 34/359 (9%)

Query: 72  SPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
              L  +Y++  L    G+  +L DE+G RYLD   GIA    GH HP++V+++  Q ++
Sbjct: 3   ISPLLPVYNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEK 62

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-TGC--- 184
           + H + LY    I +  E LA ++  N     VFFTNSG EA E AI  AR Y  G    
Sbjct: 63  LWHVSNLY---RIPE-QERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHP 118

Query: 185 --NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP--DPYRGVFGADGEMYA 240
               II+   A+HG    T+ A  Q   K+            P    +  V   D E   
Sbjct: 119 ERYRIITFEGAFHGRTLATIAAGGQE--KY-------LEGFGPLVPGFDQVPFGDIEA-- 167

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
             ++  I   T    A  L E IQG GGI      +L  + +   + G L I DEVQ G 
Sbjct: 168 --LKAAITPNT----AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGM 221

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTG   +  E  GV PDI+ +AKGIG G PLGA + T E A+ +T   + +T+GGNP+ 
Sbjct: 222 GRTGK-LFAHEWAGVTPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLA 280

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTD 418
            A G+AVL VI      +N   +G YLK++L  L D++  +I +VRG+G LLG++ V  
Sbjct: 281 MAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVP 339

Length = 389

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score =  243 bits (622), Expect = 8e-76
 Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 16/364 (4%)

Query: 76  FHLYS-----KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
           FH +S      P+ +   +  Y++D  GRRYLD    +     GH HP VV +I  Q  R
Sbjct: 25  FHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAAR 84

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL 190
           +      + N A ++ A  +A + PG+L  VFFTN G +ANE A+ MARL+TG   ++S 
Sbjct: 85  LCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSA 144

Query: 191 RNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHALNPDPYRGVFGA-----DGEMYAKDVQ 244
             +YHG     +  T       N     GV H   P  YR  F A     + E     ++
Sbjct: 145 YRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLE 204

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
            +I+      +A  L ES+ G  GI+   PGYL  V +   + G + IADEV AGF RTG
Sbjct: 205 RVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG 264

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCT 361
             F   E  GVVPD++T AKG+ +G +PLG V  +  IA     R Y    T+ G+P+  
Sbjct: 265 KWF-AIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLAC 323

Query: 362 AAGHAVLKVIQKDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           AA  A +  ++++ +  NA  +G+  L   L  L +++  +G+VRG G    +E V DR+
Sbjct: 324 AAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRE 383

Query: 421 LKTP 424
            + P
Sbjct: 384 TREP 387

Length = 451

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  239 bits (611), Expect = 6e-75
 Identities = 127/345 (36%), Positives = 182/345 (52%), Gaps = 25/345 (7%)

Query: 74  SLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVC-CGHCHPYVVDSIVNQIKRI 131
            LF  Y + P+++V GK   + D NG+ YLD   GIA VC  GHCHP V  ++  Q+  I
Sbjct: 3   HLFPTYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIA-VCNLGHCHPTVTKAVQEQLDDI 61

Query: 132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191
            H + L+ N    + A  LA    G+L  VFF NSG EANE A+ +AR +TG + I++  
Sbjct: 62  WHVSNLFTNSLQEEVASLLAENSAGDL--VFFCNSGAEANEAALKLARKHTGKSKIVTFE 119

Query: 192 NAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
            ++HG   GTM AT Q   K  F  +  G  H     P+  +      M           
Sbjct: 120 QSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHV----PFNDIKALKEVM----------- 164

Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
             +  VA  + E +QG GG+I   P +L  V    KK G L I DEVQ G  RTG+ F  
Sbjct: 165 --NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-A 221

Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369
           +E  G+ PDIVT+AKG+GNGIP+GA++   E+       ++ +TFGGNP+  AA   VL+
Sbjct: 222 YEQFGLDPDIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQ 281

Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
           VI++          G Y  ++L    +    + ++RG+G ++G+E
Sbjct: 282 VIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIE 326

Length = 377

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  226 bits (579), Expect = 3e-69
 Identities = 123/388 (31%), Positives = 195/388 (50%), Gaps = 32/388 (8%)

Query: 65  AKRKTFLSPSLFHLYSK-----PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY 119
           A ++  L P  +H +S       L +V+ +  Y+ D +GRRYLD  GG+  V  G+    
Sbjct: 14  ADKRHLLHP--WHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREE 71

Query: 120 VVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           + D+I +Q +R+ + T      N   A+ A  LA   PG+L  VF T  G+ A + A+  
Sbjct: 72  MADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRF 131

Query: 178 ARLYTGC------NDIISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYR 229
              Y           II+  +AYHG+   T      A    +F+     VHH  +P+PYR
Sbjct: 132 VHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYR 191

Query: 230 GVFGADGEMY----AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK 285
              G     +      + +D I    + ++A F++E I G GG+I   PGY   + +  +
Sbjct: 192 RPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR 251

Query: 286 KAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAE 343
           +   L I+DEV  GF R G HF+  EA  G+ PDI+T AKG+ +G  PLGAV+ +  + +
Sbjct: 252 RYDILYISDEVVTGFGRLG-HFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLD 310

Query: 344 VLTRRN----YFN---TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD 396
           V++  N     F    T+ G+PV  AA    +++++++ L  +   VG Y +ERL +L++
Sbjct: 311 VISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRE 370

Query: 397 KYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
              ++GDVRG   +  VE V D+  K  
Sbjct: 371 -LPLVGDVRGDHLMACVECVADKGSKAL 397

Length = 466

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  224 bits (573), Expect = 1e-68
 Identities = 119/360 (33%), Positives = 179/360 (49%), Gaps = 12/360 (3%)

Query: 85  VVD-GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA- 142
           V+D G    L D +G+ Y+D     ++   GH  P VV++I  Q  +  H T  Y+ H  
Sbjct: 27  VIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEP 86

Query: 143 IADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
           +   A+ L    PG+  K V F  SG++AN+  I  AR YTG   IIS  NAYHG+  G+
Sbjct: 87  LVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGS 146

Query: 202 MGATAQS---NWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSG 253
           +  +  S     K+  +  G  H   PD YRG++         E  A   +    +  + 
Sbjct: 147 LSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPAD 206

Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
            VA  + E+IQG GG++E  PGY  A+YK  ++ G L   D++Q G  RTG  +      
Sbjct: 207 EVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHF 265

Query: 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK 373
            + PD+++  K +  G+P+ A+V   EI E L    +  T G NPV  AA  A + +I+ 
Sbjct: 266 NITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED 325

Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
           + L   +   G Y ++R      KY  +GDVRG G  +G++ V+D++LKT      L I 
Sbjct: 326 ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKIC 385

Length = 445

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  224 bits (573), Expect = 2e-68
 Identities = 119/342 (34%), Positives = 173/342 (50%), Gaps = 23/342 (6%)

Query: 87  DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLNHAIAD 145
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ +   HS  L L+   A 
Sbjct: 70  AGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAM 128

Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---GCNDIISLRNAYHGNAAGTM 202
            A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G +
Sbjct: 129 LAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGAL 188

Query: 203 GATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260
            ATA+S ++  F  +  G  H     P+      + E     + +    G    VA  + 
Sbjct: 189 SATAKSTFRKPFMPLLPGFRHV----PF-----GNIEAMRTALSECKKTGDD--VAAVIL 237

Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320
           E IQG GG+I    GYL AV K   + G L I DEVQ G  RTG   +  E   V PDI+
Sbjct: 238 EPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQPDIL 296

Query: 321 TMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQKDKLQ 377
            +AK +G G+ P+GA + T E+  VL    + +  TFGGNP+  AA  A + V+ +  L 
Sbjct: 297 CLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLP 356

Query: 378 NNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTD 418
             A   G YL +    L  +Y  ++ + RG+G L+ +EFV +
Sbjct: 357 AQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN 398

Length = 459

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  223 bits (571), Expect = 2e-68
 Identities = 120/372 (32%), Positives = 188/372 (50%), Gaps = 31/372 (8%)

Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL 139
            P+ +V G   Y++D +G++ LD  GG+  V  GH    V ++IV Q+  ++ +ST    
Sbjct: 24  PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGT 83

Query: 140 NHAIADFAEALASKM-----PGNLKVVFFTNSGTEANELAIMMARLY---TGCND---II 188
            H     A  L+ ++     P  ++ VFF++ G+++ E A+ +AR Y    G  +    I
Sbjct: 84  TH---PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFI 140

Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFGAD-----GEMYAK 241
           SL+  YHG   G       + ++ N   +  G  H   P  YR  F          + A+
Sbjct: 141 SLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICAR 200

Query: 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
            ++  I F     +A F++E +QG GG+I     + P V +   + G L IADEV  GF 
Sbjct: 201 LLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFG 260

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF-------NT 353
           RTGS F G    GV PDI+ +AKGI +G +PLGA +    IA+       F        T
Sbjct: 261 RTGSWF-GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYT 319

Query: 354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV 413
           + G+PV  AA  A L ++ ++ L  NA   G+YL E L  LK+++ ++GDVRG+G +L +
Sbjct: 320 YSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLAL 379

Query: 414 EFVTDRQLKTPA 425
           + V D+  + P 
Sbjct: 380 DLVADKATREPI 391

Length = 449

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score =  223 bits (570), Expect = 5e-68
 Identities = 123/370 (33%), Positives = 189/370 (51%), Gaps = 25/370 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
            + V   +  ++ D  G RYLD   G+  V  G+    + ++   Q+K + +   L  +H
Sbjct: 30  TMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSY-FPLTQSH 88

Query: 142 --AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNA 193
             AI   AE L ++  G   V+FF+NSG+EANE A  +AR Y            IS   A
Sbjct: 89  EPAIK-LAEKL-NEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRA 146

Query: 194 YHGNAAGTMGATAQSN--WKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLI 247
           YHGN+ G + AT Q+   +K+  +  G  H   PD YR       ++Y     K++  ++
Sbjct: 147 YHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVM 206

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
            +  S  +A  + E I   GG++     Y+ AV +  +K G L I+DEV  GF RTG  F
Sbjct: 207 TWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF 266

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN---YF---NTFGGNPVC 360
            GF  +GV PDI+TMAKGI +  +PL A     EI E    +    +F   NTFGGNP  
Sbjct: 267 -GFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAA 325

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     L++++ + L   +  +G  L E+L     ++ ++GD+RG+G L+G+E V D++
Sbjct: 326 CALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKE 385

Query: 421 LKTPAKAETL 430
            K PA  + +
Sbjct: 386 TKEPADNDKV 395

Length = 451

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  217 bits (554), Expect = 6e-66
 Identities = 124/345 (35%), Positives = 176/345 (51%), Gaps = 25/345 (7%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS---TVLYLNHAIADFAEA 149
           ++D+ GRRY+D   GIA V  GH HP V+ ++  Q+ R  H+    V Y N+     AE 
Sbjct: 34  IWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVR--LAER 91

Query: 150 LASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 207
           L + +PG+   K +F T +G EA E A+ +AR  TG + +I+    +HG     M  T +
Sbjct: 92  LNALVPGDFAKKTIFVT-TGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGK 150

Query: 208 -SNWK--FNVVQTGVHHALNPDPYRGV-----FGADGEMYAKDVQDLIDFGTSGHVAGFL 259
              +K  F  +   V+H   P    GV       A  +++  DV           VA  +
Sbjct: 151 VVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD-------PQRVAAII 203

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E +QG GG       ++ A+ +   + G L IADEVQ GFARTG  F   E H V  D+
Sbjct: 204 IEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-AMEHHEVAADL 262

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
            TMAKG+  G PL AV    EI +         T+GGNP+  AA HAVL VI+++ L   
Sbjct: 263 TTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCER 322

Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
           A+ +G+ LK+RL +L++    I D+RG GF+  VEF  D     P
Sbjct: 323 ANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEF-NDADSGLP 366

Length = 425

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  216 bits (552), Expect = 1e-65
 Identities = 134/385 (34%), Positives = 192/385 (49%), Gaps = 20/385 (5%)

Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP +  +  +R   ++  +    + P+ V       + D +G R +D   GIA    G+ 
Sbjct: 16  GPKSQALAERRAAAVAAGVGS--TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNS 73

Query: 117 HPYVVDSIVNQIKRIQHSTVL---YLNHAIADFAEALASKMPGN--LKVVFFTNSGTEAN 171
            P VV+++  Q+ R  H+  +   Y        AE L    PG+   +   F NSG EA 
Sbjct: 74  APRVVEAVREQVARFTHTCFMVTPY--EGYVAVAEQLNRLTPGDHEKRSALF-NSGAEAV 130

Query: 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WK--FNVVQTGVHHALNPDPY 228
           E A+ +AR YTG   ++   +AYHG    TM  TA+S  +K  F      V+ A    PY
Sbjct: 131 ENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPY 190

Query: 229 RGVFGA--DGEMYAKDVQDLID--FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
           R   G   DGE  A     +I+   G   ++A  + E IQG GG I  A G+LPA+ +  
Sbjct: 191 RDPKGLATDGEEAAARAITVIEKQVGA-DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWC 249

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           ++ G + IADEVQ GFARTG+ F   E  G+VPD++T AKGI  G+PL AV    EI + 
Sbjct: 250 RENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDA 308

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T+GGNPV  AA  A ++ I++D L   A  + + + +RL AL  +   IGDV
Sbjct: 309 PHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDV 368

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAET 429
           RGRG ++ +E V       P    T
Sbjct: 369 RGRGAMIAIELVKPGT-TEPDAELT 392

Length = 443

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  210 bits (537), Expect = 1e-63
 Identities = 121/358 (33%), Positives = 170/358 (47%), Gaps = 13/358 (3%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+     +   L D +G R +D   GIA +  GH HP VVD++  Q+    H+  +   +
Sbjct: 16  PVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPY 75

Query: 142 -AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
                 AE L    PG+   K VFF NSG EA E A+ +AR YTG   +++  + +HG  
Sbjct: 76  EGYVALAEKLNRIAPGSGPKKSVFF-NSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134

Query: 199 AGTMGATAQS---NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG-- 253
             TM  TA+       F      V+ A  P PYR            ++            
Sbjct: 135 NMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVG 194

Query: 254 --HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
             +VA  + E +QG GG I  A G++PA+    ++ G + IADEVQ GFARTG+ F   E
Sbjct: 195 ANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMF-ACE 253

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
             G  PD++T AK + +G+PL  V    EI +         T+ GNP+  AA  AVL +I
Sbjct: 254 HEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAII 313

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
           + + L   A  +G  + +RLT LK     IGDVRG G ++ VE V D     P     
Sbjct: 314 ESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV-DPGTTEPDAGLA 370

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  206 bits (528), Expect = 3e-62
 Identities = 114/364 (31%), Positives = 173/364 (47%), Gaps = 21/364 (5%)

Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
            PL +   +  YL+DE+GR Y+D          GH HP +  +I  Q+ +++H     L 
Sbjct: 13  PPLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEHVMFGGLT 72

Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNA 193
           H  A + AE L    P  L+ VFF++SG+ A E+A+ MA  Y       G    ++ RN 
Sbjct: 73  HEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKTRFLAFRNG 132

Query: 194 YHGNAAGTMGATAQS--NWKFNVVQTGVHHALNPDPYRGVFGADGEM-YAKDVQDLIDFG 250
           YHG+  G M        +  F  +   V     P  YR     D E      ++ L++  
Sbjct: 133 YHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDPDDCEAECLAALEALLEE- 191

Query: 251 TSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
            +  +A F+ E + QG GG+    P YL  + +   + G L IADE+  GF RTG  F  
Sbjct: 192 HADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKLF-A 250

Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN--TFGGNPVCTA 362
            E  GV PDI+ ++KG+  G +PL A +TT EI E        + + +  T+ GNP+  A
Sbjct: 251 CEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACA 310

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           A  A L +++++        + + L+  L  L+D  G + DVR  G +  VE V D +  
Sbjct: 311 AALASLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPG-VADVRVLGAIGAVELVRDVEPY 369

Query: 423 TPAK 426
             AK
Sbjct: 370 IGAK 373

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score =  207 bits (528), Expect = 6e-62
 Identities = 127/374 (33%), Positives = 179/374 (47%), Gaps = 33/374 (8%)

Query: 77  HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV 136
              +     V G+  YL D  G+RYLDA GG A  C GH HP V+ +I  QI R+ ++  
Sbjct: 8   SPRATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHT 67

Query: 137 LYLNHAIAD-FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIIS 189
            +     A+  A+ L +  P  L+ V+F + G+EA E A+ +AR Y            I+
Sbjct: 68  SFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIA 127

Query: 190 LRNAYHGNAAGTMGATAQSN--WK---FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244
            R +YHGN   T+GA A     W+   F  +    HH      YR      GE      Q
Sbjct: 128 RRQSYHGN---TLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRE--QRAGESDEAYGQ 182

Query: 245 DLID--------FGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
            L D         G    VA F++E++ G   G +   PGY   + +   + G L I DE
Sbjct: 183 RLADELEAKILELG-PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDE 241

Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYF--- 351
           V  G  RTG   +  E  GV PD+VT+AKG+G G  P+GAV+ +  I + +   + F   
Sbjct: 242 VMCGMGRTG-TLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQH 300

Query: 352 -NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
            +T+ G+    AA  AV +VI +D L  N    G  L+ RL     ++  +GD+RGRG  
Sbjct: 301 GHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLF 360

Query: 411 LGVEFVTDRQLKTP 424
           +GVE V DR  K P
Sbjct: 361 VGVELVADRATKAP 374

Length = 443

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score =  206 bits (525), Expect = 2e-61
 Identities = 120/367 (32%), Positives = 178/367 (48%), Gaps = 36/367 (9%)

Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
           +  GK  YL+D+NG +Y D   G  T   GH    + D+I  Q + +   + +Y +   +
Sbjct: 17  ISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEV---SFVYRSQFTS 73

Query: 145 DFAEALASKM----PGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAY 194
           + AE LA K+    PG+L   FF NSG+EANE A+ +A  +       G + I+S   +Y
Sbjct: 74  EPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSY 133

Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALN-------PDPYRGVFGADGEM----YAKDV 243
           HG    TMGA + S     + +      L        P  YR              A ++
Sbjct: 134 HGI---TMGALSMSG--HPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATEL 188

Query: 244 QDLIDFGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           +  I+   + H+A F++E I G  G  +    GY   + +       L IADEV  G  R
Sbjct: 189 ETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGR 248

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF----NTFGGN 357
           TG+ F   E  GV PDI+T+ KG+G G  P+ A V +  + E + R +      +T   N
Sbjct: 249 TGAMF-AMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSAN 307

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
           P+  A   AVL+ ++K  L   A   G YL + L  ++ +  IIGDVRG+G L+GVEFV 
Sbjct: 308 PLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVA 367

Query: 418 DRQLKTP 424
           D++ K P
Sbjct: 368 DKKTKQP 374

Length = 447

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score =  204 bits (520), Expect = 9e-61
 Identities = 127/388 (32%), Positives = 191/388 (49%), Gaps = 17/388 (4%)

Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP A  +L +R+  +   +      P          + D +G +Y+D  G I T+  GH 
Sbjct: 14  GPKAASLLERRQNIVPKGV--SNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHS 71

Query: 117 HPYVVDSIVNQIKRIQH---STVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANE 172
           HP V +++  Q+ +  H   + ++Y      + AE LA+  PG+  K V F NSG EA E
Sbjct: 72  HPKVKEALHKQVDQYIHTGFNVMMY--EPYIELAEKLAALAPGSFDKKVLFLNSGAEAVE 129

Query: 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN---WKFNVVQTGVHHALNPDPYR 229
            A+ +AR YT    IIS    +HG    TM  T++     + F      V+ A  P  YR
Sbjct: 130 NAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYR 189

Query: 230 GVFGADGEMYAKDV-QDLIDFGTSG----HVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
              G   E Y   + ++  +F  S      +A  + E +QG GG I  +  ++  V    
Sbjct: 190 RPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNIC 249

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
            + G L +ADE+Q GFARTG +F   E   VVPD++T++K +G G+P+  V+   EI + 
Sbjct: 250 SEHGILFVADEIQTGFARTGKYF-AIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDE 308

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T+ G+P+  AA  AVL +I+K+ L + A  +G  +  R   +K+KY  IGDV
Sbjct: 309 SAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDV 368

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYI 432
           RG G +   E V DR+ K P K  T  I
Sbjct: 369 RGLGAMCAFELVQDRKTKEPDKTLTANI 396

Length = 451

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  197 bits (502), Expect = 1e-58
 Identities = 105/352 (29%), Positives = 163/352 (46%), Gaps = 33/352 (9%)

Query: 77  HLYSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           H Y  PL VV   GK  +++D  G++Y D     + V  GHCHP ++ +++NQ +++  +
Sbjct: 8   HNYH-PLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLT 66

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY----TGCND---- 186
           +  + N  +    + +   + G  KV    NSG EA E A+  AR +     G  +    
Sbjct: 67  SRAFYNDVLGLAEKYITD-LFGYDKV-LPMNSGAEAGETALKFARKWGYEVKGIPENQAK 124

Query: 187 IISLRNAYHGNAAGTMGATAQSNW--KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244
           II     + G   G   A+        F     G         Y      D E   K +Q
Sbjct: 125 IIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELV----DYN-----DVEALEKLLQ 175

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
           D        +VA F+ E IQG  G+I    GYL  VY+  KK   L I DE+Q G  RTG
Sbjct: 176 D-------PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG 228

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA 363
                 +  GV PDIV + K +  G+ P+ AV+   ++  V+    + +T+GGNP+  A 
Sbjct: 229 -KLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAV 287

Query: 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
               L+V++++KL  NA  +G   ++ L  L  K   + ++RG+G L  + F
Sbjct: 288 AVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVF 339

Length = 400

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  196 bits (499), Expect = 3e-58
 Identities = 107/349 (30%), Positives = 166/349 (47%), Gaps = 28/349 (8%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P   V G+   ++D+ G+ Y+D  GGIA    GH HP +V +++ Q  ++ H    Y N 
Sbjct: 18  PFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNE 77

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYH 195
            +   A+ L      +   VFF NSG EANE A+ +AR Y         ++I++ +N++H
Sbjct: 78  PVLRLAKKLVDATFADK--VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFH 135

Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           G    T+    Q  +   F  +  G+ HA    PY  +  A         + LI   T  
Sbjct: 136 GRTLFTVSVGGQPKYSQGFAPLPGGIKHA----PYNDLAAA---------KALISDKT-- 180

Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
                + E IQG GG++   P +L  + +   +   L I DEVQ G  RTG   + +  +
Sbjct: 181 --CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHY 237

Query: 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK 373
           GV PDI+T AK +G G P+GA++TT EIA  L    +  T+GGNP+  A    VL ++  
Sbjct: 238 GVTPDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNT 297

Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
            +L            + L  +  +Y +  ++RG+G L+G       Q K
Sbjct: 298 PELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGK 346

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  197 bits (502), Expect = 5e-58
 Identities = 110/360 (30%), Positives = 174/360 (48%), Gaps = 36/360 (10%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI---------QHSTVLYLNHA 142
           YL+D  G + LD   G+  V  G+    + D+   Q++ +          H   + L   
Sbjct: 43  YLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIEL--- 99

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHG 196
               A  LA   P     VFFTNSG+EAN+  + M R Y           IIS +N YHG
Sbjct: 100 ----AAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHG 155

Query: 197 N--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDFG 250
           +  A  ++G     + + ++   G+ H   P  +        E +    A+ ++  I   
Sbjct: 156 STVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL 215

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
            + +VA F+ E IQG GG+I     Y P + +  +K   L +ADEV  GF RTG  ++G 
Sbjct: 216 GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG-EWFGS 274

Query: 311 EAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN-YFN---TFGGNPVCTAAGH 365
           +  G+ PD++T+AKG+ +G IP+GAV     +AEVL      FN   T+ G+PV  A   
Sbjct: 275 QHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVAL 334

Query: 366 AVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
           A L++++ + +        G YL++RL  L D + ++G+VRG G +  +E V D+  +  
Sbjct: 335 ANLRILRDEGIVERVRDDTGPYLQKRLRELAD-HPLVGEVRGVGLVGAIELVKDKATRER 393

Length = 456

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  195 bits (498), Expect = 5e-58
 Identities = 107/339 (31%), Positives = 163/339 (48%), Gaps = 32/339 (9%)

Query: 86  VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD 145
           V G+   ++D+ G+ Y+D  GGIA    GHCHP +V ++  Q +++ H + ++ N     
Sbjct: 27  VRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEP--- 83

Query: 146 FAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGN 197
            A  LA K+      + VFF NSG EANE A  +AR Y          +II+  N++HG 
Sbjct: 84  -ALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGR 142

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255
              T+    Q  +   F      + H     P+  +           V+ +ID     H 
Sbjct: 143 TLFTVSVGGQPKYSDGFGPKPADITHV----PFNDL---------AAVKAVID----DHT 185

Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV 315
              + E IQG GG+I   P +L  + +   +   L I DEVQ G  RTG   + +  +GV
Sbjct: 186 CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYMHYGV 244

Query: 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK 375
            PDI+T AK +G G P+GA++TT EIA       + +T+GGNP+  A   AV  +I   +
Sbjct: 245 TPDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPE 304

Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
           +            + L  +  KYG+  ++RG G L+G E
Sbjct: 305 VLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAE 343

Length = 403

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score =  197 bits (502), Expect = 6e-58
 Identities = 113/371 (30%), Positives = 183/371 (49%), Gaps = 29/371 (7%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL 139
           PL +  G+  Y++D+ G+RY++   G+ +V  G     +V++   Q+K++   H+     
Sbjct: 31  PLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKS 90

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNA 193
           +  + D AE L +  P  +  VFFTNSG+EAN+  + +   Y           IIS +  
Sbjct: 91  HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRG 150

Query: 194 YHGN--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQ 244
           YHG   A+ ++     ++  F++    + H   P  YR  FG  GE         A +++
Sbjct: 151 YHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYR--FGLPGESEEAFATRLANELE 208

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
            LI       +A F+ E + G GG+I     Y   +   ++K   L +ADEV  GF RTG
Sbjct: 209 ALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG 268

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNY-FNTFG------G 356
           + F G E  G+ PDI+ M+K + +   PL AV+   ++ + +   +    TFG      G
Sbjct: 269 NMF-GCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASG 327

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
           +PV  A     L +I++  L  NA   G+ L+ RL AL D + ++G+VRG G +  VE V
Sbjct: 328 HPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALAD-HPLVGEVRGVGLIAAVELV 386

Query: 417 TDRQLKTPAKA 427
            D+  KTP + 
Sbjct: 387 ADKATKTPFEP 397

Length = 460

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  194 bits (495), Expect = 4e-57
 Identities = 140/401 (34%), Positives = 199/401 (49%), Gaps = 26/401 (6%)

Query: 54  PYDGPSADEILAKRKTFLS-----PSLFHLYSKPLNVVDGKMQ--YLFDENGRRYLDAFG 106
             D   A    A  +T+L+      S    Y + L +   K Q  ++ D  G +YLD   
Sbjct: 6   RIDLLGAQATNATNETYLARQAEFESNVRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLA 65

Query: 107 GIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD-FAEALASKMPGNLK--VVFF 163
           G  T+  GH HP V+ SI + +        L L   + D F+E L S +PG  K   + F
Sbjct: 66  GAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQF 125

Query: 164 TN-SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT---GV 219
           T  SG +A E AI +A+ YTG +++IS    YHG   G +  T   + K N V     GV
Sbjct: 126 TGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPK-NAVNGLMPGV 184

Query: 220 HHALNPDPYRGVFGADGEMYAKDV----QDLIDFGTSGHV--AGFLSESIQGVGGIIELA 273
                P  YR   G  GE   K +    ++ I+   SG    A  + E+IQG GG+    
Sbjct: 185 QFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAP 244

Query: 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLG 333
             +L  + +  +K G L I DEVQAGFARTG  F  FE  G+ PDI+ M+K +G G+PL 
Sbjct: 245 VEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF-AFEHAGIEPDIIVMSKAVGGGLPL- 302

Query: 334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA 393
           AV+   +  +      +  TF GN +  A G   LK+++++ L  NA   G +LK +L  
Sbjct: 303 AVLGIKKEFDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAE 362

Query: 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD 434
           L+ +Y  IG+VRGRG ++G+E V +RQ   PA A   Y  D
Sbjct: 363 LQKRYPCIGNVRGRGLMIGIEIVDERQ---PADAMGSYPAD 400

Length = 459

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score =  190 bits (485), Expect = 3e-56
 Identities = 121/370 (32%), Positives = 179/370 (48%), Gaps = 40/370 (10%)

Query: 74  SLFHLYSKPLNV-VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
           SL ++ ++P  V   GK  +L+D NG+RYLD   G A  C GHC+P +V+++  Q +++ 
Sbjct: 10  SLMYITNRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLI 69

Query: 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDI 187
           + +  + N  +A  A  L          VFF NSG EANE AI +AR +      G  +I
Sbjct: 70  NPSPAFYNEPMAKLAGLLTQH--SCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEI 127

Query: 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK------ 241
           I+  +++HG    TM A+ +  W               D    +F      + K      
Sbjct: 128 ITFDHSFHGRTLATMSASGKPGW---------------DT---IFAPQVPGFPKAELNDI 169

Query: 242 -DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
             V+ LI   T   VA  L E +QG GG+I     ++  +    K+ G L I DEVQ G 
Sbjct: 170 ASVEKLITDKT---VAVML-EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGC 225

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTG+ F  +E  G+ PDI+T+ KGIG G+PL A++   E+A V    +   T+ GNP+ 
Sbjct: 226 GRTGTLF-AYELSGIEPDIMTLGKGIGGGVPLAALLAKAEVA-VFEAGDQGGTYNGNPLM 283

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TA G AV+  +            G YLKE+L  L ++ G+ G  RG G L  +    D  
Sbjct: 284 TAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEG-ERGEGLLRALLLGKDIG 342

Query: 421 LKTPAKAETL 430
            +   KA  +
Sbjct: 343 PQIVEKARDM 352

Length = 395

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  188 bits (480), Expect = 9e-56
 Identities = 122/365 (33%), Positives = 184/365 (50%), Gaps = 30/365 (8%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           LF  Y +  +  V  +  YL D +G++YLD   GI     G  HP V  ++  Q   I H
Sbjct: 4   LFQNYKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWH 62

Query: 134 STVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRN 192
           S  LYLN       E +A K+ G+   + FF NSG EANE AI +AR  TG  +II+ +N
Sbjct: 63  SPNLYLN----SLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQN 118

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
           ++HG   G+M AT Q   K  F        +A+  D                V+ L    
Sbjct: 119 SFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFND-------------LNSVKAL---- 161

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
            + + A  + E +QG  G++     ++ A+    ++ G L I DEVQ G  RTG  +  F
Sbjct: 162 VNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY-AF 220

Query: 311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV 370
           E +G+ PDI T+AKG+ NG+P+GA++    +       ++ +TFGGN +  AA  A L +
Sbjct: 221 EHYGIEPDIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDI 280

Query: 371 IQKDKLQNNAHVVGSYLKERLT-ALKDKYGIIGDVRGRGFLLGVEFVTD-RQLKTPAKAE 428
           +        A   G+YL+E+L  AL+DK  +   VRG G+++G+E   D  QL   A+ +
Sbjct: 281 MLTAGFLEQALENGNYLQEQLQKALQDKETVT-TVRGLGYMIGIETTADLSQLVEAARDK 339

Query: 429 TLYIM 433
            L ++
Sbjct: 340 GLIVL 344

Length = 375

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score =  189 bits (481), Expect = 5e-55
 Identities = 118/363 (32%), Positives = 171/363 (47%), Gaps = 21/363 (5%)

Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
           +V G+  Y++D+ G+RYLD   G+  V  GH    + ++   Q   +    +    H  A
Sbjct: 38  IVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPA 97

Query: 145 -DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGN 197
            + AE LA+  PG+L  VFFT  G+EA E A  +A+ Y       G + +IS   AYHG 
Sbjct: 98  IELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGT 157

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKDVQDLIDFG 250
             G +  T    +K  F  +  G     N + YR    G D E +    A  +++ I+F 
Sbjct: 158 TQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE 217

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
               VA    E +Q  GG     PGY   V +   +   L ++DEV   F R G  F G 
Sbjct: 218 GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GC 276

Query: 311 EAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAE-VLTRRNYF---NTFGGNPVCTAAGH 365
           E  G VPDI+T AKGI +G  PLGA++ +  + E  L     F    TFGG+PV  A   
Sbjct: 277 ERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVAL 336

Query: 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
           A L + +++ L ++        +  L  L D   I+GDVRG G+  G+E V D+  K   
Sbjct: 337 ANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETF 395

Query: 426 KAE 428
             +
Sbjct: 396 TDD 398

Length = 460

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score =  188 bits (480), Expect = 6e-55
 Identities = 127/382 (33%), Positives = 197/382 (51%), Gaps = 27/382 (7%)

Query: 53  PPYDGPSADEILAKRKTFLSPSL-FHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATV 111
           PP  GP A E++ + K  LSP +   L+  PL    G    + D +G  ++D   G A  
Sbjct: 10  PP--GPKAKELIEREKRVLSPGIGVKLF--PLVPKRGFGALIEDVDGNVFIDFLAGAAAA 65

Query: 112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEA 170
             G+ HP +V ++  Q+  IQHS + Y +   A   AE LA   P     V F  SG++A
Sbjct: 66  STGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDA 125

Query: 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATA----QSNWK--FNVVQTGVHHALN 224
            ++AI +++  T    I++   AYHG    T+GAT+    QS+ K  F+ +   V     
Sbjct: 126 VDMAIKVSKFSTRRPWILAFIGAYHGQ---TLGATSVAAFQSSQKRGFSPLMPNVVWIPY 182

Query: 225 PDPYRGVFGADG-----EMYAKDVQDLIDFGTS-----GHVAGFLSESIQGVGGIIELAP 274
           P+PYR  +G +G     E+  + +  L ++  S       VA   +E IQG  GI+    
Sbjct: 183 PNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPE 242

Query: 275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 334
            +   + K + + G L + DEVQ G  RTG  F   E   V PD++   KG+ +G+ L  
Sbjct: 243 NFFKELKKLLDEHGILLVMDEVQTGIGRTGKWF-ASEWFEVKPDLIIFGKGVASGMGLSG 301

Query: 335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
           V+   E+ + LT  +   T   NPV +AA  A L++I+++ L  NA  VG ++K+RL  +
Sbjct: 302 VIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEM 360

Query: 395 KDKYGIIGDVRGRGFLLGVEFV 416
           K+ + +IGDVRG+G ++GVE V
Sbjct: 361 KESFEVIGDVRGKGLMIGVEIV 382

Length = 457

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score =  188 bits (480), Expect = 8e-55
 Identities = 110/373 (29%), Positives = 187/373 (50%), Gaps = 23/373 (6%)

Query: 70  FLSPSLFHLYSKP-LNVVDG-KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ 127
           FL  ++    S P L+V+   +  Y+ D +G++Y+D F G      G+ HP+V++ +  Q
Sbjct: 45  FLHQAM----STPCLDVLASAEGIYIEDVDGKKYMD-FHGNNVHQLGYGHPHVIEKVKEQ 99

Query: 128 IKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI 187
           + ++  S   + N    + AE L     G L  V F   GT A  +A+ +AR  TG   +
Sbjct: 100 MAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKV 159

Query: 188 ISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFG---ADGEMYAKD 242
           +SL +++HG +   +    ++ ++  +  +  GV        YRG F         YA  
Sbjct: 160 VSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY 219

Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           ++ +I+    G +  F++E+++     +  +  Y   V +   K   L I DE+  G  R
Sbjct: 220 LEYVIE--KEGGIGAFIAEAVRNTDVQVP-SKAYWKRVREICDKHNVLLIIDEIPNGMGR 276

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTP--EIAEVLTRRNYFNTFGGNPV 359
           TG  F   +A+G+ PDI+ + KG+G G +P+ A++T      A  ++  +Y  T   +P+
Sbjct: 277 TGEWF-THQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHY--THEKSPL 333

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             AA  A ++VI+++ L         +++ERL  +K KY +IGDVRG G L GVE VTDR
Sbjct: 334 GCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDR 393

Query: 420 QLKTPA--KAETL 430
             K  A  +AE +
Sbjct: 394 HTKERAYDEAEAV 406

Length = 459

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  186 bits (474), Expect = 1e-54
 Identities = 112/371 (30%), Positives = 175/371 (47%), Gaps = 42/371 (11%)

Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
            V G+   L+D+ G+ Y+D  GGIA    GH HP + +++  Q  +  H+   Y N  + 
Sbjct: 25  PVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVL 84

Query: 145 DFAEAL-----ASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNA 193
             A+ L     A +       VFF NSG EANE A+ +AR Y      +  + I++ +NA
Sbjct: 85  RLAKKLIDATFADR-------VFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNA 137

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251
           +HG    T+ A  Q  +   F  +   + HA     Y  +  A           LID  T
Sbjct: 138 FHGRTLFTVSAGGQPKYSQDFAPLPPDIRHA----AYNDLNSA---------SALIDDQT 184

Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
                  + E IQG GG+I     +L  + +   +   L I DEVQ G  RTG   + + 
Sbjct: 185 ----CAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM 239

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
            +GV PD++T AK +G G P+GA++TT + A V+T   +  T+GGNP+ +A    VL++I
Sbjct: 240 HYGVTPDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI 299

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
              ++ N       +  ERL  +  +YG+  ++RG G L+G     +       KA+ + 
Sbjct: 300 NTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQIS 355

Query: 432 IMDKMKGICAL 442
                 G+  L
Sbjct: 356 QEAAKAGVMVL 366

Length = 406

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score =  185 bits (470), Expect = 1e-53
 Identities = 114/373 (30%), Positives = 173/373 (46%), Gaps = 16/373 (4%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P      +  ++ D  G+ YLD   G  T+  GH HP +   I++ ++       L L  
Sbjct: 22  PTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTT 81

Query: 142 AIAD-FAEALASKMPG---NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197
            + D F EAL + +P    + K+ F   SG +A E AI +A+ YTG  ++IS    +HG 
Sbjct: 82  PLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGM 141

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV----QDLIDFGT 251
             G +  T     K    ++  GV     P  YR  FG  GE  +       ++ I+   
Sbjct: 142 TIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVE 201

Query: 252 SGHV--AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
           SG    A  + E+IQG GG++     +L  + +  +K     I DEVQAGF R+G+ F  
Sbjct: 202 SGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-A 260

Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369
           FE  G+ PD V M+K +G G+PL  ++  PE  +      +  TF GN +    G   L 
Sbjct: 261 FEHAGIEPDFVVMSKAVGGGLPLAVLLIAPEF-DAWQPAGHTGTFRGNQLAMVTGTEALN 319

Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK--TPAKA 427
             + D L  NA   G  +   L  +  ++  IG+VRGRG + G+  V +RQ K  T A  
Sbjct: 320 YWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYP 379

Query: 428 ETLYIMDKMKGIC 440
               +   ++G C
Sbjct: 380 RDCELAAAIQGAC 392

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score =  184 bits (470), Expect = 2e-53
 Identities = 126/397 (31%), Positives = 195/397 (49%), Gaps = 38/397 (9%)

Query: 61  DEILAK-RKTFLSPSLFHLY------SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
           DE+LA  R  F  PS  HL            V  G+   + D  GRRY+DAF G+  V  
Sbjct: 6   DELLAWDRDHFFHPST-HLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNV 64

Query: 114 GHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN 171
           G+    V ++I  Q K +   H+ V +   A    ++ +  + P  +  V++  SG++AN
Sbjct: 65  GYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDAN 124

Query: 172 ELAIMMARLYTGC------NDIISLRNAYHGN--AAGTMGATAQSNWKFNVVQTGVHHAL 223
           E  I +   Y           IIS    YHG+    G++   +  +  F++    V H  
Sbjct: 125 ETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTE 184

Query: 224 NPDPYRGVFGADGEMY--------AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG 275
            P  YR    AD  M         A ++++LI       +A F++E + G GGI+    G
Sbjct: 185 APHYYRR---ADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAG 241

Query: 276 YLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGA 334
           Y PA+   +KK   L IADEV  GF R GS F G + +G+ PD++T+AKG+ +   PL  
Sbjct: 242 YWPAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHYGIEPDLITVAKGLTSAYAPLSG 300

Query: 335 VVTTPEIAEVLTRRNYFN-------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            +   ++ +VL + +  +       T+ G+P+C AA  A L +++++ L  NA  VG+Y 
Sbjct: 301 SIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYF 360

Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
           + RL A    + ++G+VRG G L  VEFV DR  +TP
Sbjct: 361 RARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTP 397

Length = 461

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score =  183 bits (467), Expect = 2e-53
 Identities = 125/356 (35%), Positives = 174/356 (48%), Gaps = 25/356 (7%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---VLYLNHAIADFAEA 149
           L+D  GR Y+D   GIA +  GH HP VV ++  Q+ +  H+    V Y ++     AE 
Sbjct: 34  LWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYV--TLAER 91

Query: 150 LASKMP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM---GA 204
           + +  P  G  K  FFT +G EA E A+ +AR YTG   +I+   A+HG    TM   G 
Sbjct: 92  INALAPIDGPAKTAFFT-TGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGK 150

Query: 205 TAQSNWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFL 259
            A     F      + HAL P+   GV   +       ++  D+           VA  L
Sbjct: 151 VAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI-------APDQVAAIL 203

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E IQG GG     P ++ A+     + G L IADEVQ GFARTG  F   E + V PD+
Sbjct: 204 LEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AMEYYDVKPDL 262

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           +TMAK +G G+P+ AVV   E+ +         T+ GNP+  AA  AVL VI ++KL   
Sbjct: 263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQR 322

Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK 435
           A ++G++L E L   K     I D+R RG ++ VEF  D Q   P+   T     +
Sbjct: 323 ALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEF-NDPQTGKPSPEFTRQYQRQ 377

Length = 421

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score =  183 bits (466), Expect = 3e-53
 Identities = 117/355 (32%), Positives = 174/355 (49%), Gaps = 36/355 (10%)

Query: 74  SLFHLY---SKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI 128
           SL H Y    +P  VV   G+   ++D+ GR YLD   GIA    GH  P +V ++  Q 
Sbjct: 10  SLAHYYLPVYRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQA 69

Query: 129 KRIQHSTVLYLNHAIADFAEAL--ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND 186
            ++ H++ ++ +      AE L  AS+     + VF  NSGTEANE AI + R +     
Sbjct: 70  GKLWHTSNVFYSAPPLKLAEELVTASRFA---EKVFLCNSGTEANEAAIKLVRKWASSQG 126

Query: 187 -------IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239
                  I++ R ++HG     + ATAQ  +     Q G         Y  + G    + 
Sbjct: 127 RPADKRVIVTFRGSFHGRTLAAVTATAQPKY-----QEG---------YEPLPGGFRYVD 172

Query: 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
             DV+ L      G VA  + E IQG GG++  APG+L  V     +   L + DE+Q G
Sbjct: 173 FNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCG 232

Query: 300 FARTGSHF--WGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN 357
             RTG+ F  W  +   V PDIVT+AK +G G P+GA++  P++AE +    +  TFGGN
Sbjct: 233 MGRTGTLFAHWQEQ---VTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGN 289

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           P+  A     L+ +   ++  N     + L+  L AL  ++G+   VRGRG +LG
Sbjct: 290 PLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLG 344

Length = 408

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  184 bits (468), Expect = 5e-53
 Identities = 120/367 (32%), Positives = 183/367 (49%), Gaps = 24/367 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI--VNQIKRIQHSTVLYL 139
           PL +   +  Y+ D  GR+++D   G  T+  GH HP V+++I  V   +   H+  L L
Sbjct: 46  PLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHT--LDL 103

Query: 140 NHAIAD-FAEALASKMPGNL----KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
              + D F + L + +P       K+ F   +GT+A E A+ + +  TG + ++S +  Y
Sbjct: 104 TTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGY 163

Query: 195 HGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE----MYAKDVQDLID 248
           HG + G +        K  +     GV     P  YR  FG  GE         +++L+D
Sbjct: 164 HGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLD 223

Query: 249 FGTSGHV--AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
              SG V  A  + E +QG GG+I     +L  + +  ++AG   I DE+Q+GF RTG  
Sbjct: 224 DPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK- 282

Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366
            + FE  G++PD+V ++K IG  +PL AVV   E  +      +  TF GN +  AAG A
Sbjct: 283 MFAFEHAGIIPDVVVLSKAIGGSLPL-AVVVYREWLDTWQPGAHAGTFRGNQMAMAAGSA 341

Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV-----TDRQL 421
            L+ I++ +L  +A  +G  L+E L  L+  Y  +GDVRGRG +LGVE V      D   
Sbjct: 342 TLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALG 401

Query: 422 KTPAKAE 428
             PA  E
Sbjct: 402 HPPANGE 408

Length = 464

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score =  182 bits (463), Expect = 1e-52
 Identities = 113/354 (31%), Positives = 173/354 (48%), Gaps = 20/354 (5%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMN 94

Query: 152 SKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN 209
            K+PG+   K +  T +G+EA E A+ +AR  T  + +I+   AYHG    T+  T + N
Sbjct: 95  QKVPGDFAKKTLLVT-TGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVN 153

Query: 210 ---WKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFLSE 261
                  ++   V+ AL P P  GV   D       ++  D            +A  + E
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAA-------PEDIAAIIIE 206

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            +QG GG    +P ++  +     + G + IADEVQ G  RTG+  +  E  GV  D+ T
Sbjct: 207 PVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMGVAADLTT 265

Query: 322 MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAH 381
            AK I  G PL  V    E+ + +       T+ GNP+  AA  AVLKV +++ L   A+
Sbjct: 266 FAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKAN 325

Query: 382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK 435
            +G  LK+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ +
Sbjct: 326 ALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVAR 379

Length = 425

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  180 bits (458), Expect = 2e-52
 Identities = 113/351 (32%), Positives = 162/351 (46%), Gaps = 46/351 (13%)

Query: 86  VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD 145
           V GK   L+D  G+ YLD   GIA    GH  P  V ++  Q   + H + +Y      +
Sbjct: 2   VSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVE 61

Query: 146 FAEAL-----ASKMPGNLKVVFFTNSGTEANELAIMMARLY-------------TGCNDI 187
            A+ L     A +       VFF NSGTEANE AI  AR Y             +   + 
Sbjct: 62  LAKRLVASSFADR-------VFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEF 114

Query: 188 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245
           +S  N++HG   G +  T++  ++  F  +  GV        Y      + E   K +Q 
Sbjct: 115 VSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFV----EY-----GNLEAARKLIQ- 164

Query: 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS 305
                  G  A    E +QG GGI      +L  +     +AG L + DEVQ G  RTG 
Sbjct: 165 ------KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG- 217

Query: 306 HFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP-VCTAAG 364
           + W  EA+GV PDI+T+AK +  G+P+GAV+ T ++A  +   ++ +TF G P VC AA 
Sbjct: 218 YLWAHEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAA- 276

Query: 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
            AVL  I K     +    G YL+E L         + +VRG G L+G++ 
Sbjct: 277 LAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQL 327

Length = 382

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score =  182 bits (462), Expect = 2e-52
 Identities = 117/340 (34%), Positives = 170/340 (50%), Gaps = 21/340 (6%)

Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFA 147
           G +  L D  G  ++D  GG      GH +P V+ ++ NQ+ +    +   L+   A  A
Sbjct: 64  GGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLA 123

Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---GCNDIISLRNAYHGNAAGTMGA 204
           + LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + A
Sbjct: 124 KTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSA 183

Query: 205 TAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262
           TA+  ++  F  +  G HH          FG D E   K + +    G    VA  + E 
Sbjct: 184 TAKPAFRKPFMPLLPGFHHV--------AFG-DIEAMLKALNECKKTGDD--VAAIILEP 232

Query: 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322
           IQG GG+I    GYLPAV     + G L I DEVQ G  RTG  F   E  GV PDI+ +
Sbjct: 233 IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGVQPDILCL 291

Query: 323 AKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           AK +G G+ P+GA + T  +  VL    + +  TFGGNP+  AA  A +  + +  L   
Sbjct: 292 AKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQ 351

Query: 380 AHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTD 418
           A + G +L +    L  +Y  +I + RG+G L+ +EF  +
Sbjct: 352 AAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN 391

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score =  177 bits (451), Expect = 1e-51
 Identities = 110/340 (32%), Positives = 172/340 (50%), Gaps = 36/340 (10%)

Query: 78  LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137
           LY K L +V G+  Y++D  GRRYLD   GI     GH HP  V+ +  Q++++  +  +
Sbjct: 3   LYRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPM 62

Query: 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197
           + +    +  E L+  +  N + V+  NSGTEA E A+  ARLYTG  +II++ NA+HG 
Sbjct: 63  FEHEEKEEMLEELSKWV--NYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGR 120

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255
             G + AT +  ++  F  +  G  H     P+  V  A   +             +   
Sbjct: 121 TMGALSATWKPKYREDFEPLVPGFKHI----PFNDVEAAKEAI-------------TKET 163

Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV 315
           A  + E IQG GGI+     ++  +    +  G L IADEVQ+G  RTG  F   E + V
Sbjct: 164 AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKV 221

Query: 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK 375
            PDIVTM KGIGNG+P+   +T  ++     R  + +TFGGNP+   A    L+++++++
Sbjct: 222 EPDIVTMGKGIGNGVPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRER 277

Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           L   A        E+   +K +  +    RGRG ++G+  
Sbjct: 278 LVEKA-------GEKFIEIKGERVVT--TRGRGLMIGIVL 308

Length = 364

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  172 bits (439), Expect = 2e-49
 Identities = 118/382 (30%), Positives = 184/382 (48%), Gaps = 44/382 (11%)

Query: 77  HLYSKPLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           H Y  PL VV  K +  +++D  G+RYLD     + V  GHCHP +V ++  Q +++  S
Sbjct: 14  HNY-HPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLS 72

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCND 186
           +  + N    +FAE + +K+ G  KV+   N+G EA E AI +AR +             
Sbjct: 73  SRAFYNDVFGEFAEYV-TKLFGYDKVLP-MNTGAEAVETAIKLARKWGYKVKGIPENQAI 130

Query: 187 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK----D 242
           I+S +  +HG    T+GA + S               +PD     FG     + K    +
Sbjct: 131 IVSAKGNFHGR---TLGAISMST--------------DPDSRTN-FGPYVPGFKKIPYNN 172

Query: 243 VQDLID-FGTSG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           ++ L +     G +V  F+ E IQG  G++    GYL  V +   K   L IADE+Q G 
Sbjct: 173 LEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGL 232

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPV 359
            RTG      +   V PDIV + K +  G+ P+ AV+   ++   +    + +T+GGNP+
Sbjct: 233 GRTGK-LLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPL 291

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             A   A L+V++++KL  NA  +G   +++L  L     II +VRGRG L  +      
Sbjct: 292 ACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLPK--PIITEVRGRGLLNAIVI---D 346

Query: 420 QLKTPAKAETLYIMDKMKGICA 441
           + KT   A  L +  K KG+ A
Sbjct: 347 ESKTGRTAWDLCLKLKEKGLLA 368

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  171 bits (435), Expect = 3e-48
 Identities = 114/364 (31%), Positives = 175/364 (48%), Gaps = 23/364 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-N 140
           PL +  G+ + L+D NG  Y D    I     GH  P + ++I  Q+ +I HST+L L N
Sbjct: 39  PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLAN 98

Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA------RLYTGCNDIISLRNAY 194
                 AE L   +P  LK VF+++SG  A E+AI MA      +        ++L+NAY
Sbjct: 99  VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAY 158

Query: 195 HGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD-GEMYAKDVQDLIDFGT 251
           HG+  G +  GA    +  ++ +         P  YR  +G D  E+  K +++L +   
Sbjct: 159 HGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLK 218

Query: 252 SGH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
             H  +A  + E  +QG GG+I +  GYL  +     K   L I DEV  GF RTG  F 
Sbjct: 219 EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF- 277

Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVC 360
             E   V PDI+T  KG+  G +P+   VTT EI          ++ +F  +++ GNP+ 
Sbjct: 278 ACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLG 337

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A   A L++ +K  L         Y+  +L  L      +GD+R  G ++G+E V +++
Sbjct: 338 CAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKE 396

Query: 421 LKTP 424
            K P
Sbjct: 397 TKEP 400

Length = 460

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score =  166 bits (422), Expect = 2e-46
 Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 32/363 (8%)

Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-----A 142
            K   L D +G + LDAF G+  V  G+    +V++   Q++ + ++T  +  H     A
Sbjct: 35  AKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYF--HFGSEPA 92

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHG 196
           I   A  LA + PG+L  V+FT  G++A + A+   R Y            ISL   YHG
Sbjct: 93  I-RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHG 151

Query: 197 NAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGE-MYAKDVQDLID----F 249
           +++   G TA   +   F++     H   +P PYR   G D + + A  V  L       
Sbjct: 152 SSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL 211

Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
           G   +VA F  E IQG GG+I    G+L A+ ++ ++ G L +ADEV  GF RTG  F  
Sbjct: 212 GAD-NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-A 269

Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-------TRRNYFNTFGGNPVCT 361
            EA GVVPD++T+AKG+ +G +P+GAV+ +  + + +           +  T+  +PV  
Sbjct: 270 CEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSA 329

Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL 421
           A G  VL++  +  L  N    G      L AL+  + ++GDVRGRG L  +E V D+  
Sbjct: 330 AVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRA-HPLVGDVRGRGLLGALELVADKAT 388

Query: 422 KTP 424
           KTP
Sbjct: 389 KTP 391

Length = 459

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score =  163 bits (416), Expect = 1e-45
 Identities = 110/360 (30%), Positives = 169/360 (46%), Gaps = 28/360 (7%)

Query: 80  SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
           + P  +V  +  Y  D +GR+ LD   G+     GH  P +V+++  Q   + ++    +
Sbjct: 30  AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQM 89

Query: 140 NHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRN 192
            H +A + AE LA   PG L  VFFTNSG+E+ + A+ +A  Y           +I    
Sbjct: 90  GHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRER 149

Query: 193 AYHG-NAAGTMGATAQSNWK-FNVVQTGV-H--HALNPDPYRGVFG--ADGEMYAKDVQD 245
            YHG    G       +N K F  +  GV H  H L+        G    G   A D++ 
Sbjct: 150 GYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLER 209

Query: 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS 305
           L+    +  +A  + E + G  G++    GYL  + +   K G L I DEV  GF R G+
Sbjct: 210 LVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269

Query: 306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---------RNYFNTFG 355
            F   E  GV PDI+T AKG+ NG IP+GAV+ + EI +   +           Y  T+ 
Sbjct: 270 AF-AAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGY--TYS 326

Query: 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
            +PV  AAG A L + +++ L   A  +  Y ++ + +LK    +I D+R  G + G+E 
Sbjct: 327 AHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVI-DIRNIGLVAGIEL 385

Length = 445

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score =  162 bits (411), Expect = 2e-45
 Identities = 117/369 (31%), Positives = 173/369 (46%), Gaps = 25/369 (6%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---VLYLNH-AIADFAE 148
           L D  G  Y+D   GIA +  GH HP +V ++  Q+++  H+    V Y ++  +A+   
Sbjct: 34  LKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKIN 93

Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM---GAT 205
           ALA  + G  K  FFT +G EA E A+ +AR +TG   +I+    +HG    TM   G  
Sbjct: 94  ALAP-VSGQAKTAFFT-TGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKV 151

Query: 206 AQSNWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFLS 260
           A     F      V+H   P    G+   D       ++  D++       +  VA  + 
Sbjct: 152 APYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIE-------AKQVAAIIF 204

Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320
           E +QG GG        + A+ +   + G + IADEVQ+GFARTG  F   + +   PD++
Sbjct: 205 EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLF-AMDHYADKPDLM 263

Query: 321 TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
           TMAK +  G+PL  VV    I +         T+ GNP+  AA HAVL +I K+ L   A
Sbjct: 264 TMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERA 323

Query: 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM--KG 438
           + +G  LK  L   K+    I  VRG G ++  EF  D Q   P+ A    I  +   +G
Sbjct: 324 NQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEF-NDPQTGEPSAAIAQKIQQRALAQG 382

Query: 439 ICALFFSQY 447
           +  L    Y
Sbjct: 383 LLLLTCGAY 391

Length = 421

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score =  162 bits (412), Expect = 5e-45
 Identities = 116/391 (29%), Positives = 181/391 (46%), Gaps = 58/391 (14%)

Query: 77  HLYSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           H Y  P+ VV    K   ++D  G++YLD     + V  GHCHP ++ ++  Q +++  S
Sbjct: 52  HNYH-PIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLS 110

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCND 186
           +  + N    +FAE L + M G   V+   N+G E  E AI +AR +             
Sbjct: 111 SRAFYNDKFPEFAEYL-TSMFGYDMVLPM-NTGAEGVETAIKLARKWGYEKKGIPKNEAI 168

Query: 187 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246
           I+S    +HG    T+ A + S               + +  RG FG     + K     
Sbjct: 169 IVSCCGCFHGR---TLAAISMSC--------------DNEATRG-FGPLLPGHLK----- 205

Query: 247 IDFGTSG-----------HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
           +DFG               +A FL E IQG  G++    GYL AV +   K   L IADE
Sbjct: 206 VDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADE 265

Query: 296 VQAGFARTGSHF---WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF 351
           +Q G ARTG      W      V PD+V + K +G G IP+ AV+   ++   +    + 
Sbjct: 266 IQTGLARTGKMLACDW----EEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHG 321

Query: 352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFL 410
           +TFGGNP+ +A   A L+V+Q +KL   +  +G  L+++L  ++ ++  +I +VRGRG L
Sbjct: 322 STFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLL 381

Query: 411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICA 441
             V    +     P  A  + +  K +G+ A
Sbjct: 382 NAVVL--NSPKLGPVSAYDVCLKLKERGLLA 410

Length = 474

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  161 bits (409), Expect = 8e-45
 Identities = 108/367 (29%), Positives = 171/367 (46%), Gaps = 46/367 (12%)

Query: 78  LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137
           L+  P+ +V  +  YL+  +GR  +DA         GH HPY+  +I  Q+ R+ H  V+
Sbjct: 21  LHPPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDH--VI 78

Query: 138 Y--LNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDII 188
           +    H      A+ L +  PG L  VFF++SG+ A E+A+ MA  Y       G +  +
Sbjct: 79  FAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFL 138

Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF----------GADGEM 238
           SLR  YHG+  GTM          +V   G  HAL    Y  +               + 
Sbjct: 139 SLRGGYHGDTIGTM----------SVGDRGGMHAL----YTPLLFEQVTAPFPPDGYEQA 184

Query: 239 YAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
               ++ L++   +G +A F+ E  +QG GG++   P YL  + +   + G L I DE+ 
Sbjct: 185 TLDALEALLE-KHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA 243

Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT----RRNYFN 352
            GF RTG+ F   E  GV PDI+ ++KG+  G +PL A + T EI E        + + +
Sbjct: 244 TGFGRTGTLF-ACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMH 302

Query: 353 --TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
             ++  NP+  AA +A L + + + +      + + L E L   +D  G + DVR  G +
Sbjct: 303 SPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPG-VADVRVLGAI 361

Query: 411 LGVEFVT 417
             VE   
Sbjct: 362 GAVELDR 368

Length = 423

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score =  157 bits (398), Expect = 2e-43
 Identities = 110/358 (30%), Positives = 168/358 (46%), Gaps = 49/358 (13%)

Query: 81  KPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138
           KPL+VV   G+  +++D +G RYLD     + V  GHCHP ++ ++V Q  R+  ++  +
Sbjct: 21  KPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAF 80

Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISL 190
            N  +A   E LA+ + G+ KV+   NSG EA E AI   R +         G  +II  
Sbjct: 81  RNDQLAPLYEELAA-LTGSHKVLPM-NSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVC 138

Query: 191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
            + +HG     +G +                  +PD   G FG     +    + ++ FG
Sbjct: 139 ADNFHGRTLSIVGFST-----------------DPDARGG-FGP----FTPGFR-VVPFG 175

Query: 251 ---------TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
                    T   VA FL E IQG  G+I    GY   V +         I DE+Q G  
Sbjct: 176 DAEALEAAITPNTVA-FLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLG 234

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           RTG      E  G+  D+  + K +  G  P+ AV++  E+  VL    + +TFGGNP+ 
Sbjct: 235 RTGK-LLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLA 293

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
            A   A LKV+ ++ +  NA  +G+Y  E L +++    I+ +VRGRG +L VE   +
Sbjct: 294 CAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRS--NIVREVRGRGLMLAVELEPE 349

Length = 401

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score =  156 bits (396), Expect = 7e-43
 Identities = 109/351 (31%), Positives = 169/351 (48%), Gaps = 43/351 (12%)

Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR--IQHS----TVLYLNHA 142
           K  +L+DE+G+ Y+D F G   +  GH +P +  ++++ ++R  I H     T      A
Sbjct: 29  KGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTT-----A 83

Query: 143 IADFAEALASK--MPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
             +F E        P  L  KV F   +GT A E A+ +AR  TG  +I++  N +HG  
Sbjct: 84  KREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMT 143

Query: 199 AGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG- 253
            G++  T   N        V    V       PY G FG D +     ++ L++  +SG 
Sbjct: 144 LGSLAVTG--NSHKRQGAGVPLNNVTRM----PYDGYFGGDVD-TLAYLEKLLEDSSSGV 196

Query: 254 -HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
              A  + E++QG GGI   +  +L  + K  +K   L I D++QAG  RTG+ F+ FE 
Sbjct: 197 DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFER 255

Query: 313 HGVVPDIVTMAKGI-GNGIPLGAVVTTPEI-----AEVLTRRNYFNTF-GGNPVCTAAGH 365
            G+ PDIVT++K I G G+P+  V+  PE+      E      +  TF G N     A  
Sbjct: 256 AGITPDIVTLSKSISGYGLPMALVLIKPELDVWKPGE------HNGTFRGNNLAFVTATA 309

Query: 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEF 415
           A+ +    D  +      G  ++ERL  +  KY G+  +VRGRG + G++F
Sbjct: 310 ALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDF 360

Length = 425

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score =  156 bits (395), Expect = 9e-43
 Identities = 106/356 (29%), Positives = 167/356 (46%), Gaps = 24/356 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V  K  Y    +GRR LD   G+  V  GH  P +V+++  Q   + ++    + H
Sbjct: 29  PRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGH 88

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAY 194
             A + A  +A   PG L  VFFTNSG+E+ + A+ +A  Y           +I     Y
Sbjct: 89  PKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGY 148

Query: 195 HG-NAAGT-MGATAQSNWKFNVVQTGVHHALNP-DPYRGVFG----ADGEMYAKDVQDLI 247
           HG    G  +G    +   F  +  GV H  +  D  R  F       G   A +++ L+
Sbjct: 149 HGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLV 208

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
               +  +A  + E + G  G++    GYL  + +   K G L I DEV  GF R G+ F
Sbjct: 209 TLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF 268

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFN--TFGGNPV 359
              +  GV PD++T AKG+ NG IP+GAV  + EI +   +       +F+  T+ G+P+
Sbjct: 269 -AAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPL 327

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             AA  A L + +++ L   A  +  Y ++ L +L+D   +I D+R  G +  VE 
Sbjct: 328 ACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVI-DIRNLGLVGAVEL 382

Length = 442

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score =  153 bits (388), Expect = 6e-42
 Identities = 106/353 (30%), Positives = 168/353 (47%), Gaps = 21/353 (5%)

Query: 79  YSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR--IQHS 134
           Y +    V    K   L+DE+G+ Y+D F G   +  GH +P +  ++++ +    I HS
Sbjct: 13  YCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHS 72

Query: 135 TVLYLNHAIADFAEALASKM--PGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISL 190
             +    A  +F E     +  P  L  KV F   +GT A E A+ +AR  TG ++++S 
Sbjct: 73  LDMA-TEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSF 131

Query: 191 RNAYHGNAAGTMGATAQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
            NA+HG   G++  T      F     GV    ++  PY G  G D +      + L++ 
Sbjct: 132 TNAFHGMTLGSLSVTGNR---FKRQGAGVPLSNVSRMPYDGYLGGDVD-TIAYFEKLLED 187

Query: 250 GTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
            +SG    A  + E++QG GGI   +  +L  + K  ++   L I D++QAG  RTG  F
Sbjct: 188 SSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-TF 246

Query: 308 WGFEAHGVVPDIVTMAKGI-GNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366
           + FE  G+ PDIV ++K I G G+PL   +  PE+ +V     +  TF GN +      A
Sbjct: 247 FSFEPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATA 305

Query: 367 VLKVI-QKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVT 417
            L+     D  +         ++ERL  +  +Y  +I  VRGRG + G+E   
Sbjct: 306 ALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGD 358

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  152 bits (385), Expect = 1e-41
 Identities = 104/355 (29%), Positives = 166/355 (46%), Gaps = 51/355 (14%)

Query: 82  PLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
           PL +V  + +  ++ D  G RY+D     + V  GH HP ++ ++ +Q  ++  ++  + 
Sbjct: 21  PLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFH 80

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLR 191
           +  +  + E +A K+ G   V+   N+G EA E AI  AR +            +II+  
Sbjct: 81  SDQLGPWYEKVA-KLTGKDMVLPM-NTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACE 138

Query: 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGA--DGEMYAKDVQDLIDF 249
             +HG    TM A + S+                +  RG FG    G          I +
Sbjct: 139 GNFHGR---TMAAVSLSS--------------EEEYKRG-FGPMLPG-------IKKIPY 173

Query: 250 G--------TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
           G         + + A FL E IQG  GI     G+L A  +  K+   L IADE+Q G  
Sbjct: 174 GDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLG 233

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           RTG  F   +   V PD+  + K +G G+ P+  V    +I  V T  ++ +TFGGNP+ 
Sbjct: 234 RTGKLF-ACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLA 292

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
            A   A L+V++++KL   +  +G Y KE+L  + +   +I +VRGRG  +GVE 
Sbjct: 293 CAVSIAALEVLEEEKLPERSLELGEYFKEQLKEIDNP--MIKEVRGRGLFIGVEL 345

Length = 396

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score =  142 bits (361), Expect = 6e-38
 Identities = 102/349 (29%), Positives = 160/349 (45%), Gaps = 28/349 (8%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +  GK  YL D +G  Y+D   G   +  GH HP VV+++  Q++R           
Sbjct: 36  PIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER---GLSFGAPT 92

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
            +  + AE L  ++P +++ V F NSGTEA   AI +AR YTG + II     YHG++  
Sbjct: 93  ELEVELAELLIERVP-SIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDS 151

Query: 201 TM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSGH-VAG 257
            +  A + +    +    GV   +        +         D++ L + F   G  +A 
Sbjct: 152 LLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN--------DLEALEEAFEEYGDDIAA 203

Query: 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGV 315
            + E + G  G++   PG+L  + +  ++ G L I DEV  GF  A  G+       +GV
Sbjct: 204 VIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGA----QGYYGV 259

Query: 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQ 372
            PD+ T+ K IG G+P+GA     EI E L          T  GNP+  AAG A L+ + 
Sbjct: 260 EPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELM 319

Query: 373 KDKLQNNAHVV--GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
            ++      +   G  L E L A  +++GI   V   G + G+ F  + 
Sbjct: 320 TEE-GVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEG 367

Length = 432

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score =  142 bits (359), Expect = 1e-37
 Identities = 107/364 (29%), Positives = 177/364 (48%), Gaps = 34/364 (9%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY--L 139
           P  +V G+  +L+D +G+RYLD   G+     G+    +  +   Q++++ +  + +   
Sbjct: 37  PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTT 96

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNA 193
           + A+ + +E L S +PG+     +TNSG+EANE+ I   R Y           +I   N 
Sbjct: 97  HPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNG 156

Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD------PYRGVFGAD------GEMYAK 241
           YHG+   T+ ATA    KF     G    L PD      PY    G +      G   A 
Sbjct: 157 YHGS---TLAATALGGMKFMHEMGG----LIPDVAHIDEPYWYANGGELTPAEFGRRAAL 209

Query: 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
            +++ I    + +VAGF++E  QG GG+I     Y P + +  ++   L  ADEV  GF 
Sbjct: 210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFG 269

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN----YFNTFGG 356
           RTG  F   E  G  PD +++AKG+ +G +P+G +V +  IAE L  +     +  T+ G
Sbjct: 270 RTGEWF-AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSG 328

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHV-VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           +PV  A   A LK ++ + +        G YL+  L  +   + ++G+V+G G +  ++F
Sbjct: 329 HPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQF 388

Query: 416 VTDR 419
             D+
Sbjct: 389 AEDK 392

Length = 460

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score =  140 bits (355), Expect = 9e-37
 Identities = 111/381 (29%), Positives = 182/381 (47%), Gaps = 46/381 (12%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL 139
           PL +   +  Y++D NG++YLDA  G+     G   P +V +   Q+ ++   HS   + 
Sbjct: 72  PLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHS---FW 128

Query: 140 NHAIA---DFAEAL-----ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------N 185
           N       D A+ L     A KM      VFFTNSG+EAN+  + +   Y          
Sbjct: 129 NRTTKPSLDLAKELLEMFTARKMGK----VFFTNSGSEANDTQVKLVWYYNNALGRPNKK 184

Query: 186 DIISLRNAYHGN---AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM---- 238
             I+   +YHG+   +A   G  A    KF++    V H   P  +R  F   GE     
Sbjct: 185 KFIARSKSYHGSTLISASLSGLPALHQ-KFDLPAPFVLHTDCPHYWR--FHLPGETEEEF 241

Query: 239 ---YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
               A ++++LI       +A F++E + G GG+I     Y   +   +KK   L IADE
Sbjct: 242 STRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADE 301

Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-TRRNYFNT 353
           V   F R G+ F G + + + PD+V++AK + +  +P+GAV+ +PEI++V+ ++ N   +
Sbjct: 302 VICAFGRLGTMF-GCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGS 360

Query: 354 FG------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407
           F       G+PV  A     LK+ ++  +  + + +    ++ + A      IIG++RG 
Sbjct: 361 FAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGS-PIIGEIRGT 419

Query: 408 GFLLGVEFVTDRQLKTPAKAE 428
           G +LG EFV ++    P  AE
Sbjct: 420 GLILGTEFVDNKSPNDPFPAE 440

Length = 504

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score =  131 bits (332), Expect = 5e-34
 Identities = 104/359 (28%), Positives = 157/359 (43%), Gaps = 55/359 (15%)

Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQH 133
            P  V  GK  YL+D +G  Y+D       +  GH HP VV+++   ++R        + 
Sbjct: 30  TPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEA 89

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193
             +L         A+ + S++P  +++V F NSGTEA   A+ +AR YTG + II     
Sbjct: 90  EILL---------AKEIISRVPS-VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGC 139

Query: 194 YHGNA------AGTMGATAQSNWKFNVVQTGVHHALNPD----PYRGVFGADGEMYAKDV 243
           YHG+       AG+  AT            GV           PY             D+
Sbjct: 140 YHGHHDALLVKAGSGAATL-----GLPTSPGVPEDFAKLTLVLPY------------NDL 182

Query: 244 QDLID-FGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF- 300
           + L + F   G  +AG + E + G  G++   P +L  +    ++ G L I DEV  GF 
Sbjct: 183 EALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFR 242

Query: 301 -ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFN--TFGG 356
            A  G+     E  GV PD+ T+ K IG G+P+GA     EI E L      +   T  G
Sbjct: 243 VALGGAQ----EYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSG 298

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           NP+  AAG A LK++ ++ +      +   L E L+ + +  GI   V   G +  + F
Sbjct: 299 NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFF 357

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  131 bits (330), Expect = 2e-33
 Identities = 100/360 (27%), Positives = 165/360 (45%), Gaps = 27/360 (7%)

Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADF 146
           G+  +L D  G+RYLDA         GH +P +   I +Q+ +++H  +   +H  + + 
Sbjct: 36  GEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIEL 95

Query: 147 AEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAG 200
           +E L    P  L   F+ ++G+ A E+A+ M+  Y            ++L N+YHG    
Sbjct: 96  SERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLA 155

Query: 201 TM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE-----MYAKDVQDLIDFGTSG 253
            M  G  A     +  +        +PD Y    G   E     M+A   Q L +     
Sbjct: 156 AMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDE- 214

Query: 254 HVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
            +A  + E  IQG GG+    P YL  + ++  + G   I DE+  GF RTG+ F   E 
Sbjct: 215 -IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF-ACEQ 272

Query: 313 HGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCTAAG 364
            G+ PD + ++K +  G +PL AV+TT  + +       T R +   +++ GNP+  AA 
Sbjct: 273 AGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAA 332

Query: 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
            A L + ++D +  N   +   + E    L D +  + +VR  G +L +E V D+  KTP
Sbjct: 333 LATLDIFEQDNVIENNRALARRMAEATAHLAD-HPHVAEVRQTGMILAIEMVQDKASKTP 391

Length = 466

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  127 bits (321), Expect = 2e-32
 Identities = 108/340 (31%), Positives = 154/340 (45%), Gaps = 49/340 (14%)

Query: 82  PLNVVDGKMQYLFDENGRRYLD---AFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138
           P+ +  GK  Y +D +G +Y+D   A+G I T   GH HP+    I   I     + VLY
Sbjct: 36  PVVMERGKGAYFYDVDGNKYIDYLAAYGPIIT---GHAHPH----ITKAITEAAENGVLY 88

Query: 139 ---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
                  I +FA+ L   +P +L+ V F NSGTEA    I +AR YTG   II     YH
Sbjct: 89  GTPTELEI-EFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYH 146

Query: 196 GN------AAG----TMGATAQSNWKFNVVQTGVHHALN-PDPYRGVFGADGEMYAKDVQ 244
           G+      AAG    T+G    +    ++ Q  +    N  +  +      G+       
Sbjct: 147 GHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGD------- 199

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
                     VA  L E I G  GI+E  PG+L AV +   +AG L I DEV   F    
Sbjct: 200 ---------EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFR--- 247

Query: 305 SHFWGFEAH-GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV---LTRRNYFNTFGGNPVC 360
             + G +   GV PD+  + K IG G+P+GA     +I E    L       T  GNP  
Sbjct: 248 FMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPAS 307

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
            AAG A L+V+Q++ +      +G+ L+E +    +K+GI
Sbjct: 308 MAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGI 347

Length = 428

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  123 bits (311), Expect = 5e-31
 Identities = 103/374 (27%), Positives = 161/374 (43%), Gaps = 28/374 (7%)

Query: 77  HLYSKPL-NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST 135
           H ++ PL  +  G+  +L   +GRRYLDA     T   GH  P +  +I  Q   ++   
Sbjct: 41  HPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVM 100

Query: 136 VLYLNHAIA-DFAE---ALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND--- 186
           +    H  A   AE   A+A +  G   L  VF+ ++G+   E+A+ MA  Y        
Sbjct: 101 LAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHR 160

Query: 187 ---IISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241
               I+L N YHG   G +  G        +  +      A +PD Y    G   E YA 
Sbjct: 161 RTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL 220

Query: 242 D----VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
                +Q L +       A  L   +Q  GG+    P YL    +     G   IADE+ 
Sbjct: 221 QAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA 280

Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL---TRRNYF-- 351
            GF RTG+ F   E  GV+PD++ ++KG+  G +PL AV+ T ++ +     +R   F  
Sbjct: 281 TGFGRTGTLF-ACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLH 339

Query: 352 -NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
            +++ GNP+  AA  A L +   D +        + + + L A   ++  + DVR  G +
Sbjct: 340 SHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQ-LAAQIGEHPHVADVRQAGMV 398

Query: 411 LGVEFVTDRQLKTP 424
           +  E       +TP
Sbjct: 399 VAFELTRGGNKRTP 412

Length = 472

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  119 bits (299), Expect = 2e-29
 Identities = 97/356 (27%), Positives = 152/356 (42%), Gaps = 29/356 (8%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEAL 150
           +L  E+G   +DA     +   GH HP +  +   QI  + H     L H  A      L
Sbjct: 33  FLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKL 92

Query: 151 ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAAGTMGA 204
            +     L  VF+++SG+ + E+AI MA  Y+          +++ R+ YHG+    M  
Sbjct: 93  LNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSV 152

Query: 205 T-----AQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
                   S WK  + +     A  P P RG    +   Y + ++ LID      VA  +
Sbjct: 153 CDPEGGMHSLWKGTLPEQIF--APAP-PVRGSSPQEISEYLRSLELLID----ETVAAII 205

Query: 260 SESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
            E I QG GG+       +  V     K   L IADE+  GF RTG  F    A GV PD
Sbjct: 206 IEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF-ATLAAGVTPD 264

Query: 319 IVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN------YFNTFGGNPVCTAAGHAVLKVI 371
           I+ + K +  G +   A + T ++A++++  N      +  TF  NP+  A  HA L++I
Sbjct: 265 IMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEII 324

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA 427
           +    +     + + L   L+ L    G + DVR  G +  VE      ++   +A
Sbjct: 325 ETGMWRKQVKRIEAELIAGLSPLAHLPG-VADVRVLGAIGVVEMEQPVDMEEATQA 379

Length = 422

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  115 bits (291), Expect = 3e-28
 Identities = 106/359 (29%), Positives = 156/359 (43%), Gaps = 54/359 (15%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHSTVLYLNHAIA 144
           YL+D +G  Y+D  G    +  GH HP VV++++   ++        +    L       
Sbjct: 43  YLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVEL------- 95

Query: 145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGA 204
             AE +   +P ++++V   NSGTEA   AI +AR YTG + II     YHG+A   +  
Sbjct: 96  --AELVIELVP-SIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLL-V 151

Query: 205 TAQSNWKFNVVQTGVHHALNPD-PYRGVFGADGEMYAKD-----------VQDLID-FGT 251
            A S         G      PD P  GV       +AK            V++L + +G 
Sbjct: 152 KAGS---------GAATLGLPDSP--GVPED----FAKHTLTAPYNDLEAVEELFEEYG- 195

Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
              +A  + E + G  G++   PG+L  + +   + G L I DEV  GF R         
Sbjct: 196 -DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGA-QG 252

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFN--TFGGNPVCTAAGHAVL 368
            +GV PD+ T+ K IG G+P+GA     EI E L      +   T  GNP+  AAG A L
Sbjct: 253 YYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATL 312

Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA 427
           K++++         +   L E L     K GI   V   G + G+ F TD  +   A A
Sbjct: 313 KLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGL-FFTDEPVTNYADA 370

Length = 426

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score =  106 bits (266), Expect = 5e-25
 Identities = 96/333 (28%), Positives = 150/333 (45%), Gaps = 27/333 (8%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEAL 150
            L   +GRR +D          G+ HP +  ++ +QI  + H     + H  A +    L
Sbjct: 36  ELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKL 95

Query: 151 ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGAT 205
            +  P  L+ VF  +SG+ A E+A+ MA  Y           ++LR+ YHG+  G M   
Sbjct: 96  VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVC 155

Query: 206 AQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-----SGHVAGFL 259
              N   ++ +  +  +   P P       DGE    D +D+  F          +A  +
Sbjct: 156 DPDNSMHSLYKGYLPENLFAPAPQSRF---DGEW---DERDIAPFARLMAAHRHEIAAVI 209

Query: 260 SESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
            E I QG GG+    P +L  V K   + G L IADE+  GF RTG  F   E  G+ PD
Sbjct: 210 LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF-ACEHAGIAPD 268

Query: 319 IVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQ 372
           I+ + K +  G + L A +TT E+AE ++        +  TF GNP+  A  +A L +++
Sbjct: 269 ILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLE 328

Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405
               Q     + + L+E L  L+D   ++ DVR
Sbjct: 329 SGDWQQQVAAIEAQLREELAPLRD-APMVADVR 360

Length = 428

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  105 bits (263), Expect = 1e-24
 Identities = 99/363 (27%), Positives = 160/363 (44%), Gaps = 30/363 (8%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
            L V  G+  +L+D +GRRYLDA         GH +P +  ++ +Q+  ++H+ +    H
Sbjct: 37  LLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTH 96

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMA------RLYTGCNDIISLRNAY 194
             A + AE LA+   G L   FF + G  A E+A+ M+      R      + + L N Y
Sbjct: 97  EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGY 156

Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAK-------DVQD 245
           HG   G +G T  + +K  ++ +    H   +PD  RG     GE  A        DV+ 
Sbjct: 157 HGETIGALGVTDVALFKDAYDPLIRHAHVVASPDA-RG--ARPGETAADVAARALADVRR 213

Query: 246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
           L     +G +A  + E  +Q   G+    P YL  +     + G   IADE+  G  RTG
Sbjct: 214 LFA-ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG 272

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYF--NTFGGN 357
           + F+  E  GV PD + ++KGI  G +PL  V++   I          R +   +++ GN
Sbjct: 273 T-FFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGN 331

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
           P+   A  A L +  +D +        + L+  L  L   +  +  +R RG +   +   
Sbjct: 332 PLACRAALATLDLFAEDDVLARNARKSARLRAALAPL-AAHPQVRHLRQRGTIFAFDVAL 390

Query: 418 DRQ 420
           D  
Sbjct: 391 DGD 393

Length = 453

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score =  104 bits (261), Expect = 2e-24
 Identities = 98/357 (27%), Positives = 150/357 (42%), Gaps = 49/357 (13%)

Query: 92  YLFDEN-GRRYLDAFGGIATVCCGHCHPYVVDSIVNQ-------IKRIQHSTVLYLNHAI 143
            L D   GRRYLD F   A++  G  HP +VD +  +       + +  +S V     A+
Sbjct: 30  VLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVY--TVAM 87

Query: 144 ADFAEALAS-KMPGNLKVVFFTNSGTEANELAIMMA------------RLYTGCNDIISL 190
           A F +  A       L  +FF   G  A E A+  A                    ++ L
Sbjct: 88  ARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHL 147

Query: 191 RNAYHGNAAGTMGATAQS----------NWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           R A+HG +  T+  T             +W   +    +   L+      V   + E   
Sbjct: 148 RQAFHGRSGYTLSLTNTDPRKTARFPKFDWP-RIDNPKLTFPLDAPNLDQVIALEEEALR 206

Query: 241 KDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
              Q    F    H +A F++E IQG GG     P +L A+     +   L I DEVQ G
Sbjct: 207 ---QARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTG 263

Query: 300 FARTGSHFWGFEAHGVVPDIVTMAK-----GIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
              TG+  W ++  GV PDIV   K     GI  G  +  V     +  V +R N  +T+
Sbjct: 264 VGLTGT-AWAYQQLGVQPDIVAFGKKTQVCGIMAGRRVDEVAD--NVFAVPSRLN--STW 318

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFL 410
           GGN V       +L++I++++L +NA V G++L  RL  L  ++  ++ + RGRG +
Sbjct: 319 GGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLM 375

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score =  102 bits (256), Expect = 1e-23
 Identities = 100/376 (26%), Positives = 144/376 (38%), Gaps = 87/376 (23%)

Query: 92  YLFDEN-GRRYLDAFGGIATVCCGHCHPYVVDS----------IVNQIKRIQHSTVLYLN 140
           YL D   GRRYLD F   A+   G  HP + D            +N+       TV    
Sbjct: 37  YLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEM-- 94

Query: 141 HAIADFAEALAS-KMPGNLKVVFFTNSGTEANELAIMMA-------RLYTGCND-----I 187
              A F +  A       L  +FF + G  A E A+ +A           G +      +
Sbjct: 95  ---ARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKV 151

Query: 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP----YRGVFG---------- 233
           + LR A+HG +  T+  T                  N DP        F           
Sbjct: 152 LHLRGAFHGRSGYTLSLT------------------NTDPRKTARFPKFDWPRIDNPKLR 193

Query: 234 ------ADGEMYAKDVQDLID----FGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYK 282
                    E+ A + + L      F    H +A F++E IQG GG     P +  A+ +
Sbjct: 194 FPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRE 253

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
              +   L I DEVQ G   TG+  W ++  GV PDIV   K       +  ++    + 
Sbjct: 254 LCDEHDALLIFDEVQTGVGLTGT-AWAYQQLGVRPDIVAFGKKT----QVCGIMAGRRVD 308

Query: 343 EVLTRRNYF-------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK 395
           EV    N F       +T+GGN V       +L+VI++D L  NA   G YL  RL  L 
Sbjct: 309 EV--EDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELA 366

Query: 396 DKY-GIIGDVRGRGFL 410
            ++  ++ +VRGRG +
Sbjct: 367 AEFPAVVSNVRGRGLM 382

Length = 443

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 99.1 bits (247), Expect = 1e-22
 Identities = 97/364 (26%), Positives = 155/364 (42%), Gaps = 42/364 (11%)

Query: 75  LFHLYSK-----PLNVV---DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVN 126
           ++H YS      P+  V   DG M  L  ++GRR +D          G+ HP +  +  N
Sbjct: 14  IWHPYSSVTDPIPVYPVERADGVMITL--KDGRRLIDGMSSWWAALHGYNHPRLNAAATN 71

Query: 127 QIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---- 181
           Q+ ++ H       H  A + A+ L   +P +L  +FF +SG+ A E+A+ MA  Y    
Sbjct: 72  QLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAK 131

Query: 182 --TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN---------PDPYRG 230
                    ++R+ YHG+    M              TG+H   N         P P   
Sbjct: 132 GEVQRTKFATIRSGYHGDTWHAMSVCDPV--------TGMHGLFNHSLPVQYFLPQPSIK 183

Query: 231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290
                 +   + +QDL++       A  L   +QG GG+   +P YL    +   + G L
Sbjct: 184 FGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVL 243

Query: 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN 349
            I DE+  GF RTG  F   E  GVVPDI+ + K +  G + L A +TT  IA+ +    
Sbjct: 244 LIFDEIATGFGRTGKLF-ALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGE 302

Query: 350 -----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                +  TF  NP+  A     ++++ +   Q N   + + LK+ L     ++  + +V
Sbjct: 303 AKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAA-EFDSVAEV 361

Query: 405 RGRG 408
           R  G
Sbjct: 362 RVLG 365

Length = 429

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 92.2 bits (229), Expect = 3e-20
 Identities = 84/296 (28%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 95  DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM 154
           D  G+ ++D  G   ++  GH HP + D+I    +R   S  L     I  FAE L S +
Sbjct: 49  DSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAER-GTSYGLTSEQEIL-FAEELFSYL 106

Query: 155 PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214
                 + F +SGTEA   A+ +AR  TG + II     YHG+A   +   + S      
Sbjct: 107 GLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSE---TS 163

Query: 215 VQTGVHHALNPDPYRG---VFGADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGII 270
           + T + H ++ D           +     + V + +     GH VAG + E I    G++
Sbjct: 164 LDT-LTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL-----GHRVAGVIFEPICANMGVV 217

Query: 271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HGVVPDIVTMAKGIGNG 329
              PG++  + ++ ++ G L I DEV  GF R      G  A + V PDI    K +G G
Sbjct: 218 LPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVA--QGGAAAIYHVKPDITVYGKILGGG 274

Query: 330 IPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQK----DKLQN 378
           +P  AVV    I + L          T  GNP+  AAG A + + ++     +L  
Sbjct: 275 LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLST 330

Length = 433

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 88.6 bits (220), Expect = 6e-19
 Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 31/298 (10%)

Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLNHAIADFA 147
           K  Y +D +G  Y+D  G       GH    V+ ++   +K+         L + +A   
Sbjct: 89  KGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLA--- 145

Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + +AR YTG   II     YHG+A      AG+
Sbjct: 146 EMVIDAVP-SVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGS 204

Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +      L   PY  +  A  +++  +          G +A  + E
Sbjct: 205 GVATLGLPDSPGVPKAATSATLTA-PYNDL-EAVKKLFEAN---------KGEIAAVILE 253

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            + G  G I     +L  + +  K+ G L + DEV  GF  A  G+     E  G+ PD+
Sbjct: 254 PVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQ----EYFGITPDL 309

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKD 374
            T+ K IG G+P+GA     EI E++          T  GNP+   AG   LK +Q+ 
Sbjct: 310 TTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQP 367

Length = 474

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 85.6 bits (212), Expect = 5e-18
 Identities = 96/411 (23%), Positives = 158/411 (38%), Gaps = 61/411 (14%)

Query: 47  PFDYSPPPYD----GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           P + + P       GP +   + +          H      +    +  YL D +G R L
Sbjct: 5   PNEPTGPLMKTEIPGPKSKAAMKQLNEVFDARAVHF---LADYEKSRGNYLVDVDGNRLL 61

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAI-----ADFAEALASKM--- 154
           D +  I+++  G+ +P    +++   +  + +T L    A+      D+A+ L   +   
Sbjct: 62  DLYSQISSIPIGYNNP----ALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKV 117

Query: 155 -PGNLKVVFFTNSGTEANELAIMMARLY-------------------------TGCND-- 186
            P     V+   SG++ANELA   A +Y                          G  D  
Sbjct: 118 APKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLS 177

Query: 187 IISLRNAYHGNAAGTMGAT-AQSNWKFNVVQTGVHHALNPD---PYRGVFGADGEMYAKD 242
           I+S + A+HG   G++  T ++   K ++       A  P    P       + +   + 
Sbjct: 178 ILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRC 237

Query: 243 VQDLIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           ++++ D     H  VA  + E IQ  GG    +P +   +    KK     I DEVQ G 
Sbjct: 238 LEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGV 297

Query: 301 ARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
             TG  FW  E   +   PD+VT +K        G     P        R  FNT+ G+P
Sbjct: 298 GATGK-FWAHEHWNLDDPPDMVTFSKKFQTA---GYFFHDPAFRPNKPYR-QFNTWMGDP 352

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRG 408
                   +++ I++  L  N   VG YL   L  L+ KY   I ++RG+G
Sbjct: 353 SRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKG 403

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 85/396 (21%), Positives = 147/396 (37%), Gaps = 72/396 (18%)

Query: 77  HLYSK-----PLN----VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ 127
           H Y+K     P      +  G   +++D +G  Y++   G+  V  GH +P VV+++   
Sbjct: 17  HTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREA 76

Query: 128 IKR---IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG- 183
           ++        + + L     D AE+    + G   +V F  +G++A   A+ +AR YTG 
Sbjct: 77  LQDGCNFTRPSAIEL-----DAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGR 130

Query: 184 -----CND--IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG 236
                C D    S  + + G    + G  A      +V    V    N            
Sbjct: 131 DLVARCADHPFFSTDDWFIGTTPMSAGIPA------SVSALTVTFRYN------------ 172

Query: 237 EMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294
                D+  L        G +A  + E         E   G+L  V +   + G L I D
Sbjct: 173 -----DIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILD 223

Query: 295 EVQAGF---ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV--LTR-- 347
           E+  GF    R     +G     +VPD+    K +GNG  + A+    E  E+  L    
Sbjct: 224 EMITGFRWHMRGAQKLYG-----IVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTD 278

Query: 348 --RNYF--NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD 403
             R +    T G      AA  A + + + + +    H  G+ L   +     ++G+   
Sbjct: 279 RERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDH 338

Query: 404 VRGRGFLLGVEFVT-DRQLKTPAKAETLYIMDKMKG 438
           VR  G    + + T D   +      TL++ + ++ 
Sbjct: 339 VRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRR 374

Length = 431

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202
           + +  E LA  +        F  SGT ANE A++        +++I   N +        
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSR----- 54

Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262
                  W              P P       D      DV  L +     +VA  +   
Sbjct: 55  ------YWV-----AAELAGAKPVPVP---VDDAGYGGLDVAILEELKAKPNVALIVITP 100

Query: 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322
               GG+  L P  L  + K  K+ G L + D   AG A         E      D+VT 
Sbjct: 101 NTTSGGV--LVP--LKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGG---ADVVTF 153

Query: 323 A--KGIGNGIPLGAVVT 337
           +  K +G G   G V+ 
Sbjct: 154 SLHKNLG-GEGGGVVIV 169

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 65/287 (22%), Positives = 101/287 (35%), Gaps = 93/287 (32%)

Query: 161 VFFTNSGTEANELAIMMA-RLYTGCND--------------------IISLRNAYHGNAA 199
           VFF+++G+ A E+A+ MA R +    D                    +++L  +YHG+  
Sbjct: 430 VFFSDNGSTAIEVALKMAFRKF--IVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTL 487

Query: 200 GTMGATA--------QSNW------------------KFNVVQTGVHHALNPDPYRG--- 230
           G M A A        Q  W                  ++N+       +           
Sbjct: 488 GAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWES 547

Query: 231 ---VFGA--DGEMYAKDVQDLID--------FGTSGHVAGFLSES-IQGVGGIIELAPGY 276
              VF    D    AK  +  I+           +GH+A  + E  + G GG++ + P +
Sbjct: 548 RDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLF 607

Query: 277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAV 335
             A+ +  +      I DEV  G  R G     +E  G  PDI   AK +  G+ PL A 
Sbjct: 608 QRALVQVCRSRKIPVIFDEVFTGLWRLG-VESAWELLGCKPDIACYAKLLTGGLVPLAAT 666

Query: 336 VTTPEIAEVLTRRNYFNTFGG---------------NPV-CTAAGHA 366
           + T E+         F  F G               +P+ C AA  A
Sbjct: 667 LATEEV---------FEAFRGPSKLDALLHGHSYTAHPMGCAAAAKA 704

Length = 817

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 65/274 (23%), Positives = 98/274 (35%), Gaps = 39/274 (14%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL V + +     D +G RY D   G      GH    V  ++  Q +R    T +  + 
Sbjct: 58  PLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR--GLTTMLPSE 115

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
             A   E LA +    L       + T+AN   +  AR  TG   I+     YHG     
Sbjct: 116 DAAWVGEELARRF--GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDV 173

Query: 202 M-----GATAQSNWKFNVVQTGVHHALNPDPYRGV-FGADGEMYAKDVQDLIDFGTSGHV 255
                 G   Q   +  ++             R V F         D+  L      G V
Sbjct: 174 FVDLVDGRPVQ---RPGLLGQVHDLTATT---RVVEF--------NDLAALEAALADGDV 219

Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ------AGFARTGSHFWG 309
           A  L+E      G++   PG+  A+ +  ++ G L + DE         G+ R       
Sbjct: 220 AAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTR------- 272

Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAE 343
             AHG+ PD + + K I  G+P      + E+AE
Sbjct: 273 --AHGLEPDFLVVGKPIAGGVPCAVYGFSAELAE 304

Length = 453

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 49/301 (16%), Positives = 86/301 (28%), Gaps = 52/301 (17%)

Query: 119 YVVDSIVNQIKRI--QHSTVLYLN-HAIADFAEALASKMPGNLKV-------VFFTNSGT 168
             + ++    K      +  LY     + +  EALA  +  +  +       V F +   
Sbjct: 16  GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAG 75

Query: 169 EANELAIMMARLYTGCNDIISLRN-AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP 227
              E  I + RL  G   ++       +       G                        
Sbjct: 76  ANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGE-------------------VVR 116

Query: 228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287
           Y      D  +    ++  +   T G+    L  S     G +      L  +    K+ 
Sbjct: 117 YPLYSSNDFHLDFDALEAALKEATEGNK-VVLHTSPHNPTGTV-ATLEELEKLLDLAKEH 174

Query: 288 GGLCIADEVQAGFARTGSHFWG---FEAHGVVPDIV--TMAKGIG-NGIPLGAVVTTPEI 341
             L + DE  AGF              A G    +V  + +K  G  G  +G ++    +
Sbjct: 175 NILLLVDEAYAGFVFGSLDAVATRALLAEG-PNLLVVGSFSKAFGLAGWRVGYILGNAAV 233

Query: 342 AEVLT---RRNYFNTFGGNPVCTAAGHAVLKVIQ-----KDKLQNNAHVVGSYLKERLTA 393
              L    R  Y +T        AA    L V       + +++        YL++ L A
Sbjct: 234 ISQLRKLARPFYSSTHLQ-AAAAAALSDPLLVASELEEMRQRIKERRD----YLRDGLEA 288

Query: 394 L 394
            
Sbjct: 289 A 289

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07046	453	aminotransferase; Validated	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
PLN00144	382	acetylornithine transaminase	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
PRK07505	402	hypothetical protein; Provisional	100.0
PLN02822	481	serine palmitoyltransferase	100.0
PRK13393	406	5-aminolevulinate synthase; Provisional	100.0
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.97
PRK09064	407	5-aminolevulinate synthase; Validated	99.97
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.97
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.97
PRK07179	407	hypothetical protein; Provisional	99.96
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.96
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.95
PLN02955	476	8-amino-7-oxononanoate synthase	99.95
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.95
PRK13392	410	5-aminolevulinate synthase; Provisional	99.94
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.94
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.94
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.92
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.9
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.9
PLN02483	489	serine palmitoyltransferase	99.89
PRK06225	380	aspartate aminotransferase; Provisional	99.89
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.88
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.88
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.88
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.88
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.87
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.87
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.87
PRK07682	378	hypothetical protein; Validated	99.87
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.86
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.86
PRK06108	382	aspartate aminotransferase; Provisional	99.86
PRK07681	399	aspartate aminotransferase; Provisional	99.86
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.86
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.85
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.85
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.85
PRK07324	373	transaminase; Validated	99.85
PRK06207	405	aspartate aminotransferase; Provisional	99.85
PRK08960	387	hypothetical protein; Provisional	99.85
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.84
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.84
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.84
PRK08636	403	aspartate aminotransferase; Provisional	99.84
PRK09148	405	aminotransferase; Validated	99.84
PRK08068	389	transaminase; Reviewed	99.84
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.84
PLN00175	413	aminotransferase family protein; Provisional	99.84
PRK08361	391	aspartate aminotransferase; Provisional	99.84
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.84
PRK06348	384	aspartate aminotransferase; Provisional	99.84
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.84
PRK06290	410	aspartate aminotransferase; Provisional	99.83
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.83
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.83
PRK05764	393	aspartate aminotransferase; Provisional	99.83
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.83
PRK05942	394	aspartate aminotransferase; Provisional	99.83
PRK03321	352	putative aminotransferase; Provisional	99.82
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.82
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.82
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.82
PTZ00433	412	tyrosine aminotransferase; Provisional	99.82
PRK09105	370	putative aminotransferase; Provisional	99.82
PRK09082	386	methionine aminotransferase; Validated	99.82
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.82
PRK07777	387	aminotransferase; Validated	99.82
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.82
PRK12414	384	putative aminotransferase; Provisional	99.82
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.81
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.81
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.81
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.81
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.81
PRK08175	395	aminotransferase; Validated	99.81
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.81
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.81
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.81
PRK07550	386	hypothetical protein; Provisional	99.81
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.8
PLN02187	462	rooty/superroot1	99.8
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.8
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.8
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.8
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.8
PLN02656	409	tyrosine transaminase	99.79
PRK05957	389	aspartate aminotransferase; Provisional	99.79
PRK08912	387	hypothetical protein; Provisional	99.79
PRK05839	374	hypothetical protein; Provisional	99.79
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.79
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.79
PRK07683	387	aminotransferase A; Validated	99.79
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.79
PRK07568	397	aspartate aminotransferase; Provisional	99.79
PRK06107	402	aspartate aminotransferase; Provisional	99.78
PRK08363	398	alanine aminotransferase; Validated	99.78
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.77
PRK07337	388	aminotransferase; Validated	99.77
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.77
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.77
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.77
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.77
PRK06855	433	aminotransferase; Validated	99.77
PRK08354	311	putative aminotransferase; Provisional	99.76
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.76
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.76
PRK09265	404	aminotransferase AlaT; Validated	99.75
PLN02672	1082	methionine S-methyltransferase	99.75
PRK07908	349	hypothetical protein; Provisional	99.75
PTZ00377	481	alanine aminotransferase; Provisional	99.74
PLN02721	353	threonine aldolase	99.74
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.74
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.73
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.73
PRK10534	333	L-threonine aldolase; Provisional	99.72
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.72
PTZ00376	404	aspartate aminotransferase; Provisional	99.72
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.72
PRK06836	394	aspartate aminotransferase; Provisional	99.72
PLN02368	407	alanine transaminase	99.71
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.71
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.71
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.7
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.69
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.69
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.69
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.69
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.69
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.68
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.68
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.68
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.67
PLN02231	534	alanine transaminase	99.67
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.67
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.66
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.66
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.65
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.65
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.64
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.64
PLN02397	423	aspartate transaminase	99.64
PLN02651	364	cysteine desulfurase	99.62
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.62
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.62
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.62
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.61
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.61
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.61
PRK02948	381	cysteine desulfurase; Provisional	99.6
PRK08637	388	hypothetical protein; Provisional	99.6
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.6
PRK09275	527	aspartate aminotransferase; Provisional	99.6
PRK07049	427	methionine gamma-lyase; Validated	99.59
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.59
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.58
PLN02242	418	methionine gamma-lyase	99.58
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.58
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.57
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.57
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.56
PLN02409	401	serine--glyoxylate aminotransaminase	99.56
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.56
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.55
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.55
PRK06767	386	methionine gamma-lyase; Provisional	99.55
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.54
PRK08249	398	cystathionine gamma-synthase; Provisional	99.54
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.54
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.53
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.53
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.53
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.52
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.51
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.51
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.5
PRK08045	386	cystathionine gamma-synthase; Provisional	99.5
PRK06460	376	hypothetical protein; Provisional	99.5
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.49
PRK14012	404	cysteine desulfurase; Provisional	99.49
PRK07582	366	cystathionine gamma-lyase; Validated	99.49
PRK07050	394	cystathionine beta-lyase; Provisional	99.48
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.48
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.48
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.47
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.47
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.47
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.47
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.47
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.47
PRK08574	385	cystathionine gamma-synthase; Provisional	99.46
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.45
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.45
PRK08776	405	cystathionine gamma-synthase; Provisional	99.45
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.45
PRK06234	400	methionine gamma-lyase; Provisional	99.45
PRK07811	388	cystathionine gamma-synthase; Provisional	99.45
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.44
PRK05968	389	hypothetical protein; Provisional	99.44
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.43
PRK08861	388	cystathionine gamma-synthase; Provisional	99.42
PRK07503	403	methionine gamma-lyase; Provisional	99.42
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.41
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.41
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.4
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.39
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.38
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.38
PRK09028	394	cystathionine beta-lyase; Provisional	99.37
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.36
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.35
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.34
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.33
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.32
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.31
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.31
PRK07671	377	cystathionine beta-lyase; Provisional	99.3
PRK05967	395	cystathionine beta-lyase; Provisional	99.28
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.27
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.27
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.26
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.25
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.25
PRK05939	397	hypothetical protein; Provisional	99.25
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.24
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.24
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.24
PLN02509	464	cystathionine beta-lyase	99.24
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.22
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.21
PRK04311	464	selenocysteine synthase; Provisional	99.2
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.18
PRK02769	380	histidine decarboxylase; Provisional	99.17
PRK08114	395	cystathionine beta-lyase; Provisional	99.15
PRK08064	390	cystathionine beta-lyase; Provisional	99.14
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.13
PRK13237	460	tyrosine phenol-lyase; Provisional	99.12
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.1
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.1
PLN03032	374	serine decarboxylase; Provisional	99.09
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.07
PRK06434	384	cystathionine gamma-lyase; Validated	99.07
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.06
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.06
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.02
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	98.99
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	98.99
PRK12566	954	glycine dehydrogenase; Provisional	98.91
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	98.88
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.88
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.87
PRK03080	378	phosphoserine aminotransferase; Provisional	98.85
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	98.85
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	98.84
PLN02724	805	Molybdenum cofactor sulfurase	98.84
PRK05367	954	glycine dehydrogenase; Provisional	98.84
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	98.79
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	98.78
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	98.71
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	98.7
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	98.66
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.64
PLN02880	490	tyrosine decarboxylase	98.6
PLN02263	470	serine decarboxylase	98.52
PLN02271	586	serine hydroxymethyltransferase	98.47
PLN02452	365	phosphoserine transaminase	98.46
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.46
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.45
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.42
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	98.38
PRK12462	364	phosphoserine aminotransferase; Provisional	98.35
PLN02590	539	probable tyrosine decarboxylase	98.32
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.3
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.29
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	98.24
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.22
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.15
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.12
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.12
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.03
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.0
PRK05367	954	glycine dehydrogenase; Provisional	97.97
PRK15029	755	arginine decarboxylase; Provisional	97.94
COG3844	407	Kynureninase [Amino acid transport and metabolism]	97.88
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.68
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	97.36
PRK13578	720	ornithine decarboxylase; Provisional	97.3
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	97.26
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	97.16
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.14
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	97.1
PRK15399	713	lysine decarboxylase LdcC; Provisional	96.89
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	96.84
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	96.79
PRK15400	714	lysine decarboxylase CadA; Provisional	96.69
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	96.34
PRK12566	954	glycine dehydrogenase; Provisional	95.32
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	94.53
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	94.5
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	94.16
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	93.76
KOG0629	510	consensus Glutamate decarboxylase and related prot	93.7
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	93.22
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	92.04
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	92.0
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	90.73
COG4100	416	Cystathionine beta-lyase family protein involved i	82.17

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-99  Score=718.88  Aligned_cols=394  Identities=63%  Similarity=1.037  Sum_probs=378.3

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235           51 SPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (447)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~  130 (447)
                      .|++|.++.+++.+++++++++|.+..++.+|++|++|+|+||||.+|++|||+++|++++++|||||+|++|+.+|+.+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~ls~~~~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~   81 (442)
T KOG1404|consen    2 MPPPYTGPSTDQVLQKRRAFLSPGLTSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKK   81 (442)
T ss_pred             CCCccCCcchhhHHHHhhhcCCcceeccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhh
Confidence            45578888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      ++|++..|.++...+||++|++.+|++++.+||+||||||||+||+|||.||++.+||+++++|||.+..++++|+.+.|
T Consensus        82 l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~  161 (442)
T KOG1404|consen   82 LYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPW  161 (442)
T ss_pred             hEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC--CCeEeecCCCCcCCCCCCC-----hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          211 KFNVVQ--TGVHHALNPDPYRGVFGAD-----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~~~d-----~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      +++++.  +++++.++|++||++|+++     .++|.+++++++....++.+|+||+|||||.||++.+|++||++++++
T Consensus       162 k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~  241 (442)
T KOG1404|consen  162 KQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKV  241 (442)
T ss_pred             cccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHH
Confidence            998876  5999999999999999987     567889999999988888999999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCc-ccccCCCChHHHH
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFGGNPVCTA  362 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~-~~~T~~~np~a~a  362 (447)
                      ||++|+++|+||||||||||| +||++|.+|+.|||+||+|+||||+|||||++++||++.+.+.. |++||+|||++|+
T Consensus       242 v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~a  320 (442)
T KOG1404|consen  242 VRKRGGLFIADEVQTGFGRTG-HMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACA  320 (442)
T ss_pred             HHHcCCEEEehhhhhcccccc-ccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCchhHH
Confidence            999999999999999999999 99999999999999999999999999999999999999999876 9999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCC-CCCCCCHHHHHHHHHHHHhCCc
Q 013235          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR-QLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       363 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~-~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +++++|++|+++++++++..+|.+|+++|.++.++|++|++|||+|||+|+|+++++ ..+.|+......+.++|+++||
T Consensus       321 vg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gv  400 (442)
T KOG1404|consen  321 VGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGV  400 (442)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCe
Confidence            999999999999999999999999999999999999999999999999999999998 5566777778889999999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      +++.
T Consensus       401 lvg~  404 (442)
T KOG1404|consen  401 LVGK  404 (442)
T ss_pred             eeec
Confidence            9964

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-92  Score=704.80  Aligned_cols=388  Identities=40%  Similarity=0.625  Sum_probs=353.9

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 013235           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (447)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~  134 (447)
                      .++++..++++++.+++.++...+ ..|+++++++|+||||+|||+||||++|+++.++|||||+|++|+++|++++.|+
T Consensus        13 ~~~~~~~~~~~r~~~~~~r~~~~~-~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~   91 (447)
T COG0160          13 APGPKALELIERREEALARSYGRF-RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHT   91 (447)
T ss_pred             CCCcchHHHHHHHHHHhccccccc-cCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcc
Confidence            346677889999999888875542 5699999999999999999999999999999999999999999999999999998


Q ss_pred             cccccc-hHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc-c
Q 013235          135 TVLYLN-HAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW-K  211 (447)
Q Consensus       135 ~~~~~~-~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~-~  211 (447)
                      ...+.+ +...+++|+|.+.+|. ..++++|+|||+||||+|||+||.+|++..||+|.++|||+|.+++++|+.... +
T Consensus        92 ~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~  171 (447)
T COG0160          92 HTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYK  171 (447)
T ss_pred             cCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccc
Confidence            887765 9999999999999998 688999999999999999999999999999999999999999999999986543 3


Q ss_pred             cccc--CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHc--cCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          212 FNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      ..+.  ..+++++|+|++||++|+.+.+    ...+.+++.+..  ..++++||||+|||||+||++++|++||++|+++
T Consensus       172 ~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~  251 (447)
T COG0160         172 AGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKL  251 (447)
T ss_pred             cCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHH
Confidence            3332  2569999999999999875422    234556665543  3467999999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHH
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aa  363 (447)
                      |+|||++||+||||||||||| +||++|++|+.||||||||++|+|+|+|+|++++++++ .....|.+||+|||++||+
T Consensus       252 ~~~~gillI~DEVQtG~GRTG-~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aa  329 (447)
T COG0160         252 CREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAA  329 (447)
T ss_pred             HHHcCCEEEEeccccCCCccc-cchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHH
Confidence            999999999999999999999 89999999999999999999999999999999999999 6667799999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       364 ala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      |+++|++|++++|++++.++|++|+++|.+|+++|+.|++|||+|+|+||||++++.++.|+.+.+.+++++|+++|+++
T Consensus       330 a~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil  409 (447)
T COG0160         330 ALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLL  409 (447)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ec
Q 013235          444 FS  445 (447)
Q Consensus       444 ~~  445 (447)
                      .+
T Consensus       410 ~~  411 (447)
T COG0160         410 LT  411 (447)
T ss_pred             ec
Confidence            53

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-90  Score=671.92  Aligned_cols=357  Identities=37%  Similarity=0.626  Sum_probs=332.1

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~  138 (447)
                      .++...+...+|+.+.   |.+.|+++++|+|+|+||.+||+||||.+|+++++||||||+|++|+++|+++++|.++.|
T Consensus         5 ~~~~~~~~~~~~~~~~---Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~   81 (404)
T COG4992           5 LTAATIELFMKYLMPT---YGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLF   81 (404)
T ss_pred             cHHHHHHHHHHhhhcc---cCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccccc
Confidence            3456677777787666   5567899999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC---CCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~---~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++...+|+++|++..| ..++|||+|||+||||+|||+||.|++   +.+||+|.++|||+|++++++|+++.|+..+.
T Consensus        82 ~~~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~  160 (404)
T COG4992          82 YNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG  160 (404)
T ss_pred             CChHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence            99999999999999998 689999999999999999999999998   78999999999999999999999998887664


Q ss_pred             C--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          216 Q--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       216 ~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                      +  +++.++|+         +|    +++++++++.    ++||||+|||||+||+++++++||+++++||++||+|||+
T Consensus       161 Pl~~g~~~vpf---------nD----i~al~~ai~~----~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~  223 (404)
T COG4992         161 PLLPGFRHVPF---------ND----IEALEAAIDE----DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLIL  223 (404)
T ss_pred             CCCCCceecCC---------CC----HHHHHHHhcc----CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEE
Confidence            3  68888875         34    7888888863    8999999999999999999999999999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~  373 (447)
                      ||||||+|||| ++|++||+|+.|||+|++|+||||+||||+++++++++.+..+.|++||+|||++||++.++|+++.+
T Consensus       224 DEVQtG~GRTG-k~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~  302 (404)
T COG4992         224 DEVQTGLGRTG-KLFAYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE  302 (404)
T ss_pred             eccccCCCccc-hHHHHHHhCCCCCEEEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc
Confidence            99999999999 89999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       374 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.++++++|++|+++|+++..+|+++.+|||+|||+|++|..+.        .+..+++.|+++||++..
T Consensus       303 e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~--------~a~~~~~~~~~~gvL~~~  366 (404)
T COG4992         303 EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY--------RARDIVRALREEGVLVLP  366 (404)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc--------cHHHHHHHHHHCCeEEec
Confidence            9999999999999999999999999999999999999999997542        256799999999999864

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2e-80  Score=616.64  Aligned_cols=380  Identities=34%  Similarity=0.512  Sum_probs=336.7

Q ss_pred             HHHhhhcCCccccc--cCC-CeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccc
Q 013235           65 AKRKTFLSPSLFHL--YSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLN  140 (447)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~-p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~  140 (447)
                      +...+|++......  +.. |.+|++|+|.||||.|||+|||.+||+|++++||+||+|.+|+.+|++++.|... .+.+
T Consensus         7 ~~d~~~~whP~t~~~~~~~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~   86 (449)
T COG0161           7 AADLSHLWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTH   86 (449)
T ss_pred             hhhhhheeccccccccccccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCC
Confidence            33667776543322  222 8999999999999999999999999999999999999999999999999998754 4566


Q ss_pred             hHHHHHHHHHHHhCC-CCCceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcc-c
Q 013235          141 HAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWK-F  212 (447)
Q Consensus       141 ~~~~elae~L~~~~~-~~~~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~-~  212 (447)
                      .+..+|+++|+++.| +++++|||++|||||||.|||||+.|.      +|+++|+.+++|||.|.+++|+++..... .
T Consensus        87 ~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~  166 (449)
T COG0161          87 EPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHA  166 (449)
T ss_pred             chHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhh
Confidence            779999999999999 669999999999999999999999883      46779999999999999999999943322 2


Q ss_pred             --cccCCCeEeecCCCCcCCCCCC-ChH---HHHHHHHHHHHccCCCCeEEEEEccccCC-CceeeCCCChHHHHHHHHH
Q 013235          213 --NVVQTGVHHALNPDPYRGVFGA-DGE---MYAKDVQDLIDFGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIK  285 (447)
Q Consensus       213 --~~~~~g~~~~~~p~~~~~~~~~-d~~---~~~~~le~~i~~~~~~~~aavi~Epi~~~-gG~~~~~~~~l~~l~~l~~  285 (447)
                        .....++.+++.|+.|+.+... +.+   .++++||++|.++++++|||||+||+++. ||+++||++||++++++|+
T Consensus       167 ~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~  246 (449)
T COG0161         167 FYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICD  246 (449)
T ss_pred             hccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHH
Confidence              2234678899999988876633 333   66889999999988899999999997777 9999999999999999999


Q ss_pred             HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-----cccccCCCChH
Q 013235          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPV  359 (447)
Q Consensus       286 ~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-----~~~~T~~~np~  359 (447)
                      +||+|||+|||.||||||| ++|+++++|++|||+|+||+|+|| +|+|+++++++|.+.+...     .|+.||+|||+
T Consensus       247 ky~ILlI~DEV~tGFGRTG-~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPl  325 (449)
T COG0161         247 KYGILLIADEVATGFGRTG-KMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPL  325 (449)
T ss_pred             HcCcEEEeecceeCCCcCc-hhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHH
Confidence            9999999999999999999 799999999999999999999999 5999999999999998764     48899999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHH-HHHHHHHHHHh
Q 013235          360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA-ETLYIMDKMKG  438 (447)
Q Consensus       360 a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~-~~~~~~~~l~~  438 (447)
                      +||+|+++|++++++++++++++++.+|+++|+++..+++.+++|||.|+|.+||++.++.++.|... ...++.+.+++
T Consensus       326 acAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e  405 (449)
T COG0161         326 ACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALE  405 (449)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999997777899999999999999999999988877633 35678889999


Q ss_pred             CCceeec
Q 013235          439 ICALFFS  445 (447)
Q Consensus       439 ~Gvlv~~  445 (447)
                      +||++++
T Consensus       406 ~Gl~iRp  412 (449)
T COG0161         406 RGLLIRP  412 (449)
T ss_pred             CCeEEee
Confidence            9999985

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-77  Score=618.29  Aligned_cols=383  Identities=30%  Similarity=0.472  Sum_probs=329.5

Q ss_pred             HHHHHHHhhhcCCccccc--c--CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           61 DEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      ++++++.+++++.....+  +  ..|+++++++|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~   83 (459)
T PRK05965          4 NSLIELDRAHLIHPVASYRGHEARGVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATG   83 (459)
T ss_pred             HHHHHhhhhccccccccccccccCCCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCccc
Confidence            345555555654333211  1  247899999999999999999999999999999999999999999999999876544


Q ss_pred             --cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCC
Q 013235          137 --LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (447)
Q Consensus       137 --~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~  208 (447)
                        .+.++...+|+++|++.+|.++++|+|+||||||||+|||+||.|      ++|.+||+++++|||++.+++++++..
T Consensus        84 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~  163 (459)
T PRK05965         84 YFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALP  163 (459)
T ss_pred             ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCc
Confidence              356888999999999999877899999999999999999999998      458899999999999999999998866


Q ss_pred             Ccccccc--CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          209 NWKFNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       209 ~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      .++..+.  ..++..++.|++++.++++|.+    .++++++++++...++++||||+||+||++|++++|++||++|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~  243 (459)
T PRK05965        164 AFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE  243 (459)
T ss_pred             hhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHH
Confidence            5554332  2456677888888877766542    345678888876555799999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcC-------CcccccC
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR-------RNYFNTF  354 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~-------~~~~~T~  354 (447)
                      +|++||++||+||||||||||| ++|+++++|++|||+|+||+|+||+ |+|++++++++++.+..       ..|++||
T Consensus       244 lc~~~gillI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~  322 (459)
T PRK05965        244 ACRELGILFVADEVITGFGRTG-PLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTY  322 (459)
T ss_pred             HHHHcCCEEEEechhccCccCc-hhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCC
Confidence            9999999999999999999999 7999999999999999999999995 99999999999988753       1478999


Q ss_pred             CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCC---CHHHHHH
Q 013235          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAETLY  431 (447)
Q Consensus       355 ~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p---~~~~~~~  431 (447)
                      +|||++|++++++|++++++++.++++++|++|+++|+++. +++.+++|||.|+|++|||++++..+.|   ......+
T Consensus       323 ~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~  401 (459)
T PRK05965        323 SAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADR  401 (459)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHH
Confidence            99999999999999999999999999999999999999986 6899999999999999999876544433   1234677


Q ss_pred             HHHHHHhCCceeec
Q 013235          432 IMDKMKGICALFFS  445 (447)
Q Consensus       432 ~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++||+++.
T Consensus       402 i~~~~~~~Gll~~~  415 (459)
T PRK05965        402 IFDRAYANGLVFRA  415 (459)
T ss_pred             HHHHHHhCCeEEEe
Confidence            89999999999864

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=2.9e-77  Score=615.12  Aligned_cols=385  Identities=31%  Similarity=0.490  Sum_probs=335.0

Q ss_pred             CHHHHHHHHhhhcCCcccccc-CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~  137 (447)
                      ++++++++.++++++....+. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~   85 (451)
T PRK07678          6 QTDELLAKDEQYVWHGMKPYNPNATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLT   85 (451)
T ss_pred             CHHHHHHHhhcccCCCccccccCCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccc
Confidence            466778777777655433233 2489999999999999999999999999999999999999999999999998776555


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      +.++...+|+++|++.+|. .++|+|+||||||||.|||+||.|+      +|.+||+++++|||++.+++++++...++
T Consensus        86 ~~~~~~~~lae~l~~~~~~-~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~  164 (451)
T PRK07678         86 QSHEPAIKLAEKLNEWLGG-EYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRK  164 (451)
T ss_pred             cCCHHHHHHHHHHHHhCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccc
Confidence            6788899999999999986 3689999999999999999999996      57899999999999999999998876554


Q ss_pred             cccc--CCCeEeecCCCCcCCCCCCC----hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH
Q 013235          212 FNVV--QTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (447)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d----~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~  285 (447)
                      ..+.  .+++..++.|+.++.+|+.+    ...+++.++++++...++++||||+||+||++|+++||++||++|+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~  244 (451)
T PRK07678        165 YKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQ  244 (451)
T ss_pred             cccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence            4332  36788888888888776432    12345667888864445799999999999999999999999999999999


Q ss_pred             HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC------cccccCCCCh
Q 013235          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNP  358 (447)
Q Consensus       286 ~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~------~~~~T~~~np  358 (447)
                      +||+++|+||||||||||| ++|+++++|++|||+||||+|||| +|+|++++++++++.+...      .|++||+|||
T Consensus       245 ~~g~llI~DEV~tGfGRtG-~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp  323 (451)
T PRK07678        245 KHGALLISDEVICGFGRTG-KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNP  323 (451)
T ss_pred             HcCCEEEEeehhhcCCcCc-hhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCH
Confidence            9999999999999999999 799999999999999999999999 6999999999999988642      3789999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCC-CHHHHHHHHHHHH
Q 013235          359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMK  437 (447)
Q Consensus       359 ~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p-~~~~~~~~~~~l~  437 (447)
                      ++|++|+++|++++++++.++++++|++|+++|+++.++++.+.+|||.|+|++|+++++..++.| +...+.++++.|+
T Consensus       324 ~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~  403 (451)
T PRK07678        324 AACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACK  403 (451)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999998889999999999999999999876554444 3455778999999


Q ss_pred             hCCceeec
Q 013235          438 GICALFFS  445 (447)
Q Consensus       438 ~~Gvlv~~  445 (447)
                      ++||++..
T Consensus       404 ~~Gv~~~~  411 (451)
T PRK07678        404 EKGLIIGK  411 (451)
T ss_pred             HCCcEEee
Confidence            99999853

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=5.2e-77  Score=614.41  Aligned_cols=385  Identities=30%  Similarity=0.442  Sum_probs=330.3

Q ss_pred             CHHHHHHHHhhhcCCcccc---cc---CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           59 SADEILAKRKTFLSPSLFH---LY---SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~---~~---~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      +++++.++.+++++.....   +.   ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~   83 (461)
T PRK07482          4 KIDELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELA   83 (461)
T ss_pred             cHHHHHHhhhhhccCCcccccccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcC
Confidence            5667777666665443221   11   23899999999999999999999999999999999999999999999999986


Q ss_pred             cccc--cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhc
Q 013235          133 HSTV--LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGA  204 (447)
Q Consensus       133 ~~~~--~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~  204 (447)
                      |...  .+.++...+|+++|++..|.++++|+|+||||||||+|||+||.++      +|++||+++++|||++.+++++
T Consensus        84 ~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~  163 (461)
T PRK07482         84 YYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSL  163 (461)
T ss_pred             ccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhc
Confidence            5432  4678999999999999998778999999999999999999999873      5889999999999999999999


Q ss_pred             cCCCCcccccc--CCCeEeecCCCCcCCCCCC-Ch----HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          205 TAQSNWKFNVV--QTGVHHALNPDPYRGVFGA-DG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       205 t~~~~~~~~~~--~~g~~~~~~p~~~~~~~~~-d~----~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      ++.+.++..+.  ..++.+++.|+.+++++.. ..    ..+++.+++++....++++||||+||+||++|++++|++||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl  243 (461)
T PRK07482        164 TGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYW  243 (461)
T ss_pred             cCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHH
Confidence            98766554332  3577788888776654311 11    22467788888654557899999999999999999999999


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcC-------Cc
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR-------RN  349 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~-------~~  349 (447)
                      ++|+++|++||++||+||||||||||| ++|+++++|++|||+|+||+|+||+ |+|++++++++++.+..       ..
T Consensus       244 ~~lr~lc~~~giLlI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~  322 (461)
T PRK07482        244 PAIQAVLKKYDILLIADEVVTGFGRLG-SMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIG  322 (461)
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCcCc-chhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccc
Confidence            999999999999999999999999999 7999999999999999999999996 99999999999988752       14


Q ss_pred             ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCH---
Q 013235          350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK---  426 (447)
Q Consensus       350 ~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~---  426 (447)
                      |.+||+|||++|++|+++|++++++++.++++++|++|+++|+++.++++.+.+|||.|+|++|||++++.++.|..   
T Consensus       323 h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~  402 (461)
T PRK07482        323 HGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPAL  402 (461)
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhh
Confidence            77999999999999999999999999999999999999999999999999999999999999999987654444421   


Q ss_pred             HHHHHHHHHHHhCCceee
Q 013235          427 AETLYIMDKMKGICALFF  444 (447)
Q Consensus       427 ~~~~~~~~~l~~~Gvlv~  444 (447)
                      ..+.++++.|+++||++.
T Consensus       403 ~~~~~i~~~~~~~Gvl~~  420 (461)
T PRK07482        403 KIGPQVSAAALERGVIAR  420 (461)
T ss_pred             HHHHHHHHHHHHCCcEEe
Confidence            235788999999999984

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-76  Score=608.90  Aligned_cols=384  Identities=33%  Similarity=0.513  Sum_probs=332.9

Q ss_pred             HHHHHHHHhhhcCCccccc-cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235           60 ADEILAKRKTFLSPSLFHL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~  138 (447)
                      +.+.++...+++++..... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+....+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~   92 (451)
T PRK06062         13 GARAYALDRAHVFHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAH   92 (451)
T ss_pred             hHHHHHhhhhhccccccccccCCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCcc
Confidence            3455666566655443321 235899999999999999999999999999999999999999999999999988766677


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc-CC
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QT  217 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~-~~  217 (447)
                      .++...+|+++|++..|.++++|+|+||||||||.|||+||.+|+|.+||+++++|||++.+++++++.+.++...+ ..
T Consensus        93 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~  172 (451)
T PRK06062         93 ANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRA  172 (451)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCC
Confidence            89999999999999998778899999999999999999999999999999999999999999999987654332222 25


Q ss_pred             CeEeecCCCCcCCCCC--CCh---HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          218 GVHHALNPDPYRGVFG--ADG---EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~--~d~---~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                      ++..++.|++++.+|.  +|.   ..++++++++++...++++|+||+||+||++|+++||++||++|+++|++||++||
T Consensus       173 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI  252 (451)
T PRK06062        173 GVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLI  252 (451)
T ss_pred             CCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            7788888888887763  332   23467788888754457899999999999999999999999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~  369 (447)
                      +|||||||||+| .+|+++++|+.|||+||||+||||+ |+|++++++++++.+...  .|.+||+|||++|++++++|+
T Consensus       253 ~DEV~tGfGRtG-~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~  331 (451)
T PRK06062        253 ADEVMAGFGRTG-KWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATIN  331 (451)
T ss_pred             eeccccCCCcCc-HHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            999999999999 7999999999999999999999995 999999999999988643  477899999999999999999


Q ss_pred             HHhhhhHHHHHHHHH-HHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC------HHHHHHHHHHHHhCCce
Q 013235          370 VIQKDKLQNNAHVVG-SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA------KAETLYIMDKMKGICAL  442 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g-~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~------~~~~~~~~~~l~~~Gvl  442 (447)
                      +|+++++.++++++| ++|+++|+++.++++.+.+|||.|+|++|+|++++.++.|.      ...+.++++.|+++||+
T Consensus       332 ~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl  411 (451)
T PRK06062        332 AMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLL  411 (451)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcE
Confidence            999999999999999 69999999999999999999999999999998654433331      12456899999999999


Q ss_pred             ee
Q 013235          443 FF  444 (447)
Q Consensus       443 v~  444 (447)
                      +.
T Consensus       412 ~~  413 (451)
T PRK06062        412 PF  413 (451)
T ss_pred             Ee
Confidence            75

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=7.7e-76  Score=605.24  Aligned_cols=384  Identities=29%  Similarity=0.455  Sum_probs=324.1

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVL  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~~  137 (447)
                      +.++++++..++...........|+++++|+|+||||.|||+||||++|++++++||+||+|++|+++|+++.. +....
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~  102 (464)
T PRK06938         23 SNSPLLERQSRRESNARSYPRRIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLD  102 (464)
T ss_pred             cHHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccc
Confidence            34567777655532211111245899999999999999999999999999999999999999999999997533 33334


Q ss_pred             ccchHHHHHHHHHHHhCCCCC---ceEEEc-CCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          138 YLNHAIADFAEALASKMPGNL---KVVFFT-NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~---~~v~~~-~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      +.++...+|+++|.+.+|..+   ++++|+ ||||||||.|||+||.+|+|++||+++++|||++.+++++++...++..
T Consensus       103 ~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~  182 (464)
T PRK06938        103 LTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKP  182 (464)
T ss_pred             cCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCcccccc
Confidence            678999999999999998654   256665 8999999999999999999999999999999999999999886544433


Q ss_pred             cc--CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH
Q 013235          214 VV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (447)
Q Consensus       214 ~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~  285 (447)
                      +.  .+++.++++|+.++.+++.+.+    .+++.++++++..  .++++||||+||+||++|+++||++||++|+++|+
T Consensus       183 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~  262 (464)
T PRK06938        183 LGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE  262 (464)
T ss_pred             CCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence            22  2467788888877776654322    3467788888642  23589999999999999999999999999999999


Q ss_pred             HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       286 ~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal  365 (447)
                      +||++||+||||||||||| ++|+++++|++|||+|+||+|+||+|+|++++++++ +.+....|.+||+|||++|++|+
T Consensus       263 ~~giLlI~DEV~tGfGRtG-~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~  340 (464)
T PRK06938        263 EAGIPLIVDEIQSGFGRTG-KMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGS  340 (464)
T ss_pred             HcCCEEEEeccccCCCcCc-HHHHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHH
Confidence            9999999999999999999 799999999999999999999999999999999886 66655568899999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCC-----CC-CHHHHHHHHHHHHhC
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TP-AKAETLYIMDKMKGI  439 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~-----~p-~~~~~~~~~~~l~~~  439 (447)
                      ++|+++++++++++++++|++|+++|+++.++++.+.+|||.|+|++++|++++.++     .| +...+..+++.|+++
T Consensus       341 a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (464)
T PRK06938        341 ATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRR  420 (464)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999998654321     22 234567789999999


Q ss_pred             Cceee
Q 013235          440 CALFF  444 (447)
Q Consensus       440 Gvlv~  444 (447)
                      ||++.
T Consensus       421 Gll~~  425 (464)
T PRK06938        421 GLILE  425 (464)
T ss_pred             CeEEe
Confidence            99985

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=4.4e-76  Score=606.06  Aligned_cols=364  Identities=32%  Similarity=0.559  Sum_probs=321.6

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc--cccchHHHHHHHHHHHhC-CCC
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--LYLNHAIADFAEALASKM-PGN  157 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~--~~~~~~~~elae~L~~~~-~~~  157 (447)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+++|++++.|.+.  .+.++...+|+++|++.+ |.+
T Consensus        24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~  103 (449)
T PRK07481         24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG  103 (449)
T ss_pred             CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC
Confidence            58999999999999999999999999999999999999999999999999876543  357899999999999998 455


Q ss_pred             CceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcC
Q 013235          158 LKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYR  229 (447)
Q Consensus       158 ~~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~  229 (447)
                      +++|+|++|||||||+|||+||.|+      +|.+||+++++|||++.+++++++...++..+.  .+++..++.|+.++
T Consensus       104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (449)
T PRK07481        104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYR  183 (449)
T ss_pred             CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccc
Confidence            7899999999999999999999985      688999999999999999999988665543322  36788888898888


Q ss_pred             CCCC-CChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC
Q 013235          230 GVFG-ADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG  304 (447)
Q Consensus       230 ~~~~-~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G  304 (447)
                      .+|+ .|.+.    +.+.+|+++....++++||||+||+||++|++++|++||++|+++|++||+++|+|||||||||||
T Consensus       184 ~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG  263 (449)
T PRK07481        184 NPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG  263 (449)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc
Confidence            8886 34333    345567777644467999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-------cccccCCCChHHHHHHHHHHHHHhhhhH
Q 013235          305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQKDKL  376 (447)
Q Consensus       305 ~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-------~~~~T~~~np~a~aaala~L~~i~~~~l  376 (447)
                       ++|+++++|++|||+|+||+++|| +|+|++++++++++.+...       .|.+||+|||++|++|+++|++++++++
T Consensus       264 -~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l  342 (449)
T PRK07481        264 -SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDL  342 (449)
T ss_pred             -hhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence             799999999999999999999999 5999999999999988532       4779999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC---HHHHHHHHHHHHhCCceeec
Q 013235          377 QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       377 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~---~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .++++++|++|+++|+++.++++++.+|||.|+|++++|++++.++.|.   .....++.+.|+++||++.+
T Consensus       343 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~  414 (449)
T PRK07481        343 PANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRP  414 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEe
Confidence            9999999999999999999999999999999999999998665444342   23567789999999999864

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-75  Score=601.65  Aligned_cols=364  Identities=32%  Similarity=0.527  Sum_probs=318.5

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCC
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~  158 (447)
                      ..|+++++|+|+||||.|||+||||++|++++++||+||+|.+|+++|++++.+... .+.++...+|+++|++.+|.++
T Consensus        11 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~   90 (443)
T PRK07483         11 ATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGL   90 (443)
T ss_pred             CCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            458999999999999999999999999999999999999999999999999865443 3568889999999999998778


Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCC
Q 013235          159 KVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRG  230 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~  230 (447)
                      ++|+|+||||||||+|||+||.+      ++|.+||+|+++|||++.+++++++...++..+.  ..++.+++.|..|+.
T Consensus        91 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~  170 (443)
T PRK07483         91 EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRE  170 (443)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccc
Confidence            89999999999999999999998      6789999999999999999999998654443322  246677777766765


Q ss_pred             CCCC-C----hHHHHHHHHHHHHccCCCCeEEEEEccccC-CCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC
Q 013235          231 VFGA-D----GEMYAKDVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG  304 (447)
Q Consensus       231 ~~~~-d----~~~~~~~le~~i~~~~~~~~aavi~Epi~~-~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G  304 (447)
                      .+.. +    .+.+++++++++....++++||||+||||| .+|++++|++||++|+++|++||+++|+|||||||||||
T Consensus       171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG  250 (443)
T PRK07483        171 QRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG  250 (443)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc
Confidence            4321 1    122456777767654457999999999999 589999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcCC----cccccCCCChHHHHHHHHHHHHHhhhhHHHH
Q 013235          305 SHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN  379 (447)
Q Consensus       305 ~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~~----~~~~T~~~np~a~aaala~L~~i~~~~l~~~  379 (447)
                       ++|+++++|++|||+|+||+|+||+ |+|++++++++++.+...    .|.+||+|||++|++++++|++|+++++.++
T Consensus       251 -~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~  329 (443)
T PRK07483        251 -TLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLAN  329 (443)
T ss_pred             -HHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence             7999999999999999999999996 999999999999988643    4779999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC---HHHHHHHHHHHHhCCceee
Q 013235          380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKGICALFF  444 (447)
Q Consensus       380 ~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~---~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++++|++|+++|+++.++++.+.+|||.|+|++|+|++++.++.|.   ......+.+.|+++||++.
T Consensus       330 ~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~  397 (443)
T PRK07483        330 VRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVY  397 (443)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEE
Confidence            9999999999999999999999999999999999998765444442   2345678999999999985

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-75  Score=601.62  Aligned_cols=382  Identities=32%  Similarity=0.498  Sum_probs=322.7

Q ss_pred             HHHHHHHHhhhcCCccccc-cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-cccc
Q 013235           60 ADEILAKRKTFLSPSLFHL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVL  137 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~  137 (447)
                      .++++++..++.... ..+ ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|+++..+ .+..
T Consensus        19 ~~~~~~~~~~~~~~~-~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~   97 (459)
T PRK06931         19 NETYLARQAEFESNV-RSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLD   97 (459)
T ss_pred             hHHHHHHHHhhhhhc-cccccCCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccc
Confidence            446677666553221 112 2458999999999999999999999999999999999999999999999987432 2234


Q ss_pred             ccchHHHHHHHHHHHhCCCCC---ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          138 YLNHAIADFAEALASKMPGNL---KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~---~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      +.++...+|+++|++.+|...   ..+||+||||||||.|||+||.+|+|.+||+++++|||++.+++++++...++..+
T Consensus        98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~  177 (459)
T PRK06931         98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV  177 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCC
Confidence            578888999999999998542   35677799999999999999999999999999999999999999998866554333


Q ss_pred             c--CCCeEeecCCCCcCCCCCCCh----HHHHHHHHHHHHc--cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235          215 V--QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (447)
Q Consensus       215 ~--~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~  286 (447)
                      .  .+++.++++|+.++.+|+...    +.+.+.+++.++.  ..++++||||+||+||++|++++|++||++|+++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~  257 (459)
T PRK06931        178 NGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK  257 (459)
T ss_pred             CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence            2  367888999999988886332    2233334555542  1346899999999999999999999999999999999


Q ss_pred             hCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHH
Q 013235          287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA  366 (447)
Q Consensus       287 ~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala  366 (447)
                      ||+++|+||||||||||| ++|+++++|++|||+|+||+|+||+|+|++++++++ +.+....|.+||+|||++|++|++
T Consensus       258 ~g~LlI~DEV~tGfGRtG-~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala  335 (459)
T PRK06931        258 HGILLIVDEVQAGFARTG-KMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLT  335 (459)
T ss_pred             cCCEEEEecchhcCCcCc-hHHHhhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999999 799999999999999999999999999999988775 767656688999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCC-----CC-CHHHHHHHHHHHHhCC
Q 013235          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TP-AKAETLYIMDKMKGIC  440 (447)
Q Consensus       367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~-----~p-~~~~~~~~~~~l~~~G  440 (447)
                      +|++++++++.++++++|++|+++|+++.++++.+.+|||.|+|++|||++++..+     .+ +...+.++++.|+++|
T Consensus       336 ~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  415 (459)
T PRK06931        336 TLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENG  415 (459)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999998654321     12 2345678899999999


Q ss_pred             ceee
Q 013235          441 ALFF  444 (447)
Q Consensus       441 vlv~  444 (447)
                      |++.
T Consensus       416 vl~~  419 (459)
T PRK06931        416 LLLE  419 (459)
T ss_pred             cEEe
Confidence            9985

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.4e-75  Score=598.54  Aligned_cols=386  Identities=30%  Similarity=0.466  Sum_probs=331.8

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 013235           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (447)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~  134 (447)
                      .+.+++.+++++..+++.+... ....|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+++|++++.+.
T Consensus        10 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~   88 (457)
T PRK05639         10 PPGPKAKELIEREKRVLSPGIG-VKLFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHS   88 (457)
T ss_pred             CCCCCHHHHHHHHHHhhccccC-cCCCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhcccc
Confidence            3456777888777777655431 123589999999999999999999999999999999999999999999999998765


Q ss_pred             ccc-ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCC-CCccc
Q 013235          135 TVL-YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKF  212 (447)
Q Consensus       135 ~~~-~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~-~~~~~  212 (447)
                      ... +.++...+|+++|++.+|.+.++|+|+||||||||+|+|+||.+|+|.+||+++++|||++.+++++++. ..++.
T Consensus        89 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~  168 (457)
T PRK05639         89 MIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKR  168 (457)
T ss_pred             ccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCccccc
Confidence            443 3467889999999999987678999999999999999999999999999999999999999999998864 22333


Q ss_pred             ccc--CCCeEeecCCCCcCCCCCC----ChHH----HHHHHHHHHHc--cCCCCeEEEEEccccCCCceeeCCCChHHHH
Q 013235          213 NVV--QTGVHHALNPDPYRGVFGA----DGEM----YAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAV  280 (447)
Q Consensus       213 ~~~--~~g~~~~~~p~~~~~~~~~----d~~~----~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l  280 (447)
                      .+.  .+++..+++|++++.+|..    +.+.    +++.+++.+..  ..++++||||+||+||++|+++||++||++|
T Consensus       169 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l  248 (457)
T PRK05639        169 GFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKEL  248 (457)
T ss_pred             CCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHH
Confidence            222  2578888998888766542    2222    34556666532  1357999999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHH
Q 013235          281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC  360 (447)
Q Consensus       281 ~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a  360 (447)
                      +++|++||+++|+|||||||||+| .+|+++++|+.|||+||||+|+||+|+|++++++++++ +....+.+||++||++
T Consensus       249 ~~lc~~~g~llI~DEv~tG~GrtG-~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~-~~~~~~~~T~~g~p~~  326 (457)
T PRK05639        249 KKLLDEHGILLVMDEVQTGIGRTG-KWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMD-LTSGSALLTPAANPVI  326 (457)
T ss_pred             HHHHHHcCCEEEEechhhccCcCc-hHHHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHh-hcCCCcccCCCcCHHH
Confidence            999999999999999999999999 79999999999999999999999999999999999999 4344577999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235          361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       361 ~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~G  440 (447)
                      |++++++|++++++++.++++++|++|+++|+++.++++++.+|||.|+|+++++.++..  .|+...+..+++.|+++|
T Consensus       327 ~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~--~~~~~~~~~~~~~~~~~G  404 (457)
T PRK05639        327 SAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENG--KPDPELTGKICWRAFELG  404 (457)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCC--CCCHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999986532  345556778999999999


Q ss_pred             ceeec
Q 013235          441 ALFFS  445 (447)
Q Consensus       441 vlv~~  445 (447)
                      |++..
T Consensus       405 v~~~~  409 (457)
T PRK05639        405 LILPS  409 (457)
T ss_pred             eEEee
Confidence            99863

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=1.6e-75  Score=597.88  Aligned_cols=362  Identities=32%  Similarity=0.535  Sum_probs=312.5

Q ss_pred             HHHHHHHHhhhcCCccccccCC---------CeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235           60 ADEILAKRKTFLSPSLFHLYSK---------PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~---------p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~  130 (447)
                      .++.++++++++.+.+ ..|..         ++++++++|+||||.|||+||||++|++++++||+||+|++|+.+|+++
T Consensus        28 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~  106 (442)
T TIGR03372        28 NQEVIECFKEHVNPGF-LEYRKSVTAGGDYGAVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK  106 (442)
T ss_pred             cHHHHHHHhhccCHHH-HHHHHhhhccCCCCeeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHh
Confidence            3466777777765543 11211         3345677789999999999999999999999999999999999999999


Q ss_pred             cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc---CCCeEEEEcCCcccCchhhhhccCC
Q 013235          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---GCNDIISLRNAYHGNAAGTMGATAQ  207 (447)
Q Consensus       131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t---~~~~ii~~~~~yHG~~~~~~~~t~~  207 (447)
                      +.+.+..+.++...+|+|+|++.+|.++++++|+||||||||+|+|+||.++   ||.+||+++++|||++.+++++++.
T Consensus       107 l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~  186 (442)
T TIGR03372       107 QPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAK  186 (442)
T ss_pred             CCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCC
Confidence            8776655668999999999999999878899999999999999999999996   8899999999999999999999886


Q ss_pred             CCcccccc--CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc--cCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          208 SNWKFNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       208 ~~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      +.++..+.  .+++.++++|+             .+++++.++.  ..++++|+||+||+||++|+++||++||++|+++
T Consensus       187 ~~~~~~~~p~~~~~~~~p~~d-------------~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~l  253 (442)
T TIGR03372       187 PAFRKPFMPLLPGFHHVAFGD-------------IEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRAL  253 (442)
T ss_pred             cccCCCCCCCCCCCEEeCCCC-------------HHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHH
Confidence            65543322  25666776543             2334444432  1246899999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC--CcccccCCCChHH
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVC  360 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~--~~~~~T~~~np~a  360 (447)
                      |++||+++|+||||||||||| ++|+++++|+.|||+||||+|||| +|+|++++++++++.+..  ..|++||+|||++
T Consensus       254 c~~~g~llI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~  332 (442)
T TIGR03372       254 CDEFGALLILDEVQTGMGRTG-KMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLA  332 (442)
T ss_pred             HHHcCCEEEEeecccCCCccc-cchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHH
Confidence            999999999999999999999 799999999999999999999999 699999999999998843  3578999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC
Q 013235          361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI  439 (447)
Q Consensus       361 ~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~  439 (447)
                      |++++++|+++++++++++++++|++|+++|+++.++++ .+.+|||.|+|++|+|.++        .....+++.|+++
T Consensus       333 ~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~--------~~~~~i~~~l~~~  404 (442)
T TIGR03372       333 CAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN--------EIGYAFAKELFQQ  404 (442)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh--------HHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999998 7899999999999999753        2356799999999


Q ss_pred             Cceee
Q 013235          440 CALFF  444 (447)
Q Consensus       440 Gvlv~  444 (447)
                      ||++.
T Consensus       405 Gvl~~  409 (442)
T TIGR03372       405 NILVA  409 (442)
T ss_pred             CcEEe
Confidence            99985

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=9.4e-75  Score=597.26  Aligned_cols=385  Identities=24%  Similarity=0.393  Sum_probs=327.5

Q ss_pred             CCHHHHHHHHhhhcCCcccc---cc-C-CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           58 PSADEILAKRKTFLSPSLFH---LY-S-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~-~-~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      +..+++.+...++++.....   ++ . .|+.+++|+|+||||.|||+||||++|++++++||+||+|.+|+.+|++++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~   97 (472)
T PRK08742         18 QTAEHWRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELE   97 (472)
T ss_pred             CcHHHHHHhhhcccccCCcccccccccCCCeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCC
Confidence            44567777666665433222   11 1 2578999999999999999999999999999999999999999999999887


Q ss_pred             cccc-cccchHHHHHHHHHHHhCCC-----CCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchh
Q 013235          133 HSTV-LYLNHAIADFAEALASKMPG-----NLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAG  200 (447)
Q Consensus       133 ~~~~-~~~~~~~~elae~L~~~~~~-----~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~  200 (447)
                      +.+. .+.++...+|+++|.+.+|.     ++++|+|+||||||||+|||+||.|      ++|.+||+++++|||++.+
T Consensus        98 ~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~g  177 (472)
T PRK08742         98 QVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIG  177 (472)
T ss_pred             CccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchh
Confidence            6544 46788899999999999975     4679999999999999999999998      5688999999999999999


Q ss_pred             hhhccCCCCccccccC--CCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCC
Q 013235          201 TMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELA  273 (447)
Q Consensus       201 ~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~  273 (447)
                      ++++++...++..+.+  .++.+++.|+.++.+++...+    .+++.++++++. .++++||||+|| +||+||++++|
T Consensus       178 als~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~iAAvI~EPviqg~gG~~~~p  256 (472)
T PRK08742        178 ALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ-SPGEICALILEPRLQCAGGMRMHH  256 (472)
T ss_pred             hhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEccccccCCCcccCC
Confidence            9999886655543322  567888888888776654332    245677777764 356999999999 79999999999


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcC-----
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR-----  347 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~-----  347 (447)
                      ++||++|+++|++||++||+||||||||||| ++|+++++|++|||+|+||+|+||+ |+|++++++++++.+..     
T Consensus       257 ~~fl~~lr~lc~~~gillI~DEV~TGfGRtG-~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~  335 (472)
T PRK08742        257 PAYLRRARELCDAHGAFLIADEIATGFGRTG-TLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRER  335 (472)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhCCCCCc-cchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccC
Confidence            9999999999999999999999999999999 7999999999999999999999995 99999999999998752     


Q ss_pred             -CcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC-
Q 013235          348 -RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-  425 (447)
Q Consensus       348 -~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~-  425 (447)
                       ..|.+||+|||++|++++++|++++++++.++++++|++|++.++.+ ++++.+++|||.|+|++|||+.++.++.|. 
T Consensus       336 ~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~  414 (472)
T PRK08742        336 AFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEHPHVADVRQAGMVVAFELTRGGNKRTPFP  414 (472)
T ss_pred             ccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEeccceEEEEEeccCccccccCC
Confidence             13789999999999999999999999999999999999999777765 668999999999999999998765554442 


Q ss_pred             --HHHHHHHHHHHHhCCceeec
Q 013235          426 --KAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       426 --~~~~~~~~~~l~~~Gvlv~~  445 (447)
                        .....++.+.|+++||++.+
T Consensus       415 ~~~~~~~~~~~~~~~~Gll~~~  436 (472)
T PRK08742        415 PAARVGLHAYRAALARGVVLRP  436 (472)
T ss_pred             chhHHHHHHHHHHHHCCeEEEe
Confidence              22356788999999999864

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.3e-74  Score=596.44  Aligned_cols=385  Identities=29%  Similarity=0.453  Sum_probs=332.2

Q ss_pred             CCHHHHHHHHhhhcCCccc---cc-cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235           58 PSADEILAKRKTFLSPSLF---HL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~---~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~  133 (447)
                      .+++++.++++++++....   .+ ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~   90 (460)
T PRK06916         11 YTYEELSEKNKAYVWHPFTQMKDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH   90 (460)
T ss_pred             CChHHHHHHHhhccccccccccccccCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCC
Confidence            4456788877777654332   12 1458999999999999999999999999999999999999999999999999877


Q ss_pred             ccc-cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccC
Q 013235          134 STV-LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATA  206 (447)
Q Consensus       134 ~~~-~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~  206 (447)
                      .+. .+.++...+|+++|++.+|.++++|+|+||||||||.|||+||.+      |+|++||+|+++|||++.+++++++
T Consensus        91 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~  170 (460)
T PRK06916         91 STLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGA  170 (460)
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccC
Confidence            654 457889999999999999877789999999999999999999985      6789999999999999999999998


Q ss_pred             CCCcccccc--CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHH
Q 013235          207 QSNWKFNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPA  279 (447)
Q Consensus       207 ~~~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~  279 (447)
                      ...++..+.  ..++..+++|+.++.+++.+.+    .++++++++++. .++++||||+|| |||++|++++|++||++
T Consensus       171 ~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~  249 (460)
T PRK06916        171 IDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE-KHEEIAAIIVEPLVQGAGGMITMPKGYLKG  249 (460)
T ss_pred             CcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh-CCCcEEEEEEeccccCCCCcccCCHHHHHH
Confidence            665554332  2567788888888776654432    345677888864 356999999999 79999999999999999


Q ss_pred             HHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC-------Cccc
Q 013235          280 VYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYF  351 (447)
Q Consensus       280 l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~-------~~~~  351 (447)
                      |+++|++||+++|+|||||||||+| ++|+++++|+.|||+|+||+|+|| +|+|++++++++++.+..       ..|.
T Consensus       250 lr~lc~~~g~llI~DEV~TG~GRtG-~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~  328 (460)
T PRK06916        250 LRNLCTKYNVLFITDEVATGFGRTG-KMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHG  328 (460)
T ss_pred             HHHHHHHcCCEEEeechhhCCCcCc-hhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccC
Confidence            9999999999999999999999999 799999999999999999999999 599999999999987742       2377


Q ss_pred             ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC---HHH
Q 013235          352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAE  428 (447)
Q Consensus       352 ~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~---~~~  428 (447)
                      +||+|||++|++++++|++++++++++++++++++|++.|+++.+ ++.+++|||.|+|++++|++++.++.|.   ...
T Consensus       329 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~  407 (460)
T PRK06916        329 HSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKETKEPFEWTERV  407 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeecCCceeeEEeecccccccCCCchhhH
Confidence            899999999999999999999999999999999999999999965 8899999999999999998766554442   223


Q ss_pred             HHHHHHHHHhCCceeec
Q 013235          429 TLYIMDKMKGICALFFS  445 (447)
Q Consensus       429 ~~~~~~~l~~~Gvlv~~  445 (447)
                      ..++++.|+++||++.+
T Consensus       408 ~~~i~~~~~~~Gvl~~~  424 (460)
T PRK06916        408 GVQVCKRSRELGMLTRP  424 (460)
T ss_pred             HHHHHHHHHHCCeEEEe
Confidence            46789999999999864

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.2e-74  Score=596.62  Aligned_cols=361  Identities=25%  Similarity=0.420  Sum_probs=317.8

Q ss_pred             CeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCCce
Q 013235           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLKV  160 (447)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~~~  160 (447)
                      |+++++++|+||||.|||+||||++|++++++||+||+|.+|+++|++++.+.+. .+.++...+|+++|++.+|.++++
T Consensus        30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~  109 (466)
T PRK07030         30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR  109 (466)
T ss_pred             CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence            4789999999999999999999999999999999999999999999999877554 567899999999999999877889


Q ss_pred             EEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCCC
Q 013235          161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGVF  232 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~~  232 (447)
                      |+|+||||||||.|||+||.+      |+|.+||+++++|||++.+++++++...++..+.  ..++.++++|+.++.++
T Consensus       110 v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~  189 (466)
T PRK07030        110 CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPE  189 (466)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcccccc
Confidence            999999999999999999987      5788999999999999999999988665543322  25677888888877666


Q ss_pred             CCChH----HHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc
Q 013235          233 GADGE----MYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF  307 (447)
Q Consensus       233 ~~d~~----~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~  307 (447)
                      +.+.+    .++++++++++. .++++||||+|| +||++|++++|++||++|+++|++||+++|+||||||||||| ++
T Consensus       190 ~~~~~~~~~~~l~~le~~~~~-~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG-~~  267 (466)
T PRK07030        190 GMSWEEHSRRMFAHMEQTLAE-HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG-TM  267 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc-cc
Confidence            54432    235667888864 357999999999 799999999999999999999999999999999999999999 79


Q ss_pred             ccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC-------CcccccCCCChHHHHHHHHHHHHHhhhhHHHH
Q 013235          308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN  379 (447)
Q Consensus       308 ~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~-------~~~~~T~~~np~a~aaala~L~~i~~~~l~~~  379 (447)
                      |+++++|++|||+||||+|+|| +|+|++++++++++.+..       ..|.+||+|||++|++++++|++++++++.++
T Consensus       268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~  347 (466)
T PRK07030        268 FACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIEN  347 (466)
T ss_pred             hHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999 599999999999998742       24789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC---HHHHHHHHHHHHhCCceeec
Q 013235          380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       380 ~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~---~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++|++|+++|+++. +++.+.+|||.|+|++|++++++.++.|.   .....++.+.|+++||++.+
T Consensus       348 ~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~  415 (466)
T PRK07030        348 NRALARRMAEATAHLA-DHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRP  415 (466)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEe
Confidence            9999999999999995 68999999999999999998765544332   22346789999999999864

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.6e-74  Score=594.17  Aligned_cols=379  Identities=25%  Similarity=0.383  Sum_probs=323.6

Q ss_pred             HHHHHHHhhhcCCcccc---cc-CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           61 DEILAKRKTFLSPSLFH---LY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~---~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      +++.++.+++++.....   +. ..|+++++++|+||||.|||+||||.+|++++++||+||+|.+|+++|++++.|...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~   91 (453)
T PRK06943         12 DDWVARSLRAVWHPCTQMKHHERLPLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAML   91 (453)
T ss_pred             hhHHHHhhcccccCCcCccccccCCCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            45666666665433221   22 248999999999999999999999999999999999999999999999999877544


Q ss_pred             -cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       137 -~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                       .+.++...+|+++|++..|..+++|+|+||||||||.|||+||.+      ++|.+||+++++|||++.+++++++...
T Consensus        92 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~  171 (453)
T PRK06943         92 AGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVAL  171 (453)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChh
Confidence             467889999999999999876789999999999999999999765      4688999999999999999999998765


Q ss_pred             ccccccC--CCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHH
Q 013235          210 WKFNVVQ--TGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~  282 (447)
                      ++..+.+  .++..++.|+.++.++....+    .++++++++++.. ++++||||+|| +||++|++++|++||++|++
T Consensus       172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~  250 (453)
T PRK06943        172 FKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAER-AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRA  250 (453)
T ss_pred             hhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEEeccccccCCcccCCHHHHHHHHH
Confidence            5544322  466778888766655443221    2356778888643 56999999999 59999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC------cccccCC
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFG  355 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~------~~~~T~~  355 (447)
                      +|++||++||+||||||||||| ++|+++++|++|||+|+||+|+|| +|+|++++++++++.+...      .|.+||+
T Consensus       251 lc~~~gillI~DEV~TG~GRtG-~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~  329 (453)
T PRK06943        251 LCDRYGVHLIADEIAVGCGRTG-TFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYT  329 (453)
T ss_pred             HHHHcCCEEEeechhhCCCCCc-chhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCC
Confidence            9999999999999999999999 799999999999999999999999 5999999999999988531      3789999


Q ss_pred             CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHH
Q 013235          356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK  435 (447)
Q Consensus       356 ~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~  435 (447)
                      |||++|++++++|++++++++.++++++|++|+++|+++. +++.+.+|||.|+|++++|+.++   .+......++.+.
T Consensus       330 gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gvel~~~~---~~~~~~~~~i~~~  405 (453)
T PRK06943        330 GNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-AHPQVRHLRQRGTIFAFDVALDG---DAARTFSRRFFEA  405 (453)
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCEEeEeccccEEEEEEccCC---CcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999985 57889999999999999998542   2333346788999


Q ss_pred             HHhCCceeec
Q 013235          436 MKGICALFFS  445 (447)
Q Consensus       436 l~~~Gvlv~~  445 (447)
                      |+++||++.+
T Consensus       406 ~~~~Gll~~~  415 (453)
T PRK06943        406 ALERELLLRP  415 (453)
T ss_pred             HHHCCcEEEe
Confidence            9999999864

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=1.8e-74  Score=594.41  Aligned_cols=383  Identities=28%  Similarity=0.404  Sum_probs=324.3

Q ss_pred             HHHHHHHhhhcCCccc---ccc-CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           61 DEILAKRKTFLSPSLF---HLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~---~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      .++++..++++++...   .+. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~   87 (456)
T PRK07480          8 AELQALDAAHHLHPFSDMKALNEKGSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNT   87 (456)
T ss_pred             HHHHhhhhcccccCcccccccccCCCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            4555555555443322   111 347899999999999999999999999999999999999999999999999876443


Q ss_pred             --cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCC
Q 013235          137 --LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (447)
Q Consensus       137 --~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~  208 (447)
                        .+.++...+|+++|++.+|.++++|+|+||||||||.|||+||.+      ++|.+||+++++|||++.+++++++..
T Consensus        88 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~  167 (456)
T PRK07480         88 FFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMK  167 (456)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCCh
Confidence              367899999999999999877889999999999999999999998      568899999999999999999998765


Q ss_pred             Ccccccc--CCCeEeecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          209 NWKFNVV--QTGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       209 ~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      .++...+  .+++.+++.|+.++.++..+.+.    +.+.+++.+....++++||||+||+||++|++++|++||++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~  247 (456)
T PRK07480        168 YMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQR  247 (456)
T ss_pred             hhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence            4443322  35677888888887665433332    24667665554456799999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhc--CC--cccccCCCC
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLT--RR--NYFNTFGGN  357 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~--~~--~~~~T~~~n  357 (447)
                      +|++||++||+||||||||||| ++|+++++|++|||+||||+|+||+ |+|++++++++++.+.  ..  .|.+||+||
T Consensus       248 lc~~~g~llI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gn  326 (456)
T PRK07480        248 ICRKYDILLVADEVICGFGRTG-EWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGH  326 (456)
T ss_pred             HHHHcCCEEEEechhhCCCcCc-chhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcC
Confidence            9999999999999999999999 7999999999999999999999995 9999999999999883  22  478999999


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC--H-HHHHHHH
Q 013235          358 PVCTAAGHAVLKVIQKDKLQNNA-HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--K-AETLYIM  433 (447)
Q Consensus       358 p~a~aaala~L~~i~~~~l~~~~-~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~--~-~~~~~~~  433 (447)
                      |++|++|+++|++++++++.+++ +++|++|+++|+++ ++++.+.+|||.|+|++|+|+++..++.|.  . .....+.
T Consensus       327 pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~  405 (456)
T PRK07480        327 PVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICR  405 (456)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHH
Confidence            99999999999999999999999 69999999999996 578999999999999999998765444332  1 1235678


Q ss_pred             HHHHhCCceeec
Q 013235          434 DKMKGICALFFS  445 (447)
Q Consensus       434 ~~l~~~Gvlv~~  445 (447)
                      +.|+++||++..
T Consensus       406 ~~~~~~Gll~~~  417 (456)
T PRK07480        406 DHCFANGLIMRA  417 (456)
T ss_pred             HHHHHCCcEEee
Confidence            899999999864

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=100.00  E-value=2.9e-76  Score=543.28  Aligned_cols=380  Identities=43%  Similarity=0.746  Sum_probs=345.3

Q ss_pred             CHHHHHHHHhhhcCCcccccc-CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~  137 (447)
                      +..+.+..+++++.+....|| ..|+.|+|++|+|++|.+|++|||+.+++..+  |||||+|++|...|+..+ .++.+
T Consensus         6 SK~etlklRk~hIG~~Cq~Fy~sDP~kivRaq~QYmfDE~g~~yLDCInNVaHv--ghchp~VV~A~~kQmat~-~tN~R   82 (452)
T KOG1403|consen    6 SKTETLKLRKQHIGQACQLFYRSDPLKIVRAQGQYMFDEEGTRYLDCINNVAHV--GHCHPEVVRAGAKQMATI-STNNR   82 (452)
T ss_pred             hhHHHHhHHHhccCcceeEEecCCchhhehhccceeeccCcccHHHHhhhhhhc--ccCCHHHHHHHHHHHhHh-cccch
Confidence            456889999999998876665 46999999999999999999999999988854  999999999999999987 34568


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC-
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-  216 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~-  216 (447)
                      |.+..+.+.++.|...+|. ++.++|+|||||||++|+|+||.+|+..++|+++.+|||.....+-+   +.|+|+.+. 
T Consensus        83 Flhd~lv~cA~~l~stlPe-Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~---SPYKF~~g~~  158 (452)
T KOG1403|consen   83 FLHDELVQCARTLTSTLPE-LSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEV---SPYKFNQGGG  158 (452)
T ss_pred             hhHHHHHHHHHHHhhcCCC-ceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeec---cceeccCCCC
Confidence            8999999999999999997 99999999999999999999999999999999999999998877766   467777643 


Q ss_pred             ---C-CeEeecCCCCcCCCCCCC-------hHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          217 ---T-GVHHALNPDPYRGVFGAD-------GEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       217 ---~-g~~~~~~p~~~~~~~~~d-------~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                         + -++..|+|+.||+.|..+       ...|.++++++++..  ....+|++|.|..|+.||-+.||.+|++.+.+.
T Consensus       159 v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~  238 (452)
T KOG1403|consen  159 VAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADA  238 (452)
T ss_pred             cCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHH
Confidence               3 356789999999988642       235788888888642  234799999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC--CcccccCCCChHHH
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCT  361 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~--~~~~~T~~~np~a~  361 (447)
                      .+.+|.++|+||||+||||.|+++|+++.+++.||||||||.||||.|+++|+++++|++.+..  ..+++||+|||++|
T Consensus       239 Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsC  318 (452)
T KOG1403|consen  239 VRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSC  318 (452)
T ss_pred             HhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhH
Confidence            9999999999999999999999999999999999999999999999999999999999999976  35889999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-C
Q 013235          362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-C  440 (447)
Q Consensus       362 aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-G  440 (447)
                      |+++++++++++|+++++..++|++|...|+++..+|++|++|||.||||||++++|+.+++|+..++..++..|++. |
T Consensus       319 Av~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~  398 (452)
T KOG1403|consen  319 AVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYR  398 (452)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999875 7


Q ss_pred             ceeec
Q 013235          441 ALFFS  445 (447)
Q Consensus       441 vlv~~  445 (447)
                      ||+..
T Consensus       399 VLlsa  403 (452)
T KOG1403|consen  399 VLLSA  403 (452)
T ss_pred             EEEec
Confidence            88763

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=5.1e-74  Score=590.97  Aligned_cols=384  Identities=33%  Similarity=0.508  Sum_probs=326.7

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 013235           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (447)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~  134 (447)
                      ++.+++.+++++..+++.+....  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|.
T Consensus        14 ~~~~~s~~~~~~~~~~~~~~~~~--~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~   91 (443)
T PRK06058         14 IPGPKSQALAERRAAAVAAGVGS--TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHT   91 (443)
T ss_pred             CCCccHHHHHHHHHHhhcccccc--CCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCc
Confidence            34466777887777776554322  3489999999999999999999999999999999999999999999999988654


Q ss_pred             cc-cccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccc
Q 013235          135 TV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWK  211 (447)
Q Consensus       135 ~~-~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~  211 (447)
                      .. .+.++...+|+++|++.+|.. .++++|+||||||||.|+|+||.+++|++||+++++|||++.+++++++.. .++
T Consensus        92 ~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~  171 (443)
T PRK06058         92 CFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYK  171 (443)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccc
Confidence            43 246788899999999999854 368999999999999999999999999999999999999999999998643 233


Q ss_pred             cccc--CCCeEeecCCCCcCCCCC--CChHHH----HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          212 FNVV--QTGVHHALNPDPYRGVFG--ADGEMY----AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~--~d~~~~----~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      ..+.  ..++..++.|++++.+..  .+.+.+    .+.+++.+   .++++|+||+||+||++|+++||++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~l  248 (443)
T PRK06058        172 SGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQV---GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEW  248 (443)
T ss_pred             cccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhh---CCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            3221  245666776766654321  111222    22333333   246899999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHH
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aa  363 (447)
                      |++||+++|+|||||||||+| ++|+++++|++|||+|+||+++||+|+|++++++++++.+....|.+||+|||++|++
T Consensus       249 c~~~gillI~DEV~tGfgRtG-~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aa  327 (443)
T PRK06058        249 CRENGVVFIADEVQTGFARTG-AWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAA  327 (443)
T ss_pred             HHHcCCEEEEeccccCCCcCh-hhhHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999 7999999999999999999999999999999999999988777788999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       364 ala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      |+++|++++++++.+++++++++|+++|+++.++++.+.+|||.|+|+++++++++ ++.++...+.++.+.|+++||++
T Consensus       328 a~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~~  406 (443)
T PRK06058        328 ALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG-TTEPDAELTKALAAAAHAAGVIV  406 (443)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCC-CCCCcHHHHHHHHHHHHHCCeEE
Confidence            99999999999999999999999999999999899999999999999999998764 23455556788999999999998


Q ss_pred             ec
Q 013235          444 FS  445 (447)
Q Consensus       444 ~~  445 (447)
                      .+
T Consensus       407 ~~  408 (443)
T PRK06058        407 LT  408 (443)
T ss_pred             ec
Confidence            63

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-74  Score=594.04  Aligned_cols=382  Identities=31%  Similarity=0.487  Sum_probs=326.7

Q ss_pred             HHHHHHhhhcCCccccc----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235           62 EILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~  137 (447)
                      ++++..+++++......    ...|+++++|+|+||||.|||+||||++|++++++||+||+|.+|+.+|++++.|.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~   89 (466)
T PRK07036         10 ALAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPF   89 (466)
T ss_pred             HHHHHhhcccccCccCccccccCCCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccc
Confidence            34455566655443211    12489999999999999999999999999999999999999999999999998765442


Q ss_pred             --ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          138 --YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       138 --~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                        +.++...+|+++|++..|.++++|+|+||||||||.|||+||.+      ++|++||+|+++|||++.+++++++...
T Consensus        90 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~  169 (466)
T PRK07036         90 GDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAA  169 (466)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCc
Confidence              57889999999999999887889999999999999999999998      4588999999999999999999988665


Q ss_pred             cccccc--CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          210 WKFNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       210 ~~~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      ++..+.  ..++.+++.|+.++.+++.+.+    .+.+.+++.+....++++||||+||+||++|+++||++||++|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~l  249 (466)
T PRK07036        170 DRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREI  249 (466)
T ss_pred             ccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHH
Confidence            443332  2467788888888776654322    2355677777655567999999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCccccc-ccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC-------CcccccC
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTF  354 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~-~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~-------~~~~~T~  354 (447)
                      |++||+++|+|||||||||+| ++|+++ ++|+.|||+|+||+++|| +|+|++++++++++.+..       ..|.+||
T Consensus       250 c~~~g~llI~DEV~tGfGRtG-~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  328 (466)
T PRK07036        250 CRRYDILYISDEVVTGFGRLG-HFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTY  328 (466)
T ss_pred             HHHcCCEEEEeechhCCCcCc-hhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCC
Confidence            999999999999999999999 799998 789999999999999999 499999999999998753       1466899


Q ss_pred             CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCC---CHHHHHH
Q 013235          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAETLY  431 (447)
Q Consensus       355 ~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p---~~~~~~~  431 (447)
                      +|||++|++++++|+++++++++++++++|++|+++|+++ ++++.+.+|||.|+|++|+|++++.++.|   +......
T Consensus       329 ~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~  407 (466)
T PRK07036        329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-RELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQR  407 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHH
Confidence            9999999999999999999999999999999999999987 57899999999999999999876544433   2235677


Q ss_pred             HHHHHHhCCceeec
Q 013235          432 IMDKMKGICALFFS  445 (447)
Q Consensus       432 ~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++||++.+
T Consensus       408 ~~~~~~~~Gvl~~~  421 (466)
T PRK07036        408 IDRHCQERGLLVRP  421 (466)
T ss_pred             HHHHHHHCCcEEee
Confidence            89999999999863

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=7.2e-74  Score=590.31  Aligned_cols=384  Identities=26%  Similarity=0.435  Sum_probs=327.7

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 013235           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (447)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~  134 (447)
                      ++++.+++++++..++....... ...|+++++|+|+||||.|||+||||++ .+++++||+||+|++|+.+|++++.+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~a~G~~l~D~dG~~ylD~~g-~~~~~lGh~~p~v~~Ai~~ql~~~~~~  106 (459)
T PRK06082         29 MNDERTQALLKRDSEVFLHQAMS-TPCLDVLASAEGIYIEDVDGKKYMDFHG-NNVHQLGYGHPHVIEKVKEQMAKLPFS  106 (459)
T ss_pred             CCCcchHHHHHHHHHHhcccccC-CCCCceEEeeeeeEEEECCCCEEEEccc-HhhcccCCCCHHHHHHHHHHHHhCCCc
Confidence            44455666666444443222111 1337899999999999999999999974 488999999999999999999998776


Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ...+.++...+|+++|++.+|..+++++|+||||||||+|+|+||.+++|.+||+|+++|||++.+++++++...++..+
T Consensus       107 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~  186 (459)
T PRK06082        107 PRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGM  186 (459)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCC
Confidence            55678999999999999999876789999999999999999999999999999999999999999999998866555333


Q ss_pred             c--CCCeEeecCCCCcCCCCCCC---hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          215 V--QTGVHHALNPDPYRGVFGAD---GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       215 ~--~~g~~~~~~p~~~~~~~~~d---~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      .  .+++..++.|+.++.+|...   .+.+++.+++++++  .+++|+||+||+||+| .+++|++||++|+++|++||+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~  263 (459)
T PRK06082        187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK--EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNV  263 (459)
T ss_pred             CCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc--CCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCC
Confidence            2  26788888888888777532   12346678888864  3489999999999985 677899999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-cccccCCCChHHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-~~~~T~~~np~a~aaala~  367 (447)
                      ++|+||||||||||| ++|+++++|++|||+||||+|+|| +|+|++++++++++.+... .| +||++||++|++++++
T Consensus       264 llI~DEV~tG~GRtG-~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~  341 (459)
T PRK06082        264 LLIIDEIPNGMGRTG-EWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAALAT  341 (459)
T ss_pred             EEEEechhhCCCccc-hhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHH
Confidence            999999999999999 799999999999999999999999 5999999999998765422 34 8999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |++++++++.++++++|++|+++|+++.++++.+++|||.|+|+++||+++..++.+....+..++..|+++||++.+
T Consensus       342 L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~  419 (459)
T PRK06082        342 IEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKV  419 (459)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEe
Confidence            999999999999999999999999999999999999999999999999876555555555667889999999999864

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-74  Score=639.69  Aligned_cols=383  Identities=45%  Similarity=0.723  Sum_probs=338.3

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~  138 (447)
                      +..++++++++++.+....+|..|+++++|+|+||||.|||+||||++|+  .++||+||+|++|+.+|++++.. ...|
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~-~~~~  660 (1013)
T PRK06148        584 DKAEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNT-NTRY  660 (1013)
T ss_pred             CHHHHHHHHHHhcCcccccccCCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCC-cCCc
Confidence            34567888888888887767788999999999999999999999999985  68999999999999999998733 3367


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc---
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV---  215 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~---  215 (447)
                      .++...+|+++|++.+|.++++|+|+||||||||+|||+||.+|||++||+++++|||++.+++++++.. ++....   
T Consensus       661 ~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~-~~~~~~~~~  739 (1013)
T PRK06148        661 LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYK-FNRKGGKGR  739 (1013)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchh-hcccCCCCC
Confidence            8999999999999999977889999999999999999999999999999999999999999999987632 222211   


Q ss_pred             CCCeEeecCCCCcCCCCCCCh----HHHHHHHHHHHHc--cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          216 QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      ..++..++.|+.++.+|+.+.    ..+.+++++.++.  ..++++||||+||+||++|.+++|++||++|+++|++||+
T Consensus       740 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~  819 (1013)
T PRK06148        740 PDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGG  819 (1013)
T ss_pred             CCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCC
Confidence            245677788888888886322    2355667766652  2246899999999999999999999999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC-cccccCCCChHHHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~-~~~~T~~~np~a~aaala~L  368 (447)
                      ++|+|||||||||+|.++|+++++|++|||+||||+||||+|+|++++++++++.+... .|++||+|||++|++++++|
T Consensus       820 llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L  899 (1013)
T PRK06148        820 VCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVL  899 (1013)
T ss_pred             EEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHH
Confidence            99999999999999954899999999999999999999999999999999999988764 37899999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++|++++++++++++|++|+++|+++.++++++++|||.|+|+++||+.++.++.|+...+..+++.|+++||++.+
T Consensus       900 ~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~  976 (1013)
T PRK06148        900 DIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGT  976 (1013)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEec
Confidence            99999999999999999999999999999999999999999999999877666667666778899999999999963

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=7.7e-74  Score=590.71  Aligned_cols=382  Identities=27%  Similarity=0.426  Sum_probs=325.3

Q ss_pred             HHHHHHhhhcCCcccc---cc-CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-
Q 013235           62 EILAKRKTFLSPSLFH---LY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-  136 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~---~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-  136 (447)
                      +++++..+++++....   +. ..|+++++|+|+|+||.|||+||||++|++++++||+||+|++|+++|++++.+... 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~   86 (460)
T PRK06105          7 SLEARDIAYHLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTF   86 (460)
T ss_pred             HHHHhhhhhcccCCcccccccccCCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecc
Confidence            4666666665443321   11 358999999999999999999999999999999999999999999999999865432 


Q ss_pred             -cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       137 -~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                       .+.++...+|+++|++.+|.++++|+|+||||||||+|||+||.+      ++|.+||+++++|||++.+++++++...
T Consensus        87 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~  166 (460)
T PRK06105         87 SHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPN  166 (460)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcc
Confidence             467889999999999999877889999999999999999999877      4688999999999999999999987654


Q ss_pred             ccccc--cCCCeEeecCCCCcCCCCC-CC----hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          210 WKFNV--VQTGVHHALNPDPYRGVFG-AD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       210 ~~~~~--~~~g~~~~~~p~~~~~~~~-~d----~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      ++..+  ...++.+++.|+.++.... ..    ...+.+++++++....++++|+||+||+||++|++++|++||++|++
T Consensus       167 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~  246 (460)
T PRK06105        167 NHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQA  246 (460)
T ss_pred             cccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHH
Confidence            44332  2357788888876654211 11    12245778888865445789999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-------cccccC
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTF  354 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-------~~~~T~  354 (447)
                      +|++||+++|+|||||||||+| ++|+++++|++|||+|+||+|+|| +|+|++++++++++.+...       .|.+||
T Consensus       247 lc~~~~~llI~DEv~tG~GRtG-~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~  325 (460)
T PRK06105        247 VLRKYDILLVADEVICGFGRTG-NMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTA  325 (460)
T ss_pred             HHHHcCCeEEEeccccCCCcCc-hhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCC
Confidence            9999999999999999999999 799999999999999999999999 6999999999999987531       267999


Q ss_pred             CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC---HHHHHH
Q 013235          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLY  431 (447)
Q Consensus       355 ~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~---~~~~~~  431 (447)
                      +|||++|++++++|+++++++++++++++|++|+++|+++ ++++.+.+|||.|+|++|||++++.++.|.   ...+.+
T Consensus       326 ~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~  404 (460)
T PRK06105        326 SGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGAR  404 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHH
Confidence            9999999999999999999999999999999999999999 789999999999999999998665444442   234567


Q ss_pred             HHHHHHhCCceeec
Q 013235          432 IMDKMKGICALFFS  445 (447)
Q Consensus       432 ~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++||++.+
T Consensus       405 i~~~~~~~Gvl~~~  418 (460)
T PRK06105        405 ANAAAHEHGVISRA  418 (460)
T ss_pred             HHHHHHHCCeEEEe
Confidence            89999999999864

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.8e-73  Score=584.61  Aligned_cols=385  Identities=31%  Similarity=0.517  Sum_probs=334.1

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-c
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-L  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~  137 (447)
                      +++++++..++++.+.... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.+.+. .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~   81 (445)
T PRK08593          3 KAHQLIQEDEHYFAKSGRI-KYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAY   81 (445)
T ss_pred             hHHHHHHHHHHhhcccccc-CCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccc
Confidence            3456777777776554321 2248999999999999999999999999999999999999999999999999877654 3


Q ss_pred             ccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC-ccccc-
Q 013235          138 YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WKFNV-  214 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~-~~~~~-  214 (447)
                      +.++...+|+++|++.+|... ++|+|+||||||||+|||+||.+|+|++||+++++|||++.+++++++... ++..+ 
T Consensus        82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  161 (445)
T PRK08593         82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG  161 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence            578999999999999998653 689999999999999999999999999999999999999999999987432 22222 


Q ss_pred             -cCCCeEeecCCCCcCCCCCCCh----HHHHHHHHHHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          215 -VQTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       215 -~~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                       ..+++.++++|+.+++++....    +.++++++++++.. .++++|+||+||+||++|++++|++||++|+++|++||
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g  241 (445)
T PRK08593        162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG  241 (445)
T ss_pred             CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence             2367888999988877654332    23456677666542 24689999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L  368 (447)
                      ++||+|||||||||+| ++|+++++|+.|||+||||+++||+|+|++++++++++.+....+.+||++||++|++++++|
T Consensus       242 ~llI~DEv~tg~GrtG-~~~a~~~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l  320 (445)
T PRK08593        242 ILFAVDDIQQGLGRTG-KWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATI  320 (445)
T ss_pred             CEEEEechhhCCCcCc-hHHHHHhcCCCCCEeeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999 788999999999999999999999999999999999998876667889999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++++++.+++++++++|+++|+++.++++.+++|||.|+|+++++..+..++.++...+..+++.|+++||++..
T Consensus       321 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~  397 (445)
T PRK08593        321 DMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIA  397 (445)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEec
Confidence            99999999999999999999999999999999999999999999999876545556656678899999999999853

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=3.5e-73  Score=585.79  Aligned_cols=384  Identities=26%  Similarity=0.370  Sum_probs=323.4

Q ss_pred             HHHHHHHhhhcCCcccc--cc--CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           61 DEILAKRKTFLSPSLFH--LY--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~--~~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      +++.+...++.+.....  .+  ..|+++++|+|+||||.|||+||||.+|+++.+|||+||+|++|+++|++++.+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~   91 (460)
T PRK12403         12 RDYQAADAAHHIHAFLDQKALNAEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNM   91 (460)
T ss_pred             HHHHHhhhcccccccccccccccCCCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeec
Confidence            45566555554433221  11  248999999999999999999999999999999999999999999999999876544


Q ss_pred             c--ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc---C---CCeEEEEcCCcccCchhhhhccCCC
Q 013235          137 L--YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---G---CNDIISLRNAYHGNAAGTMGATAQS  208 (447)
Q Consensus       137 ~--~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t---~---~~~ii~~~~~yHG~~~~~~~~t~~~  208 (447)
                      .  +.++...+|+++|++.+|.++++++|+||||||||+|||+||.|+   +   +..|+++.++|||++.+++++++..
T Consensus        92 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~  171 (460)
T PRK12403         92 FFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMK  171 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCc
Confidence            2  457889999999999998777899999999999999999999883   4   4568899999999999999998865


Q ss_pred             Ccccccc-CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          209 NWKFNVV-QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       209 ~~~~~~~-~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      .++...+ .+++.+++.|+.|+.+++....    .+.+++++.+....++++|+||+|||||++|++.+|++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~l  251 (460)
T PRK12403        172 FMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRI  251 (460)
T ss_pred             cccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence            4442221 2567888888887765533222    2345676666544457899999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcC--C--cccccCCCCh
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR--R--NYFNTFGGNP  358 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~--~--~~~~T~~~np  358 (447)
                      |++||++||+||||||||||| ++|+++++|++|||+||||+|+||+ |+|++++++++++.+..  .  .|.+||++||
T Consensus       252 c~~~g~lLI~DEV~tGfGRtG-~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnP  330 (460)
T PRK12403        252 CRQYDVLLCADEVIGGFGRTG-EWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHP  330 (460)
T ss_pred             HHHcCCEEEEeccccCCCcCc-hhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCH
Confidence            999999999999999999999 7999999999999999999999995 99999999999998853  1  3678999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCH---HHHHHHHH
Q 013235          359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK---AETLYIMD  434 (447)
Q Consensus       359 ~a~aaala~L~~i~~~~l~~~~~-~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~---~~~~~~~~  434 (447)
                      ++|++++++|++|+++++.++++ +++++|+++|+++.++++++++|||.|+|++++|++++.++.+..   ....++.+
T Consensus       331 l~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~  410 (460)
T PRK12403        331 VAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRT  410 (460)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHH
Confidence            99999999999999999999996 999999999999999999999999999999999987655444422   23455778


Q ss_pred             HHHhCCceeec
Q 013235          435 KMKGICALFFS  445 (447)
Q Consensus       435 ~l~~~Gvlv~~  445 (447)
                      .|+++||++..
T Consensus       411 ~~~~~Gll~~~  421 (460)
T PRK12403        411 IGFEEGVIIRS  421 (460)
T ss_pred             HHHhCCEEEEe
Confidence            88999999864

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1e-73  Score=588.25  Aligned_cols=363  Identities=32%  Similarity=0.507  Sum_probs=315.0

Q ss_pred             HHHHHHHhhhcCCccccc-------cCCCeEEEeecc-cEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           61 DEILAKRKTFLSPSLFHL-------YSKPLNVVDGKM-QYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-------~~~p~~~~~g~G-~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      .+.++.++.++.|.+..+       ...|+++++|+| +||||.|||+||||.+|++++++||+||+|++|+.+|++++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~  115 (459)
T PRK11522         36 REVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQP  115 (459)
T ss_pred             HHHHHHHHhhcCHHHHHhhhcccccCCCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCc
Confidence            455677777776553111       134779999999 999999999999999999999999999999999999999987


Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC---CCeEEEEcCCcccCchhhhhccCCCC
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~---~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      +.+..+.++...+|+++|++.+|.+.++++|+||||||||.|+|+||.+|+   |.+||+++++|||++.+++++++...
T Consensus       116 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~  195 (459)
T PRK11522        116 LHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKST  195 (459)
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcc
Confidence            766566789999999999999998788999999999999999999999995   77899999999999999999988665


Q ss_pred             ccccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH
Q 013235          210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (447)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~  285 (447)
                      ++.++.+  +++.+++++         |    .+++++.++..  .++++|+||+||+||++|+++||++||++|+++|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~---------d----~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~  262 (459)
T PRK11522        196 FRKPFMPLLPGFRHVPFG---------N----IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCD  262 (459)
T ss_pred             cccCCCCCCCCCcccCCC---------C----HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHH
Confidence            5543222  344444432         3    35566665431  24589999999999999999999999999999999


Q ss_pred             HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC--CcccccCCCChHHHH
Q 013235          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCTA  362 (447)
Q Consensus       286 ~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~--~~~~~T~~~np~a~a  362 (447)
                      +||+++|+|||||||||+| ++|+++++|+.|||+||||+|||| +|+|++++++++++.+..  ..|++||+|||++|+
T Consensus       263 ~~g~llI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~A  341 (459)
T PRK11522        263 EFGALLILDEVQTGMGRTG-KMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACA  341 (459)
T ss_pred             HcCCEEEeccceecCCccc-hhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHH
Confidence            9999999999999999999 799999999999999999999999 699999999999987743  357899999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       363 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +++++|++++++++.++++++|++|+++|+++.++++ .+.+|||.|+|++|+|.++        ..+..+.+.|+++||
T Consensus       342 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~--------~~~~~i~~~l~~~Gv  413 (459)
T PRK11522        342 AALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN--------EIGYNFASEMFRQRV  413 (459)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc--------hHHHHHHHHHHHCCe
Confidence            9999999999999999999999999999999999998 7899999999999999753        235678999999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      ++..
T Consensus       414 l~~~  417 (459)
T PRK11522        414 LVAG  417 (459)
T ss_pred             EEEe
Confidence            9853

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=6e-73  Score=587.70  Aligned_cols=382  Identities=26%  Similarity=0.428  Sum_probs=321.5

Q ss_pred             HHHHHHhhhcCCccccc---cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc--
Q 013235           62 EILAKRKTFLSPSLFHL---YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--  136 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~~---~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~--  136 (447)
                      +...+....+.|.....   ...|+++++++|+||||.|||+||||.+|+++.+|||+||+|++|+++|++++.+...  
T Consensus        49 ~~~~~~~~~~~p~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~  128 (504)
T PLN02760         49 ENGFKGHDMLAPFTAGWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFW  128 (504)
T ss_pred             hhhhccCCcccCcccccccccCCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceeccc
Confidence            33344444544543221   2358999999999999999999999999999999999999999999999999865433  


Q ss_pred             cccchHHHHHHHHHHHhC-CCCCceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          137 LYLNHAIADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~-~~~~~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      .+.++...+|+++|.+.+ +.++++|+|+||||||||+|||+||.|+      +|++||+++++|||++.+++++++.+.
T Consensus       129 ~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~  208 (504)
T PLN02760        129 NRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPA  208 (504)
T ss_pred             ccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChh
Confidence            356888999999999985 4556789999999999999999999773      578999999999999999999988665


Q ss_pred             cccc--ccCCCeEeecCCCCcCCCCC-CCh----HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          210 WKFN--VVQTGVHHALNPDPYRGVFG-ADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       210 ~~~~--~~~~g~~~~~~p~~~~~~~~-~d~----~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      ++..  .+..++.+++.|+.++.... .+.    ..+.+++++++....++++|+||+||+||++|+++||++||++|++
T Consensus       209 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~  288 (504)
T PLN02760        209 LHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQA  288 (504)
T ss_pred             hccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence            4332  23356778888877664321 121    2235678887764445689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcC-------CcccccC
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR-------RNYFNTF  354 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~-------~~~~~T~  354 (447)
                      +|++||++||+|||||||||+| ++|+++++|++|||+||||+||||+ |+|++++++++++.+..       ..|.+||
T Consensus       289 lc~~~g~lLI~DEV~TGfGRtG-~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~  367 (504)
T PLN02760        289 VLKKYDILFIADEVICAFGRLG-TMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTY  367 (504)
T ss_pred             HHHHcCCEEEecchhhCCcccc-hhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCC
Confidence            9999999999999999999999 6999999999999999999999995 99999999999998853       2478999


Q ss_pred             CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC---HHHHHH
Q 013235          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLY  431 (447)
Q Consensus       355 ~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~---~~~~~~  431 (447)
                      +|||++|++|+++|++++++++.+++++++++|+++|+++ .+++++.+|||.|+|++|+|++++..+.|.   ...+..
T Consensus       368 ~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~  446 (504)
T PLN02760        368 SGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAY  446 (504)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHH
Confidence            9999999999999999999999999999999999999998 678999999999999999998765443332   234677


Q ss_pred             HHHHHHhCCceeec
Q 013235          432 IMDKMKGICALFFS  445 (447)
Q Consensus       432 ~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++||++..
T Consensus       447 i~~~~~~~Gvl~~~  460 (504)
T PLN02760        447 FGAECKKRGMLVRV  460 (504)
T ss_pred             HHHHHHhCCcEEEe
Confidence            89999999999864

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=8.9e-73  Score=580.84  Aligned_cols=362  Identities=31%  Similarity=0.495  Sum_probs=316.5

Q ss_pred             CeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCCce
Q 013235           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLKV  160 (447)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~~~  160 (447)
                      | ++++++|+||||+|||+||||.+|++++++||+||+|.+|+++|++++.+... .+.++...+|+++|++.+|..+++
T Consensus        15 p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~   93 (447)
T PRK06917         15 P-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNW   93 (447)
T ss_pred             C-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence            5 58999999999999999999999999999999999999999999999766533 367888999999999999987789


Q ss_pred             EEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCCC
Q 013235          161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGVF  232 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~~  232 (447)
                      ++|+||||||||+|||+||.+      |+|.+||+|+++|||++.+++++++...++..+.  ..++..++.|..++.++
T Consensus        94 v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  173 (447)
T PRK06917         94 SFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPV  173 (447)
T ss_pred             EEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccccccc
Confidence            999999999999999999876      6789999999999999999999887654443322  24566777777777666


Q ss_pred             CCChH----HHHHHHHHHHHccCCCCeEEEEEccccCC-CceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc
Q 013235          233 GADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF  307 (447)
Q Consensus       233 ~~d~~----~~~~~le~~i~~~~~~~~aavi~Epi~~~-gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~  307 (447)
                      +.+.+    .+.+.++++++...++++||||+||+|++ ||+++||++||++|+++|++||+++|+|||||||||+| ++
T Consensus       174 ~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG-~~  252 (447)
T PRK06917        174 QKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG-AM  252 (447)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc-ch
Confidence            54322    24567788887655568999999999995 78999999999999999999999999999999999999 79


Q ss_pred             ccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcCC----cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHH
Q 013235          308 WGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV  382 (447)
Q Consensus       308 ~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~~----~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~  382 (447)
                      |+++++|+.|||+||||+|+||+ |+|++++++++++.+...    .|.+||++||++|++++++|++++++++++++++
T Consensus       253 ~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~  332 (447)
T PRK06917        253 FAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAE  332 (447)
T ss_pred             hhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            99999999999999999999996 999999999999988642    2568999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC---HHHHHHHHHHHHhCCceeec
Q 013235          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~---~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +|++|+++|+++.++++.+.+|||.|+|++|+|++++..+.|.   ......+++.|+++||++.+
T Consensus       333 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~  398 (447)
T PRK06917        333 KGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYP  398 (447)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEe
Confidence            9999999999999999999999999999999998765544442   23567899999999999863

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=9.5e-73  Score=581.02  Aligned_cols=363  Identities=29%  Similarity=0.451  Sum_probs=313.0

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCC--
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGN--  157 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~--  157 (447)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .+.++...+|+++|++.+|..  
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  100 (442)
T TIGR00709        21 LPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKM  100 (442)
T ss_pred             CCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCC
Confidence            58999999999999999999999999999999999999999999999998765443 356889999999999999853  


Q ss_pred             -CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCCCCC
Q 013235          158 -LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGVFGA  234 (447)
Q Consensus       158 -~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~~~~  234 (447)
                       .+.+||+||||||||.|||+||.||+|.+||+++++|||++.+++++++...++....  ..++..+++|+.++.+|+.
T Consensus       101 ~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (442)
T TIGR00709       101 DYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI  180 (442)
T ss_pred             CccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccC
Confidence             3556777999999999999999999999999999999999999999987554433221  2567788888888887754


Q ss_pred             ChH----HHHHHHHHHHHc--cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcc
Q 013235          235 DGE----MYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW  308 (447)
Q Consensus       235 d~~----~~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~  308 (447)
                      +.+    .+.+.+++.++.  ..++++|+||+||+||++|.+++|++||++|+++|++||+++|+|||||||||+| ++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-~~~  259 (442)
T TIGR00709       181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG-TMF  259 (442)
T ss_pred             CchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC-chh
Confidence            322    223334555532  1246899999999999999999999999999999999999999999999999999 799


Q ss_pred             cccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013235          309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK  388 (447)
Q Consensus       309 ~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~  388 (447)
                      +++++|+.|||+|+||+++||+|+|+++++++ ++.+....|.+||++||++|++|+++|++++++++.++++++|++|+
T Consensus       260 a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~  338 (442)
T TIGR00709       260 AFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERIT  338 (442)
T ss_pred             HHHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 46555556789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCC------CCHHHHHHHHHHHHhCCceeec
Q 013235          389 ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT------PAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       389 ~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~------p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++|+++.++++.+.+|||.|+|++|+|++++.++.      ++...+..+...|+++||++.+
T Consensus       339 ~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~  401 (442)
T TIGR00709       339 SFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLET  401 (442)
T ss_pred             HHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEee
Confidence            99999999999999999999999999987643321      2233567889999999999853

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-72  Score=576.97  Aligned_cols=385  Identities=31%  Similarity=0.490  Sum_probs=331.0

Q ss_pred             CHHHHHHHHhhhcCCccccc--c-C-CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 013235           59 SADEILAKRKTFLSPSLFHL--Y-S-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~--~-~-~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~  134 (447)
                      ++.++.++.+++++..+...  + . .|+++++|+|+||||.|||+||||++|++++++||+||+|++|+++|++++.|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~   87 (460)
T PRK06541          8 SDTDLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF   87 (460)
T ss_pred             cHHHHHHHhhcccccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCc
Confidence            45667777677876544332  2 2 478899999999999999999999999999999999999999999999998765


Q ss_pred             cc-cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh---c---CCCeEEEEcCCcccCchhhhhccCC
Q 013235          135 TV-LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---T---GCNDIISLRNAYHGNAAGTMGATAQ  207 (447)
Q Consensus       135 ~~-~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~---t---~~~~ii~~~~~yHG~~~~~~~~t~~  207 (447)
                      +. .+.++...+|+++|++.+|.++++|+|+||||||||.|||+||.+   +   +|.+||+++++|||++.+++++++.
T Consensus        88 ~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~  167 (460)
T PRK06541         88 PLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGL  167 (460)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCC
Confidence            44 567899999999999999877889999999999999999999998   3   4789999999999999999999886


Q ss_pred             CCcccccc--CCCeEeecCCCCcCCC-CCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHH
Q 013235          208 SNWKFNVV--QTGVHHALNPDPYRGV-FGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV  280 (447)
Q Consensus       208 ~~~~~~~~--~~g~~~~~~p~~~~~~-~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l  280 (447)
                      +.++..+.  ..++.+++.|+.++.+ |+++.+.    +++.+++++....++++|+||+||+||++|++++|++||++|
T Consensus       168 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l  247 (460)
T PRK06541        168 PAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERV  247 (460)
T ss_pred             hhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence            65543322  3688889988888776 6555422    356788888754457899999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcCC----cccccCC
Q 013235          281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR----NYFNTFG  355 (447)
Q Consensus       281 ~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~~----~~~~T~~  355 (447)
                      +++|++||+++|+|||||||||+| ++|+++++|++|||+||||+++||+ |+|++++++++++.+...    .|.+||+
T Consensus       248 ~~lc~~~g~llI~DEV~tGfGR~G-~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~  326 (460)
T PRK06541        248 REICDRYDVLLVSDEVICAFGRLG-EMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFG  326 (460)
T ss_pred             HHHHHHcCCEEEEechhhCCCcCc-hhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCC
Confidence            999999999999999999999999 7899999999999999999999997 999999999999887532    3568999


Q ss_pred             CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCH------HHH
Q 013235          356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK------AET  429 (447)
Q Consensus       356 ~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~------~~~  429 (447)
                      +||++|++++++|++++++++.+++++++++|+++|+++.+ ++++.++||.|+|++|+|++++.++.|..      ...
T Consensus       327 gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~  405 (460)
T PRK06541        327 GHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLR  405 (460)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHH
Confidence            99999999999999999999999999999999999999975 88899999999999999987654444421      112


Q ss_pred             HHHHHHHHhCCceeec
Q 013235          430 LYIMDKMKGICALFFS  445 (447)
Q Consensus       430 ~~~~~~l~~~Gvlv~~  445 (447)
                      ..+.+.|+++||++.+
T Consensus       406 ~~~~~~l~~~Gi~~~~  421 (460)
T PRK06541        406 GFLSPALFEAGLYCRA  421 (460)
T ss_pred             HHHHHHHHhCCeEEEe
Confidence            3678899999999864

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-71  Score=571.12  Aligned_cols=384  Identities=38%  Similarity=0.583  Sum_probs=332.1

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 013235           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (447)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~  134 (447)
                      ++.+.+++++++.++++.+...  ...|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.+.
T Consensus        12 ~~~~~s~~l~~~~~~~~~~~~~--~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~   89 (441)
T PRK05769         12 LPGPKAREIIERDEKYLAQSTR--RWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHY   89 (441)
T ss_pred             CCCccHHHHHHHHHHhhCcccc--cCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCc
Confidence            5567788888877777665422  23589999999999999999999999999999999999999999999999998765


Q ss_pred             cc-cccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccc
Q 013235          135 TV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWK  211 (447)
Q Consensus       135 ~~-~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~  211 (447)
                      .. .+.++...+|+++|++.+|.+ .++|+|+||||||||+|+|+||.+|+|.+||+++++|||++.+++++++.. .++
T Consensus        90 ~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~  169 (441)
T PRK05769         90 SLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQR  169 (441)
T ss_pred             cCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccc
Confidence            44 466888999999999999853 579999999999999999999999999999999999999999999987642 233


Q ss_pred             ccc--cCCCeEeecCCCCcCCCCC-CChH----HHHHHHHH-HHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          212 FNV--VQTGVHHALNPDPYRGVFG-ADGE----MYAKDVQD-LIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       212 ~~~--~~~g~~~~~~p~~~~~~~~-~d~~----~~~~~le~-~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      ..+  ...++..++.|+.++.+|+ ++.+    .+++.+++ +++. ..++++|+||+||+||++|++++|++||++|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~  249 (441)
T PRK05769        170 KGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRK  249 (441)
T ss_pred             cCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHH
Confidence            222  2367888999988888876 3332    24556777 4432 235689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHH
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA  362 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~a  362 (447)
                      +|++||+++|+|||||||||+| .+|+++++|+.||++||||+++||+|+|++++++++++.+ ...|.+||++||++|+
T Consensus       250 l~~~~g~lli~DEv~tG~gr~G-~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~g~p~~~a  327 (441)
T PRK05769        250 LADKYGILLIDDEVQTGMGRTG-KMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFGGNPVAAA  327 (441)
T ss_pred             HHHHcCCEEEEechhhCCCccc-ceehhhccCCCCCEEEEcccccCCcccEEEEEehhhhhcC-CCCCCCCCCcCHHHHH
Confidence            9999999999999999999999 7889999999999999999999999999999999998654 3458899999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       363 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                      +++++|+++++ ++.+++++++++|+++|+++.++++++.+|||.|+|++++|++++  +.++......+.+.|+++||+
T Consensus       328 aa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~Gil  404 (441)
T PRK05769        328 AALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLL  404 (441)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCC--ccccHHHHHHHHHHHHhCCcE
Confidence            99999999998 999999999999999999999999999999999999999997654  234455667899999999999


Q ss_pred             eec
Q 013235          443 FFS  445 (447)
Q Consensus       443 v~~  445 (447)
                      +.+
T Consensus       405 ~~~  407 (441)
T PRK05769        405 LLG  407 (441)
T ss_pred             Eec
Confidence            853

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-71  Score=569.04  Aligned_cols=377  Identities=31%  Similarity=0.476  Sum_probs=327.3

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYL  139 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~  139 (447)
                      +++++....++.+....  ..|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++.|... .++
T Consensus         4 ~~~~~~~~~~~~~~~~~--~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~   81 (425)
T PRK07495          4 TSLTDRRNAAISRGVGM--TTQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVP   81 (425)
T ss_pred             HHHHHHHHhhhccccCc--CCCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccC
Confidence            45555555555443221  238999999999999999999999999999999999999999999999999876543 567


Q ss_pred             chHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCC-CCccccccC-
Q 013235          140 NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNVVQ-  216 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~-~~~~~~~~~-  216 (447)
                      ++...+|+++|++.+|.+. ++|+|+||||||||.|||+||.+|+|.+||+|+++|||++.+++++++. ..++..+.+ 
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  161 (425)
T PRK07495         82 YENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAM  161 (425)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCC
Confidence            8899999999999998653 6899999999999999999999999999999999999999999998875 334433332 


Q ss_pred             -CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          217 -TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       217 -~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                       .++.++++|+.+++   .+.+.+++++++++.. ..++++|+||+||+|+++|++++|++|+++|+++|++||+++|+|
T Consensus       162 ~~~~~~~~~~~~~~g---~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~D  238 (425)
T PRK07495        162 MPDVYHVPFPVELHG---VSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIAD  238 (425)
T ss_pred             CCCeEEecCCccccc---ccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence             57788888876553   2344556777887763 235689999999999999999999999999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~  374 (447)
                      ||||||||+| ++|+++++|+.|||+||||+++||+|+|++++++++++.+....+.+||++||++|++++++|++++++
T Consensus       239 Ev~tG~gr~G-~~~a~~~~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~  317 (425)
T PRK07495        239 EVQTGFARTG-KLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE  317 (425)
T ss_pred             chhhcCCcCC-CceeecccCCCCCEEeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999 688999999999999999999999999999999999998877678899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       375 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++.+++++++++|+++|+++.++++.+.+|||.|+|++++|.+++ .+.|+...+.++++.|+++||++.
T Consensus       318 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~-~~~~~~~~~~~~~~~~~~~Gvl~~  386 (425)
T PRK07495        318 DLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDAD-SGLPSAEFANRVRLKALEKGLILL  386 (425)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCC-CCCccHHHHHHHHHHHHHCCeEEe
Confidence            999999999999999999999999999999999999999997543 345655567789999999999985

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-71  Score=618.46  Aligned_cols=386  Identities=41%  Similarity=0.677  Sum_probs=337.6

Q ss_pred             CCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      .+++.++++++++++.+....+++.|+.+++|+|+|+||.|||+||||++|+.  ++||+||+|++|+++|++++.+. .
T Consensus       543 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~~~~--~lGh~hp~v~~Ai~~q~~~l~~~-~  619 (972)
T PRK06149        543 PPDAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNNVT--VLGHGHPRLAAAAARQWSLLNTN-S  619 (972)
T ss_pred             CCCHHHHHHHHHHhhccchhhcccCCCeEEEeeeeEEEeCCCCEEEECCCCcc--ccCCCCHHHHHHHHHHHHhcccc-c
Confidence            35778999999898877665667788999999999999999999999999864  79999999999999999988653 3


Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc--c-c
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--F-N  213 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~--~-~  213 (447)
                      .+.++...+|+++|++.+|.++++|+|+||||||||+|||+||.+++|++||+++++|||++.+++++++.....  . .
T Consensus       620 ~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~  699 (972)
T PRK06149        620 RFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALE  699 (972)
T ss_pred             cccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccC
Confidence            467788999999999999977889999999999999999999999999999999999999999998886532111  1 1


Q ss_pred             ccCCCeEeecCCCCcCCCCCCC--hHHHHHHHHHHHHc--cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          214 VVQTGVHHALNPDPYRGVFGAD--GEMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d--~~~~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      ....+++.++.|+.++++|..+  ...|.+++++.++.  ..++++|+||+||+||++|.+++|++||++|+++|++||+
T Consensus       700 ~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~  779 (972)
T PRK06149        700 TRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGG  779 (972)
T ss_pred             CCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCC
Confidence            1124677888888888888532  34455666655542  2346899999999999999999999999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC-CcccccCCCChHHHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-RNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~-~~~~~T~~~np~a~aaala~L  368 (447)
                      ++|+|||||||||+|+.+|+++++|++|||+||||+||||+|+|++++++++++.+.. ..+++||+|||++|++|+++|
T Consensus       780 llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L  859 (972)
T PRK06149        780 VCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVL  859 (972)
T ss_pred             EEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence            9999999999999995578999999999999999999999999999999999998864 346689999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++|++++++++++++|++|+++|+++.++++++++|||.|+|+|+||+.++.++.|+...+.++++.|+++||++.+
T Consensus       860 ~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~  936 (972)
T PRK06149        860 DVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQP  936 (972)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEee
Confidence            99999999999999999999999999999999999999999999999877666667666778899999999999864

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-72  Score=521.97  Aligned_cols=362  Identities=29%  Similarity=0.489  Sum_probs=317.3

Q ss_pred             CCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235           58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~  137 (447)
                      .+++++++...+|-..+   |.+.|+++++++|+++||.+|++|+||.++++.++.|||||.|++|+++|.+++.-++..
T Consensus        21 ~aS~~~~~~E~k~~ahn---yhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssra   97 (427)
T KOG1402|consen   21 TASQQIMERENKYGAHN---YHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRA   97 (427)
T ss_pred             cchhhhhchhhhccccc---CCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHH
Confidence            34566777767765444   667899999999999999999999999999999999999999999999999998777777


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc--------CCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t--------~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      +.++...++++.+.++++  .+.|+-.|+|.||+|.|+|+||.+.        .+.+|++..++|||+|.++.+++..+.
T Consensus        98 fYnd~~~~f~~~vt~lf~--~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~d  175 (427)
T KOG1402|consen   98 FYNDVLGEFAEYVTKLFG--YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPD  175 (427)
T ss_pred             HhhhhHHHHHHHHHHhcC--cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcc
Confidence            889999999999999994  6789999999999999999999652        245788899999999999999988653


Q ss_pred             -cc-ccccCCC-eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235          210 -WK-FNVVQTG-VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (447)
Q Consensus       210 -~~-~~~~~~g-~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~  286 (447)
                       |. |....++ +..+++         +|    +++|+.+++.   +++|+||+|||||++|++.||++||+++++||++
T Consensus       176 s~~~fgp~~P~~~~~v~Y---------~d----~eale~~l~~---~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtk  239 (427)
T KOG1402|consen  176 SWDGFGPFLPGVVDKVPY---------GD----AEALEVALKS---PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTK  239 (427)
T ss_pred             hhhccCCCCCCcceeecc---------CC----HHHHHHHhcC---CCeeEEEeeccccccceEeCCchhHHHHHHHHHh
Confidence             32 2222245 455543         23    6788888874   5899999999999999999999999999999999


Q ss_pred             hCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235          287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       287 ~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal  365 (447)
                      |++++|+||||||+|||| ++|++++.++.||||+|||+++|| +|+++++.++++|-.+.++.|++||+|||++|++|.
T Consensus       240 ynvl~I~DEvQTGl~RTG-k~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vai  318 (427)
T KOG1402|consen  240 YNVLLIADEVQTGLARTG-KLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAI  318 (427)
T ss_pred             hcEEEEehhhhhcccccC-cEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHH
Confidence            999999999999999999 899999999999999999999999 699999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      |+|++|.+++|.++++.+|..|+.+|.++..+++ ++.+|||+|++.+|++...+.+    ...+..++-.|+++|+|..
T Consensus       319 Aalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~----~~~aw~~cl~lk~~g~LAk  394 (427)
T KOG1402|consen  319 AALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTS----GQDAWDVCLALKENGLLAK  394 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEecccccc----chhHHHHHHcccccccccC
Confidence            9999999999999999999999999999999885 5789999999999999754321    2346778888899999864


Q ss_pred             c
Q 013235          445 S  445 (447)
Q Consensus       445 ~  445 (447)
                      +
T Consensus       395 p  395 (427)
T KOG1402|consen  395 P  395 (427)
T ss_pred             C
Confidence            3

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=2.5e-70  Score=565.05  Aligned_cols=389  Identities=32%  Similarity=0.518  Sum_probs=336.5

Q ss_pred             CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235           54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (447)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~  133 (447)
                      .++.+++.+++++..+++.+....  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+++|++++.|
T Consensus        11 ~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~   88 (451)
T PRK06918         11 QIPGPKAASLLERRQNIVPKGVSN--GIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIH   88 (451)
T ss_pred             cCCCCCHHHHHHHHHHhhcccccc--CCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccC
Confidence            345678889999888887554322  237899999999999999999999999999999999999999999999999877


Q ss_pred             ccc-cccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCC-CCc
Q 013235          134 STV-LYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNW  210 (447)
Q Consensus       134 ~~~-~~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~-~~~  210 (447)
                      ... .+.++...+|+++|++.+|... ++|+|+||||||||+|||+||.+|+|.+||+++++|||++.+++++++. ..+
T Consensus        89 ~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~  168 (451)
T PRK06918         89 TGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPY  168 (451)
T ss_pred             ccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccc
Confidence            543 4568899999999999998655 5899999999999999999999999999999999999999999998874 234


Q ss_pred             ccccc--CCCeEeecCCCCcCCCCCCChHH----HHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          211 KFNVV--QTGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       211 ~~~~~--~~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      +..+.  .+++.++++|+.++.+.+...+.    +.+.+++++.. ..++++||||+||+||++|.++++++|+++|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l  248 (451)
T PRK06918        169 KFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNI  248 (451)
T ss_pred             cccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHH
Confidence            33222  25678888888777655432222    23456665532 2356899999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHH
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aa  363 (447)
                      |++||+++|+||||+||||+| .+|+++++++.|||++|||++++|+|+|++++++++++.+....+.+||++||++|++
T Consensus       249 ~~~~gillI~DEV~tg~gr~g-~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aa  327 (451)
T PRK06918        249 CSEHGILFVADEIQTGFARTG-KYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAA  327 (451)
T ss_pred             HHHcCCEEEEeccccCcCccC-ceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHH
Confidence            999999999999999999999 6888899999999999999999999999999999999988766788999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       364 ala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ++++|++++++++.+++++++++|+++|+++.++++.+.+|||.|+|+++++.+++.++.|+...+.++.+.|+++||++
T Consensus       328 a~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv  407 (451)
T PRK06918        328 ALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLL  407 (451)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEE
Confidence            99999999999999999999999999999998888889999999999999998655455566666788999999999999


Q ss_pred             ec
Q 013235          444 FS  445 (447)
Q Consensus       444 ~~  445 (447)
                      .+
T Consensus       408 ~~  409 (451)
T PRK06918        408 LS  409 (451)
T ss_pred             ee
Confidence            64

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=7.3e-71  Score=565.87  Aligned_cols=360  Identities=27%  Similarity=0.409  Sum_probs=313.0

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCC
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~  158 (447)
                      +.|+++++++|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .+.++...+|+++|++.+|.++
T Consensus        27 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~  106 (442)
T PRK13360         27 KAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGL  106 (442)
T ss_pred             CCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999999876554 3568889999999999998778


Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCC-CcC
Q 013235          159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPD-PYR  229 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~-~~~  229 (447)
                      ++|+|+||||||||.|+|+||.++      +|.+||+|+++|||++.+++++++...++..+.  ..++.+++.+. .++
T Consensus       107 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~  186 (442)
T PRK13360        107 NHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLAR  186 (442)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhc
Confidence            899999999999999999999985      578999999999999999999998765544332  24567777764 455


Q ss_pred             CCCCCCh----HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC
Q 013235          230 GVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS  305 (447)
Q Consensus       230 ~~~~~d~----~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~  305 (447)
                      ++|..+.    ..+.+++++++....++++|+||+||+||++|++++|++||++|+++|++||+++|+|||||||||+| 
T Consensus       187 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG-  265 (442)
T PRK13360        187 NAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG-  265 (442)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-
Confidence            5554322    23467788888755557899999999999999999999999999999999999999999999999999 


Q ss_pred             CcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-------cccccCCCChHHHHHHHHHHHHHhhhhHH
Q 013235          306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQ  377 (447)
Q Consensus       306 ~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-------~~~~T~~~np~a~aaala~L~~i~~~~l~  377 (447)
                      ++|+++++|+.|||+||||+|+|| +|+|++++++++++.+...       .|.+||++||++|++++++|++++++++.
T Consensus       266 ~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~  345 (442)
T PRK13360        266 APFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLL  345 (442)
T ss_pred             cchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHH
Confidence            799999999999999999999999 7999999999999987542       26689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++++++++|+++|+++. +++.+.+|||.|+|++++++.....  + ...+.++++.|+++||++.
T Consensus       346 ~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~~~~l~~~~~~--~-~~~~~~~~~~l~~~Gvl~~  408 (442)
T PRK13360        346 TRAARLAPYWEDALHSLR-DAPHVIDIRNLGLVGAVELAPRDGK--P-GKRAYEVFLKCFEKGLMIR  408 (442)
T ss_pred             HHHHHHHHHHHHHHHHhh-cCCCeeeeeccceEEEEEEecCCCC--c-chhHHHHHHHHHHCCcEEE
Confidence            999999999999999985 4888999999999999999753211  1 2345678889999999985

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=5.2e-70  Score=559.74  Aligned_cols=383  Identities=32%  Similarity=0.464  Sum_probs=332.6

Q ss_pred             HHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc-c
Q 013235           60 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL-Y  138 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~  138 (447)
                      +.+++++.++++.+.... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|.+.. +
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~   81 (443)
T PRK08360          3 PLEIIERYSKVISPANRV-TYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYG   81 (443)
T ss_pred             HHHHHHHHHHhccccccc-ccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccccc
Confidence            456777777776655321 13489999999999999999999999999999999999999999999999998776553 4


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc-C
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV-Q  216 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~-~  216 (447)
                      .++...+|+++|++.+|.+.++|+|+||||||||+|||+||.+|+|++|+.+.++|||++.+++++++.. .++..+. .
T Consensus        82 ~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~  161 (443)
T PRK08360         82 FPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGEL  161 (443)
T ss_pred             CcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCC
Confidence            4788899999999999877789999999999999999999999999999999999999999999988743 2222211 3


Q ss_pred             CCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE
Q 013235          217 TGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll  291 (447)
                      .++.++++|+.++.++..+..    .+++.++++++.. .++++|+||+||+||++|.++++++|+++|+++|++||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~ll  241 (443)
T PRK08360        162 SDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILL  241 (443)
T ss_pred             CCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            577888888887766643211    2355567777542 24689999999999999999999999999999999999999


Q ss_pred             EEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       292 I~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      |+||||+||||+| ++|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.+
T Consensus       242 I~DEv~~g~gr~G-~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l  320 (443)
T PRK08360        242 VVDEVQSGLGRTG-KWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEI  320 (443)
T ss_pred             EEeccccCCCcCc-cchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999 688888899999999999999999999999999999998876668899999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++++.+++++++++|+++|+++.++++.+.+|||.|+|++++|++++.++.|+...+.++.+.|+++||++.
T Consensus       321 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~  393 (443)
T PRK08360        321 EEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVT  393 (443)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEe
Confidence            9889999999999999999999998999999999999999999987665555655567789999999999985

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=1.1e-71  Score=554.55  Aligned_cols=329  Identities=37%  Similarity=0.638  Sum_probs=292.0

Q ss_pred             EEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-ccccchHHHHHHHHHHHhCCCCCceEE
Q 013235           84 NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYLNHAIADFAEALASKMPGNLKVVF  162 (447)
Q Consensus        84 ~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~~~~~~elae~L~~~~~~~~~~v~  162 (447)
                      +|++++|+||||.||++||||+++++++++||+||+|.+|+++|++++.+.+ ..+.++...+|+++|.+.+|.+.++|+
T Consensus         1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~   80 (339)
T PF00202_consen    1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF   80 (339)
T ss_dssp             EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred             CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence            5789999999999999999999999999999999999999999999988765 467799999999999999988899999


Q ss_pred             EcCCHHHHHHHHHHHHH------hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCCCCC
Q 013235          163 FTNSGTEANELAIMMAR------LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGA  234 (447)
Q Consensus       163 ~~~sGseA~e~Aik~ar------~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~  234 (447)
                      |++||+||||.|||+||      ..++|.+|++|+++|||++.+++++++.+.++.....  .++.++|.|++.+.   .
T Consensus        81 f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~  157 (339)
T PF00202_consen   81 FANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAAD---E  157 (339)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHH---H
T ss_pred             eccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchh---h
Confidence            99999999999999999      7899999999999999999999999877665544332  56788888775430   0


Q ss_pred             ChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccC
Q 013235          235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG  314 (447)
Q Consensus       235 d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~g  314 (447)
                      ......+++++.+....++++||||+||+|+++|.++++++||++|+++|++||+++|+|||||||||+| ++|+++++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG-~~~a~~~~g  236 (339)
T PF00202_consen  158 EEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTG-KFFASEHYG  236 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS-SSSGHHHHT
T ss_pred             hHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccC-Cccceeccc
Confidence            1122344555555444456999999999999999999999999999999999999999999999999999 799999999


Q ss_pred             CCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013235          315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       315 v~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      ++|||+|+||+|+||+|+|++++++++++.+....+.+||++||++|++++++|++++++++.+++++++++|+++|+++
T Consensus       237 v~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l  316 (339)
T PF00202_consen  237 VDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLREL  316 (339)
T ss_dssp             SSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998777999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeeeEeecceeEEEEEe
Q 013235          395 KDKYGIIGDVRGRGFLLGVEFV  416 (447)
Q Consensus       395 ~~~~~~i~~vrg~Gl~~giel~  416 (447)
                      .++|+.+.+|||.|+|++|||+
T Consensus       317 ~~~~~~i~~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  317 AARYPLIGEVRGIGLMIGIELV  338 (339)
T ss_dssp             HHHTTTEEEEEEETTEEEEEES
T ss_pred             HHhCCCeEEEeeeCeEEEEEEE
Confidence            9999999999999999999995

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.1e-70  Score=561.47  Aligned_cols=382  Identities=37%  Similarity=0.551  Sum_probs=329.5

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-cc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VL  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~  137 (447)
                      ...+++++..+++.+....++ .|+++++++|+||||.|||+||||++|+++++|||+||+|++|+++|++++.+.+ ..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~   82 (433)
T PRK08117          4 TWSDLVERYPQLLAPALAKDH-PNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGV   82 (433)
T ss_pred             CHHHHHHHHHHHhhhhccccC-CCceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence            345677777666655432222 2489999999999999999999999999999999999999999999999987755 34


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCC-CCccccc-c
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNV-V  215 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~-~~~~~~~-~  215 (447)
                      +.++...+|+++|++.+|...++|+|+||||||||.|||+||.+++|++||+++++|||++.+++++++. ..++... +
T Consensus        83 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~  162 (433)
T PRK08117         83 IYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQP  162 (433)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCC
Confidence            6788999999999999987788999999999999999999999999999999999999999999988764 2233222 2


Q ss_pred             -CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          216 -QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       216 -~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                       ..++.+++.|+.++.+++.+.+    ...+++++++++ ..++++|+||+||+||++|+++++++||++|+++|++||+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~  242 (433)
T PRK08117        163 LLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGI  242 (433)
T ss_pred             CCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCC
Confidence             3678888888877766543322    235667777764 2356899999999999999999999999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      ++|+||||+||||+| ++|+++++|+.|||+||||++++|+|+|++++++++++.+....+.+||++||++|++++++|+
T Consensus       243 llI~DEv~tG~gr~G-~~~~~~~~gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~  321 (433)
T PRK08117        243 LLIFDEVQTGFGRTG-EWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLE  321 (433)
T ss_pred             EEEEecchhccCccc-cchhHhhcCCCCCEeehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            999999999999999 6888899999999999999999999999999999999988766788999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++++++++++++++++|+++|+++.++++.+.++||.|+|++++|.+++  ..|+......+.+.|+++||++.
T Consensus       322 ~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~--~~~~~~~~~~~~~~l~~~Gv~~~  394 (433)
T PRK08117        322 VIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPD--GEPDGDAVEKILDKCLEKGLLFY  394 (433)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCC--CCcchHHHHHHHHHHHHCCCEEe
Confidence            99888999999999999999999998889999999999999999998654  33444556778999999999874

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.1e-70  Score=561.53  Aligned_cols=350  Identities=24%  Similarity=0.311  Sum_probs=303.0

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCCc
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|... .+.++...+|+++|++..|.+++
T Consensus        22 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  101 (422)
T PRK05630         22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLD  101 (422)
T ss_pred             CCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcC
Confidence            58999999999999999999999999999999999999999999999999877654 35688899999999999987788


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCC-Ccccccc--CCCeEeecCCCCcCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--QTGVHHALNPDPYRG  230 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~--~~g~~~~~~p~~~~~  230 (447)
                      +|+|++|||||||.|||+||.++      +|.+||+++++|||.+.+++++++.. .++..+.  ..++..++.|.....
T Consensus       102 ~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  181 (422)
T PRK05630        102 HVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGS  181 (422)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCC
Confidence            99999999999999999999985      57899999999999999999998742 2222221  135566666532211


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                      .+ ++.+.+.+.+++++.    +++||||+||+ ||.||++++|++||++|+++|++||+++|+|||||||||+| ++|+
T Consensus       182 ~~-~~~~~~~~~~~~~~~----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG-~~~a  255 (422)
T PRK05630        182 SP-QEISEYLRSLELLID----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG-ELFA  255 (422)
T ss_pred             Ch-HHHHHHHHHHHHHHh----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc-hhhH
Confidence            11 234456677777764    48999999996 99999999999999999999999999999999999999999 7999


Q ss_pred             ccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcCC------cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHH
Q 013235          310 FEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV  382 (447)
Q Consensus       310 ~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~~------~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~  382 (447)
                      ++++|+.|||+||||+++||+ |+|++++++++++.+...      .|.+||++||++|++++++|++++++++.+++++
T Consensus       256 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~  335 (422)
T PRK05630        256 TLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKR  335 (422)
T ss_pred             HHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            999999999999999999995 999999999999987532      4789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++|+++|+++. +++.+.+|||+|+|++|+|.++.        .+..+.+.|+++||++..
T Consensus       336 ~g~~l~~~L~~l~-~~~~v~~vRg~Gl~~~ie~~~~~--------~~~~~~~~~~~~Gl~~~~  389 (422)
T PRK05630        336 IEAELIAGLSPLA-HLPGVADVRVLGAIGVVEMEQPV--------DMEEATQAAVDHGVWLRP  389 (422)
T ss_pred             HHHHHHHHHHHhh-cCCCeeeeeccccEEEEEECCcc--------cHHHHHHHHHHCCeEEEe
Confidence            9999999999875 48889999999999999996431        135788999999999863

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=8.8e-70  Score=557.14  Aligned_cols=376  Identities=27%  Similarity=0.394  Sum_probs=316.9

Q ss_pred             CCHHHHHHHHhhhcCCccc---ccc-----CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235           58 PSADEILAKRKTFLSPSLF---HLY-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~  129 (447)
                      +++.+++++.+++++....   +++     ..|+++++++|+||||.|||+||||.+|++++++||+||+|.+|+.+|++
T Consensus         4 ~~s~~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~   83 (428)
T PRK12389          4 TKSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE   83 (428)
T ss_pred             hhhHHHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHH
Confidence            5778899999988865432   222     35899999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      ++.+  ..++++...+|+++|.+.+|. .++|+|+||||||||.|+|+||.+|+|.+||+|+++|||++.+++++++...
T Consensus        84 ~~~~--~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~  160 (428)
T PRK12389         84 NGVL--YGTPTELEIEFAKMLKEAIPS-LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGP  160 (428)
T ss_pred             hCCc--cCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcc
Confidence            8754  235788999999999999884 7899999999999999999999999999999999999999999999887543


Q ss_pred             ccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      ++...+. .++.....|+.++.+++ |    .+.++++++.. ++++|+||+||+||++|+++||++||++|+++|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~l~~~l~~~-~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g  234 (428)
T PRK12389        161 STLGTPDSAGVPKSIAQEVITVPFN-D----IEALKEALDKW-GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAG  234 (428)
T ss_pred             cccCCCCCCCCCCcccCceEEcCCC-C----HHHHHHHHHhc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            3221111 12221122233333442 3    56777777644 3689999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---CcccccCCCChHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~~~~~T~~~np~a~aaal  365 (447)
                      +++|+||||||| |+| .+|+++++|++|||+||||+|+||+|+|++++++++++.+..   ..|++||+|||++|++++
T Consensus       235 ~llI~DEV~tG~-Rt~-~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaal  312 (428)
T PRK12389        235 ALVIYDEVITAF-RFM-YGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGI  312 (428)
T ss_pred             CEEEEEcccccc-ccC-cchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHH
Confidence            999999999999 998 577788999999999999999999999999999999998853   247799999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhC
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGI  439 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~  439 (447)
                      ++|++++++++++++++++++|+++|+++.++++.+.++ |+.| |++++|.+++..     ..++......+.+.|+++
T Consensus       313 a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  391 (428)
T PRK12389        313 ACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ  391 (428)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999988887 7888 889999765321     112334567899999999


Q ss_pred             Cceeec
Q 013235          440 CALFFS  445 (447)
Q Consensus       440 Gvlv~~  445 (447)
                      ||++.+
T Consensus       392 Gv~~~~  397 (428)
T PRK12389        392 GINLAP  397 (428)
T ss_pred             CcEeec
Confidence            999864

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=5e-70  Score=560.17  Aligned_cols=360  Identities=29%  Similarity=0.434  Sum_probs=312.2

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCC
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~  158 (447)
                      ..|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+++|++++.|.+. .+.++...+|+++|++.+|.++
T Consensus        30 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~  109 (445)
T PRK09221         30 AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGL  109 (445)
T ss_pred             CCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999999877654 3678899999999999998778


Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCC-CcC
Q 013235          159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPD-PYR  229 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~-~~~  229 (447)
                      ++|+|+||||||||.|+|+||.++      +|.+||+|+++|||++.+++++++...++..+.  ..++.+++.|+ .++
T Consensus       110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (445)
T PRK09221        110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPE  189 (445)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccc
Confidence            899999999999999999999985      477999999999999999999988655443322  24667777765 455


Q ss_pred             CCCCCCh----HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC
Q 013235          230 GVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS  305 (447)
Q Consensus       230 ~~~~~d~----~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~  305 (447)
                      +++....    +.+.++++++++...++++|+||+||+||++|++.+|++||++|+++|++||+++|+|||||||||+| 
T Consensus       190 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG-  268 (445)
T PRK09221        190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG-  268 (445)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc-
Confidence            4443322    23456788888765557899999999999999999999999999999999999999999999999999 


Q ss_pred             CcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-------cccccCCCChHHHHHHHHHHHHHhhhhHH
Q 013235          306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQ  377 (447)
Q Consensus       306 ~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-------~~~~T~~~np~a~aaala~L~~i~~~~l~  377 (447)
                      ++|+++++|+.|||+|+||+++|| +|+|++++++++++.+...       .|.+||++||++|++++++|++++++++.
T Consensus       269 ~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~  348 (445)
T PRK09221        269 AAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLF  348 (445)
T ss_pred             hhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHH
Confidence            799999999999999999999999 7999999999999987531       36689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++++++++|+++|+++. +++.+.+|||.|+|++++|++....  + ...+.++.+.|+++||++.
T Consensus       349 ~~~~~~g~~l~~~l~~l~-~~~~v~~vrg~Gl~~~v~~~~~~~~--~-~~~~~~~~~~~~~~Gv~~~  411 (445)
T PRK09221        349 ERAAELAPYFEDAVHSLK-GLPHVIDIRNIGLVAGIELAPRPGA--P-GARGYEAFMKCFEKGLLVR  411 (445)
T ss_pred             HHHHHHHHHHHHHHHhhc-cCCCEEEEecCceEEEEEEeccccc--c-cchHHHHHHHHHHCCeEEe
Confidence            999999999999999984 6888999999999999999753211  1 1234678899999999985

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4.8e-70  Score=557.40  Aligned_cols=370  Identities=24%  Similarity=0.356  Sum_probs=311.9

Q ss_pred             HHHHHHhhhcCCccccc-cCCC-eEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cc
Q 013235           62 EILAKRKTFLSPSLFHL-YSKP-LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LY  138 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~~-~~~p-~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~  138 (447)
                      ++++...+++++..... ...| +++++|+|+||||.|||+||||++|++++++||+||+|++|+++|++++.|... .+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~   84 (429)
T PRK06173          5 ELLELDRQHIWHPYSSVTDPIPVYPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGF   84 (429)
T ss_pred             HHhhhhhcccccccccccccCCCceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcccccc
Confidence            44555556655433221 1234 468999999999999999999999999999999999999999999999877554 46


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCC-Ccc
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQS-NWK  211 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~  211 (447)
                      .++...+|+++|++.+|.++++|+|+||||||||+|||+||.+      ++|.+||+++++|||.+.+++++++.. .++
T Consensus        85 ~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~  164 (429)
T PRK06173         85 THEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMH  164 (429)
T ss_pred             CCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhh
Confidence            7899999999999999877899999999999999999999998      468899999999999999999987642 233


Q ss_pred             cccc--CCCeEeecCCCCcCCCCCCC-hHHHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHh
Q 013235          212 FNVV--QTGVHHALNPDPYRGVFGAD-GEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d-~~~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                      ..+.  ..++.+++.|+.+   +..+ .+.+++.++++++.. ++++||||+||+ ||+||++++|++|+++|+++|++|
T Consensus       165 ~~~~~~~~~~~~~~~p~~~---~~~~~~~~~l~~l~~~i~~~-~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~  240 (429)
T PRK06173        165 GLFNHSLPVQYFLPQPSIK---FGEEWNDEAIEPLQDLLEQK-GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY  240 (429)
T ss_pred             hcccccCCCCeEeCCCCcc---cchhHHHHHHHHHHHHHHhC-CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence            2222  2456667666543   1111 123467788888643 468999999997 999999999999999999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcC-----CcccccCCCChHHH
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR-----RNYFNTFGGNPVCT  361 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~-----~~~~~T~~~np~a~  361 (447)
                      |+++|+|||||||||+| ++|+++++|+.|||+||||+++||+ |+|++++++++++.+..     ..|++||++||++|
T Consensus       241 g~llI~DEv~tG~GrtG-~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~  319 (429)
T PRK06173        241 GVLLIFDEIATGFGRTG-KLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLAC  319 (429)
T ss_pred             CCeEEecchhcCCCcCC-cchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHH
Confidence            99999999999999999 7999999999999999999999994 99999999999998853     24778999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       362 aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      ++++++|++++++++.+++++++++|+++|+++ .+++.+.+|||.|+|++|++.++.        .+..+.+.|+++||
T Consensus       320 aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~~--------~~~~i~~~l~e~Gi  390 (429)
T PRK06173        320 AIAAESIRLLLESPWQQNIQRIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMKEPV--------NMATLQPRFVEHGI  390 (429)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeCCcc--------cHHHHHHHHHHCCe
Confidence            999999999999999999999999999999987 568889999999999999995431        24578899999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      ++..
T Consensus       391 ~v~~  394 (429)
T PRK06173        391 WVRP  394 (429)
T ss_pred             EEEe
Confidence            9864

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=1.2e-69  Score=555.33  Aligned_cols=376  Identities=24%  Similarity=0.340  Sum_probs=308.5

Q ss_pred             CCCCCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHH--
Q 013235           50 YSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ--  127 (447)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~--  127 (447)
                      --+.+.+++++.+++++..+++...   .+..|+.+++|+|+||||.|||+||||++|++++++||+||+|++|+++|  
T Consensus        12 ~~~~~~~~~~s~~l~~~~~~~~~~~---~~~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~   88 (464)
T TIGR00699        12 LMKTEIPGPKSKAAMKQLNEVFDAR---AVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEM   88 (464)
T ss_pred             ccccCCCCccHHHHHHHHHhhhccc---CcccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHH
Confidence            3344566788999999888875332   12459999999999999999999999999999999999999999999985  


Q ss_pred             HHhcccccccccchHHHHHHHHHHH----hCCCCCceEEEcCCHHHHHHHHHHHHHhhcC--------------------
Q 013235          128 IKRIQHSTVLYLNHAIADFAEALAS----KMPGNLKVVFFTNSGTEANELAIMMARLYTG--------------------  183 (447)
Q Consensus       128 l~~~~~~~~~~~~~~~~elae~L~~----~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~--------------------  183 (447)
                      ...+.+.. .+.++...+|+++|.+    .+|.++++|+|+||||||||+|||+||.|++                    
T Consensus        89 ~~~l~~~~-~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~  167 (464)
T TIGR00699        89 ATTLINRP-ALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMD  167 (464)
T ss_pred             HHhhcccc-cCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence            44554433 3567778889999854    6777788999999999999999999998732                    


Q ss_pred             -------CCeEEEEcCCcccCchhhhhccCCCCccc-cccCCCeEeecCCCCcCCCCCC-----C--hHHHHHHHHHHHH
Q 013235          184 -------CNDIISLRNAYHGNAAGTMGATAQSNWKF-NVVQTGVHHALNPDPYRGVFGA-----D--GEMYAKDVQDLID  248 (447)
Q Consensus       184 -------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~-~~~~~g~~~~~~p~~~~~~~~~-----d--~~~~~~~le~~i~  248 (447)
                             |.+||+|+++|||++.+++++++.+.++. ..+..++.++++|+ +++++..     +  ...++++++++++
T Consensus       168 ~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~l~~l~~~l~  246 (464)
T TIGR00699       168 NQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPS-LKYPLEEHVKENAKEEQRCLEEVEDLIK  246 (464)
T ss_pred             ccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCC-cccccccccccchhHHHHHHHHHHHHHH
Confidence                   23899999999999999999988654332 22235667777775 3333221     1  2235677888887


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCC--CCEEEeeccc
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMAKGI  326 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~--pDivt~sK~l  326 (447)
                      .. ++++||||+||+||++|++++|++||++|+++|++||++||+|||||||||+| .+|+++++|+.  |||+|+||+|
T Consensus       247 ~~-~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG-~~fa~e~~gv~~~PDi~t~gK~l  324 (464)
T TIGR00699       247 KW-HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATG-KFWAHEHWNLDDPPDMVTFSKKF  324 (464)
T ss_pred             hc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCc-chhHHHhcCCCCCCCEEEehhhh
Confidence            53 45799999999999999999999999999999999999999999999999999 79999999997  9999999999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeE
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDV  404 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~v  404 (447)
                      + ||+++    .+ +.+.......|++||++||++|++++++|++++++++.++++++|++|+++|+++.++++ .+++|
T Consensus       325 g~gG~~~----~~-~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~v  399 (464)
T TIGR00699       325 QTAGYFF----HD-PAFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNL  399 (464)
T ss_pred             ccCCccc----cc-hhccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Confidence            6 67643    22 222211223478999999999999999999999999999999999999999999998998 79999


Q ss_pred             e--ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          405 R--GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       405 r--g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |  |.|+|++|++.        +...+.++.+.|+++||++..
T Consensus       400 Rg~G~Glm~gie~~--------~~~~~~~i~~~~~~~Gvl~~~  434 (464)
T TIGR00699       400 RGKGRGTFIAWDTP--------DEAKRDKLLKKARNNGVNIGG  434 (464)
T ss_pred             cccCeEEEEEEecC--------CHHHHHHHHHHHHHCCcEEec
Confidence            9  99999999983        223467899999999999863

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-69  Score=553.12  Aligned_cols=378  Identities=32%  Similarity=0.443  Sum_probs=324.1

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYL  139 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~  139 (447)
                      .+++++..+++......  ..|+++++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.|... .++
T Consensus         4 ~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~   81 (421)
T PRK06777          4 SELNQRRLEATPRGVGV--MCDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVP   81 (421)
T ss_pred             HHHHHHHHHhcccccCc--CCCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccC
Confidence            45566655666444332  238999999999999999999999999999999999999999999999999876543 356


Q ss_pred             chHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc--
Q 013235          140 NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--  215 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~--  215 (447)
                      ++...+|+++|++..|. +.++++|+||||||||.|+|+||.+|+|.+||+|+++|||++.+++++++.. .++..+.  
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~  161 (421)
T PRK06777         82 YASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPF  161 (421)
T ss_pred             ChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCC
Confidence            88889999999999874 4678999999999999999999999999999999999999999999998752 3433321  


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                      ..++.++++|+.+++   ...+..++.++++++. ..++++|+||+||+||++|+.++|++||++|+++|++||+++|+|
T Consensus       162 ~~~~~~~~~p~~~~~---~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~D  238 (421)
T PRK06777        162 PGSIFHALYPNELHG---VSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIAD  238 (421)
T ss_pred             CCCcEEcCCCccccC---cCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            246677777765432   1223346678887763 235689999999999999999999999999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~  374 (447)
                      ||||||||+| ++|+++++++.||++|+||++++|+|+|++++++++++.+....+.+||++||++|++++++|++++++
T Consensus       239 Ev~tg~gr~g-~~~~~~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~  317 (421)
T PRK06777        239 EVQTGFARTG-KLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEE  317 (421)
T ss_pred             chhhCCccCC-chhhhhhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            9999999999 688999999999999999999999999999999999998877778899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       375 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+++++++++|+++|+++.++++.+.+|||.|+|+++++.++. ...|+.+.+..+.+.|+++||++.+
T Consensus       318 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~i~~  387 (421)
T PRK06777        318 KLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQ-TGKPSPEFTRQYQRQALEEGLLLLS  387 (421)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCc-cCCccHHHHHHHHHHHHhCCeEEee
Confidence            999999999999999999999889999999999999999997532 2234455667888899999999864

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=1.3e-69  Score=555.55  Aligned_cols=365  Identities=33%  Similarity=0.475  Sum_probs=319.4

Q ss_pred             cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCC-
Q 013235           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG-  156 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~-  156 (447)
                      .+.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|... .+.++...+|+++|++.+|. 
T Consensus        13 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~   92 (420)
T TIGR00700        13 VTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGS   92 (420)
T ss_pred             CCCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCC
Confidence            3458999999999999999999999999999999999999999999999999876544 35678889999999999984 


Q ss_pred             CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc--CCCeEeecCCCCcCCCCC
Q 013235          157 NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--QTGVHHALNPDPYRGVFG  233 (447)
Q Consensus       157 ~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~--~~g~~~~~~p~~~~~~~~  233 (447)
                      +.++|+|+||||||||.|+|+||.+|+|.+||+++++|||++.+++++++.. .++..+.  ..++..+++|++++.+++
T Consensus        93 ~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (420)
T TIGR00700        93 GPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLL  172 (420)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccc
Confidence            3578999999999999999999999999999999999999999999988753 2333221  256778888887775543


Q ss_pred             CC---hHHHHHHHHHHHH-ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          234 AD---GEMYAKDVQDLID-FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       234 ~d---~~~~~~~le~~i~-~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                      ..   ...+++.+++++. ...++++||||+||+||++|+++++++|+++|+++|++||+++|+||||+||||+| .+|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g-~~~a  251 (420)
T TIGR00700       173 DKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG-AMFA  251 (420)
T ss_pred             ccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc-hhHH
Confidence            21   1123556777764 22357999999999999999999999999999999999999999999999999999 6889


Q ss_pred             ccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235          310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       310 ~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~  389 (447)
                      ++++++.|||++|||++++|+|+|++++++++++.+....+.+||++||++|++++++|++++++++.+++++++++|++
T Consensus       252 ~~~~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~  331 (420)
T TIGR00700       252 CEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTD  331 (420)
T ss_pred             HhhcCCCCCEEEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998876678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +|+++.++++.+.+|||.|+|+++++.++ .+..|+...+.++.+.|+++||++.+
T Consensus       332 ~L~~l~~~~~~~~~vrg~G~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~Gv~i~p  386 (420)
T TIGR00700       332 RLTTLKAVDPRIGDVRGLGAMIAVELVDP-GTTEPDAGLAERIATAAHAAGLLLLT  386 (420)
T ss_pred             HHHHHHhhCCCEEEeeccceEEEEEEecC-CCCCccHHHHHHHHHHHHHCCeEEec
Confidence            99999998998999999999999999753 23345566678899999999999864

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=9.8e-70  Score=554.51  Aligned_cols=351  Identities=26%  Similarity=0.364  Sum_probs=303.9

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCCc
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      .|+.+++|+|+|+||.|||+||||++|++++++||+||+|++|+++|++++.+... .+.++...+|+++|++.+|.+++
T Consensus        25 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~  104 (428)
T PRK07986         25 PVYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLE  104 (428)
T ss_pred             CCeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcC
Confidence            34789999999999999999999999999999999999999999999999876554 35788999999999999987788


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhh-----cCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc--CCCeEeecCCCCcCC-
Q 013235          160 VVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--QTGVHHALNPDPYRG-  230 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~-----t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~--~~g~~~~~~p~~~~~-  230 (447)
                      +|+|+||||||||.|||+||.+     ++|.+||+++++|||.+.+++++++.. .++..+.  .+++.+++.|+.+.. 
T Consensus       105 ~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  184 (428)
T PRK07986        105 CVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDG  184 (428)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccch
Confidence            9999999999999999999998     678999999999999999999997642 2322221  245666666643211 


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                      .+   ....+++++++++.. ++++++||+||+ |+.||+++++++||++|+++|++||+++|+|||||||||+| ++|+
T Consensus       185 ~~---~~~d~~~l~~~l~~~-~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG-~~fa  259 (428)
T PRK07986        185 EW---DERDIAPFARLMAAH-RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG-KLFA  259 (428)
T ss_pred             hh---HHHHHHHHHHHHHhC-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC-Ceee
Confidence            01   012256777777643 468999999996 99999999999999999999999999999999999999999 7999


Q ss_pred             ccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-----cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013235          310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVV  383 (447)
Q Consensus       310 ~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-----~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~  383 (447)
                      ++++|++|||+||||+++|| +|+|++++++++++.+...     .|.+||+|||++|++++++|+++++++++++++++
T Consensus       260 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~  339 (428)
T PRK07986        260 CEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAI  339 (428)
T ss_pred             ecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999 5999999999999998653     27799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++|+++|+++. +++.+.+|||.|+|+++++.++.        .+..+.+.|+++||++.+
T Consensus       340 g~~l~~~l~~l~-~~~~i~~vRg~Gl~~~ve~~~~~--------~~~~~~~~l~~~Gl~~~~  392 (428)
T PRK07986        340 EAQLREELAPLR-DAPMVADVRVLGAIGVVETTRPV--------NMAALQRFFVEQGVWIRP  392 (428)
T ss_pred             HHHHHHHHHHHh-cCCCEEeEeccceEEEEEeCCcc--------cHHHHHHHHHHCCcEEEe
Confidence            999999999986 48889999999999999996431        145789999999999864

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=3e-69  Score=552.13  Aligned_cols=376  Identities=28%  Similarity=0.408  Sum_probs=321.6

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccc
Q 013235           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLN  140 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~  140 (447)
                      ++++....++.+...  ...|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|... .+.+
T Consensus         5 ~~~~~~~~~~~~~~~--~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~   82 (421)
T PRK09792          5 EFHQRRLSATPRGVG--VMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPY   82 (421)
T ss_pred             HHHHHHHhhcccccc--cCCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCC
Confidence            455544444433322  2237899999999999999999999999999999999999999999999999876543 3568


Q ss_pred             hHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc--C
Q 013235          141 HAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--Q  216 (447)
Q Consensus       141 ~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~--~  216 (447)
                      +...+|+++|++..|. +.++++|+||||||||.|+|+||.+|+|.+||+++++|||++.+++++++.. .++..+.  .
T Consensus        83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~  162 (421)
T PRK09792         83 ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFP  162 (421)
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCC
Confidence            8889999999999874 3568999999999999999999999999999999999999999999998742 3443322  2


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      .++.++++|+.+++   .+....++.++++++.. .++++|+||+||+|+++|++++|++|+++|+++|++||+++|+||
T Consensus       163 ~~~~~v~~p~~~~~---~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  239 (421)
T PRK09792        163 GSVYHVPYPSDLHG---ISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADE  239 (421)
T ss_pred             CCcEEcCCCccccc---ccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            46777777765543   12233467788887642 346899999999999999999999999999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhh
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK  375 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~  375 (447)
                      |||||||+| .+|+++++++.|||+||||+|+||+|+|++++++++++.+....+.+||++||++|++++++|+++++++
T Consensus       240 v~tg~gr~G-~~~a~~~~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~  318 (421)
T PRK09792        240 VQSGFARTG-KLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKES  318 (421)
T ss_pred             cccCCCCCC-chhHHHhcCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999 6899999999999999999999999999999999999988776788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       376 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++++++++++++++.|+++.++++.+.++||.|+|++++|.++. .+.|+.....++++.|+++||++.
T Consensus       319 ~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~-~~~~~~~~~~~l~~~~~~~Gv~i~  386 (421)
T PRK09792        319 LCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQ-TGEPSAAIAQKIQQRALAQGLLLL  386 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCc-cCCcchHHHHHHHHHHHHCCcEEe
Confidence            99999999999999999999999999999999999999997432 233444456789999999999985

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=6.7e-69  Score=553.00  Aligned_cols=375  Identities=25%  Similarity=0.359  Sum_probs=309.3

Q ss_pred             CCCHHHHHHHHhhhcCCccccc---c----CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235           57 GPSADEILAKRKTFLSPSLFHL---Y----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~---~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~  129 (447)
                      .+++.+++++.+++++......   +    ..|+++++|+|+||||+|||+||||.+|++++++||+||+|.+|+.+|++
T Consensus        50 ~~~S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~  129 (474)
T PLN02482         50 TTKSEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMK  129 (474)
T ss_pred             ChHHHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHh
Confidence            4678999999999986543221   1    35899999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      ++.+.  ..+++...+|+|+|++.+|. .++|+|+||||||++.|||+||.+|||.+||.|+++|||++...+..+....
T Consensus       130 ~~~~~--~~~~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~  206 (474)
T PLN02482        130 KGTSF--GAPCLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGV  206 (474)
T ss_pred             hCCCC--CCCCHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCc
Confidence            87542  34688889999999999986 7899999999999999999999999999999999999998865443322111


Q ss_pred             cccccc-CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          210 WKFNVV-QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       210 ~~~~~~-~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      .....+ ..++.....++....+|+ |    +++++++++.. ++++|+||+||+|+++|+++|+++||++|+++|++||
T Consensus       207 ~~~~~~~~~g~~~~~~~~~~~~~~n-d----~~~l~~~l~~~-~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g  280 (474)
T PLN02482        207 ATLGLPDSPGVPKAATSATLTAPYN-D----LEAVKKLFEAN-KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENG  280 (474)
T ss_pred             cccCCCCCCCCCCCCCCCeEEecCC-C----hHHHHHHHHhC-CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            111111 123222222233344553 4    56788887653 5689999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---CcccccCCCChHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~~~~~T~~~np~a~aaal  365 (447)
                      +++|+|||+||| |+| .+|+++++|++|||+||||+||||+|+|++++++++++.+..   ..|.+||++||++|++++
T Consensus       281 ~lLI~DEV~tGf-R~g-~~ga~~~~gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAal  358 (474)
T PLN02482        281 ALLVFDEVMTGF-RIA-YGGAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI  358 (474)
T ss_pred             CEEEEeccccCe-ecC-cchHhHHhCCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHH
Confidence            999999999999 999 688889999999999999999999999999999999998863   236789999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC--Ce-eeEeecceeEEEEEeeCCC-----CCCCCHHHHHHHHHHHH
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG--II-GDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMK  437 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~--~i-~~vrg~Gl~~giel~~~~~-----~~~p~~~~~~~~~~~l~  437 (447)
                      ++|++++++++.+++++++++|+++|+++..+++  .+ .+++|   |++++|.+++.     .+.++.....++++.|+
T Consensus       359 a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~  435 (474)
T PLN02482        359 HTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGML  435 (474)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHH
Confidence            9999999899999999999999999999988864  33 34554   88999986532     12234455678999999


Q ss_pred             hCCceeec
Q 013235          438 GICALFFS  445 (447)
Q Consensus       438 ~~Gvlv~~  445 (447)
                      ++||++.+
T Consensus       436 ~~Gv~~~~  443 (474)
T PLN02482        436 EEGVYLAP  443 (474)
T ss_pred             HCCeEEec
Confidence            99999864

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.9e-69  Score=515.54  Aligned_cols=353  Identities=32%  Similarity=0.481  Sum_probs=306.3

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC-C
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-G  156 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~-~  156 (447)
                      +.+.|+++.+++|+.+||.||++||||+++|++..+||+||+|.+|+.+|+.++.|+++.+.+....+++++|.+... .
T Consensus        35 ~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~  114 (433)
T KOG1401|consen   35 YARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKG  114 (433)
T ss_pred             cCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCC
Confidence            456789999999999999999999999999999999999999999999999999999887776668999999998873 3


Q ss_pred             CCceEEEcCCHHHHHHHHHHHHHhhcCCC------eEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCc
Q 013235          157 NLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPY  228 (447)
Q Consensus       157 ~~~~v~~~~sGseA~e~Aik~ar~~t~~~------~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~  228 (447)
                      ..++|+|+||||||||.|||+||+.+..+      ++|.|+++|||++.+++++++.+.|+..+.+  +++....+    
T Consensus       115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y----  190 (433)
T KOG1401|consen  115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY----  190 (433)
T ss_pred             CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeeccc----
Confidence            47899999999999999999999987654      4999999999999999999988877765432  34444332    


Q ss_pred             CCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcc
Q 013235          229 RGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW  308 (447)
Q Consensus       229 ~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~  308 (447)
                           +|    ..+++++++.+ .++|||||+||+||+||++++.|+|+..|+++|+++|++||+|||||||||+| ..|
T Consensus       191 -----nd----~t~l~k~~~~h-~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g-~~~  259 (433)
T KOG1401|consen  191 -----ND----STALEKLFESH-KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG-YGW  259 (433)
T ss_pred             -----CC----HHHHHHHHHhC-CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc-hHH
Confidence                 33    67888988875 45899999999999999999999999999999999999999999999999999 799


Q ss_pred             cccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcc---cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013235          309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY---FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (447)
Q Consensus       309 ~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~---~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~  385 (447)
                      ++++++++|||.|++|.|+||+|+||+++++++++.+....+   ++||+|||++|.++..+|+.+.+++..+++...++
T Consensus       260 a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k  339 (433)
T KOG1401|consen  260 AQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGK  339 (433)
T ss_pred             HHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988765   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCe-eeEeecceeEEEEEeeCCCCCCCC----HHHHHHHHHHHHhCCceeec
Q 013235          386 YLKERLTALKDKYGII-GDVRGRGFLLGVEFVTDRQLKTPA----KAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i-~~vrg~Gl~~giel~~~~~~~~p~----~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|++.|.+...+.+.. ...+|+|+++|+++..+.......    ......+...+++.|+++.+
T Consensus       340 ~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P  404 (433)
T KOG1401|consen  340 ELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAP  404 (433)
T ss_pred             HHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEEec
Confidence            9999999998888654 344999999999997543221111    11223444555667887765

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-67  Score=519.16  Aligned_cols=379  Identities=26%  Similarity=0.394  Sum_probs=314.8

Q ss_pred             CCCHHHHHHHHhhhcCCccc----cccC---CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235           57 GPSADEILAKRKTFLSPSLF----HLYS---KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~----~~~~---~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~  129 (447)
                      .++++++.++.+++++.+..    .+..   .|+++.+|+|+||||+|||+||||+.+++.+.|||+||.|++|+++|++
T Consensus         4 ~~~S~~l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~   83 (432)
T COG0001           4 FPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLE   83 (432)
T ss_pred             ccchHHHHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHH
Confidence            35788999999988864432    1222   6999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      +...  ...+++...+++|.|.+++|. .+.|.|+||||||+..|||+||.+|||++||.|+|+|||+.+..+.-.+...
T Consensus        84 ~G~~--fg~Pte~Ei~~Aell~~~~p~-~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~  160 (432)
T COG0001          84 RGLS--FGAPTELEVELAELLIERVPS-IEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGA  160 (432)
T ss_pred             hcCC--CCCCCHHHHHHHHHHHHhcCc-ccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCc
Confidence            9733  344788899999999999985 6899999999999999999999999999999999999999999886544222


Q ss_pred             ccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      -.+..|. .|++.-...+..-.+| ||    ++.+++++++. ++++||||+||++|+.|.++|.++||++|+++|++||
T Consensus       161 ~t~g~p~s~Gvp~~~a~~ti~~~y-ND----~~al~~~~~~~-g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G  234 (432)
T COG0001         161 ATLGSPSSPGVPADVAKHTLVLPY-ND----LEALEEAFEEY-GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHG  234 (432)
T ss_pred             ccCCCCCCCCCChhhhccEEEecC-CC----HHHHHHHHHHc-CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            2222122 3332211111112233 45    77888888764 5699999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCc---ccccCCCChHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN---YFNTFGGNPVCTAAGH  365 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~---~~~T~~~np~a~aaal  365 (447)
                      ++||+|||.||| |.. ...+.++||++||+.||||.+|||+|+|++.+++++|+.+....   +.+||+|||++++|++
T Consensus       235 ~lLI~DEViTGF-R~~-~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~  312 (432)
T COG0001         235 ALLIFDEVITGF-RVA-LGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGL  312 (432)
T ss_pred             cEEEEecchhhc-ccC-CcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHH
Confidence            999999999999 443 23345789999999999999999999999999999999887643   5599999999999999


Q ss_pred             HHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCC-----CCCHHHHHHHHHHHHhC
Q 013235          366 AVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TPAKAETLYIMDKMKGI  439 (447)
Q Consensus       366 a~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~-----~p~~~~~~~~~~~l~~~  439 (447)
                      ++|+.++++ ...+++.+.+++|+++|++..+++++...|.+.|.|+.|.|.+.+...     ..+.+...++...|+++
T Consensus       313 atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~  392 (432)
T COG0001         313 ATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR  392 (432)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC
Confidence            999999874 589999999999999999999999999999999999999998754221     11223455677799999


Q ss_pred             Cceeecc
Q 013235          440 CALFFSQ  446 (447)
Q Consensus       440 Gvlv~~~  446 (447)
                      ||++.++
T Consensus       393 GV~l~ps  399 (432)
T COG0001         393 GVYLAPS  399 (432)
T ss_pred             CcccCCc
Confidence            9998753

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=3.6e-68  Score=531.72  Aligned_cols=324  Identities=33%  Similarity=0.567  Sum_probs=285.0

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN  157 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~  157 (447)
                      .|+.|+.+++|+|+||||.|||+||||.+|+++.++||+||+|++|+++|++++.+....+.++...+|+++|++..  +
T Consensus         3 ~~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~--~   80 (364)
T PRK04013          3 LYRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV--N   80 (364)
T ss_pred             CcCCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc--C
Confidence            46789999999999999999999999999999999999999999999999999877666788999999999999987  3


Q ss_pred             CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCCCCCC
Q 013235          158 LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGAD  235 (447)
Q Consensus       158 ~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d  235 (447)
                      .++++|+||||||+|+|+|+||.+++|++||+++++|||++.+++++++.+.++..+.+  .++..++++         |
T Consensus        81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~---------d  151 (364)
T PRK04013         81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN---------D  151 (364)
T ss_pred             CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC---------C
Confidence            57899999999999999999999999999999999999999999999886655443322  345444432         2


Q ss_pred             hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC
Q 013235          236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV  315 (447)
Q Consensus       236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv  315 (447)
                          .+.+++.+.    +++++||+||+||++|++++|++||++|+++|++||+++|+||||||| |+| ++|+++++++
T Consensus       152 ----~~~l~~~i~----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG-~~~a~~~~gv  221 (364)
T PRK04013        152 ----VEAAKEAIT----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG-KFLAIEHYKV  221 (364)
T ss_pred             ----HHHHHHHhc----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCC-chhHHHhcCC
Confidence                456676664    489999999999999999999999999999999999999999999999 999 7999999999


Q ss_pred             CCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235          316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       316 ~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      .|||+||||+++||+|+|+++.++++    ....|.+||+|||++|++++++|++|+++++.++++++       |+++.
T Consensus       222 ~PDiv~~gK~lggG~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~  290 (364)
T PRK04013        222 EPDIVTMGKGIGNGVPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIK  290 (364)
T ss_pred             CCCEEEecccccCCceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhc
Confidence            99999999999999999999999886    23458899999999999999999999999999998875       33442


Q ss_pred             HhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       396 ~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                        .+.+.+|||.|+|+++||.++          +..+.+.|+++||++..
T Consensus       291 --~~~v~~vRG~Gl~~gve~~~~----------~~~i~~~~~~~Gll~~~  328 (364)
T PRK04013        291 --GERVVTTRGRGLMIGIVLKKP----------VGKYVEELQNRGYLVHT  328 (364)
T ss_pred             --cCcceeeeeCcEEEEEEeCCc----------HHHHHHHHHhCCcEEee
Confidence              267899999999999999531          35688999999999864

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2e-67  Score=535.65  Aligned_cols=342  Identities=30%  Similarity=0.517  Sum_probs=303.0

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      ..|+++++++|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|....+.++...+|+++|++..|. .+
T Consensus        21 ~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~-~~   99 (408)
T PRK04612         21 PRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF-AE   99 (408)
T ss_pred             CCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC-CC
Confidence            45899999999999999999999999999999999999999999999999987766556788899999999999875 47


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc-------CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYT-------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRG  230 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t-------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~  230 (447)
                      +|+|++|||||||.|||+||.|+       +|++||+|+++|||++.+++++++.+.++..+.  ..++..+++|     
T Consensus       100 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----  174 (408)
T PRK04612        100 KVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN-----  174 (408)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCC-----
Confidence            89999999999999999999984       356899999999999999999988665554332  1344444433     


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc
Q 013235          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (447)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~  310 (447)
                          |    .+.+++++.   ++++++||+||+|++||+++++++|+++|+++|++||+++|+||||+||||+| .+|+.
T Consensus       175 ----d----~~~l~~~~~---~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~a~  242 (408)
T PRK04612        175 ----D----VEALEAAMA---GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG-TLFAH  242 (408)
T ss_pred             ----C----HHHHHHhhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-chhhh
Confidence                2    466777764   45899999999999999999999999999999999999999999999999999 68888


Q ss_pred             cccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013235          311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER  390 (447)
Q Consensus       311 ~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~  390 (447)
                      +++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|++++++++.+++++++++|+++
T Consensus       243 ~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~  322 (408)
T PRK04612        243 WQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAG  322 (408)
T ss_pred             hhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999988776788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       391 L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |+++.++++.+.+|||.|+|++++|+++.      ...+..+.+.|+++||++.+
T Consensus       323 l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~------~~~a~~i~~~l~~~Gvlv~~  371 (408)
T PRK04612        323 LEALNAEFGVFAQVRGRGLMLGAVLAPAH------AGQAGAILDLAAEHGLLLLQ  371 (408)
T ss_pred             HHHHHhhCCCeeeeeccceEEEEEecCch------hhHHHHHHHHHHHCCeEEee
Confidence            99999999999999999999999997421      12356788999999999853

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=3.3e-67  Score=536.22  Aligned_cols=375  Identities=22%  Similarity=0.287  Sum_probs=309.6

Q ss_pred             CCHHHHHHHHhhhcCCcccc---cc----CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235           58 PSADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~  130 (447)
                      +.+.+++++.+++++....+   .+    ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|+++
T Consensus         5 ~~s~~l~~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~   84 (433)
T PRK00615          5 QEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAER   84 (433)
T ss_pred             HHHHHHHHHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence            56788889888888654322   22    368999999999999999999999999999999999999999999999998


Q ss_pred             cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc---hhhhhccCC
Q 013235          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA---AGTMGATAQ  207 (447)
Q Consensus       131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~---~~~~~~t~~  207 (447)
                      +.+  ..++++...+|+++|.+.+|...++|+|+||||||+|.|||+||.+|||.+||.++++|||++   .+++++++.
T Consensus        85 ~~~--~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~  162 (433)
T PRK00615         85 GTS--YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSET  162 (433)
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCC
Confidence            743  345688899999999999986667999999999999999999999999999999999999998   556666543


Q ss_pred             CCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       208 ~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                      ........ .+ ...+.++....++ +|    .++++++++... +++++||+||+|+++|+++|+++||++|+++|++|
T Consensus       163 ~~~~~~~~-~~-~~~~~~~~~~~~~-~d----~~~l~~~l~~~~-~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~  234 (433)
T PRK00615        163 SLDTLTHL-VD-TDLAHPLTLSLPY-ND----FQIFQTVMNSLG-HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRT  234 (433)
T ss_pred             CcCcCCCC-CC-CCCCCCCeEeCCC-CC----HHHHHHHHHhcC-CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence            21110000 00 0000111111223 33    567888886543 58999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHH
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAG  364 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaa  364 (447)
                      |+++|+||||||| |+| .+|+++++|+.|||+||||++|||+|+|++++++++++.+...   .+.+||++||++|+++
T Consensus       235 g~llI~DEv~tG~-R~G-~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~  312 (433)
T PRK00615        235 GSLSIMDEVVTGF-RVA-QGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAG  312 (433)
T ss_pred             CCEEEEEcccccc-ccc-HhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHH
Confidence            9999999999999 999 6888899999999999999999999999999999999988542   2668999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC-eeeEeecceeEEEEEeeCCCC--C---CCCHHHHHHHHHHHHh
Q 013235          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQL--K---TPAKAETLYIMDKMKG  438 (447)
Q Consensus       365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~vrg~Gl~~giel~~~~~~--~---~p~~~~~~~~~~~l~~  438 (447)
                      +++|++++++++++++++++++|+++|+++..+++. +..+| .|+|++++|.+++.+  +   ..+.+...++.++|++
T Consensus       313 la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  391 (433)
T PRK00615        313 KASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS  391 (433)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999877433 77788 999999999865432  1   1133456789999999


Q ss_pred             CCceeec
Q 013235          439 ICALFFS  445 (447)
Q Consensus       439 ~Gvlv~~  445 (447)
                      +||++.+
T Consensus       392 ~Gv~~~~  398 (433)
T PRK00615        392 KGVYLSP  398 (433)
T ss_pred             CCeeecC
Confidence            9999864

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=1.9e-67  Score=537.36  Aligned_cols=349  Identities=26%  Similarity=0.397  Sum_probs=300.4

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhC--CCC
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKM--PGN  157 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~--~~~  157 (447)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|+++..+... .+.++...+|+++|++.+  |.+
T Consensus        17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~   96 (412)
T TIGR02407        17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRG   96 (412)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccC
Confidence            58999999999999999999999999999999999999999999999997655433 345788899999999985  322


Q ss_pred             Cc-eEEE-cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc--cCCCeEeecCCCCcCCCCC
Q 013235          158 LK-VVFF-TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFG  233 (447)
Q Consensus       158 ~~-~v~~-~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~--~~~g~~~~~~p~~~~~~~~  233 (447)
                      .. +++| +||||||||.|+|+||.+|+|++||+|+++|||++.+++++++...++...  +..++..+|+|+...    
T Consensus        97 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~----  172 (412)
T TIGR02407        97 LDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLG----  172 (412)
T ss_pred             CCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccc----
Confidence            32 4555 699999999999999999999999999999999999999998865444333  224666676664321    


Q ss_pred             CChHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235          234 ADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (447)
Q Consensus       234 ~d~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~  311 (447)
                       +....++.+++++++..  .+++|+||+||+||++|++++|++||++|+++|++||+++|+||||||||||| ++|+++
T Consensus       173 -~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG-~~~a~~  250 (412)
T TIGR02407       173 -GDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-TFFSFE  250 (412)
T ss_pred             -cchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-hhHHhc
Confidence             11123667888886432  25799999999999999999999999999999999999999999999999999 799999


Q ss_pred             ccCCCCCEEEeeccccC-CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHH
Q 013235          312 AHGVVPDIVTMAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-IQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       312 ~~gv~pDivt~sK~lg~-G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~-i~~~~l~~~~~~~g~~l~~  389 (447)
                      ++++.|||+++||+|+| |+|+|++++++++ +.+....+.+||++||++|+++.++|++ ++++++.+++++++++|++
T Consensus       251 ~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~  329 (412)
T TIGR02407       251 PAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQE  329 (412)
T ss_pred             ccCCCCCEEEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999998 9999999999987 6665556889999999999999999995 8888899999999999999


Q ss_pred             HHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          390 RLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       390 ~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +|+++.++++ .+.++||.|+|++++|.+        ...+.++.+.|+++||++.
T Consensus       330 ~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~--------~~~~~~~~~~~~~~Gv~v~  377 (412)
T TIGR02407       330 RLDRIVAEYPELIKQVRGRGLMQGIECGD--------GDLAGKIAKAAFENGLIIE  377 (412)
T ss_pred             HHHHHHhhCCCceEeeecceeEEEEEecC--------hHHHHHHHHHHHHCCCEEe
Confidence            9999999887 688999999999999953        2345679999999999985

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=2.8e-67  Score=538.44  Aligned_cols=350  Identities=28%  Similarity=0.443  Sum_probs=300.4

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhC--CCC
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKM--PGN  157 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~--~~~  157 (447)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+++|+++..+... .+.++...+|+++|++.+  |.+
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~  100 (425)
T PRK09264         21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG  100 (425)
T ss_pred             CCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC
Confidence            58999999999999999999999999999999999999999999999998655444 346788899999999975  333


Q ss_pred             Cc-eEEE-cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc--cCCCeEeecCCCCcCCCCC
Q 013235          158 LK-VVFF-TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFG  233 (447)
Q Consensus       158 ~~-~v~~-~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~--~~~g~~~~~~p~~~~~~~~  233 (447)
                      .+ +++| +||||||||.|||+||.+|+|.+||+++++|||++.+++++++...++..+  +..++.++++|+.++..  
T Consensus       101 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--  178 (425)
T PRK09264        101 LDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGD--  178 (425)
T ss_pred             CCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccc--
Confidence            43 5656 599999999999999999999999999999999999999998866554332  22567778777643211  


Q ss_pred             CChHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235          234 ADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (447)
Q Consensus       234 ~d~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~  311 (447)
                         ...++++++++++..  ++++|+||+||+||++|++++|++||++|+++|++||+++|+|||||||||+| ++|+++
T Consensus       179 ---~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG-~~~~~~  254 (425)
T PRK09264        179 ---VDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG-TFFSFE  254 (425)
T ss_pred             ---hhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc-HHHHHh
Confidence               112567888886532  35799999999999999999999999999999999999999999999999999 789999


Q ss_pred             ccCCCCCEEEeeccccC-CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 013235          312 AHGVVPDIVTMAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL-KVIQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       312 ~~gv~pDivt~sK~lg~-G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L-~~i~~~~l~~~~~~~g~~l~~  389 (447)
                      ++++.|||+|+||++++ |+|+|++++++++. .+....+.+||++||++|++++++| ++++++++.+++++++++|++
T Consensus       255 ~~~v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~  333 (425)
T PRK09264        255 RAGITPDIVTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRE  333 (425)
T ss_pred             hcCCCCCEEEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999998 99999999999984 5554557899999999999999999 667777899999999999999


Q ss_pred             HHHHHHHhcCC-eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          390 RLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       390 ~L~~l~~~~~~-i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +|+++.++++. +.++||.|+|+++++.+        .....++.+.|+++||++.+
T Consensus       334 ~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~--------~~~~~~l~~~~~~~Gv~~~~  382 (425)
T PRK09264        334 RLEEIAAKYPGLGAEVRGRGMMQGIDFGD--------GELAGKIAAEAFENGLIIET  382 (425)
T ss_pred             HHHHHHHhCCCceecceecccEEEEEecC--------hHHHHHHHHHHHHCCCEEec
Confidence            99999888874 58899999999999953        23456789999999999853

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=2e-66  Score=532.60  Aligned_cols=351  Identities=28%  Similarity=0.457  Sum_probs=305.2

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCCc
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      .|+++.+|+|+||||.|||+||||++|++++++||+||+|.+|+++|++++.+... .++++...+|+++|++.+|.+.+
T Consensus        24 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~  103 (423)
T PRK05964         24 PPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLD  103 (423)
T ss_pred             CCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence            58999999999999999999999999999999999999999999999999876544 46788899999999999987788


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGV  231 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~  231 (447)
                      +|+|+||||||||+|+|+||.+      |+|.+||+++++|||++.+++++++...++.....  .++..+++|+.    
T Consensus       104 ~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~----  179 (423)
T PRK05964        104 HVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD----  179 (423)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc----
Confidence            9999999999999999999998      68999999999999999999999876544322211  34555655431    


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~  310 (447)
                        +..+.+++++++++... ++++|+||+|| +|+++|+++++++||++|+++|++||+++|+|||||||||+| .+|++
T Consensus       180 --d~~~~~~~~l~~~l~~~-~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G-~~~a~  255 (423)
T PRK05964        180 --GYEQATLDALEALLEKH-AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG-TLFAC  255 (423)
T ss_pred             --hhHHHHHHHHHHHHHhC-CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc-chhHH
Confidence              11234577788888643 46899999999 799999999999999999999999999999999999999999 78889


Q ss_pred             cccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC------cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013235          311 EAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVV  383 (447)
Q Consensus       311 ~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~------~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~  383 (447)
                      +++++.|||+++||+++|| +|+|++++++++++.+...      .|.+||++||++|++++++|++++++++.++++++
T Consensus       256 ~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~  335 (423)
T PRK05964        256 EQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAAL  335 (423)
T ss_pred             HhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999998 7999999999999987532      36789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++|+++|+++. +++.+.++||.|+|+++++.++..     .....++++.|+++||++..
T Consensus       336 g~~l~~~l~~l~-~~~~i~~vrg~Gl~~~i~l~~~~~-----~~~~~~l~~~l~~~Gv~v~~  391 (423)
T PRK05964        336 SAGLAEGLEPFR-DLPGVADVRVLGAIGAVELDRPVL-----ERDGPALRAFALERGVLLRP  391 (423)
T ss_pred             HHHHHHHHHhhc-cCCCeEEeecccEEEEEEeccCcc-----hhHHHHHHHHHHHCCeEEEe
Confidence            999999999984 577888999999999999965421     12356789999999999864

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=4.2e-66  Score=531.38  Aligned_cols=371  Identities=21%  Similarity=0.258  Sum_probs=303.9

Q ss_pred             CCHHHHHHHHhhhcCCcc-cc---cc--CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc
Q 013235           58 PSADEILAKRKTFLSPSL-FH---LY--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI  131 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~---~~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~  131 (447)
                      ++|.+++++.+++++... .+   .+  ..|+++++|+|+|+||+|||+||||.++++++++||+||+|.+|+++|++++
T Consensus        28 ~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~  107 (453)
T PRK07046         28 PRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRG  107 (453)
T ss_pred             hhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhC
Confidence            567889999998886543 22   12  3589999999999999999999999999999999999999999999999987


Q ss_pred             ccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhcc--CCCC
Q 013235          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGAT--AQSN  209 (447)
Q Consensus       132 ~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t--~~~~  209 (447)
                      .+  ..++++...+|+|+|++..+  .++|+|+||||||++.|+|+||.+|||++||.|+++|||++.+++...  +...
T Consensus       108 ~~--~~~~~~~~~~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~  183 (453)
T PRK07046        108 LT--TMLPSEDAAWVGEELARRFG--LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPV  183 (453)
T ss_pred             CC--CCCCCHHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCC
Confidence            43  34578899999999999984  689999999999999999999999999999999999999988776542  1111


Q ss_pred             ccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      ++...  .++..-..++....+| +|    ++.+++++.   ++++||||+||+|+++|.++|+++||++|+++|++||+
T Consensus       184 ~~~~~--~g~~~~~~~~~~~~~~-nd----~~~l~~~l~---~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~  253 (453)
T PRK07046        184 QRPGL--LGQVHDLTATTRVVEF-ND----LAALEAALA---DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGT  253 (453)
T ss_pred             CCCCC--CCCCccccCceEeeCC-CC----HHHHHHHhC---CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCC
Confidence            11111  1111000111122334 34    577887774   35899999999999999999999999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC-------C--cccccCCCChHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-------R--NYFNTFGGNPVC  360 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~-------~--~~~~T~~~np~a  360 (447)
                      ++|+|||+| | |+| .....+++|++|||+||||+||||+|+|++++++++++.+..       .  .+.+||++||++
T Consensus       254 llI~DEV~t-f-r~g-~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~  330 (453)
T PRK07046        254 LLVIDETHT-I-SSG-PGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALA  330 (453)
T ss_pred             EEEEEcccc-C-ccC-CcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHH
Confidence            999999999 5 354 122346789999999999999999999999999999998752       1  366899999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCC-----C-CCHHHHHHHHH
Q 013235          361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----T-PAKAETLYIMD  434 (447)
Q Consensus       361 ~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~-----~-p~~~~~~~~~~  434 (447)
                      |++++++|++++++++++++++++++|+++|+++.++++++..|+|.|+|+.++|.+++...     . .+......++.
T Consensus       331 ~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (453)
T PRK07046        331 MAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHL  410 (453)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999986542210     1 13345567888


Q ss_pred             HHHhCCceeec
Q 013235          435 KMKGICALFFS  445 (447)
Q Consensus       435 ~l~~~Gvlv~~  445 (447)
                      .|+++||++.+
T Consensus       411 ~~~~~Gv~~~~  421 (453)
T PRK07046        411 YLLNRGVLITP  421 (453)
T ss_pred             HHHHCCCEEec
Confidence            99999999864

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=2.8e-66  Score=557.91  Aligned_cols=386  Identities=19%  Similarity=0.221  Sum_probs=309.6

Q ss_pred             CCHHHHHHHHhhhcCCccccc--c--CCCeEEEeeccc----EEEecCCC----eEEEecCCcccccCC-CCCHHHHHHH
Q 013235           58 PSADEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQ----YLFDENGR----RYLDAFGGIATVCCG-HCHPYVVDSI  124 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~----~l~d~dG~----~ylD~~~g~~~~~lG-h~~p~v~~A~  124 (447)
                      ++.+++.++.+++++..+...  +  ..|.+|++++|.    |++|.+|+    +|||++++++++++| |+||+|++|+
T Consensus       312 ~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai  391 (817)
T PLN02974        312 QRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAV  391 (817)
T ss_pred             HHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHH
Confidence            344666777777876543221  1  247889999998    99999998    999999999999999 6899999999


Q ss_pred             HHHHHhcccccc-cccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHH-hhc------------------C
Q 013235          125 VNQIKRIQHSTV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMAR-LYT------------------G  183 (447)
Q Consensus       125 ~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar-~~t------------------~  183 (447)
                      .+|++++.|... .+.++...+|+|+|.+..+.+ +++|||++|||||||.|||+|| .|+                  +
T Consensus       392 ~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~  471 (817)
T PLN02974        392 AYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLI  471 (817)
T ss_pred             HHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCC
Confidence            999999988765 467899999999999955423 6899999999999999999995 452                  4


Q ss_pred             CCeEEEEcCCcccCchhhhhccCCCCccccc--c--CCCeEeecCC--------------CCcCCC-------CCC----
Q 013235          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNV--V--QTGVHHALNP--------------DPYRGV-------FGA----  234 (447)
Q Consensus       184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~--~--~~g~~~~~~p--------------~~~~~~-------~~~----  234 (447)
                      |.+||+++++|||.|.+++++++.+.+...+  +  .+...+++.|              ..++..       |.+    
T Consensus       472 r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  551 (817)
T PLN02974        472 ELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEV  551 (817)
T ss_pred             CCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccccccccccccc
Confidence            7789999999999999999999754433211  1  1122222222              222111       100    


Q ss_pred             -----C----hHHHHHHHHHHHHc----cCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc
Q 013235          235 -----D----GEMYAKDVQDLIDF----GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF  300 (447)
Q Consensus       235 -----d----~~~~~~~le~~i~~----~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf  300 (447)
                           +    .+.+.+.+++.|+.    ..++++||||+||+ ||.||++++|++|+++|+++|++||++||+|||+|||
T Consensus       552 f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGf  631 (817)
T PLN02974        552 FDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGL  631 (817)
T ss_pred             ccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCC
Confidence                 0    12345677777763    34578999999995 9999999999999999999999999999999999999


Q ss_pred             cccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC------CcccccCCCChHHHHHHHHHHHHHhh
Q 013235          301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR------RNYFNTFGGNPVCTAAGHAVLKVIQK  373 (447)
Q Consensus       301 gr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~------~~~~~T~~~np~a~aaala~L~~i~~  373 (447)
                      |||| ++|+++++|++|||+|+||+|+|| +|+|++++++++++.+..      ..|++||+|||++||+|+++|+++++
T Consensus       632 GRtG-~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~  710 (817)
T PLN02974        632 WRLG-VESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD  710 (817)
T ss_pred             Cccc-chhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence            9999 799999999999999999999999 599999999999998853      13789999999999999999999998


Q ss_pred             hh----HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC-HHHHHHHHHHHH-hCCceeec
Q 013235          374 DK----LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       374 ~~----l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~-~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ++    +.++.++++++|++.|.+...+++.+++|||.|+|++|||++++.+ .|. ...+.++.+.|+ ++||++++
T Consensus       711 ~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~-~~~~~~~a~~v~~~~~~~~Gl~~r~  787 (817)
T PLN02974        711 PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSG-SGYSSLYARSVVRRLRREDGIYARP  787 (817)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcc-cccchHHHHHHHHHHHHhCCEEEEe
Confidence            74    5555666667777777444467899999999999999999876543 232 234677889999 99999874

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=4.7e-66  Score=530.46  Aligned_cols=349  Identities=27%  Similarity=0.391  Sum_probs=287.9

Q ss_pred             CeEEEeecccEEEec-CCCeEEEecCCcccccCCCCCHHHHH--HHHHHHHhccc--ccc-cccchHHHHHHHHHHHhC-
Q 013235           82 PLNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVD--SIVNQIKRIQH--STV-LYLNHAIADFAEALASKM-  154 (447)
Q Consensus        82 p~~~~~g~G~~l~d~-dG~~ylD~~~g~~~~~lGh~~p~v~~--A~~~~l~~~~~--~~~-~~~~~~~~elae~L~~~~-  154 (447)
                      ++.+.+++|+||||. |||+||||.+|++++++||+||+|++  |+++|++++.+  .+. .+.++...+|+++|++.. 
T Consensus        27 ~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~  106 (443)
T PRK08297         27 VLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG  106 (443)
T ss_pred             ceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC
Confidence            455899999999996 99999999999999999999999999  99999998653  222 467889999999999987 


Q ss_pred             CCCCceEEEcCCHHHHHHHHHHHHHhhc------------CCCeEEEEcCCcccCchhhhhccCCCCcccc-ccCCCeEe
Q 013235          155 PGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWKFN-VVQTGVHH  221 (447)
Q Consensus       155 ~~~~~~v~~~~sGseA~e~Aik~ar~~t------------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~-~~~~g~~~  221 (447)
                      |.+.++|+|+||||||||.|||+||.|+            +|.+||+++++|||++.+++++++...++.. .+..+..+
T Consensus       107 p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~  186 (443)
T PRK08297        107 DPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPR  186 (443)
T ss_pred             CCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccc
Confidence            6667899999999999999999999883            2578999999999999999999875332211 12112222


Q ss_pred             ecCCCCcCCCCC-C---Ch----HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          222 ALNPDPYRGVFG-A---DG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       222 ~~~p~~~~~~~~-~---d~----~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                      ++.|..+ .++. .   +.    ..+++++++++... ++++|+||+||+||++|+++||++||++|+++|++||+++|+
T Consensus       187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~  264 (443)
T PRK08297        187 IDNPKLR-FPLPGEDLEEVEALEAEALAQARAAFERH-PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIF  264 (443)
T ss_pred             cCCCCCC-CCCcccccchhhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            3323221 1110 0   11    12356677778753 579999999999999999999999999999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhh----c-CCcccccCCCChHHHHHHHHHH
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL----T-RRNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l----~-~~~~~~T~~~np~a~aaala~L  368 (447)
                      |||||||||+| ++|+++++|+.|||+||||++    |+|++++.+++.+..    . ...|++||++||++|++++++|
T Consensus       265 DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gK~l----~~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L  339 (443)
T PRK08297        265 DEVQTGVGLTG-TAWAYQQLGVRPDIVAFGKKT----QVCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRIL  339 (443)
T ss_pred             echhhccCccc-hHHHHHhcCCCCCEEEecccc----cccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHH
Confidence            99999999999 799999999999999999987    456777777655432    1 2247899999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++++++.+++++++++|+++|+++.++++.+. +|||.|+|++++|.+        ......+++.|+++||++.+
T Consensus       340 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~--------~~~~~~~~~~l~~~Gvl~~~  409 (443)
T PRK08297        340 EVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT--------TADRDEVIRRLWEEGVLVLP  409 (443)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC--------HHHHHHHHHHHHHCCEEEec
Confidence            9999999999999999999999999999998765 999999999999943        12456789999999999854

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=6.4e-66  Score=521.44  Aligned_cols=332  Identities=33%  Similarity=0.529  Sum_probs=296.0

Q ss_pred             EEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEc
Q 013235           85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT  164 (447)
Q Consensus        85 ~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~  164 (447)
                      +++++|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+.+..+.++...+|+++|++..+  .++|+|+
T Consensus         1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~f~   78 (382)
T PLN00144          1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSF--ADRVFFC   78 (382)
T ss_pred             CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCC--CCeEEEe
Confidence            46899999999999999999999999999999999999999999998776665668889999999999874  5689999


Q ss_pred             CCHHHHHHHHHHHHHhhcC-------------CCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcC
Q 013235          165 NSGTEANELAIMMARLYTG-------------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYR  229 (447)
Q Consensus       165 ~sGseA~e~Aik~ar~~t~-------------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~  229 (447)
                      ||||||||.|+|+||.+++             +.+||+++++|||++.+++++++...++..+.  .+++.+++++    
T Consensus        79 ~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----  154 (382)
T PLN00144         79 NSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG----  154 (382)
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC----
Confidence            9999999999999999975             47899999999999999999988655543322  1455555432    


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       230 ~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                           |    .+.+++++.   ++++++||+||+||+||+.+++++|+++|+++|++||+++|+|||||||||+| .+|+
T Consensus       155 -----d----~~~l~~~~~---~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g-~~~~  221 (382)
T PLN00144        155 -----N----LEAARKLIQ---KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWA  221 (382)
T ss_pred             -----C----HHHHHHhcC---CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-hHhh
Confidence                 3    567777764   35899999999999999999999999999999999999999999999999999 6888


Q ss_pred             ccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235          310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       310 ~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~  389 (447)
                      ++++++.|||+||||+|++|+|+|++++++++++.+....+.+||++||++|++++++|++|+++++.+++++++++|++
T Consensus       222 ~~~~~~~PDi~t~sK~l~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~  301 (382)
T PLN00144        222 HEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRE  301 (382)
T ss_pred             hhhcCCCCCEEEecccccCCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999877678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|+++.++++.+.+|||.|+|++++|..      +    ..++++.|+++||++.+
T Consensus       302 ~l~~~~~~~~~~~~vrg~G~~~~l~l~~------~----~~~~~~~~~~~Gv~i~~  347 (382)
T PLN00144        302 LLRRKLGGNPHVKEVRGVGLLVGIQLDV------P----AGPLVDACRDSGLLVLT  347 (382)
T ss_pred             HHHHHHhhCCCceeeecCceEEEEEecC------c----cHHHHHHHHHCCeEEee
Confidence            9999998998899999999999999921      1    35688999999999864

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=2.1e-65  Score=521.02  Aligned_cols=339  Identities=30%  Similarity=0.533  Sum_probs=300.8

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      ..|+++++|+|+|+||.|||+||||.+|+++.+|||+||+|.+|+.+|++++.+....+.++...+|+++|++..+  .+
T Consensus        16 ~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~--~~   93 (397)
T TIGR03246        16 PAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATF--AD   93 (397)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC--CC
Confidence            4589999999999999999999999999999999999999999999999987655555678889999999999884  46


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGV  231 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~  231 (447)
                      +++|+|||+||||.|||+||.++      +|.+||+++++|||++.+++++++...++..+.  ..++..++++      
T Consensus        94 ~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  167 (397)
T TIGR03246        94 KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN------  167 (397)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC------
Confidence            89999999999999999999985      788999999999999999999887654443222  2455555443      


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~  311 (447)
                         |    .+++++++.    +++++||+||+|+++|+++++++||++|+++|++||+++|+|||||||||+| .+|+++
T Consensus       168 ---d----~~~l~~~l~----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G-~~~a~~  235 (397)
T TIGR03246       168 ---D----LAAAKALIS----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM  235 (397)
T ss_pred             ---C----HHHHHHHhc----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc-cchhhh
Confidence               3    567777774    3799999999999999999999999999999999999999999999999999 688889


Q ss_pred             ccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       312 ~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L  391 (447)
                      ++|+.||++|+||+++||+|+|++++++++++.+....+.+||++||++|++++++|++++++++.+++++++++|+++|
T Consensus       236 ~~gv~pDi~t~~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L  315 (397)
T TIGR03246       236 HYGVTPDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL  315 (397)
T ss_pred             hcCCCCCEEEeehhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987666889999999999999999999988899999999999999999


Q ss_pred             HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++..+++.+.++||.|+|+++++.++.      ......+++.|+++||++.
T Consensus       316 ~~l~~~~~~~~~vrg~G~~~~i~~~~~~------~~~~~~~~~~l~~~Gv~~~  362 (397)
T TIGR03246       316 EKINARYNVFSEIRGKGLLIGAVLTEAY------QGKAKQFVNAAAEEGVIAL  362 (397)
T ss_pred             HHHHhcCCCeEeeecCceEEEEEEcCch------hhHHHHHHHHHHHCCeEEe
Confidence            9998888889999999999999996421      1245689999999999985

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=1.1e-65  Score=521.39  Aligned_cols=334  Identities=33%  Similarity=0.582  Sum_probs=288.2

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      ..|+++++++|+|+||.|||+||||++|+++.++||+||+|.+|+.+|++++.+.+..+.++...+|+++|.+..  +.+
T Consensus        17 ~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~   94 (395)
T PRK03715         17 RPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHS--CFD   94 (395)
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhcc--CCC
Confidence            457899999999999999999999999999999999999999999999999877665566888899999999864  357


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVF  232 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~~  232 (447)
                      +++|+|||+||||.|+|+||.++     ++++||+++++|||++.+++++++...|+....+  .++.+.++        
T Consensus        95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~--------  166 (395)
T PRK03715         95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAEL--------  166 (395)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCC--------
Confidence            89999999999999999999874     6789999999999999999999876544432211  23333321        


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~  312 (447)
                       +|    ++++++.+.    +++++||+||+|+++|++++|++||++|+++|++||+++|+|||||||||+| ++|++++
T Consensus       167 -~d----~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG-~~~a~~~  236 (395)
T PRK03715        167 -ND----IASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG-TLFAYEL  236 (395)
T ss_pred             -ch----HHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc-chhhHhh
Confidence             23    566777664    3789999999999999999999999999999999999999999999999999 7999999


Q ss_pred             cCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013235          313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       313 ~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~  392 (447)
                      +|+.|||+||||+|+||+|+|+++++++++. +....+++||++||++|++++++|++++++++.+++++++++|+++|+
T Consensus       237 ~gv~PDi~t~gK~lg~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~  315 (395)
T PRK03715        237 SGIEPDIMTLGKGIGGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLL  315 (395)
T ss_pred             cCCCCceeeehhhhhCCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999874 334457899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC---Cceee
Q 013235          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI---CALFF  444 (447)
Q Consensus       393 ~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~---Gvlv~  444 (447)
                      ++.++++ +.+|||.|+|++|++.++         ...++.+.++++   ||++.
T Consensus       316 ~l~~~~~-i~~vrG~Glm~~i~l~~~---------~~~~~~~~~~~~~~~Gi~~~  360 (395)
T PRK03715        316 ELSEERG-LEGERGEGLLRALLLGKD---------IGPQIVEKARDMQPDGLLLN  360 (395)
T ss_pred             HHhhcCC-cCeEEcceeEEEEEecCc---------hHHHHHHHHHhccCCCEEEe
Confidence            9988887 678999999999999642         123444555555   99985

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=1.3e-64  Score=519.13  Aligned_cols=366  Identities=25%  Similarity=0.369  Sum_probs=294.6

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeecccEEEec-CCCeEEEecCCcccccCCCCCHHHH--HHHHHHHHhccc---cc
Q 013235           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVV--DSIVNQIKRIQH---ST  135 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~-dG~~ylD~~~g~~~~~lGh~~p~v~--~A~~~~l~~~~~---~~  135 (447)
                      .+++...+|....   .|..++.+++++|+||||. |||+||||.+|++++++||+||+|+  +|+.+|++++.+   ..
T Consensus         3 ~~~~~~~~~~~~~---~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~   79 (431)
T TIGR03251         3 RVHEVLSRHMLTD---GFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSN   79 (431)
T ss_pred             hHHHHHHHHhhcc---CCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhccccc
Confidence            4555556664332   2323344699999999996 9999999999999999999999999  999999998743   22


Q ss_pred             ccccchHHHHHHHHHHHhC-CCCCceEEEcCCHHHHHHHHHHHHHhhcC------------CCeEEEEcCCcccCchhhh
Q 013235          136 VLYLNHAIADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTG------------CNDIISLRNAYHGNAAGTM  202 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~-~~~~~~v~~~~sGseA~e~Aik~ar~~t~------------~~~ii~~~~~yHG~~~~~~  202 (447)
                      ..+.++...+++++|++.. +.++++|+|+||||||||+|||+||.|++            |++||+|+++|||++.+++
T Consensus        80 ~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~al  159 (431)
T TIGR03251        80 SDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTL  159 (431)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhh
Confidence            2456888899999999986 55678999999999999999999999863            4789999999999999999


Q ss_pred             hccCCCCccccc-cCCCeEeecCCCCcCCCCC----CCh----HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          203 GATAQSNWKFNV-VQTGVHHALNPDPYRGVFG----ADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       203 ~~t~~~~~~~~~-~~~g~~~~~~p~~~~~~~~----~d~----~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      ++++...++... +..+..+++.|+. +.++.    .+.    ..+++++++.++.. ++++||||+||+||++|++++|
T Consensus       160 s~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~iAavivEPv~g~~G~~~~~  237 (431)
T TIGR03251       160 SLTNTDPRKTARFPKFDWPRIDNPKL-TFPLDAPNLDQVIALEEEALRQARAAFAER-PHDIACFIAEPIQGEGGDNHFR  237 (431)
T ss_pred             hccCCccccccCCCCCCCccCCCCcc-cCCccccccchhhHHHHHHHHHHHHHHHhC-CCcEEEEEEeccccCCCCcCCC
Confidence            998854333221 1112222333322 11111    111    13456677777643 5799999999999999999999


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhh----c-CC
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL----T-RR  348 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l----~-~~  348 (447)
                      ++||++|+++|++||++||+|||||||||+| .+|+++++|+.|||+|+||++    |+++++..+++.+..    . ..
T Consensus       238 ~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG-~~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~  312 (431)
T TIGR03251       238 PEFLRAMRALCDEHDALLIFDEVQTGVGLTG-TAWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPS  312 (431)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecchhccCccc-hHHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCcc
Confidence            9999999999999999999999999999999 799999999999999999986    666677666543322    1 12


Q ss_pred             cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHH
Q 013235          349 NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKA  427 (447)
Q Consensus       349 ~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~  427 (447)
                      .+.+||++||++|++++++|++++++++.+++++++++|+++|+++.++++ .+.++||.|+|+++++.+        ..
T Consensus       313 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~--------~~  384 (431)
T TIGR03251       313 RLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS--------TA  384 (431)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC--------HH
Confidence            477999999999999999999999999999999999999999999988898 899999999999999942        22


Q ss_pred             HHHHHHHHHHhCCceeec
Q 013235          428 ETLYIMDKMKGICALFFS  445 (447)
Q Consensus       428 ~~~~~~~~l~~~Gvlv~~  445 (447)
                      ...++.+.|+++||++.+
T Consensus       385 ~~~~~~~~l~~~Gvl~~~  402 (431)
T TIGR03251       385 DRDEVIRQLYREGVLLLG  402 (431)
T ss_pred             HHHHHHHHHHhCCeEEec
Confidence            456789999999999853

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=1.1e-63  Score=509.95  Aligned_cols=339  Identities=31%  Similarity=0.545  Sum_probs=299.2

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      ..|+++++++|+||||.|||+||||.+|+++++|||+||+|++|+.+|++++.+....+.++...+|+++|++..+  .+
T Consensus        20 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   97 (406)
T PRK12381         20 PAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--AD   97 (406)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC--CC
Confidence            4578999999999999999999999999999999999999999999999987665555678888999999999874  47


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGV  231 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~  231 (447)
                      +|+|++||+||||.|+|+||.++      ++.+|++++++|||++.+++++++.+.++..+..  .++.+++.       
T Consensus        98 ~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  170 (406)
T PRK12381         98 RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-------  170 (406)
T ss_pred             eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-------
Confidence            89999999999999999999985      7889999999999999999999886655433211  23333332       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~  311 (447)
                        +|    ++++++++.    +++++||+||+|++||+++++++|+++|+++|++||+++|+||||+||||+| .+|+++
T Consensus       171 --~d----~~~l~~~l~----~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G-~~~~~~  239 (406)
T PRK12381        171 --ND----LNSASALID----DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM  239 (406)
T ss_pred             --CC----HHHHHHhcc----CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc-chhhhH
Confidence              23    567777764    3799999999999999999999999999999999999999999999999999 688888


Q ss_pred             ccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       312 ~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L  391 (447)
                      ++++.||++||||+++||+|+|++++++++++.+....+.+||++||+++++++++|++++++++.+++++++++|+++|
T Consensus       240 ~~~v~pDi~t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  319 (406)
T PRK12381        240 HYGVTPDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL  319 (406)
T ss_pred             hhCCCCCEEEehhhhhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987767889999999999999999999998899999999999999999


Q ss_pred             HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++..+++.+.++||.|+|+++++.++.      ...+..+.+.|+++||++.
T Consensus       320 ~~l~~~~~~~~~vrg~Gl~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~  366 (406)
T PRK12381        320 NTINARYGLFSEIRGLGLLIGCVLNAEY------AGKAKQISQEAAKAGVMVL  366 (406)
T ss_pred             HHHHhhCCCEEEEecCeEEEEEEecCch------hhHHHHHHHHHHHCCcEEe
Confidence            9998888888999999999999996421      1235678899999999985

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=5.4e-63  Score=512.26  Aligned_cols=363  Identities=28%  Similarity=0.459  Sum_probs=313.1

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~  138 (447)
                      .++++++..+++..+.   +++.|+++++++|+||||.||++||||++|++++++||+||+|++|+++|++++.+.+..+
T Consensus        38 ~~~~~~~~~~~~~~~~---~~~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~  114 (474)
T PLN02624         38 SSAHLIELEEKYSAHN---YHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAF  114 (474)
T ss_pred             chHHHHHHHHHhhccc---cCCCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence            3467788777775553   4466899999999999999999999999999999999999999999999999987766667


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc--------CCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t--------~~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      .++...+|+++|++.++  .++++|+|||+||||.|||+||.++        ++.+||.+.++|||++.+++++++...+
T Consensus       115 ~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~  192 (474)
T PLN02624        115 YNDKFPEFAEYLTSMFG--YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEA  192 (474)
T ss_pred             CCHHHHHHHHHHHhhcC--CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccc
Confidence            78999999999999984  5789999999999999999999863        3457999999999999999999876544


Q ss_pred             ccccc--CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          211 KFNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       211 ~~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      +..+.  .+++.++++         +|    .+.++++++.. ++++++||+||+|+++|.+.++++||++|+++|++||
T Consensus       193 ~~~~~~~~~~~~~~~~---------~d----~~~l~~~l~~~-~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g  258 (474)
T PLN02624        193 TRGFGPLLPGHLKVDF---------GD----LDALEKIFEED-GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN  258 (474)
T ss_pred             cccCCCCCCCceEeCC---------CC----HHHHHHHHHhC-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            43321  134444433         23    56778878643 4689999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~  367 (447)
                      +++|+||||+||||+| ++|+++++++.||+++|||++++| +|+|++++++++++.+....+++||++||++++++.++
T Consensus       259 illI~DEv~tG~GrtG-~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aa  337 (474)
T PLN02624        259 VLMIADEIQTGLARTG-KMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAA  337 (474)
T ss_pred             CEEEEeccccCcCcCc-chhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHH
Confidence            9999999999999999 688888899999999999999987 79999999999998887667889999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |+.++++++.+++.+++++|+++|.++.++++ .+.+++|.|+|++|++.++.    +....+.++++.|+++||++.+
T Consensus       338 Le~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~----~~~~~a~~~~~~L~e~GV~v~p  412 (474)
T PLN02624        338 LQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPK----LGPVSAYDVCLKLKERGLLAKP  412 (474)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCC----cChHHHHHHHHHHHhCCeEEec
Confidence            99999889999999999999999999988887 57889999999999995331    1123456789999999999864

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=2.2e-63  Score=509.09  Aligned_cols=373  Identities=26%  Similarity=0.370  Sum_probs=308.0

Q ss_pred             CHHHHHHHHhhhcCCccccc-cC-CCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           59 SADEILAKRKTFLSPSLFHL-YS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~-~~-~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      +.+++++...+++++..... .. .++.+++++|+|+||.|||+||||++|+++++|||+||+|++|+.+|++++.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~   82 (427)
T TIGR00508         3 DTASLLAFDQRHIWHPYTSMSSPLPVYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMF   82 (427)
T ss_pred             ChHHHHhccccccccCccCccccCCCceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            34456665555544322111 12 24678999999999999999999999999999999999999999999999865443


Q ss_pred             -cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       137 -~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                       .+.++...+++++|++.+|.++++|+|++||+||||.|+|+||.++      +|.+||+|.++|||.+.+++++++...
T Consensus        83 ~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~  162 (427)
T TIGR00508        83 GGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPEN  162 (427)
T ss_pred             cccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcc
Confidence             3568889999999999998878899999999999999999999885      578999999999999999999887432


Q ss_pred             -ccccc--cCCCeEeecCCCC-cCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHH
Q 013235          210 -WKFNV--VQTGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSI  284 (447)
Q Consensus       210 -~~~~~--~~~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~  284 (447)
                       ++...  ..+++..++.|.. +...|.   ...+++++++++.. ++++|+||+||+ |+.||+++++++||++|+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~l~~~l~~~-~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc  238 (427)
T TIGR00508       163 SMHSLYKGYLPEQIFAPAPQNRFDEEWN---EEAITPLAKLMELH-SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALC  238 (427)
T ss_pred             cccccccccCCCCeEcCCCCccccchhH---HHHHHHHHHHHHhc-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHH
Confidence             22111  1134455555532 111121   12356777777643 458999999997 999999999999999999999


Q ss_pred             HHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcCC-----cccccCCCCh
Q 013235          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR-----NYFNTFGGNP  358 (447)
Q Consensus       285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~~-----~~~~T~~~np  358 (447)
                      ++||+++|+|||||||||+| ++|+++++++.|||+|+||+++||+ |++++++++++++.+...     .+.+||++||
T Consensus       239 ~~~~~llI~DEv~tG~Gr~G-~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p  317 (427)
T TIGR00508       239 KQYDILLIADEIATGFGRTG-KLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNP  317 (427)
T ss_pred             HHcCCEEEEeccccCCCcCC-ccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCH
Confidence            99999999999999999999 7899999999999999999999995 999999999999988642     2678999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh
Q 013235          359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG  438 (447)
Q Consensus       359 ~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~  438 (447)
                      ++|++++++|++++++++.+++++++++|+++|+++. +++.+.++||.|+|++|++.++.        .+..+.+.|++
T Consensus       318 ~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~~  388 (427)
T TIGR00508       318 LACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLR-KNPVVKDVRVLGAIGVVEMYKPV--------NVEELQKKFVE  388 (427)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-cCCCEEeEeccccEEEEEECCcc--------CHHHHHHHHHH
Confidence            9999999999999999999999999999999999985 46678899999999999996431        13578899999


Q ss_pred             CCceeec
Q 013235          439 ICALFFS  445 (447)
Q Consensus       439 ~Gvlv~~  445 (447)
                      +||++..
T Consensus       389 ~Gv~~~~  395 (427)
T TIGR00508       389 QGVWIRP  395 (427)
T ss_pred             CCeEEEe
Confidence            9999863

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=4.2e-62  Score=500.59  Aligned_cols=377  Identities=26%  Similarity=0.400  Sum_probs=312.8

Q ss_pred             CCHHHHHHHHhhhcCCcccc-------ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235           58 PSADEILAKRKTFLSPSLFH-------LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~  130 (447)
                      +++++++++.++++.....+       +...|+.+++++|+|+||.||++||||.+|+++.++||+||+|++|+.+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~   81 (426)
T PRK00062          2 SKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK   81 (426)
T ss_pred             chhHHHHHHHHHhCCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh
Confidence            56889999998888654321       12347899999999999999999999999999999999999999999999988


Q ss_pred             cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      ..  ...+.++...+|+++|++.+|. .++|+|+|||+||||.|+|+||.++++++||+++++|||++.++.+.++....
T Consensus        82 ~~--~~~~~~~~~~~la~~L~~~~~~-~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~  158 (426)
T PRK00062         82 GL--SFGAPTELEVELAELVIELVPS-IEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAA  158 (426)
T ss_pred             CC--cCCCCCHHHHHHHHHHHHhCCC-CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCcccc
Confidence            53  2345688889999999999874 67899999999999999999999999999999999999999888777543221


Q ss_pred             cccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      .+..+. .++.....+..++.++ +|    .+++++.++.. ++++++||+||+|+++|.++++++||++|+++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~-~d----~~~l~~~i~~~-~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~  232 (426)
T PRK00062        159 TLGLPDSPGVPEDFAKHTLTAPY-ND----LEAVEELFEEY-GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGA  232 (426)
T ss_pred             ccCCCCCCCCCcccccceEEcCC-CC----HHHHHHHHHhC-CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            111111 1111000011222233 23    56777777643 45899999999999999999999999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---CcccccCCCChHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGHA  366 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~~~~~T~~~np~a~aaala  366 (447)
                      ++|+||||+|| |+| .+|+++++++.||++++||++++|+|+|++++++++++.+..   ..+++||++||++|+++++
T Consensus       233 llI~DEv~~G~-r~g-~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a  310 (426)
T PRK00062        233 LLIFDEVMTGF-RVA-LGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLA  310 (426)
T ss_pred             EEEEeechhcc-ccC-CccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHH
Confidence            99999999999 888 577788899999999999999999999999999999998853   2356899999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCCc
Q 013235          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +|++++++++.+++++++++++++|+++.++++.+.++||.|+|+++++.+++..     +.++...+.++.+.|+++||
T Consensus       311 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv  390 (426)
T PRK00062        311 TLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGV  390 (426)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCe
Confidence            9999998899999999999999999999999999999999999999999764321     23444556789999999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      ++.+
T Consensus       391 ~v~~  394 (426)
T PRK00062        391 YLAP  394 (426)
T ss_pred             Eeec
Confidence            9864

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=6.1e-62  Score=500.09  Aligned_cols=375  Identities=26%  Similarity=0.396  Sum_probs=309.9

Q ss_pred             HHHHHHHHhhhcCCcccc---cc----CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           60 ADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      |++++++.+++++.....   +.    +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.
T Consensus         2 s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~   81 (423)
T TIGR00713         2 SENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT   81 (423)
T ss_pred             cHHHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC
Confidence            567888888887654311   11    45899999999999999999999999999999999999999999999999864


Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~  212 (447)
                      +  ..++++...+|+++|++.+|. .++|+|++|||||+++|+|+||.++++++||+++++|||++..+++.++......
T Consensus        82 ~--~~~~~~~~~~lae~l~~~~~~-~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~  158 (423)
T TIGR00713        82 S--YGAPTEAEILLAKEIISRVPS-VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATL  158 (423)
T ss_pred             c--CCCCCHHHHHHHHHHHHhCCc-ccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCccccc
Confidence            3  234678889999999999875 3689999999999999999999999999999999999999988877654321111


Q ss_pred             cccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE
Q 013235          213 NVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (447)
Q Consensus       213 ~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll  291 (447)
                      ..+. .++.....++.++.++ +|    .+++++++... ++++++||+||+++++|.++++++|+++|+++|++||+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~-~d----~~~l~~~i~~~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~ll  232 (423)
T TIGR00713       159 GLPTSPGVPEDFAKLTLVLPY-ND----LEALEEVFEEY-GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLL  232 (423)
T ss_pred             CCCCCCCCCcccccceEEeCC-CC----HHHHHHHHHHc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEE
Confidence            1111 1111111222233333 23    57788887643 3589999999999999999888999999999999999999


Q ss_pred             EEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHHHHHH
Q 013235          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       292 I~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaala~L  368 (447)
                      |+||||+|| |+| .+|+++++++.||++||||++++|+|+|++++++++++.+...   .+.+||++||++|++++++|
T Consensus       233 I~DEv~~g~-r~g-~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l  310 (423)
T TIGR00713       233 IFDEVMTGF-RVA-LGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATL  310 (423)
T ss_pred             EEEcccccc-ccC-cchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHH
Confidence            999999999 888 5777788999999999999999999999999999999988642   36789999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCCcee
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      +.++++++.++++++++++++.|.++.++++.+.++||.|+|+++++..++.+     +.++...+.++++.|+++||++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  390 (423)
T TIGR00713       311 KLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFL  390 (423)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEE
Confidence            99998889999999999999999999999999999999999999999754321     1233345667899999999998


Q ss_pred             ec
Q 013235          444 FS  445 (447)
Q Consensus       444 ~~  445 (447)
                      ..
T Consensus       391 ~~  392 (423)
T TIGR00713       391 PP  392 (423)
T ss_pred             ec
Confidence            63

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=8.7e-61  Score=491.15  Aligned_cols=378  Identities=29%  Similarity=0.491  Sum_probs=322.8

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc-cc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL-YL  139 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~~  139 (447)
                      +++.++.+++..+....  ..|+++++++|+||||+||++||||.+|++++++||+||+|.+|+.+|++++.|.... +.
T Consensus         5 ~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~   82 (425)
T PRK08088          5 KSLMQRRSAAVPRGVGQ--IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA   82 (425)
T ss_pred             HHHHHHHHHhhccccCC--CCCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccC
Confidence            45566665665444322  3489999999999999999999999999999999999999999999999998665432 34


Q ss_pred             chHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Cccccc--c
Q 013235          140 NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNV--V  215 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~--~  215 (447)
                      ++...+|+++|++..|.+. ++++|++||+||||.|+|+||.++++.+||+++++|||++.+++++++.. .+...+  .
T Consensus        83 ~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~  162 (425)
T PRK08088         83 YEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLM  162 (425)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCC
Confidence            7788899999999887554 58999999999999999999999999999999999999999999988642 233222  1


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                      ..++.+++.|..+++   .+.+..+++++++++. ..++++++||+||+|+++|.+.++++|+++|+++|++||+++|+|
T Consensus       163 ~~~~~~~~~p~~~~~---~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~D  239 (425)
T PRK08088        163 PGHVYRALYPCPLHG---VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIAD  239 (425)
T ss_pred             CCCcEEcCCCccccC---ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            245666666654432   2233446778888863 235689999999999999999999999999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~  374 (447)
                      |||+||||+| .+++++++++.|||++|||++++|+|+|++++++++++.+....+.+||++||+.++++.++|+.++.+
T Consensus       240 ev~~g~g~~g-~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~  318 (425)
T PRK08088        240 EVQTGAGRTG-TLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQE  318 (425)
T ss_pred             ccccCCCcCc-chhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            9999999999 688888899999999999999999999999999999999887778899999999999999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       375 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++.+++++.++++++.|.++.++++.+..++|.|+|++++|.++..++.|......++.+.|+++||++.
T Consensus       319 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~  388 (425)
T PRK08088        319 NLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILL  388 (425)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEe
Confidence            9999999999999999999999998889999999999999976655555666667889999999998874

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=2.2e-61  Score=491.71  Aligned_cols=351  Identities=27%  Similarity=0.465  Sum_probs=302.7

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~  138 (447)
                      ++++++++..++..+.   +...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~---~~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~   79 (396)
T PRK04073          3 KSEKIIELTNHYGAHN---YHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAF   79 (396)
T ss_pred             hHHHHHHHHHHhcccc---cCCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccccc
Confidence            4567777777775553   3356899999999999999999999999999999999999999999999999987765556


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      .++...+|+++|++..+  .++++|+|||+|||++|||+||.+        ++|++||+++++|||++.+++++++.+.+
T Consensus        80 ~~~~~~~l~~~l~~~~~--~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~  157 (396)
T PRK04073         80 HSDQLGPWYEKVAKLTG--KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEY  157 (396)
T ss_pred             CCHHHHHHHHHHHhcCC--CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccc
Confidence            78888999999999875  468999999999999999999987        57889999999999999999999876544


Q ss_pred             ccccc--CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          211 KFNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       211 ~~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      +....  ..++.+++++         |    .+++++.+.    +++++||+||+++++|.+.++++||++|+++|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~---------d----~~~l~~~i~----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g  220 (396)
T PRK04073        158 KRGFGPMLPGIKKIPYG---------D----LEALKAAIT----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEEN  220 (396)
T ss_pred             ccCCCCCCCCceEeCCC---------C----HHHHHHhcc----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence            43221  1344444432         3    466776664    368999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~  367 (447)
                      +++|+||||+||||+| .+|+++++++.||+++|||++|+| +|+|++++++++++.+....+.+||++||+++++++++
T Consensus       221 ~lli~DEv~~g~g~~g-~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aa  299 (396)
T PRK04073        221 VLFIADEIQTGLGRTG-KLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAA  299 (396)
T ss_pred             CEEEEecchhCCCcCc-HHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999 678888899999999999999976 99999999999999887666789999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      |+.++++++.+++++++++|.++|+++  .++.+.+++|.|+|+++++..          ...++.+.|+++||++.
T Consensus       300 L~~~~~~~l~~~~~~~~~~l~~~L~~l--~~~~i~~~~~~g~~~~~~~~~----------~~~~~~~~l~~~Gv~~~  364 (396)
T PRK04073        300 LEVLEEEKLPERSLELGEYFKEQLKEI--DNPMIKEVRGRGLFIGVELNE----------PARPYCEALKEEGLLCK  364 (396)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhh--cCCcccceecceEEEEEEecc----------hHHHHHHHHHHCCeEEe
Confidence            999988899999999999999999987  445678899999999999842          13578899999999985

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=4.2e-60  Score=481.43  Aligned_cols=336  Identities=36%  Similarity=0.549  Sum_probs=295.8

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      ..|+.+++++|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.++...+++++|++..+  .+
T Consensus        12 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   89 (389)
T PRK01278         12 RADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSF--AD   89 (389)
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCC--CC
Confidence            4589999999999999999999999999999999999999999999999987666555678889999999999874  46


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGV  231 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~  231 (447)
                      +|+|++||+|||+.|+|++|.+      ++|++||+++++|||++.+++++++...+.....  ..++..++.+      
T Consensus        90 ~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  163 (389)
T PRK01278         90 KVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFG------  163 (389)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCC------
Confidence            8999999999999999999987      6678999999999999999999887654332211  1234333322      


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~  311 (447)
                         |    .+++++.+.    +++++||+||+|+++|.++++++|+++|+++|++||+++|+||||+||||+| .+++++
T Consensus       164 ---d----~~~l~~~l~----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~~~~~~  231 (389)
T PRK01278        164 ---D----IEALKAAIT----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTG-KLFAHE  231 (389)
T ss_pred             ---C----HHHHHHhhC----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-cceeec
Confidence               3    567777774    2799999999999999889999999999999999999999999999999999 688888


Q ss_pred             ccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       312 ~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L  391 (447)
                      ++++.||+++|||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++++++|
T Consensus       232 ~~~~~pdi~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l  311 (389)
T PRK01278        232 WAGVTPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL  311 (389)
T ss_pred             ccCCCCCEEEEehhccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999887777889999999999999999999988889999999999999999


Q ss_pred             HHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          392 TALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       392 ~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.++++ ++.+++|.|+|+++++..+          ..+++++|+++||++.+
T Consensus       312 ~~l~~~~~~~~~~v~g~G~~~~i~~~~~----------~~~~~~~l~~~GV~~~p  356 (389)
T PRK01278        312 EGLVDRFPDVIEEVRGKGLLLGLKCVVP----------NRDLVQALRDEGLLTVG  356 (389)
T ss_pred             HHHHhhCCCceeeEecccEEEEEEEecC----------HHHHHHHHHHCCeEEee
Confidence            99988887 7889999999999998432          45789999999999864

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=100.00  E-value=2.2e-59  Score=480.36  Aligned_cols=361  Identities=21%  Similarity=0.277  Sum_probs=287.5

Q ss_pred             HHHHHHHhhhcCCccccc---c-----CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           61 DEILAKRKTFLSPSLFHL---Y-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~---~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      .++.++..++++....++   +     ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.
T Consensus         2 ~~l~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~   81 (431)
T PRK06209          2 QLLQSRLHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC   81 (431)
T ss_pred             HHHHHHHHhhCCCCCCCCccccccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc
Confidence            356677777776543221   1     24789999999999999999999999999999999999999999999999875


Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEE-cCCcccCchhhhhccCCCCcc
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL-RNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~-~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      +  ....+....+|+++|++.+|. .++|+|+||||||||.|+|+||.+|||.+|+.+ .++|||...+....+....  
T Consensus        82 ~--~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~--  156 (431)
T PRK06209         82 N--FTRPSAIELDAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSA--  156 (431)
T ss_pred             C--CCCCCHHHHHHHHHHHHhCCc-cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCC--
Confidence            3  223455566899999999875 578999999999999999999999999999999 7888875433322211000  


Q ss_pred             ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE
Q 013235          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (447)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll  291 (447)
                       ..+. ....    .....++ +|    +++++++++.. ++++|+||+||++|+    .++++||++|+++|++||+++
T Consensus       157 -~~~~-~~~~----~~~~~~~-~d----~~~l~~~l~~~-~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lL  220 (431)
T PRK06209        157 -GIPA-SVSA----LTVTFRY-ND----IASLEALFEDH-PGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALF  220 (431)
T ss_pred             -CCCh-hHhc----cccccCC-CC----HHHHHHHHHhC-CCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEE
Confidence             0000 0000    0111122 34    57788877643 468999999999987    678999999999999999999


Q ss_pred             EEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHh--hc----CC--cccccCCCChHHHHH
Q 013235          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV--LT----RR--NYFNTFGGNPVCTAA  363 (447)
Q Consensus       292 I~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~--l~----~~--~~~~T~~~np~a~aa  363 (447)
                      |+|||||||++++  ++..+++|+.|||+|+||++|||+|+|++++++++++.  +.    ..  .|.+||++||++|++
T Consensus       221 I~DEv~tG~~~~~--~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aa  298 (431)
T PRK06209        221 ILDEMITGFRWHM--RGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAA  298 (431)
T ss_pred             EEEcccccCCcCc--chhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHH
Confidence            9999999998754  22334689999999999999999999999999999987  31    11  267899999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       364 ala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ++++|++|+++++.+++++++++|+++|+++.++++.+.+|||.|++++++++.......+.......+.++|+++||++
T Consensus       299 a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~  378 (431)
T PRK06209        299 AIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLM  378 (431)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccc
Confidence            99999999999999999999999999999999889999999999999999997543333344444557889999999986


Q ss_pred             e
Q 013235          444 F  444 (447)
Q Consensus       444 ~  444 (447)
                      .
T Consensus       379 p  379 (431)
T PRK06209        379 P  379 (431)
T ss_pred             c
Confidence            3

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=6.4e-58  Score=466.79  Aligned_cols=353  Identities=34%  Similarity=0.556  Sum_probs=300.9

Q ss_pred             HHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc
Q 013235           60 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL  139 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~  139 (447)
                      +++.++...+++.+.   +...|+++.+++|+|+||.|||+||||.+|+++++|||+||+|.+|+.++++++.+....|.
T Consensus         7 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~   83 (398)
T PRK03244          7 TAELLQRWQAVMMNN---YGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFA   83 (398)
T ss_pred             HHHHHHHHHHHhhhh---ccCCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccC
Confidence            345555555555443   22458999999999999999999999999999999999999999999999998776555678


Q ss_pred             chHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC--
Q 013235          140 NHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--  216 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--  216 (447)
                      ++...+|+++|++.++.. .++++|++||+||++.|+++++. +++++||.++++|||++.+++++++...+...+..  
T Consensus        84 ~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  162 (398)
T PRK03244         84 TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLP  162 (398)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCC
Confidence            888899999999998643 46899999999999999999987 67889999999999999999988764433222211  


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      ..+..++.         +|    .+++++.+.    +++++||+||+|+++|.+.++++|+++|+++|++||+++|+|||
T Consensus       163 ~~~~~~~~---------~d----~~~l~~~~~----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv  225 (398)
T PRK03244        163 GGVEHVPY---------GD----VDALAAAVD----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEV  225 (398)
T ss_pred             CCceEeCC---------CC----HHHHHHhhc----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence            22333332         23    566777663    37899999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhH
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL  376 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l  376 (447)
                      |+||||+| ++|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|++++++++
T Consensus       226 ~~g~gr~g-~~~~~~~~~~~pDi~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~  304 (398)
T PRK03244        226 QTGIGRTG-AWFAHQHDGVTPDVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGL  304 (398)
T ss_pred             ccCCcccc-hHHhhhhhCCCCCEEEEchhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccH
Confidence            99999999 67788889999999999999999999999999999999887666789999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          377 QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       377 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+++++++++|++.|+++  .++.+.+++|.|+|+++++..+         .+.++.++|+++||++.+
T Consensus       305 ~~~~~~~~~~l~~~L~~~--~~~~~~~v~g~g~~~~i~~~~~---------~~~~~~~~l~~~Gv~~~~  362 (398)
T PRK03244        305 LENAERLGEQLRAGIEAL--GHPLVDHVRGRGLLLGIVLTAP---------VAKAVEAAAREAGFLVNA  362 (398)
T ss_pred             HHHHHHHHHHHHHHHHhc--CCCceeeEeeccEEEEEEEecc---------HHHHHHHHHHHCCeEEee
Confidence            999999999999999887  4677889999999999999421         256789999999999864

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=7.8e-58  Score=466.69  Aligned_cols=340  Identities=31%  Similarity=0.537  Sum_probs=293.8

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      ..|+++.+++|+||||.||++||||.+|+++.+|||+||+|.+|+.+|++++.+....+.++...+|+++|++..+  .+
T Consensus        21 ~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~   98 (403)
T PRK05093         21 PAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATF--AE   98 (403)
T ss_pred             CCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCC--CC
Confidence            5689999999999999999999999999999999999999999999999986554444567778899999999873  46


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGV  231 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~  231 (447)
                      +++|++||+|||++|+|+||.++      ++++||+++++|||++.+++++++...+......  .++.+++.       
T Consensus        99 ~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  171 (403)
T PRK05093         99 RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------  171 (403)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------
Confidence            89999999999999999999985      6889999999999999999888765433322211  23344332       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~  311 (447)
                        +|    .+++++.+.    +++++||+||+++++|+++++++|+++|+++|++||+++|+||||+||||+| ++++++
T Consensus       172 --~d----~~~l~~~l~----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~~~~~~  240 (403)
T PRK05093        172 --ND----LAAVKAVID----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYM  240 (403)
T ss_pred             --CC----HHHHHHHhc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-cchhhh
Confidence              23    566777664    3689999999999999999999999999999999999999999999999999 677778


Q ss_pred             ccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       312 ~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L  391 (447)
                      ++++.||+++|||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|+++|
T Consensus       241 ~~~~~pdi~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L  320 (403)
T PRK05093        241 HYGVTPDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL  320 (403)
T ss_pred             hcCCCCCEEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999987666778999999999999999999988889999999999999999


Q ss_pred             HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++..+++.+.+++|.|+++++++..+.      .....++++.|+++||++.+
T Consensus       321 ~~~~~~~~~~~~~~~~G~~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~  368 (403)
T PRK05093        321 QKINQKYGVFSEIRGMGLLIGAELKPQY------KGRARDFLNAAAEEGVMVLV  368 (403)
T ss_pred             HHHHhhCCCeEeEeeCceEEEEEecCcc------hhHHHHHHHHHHHCCeEEec
Confidence            9987777888899999999999985321      12356789999999999864

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=2.1e-57  Score=463.28  Aligned_cols=358  Identities=27%  Similarity=0.457  Sum_probs=302.3

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~  140 (447)
                      ++++++..+|....   +.+.|+.+++++|+||||.||++||||.++++++++||+||+|.+|+.++++++.+.+..+.+
T Consensus         2 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~   78 (401)
T TIGR01885         2 EEAIERENKYGAHN---YHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYN   78 (401)
T ss_pred             hhHHHHHHHhhhcc---cCCCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCC
Confidence            35666666664332   335578899999999999999999999999999999999999999999999988766555568


Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~  212 (447)
                      +...+|+++|++.++  .++++|++||+|||+.|||+||.+        ++++.|++++++|||++.+++++++...+..
T Consensus        79 ~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~  156 (401)
T TIGR01885        79 DVFGEFAEYVTKLFG--YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT  156 (401)
T ss_pred             HHHHHHHHHHHhhcC--CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence            889999999999984  578999999999999999999987        3578899999999999999999887544332


Q ss_pred             cccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235          213 NVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (447)
Q Consensus       213 ~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~l  290 (447)
                      .+..  .++..++.         +|    .++++++++.. ++++++||+||+++++|.+.++++||++|+++|++||++
T Consensus       157 ~~~~~~~~~~~~~~---------~d----~~~le~~l~~~-~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~l  222 (401)
T TIGR01885       157 NFGPYVPGFKKIPY---------NN----LEALEEALEDH-GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVL  222 (401)
T ss_pred             ccCCCCCCceEeCC---------CC----HHHHHHHHHhc-CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            2211  23333332         23    57788887654 358999999999999999999999999999999999999


Q ss_pred             EEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      +|+||||+||||+| .+|+++++++.||++|+||++++| +|+|++++++++++.+....+.+||++||+++++++++|+
T Consensus       223 li~DEv~~g~g~~G-~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~  301 (401)
T TIGR01885       223 LIADEIQTGLGRTG-KLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALE  301 (401)
T ss_pred             EEEechhhCCCccc-hhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999 688888889999999999999987 8999999999999988765577899999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .++++++.+++++++++|+++|+++  .++++.+++|.|+|+++++.++..     ...+.++.+.|+++||++.+
T Consensus       302 ~i~~~~l~~~~~~~~~~~~~~L~~l--~~~~~~~~~g~g~~~~i~~~~~~~-----~~~~~~l~~~l~~~Gv~v~~  370 (401)
T TIGR01885       302 VLEEEKLAENAEKLGEIFRDQLKKL--PKPIITEVRGRGLLNAIVIDESKT-----GRTAWDLCLKLKEKGLLAKP  370 (401)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHhc--cCCceeEEeecCeeEEEEeccCcc-----hhHHHHHHHHHHhCCEEEEe
Confidence            9988889999999999999999988  356778999999999999854311     12357899999999999853

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=3.5e-57  Score=458.11  Aligned_cols=336  Identities=36%  Similarity=0.611  Sum_probs=291.9

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      +.|+.+++++|+|+||+|||+||||.+|+++++|||+||+|++|+.+|++++.+.+..+.++...+|+++|.+..+  .+
T Consensus        10 ~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   87 (377)
T PRK02936         10 RFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA--GD   87 (377)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC--CC
Confidence            4578999999999999999999999999999999999999999999999987665555567888899999988764  36


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCCCCCChH
Q 013235          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE  237 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~  237 (447)
                      .++|++||+|||++|++++|.++++++||+++++|||++.+++++++...++....+  .++..++.         +|  
T Consensus        88 ~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d--  156 (377)
T PRK02936         88 LVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPF---------ND--  156 (377)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCC---------CC--
Confidence            899999999999999999999999999999999999999999988765433222211  23333322         23  


Q ss_pred             HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCC
Q 013235          238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP  317 (447)
Q Consensus       238 ~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~p  317 (447)
                        .+++++.+.    +++++||+||+++++|.++++++|+++|+++|++||+++|+||||+||||+| ++++++++++.|
T Consensus       157 --~~~l~~~~~----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g-~~~~~~~~~~~~  229 (377)
T PRK02936        157 --IKALKEVMN----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG-TLFAYEQFGLDP  229 (377)
T ss_pred             --HHHHHHhcc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-hhhHHHhhCCCC
Confidence              566777664    3689999999999999999999999999999999999999999999999999 677778889999


Q ss_pred             CEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013235          318 DIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK  397 (447)
Q Consensus       318 Divt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~  397 (447)
                      |++||||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.++++++++++++.|+++..+
T Consensus       230 di~t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  309 (377)
T PRK02936        230 DIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEH  309 (377)
T ss_pred             cEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999987666778999999999999999999977789999999999999999997777


Q ss_pred             cCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       398 ~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+..+++.|+|+++++.++          ..++.+.|+++||++.+
T Consensus       310 ~~~~~~v~~~g~~~~i~~~~~----------~~~~~~~l~~~gv~v~~  347 (377)
T PRK02936        310 LECVKNIRGKGLMIGIECTEE----------VAPVIEQLREEGLLVLS  347 (377)
T ss_pred             CCcEEeEeecceEEEEEecch----------HHHHHHHHHHCCeEEec
Confidence            888889999999999998532          45688899999998864

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=1.9e-55  Score=449.06  Aligned_cols=353  Identities=28%  Similarity=0.467  Sum_probs=297.7

Q ss_pred             HHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc
Q 013235           60 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL  139 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~  139 (447)
                      +.++++....+....   +++.|+.+.+++|+|+||.||++||||.+|++++++||+||+|.+|+.+|++++.+.+..+.
T Consensus         5 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~   81 (401)
T PRK00854          5 SEDLIATEQRLGAHN---YKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFR   81 (401)
T ss_pred             CHHHHHHHhhhhhcc---cCCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccC
Confidence            356665544433222   34568899999999999999999999999999999999999999999999999877665566


Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      ++...+|+++|++..+.  ++++|+|||+|||++||+++|.+        +++++||++.++|||++..+++++..+.++
T Consensus        82 ~~~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~  159 (401)
T PRK00854         82 NDQLAPLYEELAALTGS--HKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDAR  159 (401)
T ss_pred             CHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccc
Confidence            88899999999998853  58999999999999999999987        356899999999999999888877654433


Q ss_pred             cccc--CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          212 FNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      ..+.  ..++.+++.+         |    .+++++.+.    +++++||+||++|++|.+.++++||++|+++|++||+
T Consensus       160 ~~~~~~~~~~~~~~~~---------d----~~~le~~i~----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi  222 (401)
T PRK00854        160 GGFGPFTPGFRVVPFG---------D----AEALEAAIT----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNV  222 (401)
T ss_pred             ccCCCCCCCeEEeCCC---------C----HHHHHHHhC----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            2222  1345555432         3    567777764    2689999999999999999999999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L  368 (447)
                      ++|+||||+|||++| .+|+.+++++.||++++||++++| +|+|++++++++++.+....+..||++||+++++++++|
T Consensus       223 ~lI~DEv~~g~g~~g-~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L  301 (401)
T PRK00854        223 TLILDEIQTGLGRTG-KLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAAL  301 (401)
T ss_pred             EEEEechhhCCCCCc-hHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHH
Confidence            999999999999999 677777889999999999999998 699999999999998876667789999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.++++++.++++++++++++.|+++.  +..+.+++|.|+|+.+++..+.       ....++++.|+++||++.
T Consensus       302 ~~l~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~g~~~~i~~~~~~-------~~~~~~~~~L~~~GV~v~  368 (401)
T PRK00854        302 KVLTEEGMIENAAEMGAYFLEGLRSIR--SNIVREVRGRGLMLAVELEPEA-------GGARQYCEALKERGLLAK  368 (401)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHhhc--cCceEEEeccceEEEEEEecCc-------hhHHHHHHHHHHCCeEEe
Confidence            999888899999999999999999873  3456778999999999986431       134679999999999985

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=8.6e-55  Score=443.99  Aligned_cols=342  Identities=28%  Similarity=0.476  Sum_probs=290.3

Q ss_pred             cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC
Q 013235           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL  158 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~  158 (447)
                      ...|+++++++|+|+||.||++||||++|++++++||+||+|.+|+.+|++.+.+.+..+.++...+++++|++..  +.
T Consensus        11 ~~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~   88 (400)
T PTZ00125         11 HPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF--GY   88 (400)
T ss_pred             CCCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC--CC
Confidence            3558899999999999999999999999999999999999999999999998877665555677778888887765  35


Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCc
Q 013235          159 KVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPY  228 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~  228 (447)
                      ++++|++||+||||.||+++|.+        +++++||+++++|||.+.++++.++...+.....  ..++..++.    
T Consensus        89 ~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  164 (400)
T PTZ00125         89 DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY----  164 (400)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC----
Confidence            78999999999999999999865        2467899999999999999998876433221111  123333322    


Q ss_pred             CCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcc
Q 013235          229 RGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW  308 (447)
Q Consensus       229 ~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~  308 (447)
                           +|    .+++++.+.   .+++++|++||+++++|.+.++++|+++|+++|++||+++|+||||+||||+| .++
T Consensus       165 -----~d----~~~le~~l~---~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G-~~~  231 (400)
T PTZ00125        165 -----ND----VEALEKLLQ---DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG-KLL  231 (400)
T ss_pred             -----CC----HHHHHHHhC---CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhh
Confidence                 23    577888775   24799999999999999999999999999999999999999999999999999 677


Q ss_pred             cccccCCCCCEEEeeccccCCc-cccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013235          309 GFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL  387 (447)
Q Consensus       309 ~~~~~gv~pDivt~sK~lg~G~-pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l  387 (447)
                      ..+.+++.||++++||++++|+ |+|++++++++++.+....+..||++||++++++.++|+.++++++.++++++++++
T Consensus       232 ~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l  311 (400)
T PTZ00125        232 AHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVF  311 (400)
T ss_pred             HHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            7788899999999999999885 999999999999988766677899999999999999999998888999999999999


Q ss_pred             HHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++|+++...++.+..+++.|+|+++++..+.      ......+++.|+++||++.+
T Consensus       312 ~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~------~~~~~~~~~~l~~~Gv~v~~  363 (400)
T PTZ00125        312 RDGLKELLKKSPWVKEIRGKGLLNAIVFDHSD------GVNAWDLCLKLKENGLLAKP  363 (400)
T ss_pred             HHHHHHHHhcCCCeEEEecccEEEEEEEccCc------chHHHHHHHHHHHCCeEEee
Confidence            99999987777888889999999999985321      12356789999999999864

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.3e-54  Score=439.11  Aligned_cols=334  Identities=33%  Similarity=0.539  Sum_probs=283.6

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      +.|+++++++|+||||.||++||||.+|++++++|| ||+|.+|+.+|++++.+....+.++...+++++|...   ...
T Consensus        10 ~~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~---~~~   85 (375)
T PRK04260         10 RAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD---KDY   85 (375)
T ss_pred             CCCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC---cCC
Confidence            457899999999999999999999999999999999 9999999999998875544344566666777666542   223


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCCCCCChH
Q 013235          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE  237 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~  237 (447)
                      .++|++||+|||+.|++++|.++++.+||+++++|||++..++++++...+...+..  ..+...+        + +|  
T Consensus        86 ~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~d--  154 (375)
T PRK04260         86 LAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI--------F-ND--  154 (375)
T ss_pred             EEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC--------C-CC--
Confidence            679999999999999999999999999999999999999999988765433222111  1111111        1 23  


Q ss_pred             HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCC
Q 013235          238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP  317 (447)
Q Consensus       238 ~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~p  317 (447)
                        ++++++.+.    +++++|++||+++++|.++++++||++++++|+++|+++|+||+|+|||++| .+|.++.+++.|
T Consensus       155 --l~~l~~~l~----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g-~~~~~~~~~~~p  227 (375)
T PRK04260        155 --LNSVKALVN----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG-KLYAFEHYGIEP  227 (375)
T ss_pred             --HHHHHHhcC----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-chhhhHhhCCCC
Confidence              566776653    3689999999999999999999999999999999999999999999999999 577778889999


Q ss_pred             CEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013235          318 DIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK  397 (447)
Q Consensus       318 Divt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~  397 (447)
                      ||+||||++++|+|+|++++++++++.+....+.+||++||++++++.++|+.++++++++++++.+++++++|.++..+
T Consensus       228 di~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  307 (375)
T PRK04260        228 DIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQD  307 (375)
T ss_pred             CEEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999887666889999999999999999999988899999999999999999999888


Q ss_pred             cCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       398 ~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+..++|.|+|+++++..+          ..++.++|+++||++.+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gi~v~~  345 (375)
T PRK04260        308 KETVTTVRGLGYMIGIETTAD----------LSQLVEAARDKGLIVLT  345 (375)
T ss_pred             CCCeeEEeccceEEEEEecCc----------HHHHHHHHHhCCCEEec
Confidence            887889999999999999321          35789999999999853

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2e-54  Score=440.62  Aligned_cols=353  Identities=36%  Similarity=0.588  Sum_probs=302.0

Q ss_pred             HHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc
Q 013235           60 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL  139 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~  139 (447)
                      +.++++..+.++...   +.+.|+++++++|+|+||.|||+||||.+|++++++||+||+|.+|+.+++++..+....|+
T Consensus         3 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~   79 (396)
T PRK02627          3 SEAIIELEKKYLMNT---YGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYY   79 (396)
T ss_pred             HHHHHHHHHHhhccc---ccCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccC
Confidence            456666666665443   33568999999999999999999999999999999999999999999999998766555678


Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCC-----CeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~-----~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ++...+|+++|++..  +.++++|++||+||+++|+++++.++++     .+|++++++|||.+..++++++...++...
T Consensus        80 ~~~~~~la~~l~~~~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  157 (396)
T PRK02627         80 IEPQEELAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGF  157 (396)
T ss_pred             CHHHHHHHHHHHhhc--CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccC
Confidence            889999999999986  4589999999999999999999998876     789999999999999999887654332211


Q ss_pred             cC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                      ..  .++..++.         +|    .+++++.+.    +++++||+||+++++|..+++++++++|+++|++||+++|
T Consensus       158 ~~~~~~~~~~~~---------~d----~~~l~~~i~----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI  220 (396)
T PRK02627        158 EPLVEGFIYVPF---------ND----IEALKAAIT----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLI  220 (396)
T ss_pred             CCCCCCceEeCC---------CC----HHHHHHhcC----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            11  23333322         23    566777663    3789999999999999888899999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~  372 (447)
                      +||+|+||||+| .+++++.+++.||+++|||++++|+|+|++++++++++.+....+.+||++||++++++.++|+.++
T Consensus       221 ~DE~~~g~g~~g-~~~~~~~~~~~pdi~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~  299 (396)
T PRK02627        221 LDEVQTGMGRTG-KLFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIE  299 (396)
T ss_pred             EechhcCCCccC-ceeeehhcCCCCCEEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999 6778888899999999999999999999999999999988766678999999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       373 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+++++++++++++|.++..+++.+..++|.|+|+++++..          ...++++.|+++||++.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~  362 (396)
T PRK02627        300 EEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDR----------PAAEIVKKALEKGLLINV  362 (396)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecC----------cHHHHHHHHHHCCeEEee
Confidence            888999999999999999999988887788899999999999821          146789999999999864

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=2e-53  Score=435.34  Aligned_cols=362  Identities=41%  Similarity=0.650  Sum_probs=302.5

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc-ccchHHHHHHHHHHHhCCCCC
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL-YLNHAIADFAEALASKMPGNL  158 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~~~~~~~elae~L~~~~~~~~  158 (447)
                      ..|+++++++|+|+||.||++||||.+|++.+++||+||+|.+|+.+++++..+.... +.++...+++++|++.++.+.
T Consensus        17 ~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~   96 (413)
T cd00610          17 PYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGL   96 (413)
T ss_pred             CCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCC
Confidence            4689999999999999999999999999999999999999999999999876543322 247788999999999997667


Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCCCCCCh
Q 013235          159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGVFGADG  236 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~~~~d~  236 (447)
                      ++++|++||+||++.|+++++.++++++|++++++|||++..++++++...+.....  ...+..++.+...+..  .+.
T Consensus        97 ~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  174 (413)
T cd00610          97 DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPP--AEL  174 (413)
T ss_pred             CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccch--hhH
Confidence            899999999999999999999999999999999999999999998876543322211  1234444443221100  111


Q ss_pred             HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCC
Q 013235          237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV  316 (447)
Q Consensus       237 ~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~  316 (447)
                      ...+++|++.+... ++++++||+||+++++|.+.++++|+++|+++|++||+++|+||||+||||+| ..+.++++++.
T Consensus       175 ~~d~~~l~~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g-~~~~~~~~~~~  252 (413)
T cd00610         175 ADDLEALEEALEEH-PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG-KMFAFEHFGVE  252 (413)
T ss_pred             HHHHHHHHHHHhcC-CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-chhhHhhcCCC
Confidence            11256777777643 45899999999999999999999999999999999999999999999999999 57777888999


Q ss_pred             CCEEEeeccccCCccccccccCHHHHHhh--cCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013235          317 PDIVTMAKGIGNGIPLGAVVTTPEIAEVL--TRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       317 pDivt~sK~lg~G~pigav~~~~~i~~~l--~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      ||++++||++++|+|+|++++++++++.+  ....+.+||++||++++++.++|+.++++++.+++++++++++++|+++
T Consensus       253 ~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~  332 (413)
T cd00610         253 PDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLREL  332 (413)
T ss_pred             CCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999986  3345678999999999999999999988889999999999999999998


Q ss_pred             HHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       395 ~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ...++.+..+++.|.++++++.++..+..++......+.+.|+++||++.+
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~  383 (413)
T cd00610         333 AEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRP  383 (413)
T ss_pred             HhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEee
Confidence            877777888999999999999765333334344567899999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-53  Score=401.38  Aligned_cols=386  Identities=25%  Similarity=0.345  Sum_probs=310.5

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCC
Q 013235           38 HETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH  117 (447)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~  117 (447)
                      .....|.-|...  .+.+|+|+++++.++..++......+|+   +..++.-|.||+|+|||.+||.++.+.++++||+|
T Consensus        20 ~~n~ep~gP~ik--TesIPGPks~~l~kel~~v~~t~~v~F~---~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~   94 (484)
T KOG1405|consen   20 DVNFEPDGPSIK--TESIPGPKSQELKKELDKVQDTEAVHFF---VDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNN   94 (484)
T ss_pred             ccccCCCCCccc--cccCCCchhHHHHHHHhHhhcccceEEe---hhhhhhcCceEEecCCCeeehhhhhhcccccCCCC
Confidence            344456666443  3468999999999998888766544443   56678899999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHh-ccc--ccccccch-HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc----------
Q 013235          118 PYVVDSIVN-QIKR-IQH--STVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT----------  182 (447)
Q Consensus       118 p~v~~A~~~-~l~~-~~~--~~~~~~~~-~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t----------  182 (447)
                      |.+++++++ |+.+ +..  ....|+.. ....+.+.|.+..|.+.+.|++.-+||.|||.|+|.|..+-          
T Consensus        95 P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~  174 (484)
T KOG1405|consen   95 PALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGF  174 (484)
T ss_pred             HHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCC
Confidence            999998864 3222 211  12234433 33345555667789899999999999999999999986541          


Q ss_pred             ----------------CCCeEEEEcCCcccCchhhhhccCCC-CccccccCCCeEeecCCCCcCCCCCC-------ChHH
Q 013235          183 ----------------GCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGA-------DGEM  238 (447)
Q Consensus       183 ----------------~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~~~g~~~~~~p~~~~~~~~~-------d~~~  238 (447)
                                      +.--|++|.++|||++.++++.|... ..+.+.|...|++.++|. |+.|...       ..+.
T Consensus       175 s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~-ykYPLdenv~~N~ked~~  253 (484)
T KOG1405|consen  175 SAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPR-YKYPLDENVAENKKEDQG  253 (484)
T ss_pred             CHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCCCCCCcc-ccCChhhhhhhhhhhhhh
Confidence                            12349999999999999999998754 456777778888888775 4444432       2356


Q ss_pred             HHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-
Q 013235          239 YAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-  315 (447)
Q Consensus       239 ~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-  315 (447)
                      |++++|++|.+..  ...+|++|+||||++||....+++|++.|+++|+|||+.+|+||||||-|-|| ++|++|+|++ 
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG-k~WaHehw~l~  332 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG-KFWAHEHWNLD  332 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC-ceeeehhcCCC
Confidence            8999999997643  24799999999999999999999999999999999999999999999999999 8999999998 


Q ss_pred             -CCCEEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 013235          316 -VPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       316 -~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~  393 (447)
                       -||+|||||-+- ||+     ...+++.-. ....+++||.|+|.-.....+++++|++++|.+++..+|+.|..+|.+
T Consensus       333 ~PpD~vTFSKK~q~gGf-----fh~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~  406 (484)
T KOG1405|consen  333 SPPDVVTFSKKFQTGGF-----FHDEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLE  406 (484)
T ss_pred             CCccceehhhhhhcCcc-----ccCcccCCC-chHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             589999999986 554     223332210 112478999999999999999999999999999999999999999999


Q ss_pred             HHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          394 LKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       394 l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      |+++|+ .+..+||+|.|+++++        |......+++..++-+||-++
T Consensus       407 Lq~~~p~~~~~~RGrGTF~a~d~--------ps~~~Rdk~i~~~~~nGv~~G  450 (484)
T KOG1405|consen  407 LQAKYPGKINNLRGRGTFIAWDC--------PSGSIRDKLILIARLNGVNLG  450 (484)
T ss_pred             HHHhCchhhhcccccceEEEEeC--------CChHHHHHHHHHHHHcCceec
Confidence            999996 5778999999999998        444567889999999999875

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=2e-46  Score=379.59  Aligned_cols=335  Identities=39%  Similarity=0.647  Sum_probs=282.1

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      +.|+++++++|+++||.||++||||.+|++++++||+||.|.+++.+++++..++...|+++...+|+++|++.++  .+
T Consensus         8 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~   85 (379)
T TIGR00707         8 RLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG--AD   85 (379)
T ss_pred             CCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC--CC
Confidence            5689999999999999999999999999999999999999999999999987665566788899999999999985  46


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhcC-----CCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYTG-----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVF  232 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t~-----~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~~~  232 (447)
                      +++++|||+||++.|+++++.+++     +++|++++++|||....+...++...+......  ..+...+        +
T Consensus        86 ~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  157 (379)
T TIGR00707        86 RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAP--------Y  157 (379)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeC--------C
Confidence            899999999999999999987765     689999999999999998877664432211100  1122221        1


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~  312 (447)
                       +|    .+++++.+..    ++++|++||+++++|..+++.+++++|.++|+++|+++|+||+|+|||++| .++.++.
T Consensus       158 -~d----~~~l~~~~~~----~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g-~~~~~~~  227 (379)
T TIGR00707       158 -ND----IESLKKAIDD----ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG-KFFAYEH  227 (379)
T ss_pred             -CC----HHHHHHHhhh----CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhhhHHh
Confidence             23    5667776642    578999999999999888899999999999999999999999999999988 5556667


Q ss_pred             cCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013235          313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       313 ~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~  392 (447)
                      .++.||+++|||++++|+|+|++++++++++.+....+..+|++||++++++.++|+.++++++.+++++++++++++|+
T Consensus       228 ~~~~~d~~t~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~  307 (379)
T TIGR00707       228 YGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLE  307 (379)
T ss_pred             cCCCCCEEEEcccccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999998876556788999999999999999998877899999999999999999


Q ss_pred             HHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       393 ~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++....+. ..+++.|+++++++.++          ..++.+.|+++||++.+
T Consensus       308 ~~~~~~~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gv~v~~  349 (379)
T TIGR00707       308 ELGKNYPN-KEVRGKGLMLGIELEAP----------CKDIVKKALEKGLLVNC  349 (379)
T ss_pred             HHHhhCCC-CccccCceEEEEEecCc----------HHHHHHHHHHCCcEEee
Confidence            87555543 45777899999987432          35788899999999874

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-36  Score=307.18  Aligned_cols=314  Identities=15%  Similarity=0.192  Sum_probs=226.8

Q ss_pred             CCeEEEeecccEEEecCCCeEEEecCCcccccCC-CCCHHHHHHHHHHHHhcc---cccc--cccchHHHHHHHHHHHhC
Q 013235           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQ---HSTV--LYLNHAIADFAEALASKM  154 (447)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~l~~~~---~~~~--~~~~~~~~elae~L~~~~  154 (447)
                      .++.+++|+|+++||.||++||||.++   ..+| |+||+|++|+.+|+++++   +...  .+.++...+++++|++.+
T Consensus        28 ~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~  104 (402)
T PRK07505         28 NGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF  104 (402)
T ss_pred             ccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh
Confidence            467899999999999999999999883   4788 999999999999999853   2222  244678899999999998


Q ss_pred             CCCCceEEEcCCHHHHHHHHHHHHHh--hc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          155 PGNLKVVFFTNSGTEANELAIMMARL--YT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       155 ~~~~~~v~~~~sGseA~e~Aik~ar~--~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      +.   .+++++||++|++.++++++.  ++ ++.++|+++++|||.......      +...  ..++..++.       
T Consensus       105 ~~---~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~------~~~~--~~~v~~~~~-------  166 (402)
T PRK07505        105 GA---SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKG------ICAD--ETEVETIDH-------  166 (402)
T ss_pred             CC---CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhh------hhhc--CCeEEEeCC-------
Confidence            64   567888999999999998764  24 567799999999984321111      1100  123444443       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc--cCccccCCCccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ--AGFARTGSHFWG  309 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~--tGfgr~G~~~~~  309 (447)
                        +|    .+++++++..   +..+++|+||++++|+..+     +++|+++|++||++||+||+|  ++||++| .++.
T Consensus       167 --~d----~~~l~~~~~~---~~~~~vl~~p~~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g-~~~~  231 (402)
T PRK07505        167 --ND----LDALEDICKT---NKTVAYVADGVYSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNG-EGYV  231 (402)
T ss_pred             --CC----HHHHHHHHhc---CCCEEEEEecccccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCC-CchH
Confidence              23    5677777653   3578999999998865543     899999999999999999998  6789999 5667


Q ss_pred             ccccCC-CCCEE----EeeccccCCccccccc-cCHHHHHhhcCCcccccCCCC--hHHHHHHHHHHHHHhhhhHHHHHH
Q 013235          310 FEAHGV-VPDIV----TMAKGIGNGIPLGAVV-TTPEIAEVLTRRNYFNTFGGN--PVCTAAGHAVLKVIQKDKLQNNAH  381 (447)
Q Consensus       310 ~~~~gv-~pDiv----t~sK~lg~G~pigav~-~~~~i~~~l~~~~~~~T~~~n--p~a~aaala~L~~i~~~~l~~~~~  381 (447)
                      .+++++ .||.+    ++||+++++  -|+++ .++++++.+....+..||++|  ++++++++++|+++.++.+.+.  
T Consensus       232 ~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~--  307 (402)
T PRK07505        232 RSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQL--  307 (402)
T ss_pred             HHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHH--
Confidence            788887 78855    799999853  25555 478898888765667788776  5899999999997766655443  


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                        .+++++.++.+...  ....++|.++++......+       ...+.++.+.|+++||++++
T Consensus       308 --~~~l~~~~~~~~~~--~~~~~~g~~~~i~~~~~~~-------~~~~~~~~~~l~~~Gi~v~~  360 (402)
T PRK07505        308 --QQKLQNNIALFDSL--IPTEQSGSFLPIRLIYIGD-------EDTAIKAAKQLLDRGFYTSP  360 (402)
T ss_pred             --HHHHHHHHHHHHHH--HHhcCCCCCCCEEEEEeCC-------HHHHHHHHHHHHHCCCeEee
Confidence              23444444332211  1123577777764322211       12356799999999999864

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=3.5e-33  Score=289.91  Aligned_cols=324  Identities=13%  Similarity=0.078  Sum_probs=237.9

Q ss_pred             eEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-----ccccchHHHHHHHHHHHhCCCC
Q 013235           83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALASKMPGN  157 (447)
Q Consensus        83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-----~~~~~~~~~elae~L~~~~~~~  157 (447)
                      +++.+++|++++ .+|++||||.++.+....  +||+|++|+.++++++++.+     ...+++.+.+|+++|+++++. 
T Consensus        94 ~~~~~~~G~~i~-~~G~~~id~~s~~~lgl~--~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-  169 (481)
T PLN02822         94 PVLESAAGPHTI-INGKDVVNFASANYLGLI--GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-  169 (481)
T ss_pred             CceecCCCCeEE-ECCceEEEeECCCcCCCC--CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-
Confidence            477889999999 899999999988664322  58999999999999965422     124578899999999999975 


Q ss_pred             CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChH
Q 013235          158 LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE  237 (447)
Q Consensus       158 ~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~  237 (447)
                      .+.++|+++++ ++.++++   .++++.++|+++..||+....++.+++..          +..++.         +|.+
T Consensus       170 ~~~i~~s~G~~-a~~sai~---a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~----------~~~~~~---------nd~~  226 (481)
T PLN02822        170 PDSILYSYGLS-TIFSVIP---AFCKKGDIIVADEGVHWGIQNGLYLSRST----------IVYFKH---------NDME  226 (481)
T ss_pred             CCEEEECCHHH-HHHHHHH---HhCCCCCEEEEeCCccHHHHHHHHHcCCe----------EEEECC---------CCHH
Confidence            36677775555 7888777   45678888889999998887777665422          222221         3433


Q ss_pred             HHHHHHHHHHHccC-CCCe-EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc--CccccCCCccccccc
Q 013235          238 MYAKDVQDLIDFGT-SGHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWGFEAH  313 (447)
Q Consensus       238 ~~~~~le~~i~~~~-~~~~-aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--Gfgr~G~~~~~~~~~  313 (447)
                      .+...++++-.... .+++ ++||+|++++++|.+.+    |++|+++|++||++||+||+|+  .+|++| +. ..+++
T Consensus       227 ~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G-~G-~~e~~  300 (481)
T PLN02822        227 SLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSG-RG-LSEHF  300 (481)
T ss_pred             HHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCC-CC-hHHHc
Confidence            32222332211110 1233 89999999999999987    9999999999999999999998  457777 33 45888


Q ss_pred             CC---CCCEEE--eecccc-CCccccccccCHHHHHhhcCCcccccCCCC--hHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 013235          314 GV---VPDIVT--MAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGN--PVCTAAGHAVLKVIQK-DKLQNNAHVVG  384 (447)
Q Consensus       314 gv---~pDivt--~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~n--p~a~aaala~L~~i~~-~~l~~~~~~~g  384 (447)
                      ++   .|||++  |||++| .|   |++++++++++.+....+..||+++  |..+++++++|+.+++ +++.+++++++
T Consensus       301 ~v~~~~~dii~~s~sKalg~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~  377 (481)
T PLN02822        301 GVPIEKIDIITAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENI  377 (481)
T ss_pred             CCCCCCCeEEEecchhhhhhCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            88   789987  889998 13   5688999999988766677899887  8899999999998876 67889999999


Q ss_pred             HHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       385 ~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ++|+++|+++. .+.  ....+.+.++.+.+.+.......+.....+++++|+ ++||++.+
T Consensus       378 ~~l~~~L~~~~-g~~--~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~  436 (481)
T PLN02822        378 ALLHKGLSDIP-GLS--IGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVV  436 (481)
T ss_pred             HHHHHHHHhcC-Ccc--cCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEe
Confidence            99999998752 121  122345777778874321111112234568999998 88999874

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=5.4e-31  Score=269.27  Aligned_cols=297  Identities=16%  Similarity=0.141  Sum_probs=223.0

Q ss_pred             CCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccc---c--cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST---V--LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~---~--~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      +|+++|+|+++.+   ||. +||+|++|+.++++++++..   .  .+.++...+|+++|+++++.  +.++|++||++|
T Consensus        43 ~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~SG~~A  117 (406)
T PRK13393         43 GPREVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--EAALLFTSGYVS  117 (406)
T ss_pred             CCccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEeCCcHHH
Confidence            4689999998754   666 69999999999999986532   1  13356788999999999964  678899999999


Q ss_pred             HHHHHH-HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          171 NELAIM-MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       171 ~e~Aik-~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+.|++ +++.+  +.++|+++..||+.+..++..++..          +..++.         +|    .+++++++..
T Consensus       118 n~~ai~~l~~~~--~g~~I~~~~~~H~s~~~~~~~~g~~----------~~~~~~---------~d----~~~l~~~l~~  172 (406)
T PRK13393        118 NWAALSTLGSRL--PGCVILSDELNHASMIEGIRHSRAE----------KRIFRH---------ND----PADLERKLSD  172 (406)
T ss_pred             HHHHHHHhhcCC--CCCEEEEccchhHHHHHHHHHcCCe----------EEEeCC---------CC----HHHHHHHHHh
Confidence            999999 55543  3468889999999988776654321          112221         23    4566666654


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-Cc-cccCCCcccccccCCC--CCEE--Eee
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGFEAHGVV--PDIV--TMA  323 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gf-gr~G~~~~~~~~~gv~--pDiv--t~s  323 (447)
                      ..++++++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |++| ..+ .++.++.  +||+  +||
T Consensus       173 ~~~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G-~g~-~~~~~~~~~~~i~~~tls  246 (406)
T PRK13393        173 LDPHRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRG-GGI-AEREGLADRLTIIEGTLA  246 (406)
T ss_pred             ccCCCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Cch-hhhcCCCCCCeEEEEeCc
Confidence            33346789999999999999987    9999999999999999999997 76 8888 444 3666665  6787  899


Q ss_pred             ccccC-CccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          324 KGIGN-GIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDK-LQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       324 K~lg~-G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      |++|. |   |++++++++++.+....  +..|++++|.+++++.++|+.+++.. ..++.++++++|++.|+++  .++
T Consensus       247 Ka~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  321 (406)
T PRK13393        247 KAFGVMG---GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA--GIP  321 (406)
T ss_pred             hhhcccC---ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence            99983 3   67888999988876533  23577889999999999999886543 3355678888999988775  333


Q ss_pred             CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       400 ~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                         .+++.|.|+.+.+.+        ...+.++.+.|++ +||++..
T Consensus       322 ---~~~~~~~i~~v~~~~--------~~~~~~l~~~L~~~~Gi~v~~  357 (406)
T PRK13393        322 ---HLPNPSHIVPVMVGD--------PVLCKQISDELLDRYGIYVQP  357 (406)
T ss_pred             ---cCCCCCCeEEEEeCC--------HHHHHHHHHHHHHhCCEEEEe
Confidence               347889998886521        1235678899988 5999863

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.97  E-value=1.9e-29  Score=257.55  Aligned_cols=300  Identities=17%  Similarity=0.166  Sum_probs=220.2

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      .+|+++++|+++.+ ..|+ +||+|++|+.++++++++.+.     .+.++...+|+++|+++++.  +.+++++||++|
T Consensus        42 ~~~~~~~~~~sn~y-lgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~--~~~l~~~sG~~a  117 (402)
T TIGR01821        42 DGAKDVTVWCSNDY-LGMG-QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK--ESALVFTSGYVA  117 (402)
T ss_pred             CCCeeEEEeEccCc-CCCC-CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC--CeEEEECchHHH
Confidence            35699999998765 3556 699999999999999765321     13467789999999999963  567889999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      |+.+++++... .+.++|+.+..||+.....+..++..          +...+.         +|    .++++++++..
T Consensus       118 n~~ai~~l~~~-~~~~~v~~~~~~h~s~~~~~~~~g~~----------~~~~~~---------~d----~~~l~~~l~~~  173 (402)
T TIGR01821       118 NDATLATLAKI-IPGCVIFSDELNHASMIEGIRHSGAE----------KFIFRH---------ND----VAHLEKLLQSV  173 (402)
T ss_pred             HHHHHHHhhCC-CCCCEEEEcchHhHHHHHHHHHcCCe----------EEEECC---------CC----HHHHHHHHHhc
Confidence            99999987643 23567778888998887666544321          111111         23    46677777654


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-C-ccccCCCcccccccCC--CCCEE--Eeec
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G-FARTGSHFWGFEAHGV--VPDIV--TMAK  324 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-fgr~G~~~~~~~~~gv--~pDiv--t~sK  324 (447)
                      .++++++|++|++++++|.+.+    +++|+++|++||+++|+||+|+ | +|..| .. ..+++++  .|||+  ||||
T Consensus       174 ~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g-~g-~~~~~~~~~~~div~~t~sK  247 (402)
T TIGR01821       174 DPNRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRG-GG-IAERDGLMHRIDIIEGTLAK  247 (402)
T ss_pred             cCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCC-Cc-cchhccCCCCCeEEEEechh
Confidence            3346789999999999999987    9999999999999999999998 4 35555 22 2355665  47888  8999


Q ss_pred             cccC-CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          325 GIGN-GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       325 ~lg~-G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      ++|. |   |++++++++++.+...  .+..|.+.||.++++++++|+.+++. .+.++.+++++++++.|+++  .++.
T Consensus       248 a~g~~G---G~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  322 (402)
T TIGR01821       248 AFGVVG---GYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL--GIPV  322 (402)
T ss_pred             hhccCC---ceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc--CCCc
Confidence            9983 3   6688999999888642  23456778999999999999998765 35566778888998888775  3332


Q ss_pred             eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       401 i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                         +...|.++.+.+.+        ...+.++.+.|++ +||++.+
T Consensus       323 ---~~~~~~i~~i~~~~--------~~~a~~~~~~L~~~~Gi~v~~  357 (402)
T TIGR01821       323 ---IPNPSHIVPVIIGD--------AALCKKVSDLLLNKHGIYVQP  357 (402)
T ss_pred             ---CCCCCCEEEEEeCC--------HHHHHHHHHHHHhcCCEEEEe
Confidence               23467788776521        1235678888875 5999864

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.97  E-value=3.8e-29  Score=255.80  Aligned_cols=297  Identities=17%  Similarity=0.192  Sum_probs=217.9

Q ss_pred             CCeEEEecCCcccccCCCC-CHHHHHHHHHHHHhccccc----cc-ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHST----VL-YLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~~~~----~~-~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~  171 (447)
                      |+++|||+++.+   ||+. ||+|++|+.++++++++..    .. ++++...+|+++|+++++.  +..++++||++||
T Consensus        45 ~~~~~~~~s~dy---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~--~~~~~~~sG~~an  119 (407)
T PRK09064         45 EREVTVWCSNDY---LGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK--EAALVFTSGYVSN  119 (407)
T ss_pred             CceEEEEECCCC---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC--CcEEEECcHHHHH
Confidence            689999987654   5666 9999999999999875532    12 3577889999999998863  5567889999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      +.++++++... ++.+|+.+.-+|+.....+...+..          +...+.         +|    .++++++++...
T Consensus       120 ~~ai~~l~~~~-~~~~i~~~~~~h~s~~~~~~~~~~~----------~~~~~~---------~d----~~~le~~l~~~~  175 (407)
T PRK09064        120 DATLSTLAKLI-PDCVIFSDELNHASMIEGIRRSRCE----------KHIFRH---------ND----VAHLEELLAAAD  175 (407)
T ss_pred             HHHHHHHhCCC-CCCEEEEeCcchHHHHHHHHHcCCc----------EEEECC---------CC----HHHHHHHHHhcc
Confidence            99999876442 3566666666677665544433211          111111         23    567777776543


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-C-ccccCCCcccccccCC--CCCEE--Eeecc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G-FARTGSHFWGFEAHGV--VPDIV--TMAKG  325 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-fgr~G~~~~~~~~~gv--~pDiv--t~sK~  325 (447)
                      ++++++|++|++++++|.+.+    +++|+++|++||++||+||+|+ | ||++| ..+ .++.++  .|||+  ||||+
T Consensus       176 ~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g-~g~-~~~~~~~~~~div~~t~sKa  249 (407)
T PRK09064        176 PDRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRG-GGI-AERDGLMDRIDIIEGTLAKA  249 (407)
T ss_pred             CCCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCC-CCh-HHhcCCCCCCeEEEEecchh
Confidence            346789999999999999887    9999999999999999999997 6 58888 343 456665  57888  89999


Q ss_pred             ccC-CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          326 IGN-GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKDK-LQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       326 lg~-G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      +|. |   |++++++++++.+...  .+..|.+.+|.++++++++|+.+++.+ ..+++++++++|++.|+++  .++.+
T Consensus       250 ~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  324 (407)
T PRK09064        250 FGVMG---GYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA--GIPVM  324 (407)
T ss_pred             hhccC---ceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCCCC
Confidence            973 3   6788899998877542  233467889999999999999987654 4578889999999999875  33332


Q ss_pred             eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                         ...+.++.+.+.+        ...+.++.+.|++ +||++..
T Consensus       325 ---~~~~~iv~i~~~~--------~~~~~~l~~~L~~~~gi~v~~  358 (407)
T PRK09064        325 ---PNESHIVPVMVGD--------PEKCKKASDMLLEEHGIYVQP  358 (407)
T ss_pred             ---CCCCCEEEEEeCC--------HHHHHHHHHHHHHhCCEEEee
Confidence               2446777776621        1235678888875 5999863

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.97  E-value=5.2e-29  Score=253.03  Aligned_cols=305  Identities=13%  Similarity=0.102  Sum_probs=211.9

Q ss_pred             EEecCCcccccCCCCCHHHHHHHHHHHHhccccc---c-cc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235          102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---V-LY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus       102 lD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~---~-~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      |||.++.+ ..|. +||++++++.+++++++..+   . .| ....+.+|+++|++++..  +..++++||+.|+..++.
T Consensus         1 ~~f~s~dy-Lgl~-~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~--e~al~~~sG~~a~~~~i~   76 (392)
T PLN03227          1 LNFATHDF-LSTS-SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT--ESAILYSDGASTTSSTVA   76 (392)
T ss_pred             CCCcCcCc-cCCC-CCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHHH
Confidence            45655443 2344 68999999999998753211   1 12 255788999999999964  456788999999998876


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc------
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG------  250 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~------  250 (447)
                      ..  ...++.|++-+..| +.....+.+...          .+..+..         +|.    ++++++++..      
T Consensus        77 ~l--~~~GD~Vl~~~~~h-~s~~~~~~l~~~----------~~~~~~~---------~d~----~~l~~~~~~i~~~~~a  130 (392)
T PLN03227         77 AF--AKRGDLLVVDRGVN-EALLVGVSLSRA----------NVRWFRH---------NDM----KDLRRVLEQVRAQDVA  130 (392)
T ss_pred             Hh--CCCCCEEEEecccc-HHHHHHHHHcCC----------eEEEeCC---------CCH----HHHHHHHHHhhhhccc
Confidence            53  33556666666655 444333322211          1111211         232    2233322211      


Q ss_pred             ----CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc--CccccCCCcccccccCCCC----CEE
Q 013235          251 ----TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWGFEAHGVVP----DIV  320 (447)
Q Consensus       251 ----~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--Gfgr~G~~~~~~~~~gv~p----Div  320 (447)
                          ...+...|++||+++++|.+++    +++|+++|++||+++|+||+++  .+|++| . |..+++|+.|    ||+
T Consensus       131 ~~~~~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G-~-g~~~~~g~~p~~~~Div  204 (392)
T PLN03227        131 LKRKPTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSG-R-GSLEHAGLKPMVHAEIV  204 (392)
T ss_pred             cccccCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCC-C-cHHHHcCCCCCCCceEE
Confidence                1125679999999999999987    9999999999999999999997  345555 3 5679999999    999


Q ss_pred             EeeccccCCccccccccCHHHHHhhcCCcccccCCCC--hHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013235          321 TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN--PVCTAAGHAVLKV-IQKDKLQNNAHVVGSYLKERLTALKDK  397 (447)
Q Consensus       321 t~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~n--p~a~aaala~L~~-i~~~~l~~~~~~~g~~l~~~L~~l~~~  397 (447)
                      ++|++-+.|.+.|++++++++++.+....+..||+++  |+.+++++++++. ++++++.+++++++++|+++|++  .+
T Consensus       205 ~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~--~~  282 (392)
T PLN03227        205 TFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN--SS  282 (392)
T ss_pred             EeechhhhhccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh--cC
Confidence            8774433344556678899998877655567889887  8888888877755 56678999999999999999987  36


Q ss_pred             cCCeeeEeec--------ceeEEEEEeeCCCCCCCC-HHHHHHHHHHHHhCCceee
Q 013235          398 YGIIGDVRGR--------GFLLGVEFVTDRQLKTPA-KAETLYIMDKMKGICALFF  444 (447)
Q Consensus       398 ~~~i~~vrg~--------Gl~~giel~~~~~~~~p~-~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++.+.++||.        |+|++|++.+++.+..+. .....++.+.|+++||++.
T Consensus       283 ~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~  338 (392)
T PLN03227        283 HPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVV  338 (392)
T ss_pred             CccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEE
Confidence            7788889884        558999995533222111 1134689999999999985

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.97  E-value=1.2e-27  Score=242.29  Aligned_cols=316  Identities=18%  Similarity=0.214  Sum_probs=223.8

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHH
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALA  151 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~  151 (447)
                      .|+.-.++.+++|+|||+ +|++||||.++.   ++|| +||+|++++.++++.+.+...     .+..+...+++++++
T Consensus        19 ~~~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la   94 (385)
T PRK05958         19 LYRSLRPREGGAGRWLVV-DGRRMLNFASND---YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELA   94 (385)
T ss_pred             CCccccccccCCCceeEe-CCceEEEeeCCC---cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHH
Confidence            345556789999999997 999999999874   4787 789999999999987542211     234667889999999


Q ss_pred             HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      +++.  .+.++++++|++++..+++..   .++.+.|++...+|+....+..+.+.          .+..++.       
T Consensus        95 ~~~~--~~~~i~~~~g~~~~~~~l~~~---~~~gd~V~~~~~~~~~~~~~~~~~g~----------~~~~~~~-------  152 (385)
T PRK05958         95 EWFG--AERALLFSSGYAANLAVLTAL---AGKGDLIVSDKLNHASLIDGARLSRA----------RVRRYPH-------  152 (385)
T ss_pred             HHhC--CCcEEEECcHHHHHHHHHHHh---CCCCCEEEEeCccCHHHHHHHHhcCC----------ceEEeCC-------
Confidence            9985  345677889999999887643   34444444556677766655444321          1122221       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-C-ccccCCCccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G-FARTGSHFWG  309 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-fgr~G~~~~~  309 (447)
                        .|    .+++++.++.. +++.++++++++++.+|.+.+    +++|.++|++||+++|+||+|+ | ++++|..+..
T Consensus       153 --~d----~~~l~~~i~~~-~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~  221 (385)
T PRK05958        153 --ND----VDALEALLAKW-RAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAA  221 (385)
T ss_pred             --CC----HHHHHHHHHhc-cCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHH
Confidence              13    46777777542 224788999999998887665    9999999999999999999995 3 3445521111


Q ss_pred             ccccCCCCC---EEEeeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 013235          310 FEAHGVVPD---IVTMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVV  383 (447)
Q Consensus       310 ~~~~gv~pD---ivt~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~-~l~~~~~~~  383 (447)
                      .......+|   +.+++|+++.  +.|++++++++++.+...  .+..+.+.+|++++++.++|+.+++. ++.+++.++
T Consensus       222 ~~~~~~~~~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~  299 (385)
T PRK05958        222 EAGLAGEPDVILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAAL  299 (385)
T ss_pred             hhCCCCCCceEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            112233567   4579999974  238888999988876432  34455678899999999999988764 678889999


Q ss_pred             HHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+.|+++  ...   -+++.|.|+.+.+.+        .....++.+.|+++||++.+
T Consensus       300 ~~~l~~~L~~~--~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gI~v~~  348 (385)
T PRK05958        300 IARLRAGLRAL--GFQ---LMDSQSAIQPLIVGD--------NERALALAAALQEQGFWVGA  348 (385)
T ss_pred             HHHHHHHHHHc--CCC---cCCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEec
Confidence            99999998875  222   234678888887621        12356799999999999963

>PRK07179 hypothetical protein; Provisional

Probab=99.96  E-value=1e-27  Score=245.25  Aligned_cols=301  Identities=17%  Similarity=0.188  Sum_probs=215.0

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccc--chHHHHHHHHHHH
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYL--NHAIADFAEALAS  152 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~~~--~~~~~elae~L~~  152 (447)
                      +.+.|++..++.|.+++|.+||.||||.          +||+|++|+.+++++++   +.+..+.  .+...+|+++|++
T Consensus        41 ~~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~  110 (407)
T PRK07179         41 WNGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAA  110 (407)
T ss_pred             cCCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHH
Confidence            4467899999999999999999999986          78999999999998762   2233333  3577899999999


Q ss_pred             hCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       153 ~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                      .++.  +.++|++||++||+.+++....  .++.|++ +.-.|..........            ++...+++.      
T Consensus       111 ~~g~--~~~~~~~sG~~An~~~l~~l~~--~g~~v~~-~~~~h~s~~~~~~~~------------g~~~~~~~~------  167 (407)
T PRK07179        111 FTGF--ESCLLCQSGWAANVGLLQTIAD--PNTPVYI-DFFAHMSLWEGVRAA------------GAQAHPFRH------  167 (407)
T ss_pred             HhCC--CcEEEECCHHHHHHHHHHHhCC--CCCEEEE-ECCcCHHHHHHHHHC------------CCeEEEecC------
Confidence            9854  5678899999999999986543  3344544 444443332222111            222222211      


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC--ccccCCCcccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGF  310 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--fgr~G~~~~~~  310 (447)
                       +|    .+++++.+..   .++++|++|++++++|.+.+    +++|.++|+++|+++|+||+|+.  +|++| ..+ +
T Consensus       168 -~d----~~~l~~~l~~---~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g-~g~-~  233 (407)
T PRK07179        168 -ND----VDHLRRQIER---HGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQG-AGL-V  233 (407)
T ss_pred             -CC----HHHHHHHHHh---cCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCC-Cch-H
Confidence             23    5677777753   24678999999999999987    99999999999999999999973  34455 222 3


Q ss_pred             cccCCC--CCEEE--eeccccCCccccccccCHHHHHhhcCCc----ccccCCCChHHHHHHHHHHHHHhhh-hHHHHHH
Q 013235          311 EAHGVV--PDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAH  381 (447)
Q Consensus       311 ~~~gv~--pDivt--~sK~lg~G~pigav~~~~~i~~~l~~~~----~~~T~~~np~a~aaala~L~~i~~~-~l~~~~~  381 (447)
                      +.+++.  +|+++  ++|++|+  ++|++++++++++.+....    +.+|+  ++..++++.++|+.+++. ++.++++
T Consensus       234 ~~~~~~~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~  309 (407)
T PRK07179        234 AELGLTSRVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLH  309 (407)
T ss_pred             HhcCCCCCCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            556764  48865  6899974  6899999999988775322    22332  355566677888887654 4778899


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ++.++|+++|+++  .+    .+++.|.++++++..        ......+.+.|.++||++
T Consensus       310 ~~~~~l~~~L~~~--g~----~v~~~~~i~~l~~~~--------~~~~~~~~~~L~~~GI~~  357 (407)
T PRK07179        310 ANARFLREGLSEL--GY----NIRSESQIIALETGS--------ERNTEVLRDALEERNVFG  357 (407)
T ss_pred             HHHHHHHHHHHHc--CC----CCCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceE
Confidence            9999999999876  33    345678899988632        123456888999999974

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.96  E-value=1.8e-26  Score=229.77  Aligned_cols=306  Identities=18%  Similarity=0.252  Sum_probs=232.7

Q ss_pred             eecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc--c---cccchHHHHHHHHHHHhCCCCCceE
Q 013235           87 DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST--V---LYLNHAIADFAEALASKMPGNLKVV  161 (447)
Q Consensus        87 ~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~--~---~~~~~~~~elae~L~~~~~~~~~~v  161 (447)
                      +..+.+++ .+|++++||++|.+ ..|. +||++++|+.+.+++.+...  .   .+.++.+.+|+++|++++  +.+.+
T Consensus        28 ~~~~~~~~-~~~~~~~nf~SNdY-LGLa-~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--g~e~a  102 (388)
T COG0156          28 RRQGLAIR-ADGRKVLNFCSNDY-LGLA-SHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--GAEAA  102 (388)
T ss_pred             ccCCccee-cCCceeEeeeccCc-cccc-CCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--CCCcE
Confidence            33455543 56999999999876 3344 58999999999999864321  1   356889999999999999  45678


Q ss_pred             EEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHH
Q 013235          162 FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK  241 (447)
Q Consensus       162 ~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~  241 (447)
                      ++++||..||..++-.   ..+++++|..+--.|.+...+..++....+.|.+                   +|    ++
T Consensus       103 l~f~SGy~AN~~~i~~---l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------------------nD----~~  156 (388)
T COG0156         103 LLFSSGFVANLGLLSA---LLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------------------ND----LD  156 (388)
T ss_pred             EEEcccchhHHHHHHH---hcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------------------CC----HH
Confidence            8999999999999973   3367899999999999988888877655444432                   45    67


Q ss_pred             HHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCC
Q 013235          242 DVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPD  318 (447)
Q Consensus       242 ~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pD  318 (447)
                      +||+.+++..  +.+...|++|.|.++.|.+.|    |++|.+++++||+++++||+++ +|-.|++.-++ +++|+.|+
T Consensus       157 ~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~~~  231 (388)
T COG0156         157 HLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLEPE  231 (388)
T ss_pred             HHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCCCc
Confidence            8888887621  115789999999999999999    9999999999999999999995 66555433333 78888754


Q ss_pred             ---EE--EeeccccC-CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Q 013235          319 ---IV--TMAKGIGN-GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKE  389 (447)
Q Consensus       319 ---iv--t~sK~lg~-G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~-~l~~~~~~~g~~l~~  389 (447)
                         |+  ||||++|. |   |++.+++.+.+.+...  .+.+|-+-+|..++++.++|+.+++. +..++++++..+++.
T Consensus       232 ~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~  308 (388)
T COG0156         232 EVDIIVGTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRS  308 (388)
T ss_pred             cceEEEEEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence               44  79999994 5   5789999999998764  45577778899999999999999854 677889999998885


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .+...  .+..   .+..-.++.+.+.+        +..+.++...|+++||++.
T Consensus       309 ~~~~~--~~~~---~~s~s~I~pv~~gd--------~~~a~~~s~~l~~~Gi~v~  350 (388)
T COG0156         309 LLKAL--GLVL---LPSESPIIPVILGD--------EERALEASRALLEEGIYVS  350 (388)
T ss_pred             HHHhc--CCcc---CCCCCCeeeeEeCC--------HHHHHHHHHHHHHCCeeEe
Confidence            54443  2211   23334455555533        3457889999999999986

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.95  E-value=2.9e-26  Score=232.59  Aligned_cols=313  Identities=15%  Similarity=0.152  Sum_probs=215.3

Q ss_pred             cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHH
Q 013235           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALAS  152 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~  152 (447)
                      |..|..+.+++|+||| .+|++||||.++   ..+|| +||.+++++.+++++..+...     .+..+...++++++++
T Consensus        14 ~~~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~   89 (385)
T TIGR01825        14 YISIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAK   89 (385)
T ss_pred             cccccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHH
Confidence            3457889999999999 999999999875   34688 899999999999986533211     2335678899999998


Q ss_pred             hCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       153 ~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                      .++.  +..++.+||++|+..+++...  .+++.|+ ....+|+.....+.+.+.            .....+       
T Consensus        90 ~~g~--~~~i~~~sG~~a~~~a~~~~~--~~gd~vi-~~~~~~~~~~~~~~~~g~------------~~~~~~-------  145 (385)
T TIGR01825        90 FKKT--EAALVFQSGFNTNQGVLSALL--RKGDIVL-SDELNHASIIDGLRLTKA------------TKKIYK-------  145 (385)
T ss_pred             HhCC--CcEEEECcHHHHHHHHHHHhC--CCCCEEE-EEccccHHHHHHHHhcCC------------ceEEeC-------
Confidence            8764  345677899999999888653  3445555 555566655544433221            111111       


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC--ccccCCCcccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGF  310 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--fgr~G~~~~~~  310 (447)
                      ..|    .+++++.+......++++|+++++++.+|.+.+    +++|.++|++||+++|+||+|+.  ++++| . ...
T Consensus       146 ~~d----~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~~~  215 (385)
T TIGR01825       146 HAD----MDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAG-R-GTV  215 (385)
T ss_pred             CCC----HHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCC-C-ccH
Confidence            123    455666665432336789999999999998776    89999999999999999999964  44445 2 223


Q ss_pred             cccCCCCC----EEEeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHH
Q 013235          311 EAHGVVPD----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVV  383 (447)
Q Consensus       311 ~~~gv~pD----ivt~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~  383 (447)
                      .++++.+|    +.+|||+++.  +.|++++++++++.+....  +..+...+|..++++.++|+.+++ +++.++++++
T Consensus       216 ~~~~~~~~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  293 (385)
T TIGR01825       216 HHFGLEDKVDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDN  293 (385)
T ss_pred             hhcCCCcCCcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            44455455    3589999963  3478888999988875432  222223578888899999987753 4678888889


Q ss_pred             HHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++++.+.|+++  .++.+   ...+.++++.+..        ......+++.|+++||++.
T Consensus       294 ~~~l~~~L~~~--g~~~~---~~~~~~~~~~~~~--------~~~~~~~~~~L~~~gi~v~  341 (385)
T TIGR01825       294 TRFFKAGLGKL--GYDTG---GSETPITPVVIGD--------EKAAQEFSRRLFDEGIFAQ  341 (385)
T ss_pred             HHHHHHHHHHc--CCCCC---CCCCCEEEEEECC--------HHHHHHHHHHHHHCCcEEc
Confidence            99999998775  23222   2334456655421        1224578899999999874

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.95  E-value=1.6e-25  Score=227.83  Aligned_cols=297  Identities=13%  Similarity=0.068  Sum_probs=212.5

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~  171 (447)
                      .++++|||.++.+ ..|+ +||+|++++.+.+++++..+.     ...+..+.+|+++|++++  +.+.+++++||..||
T Consensus       100 ~~r~~l~FsSndY-LGL~-~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--g~e~all~sSGy~AN  175 (476)
T PLN02955        100 RFKKLLLFSGNDY-LGLS-SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--KKEDCLVCPTGFAAN  175 (476)
T ss_pred             CCceEEEeeccCc-cCCC-CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--CCCcEEEECChHHHH
Confidence            4579999998765 3444 589999999999999864321     234567788999999998  456788999999999


Q ss_pred             HHHHHHHHh-----------hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235          172 ELAIMMARL-----------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (447)
Q Consensus       172 e~Aik~ar~-----------~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (447)
                      ..+|...-.           ..+++.+|+.+...|.+....+.++...        .++....++      + +|    +
T Consensus       176 ~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~--------~~a~~~~f~------H-ND----~  236 (476)
T PLN02955        176 MAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQ--------GNVEVFVYR------H-CD----M  236 (476)
T ss_pred             HHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhcccc--------CCceEEEeC------C-CC----H
Confidence            999975421           1256678889999998887777654210        011111111      1 45    6


Q ss_pred             HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC-cccccccCCCCCE
Q 013235          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWGFEAHGVVPDI  319 (447)
Q Consensus       241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~-~~~~~~~gv~pDi  319 (447)
                      ++|+++++.+. ++.+.||+|++.++.|.+.|    |++|.++|++||++||+||+++ +|+.|.. ....+++|+.||+
T Consensus       237 ~~Le~~L~~~~-~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~di  310 (476)
T PLN02955        237 YHLNSLLSSCK-MKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEADV  310 (476)
T ss_pred             HHHHHHHHhCC-CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCCCC
Confidence            78888887653 35678999999999999988    9999999999999999999996 4444421 2234788887776


Q ss_pred             ----EEeecccc--CCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 013235          320 ----VTMAKGIG--NGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKER  390 (447)
Q Consensus       320 ----vt~sK~lg--~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~~-~l~~~~~~~g~~l~~~  390 (447)
                          .||||++|  ||    ++++++++++.+....  +.+|-+.+|..+++++++|+.++++ ..+++++++.++|++.
T Consensus       311 ~ii~~TLsKA~G~~GG----fi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~  386 (476)
T PLN02955        311 DLCVGTLSKAAGCHGG----FIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL  386 (476)
T ss_pred             cEEEEeCccchhccCc----eeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence                58999998  55    4889999999887532  2233345566777888999988544 4567777777777762


Q ss_pred             HHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       391 L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +     .++.      ...++.|.+.        +...+.++.++|+++||++..
T Consensus       387 ~-----G~~~------~sPI~pI~ig--------~~~~a~~~~~~L~~~Gi~v~~  422 (476)
T PLN02955        387 S-----GVDI------SSPIISLVVG--------NQEKALKASRYLLKSGFHVMA  422 (476)
T ss_pred             c-----CCCC------CCCEEEEEeC--------CHHHHHHHHHHHHHCCCEEEE
Confidence            1     2221      1455556653        234567899999999999863

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.95  E-value=4.8e-25  Score=224.32  Aligned_cols=312  Identities=17%  Similarity=0.180  Sum_probs=213.7

Q ss_pred             CeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCC
Q 013235           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMP  155 (447)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~  155 (447)
                      +..+++++|.++||.+|+.||||.++.   ++|| +||++.+++.+++++..+...     ....+...++++.|++.++
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~i~l~~~~---~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g  101 (397)
T PRK06939         25 ERVITSPQGADITVADGKEVINFCANN---YLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG  101 (397)
T ss_pred             cccccCCCCceEEecCCCeEEEeeccC---ccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence            456789999999999999999998753   4677 689999999999987543211     1235667789999999886


Q ss_pred             CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCC
Q 013235          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (447)
Q Consensus       156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (447)
                      .. + .+++++|++++..+++..  ..+++.|++.++.|.+........ +            ...+..+.       .|
T Consensus       102 ~~-~-~i~~tsG~~a~~~~~~~l--~~~gd~vi~~~~~~~~~~~~~~~~-~------------~~~~~~~~-------~d  157 (397)
T PRK06939        102 TE-D-AILYSSCFDANGGLFETL--LGKEDAIISDALNHASIIDGVRLC-K------------AKRYRYAN-------ND  157 (397)
T ss_pred             CC-c-EEEEcChHHHHHHHHHHh--CCCCCEEEEEhhhhHHHHHHHHhc-C------------CceEEeCC-------CC
Confidence            43 4 456677899999998754  235678888888776554333221 1            11111111       23


Q ss_pred             hHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-Cc-cccCCCccccc
Q 013235          236 GEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGFE  311 (447)
Q Consensus       236 ~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gf-gr~G~~~~~~~  311 (447)
                          .+++++.+....  ..+++++++++++++.|...+    +++|.++|++||+++|+||+|. |+ ++.| . ....
T Consensus       158 ----~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~-~-~~~~  227 (397)
T PRK06939        158 ----MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENG-R-GTVE  227 (397)
T ss_pred             ----HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCC-C-CHHH
Confidence                456666664321  126788999999998887554    9999999999999999999995 43 3334 2 1223


Q ss_pred             ccCC--CCCEE--EeeccccCCccccccccCHHHHHhhcCCcccc--cCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 013235          312 AHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVG  384 (447)
Q Consensus       312 ~~gv--~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~~~~--T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g  384 (447)
                      .+++  .+|++  ++||.+++ .++|++++++++++.+.......  +...++..+++++++|+.+++ +++.++++++.
T Consensus       228 ~~~~~~~~~i~~~S~sK~~~g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  306 (397)
T PRK06939        228 HFGVMDRVDIITGTLGKALGG-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENA  306 (397)
T ss_pred             HcCCCCCCcEEEEECHHHhCc-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4454  46787  79999964 48999999999998876432222  223456677888888888754 35678888888


Q ss_pred             HHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       385 ~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++++.|+++  .+.   .+.+.|.++.+.+.        ......++++.|+++||.+.
T Consensus       307 ~~l~~~L~~~--~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~~gI~v~  353 (397)
T PRK06939        307 RYFREGMTAA--GFT---LGPGEHPIIPVMLG--------DAKLAQEFADRLLEEGVYVI  353 (397)
T ss_pred             HHHHHHHHHc--CCC---cCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCceEe
Confidence            8888888765  222   23355666655441        11235678999999999875

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.94  E-value=3.1e-25  Score=227.09  Aligned_cols=299  Identities=17%  Similarity=0.182  Sum_probs=208.0

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc----ccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST----VLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~----~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~  171 (447)
                      +|+++++|.++.+ ++|| +||+|++|+.++++++.+..    ..+ ..+...+|+++|+++++.  +..++++||++||
T Consensus        44 ~~~~~~~~~sn~y-l~l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~--~~~i~~~sG~~a~  119 (410)
T PRK13392         44 GPRRVTIWCSNDY-LGMG-QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK--ESALLFTSGYVSN  119 (410)
T ss_pred             CCceEEEEECCCc-cCCC-CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC--CCEEEECcHHHHH
Confidence            5789999998655 4566 69999999999999875421    122 234678999999999974  4567888999999


Q ss_pred             HHHHHHH-HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          172 ELAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       172 e~Aik~a-r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +.+++.. +.. . .++|+.+..+|+....++..++..          +..++.         +|    .+++++.++..
T Consensus       120 ~~~i~~l~~~~-~-g~~vi~~~~~h~s~~~~~~~~g~~----------~~~~~~---------~d----~~~l~~~l~~~  174 (410)
T PRK13392        120 DAALSTLGKLL-P-GCVILSDALNHASMIEGIRRSGAE----------KQVFRH---------ND----LADLEEQLASV  174 (410)
T ss_pred             HHHHHHHhcCC-C-CCEEEEehhhhHHHHHHHHHcCCe----------EEEEeC---------CC----HHHHHHHHHhc
Confidence            9999843 322 2 346666777898776555443321          111111         23    34555555543


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-Cc-cccCCCcccccccCC--CCCEE--Eeec
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGFEAHGV--VPDIV--TMAK  324 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gf-gr~G~~~~~~~~~gv--~pDiv--t~sK  324 (447)
                      ..+++.+|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |+.| ..+ .++.++  .+|++  +|||
T Consensus       175 ~~~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g-~g~-~~~~~~~~~~div~~tlsK  248 (410)
T PRK13392        175 DPDRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARG-GGI-AERDGLMDRIDMIQGTLAK  248 (410)
T ss_pred             cCCCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCC-Cch-hhhccCCCCCcEEEEEChH
Confidence            3346789999999999999887    9999999999999999999998 43 6665 222 244454  46887  8999


Q ss_pred             cccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          325 GIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDK-LQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       325 ~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      ++|.  +-|++++++++++.+....  +..+.+.+|++++++.++|+.++... ..+++++..+++++.|+++  .+.. 
T Consensus       249 ~~g~--~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-  323 (410)
T PRK13392        249 AFGC--LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN--GIPV-  323 (410)
T ss_pred             hhhc--ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCCC-
Confidence            9973  1277888999998765432  23456678899999999999876443 4456777888888888775  2322 


Q ss_pred             eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                        .++.+.++.+.+.+        .....++.+.|+ ++||++..
T Consensus       324 --~~~~~~~~~i~~~~--------~~~~~~~~~~L~~~~GI~v~~  358 (410)
T PRK13392        324 --MPSPSHIVPVMVGD--------PTLCKAISDRLMSEHGIYIQP  358 (410)
T ss_pred             --CCCCCCEEEEEeCC--------HHHHHHHHHHHHHhCCEEEee
Confidence              24566676665521        123567888887 67999864

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.94  E-value=1.7e-24  Score=220.31  Aligned_cols=316  Identities=17%  Similarity=0.184  Sum_probs=215.8

Q ss_pred             cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCC-CHHHHHHHHHHHHhccc--cccc---ccchHHHHHHHHHHH
Q 013235           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQH--STVL---YLNHAIADFAEALAS  152 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~~--~~~~---~~~~~~~elae~L~~  152 (447)
                      ++.|..+.+++|.++++.+|++||||.+|.   .+|++ ||++++++.+++++.+.  ....   ...+...+|+++|++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~---~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~   94 (393)
T TIGR01822        18 FKSERIITSPQGADIRVADGREVLNFCANN---YLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAA   94 (393)
T ss_pred             CCcccccccCCCceEEecCCceEEEeeCCC---ccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence            445677888999999999999999999884   45666 89999999999987422  2222   225567889999999


Q ss_pred             hCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       153 ~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                      ++..  +.+++++||++|+..++...  ..+++.|++.+..|++...+. .+.+..         ++ ...         
T Consensus        95 ~~g~--~~~ii~~~~~~a~~~~~~~l--~~~gd~vi~~~~~~~s~~~~~-~~~~~~---------~~-~~~---------  150 (393)
T TIGR01822        95 FLGT--EDTILYASCFDANGGLFETL--LGAEDAIISDALNHASIIDGV-RLCKAK---------RY-RYA---------  150 (393)
T ss_pred             HhCC--CcEEEECchHHHHHHHHHHh--CCCCCEEEEeccccHHHHHHH-HhcCCc---------eE-EeC---------
Confidence            9964  45667799999999877643  235577777776665443322 221111         11 111         


Q ss_pred             CCChHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC-ccc
Q 013235          233 GADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWG  309 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~-~~~  309 (447)
                      .+|    .+++++.+....  ..++.+|+++++++++|.+.+    +++|.++|++||+++|+||+|. +|..|.. ...
T Consensus       151 ~~d----~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~-~g~~~~~~~~~  221 (393)
T TIGR01822       151 NND----MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHA-TGFLGPTGRGS  221 (393)
T ss_pred             CCC----HHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCcc-ccCcCCCCCch
Confidence            134    456666665321  126788999999999998876    9999999999999999999993 4333211 111


Q ss_pred             ccccCC--CCCEE--EeeccccCCccccccccCHHHHHhhcCCcccccCC--CChHHHHHHHHHHHHHhh-hhHHHHHHH
Q 013235          310 FEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLKVIQK-DKLQNNAHV  382 (447)
Q Consensus       310 ~~~~gv--~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~L~~i~~-~~l~~~~~~  382 (447)
                      .+..++  .+|++  +++|.++ |+++|++++++++++.+........++  .++..+++++++|+.+++ +++.+++++
T Consensus       222 ~~~~~~~~~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  300 (393)
T TIGR01822       222 HELCGVMGRVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWA  300 (393)
T ss_pred             HHhcCCCCCCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            233444  36777  6899997 468999999999998876532222333  356667778888887754 457788899


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.+++++.|+++  .+..   ..+.+.++.+.+.+        .....++.+.|+++||++.
T Consensus       301 ~~~~l~~~L~~~--g~~~---~~~~~~~~~i~~~~--------~~~~~~l~~~L~~~gI~v~  349 (393)
T TIGR01822       301 NTRYFRERMEAA--GFDI---KPADHPIIPVMLYD--------AVLAQRFARRLLEEGIYVT  349 (393)
T ss_pred             HHHHHHHHHHHc--CCCC---CCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCeeEe
Confidence            999999888764  2322   12345566665421        2235678999999999885

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.94  E-value=8e-24  Score=212.21  Aligned_cols=307  Identities=17%  Similarity=0.176  Sum_probs=209.7

Q ss_pred             EeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCCCCCc
Q 013235           86 VDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      .++.|.++. .+|++||||.+|   .++|| +||+|++++.++++++.....     ....+...++++.|++++..  +
T Consensus         4 ~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~--~   77 (360)
T TIGR00858         4 DRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT--E   77 (360)
T ss_pred             ccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--C
Confidence            477899996 899999999997   36896 789999999999987533211     12246678899999998853  3


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHH
Q 013235          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (447)
                      ..++.++|++++..+++.+  ..+++.|++.+++ |..........+.          .+..++.         .|    
T Consensus        78 ~~i~~~~G~~~~~~~l~~~--~~~gd~v~~~~~~-~~~~~~~~~~~g~----------~~~~~~~---------~d----  131 (360)
T TIGR00858        78 AALLFSSGYLANVGVISAL--VGKGDLILSDALN-HASLIDGCRLSGA----------RVRRYRH---------ND----  131 (360)
T ss_pred             CEEEECchHHHHHHHHHHh--CCCCCEEEEEccc-cHHHHHHHHhcCC----------ceEEecC---------CC----
Confidence            4566778899999887644  2345566665554 4444333332211          1112211         23    


Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC-cccccccCCCCC
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWGFEAHGVVPD  318 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~-~~~~~~~gv~pD  318 (447)
                      .+++++.+......++++++++++++++|.+.+    +++|.++|+++|+++|+||+|+ +|..+.. ......+++.||
T Consensus       132 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~  206 (360)
T TIGR00858       132 VEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPE  206 (360)
T ss_pred             HHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCcc
Confidence            466777776432135688999999888887765    9999999999999999999996 4433211 112244556554


Q ss_pred             -----EEEeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Q 013235          319 -----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKER  390 (447)
Q Consensus       319 -----ivt~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g~~l~~~  390 (447)
                           +.+++|+++.  +.|++++++++++.+....  +..+.+.++.+++++.++|+.++. +++.++++++.+++.+.
T Consensus       207 ~~~i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~  284 (360)
T TIGR00858       207 PVDIQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAG  284 (360)
T ss_pred             CCcEEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence                 5579999975  2388999999888775322  223445678888888899987754 35778888889999988


Q ss_pred             HHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       391 L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      |+++  .+.   -....|.++++.+..        .....++++.|+++||++.
T Consensus       285 L~~~--~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gI~v~  325 (360)
T TIGR00858       285 LEAL--GFT---LMPSCTPIVPVIIGD--------NASALALAEELQQQGIFVG  325 (360)
T ss_pred             HHHc--CCc---cCCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCeeEe
Confidence            8775  222   123457788887631        1234678999999999985

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=8.8e-23  Score=206.02  Aligned_cols=297  Identities=16%  Similarity=0.158  Sum_probs=198.7

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC------CCCCceEEEcCCHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~------~~~~~~v~~~~sGseA~e~  173 (447)
                      ..||+..|..  +++ .+|.+.+++.+.+.........|+.+...+|.+.+++++      +.+.++|+++++++|++..
T Consensus        27 ~~i~l~~~~~--~~~-~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~  103 (368)
T PRK03317         27 VPVRLNTNEN--PYP-PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ  103 (368)
T ss_pred             ceeEecCCCC--CCC-CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence            4688887765  556 789999999988764322234566555667777787776      3456789999999999999


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      +++...  ..++.|++..++|++....+...             |+..++.|.  ...|+.|    .+++++.+...   
T Consensus       104 ~~~~~~--~~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~~~~--~~~~~~d----~~~l~~~~~~~---  159 (368)
T PRK03317        104 LLQAFG--GPGRTALGFVPSYSMHPIIARGT-------------HTEWVEGPR--AADFTLD----VDAAVAAIAEH---  159 (368)
T ss_pred             HHHHhc--CCCCEEEEeCCChHHHHHHHHhc-------------CCeeEEccc--CCCCCCC----HHHHHHHHhcc---
Confidence            998553  25678999999998766544321             233333322  1123344    56677666532   


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CC
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NG  329 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G  329 (447)
                      ++.++++...++++|.+.+    .++++++|+.+++++|+||+|++|++.| .....+..+..|+++   +|||.+| .|
T Consensus       160 ~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~-~~~~~~~~~~~~~~i~~~SfSK~~g~~G  234 (368)
T PRK03317        160 RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSG-TPSALTLLPEYPRLVVSRTMSKAFAFAG  234 (368)
T ss_pred             CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccC-CcCHHHHHHhCCCEEEEEechhhhccch
Confidence            2233444444677888876    7788888888899999999999998776 344445555567877   8999998 79


Q ss_pred             ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecce
Q 013235          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl  409 (447)
                      +|+|++++++++++.+....  .+|+.++++++++.++|+..  +.+.++.+++.+ .++.+.+..++++. .-....|.
T Consensus       235 lRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~~~-~~~~l~~~L~~~g~-~~~~~~~~  308 (368)
T PRK03317        235 GRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA--DELLASVAALRA-ERDRVVAWLRELGL-RVAPSDAN  308 (368)
T ss_pred             hhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH--HHHHHHHHHHHH-HHHHHHHHHHHCCC-EeCCCCCc
Confidence            99999999999999887533  47889999999999998643  234444433322 23333333334432 22334454


Q ss_pred             eEEE-EEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          410 LLGV-EFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       410 ~~gi-el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+ .+        +   ...++.+.|+++||++..
T Consensus       309 ~~~~~~~--------~---~~~~~~~~l~~~Gv~v~~  334 (368)
T PRK03317        309 FVLFGRF--------A---DRHAVWQGLLDRGVLIRD  334 (368)
T ss_pred             EEEEecc--------C---CHHHHHHHHHHCCEEEEe
Confidence            4433 22        1   135688899999999864

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.90  E-value=1.2e-21  Score=198.02  Aligned_cols=287  Identities=14%  Similarity=0.130  Sum_probs=191.6

Q ss_pred             CeEEEecCCcccccCCCC-CHHHHHHHHHHHHhc--------cccccc----ccchHHHHHHHHHHHhCCCCCceEEEcC
Q 013235           99 RRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRI--------QHSTVL----YLNHAIADFAEALASKMPGNLKVVFFTN  165 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~--------~~~~~~----~~~~~~~elae~L~~~~~~~~~~v~~~~  165 (447)
                      .++|||.++.+   ||++ ||.+.+++.+++.+.        .|....    ..++.+.+++++|+++++.  +.+++++
T Consensus         4 ~~~~~~~s~~Y---L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~--~~~l~~~   78 (370)
T PRK05937          4 SLSIDFVTNDF---LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA--PEAFIVP   78 (370)
T ss_pred             CceEEeECCCc---cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CeEEEEC
Confidence            35788887654   6665 899999999998775        222221    2467889999999999965  4568899


Q ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       166 sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      ||+.||...+.   .+.++.++|+.+..+|+....++.....  +.          +.++      . +|    .++|++
T Consensus        79 sG~~a~~~~~~---~~~~~~d~ii~d~~~H~sv~~~~~~~~~--~~----------~~~~------~-~d----~~~l~~  132 (370)
T PRK05937         79 SGYMANLGLCA---HLSSVTDYVLWDEQVHISVVYSLSVISG--WH----------QSFR------H-ND----LDHLES  132 (370)
T ss_pred             ChHHHHHHHHH---HhCCCCCEEEEEhhhhHHHHHHHHHcCC--ce----------EEec------C-CC----HHHHHH
Confidence            99999864433   2345678999999999998887655321  11          1111      1 34    567777


Q ss_pred             HHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-C-ccccCCCcccc--cccCCCCCE
Q 013235          246 LIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G-FARTGSHFWGF--EAHGVVPDI  319 (447)
Q Consensus       246 ~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-fgr~G~~~~~~--~~~gv~pDi  319 (447)
                      +++...  +++..+|+++++++++|.+.|    +++|.++|+++|+++|+||+|+ | +|++| ..+..  ...++.+|+
T Consensus       133 ~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g-~g~~~~~~~~~~~~~~  207 (370)
T PRK05937        133 LLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDG-KGFCHSLGYENFYAVL  207 (370)
T ss_pred             HHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCC-CchHHhhCCCCCcEEE
Confidence            776432  124557889999999999998    9999999999999999999997 4 56666 22211  111233678


Q ss_pred             EEeeccccC-CccccccccCHHHHHhhcC--CcccccCCCChHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHH
Q 013235          320 VTMAKGIGN-GIPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCTAAGHAVLKVIQKD--KLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       320 vt~sK~lg~-G~pigav~~~~~i~~~l~~--~~~~~T~~~np~a~aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l  394 (447)
                      .||||++|+ |   ++++..+++.+.+..  ..+..+.+.+|.+++++.++++.++++  ...++++++.++|++.|...
T Consensus       208 ~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~  284 (370)
T PRK05937        208 VTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA  284 (370)
T ss_pred             EechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC
Confidence            899999985 5   335566776555432  234455567888888888999988654  24455666666665544321


Q ss_pred             HHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       395 ~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                                 +.+....+.+..         .....+.+.|.++||++.
T Consensus       285 -----------~~~~~~~i~~~~---------~~~~~~~~~L~~~gi~v~  314 (370)
T PRK05937        285 -----------APGCVQPIFLPG---------ISEQELYSKLVETGIRVG  314 (370)
T ss_pred             -----------CCCCEEEEEeCC---------hhHHHHHHHHHHCCeeEE
Confidence                       112233344421         123568888999999886

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1.2e-21  Score=197.18  Aligned_cols=294  Identities=13%  Similarity=0.099  Sum_probs=195.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      .+|||.+|..  ++| .+|.+.+|+.++++.+.    .|+.....++.+.+++++..+.+++++++++++++..+++...
T Consensus        30 ~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~----~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~  102 (359)
T PRK03158         30 KIVKLASNEN--PYG-PSPKVKEAIAAHLDELA----LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL  102 (359)
T ss_pred             ceEEecCCCC--CCC-CCHHHHHHHHHHHHHhh----cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh
Confidence            6899998876  467 58999999998877642    3455567789999999887666789999999999988876442


Q ss_pred             hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                        ..++.|++.+++|++....+....           ..+..++..     .++.|    .+++++.+.   + ++.+++
T Consensus       103 --~~gd~v~~~~p~y~~~~~~~~~~g-----------~~~~~~~~~-----~~~~d----~~~l~~~~~---~-~~~~v~  156 (359)
T PRK03158        103 --NPGTNTVMAEPTFSQYRHNAIIEG-----------AEVREVPLK-----DGGHD----LEAMLKAID---E-QTKIVW  156 (359)
T ss_pred             --CCCCEEEEcCCCHHHHHHHHHHcC-----------CeEEEEecC-----CCCcC----HHHHHHhcC---C-CCCEEE
Confidence              356789999999987554332211           012223221     12233    455555543   2 344555


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCC-EE--Eeecccc-CCcccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-IV--TMAKGIG-NGIPLG  333 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD-iv--t~sK~lg-~G~pig  333 (447)
                      +...++++|.+.+    .+++.++++.  +|+++|+||+|..|-..+.........+..+. ++  +|||.+| .|+|+|
T Consensus       157 i~~p~NPtG~~~~----~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG  232 (359)
T PRK03158        157 ICNPNNPTGTYVN----HEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVG  232 (359)
T ss_pred             EeCCCCCCCCCCC----HHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhe
Confidence            5555788888875    3445555544  69999999999877433311111111111222 33  7999999 799999


Q ss_pred             ccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       334 av~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      ++++++++++.+....  .+|+.|++++.++.++|+   ++++.+++++..+..++.+.+..++++ +..+++.|+++++
T Consensus       233 ~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~~i~~  306 (359)
T PRK03158        233 YGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYG-LFYYPSQTNFIFV  306 (359)
T ss_pred             hhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeCCCcCcEEEE
Confidence            9999999998886432  457889999999988885   345555555554555555555555553 3335677899988


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      ++..+          ..++++.|+++||++.+.
T Consensus       307 ~~~~~----------~~~~~~~l~~~gv~v~~g  329 (359)
T PRK03158        307 DTGRD----------ANELFEALLKKGYIVRSG  329 (359)
T ss_pred             ECCCC----------HHHHHHHHHHCCeEEeeC
Confidence            87311          356888999999999763

>PLN02483 serine palmitoyltransferase

Probab=99.89  E-value=5.7e-21  Score=199.07  Aligned_cols=304  Identities=16%  Similarity=0.153  Sum_probs=199.0

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc--ccc--c-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVL--Y-LNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~--~~~--~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      .+++++|+|.|+.+ ..|+.+|+.+.+++.+++++++..  ..+  | .++.+.+++++|++++..  +..++.++|+.+
T Consensus        97 ~~~~~~~n~~s~~Y-Lgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~--~~ai~~~~G~~a  173 (489)
T PLN02483         97 TKTRRCLNLGSYNY-LGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK--PAAIVFGMGYAT  173 (489)
T ss_pred             CCCceEEEeecCCc-cCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHH
Confidence            35789999987665 334434678888888888886532  222  3 478889999999999963  335566889999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      |..++...  ..+++.|++.+.+|.+... .....            |......|.       +|.+.+.+.+++.+...
T Consensus       174 n~~~i~al--~~~Gd~Vi~d~~~h~s~~~-~~~~~------------Ga~v~~~~~-------~d~~~le~~l~~~i~~~  231 (489)
T PLN02483        174 NSTIIPAL--IGKGGLIISDSLNHNSIVN-GARGS------------GATIRVFQH-------NTPSHLEEVLREQIAEG  231 (489)
T ss_pred             HHHHHHHh--CCCCCEEEEcchhhHHHHH-HHHHc------------CCeEEEEeC-------CCHHHHHHHHHhhhhcc
Confidence            98777643  2355667766666655333 32222            222222211       23222222233322211


Q ss_pred             -----CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC--ccccCCCcccccccCCCC---CEE
Q 013235          251 -----TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVVP---DIV  320 (447)
Q Consensus       251 -----~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--fgr~G~~~~~~~~~gv~p---Div  320 (447)
                           .|.....|++|++.++.|.+.+    +++|.++|++||+++|+||+|+-  +|++| .. ..+++++.|   ||+
T Consensus       232 ~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G-~g-~~~~~~v~~~~~dI~  305 (489)
T PLN02483        232 QPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTG-RG-VCELLGVDPADVDIM  305 (489)
T ss_pred             ccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCC-Cc-hHHhcCCCcccCcEE
Confidence                 1223468999999999998887    99999999999999999999962  45555 22 335666644   677


Q ss_pred             --EeeccccCCccccccccCHHHHHhhcCCcccccCC--CChHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHH
Q 013235          321 --TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLKVIQKD-------KLQNNAHVVGSYLKE  389 (447)
Q Consensus       321 --t~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~L~~i~~~-------~l~~~~~~~g~~l~~  389 (447)
                        +|+|++|.  +.|++++++++++.+.......+|+  .+|..+++++++|+.+..+       +..++++++.++|++
T Consensus       306 ~~SfSKs~g~--~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~  383 (489)
T PLN02483        306 MGTFTKSFGS--CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRS  383 (489)
T ss_pred             EEecchhccc--CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence              89999973  2278999999999887544444444  4678888888899887532       345677788888888


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .|+++  .+.+...  ..+.++++.+..        .....++.++|+++||++.
T Consensus       384 ~L~~~--G~~v~~~--~~sp~~~l~l~~--------~~~~~~~~~~Ll~~GI~v~  426 (489)
T PLN02483        384 ELQKM--GFEVLGD--NDSPVMPIMLYN--------PAKIPAFSRECLKQNVAVV  426 (489)
T ss_pred             HHHHC--CCcccCC--CCCCEEEEEECC--------HHHHHHHHHHHHHCCcEEe
Confidence            88775  2322211  224566666532        1235678999999999986

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.89  E-value=5.9e-21  Score=193.56  Aligned_cols=308  Identities=15%  Similarity=0.120  Sum_probs=200.9

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      ++..+||+..+..  .++ .+|.+.+++.+.+....  ...|.. ....++.++++++++.+.++|++++|+++|+..++
T Consensus        26 ~~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~  100 (380)
T PRK06225         26 KDKEMIWMGQNTN--HLG-PHEEVREAMIRCIEEGE--YCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVM  100 (380)
T ss_pred             hcCCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCC--CCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHH
Confidence            3457888887655  455 68999999998887531  123433 35678999999998766678999999999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      +...  ..++.|++.+++|+.....+...             |...++.|.. ....|..|    .+++++.+.   ++.
T Consensus       101 ~~~~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~d----~~~l~~~~~---~~~  158 (380)
T PRK06225        101 RAFL--SPGDNAVTPDPGYLIIDNFASRF-------------GAEVIEVPIYSEECNYKLT----PELVKENMD---ENT  158 (380)
T ss_pred             HHhc--CCCCEEEEcCCCCcchHHHHHHh-------------CceEEeeccccccCCccCC----HHHHHhhcC---CCc
Confidence            8653  24577999999987543222111             2223333211 11123334    455665553   222


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc-cCCCCCEEEeecccc-CCccc
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HGVVPDIVTMAKGIG-NGIPL  332 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~-~gv~pDivt~sK~lg-~G~pi  332 (447)
                      .+.++++| ++++|.+. +.+.+++|.++|+++|+++|+||+|.+|.. + .....+. .+...++.+|||.+| .|+++
T Consensus       159 ~~v~l~~p-~NptG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~-~~~~~~~~~~~~i~~~s~SK~~g~~G~Ri  234 (380)
T PRK06225        159 RLIYLIDP-LNPLGSSY-TEEEIKEFAEIARDNDAFLLHDCTYRDFAR-E-HTLAAEYAPEHTVTSYSFSKIFGMAGLRI  234 (380)
T ss_pred             eEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHCCcEEEEehhHHHHhc-c-CCchhhcCCCCEEEEeechhhcCCcccee
Confidence            24445667 45667655 677899999999999999999999987742 2 2111111 122234568999998 79999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC--eeeEeeccee
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFL  410 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~--i~~vrg~Gl~  410 (447)
                      |++++++++++.+... ..++++.|.++++++.+.|+.  .+++.+++++..+..++.+.+..++++.  +..++..|.|
T Consensus       235 G~i~~~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  311 (380)
T PRK06225        235 GAVVATPDLIEVVKSI-VINDLGTNVIAQEAAIAGLKV--KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNM  311 (380)
T ss_pred             EEEecCHHHHHHHHHH-HhcccCCCHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeE
Confidence            9999999999887643 235778899998888888864  2345555555444444444444444321  2234567889


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++++....       ....++.+.|.++||.+.+
T Consensus       312 ~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~  339 (380)
T PRK06225        312 MVIDISEAG-------IDPEDLVEYLLERKIFVRQ  339 (380)
T ss_pred             EEEEccccc-------CCHHHHHHHHHHCCEEEcC
Confidence            998884321       0135688888999999865

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=5.3e-21  Score=192.90  Aligned_cols=298  Identities=17%  Similarity=0.201  Sum_probs=197.3

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      ++++++||.+|..  ++| .+|.+.+++.+.+...    ..|+.....+|++.++++++.+.++|++++++++++..++.
T Consensus        30 ~~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  102 (367)
T PRK02731         30 GIADIIKLASNEN--PLG-PSPKAIEAIRAAADEL----HRYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLAR  102 (367)
T ss_pred             CCCceEEecCCCC--CCC-CCHHHHHHHHHHHHhh----cCCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            6778999998775  457 5789999998887653    23554445789999999987666789999999999887776


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ..  ...++.|++.+++|.+........             |...+..|.   ..++.|    ++++++.+.   + ++.
T Consensus       103 ~l--~~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~---~~~~~~----~~~l~~~~~---~-~~~  156 (367)
T PRK02731        103 AY--LGPGDEVIYSEHGFAVYPIAAQAV-------------GAKPVEVPA---KDYGHD----LDAMLAAVT---P-RTR  156 (367)
T ss_pred             Hh--cCCCCEEEEecCCHHHHHHHHHHc-------------CCeEEEecc---cCCCCC----HHHHHHHhC---C-CCc
Confidence            43  235678999999986544332221             222222222   123334    566666664   2 345


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGI  330 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~  330 (447)
                      +|++...++++|.+.+    ++++.++|+.  +|+++|+||+|..+.+.+....++...+..++++   +|||.+| .|+
T Consensus       157 ~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~  232 (367)
T PRK02731        157 LVFIANPNNPTGTYLP----AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGL  232 (367)
T ss_pred             EEEEeCCCCCCCcCCC----HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCccc
Confidence            5555556677887775    4555555555  4999999999988765442222233333345665   6899997 799


Q ss_pred             cccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235          331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (447)
Q Consensus       331 pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~  410 (447)
                      |+|++++++++++.+....  .+|+.+++++.++.+.|+   ++++.++.++..+..++.+.+..++++. ...++.|.+
T Consensus       233 RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~g~~  306 (367)
T PRK02731        233 RVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELGL-EYIPSVGNF  306 (367)
T ss_pred             ceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCCceE
Confidence            9999999999998876432  456778888888877774   3444455555444455555555445442 223556899


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++++.+.        ....++.+.|.++||++.+
T Consensus       307 ~~i~~~~~--------~~~~~~~~~L~~~gI~v~~  333 (367)
T PRK02731        307 ILVDFDDG--------KDAAEAYQALLKRGVIVRP  333 (367)
T ss_pred             EEEECCCC--------CCHHHHHHHHHHCCEEEEe
Confidence            99987221        1145788899999999874

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.88  E-value=8.6e-21  Score=189.20  Aligned_cols=292  Identities=18%  Similarity=0.190  Sum_probs=212.0

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC-CCCceEEEcCCHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~-~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      ..+|+.+|.+  ++| ..|++.+++.+.++.+    .+|+++...++.+.+++++. ...+.|+.+|+.+|.++..+++.
T Consensus        23 ~~i~LssNen--P~g-p~~~~~~~~~~~~~~~----~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~   95 (356)
T COG0079          23 GIIKLSSNEN--PYG-PPPKVIEAIRAALDKL----NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF   95 (356)
T ss_pred             cceeecCCCC--CCC-CCHHHHHHHHHHHHhh----ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence            7899999887  677 5689999998888754    56888889999999999987 56678999999999999999876


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                      ..  +++.|++..++|.-+...+...+.           .++.++..+     |..|    ++.+.+.+..   +.-..+
T Consensus        96 ~~--~gd~vl~~~Ptf~~Y~~~a~~~g~-----------~~~~v~~~~-----~~~d----~~~~~~~~~~---~~~lv~  150 (356)
T COG0079          96 VE--PGDTVLIPEPTFSMYEIAAQLAGA-----------EVVKVPLKE-----FRLD----LDAILAAIRD---KTKLVF  150 (356)
T ss_pred             hc--CCCEEEEcCCChHHHHHHHHhcCC-----------eEEEecccc-----cccC----HHHHHHhhhc---CCCEEE
Confidence            64  457999999999655554443321           233333221     4344    3344433332   234578


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGA  334 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~piga  334 (447)
                      |++|.+.+|..+  +.+.++++.+.|.+ +++||+||+|..|...  ..  .....-.++++   ||||++| .|+|+|+
T Consensus       151 i~nPNNPTG~~~--~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~--~~--~~l~~~~~nlivlRTfSKa~gLAGlRlGy  223 (356)
T COG0079         151 LCNPNNPTGTLL--PREELRALLEALPE-GGLVVIDEAYIEFSPE--SS--LELLKYPPNLIVLRTFSKAFGLAGLRVGY  223 (356)
T ss_pred             EeCCCCCCCCCC--CHHHHHHHHHhCCC-CcEEEEeCchhhcCCc--hh--hhhccCCCCEEEEEecHHhhhcchhceee
Confidence            888988776443  45556777777767 9999999999999651  11  22222233355   7999999 7999999


Q ss_pred             cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeecceeEEE
Q 013235          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLLGV  413 (447)
Q Consensus       335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~Gl~~gi  413 (447)
                      +++++++++.+...  -..|+.|.++.++|.++|+   +.++++...+....-+++|.+..++++ +. -.++.++|+.+
T Consensus       224 ~ia~~~~i~~l~~v--r~p~~v~~~a~~aa~aal~---~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~aNFvlv  297 (356)
T COG0079         224 AIANPELIAALNKV--RPPFNVSSPALAAAIAALR---DADYLEESVERIREERERLYAALKALG-LFGVFPSQANFVLV  297 (356)
T ss_pred             ccCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcEEEE
Confidence            99999999999753  3778899999999999886   335666666666666777777666666 33 45777999988


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+        .. +..+.+.|+++||+++.
T Consensus       298 ~~~~--------~~-~~~l~~~L~~~giivR~  320 (356)
T COG0079         298 RVPD--------AE-AAALAEALLKKGILVRD  320 (356)
T ss_pred             ECCC--------cc-HHHHHHHHHHCCEEEEe
Confidence            8732        22 45789999999999985

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.88  E-value=7.4e-21  Score=182.65  Aligned_cols=295  Identities=17%  Similarity=0.189  Sum_probs=214.9

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~A  174 (447)
                      ++-=|++|.+. .++ .||+|.+|+.+.+++.+.+..     .+.+....+|+.+|+++..  .+..++++|..-||+..
T Consensus       172 ~VtVWCSNDYL-gms-~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--K~aALlFsSCfVANDst  247 (570)
T KOG1360|consen  172 KVTVWCSNDYL-GMS-RHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--KEAALLFSSCFVANDST  247 (570)
T ss_pred             ceEEEecCccc-ccc-CChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--CcceeeeeeeeeccchH
Confidence            34444555442 233 589999999999999754221     2456677899999999874  45667789999999998


Q ss_pred             HHH-HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          175 IMM-ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       175 ik~-ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      +-. ++..+  .-+|.-+.+.|.+....+..++.+.+.|.+                   ||    +++|++++++..+.
T Consensus       248 LftLak~lp--gcei~SD~gNHASMI~GIrns~v~K~IFrH-------------------ND----~~hL~~lL~~~~~s  302 (570)
T KOG1360|consen  248 LFTLAKKLP--GCEIFSDEGNHASMIQGIRNSRVPKHIFRH-------------------ND----LDHLEQLLQSSPKS  302 (570)
T ss_pred             HHHHHHHCC--CcEEeccccchHHHHHHhhhcCCcceeecc-------------------CC----HHHHHHHHHhCCCC
Confidence            864 44432  345666788898887777666655544433                   55    78899999987777


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCC--CCCEE--EeeccccC
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGV--VPDIV--TMAKGIGN  328 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv--~pDiv--t~sK~lg~  328 (447)
                      .+..|-+|.+.++.|.++|    |++|+++++|||++-.+|||+. .|-.|++..+. |+-|+  +.||+  |+||++|.
T Consensus       303 vPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc  377 (570)
T KOG1360|consen  303 VPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC  377 (570)
T ss_pred             CCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhccc
Confidence            8889999999999999999    9999999999999999999996 66667655555 67777  56888  69999994


Q ss_pred             -CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          329 -GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       329 -G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                       |   ||+..+..++|++...  .+..|.+..|..++.|++++++++.+   .+...-++.-+++++.|.++  .+|.+.
T Consensus       378 VG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~--GiPVi~  452 (570)
T KOG1360|consen  378 VG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL--GIPVIP  452 (570)
T ss_pred             cc---ceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc--CCcccC
Confidence             4   5799999999998763  36688889999999999999998754   24444555667777777765  333221


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceee
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFF  444 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~  444 (447)
                         .-.-++.+.+        .+.....++.+.|+ +.||+|.
T Consensus       453 ---~pSHIiPv~v--------gda~l~~~~sd~Li~~h~iYvQ  484 (570)
T KOG1360|consen  453 ---NPSHIIPVRV--------GDAALAKQASDILISKHNIYVQ  484 (570)
T ss_pred             ---CCcceeeeec--------cCHHHHHHHHHHHHHhcCeEEE
Confidence               1122333333        23445677888777 4689885

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=6.3e-21  Score=192.28  Aligned_cols=297  Identities=12%  Similarity=0.115  Sum_probs=204.1

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      +++..||+..|..  ++| .+|.+.+++.+.+...    ..|+.....+|.+.|++++..+.++|+++++++|++..+++
T Consensus        27 ~~~~~i~l~~nen--~~~-~~~~v~~a~~~~~~~~----~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~   99 (366)
T PRK01533         27 GDHSFVKLASNEN--PFG-CSPRVLDELQKSWLDH----ALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISR   99 (366)
T ss_pred             CCCceEEeCCCCC--CCC-CCHHHHHHHHHHHHhc----CcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            3567899988776  667 6789999998876553    24666677889999999987778899999999999999988


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ...  .+++.|++.+++|.+....+...             |...+..|..   .++.|    .+++++.+..   +...
T Consensus       100 ~l~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~---~~~~d----~~~l~~~~~~---~~~~  154 (366)
T PRK01533        100 AVL--KAGDNIVTAGATFPQYRHHAIIE-------------GCEVKEVALN---NGVYD----LDEISSVVDN---DTKI  154 (366)
T ss_pred             Hhc--CCCCEEEEcCCcHHHHHHHHHHc-------------CCEEEEeecC---CCCcC----HHHHHHHhCc---CCcE
Confidence            543  25578999999997666544322             2222222221   12233    5667666642   2334


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      .+|+.| ++++|.+. +.+.+++|.++|++++ ++|+||+|..|...+...-.....+-.+.++   +|||.+| .|+++
T Consensus       155 v~i~~P-~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi  231 (366)
T PRK01533        155 VWICNP-NNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRV  231 (366)
T ss_pred             EEEeCC-CCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHH
Confidence            555556 56677766 6777888888888876 6778999988753321111111122223444   5899999 89999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g  412 (447)
                      ||+++++++++.+....  .+|+.|.+++.++.++|+   ++++.+++++..+..++.+.++.+.++ +.-.++.|+|++
T Consensus       232 G~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g-~~~~~~~~nf~~  305 (366)
T PRK01533        232 GYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENE-IPFYQSQTNFIF  305 (366)
T ss_pred             hHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCcCcEEE
Confidence            99999999998886532  468889999999988884   455665555555555666666655554 233466799999


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++. +          ..++.+.|+++||+|++
T Consensus       306 ~~~~-~----------~~~~~~~l~~~GI~Vr~  327 (366)
T PRK01533        306 LPVE-N----------GGEIYEACAHAGFIIRP  327 (366)
T ss_pred             EeCC-C----------HHHHHHHHHHCCcEEcc
Confidence            9872 1          24688999999999974

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.87  E-value=5.5e-20  Score=170.49  Aligned_cols=327  Identities=16%  Similarity=0.166  Sum_probs=219.3

Q ss_pred             HHHHHHHhhhcCCcccc-----ccCCCeEEEeecccEEEecCC--CeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcc
Q 013235           61 DEILAKRKTFLSPSLFH-----LYSKPLNVVDGKMQYLFDENG--RRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~-----~~~~p~~~~~g~G~~l~d~dG--~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~  132 (447)
                      ++.+.+.+..+...+..     -|+.--++++.+|..+. ++|  +.+|.|++|.+   ||. +||+|.+|.+++++.++
T Consensus        23 q~~~~q~r~~l~~~legi~gagtwk~erVi~s~q~p~i~-v~G~~k~ilnFcaNnY---LGLsshPeii~a~~~aleeyG   98 (417)
T KOG1359|consen   23 QEAIAQLRAILGDELEGIKGAGTWKRERVITSRQGPTIQ-VKGSDKKILNFCANNY---LGLSSHPEIINAGQKALEEYG   98 (417)
T ss_pred             HHHHHHHHHhccCccceecccccceeeeEEeecccceEE-Eeccccceeeeccccc---ccccCChHHHHHHHHHHHHhC
Confidence            44555656655433211     24556788888998874 565  57999997654   555 59999999999999875


Q ss_pred             cccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCC
Q 013235          133 HSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ  207 (447)
Q Consensus       133 ~~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~  207 (447)
                      -...     .++...+..|+.+|+++.  +.+..++++|+.+||..++....  ++ ++.|.-+.-.|.+......+.. 
T Consensus        99 aGlssvrfIcGtq~iHk~LE~kiAqfh--~rED~ilypscfdANag~feail--~p-edAvfSDeLNhASIIdGirLck-  172 (417)
T KOG1359|consen   99 AGLSSVRFICGTQDIHKLLESKIAQFH--GREDTILYPSCFDANAGAFEAIL--TP-EDAVFSDELNHASIIDGIRLCK-  172 (417)
T ss_pred             CCccceeEEecchHHHHHHHHHHHHHh--CCCceEEeccccccchHHHHHhc--Ch-hhhhhccccccchhhhhhHHHh-
Confidence            4321     245778889999999987  34667899999999999887542  23 3333345555655554443331 


Q ss_pred             CCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       208 ~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                                         .|+.   .|    ..+++.-+....+-+...|+.|.+.++.|.+.|    |++|.+|+++|
T Consensus       173 -------------------ry~h---~d----v~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kY  222 (417)
T KOG1359|consen  173 -------------------RYRH---VD----VFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKY  222 (417)
T ss_pred             -------------------hhcc---ch----hHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhc
Confidence                               1111   12    233443333222347889999999999999999    99999999999


Q ss_pred             CCEEEEecccc-C-ccccCCCcccccccCC--CCCEE--EeeccccCCccccccccCHHHHHhhcCCccc--ccCCCChH
Q 013235          288 GGLCIADEVQA-G-FARTGSHFWGFEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPV  359 (447)
Q Consensus       288 g~llI~DEv~t-G-fgr~G~~~~~~~~~gv--~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~~~--~T~~~np~  359 (447)
                      |.|+++||.+. | ||.|| . ..-|.+|+  .+||+  |+||++||. --|++.+++++++.+.++...  .+-+..|.
T Consensus       223 gaLlfiDecHaTgf~G~tG-r-Gt~E~~~vm~~vdiinsTLgKAlGga-~GGyttgp~~li~llrqr~RpylFSnslppa  299 (417)
T KOG1359|consen  223 GALLFIDECHATGFFGETG-R-GTAEEFGVMGDVDIINSTLGKALGGA-SGGYTTGPKPLISLLRQRSRPYLFSNSLPPA  299 (417)
T ss_pred             CcEEEEeecccceeecCCC-C-ChHHHhCCCCcceehhhhhhhhhcCC-CCCCccCChhHHHHHHhcCCceeecCCCChh
Confidence            99999999974 4 36666 2 23477886  67877  899999841 126799999999999876433  33334455


Q ss_pred             HHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 013235          360 CTAAGHAVLKVI-QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (447)
Q Consensus       360 a~aaala~L~~i-~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~  437 (447)
                      ....+.++++.+ .........+.+-+++++..+..  .+.    +.|. -.++.+-+        .+...+.++.++|+
T Consensus       300 vV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a--Gft----Isg~~hPI~pv~l--------Gda~lA~~~ad~lL  365 (417)
T KOG1359|consen  300 VVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA--GFT----ISGASHPICPVML--------GDARLASKMADELL  365 (417)
T ss_pred             hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--Cce----ecCCCCCccceec--------ccHHHHHHHHHHHH
Confidence            556667777765 35567777888888888766553  221    1111 12233333        23457889999999


Q ss_pred             hCCceee
Q 013235          438 GICALFF  444 (447)
Q Consensus       438 ~~Gvlv~  444 (447)
                      ++|++|-
T Consensus       366 k~Gi~Vi  372 (417)
T KOG1359|consen  366 KRGIYVI  372 (417)
T ss_pred             hcCceEE
Confidence            9999984

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=9.8e-21  Score=191.20  Aligned_cols=295  Identities=16%  Similarity=0.147  Sum_probs=199.2

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      +.+|++..|..  .+| .+|.+.+|+.+.+...    ..|+.+...+|.++|++++..+.++|+++++.++++..+++..
T Consensus        32 ~~~~~l~~~~~--~~~-~~~~~~~a~~~~~~~~----~~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~  104 (369)
T PRK08153         32 PFRARIGANES--GFG-PSPSVIAAMREAAAEI----WKYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLY  104 (369)
T ss_pred             cceeEecCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence            35678887765  566 6899999998876542    2345445678999999998766678999999999999988754


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                      .  ..++.|++.+++|.+....+...             |...+..|.  +. ...|    .+++++.+.   .+++.++
T Consensus       105 ~--~~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~vp~--~~-~~~~----~~~l~~~~~---~~~~~~i  159 (369)
T PRK08153        105 V--EPGDPVVTSLGAYPTFNYHVAGF-------------GGRLVTVPY--RD-DRED----LDALLDAAR---RENAPLV  159 (369)
T ss_pred             c--CCCCEEEECCCcchHHHHHHHHc-------------CCeEEEeeC--CC-CCCC----HHHHHHHhc---ccCCcEE
Confidence            3  25678889999997665433222             222222221  11 1122    344443332   1233444


Q ss_pred             -EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccc
Q 013235          259 -LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLG  333 (447)
Q Consensus       259 -i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig  333 (447)
                       +++|.++ +|.+. +.+.+++|.++|++ +++||+||+|..|++.| ....+.  ...|+++   +|||.+| .|+|+|
T Consensus       160 ~l~~P~NP-tG~~~-~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~-~~~~~~--~~~~~~i~~~SfSK~~g~~GlRiG  233 (369)
T PRK08153        160 YLANPDNP-MGSWH-PAADIVAFIEALPE-TTLLVLDEAYCETAPAG-AAPPID--TDDPNVIRMRTFSKAYGLAGARVG  233 (369)
T ss_pred             EEeCCCCC-CCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhhcCcc-cchhhh--hcCCCEEEEecchHhccCcchhee
Confidence             5577544 46655 56667777777764 99999999999987655 232221  1235544   6999998 899999


Q ss_pred             ccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       334 av~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      |+++++++++.+....  .+|+.|+++++++.+.|+   ++++.++.++..+..++.+.+..+++++ ..++..|.++.+
T Consensus       234 ~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~~p~~~~f~~~  307 (369)
T PRK08153        234 YAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGL-TPLPSATNFVAI  307 (369)
T ss_pred             eeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCcCcEEEE
Confidence            9999999998876432  457889999999998885   4556666777677777777666665553 234567888877


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++..+       ...+.++.++|+++||+++
T Consensus       308 ~~~~~-------~~~a~~l~~~l~~~Gi~v~  331 (369)
T PRK08153        308 DCGRD-------GAFARAVLDGLIARDIFVR  331 (369)
T ss_pred             ECCCC-------cccHHHHHHHHHHCCeEEe
Confidence            76311       1235679999999999995

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.87  E-value=5.4e-20  Score=183.84  Aligned_cols=297  Identities=19%  Similarity=0.216  Sum_probs=194.4

Q ss_pred             CeEEEecCCcccccCCCC-CHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANE  172 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e  172 (447)
                      +.||.|+++.   .|||. ||+|.+|+++.+++..+...     ....+...++.+.|+++++.  +..++++||++++.
T Consensus         1 ~~~~~~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~iv~~sg~~a~~   75 (349)
T cd06454           1 KKVLNFCSND---YLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK--EAALVFSSGYAAND   75 (349)
T ss_pred             CCceecccCC---ccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC--CCEEEeccHHHHHH
Confidence            4688888654   68998 99999999999987543111     13467778999999999864  34677899999999


Q ss_pred             HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-
Q 013235          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-  251 (447)
Q Consensus       173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-  251 (447)
                      .+++...  .+++.|++.++. |..........            |+.....+.       .|    .+++++++.... 
T Consensus        76 ~~~~~~~--~~gd~Vl~~~~~-~~~~~~~~~~~------------g~~~~~~~~-------~~----~~~le~~i~~~~~  129 (349)
T cd06454          76 GVLSTLA--GKGDLIISDSLN-HASIIDGIRLS------------GAKKRIFKH-------ND----MEDLEKLLREARR  129 (349)
T ss_pred             HHHHHhc--CCCCEEEEehhh-hHHHHHHHHHc------------CCceEEecC-------CC----HHHHHHHHHHhhc
Confidence            8886543  245667766554 44433222211            222222221       13    356677765421 


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccC---CCCCEE--Eeeccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG---VVPDIV--TMAKGI  326 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~g---v~pDiv--t~sK~l  326 (447)
                      +.++++++++++++++|...+    +++|.++|+++|+++|+||+|. +|..+.........+   ..+|++  +++|.+
T Consensus       130 ~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  204 (349)
T cd06454         130 PYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAF  204 (349)
T ss_pred             cCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhh
Confidence            246789999999999998765    8999999999999999999985 333321101111111   235766  588999


Q ss_pred             cCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          327 GNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       327 g~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      +.  +.|+++.++++++.+....  +..+...++..++++.++|+.+++ ++..+++.++.+++.+.|.++  .+..+  
T Consensus       205 ~~--~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~--  278 (349)
T cd06454         205 GA--VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL--GFPVG--  278 (349)
T ss_pred             cc--cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--CCccc--
Confidence            75  4478889999887765432  223345778889899999988765 566788888888888888765  22222  


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                       ...+.++...+..       +.....++.+.|+++||.+..
T Consensus       279 -~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~gI~~~~  312 (349)
T cd06454         279 -GSPSHIIPPLIGD-------DPAKAVAFSDALLERGIYVQA  312 (349)
T ss_pred             -CCCCCcEEEEeCC-------ChHHHHHHHHHHHhCCceEEE
Confidence             1223332222221       112356789999999998853

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK07682 hypothetical protein; Validated

Probab=99.87  E-value=6e-20  Score=186.03  Aligned_cols=307  Identities=11%  Similarity=0.125  Sum_probs=188.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhc--ccccccccchHHHHHHHHHHHhCC--CCC-ceEEEcCCHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--QHSTVLYLNHAIADFAEALASKMP--GNL-KVVFFTNSGTEANELA  174 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~--~~~~~~~~~~~~~elae~L~~~~~--~~~-~~v~~~~sGseA~e~A  174 (447)
                      ..|+|..|...  ++ .++.+.+++.+.++..  .+....+..+...++++.+.+.++  ... ++|++++++++|++.+
T Consensus        21 ~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~   97 (378)
T PRK07682         21 GVISLGVGEPD--FV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA   97 (378)
T ss_pred             CeEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence            46888877663  44 4667888888877642  111112223344455555544322  223 3799999999999999


Q ss_pred             HHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      ++...  .+++.|++.+++|++....+...+             ...++.+......|+.|    .+++++.+..    +
T Consensus        98 ~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~~~~----~  154 (378)
T PRK07682         98 MRAII--NPGDEVLIVEPSFVSYAPLVTLAG-------------GVPVPVATTLENEFKVQ----PAQIEAAITA----K  154 (378)
T ss_pred             HHHhC--CCCCEEEEeCCCchhhHHHHHHcC-------------CEEEEeecCCccCCCCC----HHHHHhhcCc----c
Confidence            87553  356889999999986554333221             12222221111123334    5666665532    3


Q ss_pred             eEEE-EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCC---EEEeecccc-C
Q 013235          255 VAGF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPD---IVTMAKGIG-N  328 (447)
Q Consensus       255 ~aav-i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pD---ivt~sK~lg-~  328 (447)
                      +.++ ++.| ++++|.+. +++.+++|.++|++|++++|+||+|..|.+.+ ....+ ...+..+.   +.+|||.++ .
T Consensus       155 ~~~v~~~~p-~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~  231 (378)
T PRK07682        155 TKAILLCSP-NNPTGAVL-NKSELEEIAVIVEKHDLIVLSDEIYAELTYDE-AYTSFASIKGMRERTILISGFSKGFAMT  231 (378)
T ss_pred             cEEEEEECC-CCCcCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhcccCC-CCCChhhcccccCCEEEEecCcccccCh
Confidence            4445 5555 66777654 78889999999999999999999999987655 22222 22222223   336999998 7


Q ss_pred             CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee
Q 013235          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (447)
Q Consensus       329 G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg  406 (447)
                      |+|+|++++++++++.+.......+++.+++++.++.+.|+.-+.  +++.+..++..+++.+.|+++    +.-...+.
T Consensus       232 GlR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~p~  307 (378)
T PRK07682        232 GWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI----GLTCHVPG  307 (378)
T ss_pred             hhhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC----CCccCCCC
Confidence            999999999999999886543345567788888888888853111  123344455555555555543    32111233


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      .|+++++.+....       ....++++.|+ ++||++.++
T Consensus       308 g~~~~~~~~~~~~-------~~~~~~~~~ll~~~gv~v~pg  341 (378)
T PRK07682        308 GAFYAFPSISSTG-------LSSEEFAEQLLLEEKVAVVPG  341 (378)
T ss_pred             eeEEEEEeccCCC-------CCHHHHHHHHHHhCCEEEcCc
Confidence            4566766663211       01356788876 689998753

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=3.1e-20  Score=186.72  Aligned_cols=296  Identities=18%  Similarity=0.144  Sum_probs=190.5

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      +|..+|||..|..  .++ .+|.+.+++.+.++..    ..|+.....+|.+.++++++...++|++++++++++..+++
T Consensus        28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~----~~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~  100 (357)
T PRK14809         28 DPDDLVKLSSNEN--PHG-PSPAAVEAIREAAERV----HSYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLAR  100 (357)
T ss_pred             CccceeEecCCCC--CCC-CCHHHHHHHHHHHhhh----hcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            4567999988766  456 6788999988776543    23555556789999999987777899999999999999887


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ...  ..++.|++.+++|.......... +          .++..++.+  ....|..+    .+++++...     ++.
T Consensus       101 ~~~--~~gd~V~v~~P~y~~~~~~~~~~-g----------~~~~~~~l~--~~~~~~~~----~~~~~~~~~-----~~k  156 (357)
T PRK14809        101 AML--DPGDTVLVPDPGFAYYGMSARYH-H----------GEVREYPVS--KADDFEQT----ADTVLDAYD-----GER  156 (357)
T ss_pred             Hhc--CCCCEEEEeCCChHHHHHHHHHc-C----------CeEEEEecc--cCcCCCcC----HHHHHHhhc-----CCc
Confidence            542  25678999999986443322111 1          122233321  11123223    233433321     223


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-CCcccccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pigav  335 (447)
                      ++++...++++|.+. +.+.+++|.++|++ ++++|+||+|..|...++.....+..+-..-+-+|||.++ .|+|+||+
T Consensus       157 ~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~  234 (357)
T PRK14809        157 IVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYA  234 (357)
T ss_pred             EEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheee
Confidence            444445567777776 55667777777765 7899999999988654421111122222222347999998 79999999


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEE
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel  415 (447)
                      ++++++++.+...  ..+++.|++++.++.+.|+   ++++.++.++.-+..++.+.+..+..    ..+..|+++++++
T Consensus       235 ~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~g~f~~~~~  305 (357)
T PRK14809        235 VVPEEWADAYARV--NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAP----TWESAGNFVLAEV  305 (357)
T ss_pred             ecCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCc----cCCCCCCEEEEEC
Confidence            9999999888643  2567888998888888774   34444444433333344444433222    1356789999887


Q ss_pred             eeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          416 VTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       416 ~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+           ..++.+.|.++||++.+
T Consensus       306 ~~-----------~~~~~~~l~~~gv~v~~  324 (357)
T PRK14809        306 GD-----------ASAVAEAAQERGVIVRD  324 (357)
T ss_pred             CC-----------HHHHHHHHHHCCEEEEE
Confidence            21           34678888999999875

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.86  E-value=1.2e-19  Score=182.15  Aligned_cols=297  Identities=15%  Similarity=0.114  Sum_probs=190.8

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      ..++||..|..  .+| .+|.+.+++.+.+..+    ..|+.+...+|.++++++++.+.++|++++++++++..+++..
T Consensus        19 ~~~~~l~~~~~--~~~-~p~~~~~a~~~~~~~~----~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~   91 (354)
T PRK06358         19 NMILDFSANIN--PLG-VPESLKQAITENLDKL----VEYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT   91 (354)
T ss_pred             cceEEecCCCC--CCC-CCHHHHHHHHHHHHhh----hcCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence            35799987664  456 4789999998876543    2356556778999999998777889999999999999998753


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                          ..+.|++.+++|+.....+...             |...+..|......|..| +    ++.+.+.   .+....+
T Consensus        92 ----~~~~v~i~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d-~----~~~~~~~---~~~~~v~  146 (354)
T PRK06358         92 ----KPKKVLILAPTFAEYERALKAF-------------DAEIEYAELTEETNFAAN-E----IVLEEIK---EEIDLVF  146 (354)
T ss_pred             ----CCCcEEEecCChHHHHHHHHHc-------------CCeeEEEeCccccCCCcc-H----HHHHhhc---cCCCEEE
Confidence                2357999999998665444222             222222222111122233 1    2222222   1223345


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGA  334 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~piga  334 (447)
                      ++.| ++++|.+. +.+.+++|.++|++||+++|+||+|..|...+...-.....+..+.++   +|||.++ .|+|+||
T Consensus       147 ~~~P-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~  224 (354)
T PRK06358        147 LCNP-NNPTGQLI-SKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGY  224 (354)
T ss_pred             EeCC-CCCCCCcc-CHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhhee
Confidence            7788 56667654 788899999999999999999999998865442111112222234444   6999999 8999999


Q ss_pred             cccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          335 VVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       335 v~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      ++++ +++++.+....  ..|+.+.++..++.+.|+   ++++.++..+.-+.-++.+.+..++++.+.-.+..|.++++
T Consensus       225 lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~  299 (354)
T PRK06358        225 GLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIFF  299 (354)
T ss_pred             eecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEEE
Confidence            9984 67777775432  357778888888888774   23332222222222233333333333333334566778888


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+           ..++.+.|+++||++.+
T Consensus       300 ~~~~-----------~~~~~~~l~~~gI~v~~  320 (354)
T PRK06358        300 KLEK-----------PIDLRKELLKKGILIRS  320 (354)
T ss_pred             EcCc-----------hHHHHHHHHHCCeEEEE
Confidence            7731           14688999999999875

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.86  E-value=2e-19  Score=182.26  Aligned_cols=307  Identities=16%  Similarity=0.126  Sum_probs=190.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e~Ai  175 (447)
                      ..|||..|...  ++ .++.+.+++.+.+....  +....+..+....+++.+.+.++  ...+++++++|+++|+..++
T Consensus        25 ~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~  101 (382)
T PRK06108         25 GVLPLWFGESD--LP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA  101 (382)
T ss_pred             CeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence            46898887764  34 46899999888776531  11111223444555555555444  45678999999999999998


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCc-CCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY-RGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~-~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      +....  .++.|++.+++|......+...             |+..+..|... ...|..|    .+++++.+.   + +
T Consensus       102 ~~l~~--~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~d----~~~l~~~~~---~-~  158 (382)
T PRK06108        102 QALVG--PGDEVVAVTPLWPNLVAAPKIL-------------GARVVCVPLDFGGGGWTLD----LDRLLAAIT---P-R  158 (382)
T ss_pred             HHhcC--CCCEEEEeCCCccchHHHHHHC-------------CCEEEEeeCCCCCCCccCC----HHHHHHhcC---c-c
Confidence            85532  5678999999986554332211             33333322211 1123234    456666553   2 3


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcccc-CCCcccc-cccCCCCCEE---Eeecccc-C
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-GSHFWGF-EAHGVVPDIV---TMAKGIG-N  328 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~-G~~~~~~-~~~gv~pDiv---t~sK~lg-~  328 (447)
                      +.++++...++++|.+. +.+.+++|.++|+++|+++|+||+|.+|... +.....+ +..+..+.++   +|||.++ .
T Consensus       159 ~~~i~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~  237 (382)
T PRK06108        159 TRALFINSPNNPTGWTA-SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMT  237 (382)
T ss_pred             ceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCc
Confidence            45555555567778765 7889999999999999999999999988543 2111111 1111122233   6999997 6


Q ss_pred             CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee
Q 013235          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (447)
Q Consensus       329 G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg  406 (447)
                      |+|+|++++++++++.+.......+++.+++.+.++.+.|+.-++  +++.+++++..+++.+.|+++    +.+..+..
T Consensus       238 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~p  313 (382)
T PRK06108        238 GWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRAL----PGVEVAKP  313 (382)
T ss_pred             ccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC----CCCcccCC
Confidence            999999999999988876543345667788988888888853211  233444555555555555443    22222333


Q ss_pred             -cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          407 -RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       407 -~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                       .|+++++++...        ....++++.|+ ++||++.+
T Consensus       314 ~~g~~~~~~l~~~--------~~~~~~~~~ll~~~gV~v~p  346 (382)
T PRK06108        314 DGAMYAFFRIPGV--------TDSLALAKRLVDEAGLGLAP  346 (382)
T ss_pred             CeeEEEEEeCCCC--------CCHHHHHHHHHHhCCEEEeC
Confidence             366777777321        01356888875 57999864

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.86  E-value=8.8e-20  Score=186.20  Aligned_cols=308  Identities=16%  Similarity=0.125  Sum_probs=188.0

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC------CCCC-ceEEEcCCHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNL-KVVFFTNSGTEA  170 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~------~~~~-~~v~~~~sGseA  170 (447)
                      |..+|||..|..  .++ .++.+.+++.+.+.....  ..|+.....+|.+.|++++      +.+. ++|++++++++|
T Consensus        31 ~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~--~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a  105 (399)
T PRK07681         31 GHKMIDLSIGNP--DMP-PADFVREEMVHTANQKES--YGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG  105 (399)
T ss_pred             CCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhcccc--CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence            567899988765  344 468888888876654211  1122233444555555443      2344 689999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..+++...  ..++.|++.+++|.+....+...             |+..+++|....+.|..|    .+++++.+.  
T Consensus       106 l~~~~~~~~--~~Gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~~~~~~d----~~~l~~~~~--  164 (399)
T PRK07681        106 LVHLPMVYA--NPGDIILVPDPGYTAYETGIQMA-------------GATSYYMPLKKENDFLPD----LELIPEEIA--  164 (399)
T ss_pred             HHHHHHHhC--CCCCEEEECCCCccchHHHHHhc-------------CCEEEEEecCCCCCCcCC----HHHHHHhcc--
Confidence            999887543  25678999999997766544322             333333333222223334    455555443  


Q ss_pred             CCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCC---CCCEEEeecc
Q 013235          251 TSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGV---VPDIVTMAKG  325 (447)
Q Consensus       251 ~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv---~pDivt~sK~  325 (447)
                       + ++.++++. | ++++|.+. +++-+++|.++|++||+++|+||+|..|-..+...-.+ +..+.   ...+-+|||.
T Consensus       165 -~-~~k~v~l~~P-~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  240 (399)
T PRK07681        165 -D-KAKMMILNFP-GNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKS  240 (399)
T ss_pred             -c-cceEEEEeCC-CCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccc
Confidence             2 34445544 7 56677665 78889999999999999999999999885443111111 11111   1123379999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                      ++ .|+++||+++++++++.+.......+++.+.+++.++.+.|+.-  +++.++.++.-+.-++.|.+..+++++....
T Consensus       241 ~~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  318 (399)
T PRK07681        241 YSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG--AAFCEKNRGIYQERRDTLVDGFRTFGWNVDK  318 (399)
T ss_pred             cCCccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence            98 89999999999999988865433456777888888887777521  2233222222222223333333333321112


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      +..|+++++++.+.        ....++++.|++ +||++.+
T Consensus       319 p~~g~f~~~~l~~~--------~~~~~~~~~l~~~~gv~v~p  352 (399)
T PRK07681        319 PAGSMFVWAEIPKG--------WTSLSFAYALMDRANVVVTP  352 (399)
T ss_pred             CCeeeEEEEECCCC--------CCHHHHHHHHHHhCCEEEeC
Confidence            34588999887421        113568888887 8999875

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.86  E-value=3.2e-19  Score=180.76  Aligned_cols=306  Identities=17%  Similarity=0.156  Sum_probs=194.9

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH----hCC--CCC-ceEEEcCCHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALAS----KMP--GNL-KVVFFTNSGTEAN  171 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~----~~~--~~~-~~v~~~~sGseA~  171 (447)
                      ...||+..|....   ..++.+.+++.+++.....  ..+++....+|++.+++    ..+  ... +.|+.+++++||+
T Consensus        28 ~~vi~l~iG~Pd~---~~p~~i~~a~~~a~~~~~~--~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al  102 (393)
T COG0436          28 EDVIDLSIGEPDF---PTPEHIIEAAIEALEEGGT--HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL  102 (393)
T ss_pred             CCEEEeCCCCCCC---CCCHHHHHHHHHHHhcccC--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence            4688887776533   2678899999999887631  12234444555555554    433  123 3499999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcC-CCCCCChHHHHHHHHHHHHcc
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~  250 (447)
                      ..++.....  ++++||+.+++|-.+.......++             ..+..|.... ..|.-|    .++|++.+.. 
T Consensus       103 ~~~~~a~~~--pGDeVlip~P~Y~~y~~~~~~~gg-------------~~v~v~l~~~~~~f~~d----~~~l~~~i~~-  162 (393)
T COG0436         103 FLAFLALLN--PGDEVLIPDPGYPSYEAAVKLAGG-------------KPVPVPLDEEENGFKPD----LEDLEAAITP-  162 (393)
T ss_pred             HHHHHHhcC--CCCEEEEeCCCCcCHHHHHHhcCC-------------EEEEEeCCcCccCCcCC----HHHHHhhcCc-
Confidence            999975443  678899999999766655444332             2222221111 244445    5677777653 


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-CcccccccCC---CCCEEEeeccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAHGV---VPDIVTMAKGI  326 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~gv---~pDivt~sK~l  326 (447)
                         ++.++++..-++++|.+ +++++|++|.++|++||+++|.||+|.+|...|. +....+..+.   ..-+-.|||.+
T Consensus       163 ---ktk~i~ln~P~NPTGav-~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~  238 (393)
T COG0436         163 ---KTKAIILNSPNNPTGAV-YSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY  238 (393)
T ss_pred             ---cceEEEEeCCCCCcCcC-CCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccc
Confidence               44455554444445554 4899999999999999999999999999988873 1111222221   11222589999


Q ss_pred             c-CCccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCC
Q 013235          327 G-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       327 g-~G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      + .|||+||++++ +++++.+.......+++.+.+++.++.++|+.-++.+..    +..+++.+.+.+.|.++    +.
T Consensus       239 ~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~----~g  314 (393)
T COG0436         239 GMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEI----GG  314 (393)
T ss_pred             cccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence            9 79999999999 888887765445567788999999999999743211122    33444445555544443    32


Q ss_pred             eeeEe-e-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          401 IGDVR-G-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       401 i~~vr-g-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      +..+. . .++++.+.+...        ....+++.+|+++ ||.+.+
T Consensus       315 ~~~~~~p~Ga~Y~~~~i~~~--------~d~~~f~~~Ll~~~gV~v~P  354 (393)
T COG0436         315 LSVVKPPEGAFYLFPKIPEL--------LDSEEFAKKLLEEAGVAVVP  354 (393)
T ss_pred             eeeccCCCeeEEEEeecCCC--------CCHHHHHHHHHHhCCEEEec
Confidence            33333 3 345555555321        1135688888765 798865

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.85  E-value=3.2e-19  Score=181.42  Aligned_cols=313  Identities=12%  Similarity=0.046  Sum_probs=185.0

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----C--CCCc-eEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK-VVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~~-~v~~~~sGs  168 (447)
                      +|+.++||..|..  .++ .++.+.+++.+.+....  ...|. .....+|.+.|++++    +  .+.+ +|+++++++
T Consensus        28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~  102 (388)
T PRK07366         28 AGKELIDLSLGSS--DLP-APAHALEAIAQSLHDPS--THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQ  102 (388)
T ss_pred             cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcc--cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcH
Confidence            4667889888765  345 47899999988765321  12232 233455666666554    2  3445 699999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|+..+++...  .+++.|++.+++|.+....+...             |...++.|....+.|..|    ++++++.+.
T Consensus       103 ~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~  163 (388)
T PRK07366        103 EGTAHLPLAVL--NPGDFALLLDPGYPSHAGGVYLA-------------GGQIYPMPLRAENDFLPV----FADIPTEVL  163 (388)
T ss_pred             HHHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhc-------------CCEEEEEECCCccCCCCC----HHHHHHhhc
Confidence            99999887543  25688999999998776544432             233333322212223223    344444332


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC-cccccccCCC-CCEE---Eee
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWGFEAHGVV-PDIV---TMA  323 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~-~~~~~~~gv~-pDiv---t~s  323 (447)
                         + ++.++++.+.++++|.+. +.+.+++|.++|++||++||.||+|..|...+.. ...+...+-. +.++   +||
T Consensus       164 ---~-~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfS  238 (388)
T PRK07366        164 ---A-QARLMVLSYPHNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLS  238 (388)
T ss_pred             ---c-cceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecc
Confidence               2 234455555567777765 7888999999999999999999999988544421 1111111111 2222   799


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      |.+| .|+++||+++++++++.+........++..+..+.++++.|.  +++++.++.++.-+.-++.+.+..++++...
T Consensus       239 K~~g~~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~  316 (388)
T PRK07366        239 KSYNMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFINALHQIGWPV  316 (388)
T ss_pred             cccCCcchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            9997 899999999999999887653322233332333445555553  2233333333222222333333333444322


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeecc
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFSQ  446 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~~  446 (447)
                      ..+..|+++++++.+.-.   .   ...++++.| .++||++.+.
T Consensus       317 ~~p~~g~f~~~~~~~~~~---~---~~~~~~~~l~~~~gv~v~pg  355 (388)
T PRK07366        317 PLPEATMYVWAKLPEPWQ---G---NSVEFCTQLVAQTGVAASPG  355 (388)
T ss_pred             cCCCeeEEEEEECCcccC---C---CHHHHHHHHHHhCCEEEeCc
Confidence            345678999998842100   0   134577777 4679998753

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.85  E-value=2.5e-19  Score=182.58  Aligned_cols=301  Identities=13%  Similarity=0.076  Sum_probs=189.9

Q ss_pred             CCcccccCCCCCHHHHHHHHHHHHhc--cccc-----ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235          106 GGIATVCCGHCHPYVVDSIVNQIKRI--QHST-----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus       106 ~g~~~~~lGh~~p~v~~A~~~~l~~~--~~~~-----~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      .+.+....||+||.+++++.++. ..  .++.     ..+..+...+++++|++.++.+.+.++++++|+++.+.+++.+
T Consensus        23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~  101 (398)
T cd00613          23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA  101 (398)
T ss_pred             ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence            44455577999999999987776 32  1111     1122345678888898888655556778888888888888877


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                      +...++.+.|++...+|+.+..++...+...      ...+..++.++.    +..|    .+++++.+.    +++++|
T Consensus       102 ~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~------g~~~~~v~~~~~----~~~d----~~~l~~~i~----~~t~~v  163 (398)
T cd00613         102 IRAYHKRNKVLVPDSAHPTNPAVARTRGEPL------GIEVVEVPSDEG----GTVD----LEALKEEVS----EEVAAL  163 (398)
T ss_pred             HhcccCCCEEEEcCccCcchHHHHHHhcccC------CcEEEEeccCCC----CCcC----HHHHHHhcC----CCeEEE
Confidence            7644334555567779999888776654211      012233332211    1123    466766653    368889


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccc---cC-Cccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGI---GN-GIPL  332 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~l---g~-G~pi  332 (447)
                      ++++.+ ++|.+   .+++++|+++|++||+++|+|++|......+ .   ...+  .+|+++  ++|.+   |+ |...
T Consensus       164 iv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~~~~~~-~---~~~~--~~d~~~~s~~K~~~p~g~Ggp~~  233 (398)
T cd00613         164 MVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGLK-P---PGEY--GADIVVGNLQKTGVPHGGGGPGA  233 (398)
T ss_pred             EEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEeccccccCCC-C---hHHc--CCCEEEeeccccCCCCCCCCCce
Confidence            998865 66877   3568999999999999999999885321111 0   1112  479886  44655   43 4668


Q ss_pred             cccccCHHHHHhhcCC-----------------------------cccccCCCChHHHHHHHHHHHHHhhhh---HHHHH
Q 013235          333 GAVVTTPEIAEVLTRR-----------------------------NYFNTFGGNPVCTAAGHAVLKVIQKDK---LQNNA  380 (447)
Q Consensus       333 gav~~~~~i~~~l~~~-----------------------------~~~~T~~~np~a~aaala~L~~i~~~~---l~~~~  380 (447)
                      |+++.++++++.+...                             ...++++++++.++++.++++.+.+++   +.++.
T Consensus       234 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~  313 (398)
T cd00613         234 GFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERA  313 (398)
T ss_pred             eEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            8888888888765221                             113467788888888888888776544   45788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++++++++++|+++.... .....+.  ..+.+.+..      +......++++.|+++||++.
T Consensus       314 ~~~~~~l~~~L~~~~~~~-~~~~~~~--~~v~~~~~~------~~~~~~~~~~~~L~~~gi~~~  368 (398)
T cd00613         314 HLNANYLAKRLKEVGGVL-PFNGPFF--HEFVLRLPP------LYGIRAEDLAKALIDGGFHAP  368 (398)
T ss_pred             HHHHHHHHHHHHhcCCcc-cCCCCee--EEEEEEcCC------cchHHHHHHHHhhhhcCcccc
Confidence            889999999888763211 1111111  112333311      001235678999999998874

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.85  E-value=1.8e-19  Score=181.23  Aligned_cols=294  Identities=13%  Similarity=0.088  Sum_probs=188.0

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEE-cCCHHHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFF-TNSGTEANELA  174 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~-~~sGseA~e~A  174 (447)
                      .+++.+|||..|..  .+| .+|.+.+++.+.+...    ..|+.+...++.+.++++++...+++++ +++.++++..+
T Consensus        31 ~~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~  103 (361)
T PRK00950         31 IDPESIIKLGSNEN--PLG-PSPKAVEAIEKELSKI----HRYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTL  103 (361)
T ss_pred             CCccceEEccCCCC--CCC-CCHHHHHHHHHHHHhh----cCCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHH
Confidence            46678999988765  566 6789999998877653    2345555588999999998766677888 67778888888


Q ss_pred             HHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      ++...  .+++.|++.+++|......+...             |+..+..|.  ...|+.|    .+++++.+.   + +
T Consensus       104 ~~~~~--~~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~--~~~~~~~----~~~l~~~~~---~-~  158 (361)
T PRK00950        104 MRTFI--DPGDEVIIPTPTFSYYEISAKAH-------------GAKPVYAKR--EEDFSLD----VDSVLNAIT---E-K  158 (361)
T ss_pred             HHHhc--CCCCEEEEcCCChHHHHHHHHHc-------------CCEEEEeec--CCCCCcC----HHHHHHHhc---c-C
Confidence            87542  35577888898886543322211             222222221  1123334    456666553   2 3


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEEEeecccc-CCccc
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPL  332 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pi  332 (447)
                      +.++++...++++|.+.+    .+++.++|+++|+++|+||+|.+|. .+ ..... ..++-.--+-+|||.+| .|+|+
T Consensus       159 ~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~-~~~~~~~~~~~vi~~~S~SK~~g~~GlRi  232 (361)
T PRK00950        159 TKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EY-DYTPLALEYDNLIIGRTFSKVFGLAGLRI  232 (361)
T ss_pred             CCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-cc-chHHHHHhcCCEEEEEeehHhhcCchhhc
Confidence            334444344667777776    7789999999999999999998874 22 12111 11111112237999998 79999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g  412 (447)
                      |++++++++++.+...  ..+++.++++++++.++|+   +.++.++..+..+..++.|.+.   .. +...+..|.+++
T Consensus       233 G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~---l~-~~~~~~~~~~i~  303 (361)
T PRK00950        233 GYGFVPEWLIDYYMRA--KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNE---LP-FKVYPSEANFVL  303 (361)
T ss_pred             chhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhh---cC-eeECCCcceEEE
Confidence            9999999998877642  2456677888888877774   3344444444334444444332   22 222345678888


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++. ..        ...++++.|.++||++.+
T Consensus       304 ~~~~-~~--------~~~~~~~~l~~~gv~v~~  327 (361)
T PRK00950        304 VDVT-PM--------TAKEFCEELLKRGVIVRD  327 (361)
T ss_pred             EECC-CC--------CHHHHHHHHHHCCEEEee
Confidence            8872 10        145788899999999864

>PRK07324 transaminase; Validated

Probab=99.85  E-value=1.1e-19  Score=183.76  Aligned_cols=311  Identities=14%  Similarity=0.087  Sum_probs=194.0

Q ss_pred             EecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC-CCCceEEEcCCHHHHH
Q 013235           94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP-GNLKVVFFTNSGTEAN  171 (447)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~-~~~~~v~~~~sGseA~  171 (447)
                      ++..|...+++..|-..  +. .++.+ +|+.+++.....   .|. .....+|.+.+++++. .+.++|++++++++|+
T Consensus        21 ~~~~~~~~~~~~~~e~~--~~-~~~~~-~~~~~~~~~~~~---~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al   93 (373)
T PRK07324         21 YDIAESCIDSLTLEELL--AL-AGKNP-EAFYQELGQKKL---TYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGAN   93 (373)
T ss_pred             cccccCCCCCCcHHHHH--hc-cCcch-HHHHHHHhcCCc---cCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHH
Confidence            45566666676555432  22 45566 777777765321   222 3345688888888764 3457899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ..++....  ..++.|++..++|..........             |+..+..|......|..|    .+++++.+.   
T Consensus        94 ~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d----~~~l~~~~~---  151 (373)
T PRK07324         94 FLVLYALV--EPGDHVISVYPTYQQLYDIPESL-------------GAEVDYWQLKEENGWLPD----LDELRRLVR---  151 (373)
T ss_pred             HHHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHhCC---
Confidence            99987553  35678999999986654332222             222222222211223233    456665543   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEEEeecccc-CC
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NG  329 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G  329 (447)
                      + ++.++++...++++|.+. +++.+++|.++|++||+++|+||+|.++...+ ..... +..+....+-+|||.++ .|
T Consensus       152 ~-~~kli~i~~p~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~-~~~s~~~~~~~~I~~~s~SK~~~~~G  228 (373)
T PRK07324        152 P-NTKLICINNANNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG-STPSIADLYEKGISTNSMSKTYSLPG  228 (373)
T ss_pred             C-CCcEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCC-CCCChhhccCCEEEEecchhhcCCcc
Confidence            2 344566555566677655 78889999999999999999999999886654 22221 11111112336999999 79


Q ss_pred             ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecc-
Q 013235          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG-  408 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G-  408 (447)
                      +|+|++++++++++.+.......+++.++++..++..+|+.  .+.+.++.++.-+.-++.|.+..++++.+..++..| 
T Consensus       229 ~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg  306 (373)
T PRK07324        229 IRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAV  306 (373)
T ss_pred             ceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCce
Confidence            99999999999998887655566788888888888887752  233444444333333344444444444444455444 


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      .+..+.+..+.        ...+++++|+ +.||++.++
T Consensus       307 ~~~~i~~~~~~--------~~~~~~~~ll~~~gv~v~pg  337 (373)
T PRK07324        307 STSFVKLDVDM--------PSEDFCLKLLKETGVLLVPG  337 (373)
T ss_pred             EEEEEEeCCCC--------CHHHHHHHHHHhcCEEEECc
Confidence            45556653210        1356788875 679998754

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.85  E-value=6.6e-19  Score=180.07  Aligned_cols=312  Identities=12%  Similarity=0.058  Sum_probs=190.0

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHHhCC--CCC-ceEEEcCCHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMP--GNL-KVVFFTNSGTEAN  171 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~~~~~~~~elae~L~~~~~--~~~-~~v~~~~sGseA~  171 (447)
                      ++..+||..|... +++ .+|.+.+++.+.+....   +....+..+....+++.+.+..+  ... ++|++++++++|+
T Consensus        38 ~~~~i~l~~g~~~-~~~-p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al  115 (405)
T PRK06207         38 PGRPVDFSHGDVD-AHE-PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGAL  115 (405)
T ss_pred             CCCceecCCcCCC-CCC-CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence            3456688766553 334 56889998888776531   11112223345566666666544  234 6899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC---cCCCCCCChHHHHHHHHHHHH
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP---YRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~---~~~~~~~d~~~~~~~le~~i~  248 (447)
                      ..+++...  ..++.|++.+++|.+....+...             |...++.|..   ....|+.|    .++|++.+.
T Consensus       116 ~~~~~~l~--~~Gd~Vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~~~~d----~~~l~~~~~  176 (405)
T PRK06207        116 FLAVAATV--ARGDKVAIVQPDYFANRKLVEFF-------------EGEMVPVQLDYLSADKRAGLD----LDQLEEAFK  176 (405)
T ss_pred             HHHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEEeccccCcccCCCcC----HHHHHHhhh
Confidence            99988543  35688999999998765443322             2222222211   11123344    566776664


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC-EE---Eeec
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-IV---TMAK  324 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD-iv---t~sK  324 (447)
                      .   +..+.+++.| ++++|.+. +.+.+++|.++|++||+++|+||+|..|...|...-.+..+...+| ++   +|||
T Consensus       177 ~---~~k~v~l~~P-~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK  251 (405)
T PRK06207        177 A---GVRVFLFSNP-NNPAGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSK  251 (405)
T ss_pred             h---cCeEEEECCC-CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchh
Confidence            3   2234566667 56667665 6888999999999999999999999988655521111111222233 33   5899


Q ss_pred             ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL-QNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l-~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      .++ .|+++||+++++++++.+.......+.+.+.+++.++.+.|+.  .+++ .++.+.. ...++.+.+..++++.+.
T Consensus       252 ~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~-~~~r~~l~~~L~~~~~~~  328 (405)
T PRK06207        252 TESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARH-QAIRDDLLRVLRGVEGVF  328 (405)
T ss_pred             hccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHH-HHHHHHHHHHHhcCCCce
Confidence            999 8999999999999988886533334455566777777766642  1122 2222222 222344444333443232


Q ss_pred             eE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          403 DV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       403 ~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      -. +..|+++++++....       ....++++.|+ ++||++.+
T Consensus       329 ~~~p~gg~fl~~~l~~~~-------~~~~~~~~~l~~~~gV~v~p  366 (405)
T PRK06207        329 VRAPQAGSYLFPRLPRLA-------VSLHDFVKILRLQAGVIVTP  366 (405)
T ss_pred             ecCCCeeEEEEEeCcccC-------CCHHHHHHHHHHhcCEEEeC
Confidence            22 345899999884210       01356888887 67999875

>PRK08960 hypothetical protein; Provisional

Probab=99.85  E-value=3.9e-19  Score=180.70  Aligned_cols=308  Identities=13%  Similarity=0.072  Sum_probs=191.8

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC------CCCCceEEEcCCHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~------~~~~~~v~~~~sGseA~  171 (447)
                      |..++|+..|...  ++ .++.+.+++.+.+....  ....+.....++.+.+++++      +...++|++++++++|+
T Consensus        31 ~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al  105 (387)
T PRK08960         31 GHDVIHLEIGEPD--FT-TAEPIVAAGQAALAAGH--TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGAL  105 (387)
T ss_pred             CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhcCC--CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHH
Confidence            4467888877763  33 47899999988776421  11112233445555555543      23567899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ..++....  .+++.|++.+++|.+..........           .+..++.  ...+.|..|    .+++++.+.   
T Consensus       106 ~~~~~~~~--~~gd~vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~--~~~~~~~~d----~~~l~~~~~---  163 (387)
T PRK08960        106 LLASSLLV--DPGKHWLLADPGYPCNRHFLRLVEG-----------AAQLVPV--GPDSRYQLT----PALVERHWN---  163 (387)
T ss_pred             HHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCC-----------eEEEEec--CcccCCCCC----HHHHHHHhC---
Confidence            99987542  3568899999999876654432211           2223332  111223334    456666654   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-  327 (447)
                      ++....++..| ++++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ ...  ......++++   +|||.+| 
T Consensus       164 ~~~~~i~i~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~-~~~--~~~~~~~~vi~~~S~SK~~g~  238 (387)
T PRK08960        164 ADTVGALVASP-ANPTGTLL-SRDELAALSQALRARGGHLVVDEIYHGLTYGV-DAA--SVLEVDDDAFVLNSFSKYFGM  238 (387)
T ss_pred             ccceEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCC--ChhhccCCEEEEeecccccCC
Confidence            23456677777 45667665 68889999999999999999999998875433 221  1223446666   4899997 


Q ss_pred             CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEee
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRG  406 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg  406 (447)
                      .|+|+|++++++++++.+.......+.+.+.+++.++.+.|+. +.++..++.++.-+.-++.+.+..+++++.. ..+.
T Consensus       239 ~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~  317 (387)
T PRK08960        239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQ  317 (387)
T ss_pred             cccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCC
Confidence            7999999999999988776533334566788888888887742 1112222222222222333333333444322 2355


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .|+++++++.+..    .   ...++++.|+ ++||++.+
T Consensus       318 g~~f~~~~~~~~~----~---~~~~~~~~ll~~~gi~v~p  350 (387)
T PRK08960        318 GAFYLYADISAFG----G---DAFAFCRHFLETEHVAFTP  350 (387)
T ss_pred             eeEEEEEeccccC----C---CHHHHHHHHHHhCCEEEcC
Confidence            5888899884310    1   1356777776 57999875

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=3e-19  Score=180.74  Aligned_cols=304  Identities=13%  Similarity=0.053  Sum_probs=195.0

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--------CCCceEEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--------GNLKVVFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~--------~~~~~v~~~~sGseA  170 (447)
                      ..++|+..|..  +++ .+|.+.+++.+.++.... ...|+.....+|.+.|++++.        .+.++|+++++++++
T Consensus        28 ~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a  103 (374)
T PRK02610         28 IQLDRLDTNEF--PYD-LPPDLKQKLAWLYQQGIE-SNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL  103 (374)
T ss_pred             cceeEecCCCC--CCC-CCHHHHHHHHHHHhhccc-ccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence            46999988876  455 578999999887665311 123555566778888888765        345689999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..++... ...+.+.|++.+++|.+....+...             |...+..|.. ...|+.|    .+++++.+...
T Consensus       104 l~~~~~~~-~~~g~~~Vlv~~P~y~~~~~~~~~~-------------g~~~~~~~~~-~~~~~~d----~~~l~~~~~~~  164 (374)
T PRK02610        104 IRSLLIAT-CLGGEGSILVAEPTFSMYGILAQTL-------------GIPVVRVGRD-PETFEID----LAAAQSAIEQT  164 (374)
T ss_pred             HHHHHHHH-cCCCCCeEEEcCCChHHHHHHHHHc-------------CCEEEEecCC-cccCCCC----HHHHHHHHHhh
Confidence            98777533 2234347999999997666544332             2333333321 1124445    56677666532


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG  327 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg  327 (447)
                      ...++.++++.+.++++|.+. +.+.+++|.++|  +++++|+||+|..|.... ..   ....-.++++   +|||.+|
T Consensus       165 ~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~-~~---~~~~~~~~~ivi~SfSK~~g  237 (374)
T PRK02610        165 QNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTT-LV---GELAQHPNWVILRTFSKAFR  237 (374)
T ss_pred             cCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccc-hH---HHHhcCCCEEEEEecchhcc
Confidence            113556665545578888776 566678888876  499999999998884221 11   1111123433   6999996


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg  406 (447)
                       .|+|+||+++++++++.+....  ..++.|.+++.++.++|+..  +.+.+++++.-+. ++.+.+..++++.+...+.
T Consensus       238 ~~GlRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~  312 (374)
T PRK02610        238 LAAHRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RDRLYQALQELPQLRVWPS  312 (374)
T ss_pred             CcccceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCC
Confidence             7999999999999998886533  34667888888887777522  3344444444333 3444444344433333466


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|+++++++...        ....++++.|+++||+++.
T Consensus       313 ~g~f~~~~l~~~--------~~~~~~~~~l~~~gi~v~~  343 (374)
T PRK02610        313 AANFLYLRLSQD--------AALAALHQALKAQGTLVRH  343 (374)
T ss_pred             cceEEEEeCCCC--------CCHHHHHHHHHHCCEEEEe
Confidence            788988887421        1135688889999999863

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.84  E-value=3.9e-19  Score=178.72  Aligned_cols=295  Identities=14%  Similarity=0.094  Sum_probs=187.9

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      .+++.++||..|..  ++| .+|.+.+|+.+.+...    ..|+.....+|.+.+++++..+.++|++++++++++..++
T Consensus        17 ~~~~~~i~l~~~~~--~~~-~p~~~~~a~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~   89 (356)
T PRK08056         17 ISPDQLLDFSANIN--PLG-MPVSLKRAIIDNLDCA----ERYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVV   89 (356)
T ss_pred             CChhhEEEeccccC--CCC-CCHHHHHHHHHHHHhc----ccCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHH
Confidence            45678899987654  567 7789999998877653    2456556789999999998777788999999999999988


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      +..   .++ ++++..++|......+...             |+..+..|......|..|     +++++.+.   + ++
T Consensus        90 ~~l---~~g-~viv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~-----~~~~~~~~---~-~~  143 (356)
T PRK08056         90 SGL---KPR-RAMIVTPGFAEYRRALQQV-------------GCEIRRYSLREADGWQLT-----DAILEALT---P-DL  143 (356)
T ss_pred             HHh---CCC-CEEEeCCCcHHHHHHHHHc-------------CCeEEEEecccccCCCcc-----HHHHHhcc---C-CC
Confidence            754   233 5788888886544332221             333333332211122222     12323332   2 34


Q ss_pred             EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc-ccccccCCCCCEE--Eeecccc-CCcc
Q 013235          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF-WGFEAHGVVPDIV--TMAKGIG-NGIP  331 (447)
Q Consensus       256 aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~-~~~~~~gv~pDiv--t~sK~lg-~G~p  331 (447)
                      .++++...++++|.+ .+.+.+++|.++|+++|+++|+||+|.+|...+... -.++.++  ..++  +|||.++ .|+|
T Consensus       144 k~v~l~~p~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~i~~~S~SK~~~~~G~R  220 (356)
T PRK08056        144 DCLFLCTPNNPTGLL-PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNP--HLWVLRSLTKFYAIPGLR  220 (356)
T ss_pred             CEEEEeCCcCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCC--CEEEEEechhhccCcchh
Confidence            444444346667764 578899999999999999999999999885433111 1112111  2233  6899999 8999


Q ss_pred             cccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCCeeeEee
Q 013235          332 LGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (447)
Q Consensus       332 igav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~i~~vrg  406 (447)
                      +|++++ ++++++.+...  ...++.+.+++.++.+.|+   ++.+.    +.+++..+++.+.|+    +++.+...+.
T Consensus       221 iG~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~~  291 (356)
T PRK08056        221 LGYLVNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALC----ALPLLTVWPG  291 (356)
T ss_pred             heeeecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHh----cCCCcEEcCC
Confidence            999998 46777766532  2456667777777777663   33333    333444444444443    3322333355


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|.++++.+..+          ..++++.|+++||++++
T Consensus       292 ~~~~~~~~~~~~----------~~~~~~~l~~~gI~v~~  320 (356)
T PRK08056        292 RANYLFLRCERP----------DIDLQRALLTQRILIRS  320 (356)
T ss_pred             CCcEEEEEcCCC----------hHHHHHHHHHCCeEEEE
Confidence            688888876321          24688899999999875

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.84  E-value=6.9e-19  Score=177.17  Aligned_cols=298  Identities=15%  Similarity=0.080  Sum_probs=188.4

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      ...+||..|..  +++ .+|.+.+++.+.+...    ..|+.+...+|.+.|++++..+.++|+++++++|++..+++..
T Consensus        22 ~~~i~l~~~~n--~~~-~~~~~~~a~~~~~~~~----~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l   94 (360)
T PRK07392         22 DAILDFSASIN--PLG-PPESVIAAIQSALSAL----RHYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL   94 (360)
T ss_pred             ccEEEeCCcCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence            46899987655  466 6789999988777643    2355445568999999998777788999999999999888753


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                         ..++.|++.+++|.+....+...             |...++.|....+.+..+    ..+++++.... ++....+
T Consensus        95 ---~~g~~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~  153 (360)
T PRK07392         95 ---AQLRAVYLITPAFGDYRRALRAF-------------GATVKELPLPLDQPSPGL----TLRLQTLPPQL-TPNDGLL  153 (360)
T ss_pred             ---CCCCeEEEECCCcHHHHHHHHHc-------------CCeEEEEecccccCCccc----ccCHHHHHHhc-cCCCEEE
Confidence               23468999999998776554432             222222222111111000    11233333222 2234456


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccccCCCCCEE---Eeecccc-CCcccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIV---TMAKGIG-NGIPLG  333 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~~gv~pDiv---t~sK~lg-~G~pig  333 (447)
                      +.+| ++++|.+..    .++|.++++++++ +|+||+|..|...+ +.-. ....+..+.++   +|||.++ .|+|+|
T Consensus       154 l~nP-~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~-~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG  226 (360)
T PRK07392        154 LNNP-HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPD-AEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLG  226 (360)
T ss_pred             EeCC-CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCc-cccchHHHhhcCCCEEEEEechhhhcCCchhee
Confidence            6666 666777765    6678889999985 66699999986555 2111 11122234444   6899999 999999


Q ss_pred             ccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       334 av~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      ++++++++++.+....  ..|+.|.+++.++.+.|+   +..+.++.++.-+.-++.|.+..++++.+.-..+.|.++.+
T Consensus       227 ~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~  301 (360)
T PRK07392        227 YAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLV  301 (360)
T ss_pred             eeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEE
Confidence            9999999988876432  457788999888888875   33444443333222333333333334333334567888887


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      ++..          ...++++.++ +.||++.+.
T Consensus       302 ~~~~----------~~~~l~~~ll~~~gv~v~pg  325 (360)
T PRK07392        302 QSQG----------SALQLQEKLLQQHRILIRDC  325 (360)
T ss_pred             EcCC----------CHHHHHHHHHhhCCEEEEeC
Confidence            7632          1356777764 679998753

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.84  E-value=1.2e-18  Score=178.14  Aligned_cols=322  Identities=12%  Similarity=0.051  Sum_probs=188.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc---ccccccccchHHHHHHHHHHHhCC--CCCc-eEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI---QHSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~---~~~~~~~~~~~~~elae~L~~~~~--~~~~-~v~~~~sGseA  170 (447)
                      .|..++||..|...   +..++.+.+++.+.+...   .+....+.......+++.+.+..+  ...+ +|++++++++|
T Consensus        31 ~~~~~~~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a  107 (403)
T PRK08636         31 AGEDIIDFSMGNPD---GPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG  107 (403)
T ss_pred             cCCCEEEcCCcCCC---CCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence            45678999876543   223566777777655431   111111222333445555544333  3345 69999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..+++...  .+++.|++.+++|.+....+...             |...++.|..+...|+.|.+.+.+.+++++...
T Consensus       108 l~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  172 (403)
T PRK08636        108 YVHLVQAIT--NPGDVAIVPDPAYPIHSQAFILA-------------GGNVHKMPLEYNEDFELDEDQFFENLEKALRES  172 (403)
T ss_pred             HHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhc-------------CCEEEEEeccccccCccChhhhhhHHHHHHhhc
Confidence            999998543  35789999999998765544332             333333333222235556555556777777654


Q ss_pred             CCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCE----EEeecc
Q 013235          251 TSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI----VTMAKG  325 (447)
Q Consensus       251 ~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDi----vt~sK~  325 (447)
                      .+ ++.++++. | ++++|.+. +.+-+++|.++|++|++++|.||+|..|-..+..........-.+|.    .+|||.
T Consensus       173 ~~-~~~~i~~~~P-~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  249 (403)
T PRK08636        173 SP-KPKYVVVNFP-HNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKS  249 (403)
T ss_pred             cC-CceEEEEeCC-CCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccc
Confidence            33 34444444 5 55666554 78889999999999999999999998875444211111111112332    258999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                      +| .|+++|++++++++++.+........++.+.+.+.++..+++.  .+++++++++.-+.-++.+.+...++++-...
T Consensus       250 ~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  327 (403)
T PRK08636        250 YNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAGWELQK  327 (403)
T ss_pred             cCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence            96 8999999999999988776533333455666666666555531  12333333322222233333333333321122


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      +..|+++++++.+....     ....+++++++ ++||++.+.
T Consensus       328 p~~g~~~~~~l~~~~~~-----~~~~~l~~~ll~~~gV~v~pg  365 (403)
T PRK08636        328 PRASMFVWAKIPEPARH-----LGSLEFSKQLLTEAKVAVSPG  365 (403)
T ss_pred             CCcceEEEEECCCccCC-----CCHHHHHHHHHHhCCEEEecc
Confidence            45689999988421100     01356777655 689998653

>PRK09148 aminotransferase; Validated

Probab=99.84  E-value=6.4e-19  Score=180.19  Aligned_cols=310  Identities=15%  Similarity=0.051  Sum_probs=188.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCc-eEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLK-VVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~-~v~~~~sGs  168 (447)
                      .|+.+|||..|..  .++ .++.+.+++.+.++..  ....|+.. ...+|.+.+++++    +  ...+ +|+++++++
T Consensus        28 ~~~~~i~l~~~~p--~~~-~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~  102 (405)
T PRK09148         28 AGADIIDLGMGNP--DLP-TPQHIVDKLCETAQDP--RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSK  102 (405)
T ss_pred             cCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHcCc--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChH
Confidence            5677899987654  344 3678888887766431  11234322 3445555555543    2  2344 799999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +++..+++...  ..++.|++.+++|.+....+...             |+..++.|....+.|       .+++++.+.
T Consensus       103 ~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~-------~~~l~~~~~  160 (405)
T PRK09148        103 EGFANMAQAIT--APGDVILCPNPSYPIHAFGFIMA-------------GGVIRSVPAEPDEEF-------FPALERAVR  160 (405)
T ss_pred             HHHHHHHHHhc--CCCCEEEEcCCCCcccHHHHHhc-------------CCEEEEEeCCCCCCC-------ccCHHHHHh
Confidence            99999987553  25678999999998775443322             333333322111111       234555554


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC----EEEeec
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAK  324 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD----ivt~sK  324 (447)
                      ...++....+++.| ++++|.+. +.+.+++|.++|++||+++|+||+|..|...+...-......-.+|    +-+|||
T Consensus       161 ~~~~~~~~v~l~~P-~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK  238 (405)
T PRK09148        161 HSIPKPIALIVNYP-SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSK  238 (405)
T ss_pred             hccccceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccc
Confidence            43343445555556 45666655 7888999999999999999999999887543321111111211123    236999


Q ss_pred             ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcC
Q 013235          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      .++ .|+++|++++++++++.+.......+++.+++++.++.+.|+.  .+++.    +.+++..+.+.+.|+    +++
T Consensus       239 ~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~L~----~~~  312 (405)
T PRK09148        239 TFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVESFG----RAG  312 (405)
T ss_pred             ccCCcchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHH----HcC
Confidence            999 8999999999999998886543344667778888888777752  12333    333444444444443    334


Q ss_pred             CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       400 ~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      ........|+++++++.....   .  ....++++.|+ ++||.+.+.
T Consensus       313 ~~~~~p~~g~f~~~~l~~~~~---~--~~~~~~~~~ll~~~gV~v~pg  355 (405)
T PRK09148        313 WDIPPPAASMFAWAPIPEAFR---H--LGSLEFSKLLVEKADVAVAPG  355 (405)
T ss_pred             CccCCCCeeEEEEEECCCccC---C--CCHHHHHHHHHHhCCEEEeCc
Confidence            321224568899998742110   0  01346777766 689998753

>PRK08068 transaminase; Reviewed

Probab=99.84  E-value=1e-18  Score=177.81  Aligned_cols=307  Identities=11%  Similarity=0.019  Sum_probs=184.0

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----C--CCCc-eEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK-VVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~~-~v~~~~sGs  168 (447)
                      .|..+|||..|...   ...+|.+.+++.+.++...  ...|. .....+|.+++++++    +  .+.+ +|+++++++
T Consensus        30 ~~~~~i~l~~~~p~---~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~  104 (389)
T PRK08068         30 EGHDVINLGQGNPD---QPTPEHIVEALQEAAENPA--NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGK  104 (389)
T ss_pred             cCCCeEEecCCCCC---CCCCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence            34567898877432   3467889999888776421  12342 333455666666654    2  3345 688999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +++..++....  .+++.|++.+++|......+...             |+..+..|......|..|    .+++++.+.
T Consensus       105 ~~l~~~~~~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d----~~~l~~~~~  165 (389)
T PRK08068        105 AGLVELPQCLM--NPGDTILVPDPGYPDYLSGVALA-------------RAQFETMPLIAENNFLPD----YTKIPEEVA  165 (389)
T ss_pred             HHHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhc-------------CCEEEEeecccccCCCCC----HHHHHHhcc
Confidence            99998776432  35678999999997665443322             333333332211123223    455555543


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccccCCCCC---EEEeec
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPD---IVTMAK  324 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~~gv~pD---ivt~sK  324 (447)
                      .   +..+.+++.| ++++|.+. +.+.+++|.++|++|++++|+||+|..|...+..... ....+..+.   +-+|||
T Consensus       166 ~---~~~~v~l~~P-~NPTG~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK  240 (389)
T PRK08068        166 E---KAKLMYLNYP-NNPTGAVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSK  240 (389)
T ss_pred             c---cceEEEEECC-CCCCCCcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchh
Confidence            2   2334555557 56677655 7888999999999999999999999877655421111 122222222   236999


Q ss_pred             ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      .+| .|+|+||+++++++++.+.........+..+..+.++.+.|..-.+  +.+.+..++..+++.+.|++    +++ 
T Consensus       241 ~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~----~g~-  315 (389)
T PRK08068        241 TFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACRE----IGW-  315 (389)
T ss_pred             ccCCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCC-
Confidence            997 7999999999999998886533222233344556666666531110  12334444444444444433    332 


Q ss_pred             eeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          402 GDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       402 ~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      .-.+.. |+++++++...        ....++.+.|++ +||++.+
T Consensus       316 ~~~~~~g~~~~~v~~~~~--------~~~~~~~~~l~~~~gi~v~p  353 (389)
T PRK08068        316 EVDAPKGSFFAWMPVPKG--------YTSEQFADLLLEKAHVAVAP  353 (389)
T ss_pred             cccCCCeeEEEEEECCCC--------CCHHHHHHHHHHhCCEEEec
Confidence            223333 56678887321        013578899986 6999975

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=4.6e-19  Score=179.73  Aligned_cols=292  Identities=14%  Similarity=0.109  Sum_probs=188.2

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      .+...|||..|..  ++| .+|.+.+++.+ ...    ...|+.+...+|.++|++++..+.++|++++++++++..+++
T Consensus        50 ~~~~~i~l~~n~~--p~~-~~~~v~~a~~~-~~~----~~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~  121 (380)
T PLN03026         50 KPEDIVKLDANEN--PYG-PPPEVLEALGN-MKF----PYVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMR  121 (380)
T ss_pred             CccceEEccCCCC--CCC-CCHHHHHHHHh-hHh----hccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHH
Confidence            4568899988775  456 67888888754 221    123566667889999999987667889999999999999887


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ...  ..++.|++.+++|......+...             |...+..|..  ..|..|    .+++++.+..  + ++.
T Consensus       122 ~~~--~~gd~Vlv~~P~y~~y~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~~~~--~-~~~  177 (380)
T PLN03026        122 CVL--DPGDKIIDCPPTFGMYVFDAAVN-------------GAEVIKVPRT--PDFSLD----VPRIVEAVET--H-KPK  177 (380)
T ss_pred             Hhc--CCCCEEEEcCCChHHHHHHHHHc-------------CCEEEEeecC--CCCCcC----HHHHHHHHhc--c-CCc
Confidence            542  25578999999986443322211             2333332221  123334    4566666632  1 345


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      ++++...++++|.+.+    .+++.++++.. +++|+||+|..|...++ ..  ....-.+.++   +|||.+| .|+|+
T Consensus       178 ~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~-~~--~~~~~~~~viv~~SfSK~~glaGlRi  249 (380)
T PLN03026        178 LLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQES-RM--KWVKKYDNLIVLRTFSKRAGLAGLRV  249 (380)
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcc-hH--HHHHhCCCEEEEecchHhhcCccccc
Confidence            5555555777787775    56667777654 89999999998854332 11  1111223433   6999999 89999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCCeeeEeecc
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G  408 (447)
                      ||+++++++++.+....  ..|+.+.+++.++.++|+   +.++.    +.+++..+++.+.|+    +++.+.-.+..|
T Consensus       250 Gy~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~---~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~p~~~  320 (380)
T PLN03026        250 GYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALS---NPKYLEDVKNALVEERERLFGLLK----EVPFLEPYPSDA  320 (380)
T ss_pred             eeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHHH----HCCCCeECCCCC
Confidence            99999999998876432  346778888888888884   22333    333333344444443    334332245678


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.+++...        ....++.+.|+++||+++.
T Consensus       321 ~f~~~~~~~~--------~~~~~~~~~l~~~gI~v~~  349 (380)
T PLN03026        321 NFILCRVTSG--------RDAKKLKEDLAKMGVMVRH  349 (380)
T ss_pred             eEEEEECCCC--------CCHHHHHHHHHHCCeEEEE
Confidence            8888886321        0135788999999999864

>PLN00175 aminotransferase family protein; Provisional

Probab=99.84  E-value=1.5e-18  Score=177.81  Aligned_cols=304  Identities=15%  Similarity=0.158  Sum_probs=188.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----C--CCCc-eEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK-VVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~~-~v~~~~sGseA~  171 (447)
                      ..|||..|....  . .++.+.+++.+.++..   ...|. .....+|.+.+++++    +  .+.+ +|++++++++|+
T Consensus        55 ~~i~l~~G~P~~--~-~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al  128 (413)
T PLN00175         55 GAINLGQGFPNF--D-GPDFVKEAAIQAIRDG---KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAI  128 (413)
T ss_pred             CeEecCCCCCCC--C-CCHHHHHHHHHHHhcC---CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHH
Confidence            579998887642  3 4688899988887652   12232 223444555554433    2  2333 689999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ..++...  ...++.|++.+++|.+........             |...+..|.... .|..|    .++|++.+..  
T Consensus       129 ~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~~----~~~l~~~~~~--  186 (413)
T PLN00175        129 AATILGL--INPGDEVILFAPFYDSYEATLSMA-------------GAKIKTVTLRPP-DFAVP----EDELKAAFTS--  186 (413)
T ss_pred             HHHHHHh--CCCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEEECCcc-cCCCC----HHHHHHhcCc--
Confidence            9988743  236688999999997655433322             222222221111 13334    5667766642  


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEE---Eeecccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIV---TMAKGIG  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDiv---t~sK~lg  327 (447)
                        ++.++++...++++|.+. +++.+++|.++|++||+++|+||+|..|...+ ....+ +..+..+.++   +|||.++
T Consensus       187 --~~k~i~i~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~s~~~~~~~~~~vi~i~SfSK~~~  262 (413)
T PLN00175        187 --KTRAILINTPHNPTGKMF-TREELELIASLCKENDVLAFTDEVYDKLAFEG-DHISMASLPGMYERTVTMNSLGKTFS  262 (413)
T ss_pred             --CceEEEecCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEecccCccccCC-cccChhhCCCCcCcEEEEecchhhcc
Confidence              345666665667778765 78899999999999999999999998875544 22122 2222222333   6899999


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                       .|+|+||+++++++++.+.......+++.+++.+.++.+.|+.-++  +++.+..++..+.+.+.|++    +++....
T Consensus       263 ~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~  338 (413)
T PLN00175        263 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE----VGFKVYP  338 (413)
T ss_pred             CcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----CCCeecC
Confidence             7999999999999998886544445788888888888888853111  12333444444555555544    3321112


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ...|+++++.+...+   ..   ...++++.|+ ++||.+.+
T Consensus       339 p~g~~f~~~~~~~~~---~~---~~~~~~~~ll~~~gV~v~p  374 (413)
T PLN00175        339 SSGTYFVMVDHTPFG---FE---NDIAFCEYLIEEVGVAAIP  374 (413)
T ss_pred             CCeeEEEEEeccccC---CC---CHHHHHHHHHHhCCEEEeC
Confidence            233667777763211   00   1356888886 56998865

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.84  E-value=6.4e-19  Score=179.34  Aligned_cols=310  Identities=12%  Similarity=0.065  Sum_probs=184.5

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhC------CCCCceEEEcCCHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM------PGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~------~~~~~~v~~~~sGseA~  171 (447)
                      ..+|||..|...  ++ .++.+.+++.+.+....   ..| +.....+|.+.+++++      +...+++++++|+++|+
T Consensus        33 ~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al  106 (391)
T PRK08361         33 ENVISLGIGEPD--FD-TPKNIKEAAKRALDEGW---THYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEAT  106 (391)
T ss_pred             cCeEEcCCCCCC--CC-CCHHHHHHHHHHHhcCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHH
Confidence            357998877653  44 36788888887765421   112 3334455666666553      23457899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ..+++...  ..++.|++.+++|.+....+.. .            |...++.|....+.|..|    .+++++.+..  
T Consensus       107 ~~~~~~l~--~~g~~Vlv~~p~y~~~~~~~~~-~------------g~~~~~v~~~~~~~~~~d----~~~l~~~i~~--  165 (391)
T PRK08361        107 YLAFESLL--EEGDEVIIPDPAFVCYVEDAKI-A------------EAKPIRIPLREENEFQPD----PDELLELITK--  165 (391)
T ss_pred             HHHHHHhc--CCCCEEEEcCCCCcccHHHHHH-c------------CCEEEEEecCCccCCCCC----HHHHHHhccc--
Confidence            99987542  3567899999998765433221 1            222333322222223344    5666666542  


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eeecccc-C
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG-N  328 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg-~  328 (447)
                        ++.++++...++++|.+. +.+.+++|.++|+++++++|+||++..|...+.............+++  ++||.+| .
T Consensus       166 --~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~  242 (391)
T PRK08361        166 --RTRMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMT  242 (391)
T ss_pred             --ccEEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCc
Confidence              334444443366777665 677889999999999999999999988744332111111111122333  6899998 7


Q ss_pred             CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec-
Q 013235          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-  407 (447)
Q Consensus       329 G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-  407 (447)
                      |+++|++++++++++.+.......+++.+.+.+.++.+.|+.-...+..++.++.-+..++.+.+..++++.+.-.+.. 
T Consensus       243 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g  322 (391)
T PRK08361        243 GWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKG  322 (391)
T ss_pred             HhhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCE
Confidence            9999999999999887654333345667778777777777421111223333333222333333333333323323333 


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      |+++++++....    .   ...++.+.|+ ++||++.+
T Consensus       323 ~~~~~~~l~~~~----~---~~~~l~~~l~~~~gv~v~p  354 (391)
T PRK08361        323 AFYVFANIDETG----M---SSEDFAEWLLEKARVVVIP  354 (391)
T ss_pred             EEEEEEECCCCC----C---CHHHHHHHHHHhCCEEEcC
Confidence            677888874211    0   1346777776 47999865

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.84  E-value=4.4e-19  Score=177.41  Aligned_cols=292  Identities=15%  Similarity=0.142  Sum_probs=190.0

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      .+.|||..|..  .++ .+|++++|+.+++...    ..|..+...++.+.++++++.+.+++++++++++++..+++..
T Consensus        19 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l   91 (346)
T TIGR01141        19 KEVIKLNSNEN--PFG-PPPKAKEALRAEADKL----HRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF   91 (346)
T ss_pred             CceEEccCCCC--CCC-CCHHHHHHHHHhHHHh----hcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence            47999998776  456 5799999999877543    2344444578999999998765678999999999998888754


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                      .  .++++|++.+++|......+..             .|+.....|...  .+..|    .+++++.+.   + +++++
T Consensus        92 ~--~~gd~v~~~~p~y~~~~~~~~~-------------~g~~~~~~~~~~--~~~~d----~~~l~~~~~---~-~~~~v  146 (346)
T TIGR01141        92 L--EPGDAVLVPPPTYSMYEISAKI-------------HGAEVVKVPLDE--DGQLD----LEDILVAID---D-KPKLV  146 (346)
T ss_pred             c--CCCCEEEEcCCCHHHHHHHHHH-------------cCCeEEEeccCC--CCCCC----HHHHHHhcC---C-CCCEE
Confidence            3  3567899999888432211111             133333332211  12233    455665542   2 45666


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      ++...++++|.+.+    ++++.++|+.+  |+++|+||+|.+|...+ ..+  ......++++   +++|.+| .|+++
T Consensus       147 ~l~~p~NptG~~~~----~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~-~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~  219 (346)
T TIGR01141       147 FLCSPNNPTGNLLS----RSDIEAVLERTPEDALVVVDEAYGEFSGEP-STL--PLLAEYPNLIVLRTLSKAFGLAGLRI  219 (346)
T ss_pred             EEeCCCCCCCCCCC----HHHHHHHHHhCCCCcEEEEECchhhhcCCc-cHH--HHHhhCCCEEEEehhhHhhhchhhhc
Confidence            66666777888876    56666666665  99999999999775432 222  1122234544   5889996 68999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      |++++++++.+.+...  ..+|+.+++++.++.+.|+... -++..++++++.+++++.|++    ++.+.-++..|.++
T Consensus       220 G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~g~~~  293 (346)
T TIGR01141       220 GYAIANAEIIDALNKV--RAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKK----LPGLEVYPSDANFV  293 (346)
T ss_pred             eeeecCHHHHHHHHhc--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCEECCCcCCEE
Confidence            9999999998887643  2457778989888877775432 112334444444455554443    32233344568888


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++..          ...++++.|.++||++.+
T Consensus       294 ~~~~~~----------~~~~~~~~L~~~gI~v~~  317 (346)
T TIGR01141       294 LIRFPR----------DADALFEALLEKGIIVRD  317 (346)
T ss_pred             EEecCC----------CHHHHHHHHHHCCeEEEe
Confidence            888732          145788899999999875

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.84  E-value=1.3e-18  Score=176.63  Aligned_cols=304  Identities=14%  Similarity=0.094  Sum_probs=185.8

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC------CCCCceEEEcCCHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM------PGNLKVVFFTNSGTEANE  172 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~------~~~~~~v~~~~sGseA~e  172 (447)
                      .++||..|..  .+. .+|++.+++.+.+...   ...|.++ ...+|.+.+++++      +...+++++++++++|+.
T Consensus        30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~  103 (384)
T PRK06348         30 DIIDLSLGDP--DLI-TDESIINAAFEDAKKG---HTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMY  103 (384)
T ss_pred             CcEEcCCCCC--CCC-CCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHH
Confidence            4688887755  344 3577777666544321   1223322 2344555555543      345678999999999999


Q ss_pred             HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (447)
Q Consensus       173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (447)
                      .++....  .+++.|++.+++|.+....+...             |...++.|......|..|    .+++++.+..   
T Consensus       104 ~~~~~~~--~~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~~~~---  161 (384)
T PRK06348        104 LALQSIL--DPGDEVIIHEPYFTPYKDQIEMV-------------GGKPIILETYEEDGFQIN----VKKLEALITS---  161 (384)
T ss_pred             HHHHHhc--CCCCEEEEeCCCCcchHHHHHHc-------------CCEEEEecCCcCcCCcCC----HHHHHHhhCc---
Confidence            9988653  25678999999998766554433             222233322111123334    5667766642   


Q ss_pred             CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCCCCEE---Eeecccc-
Q 013235          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIV---TMAKGIG-  327 (447)
Q Consensus       253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~pDiv---t~sK~lg-  327 (447)
                      +..+.++..| ++++|.+. +.+.+++|.++|+++|+++|+||+|.+|...+ ....+... +..+.++   +|||.++ 
T Consensus       162 ~~~~v~l~~p-~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l  238 (384)
T PRK06348        162 KTKAIILNSP-NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAM  238 (384)
T ss_pred             CccEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCC
Confidence            1223444445 66677765 78889999999999999999999999885433 22111111 1222333   6899999 


Q ss_pred             CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                      .|+|+|++++++++++.+.......+++.++++..++..+|+..++  +++.+..+++.+++.+.|+.    ++.+.-..
T Consensus       239 ~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~----~~~~~~~~  314 (384)
T PRK06348        239 TGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES----IPNLSLHP  314 (384)
T ss_pred             ccccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc----CCCceecc
Confidence            8999999999999988776544456788899999888888853211  12233333444444444433    22222222


Q ss_pred             -ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          406 -GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       406 -g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                       ..|+++++++....    .   ...++++.|+ +.||.+.+
T Consensus       315 p~gg~~~~~~~~~~~----~---~~~~l~~~l~~~~gv~v~p  349 (384)
T PRK06348        315 PKGSIYAFINIKKTG----L---SSVEFCEKLLKEAHVLVIP  349 (384)
T ss_pred             CCeeEEEEEecccCC----C---CHHHHHHHHHHhCCEEEcC
Confidence             34677888874211    0   1356788876 56998874

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.84  E-value=4.8e-19  Score=176.19  Aligned_cols=280  Identities=21%  Similarity=0.220  Sum_probs=188.6

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      ...+||..|..  +++.  | +.++   ..+.    ...|+++...++.+.++++++...+++++++++++++..+.++ 
T Consensus        17 ~~~~~~~~~~~--~~~~--~-~~~~---~~~~----~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-   83 (330)
T TIGR01140        17 EDWLDFSTGIN--PLGP--P-VPPI---PASA----WARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-   83 (330)
T ss_pred             hheeEccccCC--CCCC--C-hhhc---chHH----HhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-
Confidence            45788888874  3342  3 2221   1111    1235555568899999999876667899999999999886554 


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                        .+++ +|++.+++|++.......             .|+..+..|         |    .+++++.+..    ..+.+
T Consensus        84 --l~~g-~vl~~~p~y~~~~~~~~~-------------~g~~~~~~~---------d----~~~l~~~~~~----~~~v~  130 (330)
T TIGR01140        84 --LAPG-RVLVLAPTYSEYARAWRA-------------AGHEVVELP---------D----LDRLPAALEE----LDVLV  130 (330)
T ss_pred             --hCCC-eEEEeCCCcHHHHHHHHH-------------cCCEEEEeC---------C----HHHHHhhccc----CCEEE
Confidence              2344 799999999876543321             133344333         2    4566665531    22566


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGA  334 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~piga  334 (447)
                      ++.| ++++|.+. +.+.+++|.++|+++|+++|+||+|.+|.... ....  ..+..++++   +|||.+| .|+|+|+
T Consensus       131 i~~p-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~--~~~~~~~~i~~~S~SK~~g~~G~R~G~  205 (330)
T TIGR01140       131 LCNP-NNPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPDA-SLAP--QAARFPGLVVLRSLTKFFGLAGLRLGF  205 (330)
T ss_pred             EeCC-CCCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCcc-chhh--HhccCCCEEEEEecchhhcCchhhhhh
Confidence            6777 45666655 78889999999999999999999998885432 2221  112223444   7999999 7999999


Q ss_pred             cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                      +++++++++.+...  ..+++.|+++++++.+.|+   ++++.++.++.-+..++.+.+..++++.+....+.|+|++++
T Consensus       206 i~~~~~~~~~l~~~--~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~  280 (330)
T TIGR01140       206 VVAHPALLARLREA--LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVR  280 (330)
T ss_pred             eeCCHHHHHHHHhc--CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEE
Confidence            99999999888743  3456778888777777664   445555555555666666666666666444446678998887


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+           ..+++++|+++||++.+
T Consensus       281 ~~~-----------~~~l~~~l~~~gi~v~p  300 (330)
T TIGR01140       281 TPD-----------AAALHEALARRGILIRD  300 (330)
T ss_pred             cCC-----------HHHHHHHHHHCCEEEEE
Confidence            631           24788999999999875

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.83  E-value=1.2e-18  Score=178.25  Aligned_cols=310  Identities=15%  Similarity=0.059  Sum_probs=184.3

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC----C---CCCc-eEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P---GNLK-VVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~----~---~~~~-~v~~~~sGs  168 (447)
                      .|+.++|+..|..  .++ .+|.+.+++.+.+....  ...|+.....+|.+.+++++    +   .+.+ +|+++++++
T Consensus        42 ~~~~~i~L~~g~p--~~~-~~~~~~~~l~~~~~~~~--~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~  116 (410)
T PRK06290         42 PDMELIDMGVGEP--DEM-ADESVVEVLCEEAKKPE--NRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSK  116 (410)
T ss_pred             CCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHH
Confidence            5667899988775  455 46788888877664321  12344344455666666553    2   2334 699999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +++..++....  ..++.|++.+++|.+....+...             |...+..|....+.|..|    ++++++.+.
T Consensus       117 ~al~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d----~~~l~~~~~  177 (410)
T PRK06290        117 PALAMLPSCFI--NPGDVTLMTVPGYPVTGTHTKYY-------------GGEVYNLPLLEENNFLPD----LDSIPKDIK  177 (410)
T ss_pred             HHHHHHHHHhC--CCCCEEEEeCCCCccHHHHHHHc-------------CCEEEEEecCCCcCCcCC----HHHHHHhhc
Confidence            99998887443  35678999999998765444322             233333332222223223    455555553


Q ss_pred             ccCCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCC-CCEE--Eee
Q 013235          249 FGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVV-PDIV--TMA  323 (447)
Q Consensus       249 ~~~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~-pDiv--t~s  323 (447)
                      .    ++.++++. | ++++|.+. +.+.+++|.++|++||++||+||+|..|...+ ..-.+ +..+.. .+|+  +||
T Consensus       178 ~----~~k~i~l~nP-~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfS  250 (410)
T PRK06290        178 E----KAKLLYLNYP-NNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLS  250 (410)
T ss_pred             c----cceEEEEECC-CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeech
Confidence            2    34455555 6 67777765 78889999999999999999999998874433 11111 111111 1233  699


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      |.++ .|+|+|++++++++++.+.......+.+.+.+++.++.+.|+.-+ -+++.+++++..+++.+.|++    +++ 
T Consensus       251 K~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-  325 (410)
T PRK06290        251 KAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNE----VGF-  325 (410)
T ss_pred             hhcCCchhheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHh----CCC-
Confidence            9997 799999999999999887653333334444567777767664210 012333344444444444443    332 


Q ss_pred             eeEee-cceeEEEEEeeCCC-CCCCCHHHHHHHHHHHHhCCceee
Q 013235          402 GDVRG-RGFLLGVEFVTDRQ-LKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       402 ~~vrg-~Gl~~giel~~~~~-~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .-.+. .|+++++++.+... ....  ....++++.|+++|+++.
T Consensus       326 ~~~~p~g~f~l~v~lp~~~~~~~~~--~~~~~~~~~Ll~~~~v~~  368 (410)
T PRK06290        326 KAEMPGGTFYLYVKAPKGTKSGIKF--ENAEEFSQYLIKEKLIST  368 (410)
T ss_pred             eecCCCeeeEEEEECCCccccCCCC--CCHHHHHHHHHHhCCEEE
Confidence            22223 35666777742210 0000  124578999999876553

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.83  E-value=1.8e-18  Score=173.44  Aligned_cols=303  Identities=13%  Similarity=0.065  Sum_probs=182.1

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCc-eEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLK-VVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~-~v~~~~sGseA~  171 (447)
                      +.+||..|...  ++ ..|++.+++.+.....    ..|+++ ...+|.+.+++++    .  .+.+ +|++++++++|+
T Consensus         1 ~~~~~~~g~p~--~~-~~~~~~~~~~~~~~~~----~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai   73 (350)
T TIGR03537         1 RLFDFGTGDPK--EP-TPPFIRKALIDAVPEV----SQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAI   73 (350)
T ss_pred             CeEeccCCCCC--CC-CCHHHHHHHHHHHhcc----CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHH
Confidence            46788888753  44 4788999988765432    223332 2344555555443    2  3344 799999999999


Q ss_pred             HHHHHHHHhhcC--CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          172 ELAIMMARLYTG--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       172 e~Aik~ar~~t~--~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ..++..... .|  ++.|++.+++|.+....+...             |+..++.|......|..|    .+++++.+..
T Consensus        74 ~~~~~~~~~-~g~~~d~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~~  135 (350)
T TIGR03537        74 FHFPLVFID-PEEDRRRVIFGTPGYPVYERGALFA-------------GGEPTAVKLKKEDGFLLR----LEKVEKSILE  135 (350)
T ss_pred             HHHHHHHcC-CCCCCceEEEcCCCCcchHHHHHhc-------------CCEEEEcccCcccCCccC----HHHHHHhhhh
Confidence            888764432 12  268999999998766654332             333444433222233334    5666666543


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeeccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGI  326 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~l  326 (447)
                          ++.++++.+.++++|.+. +.+.+++|.++|++||+++|+||+|..+...+ ........+. +.++   ++||.+
T Consensus       136 ----~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~-~~~i~~~s~SK~~  208 (350)
T TIGR03537       136 ----ETKIVWINYPHNPTGATA-PRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVGI-ENVLAFHSLSKRS  208 (350)
T ss_pred             ----ccEEEEEeCCCCCcCccc-CHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcCc-CCEEEEeeccccc
Confidence                344555555567777654 78889999999999999999999997653322 2211111121 2233   589999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                      | .|+++|++++++++.+.+.......+.+.+++..+++.+.|.   ++++.++.++.-+..++.+.+..++++......
T Consensus       209 g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~  285 (350)
T TIGR03537       209 GMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYP  285 (350)
T ss_pred             CCccccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            6 699999999999988877643222334455566677766663   233333322222222333333333333211123


Q ss_pred             ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..|+++++++.+.        ....++++.|.++||++.+
T Consensus       286 ~g~~~~~~~~~~~--------~~~~~l~~~L~~~gv~v~~  317 (350)
T TIGR03537       286 DATFYLWVKVPSG--------IDAKDYALRLLENGIVVAP  317 (350)
T ss_pred             CeEEEEEEECCCC--------CCHHHHHHHHHHCCEEEcC
Confidence            3467788887321        1135788999999999874

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.83  E-value=4.8e-19  Score=176.22  Aligned_cols=296  Identities=19%  Similarity=0.167  Sum_probs=185.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCC------CCceEEEcCCHHHHHHHHHHHHHhhcCC
Q 013235          111 VCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG------NLKVVFFTNSGTEANELAIMMARLYTGC  184 (447)
Q Consensus       111 ~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~------~~~~v~~~~sGseA~e~Aik~ar~~t~~  184 (447)
                      .++. .+|.+..++.+ ...........+.....++++.+++.+..      ..+.++++++|++|+..+++.+..  .+
T Consensus         8 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~g   83 (350)
T cd00609           8 PDFP-PPPEVLEALAA-AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN--PG   83 (350)
T ss_pred             CCCC-CCHHHHHHHHH-HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC--CC
Confidence            3555 45666666554 11111111112233444555555554422      256799999999999999986643  46


Q ss_pred             CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc
Q 013235          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (447)
Q Consensus       185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~  264 (447)
                      ++|++.+++|++....+....           ..+..++.  ...+.+..+    .+.++..+    ..++++|++++.+
T Consensus        84 ~~vl~~~~~~~~~~~~~~~~~-----------~~~~~i~~--~~~~~~~~~----~~~~~~~~----~~~~~~v~i~~~~  142 (350)
T cd00609          84 DEVLVPDPTYPGYEAAARLAG-----------AEVVPVPL--DEEGGFLLD----LELLEAAK----TPKTKLLYLNNPN  142 (350)
T ss_pred             CEEEEcCCCchhHHHHHHHCC-----------CEEEEEec--ccccCCccC----HHHHHhhc----CccceEEEEECCC
Confidence            788888888876554333221           01222222  111111000    12233322    2478899999988


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc----ccccCCCCCEEEeecccc-CCccccccccCH
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG----FEAHGVVPDIVTMAKGIG-NGIPLGAVVTTP  339 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~----~~~~gv~pDivt~sK~lg-~G~pigav~~~~  339 (447)
                      +++|.+. |.+.+++|.++|+++|+++|+||+++++...+ ....    ....+....+.+++|.++ +|+++|++++++
T Consensus       143 ~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~  220 (350)
T cd00609         143 NPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDG-EPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPP  220 (350)
T ss_pred             CCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCC-cccccccCcCccCcEEEEeecccccCCcccceEEEecCH
Confidence            8889866 67789999999999999999999999987666 3321    122222222336899999 889999999999


Q ss_pred             -HHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeecceeEEEEE
Q 013235          340 -EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLLGVEF  415 (447)
Q Consensus       340 -~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~Gl~~giel  415 (447)
                       ++.+.+.......+++.++.++.++.+.|+..+  -+.+.++++++.+++++.|++.    +... .....|.++.+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~g~~~~~~~  296 (350)
T cd00609         221 EELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKEL----GPLVVVKPSGGFFLWLDL  296 (350)
T ss_pred             HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCccEEEEEec
Confidence             888888765555678888888888888887652  2345566666677777766654    2222 3456688888877


Q ss_pred             eeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          416 VTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       416 ~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ...        .....+.+.|.+.||.+..
T Consensus       297 ~~~--------~~~~~~~~~l~~~gi~i~~  318 (350)
T cd00609         297 PEG--------DDEEFLERLLLEAGVVVRP  318 (350)
T ss_pred             CCC--------ChHHHHHHHHHhCCEEEec
Confidence            432        1134456667777998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.83  E-value=1.9e-18  Score=175.85  Aligned_cols=309  Identities=14%  Similarity=0.138  Sum_probs=185.5

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC------CCCCceEEEcCCHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEA  170 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~sGseA  170 (447)
                      +...+||..|....  . .+|.+.+++.+.+....   ..|. .....+|.+.|++++      ....+++++++++++|
T Consensus        30 ~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a  103 (393)
T PRK05764         30 GRDVISLGAGEPDF--D-TPEHIKEAAIEALDDGK---TKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQA  103 (393)
T ss_pred             cCCEEEeCCCCCCC--C-CCHHHHHHHHHHHhcCC---CCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHH
Confidence            34688988887643  3 57899999888776431   1232 223455555555553      2334679999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..++....  ..++.|++.+++|.+....+...             |...+..|......|..|    .+++++.+.  
T Consensus       104 ~~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~--  162 (393)
T PRK05764        104 LYNAFMALL--DPGDEVIIPAPYWVSYPEMVKLA-------------GGVPVFVPTGEENGFKLT----VEQLEAAIT--  162 (393)
T ss_pred             HHHHHHHhc--CCCCEEEecCCCCcchHHHHHHc-------------CCEEEEEecCcccCCcCC----HHHHHHhhC--
Confidence            999887653  25678999999987654433221             222222222111123233    456666653  


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc--cCCCC-CEE--Eeecc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA--HGVVP-DIV--TMAKG  325 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~--~gv~p-Div--t~sK~  325 (447)
                       ++..+.++..| ++++|.+. +.+.+++|.++|++||+++|+||+|..|...|..+.....  .+..+ +++  +|||.
T Consensus       163 -~~~~~v~~~~p-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  239 (393)
T PRK05764        163 -PKTKALILNSP-SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKA  239 (393)
T ss_pred             -ccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCccc
Confidence             22334455555 55667665 5678999999999999999999999877544422222211  12222 232  59999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~----l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      ++ .|+++|++++++++++.+.......+++.+++++.++.+.|+.  .++    +.+..+++.+.+++.|+    +++.
T Consensus       240 ~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~----~~~g  313 (393)
T PRK05764        240 YAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLMVDGLN----EIPG  313 (393)
T ss_pred             ccCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHh----hCCC
Confidence            99 7999999999999988876433334556788888888887752  122    23333334444444444    3322


Q ss_pred             eeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       401 i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +.-.++. |.++++.+.....   +......++.+.|+ ++||.+.+
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~  357 (393)
T PRK05764        314 LECPKPEGAFYVFPNVSKLLG---KSITDSLEFAEALLEEAGVAVVP  357 (393)
T ss_pred             CcccCCCcceEEEEecccccc---cccCCHHHHHHHHHHhCCEEEcc
Confidence            2223344 4677777743210   00001356777775 57999865

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.83  E-value=2.6e-18  Score=174.38  Aligned_cols=311  Identities=12%  Similarity=0.043  Sum_probs=183.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCc-eEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLK-VVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~-~v~~~~sGs  168 (447)
                      .|..++||..|..  .++ .++.+.+++.+.+....  ...|+.+ ...+|.+.+++++    .  ...+ .|+++++++
T Consensus        27 ~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~  101 (383)
T TIGR03540        27 EGVDVISLGIGDP--DLP-TPKHIVEALCKAAENPE--NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSK  101 (383)
T ss_pred             cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcH
Confidence            3567788888765  345 46889999888765421  1233322 2345555555543    2  2233 688999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +++..+++...  .+++.|++.+++|.+....+...             |...++.|......+..|    .+++++.+.
T Consensus       102 ~~l~~~~~~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------G~~v~~v~~~~~~g~~~d----~~~l~~~~~  162 (383)
T TIGR03540       102 EGIAHIPLAFV--NPGDIVLVPDPGYPVYRIGTLFA-------------GGEPYEMPLKEENGFLPD----FDAIPEDIA  162 (383)
T ss_pred             HHHHHHHHHhC--CCCCEEEEeCCCCcchHHHHHhc-------------CCEEEEEecCcccCCccC----HHHHHhhcc
Confidence            99999987542  35678999999998765544332             233333332111122223    455655543


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCCEEEeec
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMAK  324 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pDivt~sK  324 (447)
                         + ++.++++...++++|.+. +.+.+++|.++|++||+++|+||+|..+...+.....+...    +....+-+|||
T Consensus       163 ---~-~~~~v~i~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK  237 (383)
T TIGR03540       163 ---K-KAKLMFINYPNNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSK  237 (383)
T ss_pred             ---c-cceEEEEeCCCCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEeccc
Confidence               2 344555443366777765 78889999999999999999999998775443111111111    12223447999


Q ss_pred             ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      .+| .|+|+|++++++++++.+.......+.+.+.+.+.++.+.|+..  +++.+..++.-+..++.+.+..+++++...
T Consensus       238 ~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  315 (383)
T TIGR03540       238 TYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRDLLLEALKKIGIDVE  315 (383)
T ss_pred             ccCCccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEec
Confidence            997 79999999999999887764322223344566777776666421  233333222222223333333334442211


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      ....|+++++++.+.        ....+++++|+ ++||++.+.
T Consensus       316 ~~~~~~~~~~~l~~~--------~~~~~~~~~ll~~~gi~v~~g  351 (383)
T TIGR03540       316 KPKATFYVWVPVPEG--------YTSAEFAARLLEETGVVVTPG  351 (383)
T ss_pred             CCCcceEEEEECCCC--------CCHHHHHHHHHHHCCEEEecc
Confidence            222467788887321        11356888875 679998753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.83  E-value=3.1e-18  Score=174.52  Aligned_cols=306  Identities=13%  Similarity=0.071  Sum_probs=183.5

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCc-eEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLK-VVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~-~v~~~~sGse  169 (447)
                      |..+|||..|..   .+..++.+.+++.+.+....  ...|+. ....+|.+.+++++    +  .+.+ .+++++++++
T Consensus        34 g~~~i~l~~g~p---~~~~p~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~  108 (394)
T PRK05942         34 GLDLIDLGMGNP---DGAAPQPVIEAAIAALADPQ--NHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKE  108 (394)
T ss_pred             CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCC--CccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHH
Confidence            556789987643   23345678888877765321  123332 22345555555543    2  2344 5888999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..++...  ...++.|++.+++|.+....+...             |...++.|......|..|    .+++++.+. 
T Consensus       109 al~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~-  168 (394)
T PRK05942        109 GLTHLALAY--VNPGDVVLVPSPAYPAHFRGPLIA-------------GAQIYPIILKPENDWLID----LSSIPEEVA-  168 (394)
T ss_pred             HHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHHc-------------CCEEEEeecCCccCCccC----HHHHHHhcc-
Confidence            999988754  235688999999997755433221             233333332222233334    455665553 


Q ss_pred             cCCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---cccccc-cCCCCCEEEeec
Q 013235          250 GTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEA-HGVVPDIVTMAK  324 (447)
Q Consensus       250 ~~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~-~gv~pDivt~sK  324 (447)
                        + ++.++++. | ++++|.+. +.+.+++|.++|+++|+++|+||+|..|...+..   +..+.. .+....+-+|||
T Consensus       169 --~-~~k~i~l~~P-~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK  243 (394)
T PRK05942        169 --Q-QAKILYFNYP-SNPTTATA-PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSK  243 (394)
T ss_pred             --c-cceEEEEcCC-CCCCCCcC-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchh
Confidence              2 44455554 6 66777664 7888999999999999999999999877544421   111111 112223446999


Q ss_pred             ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      .++ .|+++|++++++++++.+........++.+.+++.++.++|+..++  ++..+++++..+++.+.|++    +++.
T Consensus       244 ~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~  319 (394)
T PRK05942        244 TYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE----LGWN  319 (394)
T ss_pred             ccCChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCe
Confidence            997 7999999999999998887533334566677777777777753221  12334444444445554443    3321


Q ss_pred             eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeec
Q 013235          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFS  445 (447)
Q Consensus       402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~  445 (447)
                      ......|+++++++...     .+   ..++..++ .++||++.+
T Consensus       320 ~~~~~~~~f~~~~~~~~-----~~---~~~~~~~~l~~~gV~v~~  356 (394)
T PRK05942        320 IPPTKATMYLWVPCPVG-----MG---STDFALNVLQKTGVVVTP  356 (394)
T ss_pred             ecCCCeeeEEEEECCCC-----CC---HHHHHHHHHHHCCEEEeC
Confidence            11233466888887321     01   23455544 578999865

>PRK03321 putative aminotransferase; Provisional

Probab=99.82  E-value=1.3e-18  Score=174.59  Aligned_cols=294  Identities=16%  Similarity=0.128  Sum_probs=189.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      .+|||..|..  .+| ..|.+.+|+.+.+..+    ..|+.....++.+.+++++..+.++|+++++.++++..++... 
T Consensus        23 ~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~----~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~-   94 (352)
T PRK03321         23 GAIKLSSNET--PFG-PLPSVRAAIARAAAGV----NRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQAT-   94 (352)
T ss_pred             cceeccCCCC--CCC-CCHHHHHHHHHHHHhc----CcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHh-
Confidence            4799887766  355 5678999988776543    2355567788999999998766678999988888888777643 


Q ss_pred             hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                       ..+++.|++..++|....... ..            .|...+..|...  .++.|    .+++++.+..    ++.+++
T Consensus        95 -~~~gd~Vli~~p~y~~~~~~~-~~------------~g~~~~~v~~~~--~~~~~----~~~l~~~~~~----~~~~v~  150 (352)
T PRK03321         95 -AGPGDEVIFAWRSFEAYPILV-QV------------AGATPVQVPLTP--DHTHD----LDAMAAAITD----RTRLIF  150 (352)
T ss_pred             -cCCCCEEEeCCCCHHHHHHHH-HH------------cCCEEEEccCCC--CCCCC----HHHHHHhhcc----CCCEEE
Confidence             235678888888774322111 11            133333333211  12233    5666666642    344555


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLG  333 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig  333 (447)
                      +...++++|.+.+    .+++.++|++  +++++|+||+|.+|...+....+.+.....++++   +|||.+| .|+|+|
T Consensus       151 l~~p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG  226 (352)
T PRK03321        151 VCNPNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVG  226 (352)
T ss_pred             EeCCCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhh
Confidence            5555677788875    5667777766  5999999999998865542112223333346666   5899998 799999


Q ss_pred             ccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       334 av~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      ++++++++++.+...  ..+++.+++++.++.++|+.  .+.+.++.++..+. ++.+.+...+++. ...+..|+++++
T Consensus       227 ~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~~-r~~~~~~L~~~~~-~~~~~~g~~i~i  300 (352)
T PRK03321        227 YAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAA--EDELLERVDAVVAE-RDRVRAALRAAGW-TVPPSQANFVWL  300 (352)
T ss_pred             hhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHH-HHHHHHHHHHCCC-ccCCCCCCEEEE
Confidence            999999999988743  35678899999988888852  23344444333222 2223333333332 223446889888


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+..+          ..++.+.|.++||++.+
T Consensus       301 ~l~~~----------~~~~~~~l~~~gI~v~~  322 (352)
T PRK03321        301 PLGER----------TADFAAAAAEAGVVVRP  322 (352)
T ss_pred             eCCCC----------HHHHHHHHHHCCEEEEc
Confidence            87311          35788899999999864

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.82  E-value=2.1e-18  Score=176.13  Aligned_cols=310  Identities=15%  Similarity=0.114  Sum_probs=186.1

Q ss_pred             CCeEEEecCCcccc--cCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC-----CCCceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATV--CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-----GNLKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~--~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~-----~~~~~v~~~~sGse  169 (447)
                      |+.+++|..|....  .++ .++.+.+++.+.+... +. ..| +.....+|.+.+++++.     ...++|++++++++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~-~~-~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~  106 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSG-KY-NGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSH  106 (401)
T ss_pred             CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhcc-CC-CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHH
Confidence            46778888776532  344 5688999988877652 11 123 34445667777776653     34567999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..++.....  +++.|++.+++|......+...             |+..++.+......++.|    .+.+++.+..
T Consensus       107 al~~~~~~l~~--~gd~v~i~~P~y~~~~~~~~~~-------------g~~v~~~~~~~~~~~~~d----~~~l~~~~~~  167 (401)
T TIGR01264       107 AIEMCIAALAN--AGQNILVPRPGFPLYETLAESM-------------GIEVKLYNLLPDKSWEID----LKQLESLIDE  167 (401)
T ss_pred             HHHHHHHHhCC--CCCEEEEeCCCChhHHHHHHHc-------------CCEEEEeecCCccCCCCC----HHHHHHHhcc
Confidence            99999985532  5678999999997554333221             233323222111223344    4566665542


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC--EE---Eeec
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD--IV---TMAK  324 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD--iv---t~sK  324 (447)
                         +..+.++..| ++++|.+. +.+.+++|.++|+++|+++|+||+|.+|...|..+..+.  ...++  ++   +|||
T Consensus       168 ---~~~~v~~~~p-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~SfSK  240 (401)
T TIGR01264       168 ---KTAALIVNNP-SNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA--SLSSTVPILSCGGLAK  240 (401)
T ss_pred             ---CceEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH--HcCCCCcEEEEccCcc
Confidence               1223344455 55667654 678899999999999999999999998865552121211  12232  33   6999


Q ss_pred             ccc-CCccccccccCH------HHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHH
Q 013235          325 GIG-NGIPLGAVVTTP------EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTA  393 (447)
Q Consensus       325 ~lg-~G~pigav~~~~------~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~  393 (447)
                      .++ .|+|+|++++++      ++++.+.... ..+++.|++++.++.+.|+.- .+++.    +.+++..+++.+.|+ 
T Consensus       241 ~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~~l~~~L~-  317 (401)
T TIGR01264       241 RWLVPGWRLGWIIIHDRRGILRDIRDGLVKLS-QRILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAMLCYGALA-  317 (401)
T ss_pred             cCCCccceEEEEEecCcchhHHHHHHHHHHHh-hccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            966 799999999863      3444333211 124566788888887777531 12333    333333334444443 


Q ss_pred             HHHhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          394 LKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                         +++.+. ..+..|+++++++....   .|......++++.|+ ++||++.+
T Consensus       318 ---~~~~~~~~~p~~g~f~~~~~~~~~---~~~~~~~~~~~~~l~~~~gI~v~p  365 (401)
T TIGR01264       318 ---AVPGLRPVMPSGAMYMMVGIEMEH---FPEFKNDVEFTERLVAEQSVFCLP  365 (401)
T ss_pred             ---hCCCCcccCCCeeeEEEEEecccc---cCCCCCHHHHHHHHHHhCCEEEeC
Confidence               332222 23556999999985310   011011356777876 78999875

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.82  E-value=2.8e-18  Score=174.27  Aligned_cols=305  Identities=13%  Similarity=0.077  Sum_probs=181.0

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCc-eEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLK-VVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~-~v~~~~sGse  169 (447)
                      |..++|+..|...  ++ .++.+.+++.+.+....  ...|+.+ ...+|.+.+++++    +  .+.+ .|++++++++
T Consensus        30 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~  104 (385)
T PRK09276         30 GVDVISLGIGDPD--LP-TPDHIIEAMCKAVEDPE--NHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKE  104 (385)
T ss_pred             CCCEEEecCCCCC--CC-CCHHHHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence            4557888887653  33 56788998888776421  1223322 2345555555543    2  2233 5888999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ++..+++...  ..++.|++.+++|.+....+...             |...+..|......|..|    .+++++.+. 
T Consensus       105 ~i~~~~~~~~--~~gd~Vl~~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~g~~~d----~~~l~~~~~-  164 (385)
T PRK09276        105 GIAHIPLAFV--NPGDVVLVPDPGYPVYKIGTIFA-------------GGEPYFMPLKEENGFLPD----LDAIPEDVA-  164 (385)
T ss_pred             HHHHHHHHhC--CCCCEEEEcCCCCcChHHHHHHc-------------CCEEEEEecCCCCCCcCC----HHHHHHhcc-
Confidence            9999987653  35688999999997665543322             222222222111122223    445555443 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---cccccc-cCCCCCEEEeecc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEA-HGVVPDIVTMAKG  325 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~-~gv~pDivt~sK~  325 (447)
                        . ++.++++...++++|.+. +.+.+++|.++|++||+++|+||+|..|...|..   +..++. .+....+.+|||.
T Consensus       165 --~-~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  240 (385)
T PRK09276        165 --K-KAKLMFINYPNNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKT  240 (385)
T ss_pred             --c-cceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhh
Confidence              2 344555553356677765 7888999999999999999999999887543311   111111 1222334479999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHhcCC
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN----NAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~----~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      +| .|+++|++++++++++.+.........+.+++...++.+.|+.  .+.+.+    .+++..+++.+.|++    +++
T Consensus       241 ~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~----~~~  314 (385)
T PRK09276        241 YNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEGLRK----LGL  314 (385)
T ss_pred             cCCcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHh----CCC
Confidence            97 7999999999999998876532222334556666677666642  123333    333334444444433    332


Q ss_pred             eeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          401 IGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       401 i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                       .-.. ..|+++++++.+.        ....+++++|+ ++||++.+.
T Consensus       315 -~~~~~~~~~~~~v~~~~~--------~~~~~l~~~ll~~~gi~v~~g  353 (385)
T PRK09276        315 -EVEPPKATFYVWAPVPKG--------YTSAEFATLLLDKAGVVVTPG  353 (385)
T ss_pred             -cccCCCcceEEEEECCCC--------CCHHHHHHHHHHhCCEEECCc
Confidence             2122 2366678877321        11356888876 579998753

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.82  E-value=5e-18  Score=173.07  Aligned_cols=306  Identities=12%  Similarity=0.043  Sum_probs=183.3

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-ccccccchHHHHHHHHHHHhCC---CCC-ceEEEcCCHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMP---GNL-KVVFFTNSGTEAN  171 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~~~~~~~~elae~L~~~~~---~~~-~~v~~~~sGseA~  171 (447)
                      .|+.+|||..|...  ++ .++.+.+++.+.+..... ....+..+....+++.+.+..+   .+. ++|++++++++|+
T Consensus        27 ~~~~~i~l~~~~p~--~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al  103 (396)
T PRK09147         27 ADLPPISLSIGEPK--HP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL  103 (396)
T ss_pred             cCCCeEecCCCCCC--CC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence            47889999887763  44 467888888776653311 1111122333444444444433   233 4799999999999


Q ss_pred             HHHHHHHHhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          172 ELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       172 e~Aik~ar~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      ..+++....- ..++.|++.+++|.+....+...             |...++.|......|+.|    .+++++.+.. 
T Consensus       104 ~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~vp~~~~~~~~~d----~~~l~~~~~~-  165 (396)
T PRK09147        104 FAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLA-------------GAEPYFLNCDPANNFAPD----FDAVPAEVWA-  165 (396)
T ss_pred             HHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhc-------------CCEEEEeccCccccCccC----HHHHHHHHhh-
Confidence            9988854321 11567999999997665443322             333333333222234444    4556554432 


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccc-cc---ccCC--CCCEE---
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWG-FE---AHGV--VPDIV---  320 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~-~~---~~gv--~pDiv---  320 (447)
                        +..+.+++.| ++++|.+. +++.+++|.++|++|+++||.||+|..|...+. .... ..   ..+.  .+.++   
T Consensus       166 --~~k~i~l~nP-~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  241 (396)
T PRK09147        166 --RTQLLFVCSP-GNPTGAVL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFH  241 (396)
T ss_pred             --ccEEEEEcCC-CCCcCccC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEe
Confidence              1234444555 66667665 788999999999999999999999988754331 1111 11   1111  12233   


Q ss_pred             Eeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHH
Q 013235          321 TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN----AHVVGSYLKERLTALK  395 (447)
Q Consensus       321 t~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~----~~~~g~~l~~~L~~l~  395 (447)
                      +|||.++ .|+++||+++++++++.+.......+++.+++.+.++.+.+.   ++++.++    +++..+.+.+.|++  
T Consensus       242 S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~--  316 (396)
T PRK09147        242 SLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPILAP--  316 (396)
T ss_pred             ccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHH--
Confidence            6999876 699999999999999877643333556778888888777763   2222222    22222233333322  


Q ss_pred             HhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       396 ~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                        + .....+..|+++++++..      .    ..++++.|+ ++||++.+
T Consensus       317 --~-~~~~~p~~g~f~~~~~~~------~----~~~~~~~ll~~~gv~v~p  354 (396)
T PRK09147        317 --V-LDVQLPDAGFYLWAKVPG------D----DTEFARRLYADYNVTVLP  354 (396)
T ss_pred             --h-cCCCCCCeeEEEEEECCC------C----HHHHHHHHHHhCCEEEeC
Confidence              2 111235568999998731      1    245777775 67998864

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.82  E-value=2.6e-18  Score=176.08  Aligned_cols=322  Identities=12%  Similarity=0.036  Sum_probs=191.7

Q ss_pred             EEEecCCCeEEEecCCccccc--CCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhCC------------C
Q 013235           92 YLFDENGRRYLDAFGGIATVC--CGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP------------G  156 (447)
Q Consensus        92 ~l~d~dG~~ylD~~~g~~~~~--lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~~------------~  156 (447)
                      ++.+..|+.+|||..|.....  +- .++.+.+++.+.++..  ....|+.+ ...+|.+.|++++.            .
T Consensus        26 ~~~~~~~~~~i~l~~g~p~~~~~~~-p~~~~~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~  102 (412)
T PTZ00433         26 AKPSPSPKSIIKLSVGDPTLDGNLL-TPAIQTKALVEAVDSQ--ECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTI  102 (412)
T ss_pred             hccCCCCCCeeecCCcCCCCcCCCC-CCHHHHHHHHHHhhcC--CCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCC
Confidence            345578899999998876421  23 4678999888877642  11234433 35566666666542            3


Q ss_pred             CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCCh
Q 013235          157 NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG  236 (447)
Q Consensus       157 ~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~  236 (447)
                      +.++|++++++++|+..+++...  .+++.|++..++|......+...             |+..+..|......|+.| 
T Consensus       103 ~~~~i~it~G~~~al~~~~~~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d-  166 (412)
T PTZ00433        103 KKDNVVLCSGVSHAILMALTALC--DEGDNILVPAPGFPHYETVCKAY-------------GIEMRFYNCRPEKDWEAD-  166 (412)
T ss_pred             ChhhEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCcccHHHHHHHc-------------CCEEEEEecCccccCcCC-
Confidence            45789999999999999998653  25678999999998765443222             222222222111223334 


Q ss_pred             HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCC
Q 013235          237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV  316 (447)
Q Consensus       237 ~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~  316 (447)
                         .+++++.+..   +..+.++..| ++++|.+. +.+-+++|.++|++||+++|+||+|..|-..+..+.....+.-.
T Consensus       167 ---~~~l~~~~~~---~~~~i~~~~p-~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  238 (412)
T PTZ00433        167 ---LDEIRRLVDD---RTKALIMTNP-SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTT  238 (412)
T ss_pred             ---HHHHHHHhcc---CceEEEEeCC-CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCC
Confidence               4566665542   2223444455 56677655 67889999999999999999999999885544222222112111


Q ss_pred             CCEE---Eeecccc-CCcccccccc------CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013235          317 PDIV---TMAKGIG-NGIPLGAVVT------TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY  386 (447)
Q Consensus       317 pDiv---t~sK~lg-~G~pigav~~------~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~  386 (447)
                      .+++   +|||.++ .|+++||+++      .+++++.+.... ..+++.|++++.++.+.|+.- .+.+.++.++.-+.
T Consensus       239 ~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~  316 (412)
T PTZ00433        239 VPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEE  316 (412)
T ss_pred             CceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence            1233   5899996 7999999996      245666654321 234677888888888777521 12333333322222


Q ss_pred             HHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       387 l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      -++.|.+..+++..+.-+ +..|+++++++....-....   ...++++.|+ ++||++.+
T Consensus       317 ~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~---~~~~~~~~ll~~~gV~v~p  374 (412)
T PTZ00433        317 GAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIK---SDVEFYEKLLEEENVQVLP  374 (412)
T ss_pred             HHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCC---CHHHHHHHHHHhcCEEEeC
Confidence            233333333333222222 34488899887421000000   1356888887 47999875

>PRK09105 putative aminotransferase; Provisional

Probab=99.82  E-value=2.5e-18  Score=173.73  Aligned_cols=293  Identities=15%  Similarity=0.109  Sum_probs=185.9

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      +.++|+..|..  +++ .+|.+.+++.+.+...    ..|+.+...+|.+.+++.+..+.++|++++++++++..++...
T Consensus        43 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~----~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l  115 (370)
T PRK09105         43 EGAVFLNANEC--PLG-PSPAARDAAARSAALS----GRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF  115 (370)
T ss_pred             CCcEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence            45667666654  456 6789999998876543    2356556789999999998777789999999999999998754


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                      .  ..+++|++.+++|.+....+...             |...+..|...  .|..|    .+++++.    .++....+
T Consensus       116 ~--~~gd~Vli~~P~y~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~----~~~~~~v~  170 (370)
T PRK09105        116 T--SPTAGLVTADPTYEAGWRAADAQ-------------GAPVAKVPLRA--DGAHD----VKAMLAA----DPNAGLIY  170 (370)
T ss_pred             c--CCCCEEEEeCCChHHHHHHHHHc-------------CCeEEEecCCC--CCCCC----HHHHHhc----CCCCCEEE
Confidence            2  35678999999997665443322             22233332211  22233    3444433    12234456


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGA  334 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~piga  334 (447)
                      +++| ++++|.+. +.+.++++.+.|+ +|+++|+||+|..|+... ..  .+..+..++++   +|||.+| .|+|+|+
T Consensus       171 l~nP-~NPTG~~~-~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~~-s~--~~~~~~~~~vi~~~SfSK~~g~~GlRiG~  244 (370)
T PRK09105        171 ICNP-NNPTGTVT-PRADIEWLLANKP-AGSVLLVDEAYIHFSDAP-SV--VDLVAQRKDLIVLRTFSKLYGMAGMRLGL  244 (370)
T ss_pred             EeCC-CCCCCcCc-CHHHHHHHHHhCC-CCcEEEEECchHHhccCc-ch--HHHHhhCCCEEEEecccHhhcCCccceee
Confidence            6777 56667665 6667777777654 599999999998775311 11  12223345655   5899998 7999999


Q ss_pred             cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                      +++++++++.+...   ..+..+..++.++.++|+   ++++.+..++.-+..++.+.+..++++. .-++..|.|+.++
T Consensus       245 ~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~~~~~f~~~~  317 (370)
T PRK09105        245 AAARPDLLAKLARF---GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAWLKKKGY-KCTPSQANCFMVD  317 (370)
T ss_pred             eecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-CcCCCCCcEEEEe
Confidence            99999999887643   334466677777777774   2344433333333333334333333332 2234566676665


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +..          ...++++.|+++||+++..
T Consensus       318 ~~~----------~~~~l~~~L~~~gI~v~~~  339 (370)
T PRK09105        318 VKR----------PAKAVADAMAKQGVFIGRS  339 (370)
T ss_pred             CCC----------CHHHHHHHHHHCCcEEecC
Confidence            521          1357889999999998643

>PRK09082 methionine aminotransferase; Validated

Probab=99.82  E-value=3.2e-18  Score=173.93  Aligned_cols=307  Identities=13%  Similarity=0.094  Sum_probs=187.7

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccccchHHHHHHHHHHHhCCCC--C-ceEEEcCCHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKMPGN--L-KVVFFTNSGTEANEL  173 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~~~~~~elae~L~~~~~~~--~-~~v~~~~sGseA~e~  173 (447)
                      +.+|||..|...  ++ .+|.+.+++.+.+.....  ....+..+...++++.+.+.+...  . +++++++++++|+..
T Consensus        30 ~~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~  106 (386)
T PRK09082         30 HGAINLSQGFPD--FD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA  106 (386)
T ss_pred             CCEEEecCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence            357899887653  33 478899988887654211  111122344556666666655432  2 368999999999999


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      +++...  .+++.|++.+++|.+........             |...+..|.... .|+.|    .+++++.+.   + 
T Consensus       107 ~~~~~~--~~gd~Vli~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~-~~~~d----~~~l~~~~~---~-  162 (386)
T PRK09082        107 AILALV--RPGDEVIVFDPSYDSYAPAIELA-------------GGRAVRVALQPP-DFRVD----WQRFAAAIS---P-  162 (386)
T ss_pred             HHHHHc--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCcc-cccCC----HHHHHHhcC---c-
Confidence            997543  35678999999887654333221             222222222111 13334    456666654   2 


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEE---Eeecccc-C
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIV---TMAKGIG-N  328 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDiv---t~sK~lg-~  328 (447)
                      ++.++++...++++|.+. +++.+++|.++|++||+++|+||+|..+-..+...-.. +..+..+.++   +|||.+| .
T Consensus       163 ~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~  241 (386)
T PRK09082        163 RTRLIILNTPHNPSGTVW-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT  241 (386)
T ss_pred             cceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccch
Confidence            345555555567777665 67789999999999999999999998765433211111 2222223333   6899997 7


Q ss_pred             CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       329 G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                      |+|+|++++++++++.+........++.+++++.++.+.|+.  .++..    +.+++..+.+.+.|++    +++....
T Consensus       242 G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~  315 (386)
T PRK09082        242 GWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAALAN----SRFKLLP  315 (386)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHh----CCCcccC
Confidence            999999999999998877644446677888888877666642  22223    3334444455554444    3321112


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~  445 (447)
                      ...|+++++++.+-..   .   ...++++.| .+.||++.+
T Consensus       316 ~~g~~~~~~~~~~~~~---~---~~~~~~~~l~~~~~v~v~p  351 (386)
T PRK09082        316 CEGTYFQLVDYSAISD---L---DDVEFCQWLTREHGVAAIP  351 (386)
T ss_pred             CCeeEEEEEeccccCC---C---CHHHHHHHHHHhCCEEEeC
Confidence            3347788888742100   1   135677776 577998865

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=2e-18  Score=172.12  Aligned_cols=294  Identities=13%  Similarity=0.154  Sum_probs=188.9

Q ss_pred             eecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC---CCCceEEE
Q 013235           87 DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFF  163 (447)
Q Consensus        87 ~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~---~~~~~v~~  163 (447)
                      +++|.+-+...|+..||+..|..  .++ .+|.+++++.+.+...  ....|+.+...+|.+.+++++.   .+.++|++
T Consensus         7 ~~~~~~~~~~~~~~~i~l~~~~~--~~~-~p~~~~~~~~~~~~~~--~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~i   81 (335)
T PRK14808          7 IAKRAYPYETEKRDRTYLALNEN--PFP-FPEDLVDEVFRRLNSD--TLRIYYDSPDEELIEKILSYLDTDFLSKNNVSV   81 (335)
T ss_pred             hhccCcCCCCCCCceeEecCCCC--CCC-CCHHHHHHHHHHhhhh--hhhcCCCCChHHHHHHHHHHhCCCCCCcceEEE
Confidence            45666666778899999988765  566 6789999998876542  1233555667889999998875   45678999


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235          164 TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (447)
Q Consensus       164 ~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (447)
                      +++++|++..+++..      +.|++.+++|.+....+...             |...+..|...  .+..+      +.
T Consensus        82 t~Ga~~~i~~~~~~~------d~v~v~~P~y~~~~~~~~~~-------------g~~~~~v~~~~--~~~~~------~~  134 (335)
T PRK14808         82 GNGADEIIYVMMLMF------DRSVFFPPTYSCYRIFAKAV-------------GAKFLEVPLTK--DLRIP------EV  134 (335)
T ss_pred             cCCHHHHHHHHHHHh------CcEEECCCCHHHHHHHHHHc-------------CCeEEEecCCC--cCCCC------hh
Confidence            999999999998743      56899999998776655443             22333333211  11111      11


Q ss_pred             HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccccCCCCCEE--
Q 013235          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIV--  320 (447)
Q Consensus       244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~~gv~pDiv--  320 (447)
                       . +.   + ....++..|.+ ++|.+..    .+++.+++ ++++++|+||+|..|.  +..+.. .+.+   +.++  
T Consensus       135 -~-~~---~-~~~i~i~nP~N-PTG~~~s----~~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~---~~vi~~  197 (335)
T PRK14808        135 -N-VG---E-GDVVFIPNPNN-PTGHVFE----REEIERIL-KTGAFVALDEAYYEFH--GESYVDLLKKY---ENLAVI  197 (335)
T ss_pred             -H-cc---C-CCEEEEeCCCC-CCCCCcC----HHHHHHHH-hcCCEEEEECchhhhc--CCchHHHHHhC---CCEEEE
Confidence             1 11   1 23455555554 4555554    44556666 5899999999999884  212221 1222   3444  


Q ss_pred             -Eeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235          321 -TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY  398 (447)
Q Consensus       321 -t~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~  398 (447)
                       +|||.++ .|+|+|++++++++++.+....  .+++.+.++..++.++|+..  +.+.++.+...+. ++.+.+..+++
T Consensus       198 ~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~  272 (335)
T PRK14808        198 RTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHR--EIFEERTKFIVEE-RERMKSALREM  272 (335)
T ss_pred             EechhhccCcccceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCH--HHHHHHHHHHHHH-HHHHHHHHHHC
Confidence             6999999 8999999999999999886433  35677888888888887632  1222222222222 33343333334


Q ss_pred             CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       399 ~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      + +.-..+.|.|+++++...         ...++.+.|+++||+|+
T Consensus       273 g-~~~~~~~g~f~~~~l~~~---------~~~~~~~~l~~~Gi~V~  308 (335)
T PRK14808        273 G-YRITDSRGNFVFIFMEKE---------EKERLLEHLRAKNIAVR  308 (335)
T ss_pred             C-CEECCCCCeEEEEeCCCc---------cHHHHHHHHHHCCeEEE
Confidence            4 333456899998887421         13568889999999987

>PRK07777 aminotransferase; Validated

Probab=99.82  E-value=7.9e-18  Score=171.08  Aligned_cols=306  Identities=15%  Similarity=0.137  Sum_probs=185.2

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHH----hCCC--CCc-eEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALAS----KMPG--NLK-VVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~----~~~~--~~~-~v~~~~sGseA~  171 (447)
                      ..+||..|.....   .++.+.+++.+.+...   ...|. .....+|.+.+++    .++.  ..+ +|++++||++|+
T Consensus        25 ~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al   98 (387)
T PRK07777         25 GAVNLGQGFPDED---GPPEMLEAAQEAIAGG---VNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAI   98 (387)
T ss_pred             CeEEccCCCCCCC---CCHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence            5688888876442   3567788777766542   12233 2234455555554    3332  233 699999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcC-CCCCCChHHHHHHHHHHHHcc
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~  250 (447)
                      .+++...  ..+++.|++..++|++........             |...+..|.... ..|..|    .+++++.+.. 
T Consensus        99 ~~~~~~~--~~~gd~vli~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d----~~~l~~~~~~-  158 (387)
T PRK07777         99 AAAVLGL--VEPGDEVLLIEPYYDSYAAVIAMA-------------GAHRVPVPLVPDGRGFALD----LDALRAAVTP-  158 (387)
T ss_pred             HHHHHHh--cCCCCEEEEeCCCchhhHHHHHHC-------------CCEEEEeecCCccCCCcCC----HHHHHHhcCc-
Confidence            9988743  235678999999998765333221             222222221111 123234    4566665532 


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCCC-CEE--Eeeccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVP-DIV--TMAKGI  326 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~p-Div--t~sK~l  326 (447)
                         ++.+|++...++++|.+. +++.+++|.++|++|++++|+||+|.+|...+.....+..+ +... +++  +|||.+
T Consensus       159 ---~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  234 (387)
T PRK07777        159 ---RTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTF  234 (387)
T ss_pred             ---ccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhc
Confidence               455666666678888766 67889999999999999999999998876544222122211 2111 232  699999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      | .|+++|++++++++++.+.......++..++..+.++...|+.-+  .+.+.+.++++.+++.+.|+++    +.-..
T Consensus       235 g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~  310 (387)
T PRK07777        235 NVTGWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA----GFEVH  310 (387)
T ss_pred             cCcCceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CCCcc
Confidence            8 799999999999998877654444566666666656555564211  1223455566666666666553    21111


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ....|+++++++...+.   .   ...+++++|+ ++||++.+
T Consensus       311 ~~~g~~~~~~~~~~~~~---~---~~~~~~~~l~~~~gv~v~p  347 (387)
T PRK07777        311 DSAGTYFLCADPRPLGY---D---DGTEFCRALPERVGVAAIP  347 (387)
T ss_pred             CCCcceEEEecccccCC---C---CHHHHHHHHHHhCCEEEeC
Confidence            12235677777632110   0   1357888886 57999865

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.82  E-value=2.9e-18  Score=176.83  Aligned_cols=296  Identities=14%  Similarity=0.059  Sum_probs=183.9

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhCC---CCCceEEEcCCHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMP---GNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~---~~~~~v~~~~sGseA~e~Ai  175 (447)
                      ..+||..|...   .-..|.+.+++.+.....    ..|.. ....+|.+.+++++.   ...++|++++++++|+..++
T Consensus        86 ~~i~L~~g~p~---~~~~p~~~~~~~~~~~~~----~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~  158 (431)
T PRK15481         86 PLHDLAGGNPD---PQRLPDLSRYFARLSRTP----RLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLL  158 (431)
T ss_pred             hhhhhhcCCCC---hhHhHHHHHHHHHhhhhh----hhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHH
Confidence            35666555321   112356666666544332    12332 224566667766653   12357999999999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      +....  +++.|++.+++|.+....+...             |...++.|....   +.|    .+++++.+..    ++
T Consensus       159 ~~l~~--pgd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~---g~~----~~~l~~~~~~----~~  212 (431)
T PRK15481        159 CAHLL--PGDSVAVEDPCFLSSINMLRYA-------------GFSASPVSVDAE---GMQ----PEKLERALAQ----GA  212 (431)
T ss_pred             HHhCC--CCCEEEEeCCCcHHHHHHHHHc-------------CCeEEeeccCCC---CCC----HHHHHHHHhc----CC
Confidence            85432  5688999999998776554433             222233222111   123    5677777653    34


Q ss_pred             EEEEEcc-ccCCCceeeCCCChHHHHHHHHHHh-CCEEEEeccccCccccCCCcccccccCCCCCEE---EeeccccCCc
Q 013235          256 AGFLSES-IQGVGGIIELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIGNGI  330 (447)
Q Consensus       256 aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg~G~  330 (447)
                      .++++-| .++++|.+. +++.+++|.++|++| ++++|.||+|..|...+ ..-....  ..+.++   +|||.++.|+
T Consensus       213 k~i~~~p~p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~-~~~~~~~--~~~~vi~~~SfSK~~~~Gl  288 (431)
T PRK15481        213 RAVILTPRAHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSP-YHSVIPQ--TTQRWALIRSVSKALGPDL  288 (431)
T ss_pred             CEEEECCCCCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCC-CCCCCcC--CCCCEEEEeeeccccCCCc
Confidence            4555554 455667665 788899999999999 99999999999885333 1111111  123444   6999999999


Q ss_pred             cccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHhcCCeeeEeec
Q 013235          331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER---LTALKDKYGIIGDVRGR  407 (447)
Q Consensus       331 pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~---L~~l~~~~~~i~~vrg~  407 (447)
                      ++||+++++++++.+.......+++.|.+++.++.+.|+   +..+.++++++.+.++++   +.+..+++++....+..
T Consensus       289 RiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~g  365 (431)
T PRK15481        289 RLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLT---DPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGD  365 (431)
T ss_pred             eeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence            999999999998887643333446678888888888875   333333333333333333   22222333332224667


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |+++++++..+          ..++++.|.++||++.+
T Consensus       366 g~f~~~~l~~~----------~~~~~~~l~~~gV~v~p  393 (431)
T PRK15481        366 GLNLWLPLDTD----------SQATALTLAKSGWLVRE  393 (431)
T ss_pred             eEEEEEECCCC----------HHHHHHHHHHCCcEEec
Confidence            99999988321          35678888999999976

>PRK12414 putative aminotransferase; Provisional

Probab=99.82  E-value=7.6e-18  Score=171.06  Aligned_cols=307  Identities=12%  Similarity=0.086  Sum_probs=186.1

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhc--ccccccccchHHHHHHHHHHHhCCCC---CceEEEcCCHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--QHSTVLYLNHAIADFAEALASKMPGN---LKVVFFTNSGTEANELA  174 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~--~~~~~~~~~~~~~elae~L~~~~~~~---~~~v~~~~sGseA~e~A  174 (447)
                      .+|||..|..  .++ .++.+.+++.+.+...  .+....+..+...++++.+++.++..   .+++++++++++|+..+
T Consensus        30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~  106 (384)
T PRK12414         30 DALNLSQGAP--NFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAA  106 (384)
T ss_pred             CeEEcCCCCC--CCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHH
Confidence            4688887775  344 4788999888766542  11111122344556666666655432   24699999999999999


Q ss_pred             HHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      ++...  .+++.|++.+++|.+........             |...+..|... ..|..|    .+++++.+.   + +
T Consensus       107 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~---~-~  162 (384)
T PRK12414        107 ISALV--HPGDEVIYFEPSFDSYAPIVRLQ-------------GATPVAIKLSP-EDFRVN----WDEVAAAIT---P-R  162 (384)
T ss_pred             HHHhc--CCCCEEEEeCCCccchHHHHHHc-------------CCEEEEEecCc-cccccC----HHHHHhhcC---c-c
Confidence            87542  36688999999997654433322             22222222111 112233    456666553   2 4


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEE---Eeecccc-CC
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIV---TMAKGIG-NG  329 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDiv---t~sK~lg-~G  329 (447)
                      +.++++...++++|.+. +++.+++|.++|++||+++|+||+|..|...|...-.+ ...+....++   +|||.++ .|
T Consensus       163 ~~~v~i~~p~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG  241 (384)
T PRK12414        163 TRMIIVNTPHNPSATVF-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG  241 (384)
T ss_pred             cEEEEEcCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc
Confidence            45555554567777765 67889999999999999999999998765444211111 1112222333   5999997 89


Q ss_pred             ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee-c
Q 013235          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-R  407 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg-~  407 (447)
                      +++||+++++++++.+.......+++.|.+++.++.+.|+.-. ..++.+.+++..+.+.+.|++    ++ +.-.+. .
T Consensus       242 lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g-~~~~~~~g  316 (384)
T PRK12414        242 WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAG----SR-FELLPSEG  316 (384)
T ss_pred             ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHh----CC-CeecCCCc
Confidence            9999999999998887654444677888888888877774200 012334444455555554444    33 222333 4


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHH-HHHHhCCceeec
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIM-DKMKGICALFFS  445 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~-~~l~~~Gvlv~~  445 (447)
                      |+++++++..-.     .. ...+++ +.|.++||.+.+
T Consensus       317 g~~~~~~~~~~~-----~~-~~~~~~~~~l~~~gV~v~p  349 (384)
T PRK12414        317 SFFMLARFRHFS-----DE-SDSDFVLRLIRDARVATIP  349 (384)
T ss_pred             ceEEEEcccccC-----CC-CHHHHHHHHHHhCCEEEec
Confidence            567777763210     00 123444 456688999875

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=6.8e-18  Score=169.36  Aligned_cols=292  Identities=15%  Similarity=0.115  Sum_probs=188.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      ..+||..|..  .++ .+|.+.+++.+.+...  ....|+.+...+|++.++++++...++|++++++++++..+++.. 
T Consensus        23 ~~~~l~~~~~--~~~-~p~~~~~a~~~~~~~~--~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l-   96 (351)
T PRK14807         23 YKYKMDANET--PFE-LPEEVIKNIQEIVKSS--QVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF-   96 (351)
T ss_pred             ceeEccCCCC--CCC-CCHHHHHHHHHHhhcC--cccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh-
Confidence            3477776665  456 6789999988877532  123455556688999999998766788999999999999888754 


Q ss_pred             hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                       ..+++.|++.+++|.+....+...             |...+..+..  ..|+.|    .+++++.+..   .++.+++
T Consensus        97 -~~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~~~~---~~~k~v~  153 (351)
T PRK14807         97 -INKGDVVIYPHPSFAMYSVYSKIA-------------GAVEIPVKLK--EDYTYD----VGSFIKVIEK---YQPKLVF  153 (351)
T ss_pred             -cCCCCEEEEeCCChHHHHHHHHHc-------------CCeEEEeecC--CCCCCC----HHHHHHHhhc---cCCCEEE
Confidence             235678999999997544332221             2222222221  113334    4667666642   2445555


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGAV  335 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pigav  335 (447)
                      +...++++|.+.+    .+++.++|++++.++|+||+|.+|.  +....  ...+..+.++   +|||.++ .|+|+||+
T Consensus       154 l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~--~~~~~~~~vi~~~S~SK~~~~~GlRiG~~  225 (351)
T PRK14807        154 LCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIV--DVINEFENLIVLRTLSKAFGLAGLRVGYA  225 (351)
T ss_pred             EeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchH--HHhhhCCCEEEEecchHhcccchhceeee
Confidence            5555777888776    7888888989889999999998773  31111  1111223444   5899998 89999999


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEE
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel  415 (447)
                      ++++++++.+....  ..+..+++++.++.+.|+.-.-++..+.+++..+++.+.|+    +++.+.-.++.|.++++.+
T Consensus       226 v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~----~~~g~~~~~~~~~~~~i~~  299 (351)
T PRK14807        226 VANENILKYLNLVK--SPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELS----KIPGIKVYPSKTNFILVKF  299 (351)
T ss_pred             ecCHHHHHHHHHcc--CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hCCCcEECcCCccEEEEEc
Confidence            99999998886432  23556788888887777521111222333334444444443    3322333455688888877


Q ss_pred             eeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          416 VTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       416 ~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+           ..++.+.|+++||++..
T Consensus       300 ~~-----------~~~~~~~l~~~gV~v~~  318 (351)
T PRK14807        300 KD-----------ADYVYQGLLERGILVRD  318 (351)
T ss_pred             CC-----------HHHHHHHHHHCCEEEEE
Confidence            31           35688889999999853

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.81  E-value=5.1e-18  Score=169.56  Aligned_cols=271  Identities=9%  Similarity=0.019  Sum_probs=176.4

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEE--cCC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL--RNA  193 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~--~~~  193 (447)
                      +||+|.+|..+.+++++     +..+.+.+|+++|+++++.+.+.++++|||++||..++....  .+++.|++.  +.-
T Consensus        34 ~~~~~~~~~~~~~~~~~-----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--~~gd~Vli~~~d~p  106 (346)
T TIGR03576        34 GGFKIDEEDLELLETYV-----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--PPGRKVVHYLPEKP  106 (346)
T ss_pred             CChhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--CCCCEEEECCCCCC
Confidence            68999999999998863     346788999999999997666889999999999999997443  245666653  223


Q ss_pred             cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      +|........+.+.            ..+..         ++    +++++.    . + +..+|++++ .++.|.+. +
T Consensus       107 ~~~s~~~~~~l~ga------------~~~~~---------~~----l~~l~~----~-~-~~~lIiitg-~s~~G~v~-~  153 (346)
T TIGR03576       107 AHPSIPRSCKLAGA------------EYFES---------DE----LSELKK----I-D-GTSLVVITG-STMDLKVV-S  153 (346)
T ss_pred             CchhHHHHHHHcCC------------EEecc---------CC----HHHHhh----C-c-CceEEEEEC-CCCCCccc-C
Confidence            55544443333321            11110         12    222321    1 2 345677776 46677764 4


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCcc--ccCCCcccccccCCCCCEE--EeeccccCCccccccccCHHHHHhhcCCc
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN  349 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfg--r~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~  349 (447)
                      ..-|++|.++|+++|+++|+||+|..+.  ..| .. ....++  +|++  +|||+++ |+++|++++++++++.+....
T Consensus       154 ~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~-~~-~~~~~~--~divv~s~SKala-G~r~G~v~~~~~li~~l~~~~  228 (346)
T TIGR03576       154 EEDLKRVIKQAKSKEAIVLVDDASGARVRRLYG-QP-PALDLG--ADLVVTSTDKLMD-GPRGGLLAGRKELVDKIKSVG  228 (346)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECCccccccccCC-CC-CHHHcC--CcEEEeccchhcc-ccceEEEEeCHHHHHHHHHhh
Confidence            5669999999999999999999996431  112 11 112233  4665  6899764 568899999999999887654


Q ss_pred             ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHH
Q 013235          350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET  429 (447)
Q Consensus       350 ~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~  429 (447)
                      ....++.+|.++++++++|+.+..+...+.++++..++.+.+..    +..   .+..+.|+.+++...      +.  .
T Consensus       229 ~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~----~~~---~~~~~~f~~~~~~~~------~~--~  293 (346)
T TIGR03576       229 EQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK----LNV---ERTPTGFVIKGVEEE------KL--I  293 (346)
T ss_pred             cCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----CCC---CcCCCeEEEEeCCCC------CH--H
Confidence            33445578889999999998765455566666666666666653    221   122333666665211      11  1


Q ss_pred             HHHHHHHHhCCceeecc
Q 013235          430 LYIMDKMKGICALFFSQ  446 (447)
Q Consensus       430 ~~~~~~l~~~Gvlv~~~  446 (447)
                      ....+.|.++||++.+.
T Consensus       294 ~~~~~ll~~~gV~v~~~  310 (346)
T TIGR03576       294 EIGLDLLRNYGIITITA  310 (346)
T ss_pred             HHHHHHHHhCCEEEeCC
Confidence            33455667889999863

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.81  E-value=3e-18  Score=172.33  Aligned_cols=309  Identities=16%  Similarity=0.150  Sum_probs=190.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHH--hcccccccccc-hHHHHHHHHHHHhCC------CCCc-eEEEcCCHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK--RIQHSTVLYLN-HAIADFAEALASKMP------GNLK-VVFFTNSGTE  169 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~--~~~~~~~~~~~-~~~~elae~L~~~~~------~~~~-~v~~~~sGse  169 (447)
                      +.|||.+|..  ..+++||.+.+++.+..+  ........|.. ....+|.+.+++++.      .+.+ .++++++..+
T Consensus         2 ~~I~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~   79 (363)
T PF00155_consen    2 DVINLGSNAP--LLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA   79 (363)
T ss_dssp             TEEESSSSST--SSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred             CEEEEECCCC--CCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence            4788888776  445566666666655544  11122334553 457888999988875      3456 6777766666


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ++..++.+.+ ..+++.|++.+++|.+....+...             |...++.|......|+.|    .++|++.+++
T Consensus        80 ~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~~  141 (363)
T PF00155_consen   80 ALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLL-------------GAEVIPVPLDSENDFHLD----PEALEEALDE  141 (363)
T ss_dssp             HHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHT-------------TSEEEEEEEEETTTTEET----HHHHHHHHHT
T ss_pred             chhhhhhccc-ccccccceecCCcccccccccccc-------------Cceeeecccccccccccc----cccccccccc
Confidence            6666665443 335678999999997665443322             222333332111233345    5677777775


Q ss_pred             cCCC--CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccccCCCCCEE---Eee
Q 013235          250 GTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIV---TMA  323 (447)
Q Consensus       250 ~~~~--~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~~gv~pDiv---t~s  323 (447)
                      ...+  ++.++++...++++|... +.+.+++|.++|++||+++|+||+|.++......++. ....+-.++++   ++|
T Consensus       142 ~~~~~~~~~~v~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  220 (363)
T PF00155_consen  142 LPSKGPRPKAVLICNPNNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLS  220 (363)
T ss_dssp             SHTTTETEEEEEEESSBTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEEST
T ss_pred             ccccccccceeeeccccccccccc-ccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecc
Confidence            4333  346666666677788765 7888999999999999999999999987544311211 12233344433   588


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHh
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDK  397 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L~~l~~~  397 (447)
                      |.+| .|+|+|++++++++++.+...  ..++..+...++++.+.|..-..     ++..+.++++.+++.+.|++.   
T Consensus       221 K~~g~~GlRvG~i~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---  295 (363)
T PF00155_consen  221 KSFGLPGLRVGYIVAPPELIERLRRF--QRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI---  295 (363)
T ss_dssp             TTTTSGGGTEEEEEEEHHHHHHHHHH--HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             ccccccccccccccchhhhhhhhhhc--cccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh---
Confidence            9998 799999999999999988743  34444477777777666654321     123333444444444444333   


Q ss_pred             cCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          398 YGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       398 ~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                       +. .-..+ .|.++++.+...         ...++.++|+++ ||++.+
T Consensus       296 -~~-~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~p  334 (363)
T PF00155_consen  296 -GI-TVLPPEAGFFLWVRLDPN---------DAEELAQELLEEYGILVRP  334 (363)
T ss_dssp             -TS-EEEHHSBSSEEEEEESHH---------HHHHHHHHHHHHHTEEEEE
T ss_pred             -hh-heeeccCccEEEEEcccc---------hHHHHHHHHHHhCCEEEEe
Confidence             32 22222 577777776421         356799999998 999875

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.81  E-value=3e-18  Score=177.34  Aligned_cols=311  Identities=17%  Similarity=0.188  Sum_probs=210.8

Q ss_pred             cCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccc-ccccc-chHHHHHHHHHHHhC------CCCCceEEEcCC
Q 013235           96 ENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHS-TVLYL-NHAIADFAEALASKM------PGNLKVVFFTNS  166 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~-~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~s  166 (447)
                      .+....+||..|....  .+ ....+.+++.+.++..... ...|. .....+|.+.+++.+      ....++|+++++
T Consensus        86 ~~~~~~i~f~~g~p~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G  163 (459)
T COG1167          86 EDDPSVIDFAGGLPDP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSG  163 (459)
T ss_pred             cCCCceecCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCC
Confidence            4446789998877432  22 2345555555554433221 11222 234444544444433      334568999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      ..+|++++.++...  +++.|++-+++|++........             |+..++.|....+   -|    .++|++.
T Consensus       164 ~q~al~l~~~~l~~--pGd~v~vE~PtY~~~~~~~~~~-------------g~~~~~vp~d~~G---~~----~e~le~~  221 (459)
T COG1167         164 AQQALDLLLRLLLD--PGDTVLVEDPTYPGALQALEAL-------------GARVIPVPVDEDG---ID----PEALEEA  221 (459)
T ss_pred             HHHHHHHHHHHhCC--CCCEEEEcCCCcHHHHHHHHHc-------------CCcEEecCCCCCC---CC----HHHHHHH
Confidence            99999988886543  6789999999999876554433             4444554443222   23    6778887


Q ss_pred             HHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc---ccccccCCCCCEEEe
Q 013235          247 IDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF---WGFEAHGVVPDIVTM  322 (447)
Q Consensus       247 i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~---~~~~~~gv~pDivt~  322 (447)
                      +...   ++.++++.| .|+++|.++ +.+--++|.++|++||+++|-||++..|...+...   .+.+..+-+--+-+|
T Consensus       222 ~~~~---~~k~~y~~P~~qNPtG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSF  297 (459)
T COG1167         222 LAQW---KPKAVYVTPTFQNPTGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSF  297 (459)
T ss_pred             Hhhc---CCcEEEECCCCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeee
Confidence            7643   678999999 888999887 67888999999999999999999999987765322   233333334445589


Q ss_pred             eccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---Hhc-
Q 013235          323 AKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK---DKY-  398 (447)
Q Consensus       323 sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~---~~~-  398 (447)
                      ||.++.|+++||+++++++++.+....+..+.+.+.+.+.+....|.   +..+.++++++.+.++++...+.   +++ 
T Consensus       298 SK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~  374 (459)
T COG1167         298 SKTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRREYARRRDALLEALAEYL  374 (459)
T ss_pred             hhhcccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999988876677778888887776655553   44566676666666655544333   333 


Q ss_pred             C-Ce-eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          399 G-II-GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       399 ~-~i-~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      + .+ ...+..|+++++++.+.        ....++.+.++++||.+.+
T Consensus       375 ~~~~~~~~p~gG~flwl~l~~~--------~~~~~l~~~a~~~gv~i~~  415 (459)
T COG1167         375 PELATWTRPEGGLFLWLELPEG--------IDARELLAAALEKGVVVTP  415 (459)
T ss_pred             CCCeeeecCCceEEEEEEcCCC--------CCHHHHHHHHHHCCCEEEc
Confidence            2 22 23445599999999543        1256799999999998865

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.81  E-value=1.7e-17  Score=168.90  Aligned_cols=307  Identities=14%  Similarity=0.119  Sum_probs=187.3

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----CC---CCceEEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG---NLKVVFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~~---~~~~v~~~~sGseA  170 (447)
                      ..+|||..|...  ++ .++.+.+++.+.+....   ..|. .....+|.+.+++.+    +.   ..++|++++++++|
T Consensus        30 ~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~a  103 (391)
T PRK07309         30 PGILKLTLGEPD--FT-TPDHVKEAAKRAIDANQ---SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEA  103 (391)
T ss_pred             CCeEEcCCCCCC--CC-CCHHHHHHHHHHHhcCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHH
Confidence            458999888763  55 36788888887765421   1232 223445555555543    21   13579999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..+++...  .+++.|++.+++|.+........             |...+..|... ..|..|    .+++++.+...
T Consensus       104 l~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~~~~~  163 (391)
T PRK07309        104 LSASLTAIL--EPGDKVLLPAPAYPGYEPIVNLV-------------GAEIVEIDTTE-NDFVLT----PEMLEKAILEQ  163 (391)
T ss_pred             HHHHHHHhc--CCCCEEEEeCCCCcchHHHHHHc-------------CCEEEEEecCC-cCCcCC----HHHHHHHhhcc
Confidence            999988542  35678999999998865433221             22222222111 112234    56677776543


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC-E-E--Eeeccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-I-V--TMAKGI  326 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD-i-v--t~sK~l  326 (447)
                       ++++.++++...++++|.+. +.+.+++|.++|++||+++|+||++..|...|........+  .++ + +  +|||.+
T Consensus       164 -~~~~~~i~l~~P~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~  239 (391)
T PRK07309        164 -GDKLKAVILNYPANPTGVTY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSH  239 (391)
T ss_pred             -CCCeEEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhc
Confidence             22455666553366677654 67779999999999999999999999875544222222111  223 2 2  699999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      | .|+++|++++++++++.+.......+.+.+++++.++.+.|+.-.  ...+.++.++..+++.+.|++    +++...
T Consensus       240 g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~  315 (391)
T PRK07309        240 AMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD----LGFKII  315 (391)
T ss_pred             cCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH----CCCeec
Confidence            8 899999999999999887653333445677888888877775311  122334445555555555443    332222


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHH-HHhCCceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK-MKGICALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~-l~~~Gvlv~~  445 (447)
                      ....|+++++++....    .  ....++.+. |.++||++.+
T Consensus       316 ~p~gg~~~~~~l~~~~----~--~~~~~~~~~l~~~~gv~v~p  352 (391)
T PRK07309        316 KPDGAFYIFAKIPAGY----N--QDSFKFLQDFARKKAVAFIP  352 (391)
T ss_pred             CCCeeEEEEEECCCCC----C--CCHHHHHHHHHHhCCEEEeC
Confidence            2334677777763210    0  013456765 4578999864

>PRK08175 aminotransferase; Validated

Probab=99.81  E-value=1.4e-17  Score=169.84  Aligned_cols=311  Identities=15%  Similarity=0.108  Sum_probs=184.2

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC------CCCCc-eEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLK-VVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~------~~~~~-~v~~~~sGse  169 (447)
                      |+.++||..|..   .+..+|.+.+++.+.+....  ...|.. ....+|.+.+++++      +...+ ++++++++++
T Consensus        28 ~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~  102 (395)
T PRK08175         28 GEDIIDFSMGNP---DGPTPPHIVEKLCEVAQRPD--THGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKE  102 (395)
T ss_pred             CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence            456788877643   23346778888877664321  122332 22344555554432      22334 6889999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ++..++....  .+++.|++.+++|..........             |+..+..|....+.|       .+++++++..
T Consensus       103 ~l~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~-------~~~l~~~l~~  160 (395)
T PRK08175        103 GLAHLMLATL--DHGDTVLVPNPSYPIHIYGAVIA-------------GAQVRSVPLVEGVDF-------FNELERAIRE  160 (395)
T ss_pred             HHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHHc-------------CCeEEEEecccCCCc-------HHHHHHHHhh
Confidence            9998776442  35678999999987654443221             233333222111111       5667777654


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC----EEEeecc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAKG  325 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD----ivt~sK~  325 (447)
                      ..+ ++.++++...++++|.+. +.+.+++|.++|++||+++|+||++..+-..|.....+-...-.+|    +.+|||.
T Consensus       161 ~~~-~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  238 (395)
T PRK08175        161 SYP-KPKMMILGFPSNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKS  238 (395)
T ss_pred             ccC-CceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccc
Confidence            322 455666654466777665 7888899999999999999999999887544421111111111123    2368999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      +| .|+++|++++++++++.+........++.+.+.+.++.+.|+..++  +.+.+.+++..+++.+.|++    +++..
T Consensus       239 ~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~  314 (395)
T PRK08175        239 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE----AGWMV  314 (395)
T ss_pred             ccCcchhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----cCCcc
Confidence            97 7999999999999999876543334566677777777777742111  11223333333444444443    33222


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      .....|+++++++.++...  .   ...+++++|+ +.||++.+.
T Consensus       315 ~~p~~g~~i~i~l~~~~~~--~---~~~~~~~~l~~~~gv~v~p~  354 (395)
T PRK08175        315 EMPKASMYVWAKIPEPYAA--M---GSLEFAKKLLNEAKVCVSPG  354 (395)
T ss_pred             cCCCEEEEEEEECCcccCC--C---CHHHHHHHHHHhCCEEEeCc
Confidence            2234589999998532100  0   1356777766 679998753

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.81  E-value=7.4e-18  Score=171.69  Aligned_cols=305  Identities=12%  Similarity=0.030  Sum_probs=182.7

Q ss_pred             ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-ccccccchHHHHHHHHHHHhCC----CCC-ceEEEcCCHH
Q 013235           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMP----GNL-KVVFFTNSGT  168 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~~~~~~~~elae~L~~~~~----~~~-~~v~~~~sGs  168 (447)
                      +..|+.++||..|..  .++ .++.+.+++.+.+..... ....+..+....+++.+.+...    .+. ++|+++++++
T Consensus        24 ~~~~~~~i~l~~~~p--~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~  100 (393)
T TIGR03538        24 PPASKPPIALSIGEP--KHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR  100 (393)
T ss_pred             hhcCCCeEEecCCCC--CCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence            456788899988776  344 578899998887653211 1111122333444444444322    234 4789999999


Q ss_pred             HHHHHHHHHHHhhcCCC--eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCN--DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~--~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      +|+..+++....  .++  .|++.+++|.+....+...             |+..+..|....+.|..|    .+++++.
T Consensus       101 ~al~~~~~~l~~--~gd~~~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~  161 (393)
T TIGR03538       101 EALFAFAQAVIN--PGQAPLVVMPNPFYQIYEGAALLA-------------GAEPYFLNCTAENGFLPD----FDAVPES  161 (393)
T ss_pred             HHHHHHHHHHcC--CCCcceEEecCCCCcchHHHHHhc-------------CCeEEEeeccccCCCCCC----HHHHHHH
Confidence            999999886542  233  4888899997665433221             233333332111223334    4556655


Q ss_pred             HHccCCCCeEEE-EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccc----ccccCC--CCC
Q 013235          247 IDFGTSGHVAGF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWG----FEAHGV--VPD  318 (447)
Q Consensus       247 i~~~~~~~~aav-i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~----~~~~gv--~pD  318 (447)
                      +..    ++.++ +..| ++++|.+. +.+.+++|.++|++|++++|.||+|..|...+. ....    ....+.  .+.
T Consensus       162 ~~~----~~k~i~l~~p-~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (393)
T TIGR03538       162 VWR----RCQLLFVCSP-GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRR  235 (393)
T ss_pred             Hhh----cceEEEEeCC-CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhccccccccccc
Confidence            532    33444 4555 66677655 788999999999999999999999988754321 1111    111111  123


Q ss_pred             EE---Eeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHH
Q 013235          319 IV---TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN----NAHVVGSYLKER  390 (447)
Q Consensus       319 iv---t~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~----~~~~~g~~l~~~  390 (447)
                      ++   +|||.++ .|+++|++++++++++.+.......+++.+++.+.++.+.|.   .+++.+    ..++..+.+.+.
T Consensus       236 vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~  312 (393)
T TIGR03538       236 CLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEI  312 (393)
T ss_pred             EEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHH
Confidence            33   6999876 799999999999998877643333456678888888877773   222222    233333333333


Q ss_pred             HHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       391 L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      |++.   +.  ...+..|+++++++..      +    ..++++.|+ ++||.+.+
T Consensus       313 L~~~---~~--~~~p~gg~f~~~~~~~------~----~~~~~~~l~~~~gV~v~p  353 (393)
T TIGR03538       313 LGQV---LD--LELPDAGFYLWPKVPG------D----DEAFARALYEEENVTVLP  353 (393)
T ss_pred             HHhh---Cc--ccCCCeeEEEEEECCC------C----HHHHHHHHHHHCCEEEeC
Confidence            3332   11  1235568999998730      1    246777776 57999854

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=8.2e-18  Score=168.73  Aligned_cols=290  Identities=15%  Similarity=0.150  Sum_probs=184.0

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      ++.+|||..|..  +++ .+|.+.+++.+.+...   ...|+++...+|.+.+++++..+.++|++++++++++..+++.
T Consensus        23 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~---~~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~   96 (353)
T PRK05387         23 LAKLIKLNTNEN--PYP-PSPKVLEAIRAALGDD---LRLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLA   96 (353)
T ss_pred             ccceeeccCCCC--CCC-CCHHHHHHHHHHhhhh---hhcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH
Confidence            356899998876  345 4789999998876542   1345655567899999999877778899999999999999986


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      ..  ..++.|++.+++|......+...             |+.....|..  ..|+-|    ++++++      . ....
T Consensus        97 l~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~------~-~~~v  148 (353)
T PRK05387         97 FF--NHDRPLLFPDITYSFYPVYAGLY-------------GIPYEEIPLD--DDFSID----VEDYLR------P-NGGI  148 (353)
T ss_pred             hc--CCCCEEEEeCCCHHHHHHHHHHc-------------CCEEEEeecC--CCCCCC----HHHHHh------c-CCEE
Confidence            53  25678999999985544332221             2222222221  123234    334432      1 2245


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHh-CCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      ++..| ++++|.+.+    .+++.++++++ ++++|+||+|..|+..  .....  .+..+.++   +|||.++ .|+++
T Consensus       149 ~~~~P-~NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~~--~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~  219 (353)
T PRK05387        149 IFPNP-NAPTGIALP----LAEIERILAANPDSVVVIDEAYVDFGGE--SAIPL--IDRYPNLLVVQTFSKSRSLAGLRV  219 (353)
T ss_pred             EEeCC-CCCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCCc--chHHH--HhhCCCEEEEEehhHhhcchhhhc
Confidence            66677 666777765    55556666654 9999999999877521  11111  11123333   5899999 89999


Q ss_pred             cccccCHHHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235          333 GAVVTTPEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~  410 (447)
                      |++++++++++.+.... ...+++.+++++.++.+.|+.-+ -++..+++++..+++.+.|++    ++. .-.+..|.+
T Consensus       220 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~~~~~~~~~  294 (353)
T PRK05387        220 GFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEA----LGF-EVLPSKANF  294 (353)
T ss_pred             eeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCC-eECCCcCcE
Confidence            99999999988876432 22467778888888877774211 112334444444555555544    332 223445677


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.+.+...         ...++++.|.++||+++
T Consensus       295 ~~~~~~~~---------~~~~~~~~l~~~gi~v~  319 (353)
T PRK05387        295 VFARHPSH---------DAAELAAKLRERGIIVR  319 (353)
T ss_pred             EEEECCCC---------CHHHHHHHHHHCCEEEE
Confidence            76665210         13578889999999985

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.81  E-value=8.7e-18  Score=172.03  Aligned_cols=316  Identities=16%  Similarity=0.129  Sum_probs=183.9

Q ss_pred             ecCCCeEEEecCCcccc--cCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhC------CCCCceEEEcC
Q 013235           95 DENGRRYLDAFGGIATV--CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM------PGNLKVVFFTN  165 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~--~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~------~~~~~~v~~~~  165 (447)
                      ..+|+..|+|..|....  .+. .+|.+.+++.+.++...  ...| +.....+|.+.+++++      +...++|++++
T Consensus        28 ~~~~~~~i~l~~G~p~~~~~~~-~p~~~~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~  104 (409)
T PLN00143         28 EDDHRLAISFGFGDPSCFECFR-TTNIAEDAIVEAVRSAK--FNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTL  104 (409)
T ss_pred             cCCCCceeeCCCCCCCCCCCCC-CCHHHHHHHHHHHhCcC--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEec
Confidence            44577889988776531  133 57888899988776521  1223 2334445555555554      33457899999


Q ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       166 sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      ++++++..+++...  .+++.|++.+++|.+....+...             |...+..+......|..|    .++|++
T Consensus       105 G~~~al~~~~~~l~--~~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~  165 (409)
T PLN00143        105 GCKHAAEIIIKVLA--RPEANILLPRPGFPDVETYAIFH-------------HLEIRHFDLLPEKGWEVD----LDAVEA  165 (409)
T ss_pred             ChHHHHHHHHHHHc--CCCCEEEEcCCCCcCHHHHHHHc-------------CCEEEEEeccCCCCCcCC----HHHHHH
Confidence            99999999998543  35688999999998775544332             222222221111123334    566766


Q ss_pred             HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Ee
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TM  322 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~  322 (447)
                      ++.   ++..+.+++.| ++++|.+. +.+.+++|.++|++|++++|+||+|..|...+..+-....++-.+.++   +|
T Consensus       166 ~~~---~~~~~~~~~nP-~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~Sf  240 (409)
T PLN00143        166 IAD---ENTIAMVIINP-GNPCGSVY-SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSI  240 (409)
T ss_pred             hcc---cCCEEEEEECC-CCCCCCcc-CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccc
Confidence            654   33567788888 55667665 788899999999999999999999998865542111112222222333   58


Q ss_pred             ecccc-CCccccccccC-H-HHH------HhhcCCcccccCCCChHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHH
Q 013235          323 AKGIG-NGIPLGAVVTT-P-EIA------EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL----QNNAHVVGSYLKE  389 (447)
Q Consensus       323 sK~lg-~G~pigav~~~-~-~i~------~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l----~~~~~~~g~~l~~  389 (447)
                      ||.++ .|+|+||++++ + .+.      +.+......+++ .+.++++++.+.|+.- .+++    .+.+++..+++.+
T Consensus       241 SK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  318 (409)
T PLN00143        241 SKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKT-TEDFFSKTINILRAALAFCYD  318 (409)
T ss_pred             hhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHH
Confidence            99965 79999999983 3 332      222221122233 4677777777777421 1122    2223333333333


Q ss_pred             HHHHHHHhcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHH-HHHHhCCceeecc
Q 013235          390 RLTALKDKYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIM-DKMKGICALFFSQ  446 (447)
Q Consensus       390 ~L~~l~~~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~-~~l~~~Gvlv~~~  446 (447)
                      .|.    +++...  ..+..|+++++++.....   +......+++ +.+.++||++.++
T Consensus       319 ~L~----~~~~~~~~~~p~gg~f~w~~l~~~~~---~~~~~~~~~~~~ll~~~gV~v~pg  371 (409)
T PLN00143        319 KLK----EIPCIMCPQKAEGAFFALVKLNLLLL---EDIEDDMEFCLKLAKEESLIILPG  371 (409)
T ss_pred             HHh----cCCCCCCCCCCCeeEEEEEecchhhc---CCCCCHHHHHHHHHHhCCEEEeCc
Confidence            332    333221  223458999999842100   0000123454 4557889998753

>PRK07550 hypothetical protein; Provisional

Probab=99.81  E-value=5.3e-18  Score=172.33  Aligned_cols=309  Identities=14%  Similarity=0.074  Sum_probs=185.5

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-----cchHHHHHHHHHHHhCC--CCCceEEEcCCHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-----LNHAIADFAEALASKMP--GNLKVVFFTNSGTE  169 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-----~~~~~~elae~L~~~~~--~~~~~v~~~~sGse  169 (447)
                      .|..++||..|....  . .++.+.+++.+.+... + ...|     ..+....+++.+.+...  ...++|++++++++
T Consensus        27 ~~~~~i~l~~~~~~~--~-~~~~~~~~~~~~~~~~-~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~  101 (386)
T PRK07550         27 ADGPLIDLSQAVPGY--P-PPPELLRALAEAAADP-A-AHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQ  101 (386)
T ss_pred             cCCCeEEeCCCCCCC--C-CCHHHHHHHHHHHhCc-C-CcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHH
Confidence            456689998887632  2 3678888877766421 1 1122     22233444444444322  34578999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..+++...  ..++.|++.+++|.+.......             .|...++.+......|..|    .+++++.++.
T Consensus       102 al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-------------~g~~~~~v~~~~~~~~~~~----~~~l~~~~~~  162 (386)
T PRK07550        102 AFWAAMVTLA--GAGDEVILPLPWYFNHKMWLDM-------------LGIRPVYLPCDEGPGLLPD----PAAAEALITP  162 (386)
T ss_pred             HHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHh-------------cCCEEEEEecCCCcCCCCC----HHHHHHHhcc
Confidence            9998887653  2567899999999655432211             1333333332211222223    5667777653


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcc-cccccCCCCC---EEEeecc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW-GFEAHGVVPD---IVTMAKG  325 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~-~~~~~gv~pD---ivt~sK~  325 (447)
                         +..+.+++.|. +++|.+. +.+.+++|.++|++||+++|+||+|.+|...+.... .+...+...+   +.+|||.
T Consensus       163 ---~~~~v~~~~P~-NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  237 (386)
T PRK07550        163 ---RTRAIALVTPN-NPTGVVY-PPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKS  237 (386)
T ss_pred             ---cCcEEEEeCCC-CCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhh
Confidence               23345666664 5677665 688899999999999999999999988743221110 1111111222   3379999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      ++ .|+++|++++++++++.+.......+.+.+.+++.++...|+.+++  ++..+.+++..+.+.+.|...    +.+.
T Consensus       238 ~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~  313 (386)
T PRK07550        238 YALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL----PGWE  313 (386)
T ss_pred             ccCcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC----CCce
Confidence            98 8999999999999988776543334556678887777777754321  123334444445555555443    2222


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .....|.++++++....       ....++++.|+ ++||++.+
T Consensus       314 ~~~~g~~~~~~~~~~~~-------~~~~~l~~~l~~~~gv~v~p  350 (386)
T PRK07550        314 LLASGAYFAYVRHPFPD-------RPSREVARRLAKEAGILCLP  350 (386)
T ss_pred             eCCCceEEEEecCCCCC-------CCHHHHHHHHHHhcCEEEeC
Confidence            12334677787773211       11456888775 57999875

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.80  E-value=6e-18  Score=171.04  Aligned_cols=299  Identities=15%  Similarity=0.097  Sum_probs=185.6

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      +..+|||..|..  ++| ..|.+.+++.+.....    ..|++..-.+|.+.++++++.+.++|++++++++++..+++.
T Consensus        35 ~~~~i~l~~~~~--~~~-~~~~~~~al~~~~~~~----~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  107 (371)
T PRK05166         35 VPRIAKLGSNEN--PLG-PSPAVRRAFADIAELL----RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRA  107 (371)
T ss_pred             CcceEEcCCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence            447899998765  456 6788888887654432    234443334899999998876677899999999999988875


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      ..  ..++.|++.+++|.+....+...             |+.....|...  .++.|    .+++++.+...   ....
T Consensus       108 ~~--~~gd~vli~~P~y~~~~~~~~~~-------------g~~~~~v~~~~--~~~~~----~~~l~~~~~~~---~~~v  163 (371)
T PRK05166        108 VL--RPGDRVVTLYPSFPLHEDYPTMM-------------GARVERVTVTP--DLGFD----LDALCAAVARA---PRML  163 (371)
T ss_pred             hc--CCCCEEEEcCCChHHHHHHHHHc-------------CCeEEEeecCC--CCCCC----HHHHHHhhhcC---CCEE
Confidence            42  35678999999997654332211             22222222211  12233    45666666431   2233


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCCCCEE---Eeecccc-CCccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      ++..| ++++|.+. +.+.+++|.++|++ ++++|+||++..|...+......... ...+.++   +|||.++ .|+|+
T Consensus       164 ~l~~p-~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRi  240 (371)
T PRK05166        164 MFSNP-SNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRV  240 (371)
T ss_pred             EEeCC-CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhhe
Confidence            44455 56677766 56677777777764 89999999998875322111111111 1223344   5999999 89999


Q ss_pred             ccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          333 GAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       333 gav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      ||+++ ++++++.+....  ..++.|.+++.++.+.|.   ++++.++..+.-+.-++.+.+..+++++ .-.+..|+++
T Consensus       241 G~~i~~~~~l~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~p~~g~fl  314 (371)
T PRK05166        241 GYGLVSDPELVGLLDRVR--TPFNVNGAAQAAALAALD---DEEHLAKGVALALAERERLKKELAEMGY-RIAPSRANFL  314 (371)
T ss_pred             eeeecCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCcC-eeCCCcCCEE
Confidence            99765 788888775422  356678888878877774   2233333222222223334444344443 2346678888


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      ++++..+          ..++++.|+++||++.+.
T Consensus       315 ~~~~~~~----------~~~l~~~l~~~gi~v~p~  339 (371)
T PRK05166        315 FFDARRP----------ASAVAEALLRQGVIVKPW  339 (371)
T ss_pred             EEeCCCC----------HHHHHHHHHHCCeEEecC
Confidence            8875211          356889999999998753

>PLN02187 rooty/superroot1

Probab=99.80  E-value=1.3e-17  Score=173.12  Aligned_cols=318  Identities=14%  Similarity=0.082  Sum_probs=183.9

Q ss_pred             CCCeEEEecCCccccc--CCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhC------CCCCceEEEcCCH
Q 013235           97 NGRRYLDAFGGIATVC--CGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM------PGNLKVVFFTNSG  167 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~--lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~------~~~~~~v~~~~sG  167 (447)
                      +++.+|++..|.....  +- ..+++.+++.+.++...  ...| +.....+|.+.+++++      +.+.++|++++++
T Consensus        64 ~~~~vi~l~~Gdp~~~p~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~  140 (462)
T PLN02187         64 VNKTILPLGHGDPSVYPCFR-TCIEAEDAVVDVLRSGK--GNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGC  140 (462)
T ss_pred             CCCCeEECCCCCCCCCCCCC-CCHHHHHHHHHHHhCCC--CCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence            4677888877643210  11 34678888888776431  1223 3444555666666654      2356789999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|+..+++...  .+++.|++.+++|.+....+...             |......|......|+.|    ++++++.+
T Consensus       141 ~~al~~~~~~l~--~pGd~Vlv~~P~y~~y~~~~~~~-------------g~~~~~~~l~~~~~~~~d----~~~l~~~~  201 (462)
T PLN02187        141 NQGIEIVFESLA--RPNANILLPRPGFPHYDARAAYS-------------GLEVRKFDLLPEKEWEID----LEGIEAIA  201 (462)
T ss_pred             HHHHHHHHHHhc--CCCCEEEEeCCCCccHHHHHHHc-------------CCEEEEEeCccccCCccC----HHHHHHhc
Confidence            999999998553  35688999999998765433222             222222222112234445    56676665


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeec
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAK  324 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK  324 (447)
                      .   ++..+.+++.|. +++|.+. +.+.+++|.++|++||+++|+||+|..|...|..+.....+.-...++   +|||
T Consensus       202 ~---~~~~~v~i~nP~-NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK  276 (462)
T PLN02187        202 D---ENTVAMVVINPN-NPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISK  276 (462)
T ss_pred             C---CCcEEEEEeCCC-CCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchh
Confidence            4   335678888886 5566554 788899999999999999999999998755442221222221112243   5899


Q ss_pred             ccc-CCccccccccC-H-HH---HHhhcCCcccccC--CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013235          325 GIG-NGIPLGAVVTT-P-EI---AEVLTRRNYFNTF--GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       325 ~lg-~G~pigav~~~-~-~i---~~~l~~~~~~~T~--~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      .++ .|+|+||++++ + .+   ++.+........+  +.+.++++++.+.|+. ..+++.++.++.-+.-++.+.+..+
T Consensus       277 ~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~-~~~~~l~~~~~~l~~~r~~l~~~L~  355 (462)
T PLN02187        277 GWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEK-ADKNFFAKKNKILKHNVDLVCDRLK  355 (462)
T ss_pred             hcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            976 79999999983 3 22   2333321111222  3477888888888752 1123333332222222233333333


Q ss_pred             hcCCeee--EeecceeEEEEEeeCCCCCCCCHHHHHHHH-HHHHhCCceeec
Q 013235          397 KYGIIGD--VRGRGFLLGVEFVTDRQLKTPAKAETLYIM-DKMKGICALFFS  445 (447)
Q Consensus       397 ~~~~i~~--vrg~Gl~~giel~~~~~~~~p~~~~~~~~~-~~l~~~Gvlv~~  445 (447)
                      +++.+..  .+..|+++++++.........+   ..+++ +.+.++||++.+
T Consensus       356 ~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~---~~~~~~~ll~~~gV~v~p  404 (462)
T PLN02187        356 DIPCVVCPKKPESCTYLLTKLELSLMDNIKD---DIDFCVKLAREENLVFLP  404 (462)
T ss_pred             hCCCCcCCCCCCEeEEEEeecChhhCCCCCC---HHHHHHHHHhhCCEEEEC
Confidence            3333222  2445788888774210000001   22344 455789999875

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.80  E-value=6e-18  Score=168.32  Aligned_cols=272  Identities=15%  Similarity=0.103  Sum_probs=178.3

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      ..+||+.+|..  ++|...+.+.+   ..+..       |+.+. .+|.+.|++++.  .++|+++++++||+..++.  
T Consensus        20 ~~~i~l~~ne~--p~~~~~~~~~~---~~~~~-------yp~~~-~~Lr~~ia~~~~--~~~I~it~Gs~~al~~~~~--   82 (330)
T PRK05664         20 ADWLDLSTGIA--PWPWPVPAIPA---DAWAR-------LPETD-DGLEAAARAYYG--APQLLPVAGSQAAIQALPR--   82 (330)
T ss_pred             HHheeecCCcC--CCCCCCcccCH---HHHHh-------CCCCh-HHHHHHHHHHhC--CCCEEECcCHHHHHHHHHH--
Confidence            46799998875  66755444432   22222       44333 688999999984  4789999999999988753  


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                       . .+++.|++.+++|.+....+...             |...+..|              .+++++.+..    ....+
T Consensus        83 -~-~~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~v~--------------~~~~~~~~~~----~~~v~  129 (330)
T PRK05664         83 -L-RAPGRVGVLSPCYAEHAHAWRRA-------------GHQVRELD--------------EAEVEAALDS----LDVLV  129 (330)
T ss_pred             -c-cCCCEEEEcCCChHHHHHHHHHc-------------CCeEEEec--------------hhhHhhhhcC----CCEEE
Confidence             2 35688999999998776554433             23333322              2234444431    22578


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGA  334 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~piga  334 (447)
                      ++.|. +++|.+. +.+.+++|.++|+++|+++|+||+|..|.... .+...   .-.++++   +|||.+| .|+|+||
T Consensus       130 l~nP~-NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~-s~~~~---~~~~~vi~~~SfSK~~gl~GlRiG~  203 (330)
T PRK05664        130 VVNPN-NPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQH-SLAAC---AHRPGLIVLRSFGKFFGLAGARLGF  203 (330)
T ss_pred             EeCCc-CCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcc-ccccc---ccCCCEEEEeeccccccCCCcceEE
Confidence            88996 5666665 67779999999999999999999998774322 22222   2234444   6999999 8999999


Q ss_pred             cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      +++++++++.+...  ..+|+.+.++..++.++|+..+ .+...+.+++..+++.+.|++    ++. ....|.++++.+
T Consensus       204 ~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~-~~~~~~~~f~~~  276 (330)
T PRK05664        204 VLAEPALLRALAEL--LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRR----HGL-TPAGGCALFQWV  276 (330)
T ss_pred             EEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH----CCC-cccCCcceEEEE
Confidence            99999999887643  2356678888888888885321 122334444444555555444    332 112333467776


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .+.        +   ..++.+.|.++||++.
T Consensus       277 ~~~--------~---~~~~~~~l~~~gi~v~  296 (330)
T PRK05664        277 RTE--------D---AAALHEFLARRGILTR  296 (330)
T ss_pred             ecC--------C---HHHHHHHHHHCCeEEE
Confidence            641        1   3578889999999986

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.80  E-value=1.7e-17  Score=167.23  Aligned_cols=298  Identities=13%  Similarity=0.035  Sum_probs=177.8

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC---CCCceEEEcCCHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANEL  173 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~---~~~~~v~~~~sGseA~e~  173 (447)
                      ++..++||..|...   ...+|.+.+++.+..+...+....+.......+++.+.+..+   .+.++|++++++++++..
T Consensus        25 ~~~~~i~l~~~~p~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~  101 (364)
T PRK07865         25 HPDGIVDLSVGTPV---DPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAW  101 (364)
T ss_pred             cCCCEEEcCCCCCC---CCCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHH
Confidence            33457888877532   334678888887654432222111222334455555554433   346789999999999998


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      ++.+.. ...++.|++.+++|.+........             |...+..++             .++++.       .
T Consensus       102 ~~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~-------------~~~l~~-------~  147 (364)
T PRK07865        102 LPTLLG-LGPGDVVVIPELAYPTYEVGARLA-------------GATVVRADS-------------LTELGP-------Q  147 (364)
T ss_pred             HHHHHc-CCCCCEEEECCCCcccHHHHHHhc-------------CCEEEecCC-------------hhhCCc-------c
Confidence            766442 235678999999997654433222             222222211             122211       2


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc--cCCC-CCEE---Eeecccc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA--HGVV-PDIV---TMAKGIG  327 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~--~gv~-pDiv---t~sK~lg  327 (447)
                      ++.+++++..++++|.+. +.+.+++|.++|+++|+++|+||+|..|...+.....++.  .+.. +.++   +|||.++
T Consensus       148 ~~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  226 (364)
T PRK07865        148 RPALIWLNSPSNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSN  226 (364)
T ss_pred             cceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccC
Confidence            456666666677788776 6788999999999999999999999988655421111111  0111 2233   6999996


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg  406 (447)
                       .|+++|++++++++++.+.......+++.+++.+.++.+.|+   +++..++.++.-+..++.+.+..++++.......
T Consensus       227 ~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  303 (364)
T PRK07865        227 LAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVLRPALEAAGFRVDHSE  303 (364)
T ss_pred             CCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence             799999999999998877653333456677888877777664   2333333232222233333333333432211122


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|+++++++..+          ...+.+.|.++||++.+
T Consensus       304 ~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~p  332 (364)
T PRK07865        304 AGLYLWATRGED----------CWDTVAWLAERGILVAP  332 (364)
T ss_pred             ccEEEEEeCCCC----------HHHHHHHHHHCCEEEeC
Confidence            366777765211          24577888999999865

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.80  E-value=2.1e-17  Score=166.14  Aligned_cols=293  Identities=15%  Similarity=0.119  Sum_probs=185.4

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik  176 (447)
                      ++.++|+..|..  +++ .+|.+.+++.+.++...  ...|+.+...+|.+.|++++.... ++|++++++++++..+++
T Consensus        25 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~   99 (356)
T PRK04870         25 ATGMVKLDAMEN--PYR-LPAELRAELGERLAEVA--LNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL   99 (356)
T ss_pred             CCCceeCcCCCC--CCC-CCHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence            467899887765  566 67899999998876421  134555556789999999886433 478999999999998887


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      +..  ..++.|++.+++|.+....+...             |+..++.|..  ..|+.|    .+++++.+...   ++.
T Consensus       100 ~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~--~~~~~d----~~~l~~~~~~~---~~~  155 (356)
T PRK04870        100 ACA--KPGATVLAPEPGFVMYRMSAKLA-------------GLEFVGVPLT--ADFTLD----LPAMLAAIAEH---RPA  155 (356)
T ss_pred             Hhc--CCCCEEEECCCCHHHHHHHHHHc-------------CCEEEEecCC--CCCCCC----HHHHHHHhhcC---CCC
Confidence            543  35678999999997654332221             3333443332  123344    56677766432   344


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      ++++...++++|.+. +.+.+++|.++|   ++++|+||+|..|.... .......   .+.++   +||| ++ .|+|+
T Consensus       156 ~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~~-~~~~~~~---~~~vi~~~S~SK-~~~~GlRi  226 (356)
T PRK04870        156 LVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGDS-WLPRLAR---FPNLLVMRTVSK-LGLAGLRL  226 (356)
T ss_pred             EEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCcc-hHHHHhh---CCCEEEEecchh-hhhHHHhh
Confidence            454443367777776 455566666665   88999999998885321 1111111   22333   5899 66 59999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      |++++++++++.+....  ..|+.+.++.+++...|+..+. ++..+++++..+++.+.|++    .+.+...+..|.++
T Consensus       227 G~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~  300 (356)
T PRK04870        227 GYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAA----LPGVTVFPSAANFI  300 (356)
T ss_pred             hhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECCCCCeEE
Confidence            99999999998876532  3456777887777777752110 12233344444444444443    32233345567788


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+.        .   ..++.+.|.++||++.+
T Consensus       301 ~~~~~--------~---~~~~~~~l~~~gI~v~~  323 (356)
T PRK04870        301 LVRVP--------D---AAAVFDGLKTRGVLVKN  323 (356)
T ss_pred             EEECC--------C---HHHHHHHHHHCCEEEEE
Confidence            88763        1   24688889999999975

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.80  E-value=1.6e-17  Score=167.10  Aligned_cols=294  Identities=14%  Similarity=0.079  Sum_probs=180.0

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC---CCCceEEEcCCHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANEL  173 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~---~~~~~v~~~~sGseA~e~  173 (447)
                      ++..++|+.+|...   ...+|.+.+++.+......+....+..+...++++.+.+...   .+.++|++++++++++..
T Consensus        19 ~~~~~i~l~~~~p~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~   95 (357)
T TIGR03539        19 HPDGIVDLSVGTPV---DPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW   95 (357)
T ss_pred             CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence            44567898887543   234688888887655433222222223344455555555432   345789999999999998


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      ++.+.. ...++.|++.+++|.+....+...             |...+..+         +    .+.++       +.
T Consensus        96 ~~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~---------~----~~~l~-------~~  141 (357)
T TIGR03539        96 LPTLLG-LGPGDTVVIPELAYPTYEVGALLA-------------GATPVAAD---------D----PTELD-------PV  141 (357)
T ss_pred             HHHHHc-CCCCCEEEECCCCcHHHHHHHHhc-------------CCEEeccC---------C----hhhcC-------cc
Confidence            776431 135688999999997665443222             22222221         1    12221       12


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc--cC-CCCC-EE--Eeecccc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA--HG-VVPD-IV--TMAKGIG  327 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~--~g-v~pD-iv--t~sK~lg  327 (447)
                      ++.+++++..++++|.+. +.+.+++|.++|++||+++|+||+|..|...+.....+..  .+ .... |+  +|||.++
T Consensus       142 ~~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  220 (357)
T TIGR03539       142 GPDLIWLNSPGNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN  220 (357)
T ss_pred             CccEEEEeCCCCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccC
Confidence            566777766667777765 6788999999999999999999999888655421111111  11 1112 33  6999996


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                       .|+++|++++++++++.+........++.+++++.++.+.|+   +++..    +..++..+++.+.|.    +++...
T Consensus       221 ~~G~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~----~~g~~~  293 (357)
T TIGR03539       221 LAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKPALE----KAGFRI  293 (357)
T ss_pred             CCceeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHH----HcCCCC
Confidence             799999999999998877643333456778888888777774   22222    333333344444443    333211


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .....|+++++++..          ....+.+.|.++||.+.+
T Consensus       294 ~~p~~~~~~~~~~~~----------~~~~~~~~l~~~gV~v~p  326 (357)
T TIGR03539       294 DHSEAGLYLWATRGE----------DAWDTVDRLAELGILVAP  326 (357)
T ss_pred             cCCCccEEEEEECCC----------CHHHHHHHHHhCCEEECC
Confidence            112236677776521          134678889999999865

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02656 tyrosine transaminase

Probab=99.79  E-value=2.8e-17  Score=168.26  Aligned_cols=320  Identities=18%  Similarity=0.138  Sum_probs=185.0

Q ss_pred             CCCeEEEecCCccccc-CCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhC----C--CCCceEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVC-CGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM----P--GNLKVVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~-lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~----~--~~~~~v~~~~sGs  168 (447)
                      .|+.+|+|..|..... .-..++.+.+++.+.+....  ...| +.....+|.+.+++++    +  .+.++|+++++++
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~  106 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNK--FNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCT  106 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChH
Confidence            6788999988776421 12357889999888776521  1223 2333445555555554    2  3457899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|+..++....  ..++.|++.+++|..........             |+..+..|......|..|    .+++++.+.
T Consensus       107 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d----~~~l~~~~~  167 (409)
T PLN02656        107 QAIDVALSMLA--RPGANILLPRPGFPIYELCAAFR-------------HLEVRYVDLLPEKGWEVD----LDAVEALAD  167 (409)
T ss_pred             HHHHHHHHHHh--CCCCeEEEeCCCCCcHHHHHHHc-------------CCEEEEEeCCCcCCCCCC----HHHHHHHhc
Confidence            99999988653  35678999999986543322211             222222221111123334    466666654


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecc
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKG  325 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~  325 (447)
                         ++..+.+++.| ++.+|.+. +++.+++|.++|++||+++|+||+|.+|-..+...-....++-...++   +|||.
T Consensus       168 ---~~~~~v~l~~P-~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~  242 (409)
T PLN02656        168 ---QNTVALVIINP-GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKR  242 (409)
T ss_pred             ---cCceEEEEECC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchh
Confidence               33566777777 45666664 677899999999999999999999998865552111111122122233   59999


Q ss_pred             cc-CCccccccccC--------HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013235          326 IG-NGIPLGAVVTT--------PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       326 lg-~G~pigav~~~--------~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      ++ .|+|+|+++++        +++++.+..... ...+.+.+++.++.+.|+.- .+++.++.++.-+.-++.+.+..+
T Consensus       243 f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~L~  320 (409)
T PLN02656        243 WIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQT-DESFFKKTINILKQSSDICCDRIK  320 (409)
T ss_pred             ccCcceeEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65 79999999983        577776653211 12345778888888888521 122332222222222333333333


Q ss_pred             hcCCee-eE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          397 KYGIIG-DV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       397 ~~~~i~-~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +++... .+ +..|+++++++.........+  ....+.+.|.++||++.++
T Consensus       321 ~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~--~~~~~~~~l~~~gV~v~pg  370 (409)
T PLN02656        321 EIPCITCPHKPEGSMAVMVKLNLSLLEDISD--DIDFCFKLAREESVIILPG  370 (409)
T ss_pred             hCCCCcCCcCCCeEEEEEEecchhhcCCCCC--HHHHHHHHHHhCCEEEecc
Confidence            333221 12 334788888874210000001  1123456778899998753

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.79  E-value=3.8e-17  Score=166.25  Aligned_cols=304  Identities=14%  Similarity=0.134  Sum_probs=184.9

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHHhCCCC---CceEEEcCCHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPGN---LKVVFFTNSGTEANEL  173 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~~~~~~~~elae~L~~~~~~~---~~~v~~~~sGseA~e~  173 (447)
                      .++|+..|...  +. .++.+.+|+.+.+....   +....+..+....+++.|++.++..   .+.+++++++++++..
T Consensus        28 ~~~~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~  104 (389)
T PRK05957         28 GTISLGQGVVS--YP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN  104 (389)
T ss_pred             CeEEccCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence            35777776653  44 56888999888765432   1112223455667788887776542   4579999999999988


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      ++....  .+++.|++.+++|.+.......             .|+..+..|..  ..|+.|    .+++++.+.   + 
T Consensus       105 ~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~-------------~g~~~~~v~~~--~~~~~d----~~~l~~~i~---~-  159 (389)
T PRK05957        105 AILAIT--DPGDEIILNTPYYFNHEMAITM-------------AGCQPILVPTD--DNYQLQ----PEAIEQAIT---P-  159 (389)
T ss_pred             HHHHhc--CCCCEEEEeCCCCcCHHHHHHh-------------cCCEEEEeecC--CCCCcC----HHHHHHhcC---c-
Confidence            887543  3567899989988654332211             13333322221  123334    566776654   2 


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCC---EEEeecccc-C
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPD---IVTMAKGIG-N  328 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pD---ivt~sK~lg-~  328 (447)
                      ++.++++...++++|.+. +++.+++|.++|+++|+++|+||+|..|...+...... ...+..+.   +-+|||.+| .
T Consensus       160 ~~klv~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~  238 (389)
T PRK05957        160 KTRAIVTISPNNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFA  238 (389)
T ss_pred             CceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCc
Confidence            344545544567777766 67789999999999999999999998885443111111 11122222   336999998 7


Q ss_pred             CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       329 G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                      |+|+|++++++++++.+.........+.+.+++.++..+|+.  .+++.    ++++++.+.+.+.|+.    .+.+..+
T Consensus       239 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~  312 (389)
T PRK05957        239 SWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV--GKSYCQQHLPEIAQVRQILLKSLGQ----LQDRCTL  312 (389)
T ss_pred             cceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHh----cCCCccc
Confidence            999999999999998887533333344556777777776641  12232    3333333344444433    3221111


Q ss_pred             --eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          405 --RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       405 --rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                        ...|+++++++..+        ....++++.|+ ++||++.++
T Consensus       313 ~~~~gg~~~~~~~~~~--------~~~~~~~~~l~~~~gv~v~pg  349 (389)
T PRK05957        313 HPANGAFYCFLKVNTD--------LNDFELVKQLIREYRVAVIPG  349 (389)
T ss_pred             cCCCeeEEEEEeCCCC--------CChHHHHHHHHHHCCEEEccc
Confidence              23378888887321        11356888886 589998753

>PRK08912 hypothetical protein; Provisional

Probab=99.79  E-value=2.7e-17  Score=167.14  Aligned_cols=303  Identities=15%  Similarity=0.134  Sum_probs=182.0

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCc-eEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLK-VVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~-~v~~~~sGseA~  171 (447)
                      ..|||..|...  .+ .+|.+.+++.+.+...   ...|+. ....+|.+.+++++    +  .+.+ +|++++|+++|+
T Consensus        27 ~~i~l~~g~p~--~~-~p~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al  100 (387)
T PRK08912         27 GAINLGQGFPD--DP-GPEDVRRAAADALLDG---SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEAL  100 (387)
T ss_pred             CeEEccCCCCC--CC-CCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHH
Confidence            46888888764  34 3678888887766532   122332 22344555555433    2  2345 799999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ..++....  .+++.|++.+++|.+....+...             |+..+..|.. ...|+.|    .+++++.+.   
T Consensus       101 ~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~-~~~~~~~----~~~l~~~~~---  157 (387)
T PRK08912        101 AAALLALV--EPGDEVVLFQPLYDAYLPLIRRA-------------GGVPRLVRLE-PPHWRLP----RAALAAAFS---  157 (387)
T ss_pred             HHHHHHhc--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecC-cccCcCC----HHHHHHHhC---
Confidence            88887542  35678999999997655433221             2222222211 0113333    456666654   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCC-CEE--Eeecccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVP-DIV--TMAKGIG  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~p-Div--t~sK~lg  327 (447)
                      ++..+.++..| ++++|.+. +.+.+++|.++|++|++++|+||+|..|-..+...-.+ +..+... +++  +|||.+|
T Consensus       158 ~~~~~v~l~~p-~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  235 (387)
T PRK08912        158 PRTKAVLLNNP-LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS  235 (387)
T ss_pred             ccceEEEEeCC-CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc
Confidence            22234455555 56667665 67789999999999999999999998764443111111 1112212 233  5899999


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~----l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                       .|+++|++++++++++.+.......+|+.++....++.+.|.  ..++    +.+.+++..+++.+.|+.    +++ .
T Consensus       236 ~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~  308 (387)
T PRK08912        236 LTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRLAAGLRR----IGF-P  308 (387)
T ss_pred             CcCceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHh----CCC-c
Confidence             899999999999999887654333457777777777777664  2223    334444444555554444    332 2


Q ss_pred             eEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          403 DVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       403 ~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      -... .|+++++++.....   +  ....++++.|+ ++||++.+
T Consensus       309 ~~~~~g~~~l~~~l~~~~~---~--~~~~~~~~~l~~~~gV~v~p  348 (387)
T PRK08912        309 VLPSQGTYFLTVDLAPLGL---A--EDDVAFCRRLVEEAGVAAIP  348 (387)
T ss_pred             ccCCCcceEEEecccccCC---C--CCHHHHHHHHHhcCCEEEec
Confidence            2223 36778888743110   0  11356888876 57998875

>PRK05839 hypothetical protein; Provisional

Probab=99.79  E-value=1.3e-17  Score=168.79  Aligned_cols=302  Identities=11%  Similarity=0.015  Sum_probs=181.3

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-ccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANEL  173 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e~  173 (447)
                      .|+.+|||..|...  ++ .++.+.+++.+....... ....+.......+++.+.+..+  ...++|++++++++|+..
T Consensus        22 ~~~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~   98 (374)
T PRK05839         22 KEYKGLDLTIGEPQ--FE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN   98 (374)
T ss_pred             CCCCeEEcCCCCCC--CC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence            38899999988764  55 467888888766543211 1111222334455555555533  356789999999999988


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      ++++...-.+++.|++..++|.+....+...             |+..++.|....+.|..|.    .+.  .+.    +
T Consensus        99 ~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d~----~~~--~~~----~  155 (374)
T PRK05839         99 FPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS-------------RAKVLLMPLTKENDFTPSL----NEK--ELQ----E  155 (374)
T ss_pred             HHHHHhcCCCCCEEEECCCCchhhHHHHHhc-------------CCEEEEeecccccCCcCCc----chh--hhc----c
Confidence            8775432235678889999998766554322             3444444332222232221    111  111    1


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-ccc---C--CCCCEE---Eeec
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAH---G--VVPDIV---TMAK  324 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~---g--v~pDiv---t~sK  324 (447)
                      ..+.+|+.| ++++|.+. +.+.+++|.++|+++|+++|+||+|..|...+ ....+ ...   +  -.+.++   +|||
T Consensus       156 ~k~v~i~nP-~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK  232 (374)
T PRK05839        156 VDLVILNSP-NNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISK  232 (374)
T ss_pred             ccEEEEeCC-CCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEecccc
Confidence            224455555 45566655 78889999999999999999999999874322 22111 110   0  113344   5999


Q ss_pred             ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      .++ .|+|+||+++++++++.+.......+++.+.+.+.++.+.|.   ++++.++.   .+.++++.+.+.+.++..  
T Consensus       233 ~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~---~~~~~~~~~~~~~~l~~~--  304 (374)
T PRK05839        233 RSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWL---DDEHAEFF---RNIYAKNLKLAREILGIT--  304 (374)
T ss_pred             ccCCccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc---cchHHHHH---HHHHHHHHHHHHHhcCCC--
Confidence            986 799999999999998877643323345667777777766663   23333332   233333333333322222  


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeecc
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFSQ  446 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~~  446 (447)
                      .+..|+++++++.+           ..+++++|++ +||++.+.
T Consensus       305 ~p~gg~fi~~~~~~-----------~~~~~~~l~~~~gi~v~pg  337 (374)
T PRK05839        305 IPPATFYVWLPVDN-----------DEEFTKKLYQNEGIKVLPG  337 (374)
T ss_pred             CCCeeEEEEEeCCC-----------hHHHHHHHHHHCCEEEeCc
Confidence            45568899988731           2467788875 99998763

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.79  E-value=1.7e-17  Score=165.30  Aligned_cols=275  Identities=12%  Similarity=0.077  Sum_probs=173.6

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      .+|||.+|.+.  ++  +          ...    ..+|+.+...+|.++|++.+....++|+++++++|++..++++. 
T Consensus        17 ~~i~l~~Nenp--~~--~----------~~~----~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~-   77 (332)
T PRK06425         17 RIIDFSANIND--FM--D----------IGD----ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYI-   77 (332)
T ss_pred             CEEEeccccCC--Cc--C----------hhh----cccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh-
Confidence            57999888763  32  0          111    24578888899999999999877888999999999999988632 


Q ss_pred             hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                         +..++++.+++|......+...             |...+..|...   ++.|    .+.++    ..  +.-+.++
T Consensus        78 ---~~~~vv~~~P~y~~y~~~~~~~-------------G~~v~~vp~~~---~~~~----~~~l~----~~--~~k~v~l  128 (332)
T PRK06425         78 ---NVGNIIIVEPNFNEYKGYAFTH-------------GIRISALPFNL---INNN----PEILN----NY--NFDLIFI  128 (332)
T ss_pred             ---CCCcEEEeCCChHHHHHHHHHc-------------CCeEEEEeCCc---ccCc----HHHHh----hc--CCCEEEE
Confidence               2246888899998776655443             22333332211   1122    12222    21  1224555


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGAV  335 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pigav  335 (447)
                      +.|. +++|.+. +.+.+++|.++|+++|+++|+||++..|...+ ..-.....+-.+.++   +|||.++ .|+|+||+
T Consensus       129 ~nP~-NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~  205 (332)
T PRK06425        129 VSPD-NPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNR-AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYI  205 (332)
T ss_pred             eCCC-CCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhcccccc-chhHHHHhccCCCEEEEeecHHhcCCchhhheee
Confidence            6664 5566654 78889999999999999999999999885433 111111122223444   6999999 99999999


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-eecceeEE
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLG  412 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~g  412 (447)
                      ++++++++.+...  ..+|..+.+++++ +...+. ++  +++.+..++..+++.+.|++    ++ +..+ ...|++++
T Consensus       206 v~~~~li~~l~~~--~~~~~~~~~~~~~-l~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~----~g-~~~~~~~~g~f~~  276 (332)
T PRK06425        206 ATDDYNMKISRKI--TEPWSVCDPAIDF-IRSIDL-DYVAKHSLDIMENERSYLINNLEA----MG-FRAAGDPSANFIT  276 (332)
T ss_pred             ecCHHHHHHHHHc--CCCCccCHHHHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHH----CC-CEECCCCCceEEE
Confidence            9999999888753  2344445444332 222211 11  12334444444445454443    33 2222 45788988


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+. +          ..++.+.|+++||++.+
T Consensus       277 ~~~~-~----------~~~~~~~l~~~gi~v~~  298 (332)
T PRK06425        277 FMIP-D----------AHDFYSYLLKNGILVRL  298 (332)
T ss_pred             EEcC-C----------HHHHHHHHHHCCeEEEE
Confidence            8863 1          35788999999999875

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.79  E-value=1.9e-17  Score=174.36  Aligned_cols=314  Identities=14%  Similarity=0.094  Sum_probs=185.0

Q ss_pred             cCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC------CCCCceEEEcCCH
Q 013235           96 ENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM------PGNLKVVFFTNSG  167 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~------~~~~~~v~~~~sG  167 (447)
                      ..|+.+|||..|.. .++|. .++.+++++.+++....    .|+.. ...+|.+.|++++      ....++|++++++
T Consensus       143 ~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~----~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~  217 (517)
T PRK13355        143 AAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTE----GYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGV  217 (517)
T ss_pred             HcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCC----CCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcH
Confidence            46788999998765 34554 36789999888776431    24433 3566777777665      3456789999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      +|++..+++...  ..++.|++.+++|..+...+...             |...+.++......|..|    ++++++.+
T Consensus       218 ~eal~~~~~~l~--~~Gd~Vli~~P~y~~y~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~l~~~~  278 (517)
T PRK13355        218 SELINLSMSALL--DDGDEVLIPSPDYPLWTACVNLA-------------GGTAVHYRCDEQSEWYPD----IDDIRSKI  278 (517)
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCCcCHHHHHHHC-------------CCEEEEeecCcccCCCCC----HHHHHHhc
Confidence            999999987543  35688999999998766544332             222222222112234444    56666655


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCE--E---Ee
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI--V---TM  322 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDi--v---t~  322 (447)
                      .   ++..+.+|+.| ++++|.+. +.+.+++|.++|++||++||+||+|..|...|.......  ...||+  +   +|
T Consensus       279 ~---~~~k~i~i~nP-~NPTG~v~-~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~--~~~~~~~vi~~~S~  351 (517)
T PRK13355        279 T---SRTKAIVIINP-NNPTGALY-PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIA--SLAPDLFCVTFSGL  351 (517)
T ss_pred             C---cCceEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHH--HhCCCCeEEEEecc
Confidence            3   33445667778 55666665 688999999999999999999999998855442111111  123453  2   37


Q ss_pred             ecccc-CCcccccccc--CHHH----HHhhcCCcccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHH
Q 013235          323 AKGIG-NGIPLGAVVT--TPEI----AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       323 sK~lg-~G~pigav~~--~~~i----~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      ||.++ .|+++||+++  ++++    ++.+... ....++.|.+++.++.++|+..+. +++.+..++.-+. ++.+.+.
T Consensus       352 SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~-r~~l~~~  429 (517)
T PRK13355        352 SKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQ-RELVYNA  429 (517)
T ss_pred             hhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHH
Confidence            99987 6999999994  4543    3333211 123355677888888888742100 1122211111111 2333333


Q ss_pred             HHhcCCeeeEeecce-eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          395 KDKYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       395 ~~~~~~i~~vrg~Gl-~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .++++.+..+...|. ++++++....... .+  ....+.+.|.++||++.+
T Consensus       430 L~~~~g~~~~~p~g~fy~~~~l~~~~~~~-~~--~~~~~~~ll~~~gV~v~p  478 (517)
T PRK13355        430 LNAIPGISAVKPKAAFYIFPKIDVKKFNI-HD--DEQFALDLLHDKKVLIVQ  478 (517)
T ss_pred             HhcCCCcccCCCCeeeEEEeecCcccCCC-CC--HHHHHHHHHHhCCEEEeC
Confidence            333333333444454 4555663210000 01  122344557788999864

>PRK07683 aminotransferase A; Validated

Probab=99.79  E-value=6.8e-17  Score=164.28  Aligned_cols=304  Identities=12%  Similarity=0.093  Sum_probs=178.5

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----C--CCCc-eEEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK-VVFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~~-~v~~~~sGseA  170 (447)
                      ..++||..|...  ++ .++.+.+++.+.++...   ..|. .....+|.+.+++++    +  .+.+ +|++++|+++|
T Consensus        28 ~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~a  101 (387)
T PRK07683         28 DNLISLTIGQPD--FP-TPSHVKEAAKRAITENY---TSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEA  101 (387)
T ss_pred             CCeEEecCCCCC--CC-CCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHH
Confidence            467888877643  33 46788999988876421   1222 223344444444443    2  2345 79999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..+++...  ..++.|++..++|.+........             |+..+..|... ..|..|    .+++++.+.. 
T Consensus       102 l~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~~----~~~l~~~~~~-  160 (387)
T PRK07683        102 IDIAFRTIL--EPGTEVILPAPIYPGYEPIIRLC-------------GAKPVFIDTRS-TGFRLT----AEALENAITE-  160 (387)
T ss_pred             HHHHHHHhC--CCCCEEEEcCCCccchHHHHHHc-------------CCEEEEeecCc-ccCCCC----HHHHHHhcCc-
Confidence            999987643  35678999999998765544332             22222222111 112223    4556665542 


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEE---Eeeccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIV---TMAKGI  326 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDiv---t~sK~l  326 (447)
                         ++.++++...++++|.+. +++.+++|.++|+++|+++|+||+|..+...+. .... +..+....++   +|||.+
T Consensus       161 ---~~~~i~i~~p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~  235 (387)
T PRK07683        161 ---KTRCVVLPYPSNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSH  235 (387)
T ss_pred             ---CceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccc
Confidence               234444443456677655 788899999999999999999999998744332 1111 2112222233   689999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      + .|+++|++++++++++.+.........+.+.+++.++.+.|+.-+.  +.+.++.++..+.+.+.|.+    .+....
T Consensus       236 ~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~  311 (387)
T PRK07683        236 SMTGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS----MGLDVE  311 (387)
T ss_pred             cCccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----cCCccc
Confidence            9 8999999999999988776432223344567777777777642111  12233334444444444443    232212


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHH-HHhCCceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK-MKGICALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~-l~~~Gvlv~~  445 (447)
                      ....|+++++.+....    .   ...++... +.++||++.+
T Consensus       312 ~~~~~~~~~~~~~~~~----~---~~~~~~~~ll~~~gI~v~p  347 (387)
T PRK07683        312 KPTGAFYLFPSIGHFT----M---SSFDFALDLVEEAGLAVVP  347 (387)
T ss_pred             CCCeeEEEEEecccCC----C---CHHHHHHHHHHhCCEEEcC
Confidence            2334667776663211    0   12346555 4678999865

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.79  E-value=4.6e-17  Score=167.58  Aligned_cols=317  Identities=16%  Similarity=0.106  Sum_probs=181.1

Q ss_pred             CCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC------CCCceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP------GNLKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~------~~~~~v~~~~sGse  169 (447)
                      |+.+|++..|.....-.. ..|++.+++.+.++....  ..|. .....++++.+++++.      .+.++|++++++++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~--~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~  128 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKY--NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQ  128 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcC--CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHH
Confidence            788999887754321111 357899999888765311  1233 2234556666665542      23478999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..+++...  .+++.|++.+++|..+...+.....           .+..++.+  ....|..|    ++++++++. 
T Consensus       129 al~l~~~~l~--~~Gd~Vlv~~P~y~~y~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~~~-  188 (430)
T PLN00145        129 AIEIIMSVLA--QPGANILLPRPGYPLYEARAVFSGL-----------EVRHFDLL--PERGWEVD----LEGVEALAD-  188 (430)
T ss_pred             HHHHHHHHhc--CCCCEEEEcCCCCccHHHHHHHcCC-----------EEEEeeCC--cccCCcCC----HHHHHHHhC-
Confidence            9999998653  3567899999999875544332211           12222211  11124344    566776664 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeeccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGI  326 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~l  326 (447)
                        ++..+.+++.|. +++|.+. +.+.+++|.++|+++|+++|+||+|..|...+..+.....++-...++   +|||.+
T Consensus       189 --~~~~~i~i~~P~-NPtG~v~-~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  264 (430)
T PLN00145        189 --ENTVAMVIINPN-NPCGSVY-SYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRW  264 (430)
T ss_pred             --cCceEEEEeCCC-CCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecccccc
Confidence              335677888884 5666654 788899999999999999999999998755442122221122222344   589996


Q ss_pred             c-CCcccccccc--CHHHHH------hhcCCcccccC-CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013235          327 G-NGIPLGAVVT--TPEIAE------VLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       327 g-~G~pigav~~--~~~i~~------~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      + .|+|+||+++  ++++++      .+..  +.... +.+.+.++++...|+.- .+++.++..+.-+.-++.+.+..+
T Consensus       265 ~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~  341 (430)
T PLN00145        265 VVPGWRLGWIATCDPNGILKETKVVDSIRN--YLNISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADICYEKIK  341 (430)
T ss_pred             CCCCeeEEEEEEecchhhhhhhHHHHHHHH--HhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5 7999999996  344432      2221  11222 34567777777777521 122322222221112222322233


Q ss_pred             hcCCeee--EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeecc
Q 013235          397 KYGIIGD--VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFSQ  446 (447)
Q Consensus       397 ~~~~i~~--vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~~  446 (447)
                      +++.+..  .+..|+++++++..+.-....+   ..+++..+ .++||++.++
T Consensus       342 ~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~---~~~~~~~ll~~~gV~v~pG  391 (430)
T PLN00145        342 EIKCITCPHKPEGSMFVMVKLDLSCLSGIKD---DMDFCCKLAKEESVVVLPG  391 (430)
T ss_pred             cCCCCCCCcCCCeeeEEEeccChhhcCCCCC---HHHHHHHHHHhCCEEEeCc
Confidence            3333332  2556788888773210000001   23466555 4679988753

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.79  E-value=4.6e-17  Score=165.94  Aligned_cols=302  Identities=16%  Similarity=0.177  Sum_probs=177.5

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC-----CCCCceEEEcCCHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM-----PGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~-----~~~~~~v~~~~sGseA~  171 (447)
                      |..++||..|...  ++ .++.+.+++.+.....    ..|. .....++.+.+++++     +.+.++|+++++|++|+
T Consensus        29 ~~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~----~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al  101 (397)
T PRK07568         29 GIKVYHLNIGQPD--IK-TPEVFFEAIKNYDEEV----LAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAI  101 (397)
T ss_pred             CCCEEEecCCCCC--CC-CCHHHHHHHHHHhcCC----cCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHH
Confidence            3457788776653  23 3578888877654322    1222 233456666666654     33457899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCC-ChHHHHHHHHHHHHcc
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGA-DGEMYAKDVQDLIDFG  250 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~-d~~~~~~~le~~i~~~  250 (447)
                      ..+++...  .+++.|++.+++|......+..             .|+..++.|......|.. +    .+++++.+.. 
T Consensus       102 ~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~-------------~g~~~~~v~~~~~~g~~~~~----~~~l~~~~~~-  161 (397)
T PRK07568        102 LFAMMAIC--DPGDEILVPEPFYANYNGFATS-------------AGVKIVPVTTKIEEGFHLPS----KEEIEKLITP-  161 (397)
T ss_pred             HHHHHHhc--CCCCEEEEecCCCccHHHHHHH-------------cCCEEEEeecCcccCCCCCC----HHHHHHhcCc-
Confidence            99987542  3567899888888654322211             123333332211111111 2    3566666542 


Q ss_pred             CCCCeEEE-EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc-cCCCCCEE---Eeecc
Q 013235          251 TSGHVAGF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HGVVPDIV---TMAKG  325 (447)
Q Consensus       251 ~~~~~aav-i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~-~gv~pDiv---t~sK~  325 (447)
                         ++.+| +..| ++++|.+. +.+.+++|.++|+++|+++|+||++.+|...+......-. .+..+.++   +|||.
T Consensus       162 ---~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~  236 (397)
T PRK07568        162 ---KTKAILISNP-GNPTGVVY-TKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR  236 (397)
T ss_pred             ---cceEEEEECC-CCCCCccC-CHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhh
Confidence               33444 5566 55667654 6777999999999999999999999998766522222211 22234444   68999


Q ss_pred             cc-CCccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          326 IG-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       326 lg-~G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      ++ .|+|+|+++++ +++++.+..... .+++.+++.+.++.+.|+.-++  +++.+.+++..+.+.+.|+    +++.+
T Consensus       237 ~~~~G~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~  311 (397)
T PRK07568        237 YSACGARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELN----KIPGV  311 (397)
T ss_pred             ccCCCcceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHh----cCCCc
Confidence            98 59999999984 778776543221 3567788888887777752110  1122333444444444443    33323


Q ss_pred             eeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh------CCceeec
Q 013235          402 GDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG------ICALFFS  445 (447)
Q Consensus       402 ~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~------~Gvlv~~  445 (447)
                      ... +..|+++++++...      +   ..++.+.|++      +||++.+
T Consensus       312 ~~~~p~g~~~~~~~l~~~------~---~~~~~~~l~~~~~~~~~gv~v~p  353 (397)
T PRK07568        312 VCEKPKGAFYIIAKLPVD------D---AEDFAKWLLTDFNYNGETVMVAP  353 (397)
T ss_pred             eecCCCcceEEEEecCCC------C---HHHHHHHHHhhcccccceEEEeC
Confidence            323 23456778887321      1   2456666654      5898875

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.78  E-value=1e-16  Score=163.88  Aligned_cols=320  Identities=12%  Similarity=0.060  Sum_probs=185.6

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhCCC--CCceEEEcCCHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANEL  173 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~elae~L~~~~~~--~~~~v~~~~sGseA~e~  173 (447)
                      |...+|+..|...  ++ .+|.+.+++.+.++...  +....+..+...++++.+.+..+.  ..++|++++++++|+..
T Consensus        32 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~  108 (402)
T PRK06107         32 GRSIVDLTVGEPD--FD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL  108 (402)
T ss_pred             cCCEEEcCCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            4457888877753  33 46889999888876421  111122234455666666655443  35679999999999999


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      +++..  ...++.|++.+++|.++........+           ....++.  .....|..|    .+++++.+.   ++
T Consensus       109 ~~~~~--~~~gd~vl~~~p~y~~y~~~~~~~~~-----------~~~~v~~--~~~~~~~~~----~~~l~~~~~---~~  166 (402)
T PRK06107        109 ALMAT--LEAGDEVIIPAPYWVSYPDMVLANDG-----------TPVIVAC--PEEQGFKLT----PEALEAAIT---PR  166 (402)
T ss_pred             HHHHh--cCCCCEEEEecCCCcCHHHHHHHcCC-----------EEEEecC--CcccCCCCC----HHHHHhhcC---cC
Confidence            98643  33567888889988766433322111           1112221  111123233    456666553   22


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHh-CCEEEEeccccCccccCCCcccccc--cCCCCCEE---Eeecccc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEA--HGVVPDIV---TMAKGIG  327 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tGfgr~G~~~~~~~~--~gv~pDiv---t~sK~lg  327 (447)
                      ..+.++..| ++++|.+. +.+.+++|.++|++| |+++|+||+|..+...+..+..+..  .+....++   +|||.++
T Consensus       167 ~~~v~l~~p-~NPtG~~~-s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  244 (402)
T PRK06107        167 TRWLILNAP-SNPTGAVY-SRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYA  244 (402)
T ss_pred             ceEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhc
Confidence            344555556 55667554 778899999999998 9999999999877544421111111  11223455   4699998


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-e
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-R  405 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-r  405 (447)
                       .|+++|++++++++++.+.......+++.+.++++++...|+.  .+.+.++.++.-+.-++.+.+..++++.+.-. .
T Consensus       245 ~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p  322 (402)
T PRK06107        245 MTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP  322 (402)
T ss_pred             CcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC
Confidence             8999999999999998887644445677888888888887741  22232222222111122232322333222222 2


Q ss_pred             ecceeEEEEEeeCCCCCCCCHH---HHHHHHHHH-HhCCceeecc
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKA---ETLYIMDKM-KGICALFFSQ  446 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~---~~~~~~~~l-~~~Gvlv~~~  446 (447)
                      -.|+++++.+..-.....|...   ....+++.| .++||++.++
T Consensus       323 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg  367 (402)
T PRK06107        323 DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQG  367 (402)
T ss_pred             CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCc
Confidence            3477788877311000011110   123566555 5689998753

>PRK08363 alanine aminotransferase; Validated

Probab=99.78  E-value=7.2e-17  Score=164.70  Aligned_cols=308  Identities=14%  Similarity=0.029  Sum_probs=183.1

Q ss_pred             CCCeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----C--CCCceEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLKVVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~~~v~~~~sGs  168 (447)
                      +|..+||+..|.... .++ .++.+.+++.+.+...   ...|. .....+|.+.+++++    +  .+.++|+++++++
T Consensus        28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~  103 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEG---HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVT  103 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHH
Confidence            467899999888642 455 5788999998877542   12232 345566777777664    2  3456899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|+..++...  ...++.|++.+++|.+....+...             |...+..+......|..|    .+++++.+.
T Consensus       104 ~al~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~l~~~~~  164 (398)
T PRK08363        104 EALQLIFGAL--LDPGDEILIPGPSYPPYTGLVKFY-------------GGVPVEYRTIEEEGWQPD----IDDIRKKIT  164 (398)
T ss_pred             HHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHHc-------------CCEEEEeccccccCCcCC----HHHHHhhCC
Confidence            9999998755  236688999999998765544322             222222211111112223    455665553


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecc
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKG  325 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~  325 (447)
                         ++..+.+++.| ++.+|.+. +.+.+++|.++|+++|+++|+||+|..|-..+ .........-...++   +|||.
T Consensus       165 ---~~~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~  238 (398)
T PRK08363        165 ---EKTKAIAVINP-NNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEG-KHVSPGSLTKDVPVIVMNGLSKV  238 (398)
T ss_pred             ---cceEEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC-cccCHHHcCcCCcEEEEecchhc
Confidence               22334445555 55667665 67789999999999999999999998774444 221211122122343   69999


Q ss_pred             cc-CCcccccccc--CHHHHHhhcCCc---ccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHH
Q 013235          326 IG-NGIPLGAVVT--TPEIAEVLTRRN---YFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALK  395 (447)
Q Consensus       326 lg-~G~pigav~~--~~~i~~~l~~~~---~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~  395 (447)
                      ++ .|+++|++++  ++++++.+....   ...+++.|+++..++.+.|+.  .+++.    +.+++..+++.+.|+   
T Consensus       239 ~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l~~~L~---  313 (398)
T PRK08363        239 YFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYIYKRLN---  313 (398)
T ss_pred             cCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHh---
Confidence            65 7999999997  666655543211   113467788888888887752  12233    333444444444433   


Q ss_pred             HhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHH-HHHHHhCCceeec
Q 013235          396 DKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYI-MDKMKGICALFFS  445 (447)
Q Consensus       396 ~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~-~~~l~~~Gvlv~~  445 (447)
                       +++.+.-.+. .|+++++.+....   ...   ..++ .+.|.++||++.+
T Consensus       314 -~~~~~~~~~p~g~~~~~~~l~~~~---~~~---~~~~~~~~l~~~gV~v~~  358 (398)
T PRK08363        314 -EIPGISTTKPQGAFYIFPRIEEGP---WKD---DKEFVLDVLHEAHVLFVH  358 (398)
T ss_pred             -cCCCCEecCCCeEEEEEEEeccCC---CCC---HHHHHHHHHHhCCEEEeC
Confidence             3332322233 3555666663210   001   1234 4556789999865

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.77  E-value=9e-17  Score=164.26  Aligned_cols=314  Identities=14%  Similarity=0.112  Sum_probs=183.0

Q ss_pred             CCCeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~~~sGs  168 (447)
                      .|..++|+..|.... +.=..++.+.+++.+.+....  ...| +.....++.+.|++++..      ..+++++++|++
T Consensus        29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t  106 (403)
T TIGR01265        29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGK--FNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCS  106 (403)
T ss_pred             cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChH
Confidence            467889998887641 111246889998888775431  1123 334455666666666532      346799999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|+..+++...  ..++.|++.+++|-+....+...             |+..+..+......++.|    .+++++.+.
T Consensus       107 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~~~  167 (403)
T TIGR01265       107 QAIEICIEALA--NPGANILVPRPGFPLYDTRAAFS-------------GLEVRLYDLLPEKDWEID----LDGLEALAD  167 (403)
T ss_pred             HHHHHHHHHhC--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEecCCcccCCccC----HHHHHHHhC
Confidence            99999998654  35678999999886443322211             222222221111122234    466666654


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecc
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKG  325 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~  325 (447)
                         ++....+++.| ++++|.+. +.+-+++|.++|+++|+++|+||+|..|...+..+.....+.-.++++   +|||.
T Consensus       168 ---~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  242 (403)
T TIGR01265       168 ---EKTVAIVVINP-SNPCGSVF-SRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKR  242 (403)
T ss_pred             ---cCccEEEEecC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccc
Confidence               22334555556 55666554 667789999999999999999999998865552222222222122344   68999


Q ss_pred             cc-CCccccccccC--HH-----HHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHH
Q 013235          326 IG-NGIPLGAVVTT--PE-----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTA  393 (447)
Q Consensus       326 lg-~G~pigav~~~--~~-----i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~  393 (447)
                      ++ .|+++|+++++  ++     +.+.+.... ..+++.|++++.++.+.|+.- .+.+.    +.+++..+++.+.|  
T Consensus       243 ~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L--  318 (403)
T TIGR01265       243 WVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILENT-PQEFFDGKISVLKSNAELCYEEL--  318 (403)
T ss_pred             cCCCcceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHH--
Confidence            65 79999999873  22     333332211 124566788888887777531 12232    22333333333333  


Q ss_pred             HHHhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeec
Q 013235          394 LKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~  445 (447)
                        +.++.+. ..+..|+++++++.+...   +......++++.| .++||++.+
T Consensus       319 --~~~~~~~~~~p~~g~f~~~~~~~~~~---~~~~~~~~~~~~l~~~~gv~v~p  367 (403)
T TIGR01265       319 --KDIPGLVCPKPEGAMYLMVKLELELF---PEIKDDVDFCEKLVREESVICLP  367 (403)
T ss_pred             --hcCCCceecCCCceeEEEEecccccc---CCCCCHHHHHHHHHHhCCEEEeC
Confidence              3332222 235568999999853210   0000134677775 578999875

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07337 aminotransferase; Validated

Probab=99.77  E-value=1.2e-16  Score=162.47  Aligned_cols=308  Identities=16%  Similarity=0.171  Sum_probs=185.1

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCceEEEcCCHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTEA  170 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~v~~~~sGseA  170 (447)
                      |..++||..|...  ++ .+|.+.+++.+.+....   ..|.. ....+|.+.+++++    +  ...++|++++++++|
T Consensus        29 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~a  102 (388)
T PRK07337         29 GRDIIHMGIGEPD--FT-APEPVVEAAARALRRGV---TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAA  102 (388)
T ss_pred             CCCEEEeCCcCCC--CC-CCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHH
Confidence            3456888777653  33 46889998888775321   12322 22445555555543    2  245679999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..++....  ..++.|++.+++|.+........             +...+..|......|+.|    .+++++.+.  
T Consensus       103 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~----~~~l~~~~~--  161 (388)
T PRK07337        103 LLLACLALV--ERGDEVLMPDPSYPCNRHFVAAA-------------EGRPVLVPSGPAERFQLT----AADVEAAWG--  161 (388)
T ss_pred             HHHHHHHhc--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEeecCCccCCcCC----HHHHHhhcC--
Confidence            998887542  35678999999998664433222             222222222111223334    456666553  


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG  327 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg  327 (447)
                       ++..+.++..| ++++|.+. +.+.+++|.++|+++|+++|+||+|.+|...+ ....  .....++++   +|||.++
T Consensus       162 -~~~~~v~l~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~--~~~~~~~vi~~~S~SK~~~  235 (388)
T PRK07337        162 -ERTRGVLLASP-SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDA-APVS--ALSLGDDVITINSFSKYFN  235 (388)
T ss_pred             -ccceEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCC-CCcC--hhhccCCEEEEEechhhcC
Confidence             33445555666 45667655 67889999999999999999999999886554 2211  112335555   5899997


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCee-
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIG-  402 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~-  402 (447)
                       .|+++|++++++++++.+.........+.+++++.++.+.++.-..+   +..+.+++..+++.+.|++    +++.. 
T Consensus       236 ~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~~~~~  311 (388)
T PRK07337        236 MTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES----LGFKVP  311 (388)
T ss_pred             CchhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh----cCCccc
Confidence             79999999999999887764332334456788887777776410001   1223333444444444433    33321 


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeec
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFS  445 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~  445 (447)
                      ..+..|+++++++.....   |......++++.+ .++||.+.+
T Consensus       312 ~~p~~g~f~~~~~~~~~~---~~~~~~~~~~~~ll~~~gv~v~p  352 (388)
T PRK07337        312 VMPDGAFYVYADCRGVAH---PAAGDSAALTQAMLHDAGVVLVP  352 (388)
T ss_pred             cCCCeeEEEEEecccccC---CCCCCHHHHHHHHHHhCCEEEeC
Confidence            234568999999843110   1111134577665 578999864

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.77  E-value=1.9e-17  Score=166.12  Aligned_cols=289  Identities=13%  Similarity=0.108  Sum_probs=180.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      ..+|+.+|.+  ++| .+|.+.      ..    ....|+.+...+|++++++.++.+.++|+++|+++|++..+++...
T Consensus        29 ~~~~l~~Nen--p~~-~~~~~~------~~----~~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~   95 (351)
T PRK01688         29 GDVWLNANEY--PTA-VEFQLT------QQ----TLNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC   95 (351)
T ss_pred             CceEecCCCC--CCC-CChhhc------cc----ccccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence            3588887776  556 344331      11    1345777777899999999988778899999999999999997542


Q ss_pred             hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                      . .|++.|++.+++|......+...             |...+..|..  ..|+.|    .+++++.+.    +.-..+|
T Consensus        96 ~-~g~~~vli~~P~y~~y~~~~~~~-------------G~~~~~v~~~--~~~~~d----~~~l~~~~~----~~~lv~l  151 (351)
T PRK01688         96 E-PGKDAILYCPPTYGMYSVSAETI-------------GVEIRTVPTL--DNWQLD----LPAIADNLD----GVKVVYV  151 (351)
T ss_pred             C-CCCCEEEEcCCCHHHHHHHHHHc-------------CCEEEEeecC--CCCCCC----HHHHHHhcc----CCcEEEE
Confidence            1 23478999999996544332211             2222222221  123344    455555442    2334566


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGAV  335 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pigav  335 (447)
                      +.|. +++|.+. +.+.+++|.+.|++ ++++|+||+|..|.... .+  .......|.++   +|||.+| .|+++|++
T Consensus       152 ~nPn-NPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~-s~--~~~~~~~~n~iv~rSfSK~~glaGlRiGy~  225 (351)
T PRK01688        152 CSPN-NPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFCPQA-SL--AGWLAEYPHLVILRTLSKAFALAGLRCGFT  225 (351)
T ss_pred             eCCC-CCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcCCCC-Ch--HHHHhhCCCEEEEecchHhhcCHHHHHhHH
Confidence            6665 5556655 66677788877776 68999999998885221 11  12222345655   6999999 79999999


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeecceeEEEE
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLLGVE  414 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~Gl~~gie  414 (447)
                      ++++++++.+...  ...|+.|.+++++|.++|+.-..+.+.++.+.+ ...++.|.+..++++.+. -.+..|+++.++
T Consensus       226 i~~~~~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~-~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~  302 (351)
T PRK01688        226 LANEEVINLLLKV--IAPYPLSTPVADIAAQALSPQGIAAMRERVAEI-NANRQWLIAALKEIPCVEQVFDSETNYILAR  302 (351)
T ss_pred             hCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCeECCCCCcEEEEE
Confidence            9999999888753  245677777777877777521011122222221 122333333333443332 335678888887


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+           ..++.+.|+++||+++.
T Consensus       303 ~~~-----------~~~l~~~L~~~gi~vr~  322 (351)
T PRK01688        303 FTA-----------SSAVFKSLWDQGIILRD  322 (351)
T ss_pred             cCC-----------HHHHHHHHHHCCeEEEE
Confidence            631           35788999999999974

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.77  E-value=2.8e-17  Score=164.15  Aligned_cols=269  Identities=15%  Similarity=0.071  Sum_probs=176.8

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~  177 (447)
                      ..+|||.+|.+  ++|...+.+..   ..+       ..|+.+. .+|.++|++++... .++|+++|+++|++.....+
T Consensus        24 ~~~i~ls~Nen--p~~~~~~~~~~---~~~-------~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~   90 (339)
T PRK06959         24 DAWLDLSTGIN--PHGYPVPPVPA---DAW-------RRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPAL   90 (339)
T ss_pred             hhhceeccCCC--CCCCCCCCCCH---HHH-------HhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHh
Confidence            46899999985  77865333321   122       2367666 89999999998764 37899999999999865432


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                         . +..+|++.+++|.+....+...             |...++.|.        |.    +.+++       .....
T Consensus        91 ---~-~~g~v~v~~P~y~~y~~~~~~~-------------g~~~~~v~~--------~~----~~~~~-------~~~~v  134 (339)
T PRK06959         91 ---L-PRGRVGIAPLAYSEYAPAFARH-------------GHRVVPLDE--------AA----DTLPA-------ALTHL  134 (339)
T ss_pred             ---c-CCCeEEEcCCCcHHHHHHHHHC-------------CCEEEeecc--------cc----hhccc-------cCCEE
Confidence               2 2345888999998766554332             223333221        10    11111       11257


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLG  333 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig  333 (447)
                      +++.|. +++|.+. +.+.+++|.+.|+++++++|+||+|..|...- .+...  .+ .++++   +|||.+| .|+|+|
T Consensus       135 ~l~nPn-NPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~-s~~~~--~~-~~~vi~l~SfSK~~gl~GlRiG  208 (339)
T PRK06959        135 IVVNPN-NPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPAA-SLAAH--TD-RPGLVVLRSVGKFFGLAGVRAG  208 (339)
T ss_pred             EEeCCC-CCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCcc-cchhc--cC-CCCEEEEecChhhcCCcchheE
Confidence            889995 5666655 67778888888999999999999999884321 12211  11 24444   6999999 899999


Q ss_pred             ccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCCeeeEeecce
Q 013235          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (447)
Q Consensus       334 av~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl  409 (447)
                      |+++++++++.+....  .+|+.|.++++++.++|+   +.++.    +.+++..+++.+.|+++    ++  .+...++
T Consensus       209 y~v~~~~li~~l~~~~--~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~----g~--~~~~~~~  277 (339)
T PRK06959        209 FVLAAPALLAALRDAL--GAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAALLRAH----GF--AVHATPL  277 (339)
T ss_pred             EEecCHHHHHHHHHhc--CCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC----CC--CccCcce
Confidence            9999999999887532  457778889888888885   23333    44444444455544443    32  2233577


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++++.+. +          ..++.+.|.++||+++
T Consensus       278 f~~~~~~-~----------~~~l~~~l~~~GI~vr  301 (339)
T PRK06959        278 FSWTDDP-R----------AAALHAALARRGIWTR  301 (339)
T ss_pred             EEEEeCC-C----------HHHHHHHHHhCCeEEE
Confidence            7777652 1          3578999999999996

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.77  E-value=6.4e-17  Score=161.43  Aligned_cols=279  Identities=15%  Similarity=0.142  Sum_probs=179.0

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      .|..++||..|..  +++ .+|.+.+++.+.+....  ...|+.....+|.+.+++++..+.++|++++++++++..+++
T Consensus        16 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~   90 (337)
T PRK03967         16 EGNYRIWLDKNEN--PFD-LPEELKEEIFEELKRVP--FNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVK   90 (337)
T ss_pred             CCCceEEecCCCC--CCC-CCHHHHHHHHHHhhcCc--cccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence            4556789888765  455 56899999988775421  234666667889999999987667889999999999987766


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ..    .++.|++..++|......+..             .|+..++.|..  ..|+.|    .+++++.+.    +...
T Consensus        91 ~~----~gd~V~v~~P~y~~~~~~~~~-------------~g~~~~~v~~~--~~~~~d----~~~l~~~~~----~~~~  143 (337)
T PRK03967         91 LF----EGKHIVITPPTFGMYSFYAKL-------------NGIPVIDVPLK--EDFTID----GERIAEKAK----NASA  143 (337)
T ss_pred             Hh----CCCeEEEeCCChHHHHHHHHH-------------cCCeEEEeecC--CCCCcC----HHHHHHhcc----CCCE
Confidence            42    457899999999643322211             12333332221  123334    345555432    1234


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      .++..| ++++|.+.+    .++|.++++ +++++|+||+|..|.. . ...  ...+..++++   +|||.++ .|+|+
T Consensus       144 v~~~~P-~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~-~~~--~~~~~~~~vi~l~S~SK~~~l~GlRi  213 (337)
T PRK03967        144 VFICSP-NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-K-SLI--GLIDEYPNLILLRTFSKAFGLAGIRA  213 (337)
T ss_pred             EEEeCC-CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-c-chH--HHHhhCCCEEEEecchHhhcchhhhh
Confidence            556666 666777665    567778884 7999999999998842 1 121  1112224444   5999999 89999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHhcCCeeeEeecce
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN---NAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl  409 (447)
                      ||+++++++++.+....  .+++.+.++..++.+.|+..  +.+.+   ...+..+.+.+.|.    ++    ..++.|+
T Consensus       214 G~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~----~~----~~~~~~~  281 (337)
T PRK03967        214 GYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHY--DLIEERIDYIIKERERVRRELG----EY----AYPSDAN  281 (337)
T ss_pred             eeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHhc----cC----cCCCCCc
Confidence            99999999988876432  35667888888888777521  11222   22222223333332    22    2356688


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++++++               .+.+.|+++||+++
T Consensus       282 ~~~~~~---------------~~~~~l~~~gi~v~  301 (337)
T PRK03967        282 FLLLKL---------------DAYDYLLENGIVVR  301 (337)
T ss_pred             EEEEhH---------------HHHHHHHHCCEEEE
Confidence            887765               16788889999986

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.77  E-value=2.4e-16  Score=158.96  Aligned_cols=285  Identities=18%  Similarity=0.135  Sum_probs=175.5

Q ss_pred             CCCCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc--CCCeEEE
Q 013235          114 GHCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--GCNDIIS  189 (447)
Q Consensus       114 Gh~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t--~~~~ii~  189 (447)
                      -|.||.+.+++.++++...+....++  .....+++++|++.++.+...++|++||++|+..+++.++...  ++++|++
T Consensus        30 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~  109 (371)
T PRK13520         30 TEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVV  109 (371)
T ss_pred             cCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEe
Confidence            46899999999998875422222232  2334688899999886544567899999999999999887542  3567888


Q ss_pred             EcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (447)
Q Consensus       190 ~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~  269 (447)
                      .+.++..+...+ ...+          ..+..++.+.    .+..|    .++|++.+..   +....+++.+ .+++|.
T Consensus       110 ~~~~h~s~~~~~-~~~g----------~~~~~v~~~~----~~~~d----~~~l~~~i~~---~~~~vi~~~~-~~~tG~  166 (371)
T PRK13520        110 PESAHFSFDKAA-DMLG----------VELRRAPLDD----DYRVD----VKAVEDLIDD---NTIGIVGIAG-TTELGQ  166 (371)
T ss_pred             cCcchHHHHHHH-HHcC----------ceEEEecCCC----CCcCC----HHHHHHHHhh---CCEEEEEEcC-CcCCcc
Confidence            777654322211 1110          1223333221    11123    5777777753   2333333443 456788


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEeccccCcc----ccCCCcccccccCCCCCEEEee--ccccCCcccccccc-CHHHH
Q 013235          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFA----RTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVT-TPEIA  342 (447)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg----r~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~-~~~i~  342 (447)
                      +.+    +++|.++|+++|+++|+||+|+++.    +.+ ..|.+...  ..|.++++  |...+|.|+|+++. +++++
T Consensus       167 ~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~-~~~~~~~~--~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~  239 (371)
T PRK13520        167 VDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDP-PNFDFSLP--GVDSITIDPHKMGLAPIPAGGILFRDESYL  239 (371)
T ss_pred             cCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCC-CCccccCC--CCceEEECCccccCccCCceEEEEcCHHHH
Confidence            876    9999999999999999999998763    111 11222222  24666543  64445689987775 55677


Q ss_pred             HhhcCC-cc---------cccCCCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecce
Q 013235          343 EVLTRR-NY---------FNTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (447)
Q Consensus       343 ~~l~~~-~~---------~~T~~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl  409 (447)
                      +.+... .+         .+|.  ++..++++.++|+.+.+++   +.++..++.++|+++|+++  .+..+  +.....
T Consensus       240 ~~l~~~~~~~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~  313 (371)
T PRK13520        240 DALAVDTPYLTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER--GFEPV--IEPVLN  313 (371)
T ss_pred             HhhcccCccccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC--CCEEe--cCCCce
Confidence            765421 11         1122  3455777788888776544   6677888888888888765  23211  122344


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+.+.           ...++.+.|.++||++..
T Consensus       314 ~v~~~~~-----------~~~~v~~~L~~~gi~v~~  338 (371)
T PRK13520        314 IVAFDDP-----------NPDEVREKLRERGWRVSV  338 (371)
T ss_pred             EEEEecC-----------CHHHHHHHHHHCCceecc
Confidence            6666552           135788899999998853

>PRK06855 aminotransferase; Validated

Probab=99.77  E-value=1.2e-16  Score=164.80  Aligned_cols=291  Identities=13%  Similarity=0.106  Sum_probs=163.7

Q ss_pred             CCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC------CCCCceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~sGse  169 (447)
                      |+..+++..|.... .+. .++.+.+++.+.+... . ...|. .....+|.+.+++++      +.+.++|++++++++
T Consensus        31 g~~~~~~~~G~p~~-~~~~~p~~~~~a~~~~~~~~-~-~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~  107 (433)
T PRK06855         31 GVKITWENIGDPIA-KGEKIPDWMKEIVAELVMDD-K-SYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGD  107 (433)
T ss_pred             cccccccccCCCcc-cCCCCCHHHHHHHHHHhhcC-C-CCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHH
Confidence            44555554443211 122 4667777877766442 1 11222 233444555555443      234568999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..++.+   ..+++.|++.+++|++.........            ++..+..|......|+.|    .++|++.+..
T Consensus       108 al~~~~~l---~~~Gd~Vlv~~P~Y~~~~~~~~~~~------------g~~~v~v~~~~~~~~~~d----~~~l~~~~~~  168 (433)
T PRK06855        108 AIAKIYGL---LRREARVIGPSPAYSTHSSAEAAHA------------GYPPVTYRLDPENNWYPD----LDDLENKVKY  168 (433)
T ss_pred             HHHHHHHh---cCCCCeEEEeCCCCchHHHHHHHhc------------CCeEEEEecccccCCCCC----HHHHHHHHhc
Confidence            99988742   3456889999999998543221111            222222222111223334    5778777753


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEE--Eeeccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIV--TMAKGI  326 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDiv--t~sK~l  326 (447)
                      . ++..+.+++.| ++++|.+. +++.+++|.++|++||+++|.||+|..|...+..+..+ +...-.+-|+  +|||.+
T Consensus       169 ~-~~~~~i~l~~P-~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~  245 (433)
T PRK06855        169 N-PSIAGILLINP-DNPTGAVY-PKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKEL  245 (433)
T ss_pred             C-CCceEEEEECC-CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCcccc
Confidence            2 22345667777 56666654 78999999999999999999999999886555222121 1111011133  699999


Q ss_pred             c-CCccccccccC-----H---HHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---H
Q 013235          327 G-NGIPLGAVVTT-----P---EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA---L  394 (447)
Q Consensus       327 g-~G~pigav~~~-----~---~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~---l  394 (447)
                      + .|+++||++++     +   ++++.+.... ....+.+.+++.++.+.|+   +..+.++++++.+.++++...   .
T Consensus       246 ~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~  321 (433)
T PRK06855        246 PWPGSRCGWIEVYNADKDEVFKKYINSILNAK-MIEVCSTTLPQMAIPRIMS---HPEYKNYLKERNKRYEKRSNIAYEK  321 (433)
T ss_pred             CCCcceEEEEEEeCCchhhHHHHHHHHHHHhh-ccccCCChHHHHHHHHhhc---CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            7 89999999972     2   2333332211 1234567788877777663   333333343333333333322   2


Q ss_pred             HHhcCCeeeEee-cceeEEEEEee
Q 013235          395 KDKYGIIGDVRG-RGFLLGVEFVT  417 (447)
Q Consensus       395 ~~~~~~i~~vrg-~Gl~~giel~~  417 (447)
                      .++++.+.-.+. .|+++++.+.+
T Consensus       322 L~~~~~~~~~~p~gg~~~w~~l~~  345 (433)
T PRK06855        322 LKDVPGLKVNRTNGAFYMTVVFED  345 (433)
T ss_pred             HhcCCCeeccCCCeeEEEeecccc
Confidence            233322222233 46889998843

>PRK08354 putative aminotransferase; Provisional

Probab=99.76  E-value=1.8e-16  Score=156.38  Aligned_cols=270  Identities=14%  Similarity=0.106  Sum_probs=174.2

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      +...+|||..|..  +++  +|.+.+++.+.++..    ..|+.  ...+.++++++++   ++|+++++++||+..++.
T Consensus         6 ~~~~~i~l~~~~n--p~~--p~~~~~a~~~~~~~~----~~yp~--~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~   72 (311)
T PRK08354          6 REEGLIDFSASVN--PYP--PEWLDEMFERAKEIS----GRYTY--YEWLEEEFSKLFG---EPIVITAGITEALYLIGI   72 (311)
T ss_pred             CccceeEecCCCC--CCC--CHHHHHHHHHHHHHh----hcCCC--hHHHHHHHHHHHC---CCEEECCCHHHHHHHHHH
Confidence            4456999998764  444  588999988776543    23442  4678889998875   358899999999987764


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      +.   .+++.|++.+++|.+....+...             |...+..+        .|    .+.+++.+.+    ...
T Consensus        73 ~~---~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~~~--------~d----~~~l~~~~~~----~~~  120 (311)
T PRK08354         73 LA---LRDRKVIIPRHTYGEYERVARFF-------------AARIIKGP--------ND----PEKLEELVER----NSV  120 (311)
T ss_pred             hh---CCCCeEEEeCCCcHHHHHHHHHc-------------CCEEeecC--------CC----HHHHHHhhcC----CCE
Confidence            32   25688999999998776655433             22222211        23    4556665541    235


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      .+++.|. +++|.+. +.+.+++|.++|+++|+++|+||++.+|...+ ..  ..    .+.++   +|||.++ .|+|+
T Consensus       121 vi~~~P~-NPTG~~~-~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~-~~--~~----~~~vi~~~S~SK~~~l~GlRi  191 (311)
T PRK08354        121 VFFCNPN-NPDGKFY-NFKELKPLLDAVEDRNALLILDEAFIDFVKKP-ES--PE----GENIIKLRTFTKSYGLPGIRV  191 (311)
T ss_pred             EEEecCC-CCCCCcc-CHHHHHHHHHHhhhcCcEEEEeCcchhccccc-cc--cC----CCcEEEEeccHhhcCCcccee
Confidence            7888885 5667655 78889999999999999999999999885443 11  11    22333   6999999 89999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g  412 (447)
                      |++++   +.+.+....  ..+..+..+.+++.+.++    +. .+++++..+++++..+.+....    .+.+.|.|+.
T Consensus       192 G~~v~---~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~  257 (311)
T PRK08354        192 GYVKG---FEEAFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKAL----YVKSDANFFI  257 (311)
T ss_pred             eeeee---hHHHHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHhc----CCCCCCcEEE
Confidence            99998   344444322  334555655555544443    21 2333444444455444443222    1345666666


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.        +   ..++++.|+++||++.+
T Consensus       258 ~~~~--------~---~~~~~~~l~~~gv~v~~  279 (311)
T PRK08354        258 KDVG--------D---AEKFVEFLKRNGILVRD  279 (311)
T ss_pred             EECC--------C---HHHHHHHHHHCCeEEEe
Confidence            6542        1   24688889999999875

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.76  E-value=1e-16  Score=164.14  Aligned_cols=311  Identities=14%  Similarity=0.086  Sum_probs=178.5

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccc-cchHHHHHHHHHHHhC------CCCCceEEEcCCHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLY-LNHAIADFAEALASKM------PGNLKVVFFTNSGT  168 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~-~~~~~~elae~L~~~~------~~~~~~v~~~~sGs  168 (447)
                      +..++|+..|..  .++ .+|.+.+++.+.+.....  ....| +.....+|.+.|++++      +.+.++|+++++++
T Consensus        33 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~  109 (409)
T PRK07590         33 EAKIIRLGIGDV--TQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK  109 (409)
T ss_pred             CCceEEecCcCC--CCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence            556788887765  344 568899999888775321  11223 3444556666666653      44567899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC-eEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-VHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      +++...+.   ...+++.|++.+++|.+....+........ .  .+... ...++.|....+.|..|       ++   
T Consensus       110 ~al~~l~~---~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~-~--~~~~~~~~~~~v~~~~~~~~~~d-------~~---  173 (409)
T PRK07590        110 CDTGNILD---IFGPDNTIAVTDPVYPVYVDTNVMAGRTGE-A--NEDGRYSGIVYLPCTAENNFVPE-------LP---  173 (409)
T ss_pred             HHHHHHHH---hcCCCCEEEEeCCCCcchHHHHHHcCCccc-c--cccccccceeEeecccccCCccc-------Cc---
Confidence            99987543   234678899999999887755544322100 0  00000 00122221111112111       11   


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC-EE---Eee
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-IV---TMA  323 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD-iv---t~s  323 (447)
                       .  ++.-+.+++.| ++++|.+. +.+.+++|.++|++|+++||.||+|..|-..+.........+-.++ ++   +||
T Consensus       174 -~--~~~k~i~l~nP-~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfS  248 (409)
T PRK07590        174 -E--EKVDIIYLCFP-NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFS  248 (409)
T ss_pred             -c--cCceEEEEeCC-CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCc
Confidence             1  11224445566 56667665 7888999999999999999999999988544421111111111122 23   699


Q ss_pred             cccc-CCccccccccCHHHHHhhc-----------CCcccccC-CCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLT-----------RRNYFNTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYL  387 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~-----------~~~~~~T~-~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l  387 (447)
                      |.++ .|+++|++++++++++.+.           ......++ +.+.+++.++.++|+.-.+   +++.+.+++..+.+
T Consensus       249 K~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l  328 (409)
T PRK07590        249 KTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKII  328 (409)
T ss_pred             cccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            9998 8999999999999887321           01112333 4567777777776641001   11233333333444


Q ss_pred             HHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          388 KERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .+.|++    ++ +.-..+ .|+++++++.+.        ....++++.|+ +.||++.+
T Consensus       329 ~~~L~~----~~-~~~~~~~g~~f~wi~~~~~--------~~~~~~~~~l~~~~gv~v~p  375 (409)
T PRK07590        329 REGLES----AG-FEVYGGVNAPYIWVKTPDG--------MSSWDFFDKLLQEANVVGTP  375 (409)
T ss_pred             HHHHHh----cC-CceecCCcceEEEEECCCC--------CCHHHHHHHHHHHCCEEEeC
Confidence            444433    33 222333 478889987431        01345777776 56998864

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.76  E-value=1e-16  Score=161.99  Aligned_cols=272  Identities=13%  Similarity=0.092  Sum_probs=159.6

Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~  219 (447)
                      ++...++.|.|++++..  +.+.+++||++++..++....  ..++.|++....++... ..+...            |+
T Consensus        50 ~~~~~~~~e~lA~~~g~--~~~~i~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~h~s~~-~~~~~~------------g~  112 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGM--DEARVTHGAREGKFAVMHALC--KEGDWVVLDGLAHYTSY-VAAERA------------GL  112 (370)
T ss_pred             chHHHHHHHHHHHHhCC--CceEEECChHHHHHHHHHHhh--CCCCEEEECCcccHHHH-HHHHHc------------CC
Confidence            34677888999999854  556788999999999887553  34566776556654332 222222            22


Q ss_pred             EeecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      ....+|......+..|    .++|++.+....   ..++.+|+++.+.++.|.+.+    +++|.++|+++|+++|+||+
T Consensus       113 ~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea  184 (370)
T TIGR02539       113 NVKEVPHTGHPEYKVD----PEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCA  184 (370)
T ss_pred             EEEEEecCCcccCCcC----HHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECc
Confidence            2222221111123335    566766664311   124567777767777888777    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEE--EeeccccCCccccccccCHHHHHhhcCCcccc------cCCC--ChHHHHHHHH
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN------TFGG--NPVCTAAGHA  366 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~~~~------T~~~--np~a~aaala  366 (447)
                      |. +|..+.     ...+..+|++  +++|.++.|.|+|++++++++++.+.......      .+++  ...+++++.+
T Consensus       185 ~~-~g~~~~-----~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (370)
T TIGR02539       185 YT-VGRMPV-----SAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMA  258 (370)
T ss_pred             cc-cCCcCC-----CHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHH
Confidence            96 443221     1112236766  68999997778999999999999887533110      1111  1235666666


Q ss_pred             HHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce-ee
Q 013235          367 VLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL-FF  444 (447)
Q Consensus       367 ~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl-v~  444 (447)
                      +|+.+.+. +...+..+..++|+++|+++  .+..+........++.+++..-......+...+..+.+.|+++||+ ++
T Consensus       259 al~~~~~~l~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir  336 (370)
T TIGR02539       259 SFPHVVERVKRWDEEVKKTRWFVAELEDI--GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR  336 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc
Confidence            77643221 11222333356788888775  2222112234566666654110000000111235689999999997 54

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK09265 aminotransferase AlaT; Validated

Probab=99.75  E-value=3.1e-16  Score=160.36  Aligned_cols=310  Identities=13%  Similarity=0.088  Sum_probs=181.5

Q ss_pred             CCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC------CCCCceEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM------PGNLKVVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~------~~~~~~v~~~~sGs  168 (447)
                      .|+..+||..|... ++++ .++++.+++.+.+...    ..|..+ ...+|.+.+++.+      +...++|+++++++
T Consensus        31 ~~~~~i~l~~g~p~-~~~~~~~~~i~~~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~  105 (404)
T PRK09265         31 EGHKILKLNIGNPA-PFGFEAPDEILRDVIRNLPTA----QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVS  105 (404)
T ss_pred             cCCCeEEecCCCCC-cCCCCCCHHHHHHHHHHhhcC----CCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChH
Confidence            56688999877543 3454 4678888888765432    223322 3456777777765      34567899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +++..+++...  .+++.|++.+++|......+...             |...+..+......|..|    .+++++.+.
T Consensus       106 ~~l~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~l~~~~~  166 (404)
T PRK09265        106 ELIVMAMQALL--NNGDEVLVPAPDYPLWTAAVSLS-------------GGKPVHYLCDEEAGWFPD----LDDIRSKIT  166 (404)
T ss_pred             HHHHHHHHHhC--CCCCEEEEeCCCCcChHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHhcc
Confidence            99999887542  35678999999997654433222             222222211111122233    456666553


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC--EE---Eee
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD--IV---TMA  323 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD--iv---t~s  323 (447)
                         ++..+.+++.| ++++|.+. +.+-+++|.++|+++|+++|+||+|.+|-..+........  ..++  ++   +||
T Consensus       167 ---~~~~~v~l~~P-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~~vi~~~S~S  239 (404)
T PRK09265        167 ---PRTKAIVIINP-NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIAS--LAPDLLCVTFNGLS  239 (404)
T ss_pred             ---ccceEEEEECC-CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHH--cCCCceEEEEecch
Confidence               22334556666 55677665 6788999999999999999999999988544421111111  1222  33   489


Q ss_pred             cccc-CCcccccccc--CHH----HHHhhcCCcccccCCCChHHHHHHHHHHHHHhh-hhHHH---HHHHHHHHHHHHHH
Q 013235          324 KGIG-NGIPLGAVVT--TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQN---NAHVVGSYLKERLT  392 (447)
Q Consensus       324 K~lg-~G~pigav~~--~~~----i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-~~l~~---~~~~~g~~l~~~L~  392 (447)
                      |.++ .|+++|++++  +++    +++.+... ...+++.|.++..++.++|...+. +++.+   ++.+..+.+.+   
T Consensus       240 K~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~---  315 (404)
T PRK09265        240 KAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWE---  315 (404)
T ss_pred             hhccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH---
Confidence            9996 6999999995  444    33333211 123566778888888887742111 11221   22222333333   


Q ss_pred             HHHHhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          393 ALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       393 ~l~~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                       ..++++.+. ..+..|+++++.+....... ..  ....+.+.|.++||++.+
T Consensus       316 -~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~-~~--~~~~~~~~l~~~gv~v~p  365 (404)
T PRK09265        316 -LLNAIPGVSCVKPKGALYAFPKLDPKVYPI-HD--DEQFVLDLLLQEKVLLVQ  365 (404)
T ss_pred             -HHhcCCCCcccCCCcceEEEEEecccccCC-CC--HHHHHHHHHHhCCEEEEC
Confidence             333343232 22445889988884321000 01  123466788899999864

>PLN02672 methionine S-methyltransferase

Probab=99.75  E-value=4.8e-16  Score=171.38  Aligned_cols=325  Identities=10%  Similarity=0.032  Sum_probs=191.6

Q ss_pred             EEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC---ceEEEcCCHHH
Q 013235           93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL---KVVFFTNSGTE  169 (447)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~---~~v~~~~sGse  169 (447)
                      +.+.+|..+|++..|..  .++ .+|.|.+|+.+.+....+  .....+...++++.+++..+...   ++|+++++.++
T Consensus       691 ~~~~~g~~vI~LsinE~--d~p-pPp~V~eAi~eal~~~~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~e  765 (1082)
T PLN02672        691 VSGSQESSLIHMDVDES--FLP-VPSAVKASIFESFVRQNI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLA  765 (1082)
T ss_pred             CcccCCCCEEEEeCCCC--CCC-CCHHHHHHHHHHHhhcCC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHH
Confidence            45556788999988776  556 789999999887765433  11123457789999988765443   37889999888


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ++..+++...  .+++.|++..++|......+...             |...+..|......|..|    .+++++.+..
T Consensus       766 lL~lll~aLl--~pGD~VLVp~PtY~~Y~~~a~~~-------------Ga~vv~Vpl~~e~gf~lD----~d~Le~al~~  826 (1082)
T PLN02672        766 LFNKLVLCCV--QEGGTLCFPAGSNGTYVSAAKFL-------------KANFRRIPTKSSDGFKLT----AKTLASTLET  826 (1082)
T ss_pred             HHHHHHHHHc--CCCCEEEEeCCChHHHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHHhcc
Confidence            8888776443  25688999999998766554433             233333332212234334    4667776642


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC--ccccc----ccC-CCC--CEE
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGFE----AHG-VVP--DIV  320 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~--~~~~~----~~g-v~p--Div  320 (447)
                      .  .+.+.+|+.|.++++|.+. +++.+++|.++|++||++||+||+|.++-..+..  .+.+.    .++ ..+  .++
T Consensus       827 ~--~~~~I~L~nPnhNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVI  903 (1082)
T PLN02672        827 V--KKPWVYISGPTINPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVA  903 (1082)
T ss_pred             C--CCCEEEEECcCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEE
Confidence            1  2346888899767777655 8899999999999999999999999987665521  11111    111 112  233


Q ss_pred             ---Eeecccc-CCccccccccC-HHHHHhhcCCcc-cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---H
Q 013235          321 ---TMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER---L  391 (447)
Q Consensus       321 ---t~sK~lg-~G~pigav~~~-~~i~~~l~~~~~-~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~---L  391 (447)
                         +|||.++ +|+++||++++ +++++.+..... ...+..+.++.+++++.++ -+..++.+++++..+.++++   +
T Consensus       904 vL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~-~~~~~~~~~l~e~r~~Lk~rRd~L  982 (1082)
T PLN02672        904 LLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKN-QKSSDLLDGVAEQKKILKSRAERL  982 (1082)
T ss_pred             EEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHH
Confidence               5899988 69999999986 458887754211 1112222333333333331 01222333333332222222   2


Q ss_pred             HHHHHhcCCeeeEee-cceeEEEEEeeCCC----CCCCC-----HHHHHHHHHHHHhC-Cceeecc
Q 013235          392 TALKDKYGIIGDVRG-RGFLLGVEFVTDRQ----LKTPA-----KAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg-~Gl~~giel~~~~~----~~~p~-----~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                      .+..++++. .-.+. .|+++++.+..-..    ...++     .....++++.|+++ ||++.++
T Consensus       983 ~e~L~~~Gi-~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PG 1047 (1082)
T PLN02672        983 KETLEACGW-DVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSS 1047 (1082)
T ss_pred             HHHHHHCCC-eEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecC
Confidence            222233332 23344 36666665421000    00010     01145788888876 9998753

>PRK07908 hypothetical protein; Provisional

Probab=99.75  E-value=8.1e-16  Score=154.17  Aligned_cols=282  Identities=12%  Similarity=0.094  Sum_probs=174.2

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      +..+|||..|..  +++ .++.+.+++.+.+...    ..|+. ....+|.+.++++++.+.++|+++++++||+..+++
T Consensus        21 ~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~----~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~   93 (349)
T PRK07908         21 GPGLLDFAVNVR--HDT-PPEWLRERLAARLGDL----AAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR   93 (349)
T ss_pred             CCCeEEecCCCC--CCC-CCHHHHHHHHHHhhHh----hcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh
Confidence            578999998775  345 6788999998887653    22443 356789999999887777899999999999998887


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                       .    ..+++++..++|-+....+..             .|+..+..|...  .|+.|    .+.+    .   + ++.
T Consensus        94 -l----~~~~viv~~P~y~~~~~~~~~-------------~G~~i~~v~~~~--~~~~d----~~~l----~---~-~~~  141 (349)
T PRK07908         94 -L----RPRRAAVVHPSFTEPEAALRA-------------AGIPVHRVVLDP--PFRLD----PAAV----P---D-DAD  141 (349)
T ss_pred             -c----CCCeEEEeCCCChHHHHHHHH-------------cCCEEEeeccCc--ccCcC----hhHh----c---c-CCC
Confidence             2    235777888988655432211             133333333221  13333    1222    2   1 233


Q ss_pred             EEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcc
Q 013235          257 GFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIP  331 (447)
Q Consensus       257 avi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~p  331 (447)
                      ++++ .| ++++|.+.+    .++|.++|++ ++++|+||+|..|. .| ........+ .++++   +|||.++ .|++
T Consensus       142 ~i~l~np-~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~-~~-~~~~l~~~~-~~~~i~i~S~SK~~~l~GlR  212 (349)
T PRK07908        142 LVVIGNP-TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADAV-PG-EPESLAGDD-LPGVLVLRSLTKTWSLAGLR  212 (349)
T ss_pred             EEEEcCC-CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhc-cC-Ccccccccc-CCCEEEEeecccccCCccce
Confidence            4444 55 566777775    5678888864 78899999998773 23 222221122 23444   5799999 8999


Q ss_pred             ccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-ec
Q 013235          332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GR  407 (447)
Q Consensus       332 igav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~  407 (447)
                      +|++++++++++.+....  ..|..+++..+++.+.++--..   ++..++.++..+++.+.|++    ++ +.-.. ..
T Consensus       213 iG~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~-~~~~~p~~  285 (349)
T PRK07908        213 VGYALGAPDVLARLTRGR--AHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA----VG-ARVVDPAA  285 (349)
T ss_pred             eeeeecCHHHHHHHHhcC--CCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh----CC-cEeccCCC
Confidence            999999999998876432  2355566666555444420000   11233333444444444433    33 22222 56


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |+++++++.+           ...+.+.|.++||++.+
T Consensus       286 g~~~~~~~~~-----------~~~~~~~l~~~gI~v~~  312 (349)
T PRK07908        286 APFVLVRVPD-----------AELLRKRLRERGIAVRR  312 (349)
T ss_pred             ceEEEEECCc-----------HHHHHHHHHhCCEEEEE
Confidence            8899888731           24677888999999875

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.74  E-value=3.6e-16  Score=163.35  Aligned_cols=232  Identities=16%  Similarity=0.137  Sum_probs=147.4

Q ss_pred             CHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC------CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEE
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIIS  189 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~  189 (447)
                      +..+.+++.+.++........|. .....+|.+.+++++      +.+.++|++++++++|+..+++.... ..++.|++
T Consensus        90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~~gD~Vlv  168 (481)
T PTZ00377         90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG-DPSDGVMI  168 (481)
T ss_pred             CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc-CCCCEEEE
Confidence            44677777665555321122233 224455666666553      23457899999999999999986531 25688999


Q ss_pred             EcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCCeE-EEEEccccCC
Q 013235          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVA-GFLSESIQGV  266 (447)
Q Consensus       190 ~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a-avi~Epi~~~  266 (447)
                      ..++|.+....+...             |...++.|......|+.|    .++|++.+....  ..++. .+++.| +++
T Consensus       169 ~~P~y~~y~~~~~~~-------------g~~~v~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~l~l~~P-~NP  230 (481)
T PTZ00377        169 PIPQYPLYSAAITLL-------------GGKQVPYYLDEEKGWSLD----QEELEEAYEQAVRNGITPRALVVINP-GNP  230 (481)
T ss_pred             CCCCchhHHHHHHHc-------------CCEEEEEEeccccCCCCC----HHHHHHHHHHHHhcCCCeeEEEEECC-CCC
Confidence            999998766544332             222233332222234445    566766664311  11444 566666 566


Q ss_pred             CceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC-CCcccccc--cCCCC------CEE---Eeeccc-c-CCccc
Q 013235          267 GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGFEA--HGVVP------DIV---TMAKGI-G-NGIPL  332 (447)
Q Consensus       267 gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G-~~~~~~~~--~gv~p------Div---t~sK~l-g-~G~pi  332 (447)
                      +|.+. +.+.+++|.++|++||+++|.||+|..+...+ ..+-.+..  .+..+      .++   +|||.+ + .|+|+
T Consensus       231 TG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi  309 (481)
T PTZ00377        231 TGQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG  309 (481)
T ss_pred             CCcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce
Confidence            77665 78899999999999999999999998875432 11212110  11222      244   489986 5 69999


Q ss_pred             ccccc---CHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          333 GAVVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       333 gav~~---~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      ||+++   ++++++.+.... ..+++.|++++.++.++|+
T Consensus       310 G~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~  348 (481)
T PTZ00377        310 GYFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCN  348 (481)
T ss_pred             EEEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhC
Confidence            99986   899988776532 2345688889998888884

>PLN02721 threonine aldolase

Probab=99.74  E-value=4.4e-16  Score=155.95  Aligned_cols=300  Identities=17%  Similarity=0.131  Sum_probs=175.6

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      +++||.+|...    ..+|.+.+|+.+.  ...+. ..|+++...+|.++|++++..  +.++++++|++++..++....
T Consensus         6 ~~~~~~~~~~~----~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~l~~~la~~~~~--~~~~~~~~Gs~a~~~~l~~~~   76 (353)
T PLN02721          6 RVVDLRSDTVT----KPTDAMRAAMANA--EVDDD-VLGYDPTALRLEEEMAKIFGK--EAALFVPSGTMGNLISVLVHC   76 (353)
T ss_pred             hhhhhhccccc----CCCHHHHHHHHhc--cCCCc-ccCCCHHHHHHHHHHHHHhCC--ceeEEecCccHHHHHHHHHHc
Confidence            57899988875    2678999988653  12221 235577789999999999954  457888999999988877543


Q ss_pred             hhcCCCeEEEEcCCcccCchh--hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCC
Q 013235          180 LYTGCNDIISLRNAYHGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGH  254 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~--~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~  254 (447)
                      . .+++.|++.+++|......  ...            ..|+.....|...  .+..|    .+++++.+.+..   ..+
T Consensus        77 ~-~~gd~Vl~~~~~~~~~~~~~~~~~------------~~g~~~~~v~~~~--~~~~d----~~~l~~~i~~~~~~~~~~  137 (353)
T PLN02721         77 D-VRGSEVILGDNSHIHLYENGGIST------------LGGVHPRTVKNNE--DGTMD----LDAIEAAIRPKGDDHFPT  137 (353)
T ss_pred             c-CCCCeEEEcCccceehhcccchhh------------hcCceeEecCCCc--CCCcC----HHHHHHHHHhccCCCCCc
Confidence            2 1457888888886322211  111            1133333222211  12234    567777775321   136


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-CcccccccCCCCC--EEEeeccccCCcc
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAHGVVPD--IVTMAKGIGNGIP  331 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~gv~pD--ivt~sK~lg~G~p  331 (447)
                      ++++++++++++.|...++.+.+++|.++|++||+++|+||++. ++-... .. .........|  +++++|++++  |
T Consensus       138 ~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~-~~~~~~~~~d~~~~s~sK~l~~--~  213 (353)
T PLN02721        138 TRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGV-PVHRLVKAADSVSVCLSKGLGA--P  213 (353)
T ss_pred             ceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCC-CHHHHhhhCCEEEEecccccCC--c
Confidence            78899988766543344578899999999999999999999985 321100 00 0111111234  4468899874  5


Q ss_pred             ccc-cccCHHHHHhhcCCcccccCCCC----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee--eE
Q 013235          332 LGA-VVTTPEIAEVLTRRNYFNTFGGN----PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG--DV  404 (447)
Q Consensus       332 iga-v~~~~~i~~~l~~~~~~~T~~~n----p~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~--~v  404 (447)
                      +|+ +++++++++.+...  ..++++.    +..+++++.+++...+  ..++..++.+++.+.|+++    +.+.  -.
T Consensus       214 ~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~L~~~----~~~~~~~~  285 (353)
T PLN02721        214 VGSVIVGSKSFIRKAKRL--RKTLGGGMRQVGVLAAAALVALQENVP--KLEDDHKKAKLLAEGLNQI----KGLRVNVA  285 (353)
T ss_pred             eeeEEecCHHHHHhHHHH--HHhcCCCeehhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhC----CCcEEecC
Confidence            676 56788887765431  1222221    2333444445543211  1233344556666666554    2221  11


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +..+.|+.+++....    +  .....+.+.|.++||.+.+
T Consensus       286 ~~~~~~~~~~~~~~~----~--~~~~~~~~~L~~~gi~v~~  320 (353)
T PLN02721        286 AVETNIVYFDITDGS----R--ITAEKLCKSLEEHGVLLMP  320 (353)
T ss_pred             CccceEEEEEccCCc----c--ccHHHHHHHHHhCCcEEec
Confidence            234567777774210    0  1246789999999999874

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.74  E-value=1.3e-16  Score=160.99  Aligned_cols=269  Identities=15%  Similarity=0.111  Sum_probs=163.5

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      .|+++...+|.+.|+++++.+.++|++++++++++..+++.... .+++.|++.+++|-.....+..             
T Consensus        55 ~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~-~g~~~vlv~~p~y~~~~~~~~~-------------  120 (364)
T PRK04781         55 RYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV-PGRDAVLVTPPVFGMYAVCARL-------------  120 (364)
T ss_pred             cCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHHHHH-------------
Confidence            35555567899999999877778899999999999999875421 2335677777876422221111             


Q ss_pred             CCeEeecCCCC-cCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          217 TGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       217 ~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      .|...++.|.. ....|..|    .+++++.+..  + ++.++++...++++|.+. +.+.++++.+.|+ +++++|+||
T Consensus       121 ~g~~~~~v~~~~~~~~~~~d----~~~l~~~~~~--~-~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~De  191 (364)
T PRK04781        121 QNAPLVEVPLVDGADGFHAD----VPAIVAAALA--S-NAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDE  191 (364)
T ss_pred             cCCEEEEEecCCCccCCCcC----HHHHHHHHhc--c-CCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeC
Confidence            12333333321 11112223    3444332221  2 344555545567778776 4556666666664 479999999


Q ss_pred             cccCccccCCCcccccccCCCCCEE---Eeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      +|..|.... ..  ....+..+.++   +|||.+| .|+|+||+++++++++.+....  .+|+.+.+++.++.+.|+.-
T Consensus       192 ay~~f~~~~-~~--~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~l~~~  266 (364)
T PRK04781        192 AYGEFSDVP-SA--VGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQ--APYPVPTPCAALAEQALSAP  266 (364)
T ss_pred             cchhhcCCc-ch--HHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhcc
Confidence            999885322 11  12223345555   6999999 8999999999999999887532  46778888888877777421


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCe-eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          372 QKDKLQNNAHVVGSYLKERLTALKDKYGII-GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i-~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..+.+.+.++.. +.-++.+.+..++++.+ ...+..|+++++++.+           ..++.+.|.++||++++
T Consensus       267 ~~~~~~~~~~~~-~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~-----------~~~~~~~l~~~gI~v~~  329 (364)
T PRK04781        267 ALAVTARRVAEV-RAERERLHAALAQLPGVRRVYPSQGNFLLVRFDD-----------AEAAFQALLAAGVVVRD  329 (364)
T ss_pred             cHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC-----------HHHHHHHHHHCCeEEee
Confidence            001122222222 22233333333344322 2356779999998731           35678889999999975

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.73  E-value=3.8e-16  Score=159.57  Aligned_cols=311  Identities=14%  Similarity=0.091  Sum_probs=177.7

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccc-cchHHHHHHHHHHHhC---CCCCceEEEcCCHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLY-LNHAIADFAEALASKM---PGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~-~~~~~~elae~L~~~~---~~~~~~v~~~~sGseA~  171 (447)
                      +..++|+..|..  .++ ..|.+.+++.+.++....  ....| +.....+|.+.+++.+   ....++|++++++++++
T Consensus        32 ~~~~i~l~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al  108 (402)
T TIGR03542        32 SADIIRLGIGDT--TQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV  108 (402)
T ss_pred             CCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence            567889887765  334 468889999888776421  11224 3445667777777753   34567899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe-EeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      .....+   ..+++.|++.+++|.+....+...+... ....  ...+ ..++.|......|..|       +++   . 
T Consensus       109 ~~l~~l---~~~gd~Vlv~~P~y~~~~~~~~~~g~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~-------~~~---~-  171 (402)
T TIGR03542       109 FRLQSL---FGSDNTVAVQDPVYPAYVDSNVMAGRAG-VLDD--DGRYSKITYLPCTKENNFIPD-------LPE---E-  171 (402)
T ss_pred             HHHHHh---cCCCCEEEEeCCCCcchHHHHHHcCCcc-cccc--ccccceEEEeecchhhCCCCC-------ccc---c-
Confidence            875432   3456789999999998876554433211 0000  0001 2222221111112111       111   1 


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccC---CCCCEEEeeccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG---VVPDIVTMAKGI  326 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~g---v~pDivt~sK~l  326 (447)
                       + ++.++++...++++|.+. +.+.+++|.++|++||+++|+||+|..|...+...... ...+   ....+-+|||.+
T Consensus       172 -~-~~~~i~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~  248 (402)
T TIGR03542       172 -P-KIDIIYLCSPNNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA  248 (402)
T ss_pred             -C-CceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcccc
Confidence             1 334444434456677655 78889999999999999999999999885433111111 1111   111233699999


Q ss_pred             c-CCccccccccCHHHH--------HhhcCCcccccC-CCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHH
Q 013235          327 G-NGIPLGAVVTTPEIA--------EVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       327 g-~G~pigav~~~~~i~--------~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~  393 (447)
                      | .|+++|+++++++++        ..+.. ....++ +.+++++.++.+.|+.-..+   +..+..++..+.+.+.|++
T Consensus       249 g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  327 (402)
T TIGR03542       249 GFTGVRLGWTVVPKELTYADGHSVIQDWER-RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA  327 (402)
T ss_pred             CCCCcceEEEEecHHHhhcchhhHHHHHHH-HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            7 899999999998876        22211 111233 35677777766666411001   1122233333344444433


Q ss_pred             HHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          394 LKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                          ++ +.-..+ .|+++++++...        ....++++.|+ +.||++.+
T Consensus       328 ----~~-~~~~~~~~~~f~~v~l~~~--------~~~~~l~~~l~~~~gv~v~p  368 (402)
T TIGR03542       328 ----AG-FKVYGGEHAPYLWVKTPEG--------ISSWDFFDFLLYQYHVVGTP  368 (402)
T ss_pred             ----cC-ceecCCCceeEEEEECCCC--------CCHHHHHHHHHHhCCEEEeC
Confidence                33 222233 477999987321        01346788877 56999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.73  E-value=6.8e-16  Score=161.23  Aligned_cols=267  Identities=14%  Similarity=0.066  Sum_probs=153.3

Q ss_pred             CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCC
Q 013235          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (447)
Q Consensus       156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (447)
                      .+.++|++++++++|++.+++...  .+++.|++.+++|.+........            .|+..++.|......|+.|
T Consensus       117 v~pe~Ivit~Ga~~al~~l~~~l~--~pGD~Vlv~~P~Y~~~~~~~~~~------------~G~~vv~v~~~~~~~~~~~  182 (496)
T PLN02376        117 FDPERVVMSGGATGANETIMFCLA--DPGDVFLIPSPYYAAFDRDLRWR------------TGVEIIPVPCSSSDNFKLT  182 (496)
T ss_pred             CChhhEEEccchHHHHHHHHHHhC--CCCCEEEECCCCccchHHHHHhh------------CCCEEEEEeCCCCccCcCC
Confidence            456789999999999999988543  25688999999998765432211            1333444333222334445


Q ss_pred             hHHHHHHHHHHHHccCCCCeE-EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cc-
Q 013235          236 GEMYAKDVQDLIDFGTSGHVA-GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EA-  312 (447)
Q Consensus       236 ~~~~~~~le~~i~~~~~~~~a-avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~-  312 (447)
                      .+.+.+.+++..+.  ..++. .+|+.| ++++|.+. +.+.+++|.++|++|++++|+||+|..+.+.+..+-.. +. 
T Consensus       183 ~~~le~a~~~a~~~--~~~~k~l~l~nP-~NPTG~~~-s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~  258 (496)
T PLN02376        183 VDAADWAYKKAQES--NKKVKGLILTNP-SNPLGTML-DKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVV  258 (496)
T ss_pred             HHHHHHHHHHHHhc--CCCeeEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhh
Confidence            33322222222211  12455 444555 55667655 78899999999999999999999999875555222121 11 


Q ss_pred             --cC---CCCCE----EEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH-HHH
Q 013235          313 --HG---VVPDI----VTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ-NNA  380 (447)
Q Consensus       313 --~g---v~pDi----vt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~-~~~  380 (447)
                        ++   ..||.    -+|||.+| .|+++|++++ ++.+.+.+....  ..+..+.+++.++.+.|+   ++++. +++
T Consensus       259 ~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~--~~~~vs~~~Q~a~~~~L~---d~~~~~~~l  333 (496)
T PLN02376        259 NDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS--SFGLVSSQTQLMLASMLS---DDQFVDNFL  333 (496)
T ss_pred             ccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh--hcCCCCHHHHHHHHHHhC---ChhHHHHHH
Confidence              11   12442    26899998 8999999998 466666543221  112356677666666553   43442 233


Q ss_pred             HHHHHHHHHH---HHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          381 HVVGSYLKER---LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       381 ~~~g~~l~~~---L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                      +++.+.++++   +.+..+++++.......|+++++++...-.. ...-+...++++.++++ ||.+.++
T Consensus       334 ~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~-~~~~~~e~~l~~~ll~~~gV~v~pG  402 (496)
T PLN02376        334 MESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRD-RNSFESEIELWHIIIDKVKLNVSPG  402 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhcc-CCchhHHHHHHHHHHHcCCEEEeCc
Confidence            3333333322   2222333332211234569999998432100 01111235688888764 9998753

>PRK10534 L-threonine aldolase; Provisional

Probab=99.72  E-value=4.4e-16  Score=154.99  Aligned_cols=291  Identities=15%  Similarity=0.135  Sum_probs=171.7

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      .|||.++.++   | .+|.+.+|+.+.....    ..| +++...+|.++|+++++  .+.+++++||++++..++... 
T Consensus         1 ~~~~~~~~~~---~-p~~~~~~a~~~~~~~~----~~Y~~~~~~~~L~~~la~~~g--~~~~~v~~~g~~a~~~~l~~~-   69 (333)
T PRK10534          1 MIDLRSDTVT---R-PSRAMLEAMMAAPVGD----DVYGDDPTVNALQDYAAELSG--KEAALFLPTGTQANLVALLSH-   69 (333)
T ss_pred             CcccccccCC---C-CCHHHHHHHHhccCCC----cccCCCHHHHHHHHHHHHHhC--CCeEEEeCchHHHHHHHHHHh-
Confidence            3789888764   3 7899999987654332    345 68889999999999985  455678999999988888743 


Q ss_pred             hhcCCCeEEEEcCCcccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCCeE
Q 013235          180 LYTGCNDIISLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVA  256 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a  256 (447)
                      . .++++|++..++|..... ......           .+...++.+.  ...|..|    .++|++.+....  ..++.
T Consensus        70 ~-~~gd~vi~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~d----~~~l~~~i~~~~~~~~~~~  131 (333)
T PRK10534         70 C-ERGEEYIVGQAAHNYLYEAGGAAVL-----------GSIQPQPIDA--AADGTLP----LDKVAAKIKPDDIHFARTR  131 (333)
T ss_pred             c-CCCCeeEEechhhhhHhcCCchHHh-----------cCceEEeecC--CCCCCCC----HHHHHHhhcccCcCcccce
Confidence            2 244677766555421110 000000           0122222221  1123334    456666653210  01344


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcccc---CCCcccccccCCCCC--EEEeeccccCCcc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART---GSHFWGFEAHGVVPD--IVTMAKGIGNGIP  331 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~---G~~~~~~~~~gv~pD--ivt~sK~lg~G~p  331 (447)
                      +|+++. + ++|.+. +.+.+++|.++|++||+++|+||++. |+..   +...   ......+|  +++|||+++  ++
T Consensus       132 lv~l~n-p-~~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~---~~~~~~~~~~~~s~SK~~~--~~  202 (333)
T PRK10534        132 LLSLEN-T-HNGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL---KEITQYCDSFTICLSKGLG--TP  202 (333)
T ss_pred             EEEEec-C-CCCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH---HHHHhcCCEEEEEeEcCCC--Cc
Confidence            555552 2 246665 67778899999999999999999976 5322   2111   11111223  457999775  35


Q ss_pred             cc-ccccCHHHHHhhcCCcccc--cCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecc
Q 013235          332 LG-AVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (447)
Q Consensus       332 ig-av~~~~~i~~~l~~~~~~~--T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G  408 (447)
                      +| ++++++++++.+.......  .+..+.++++++.++|+..  .+..++..+..+++.+.|+++    ++ .-.+..+
T Consensus       203 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~----g~-~~~~~~~  275 (333)
T PRK10534        203 VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA----GA-DVMRQDT  275 (333)
T ss_pred             ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC----CC-ccCCCCc
Confidence            78 5778999998776432211  1223446677777777532  123333334455666666664    22 2234468


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|+.+.+...         ...++.+.|+++||++++
T Consensus       276 nfv~~~~~~~---------~~~~~~~~l~~~gi~v~~  303 (333)
T PRK10534        276 NMLFVRVGEE---------QAAALGEYMRERNVLINA  303 (333)
T ss_pred             eEEEEECCch---------hHHHHHHHHHHcCeeecC
Confidence            8888776310         135678889999999975

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.72  E-value=2e-15  Score=155.90  Aligned_cols=321  Identities=14%  Similarity=0.151  Sum_probs=179.8

Q ss_pred             EEecC--CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc----------ccc----ccccchHHHHHHHHHHHhC--
Q 013235           93 LFDEN--GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----------HST----VLYLNHAIADFAEALASKM--  154 (447)
Q Consensus        93 l~d~d--G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~----------~~~----~~~~~~~~~elae~L~~~~--  154 (447)
                      .||.+  -+-||++...-+..    ++..+.+-+.+..+...          +..    ..+......++++.+.+.+  
T Consensus        39 ~~~~~~np~g~i~l~~aeN~l----~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~  114 (447)
T PLN02607         39 PYDESHNPSGVIQMGLAENQV----SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGG  114 (447)
T ss_pred             CCCcccCCCceEEEechhhhh----hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCC
Confidence            35553  33588887655543    56677776666443110          000    0112223344444444432  


Q ss_pred             --CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          155 --PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       155 --~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                        +.+.++|++++++++|++.++....  ..++.|++..+.|.+........            .|+..++.+......|
T Consensus       115 ~~~v~p~~Ivit~G~t~al~~l~~~l~--~pGD~Vlv~~P~Y~~f~~~~~~~------------~g~~vv~v~~~~~~~f  180 (447)
T PLN02607        115 KARFDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWR------------TGVKIVPIHCDSSNNF  180 (447)
T ss_pred             CCCcCHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhc------------CCcEEEEEeCCCCCCC
Confidence              2355789999999999999876432  35688999999997765432111            1333444332222334


Q ss_pred             CCChHHHHHHHHHHHHcc--CCCCeE-EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          233 GADGEMYAKDVQDLIDFG--TSGHVA-GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~--~~~~~a-avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                      ..|    .+.+++.+...  ...++. .++..| +++.|.+ .+++.+++|.++|++|++.+|+||+|.++-..+..+-.
T Consensus       181 ~~~----~~~le~a~~~a~~~~~~vk~lll~nP-~NPtG~~-~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S  254 (447)
T PLN02607        181 QVT----PQALEAAYQEAEAANIRVRGVLITNP-SNPLGAT-VQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVS  254 (447)
T ss_pred             cCC----HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcCcc-cCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCccc
Confidence            345    44555554321  122454 555556 4556654 47899999999999999999999999874333312222


Q ss_pred             c-c---ccCC-C-CC-EE---Eeecccc-CCcccccccc-CHHHHHhhcCCcccccC-CCChHHHHHHHHHHHHHhhhhH
Q 013235          310 F-E---AHGV-V-PD-IV---TMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKL  376 (447)
Q Consensus       310 ~-~---~~gv-~-pD-iv---t~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l  376 (447)
                      . +   ..+. . ++ ++   +|||.+| +|+|+|++++ ++++.+.+...   ..| ..+.+++.++.+.|   +++++
T Consensus       255 ~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~---~~~~~~s~~~q~~~~~~L---~d~~~  328 (447)
T PLN02607        255 VAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM---SSFTLVSSQTQHLLASML---SDEEF  328 (447)
T ss_pred             HHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH---hhcCCCCHHHHHHHHHHh---CCchh
Confidence            1 1   1111 1 33 33   5899998 8999999998 67777665432   223 23556665555554   34444


Q ss_pred             H-HHHHHHHHHHHHH---HHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeecc
Q 013235          377 Q-NNAHVVGSYLKER---LTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFSQ  446 (447)
Q Consensus       377 ~-~~~~~~g~~l~~~---L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~~  446 (447)
                      . +.++.+.++++++   +.+..+++++ ..++ ..|+++++++.+.-  ..+..+...++++.+++ .||++.++
T Consensus       329 ~~~~l~~~r~~l~~~~~~~~~~L~~~gi-~~~~~~ag~fvw~~L~~~~--~~~~~~~e~~l~~~ll~~~gV~v~pG  401 (447)
T PLN02607        329 TENYIRTNRERLRKRYEMIVQGLRRAGI-ECLKGNAGLFCWMNLSPLL--ETPTREGELALWDSILREVKLNISPG  401 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccCCeeEEEEEEchHhh--cCCCchhHHHHHHHHHHhCCEEEcCc
Confidence            3 3344444444333   2223333443 2233 35899999984311  01111223467877775 69998753

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.72  E-value=5.8e-16  Score=158.33  Aligned_cols=312  Identities=13%  Similarity=0.095  Sum_probs=176.4

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--cccccc-cchHHHHHHHHHHHhCC------CCCceEE--EcCCH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLY-LNHAIADFAEALASKMP------GNLKVVF--FTNSG  167 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~-~~~~~~elae~L~~~~~------~~~~~v~--~~~sG  167 (447)
                      ...+|+..|.... .. .++.+.+++.+.+....  .....| +.....+|++.+++++.      ...++|.  .+++|
T Consensus        29 ~~~i~l~~g~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~  106 (404)
T PTZ00376         29 PSKVNLGIGAYRD-EN-GKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG  106 (404)
T ss_pred             cccEecccceeEC-CC-CCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence            3557877665311 11 22334445555442211  011123 23455667777776542      1345676  48899


Q ss_pred             HHHHHHHHHHHHhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          168 TEANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       168 seA~e~Aik~ar~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      ++|++.++.+.+.. ..++.|++.+++|++....+...             |...++.|......|+.|    .+.+++.
T Consensus       107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~l~~~~~~~~d----~~~l~~~  169 (404)
T PTZ00376        107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSA-------------GLNVKEYRYYDPKTKGLD----FDGMLED  169 (404)
T ss_pred             chHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-------------CCceeeccccCcccCCcC----HHHHHHH
Confidence            99999998765443 35688999999998877655433             222333332111124444    5666666


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccccc-CCCCCEE---
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEAH-GVVPDIV---  320 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~~~-gv~pDiv---  320 (447)
                      +.+..+ +..++++...++++|.+. +++.+++|.++|++||+++|.||+|.+|...+.  .......+ +..+.++   
T Consensus       170 ~~~~~~-~~~~~~~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~  247 (404)
T PTZ00376        170 LRTAPN-GSVVLLHACAHNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQ  247 (404)
T ss_pred             HHhCCC-CCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence            654322 234555454566677665 788999999999999999999999998865330  01011111 1112333   


Q ss_pred             Eeecccc-CCcccccc---ccCHHHHHhhcCC---cccccCCC-ChHHHHHHHHHHHHHh-hhhH-------HHHHHHHH
Q 013235          321 TMAKGIG-NGIPLGAV---VTTPEIAEVLTRR---NYFNTFGG-NPVCTAAGHAVLKVIQ-KDKL-------QNNAHVVG  384 (447)
Q Consensus       321 t~sK~lg-~G~pigav---~~~~~i~~~l~~~---~~~~T~~~-np~a~aaala~L~~i~-~~~l-------~~~~~~~g  384 (447)
                      +|||.++ .|+|+||+   ++++++++.+...   ...++++. +++++.++.+.|+.-+ .+++       .+++++..
T Consensus       248 SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r  327 (404)
T PTZ00376        248 SFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMR  327 (404)
T ss_pred             eCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999 89999998   5788765544221   12234443 5677777777774210 0112       22334444


Q ss_pred             HHHHHHHHHHHHhcC-CeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          385 SYLKERLTALKDKYG-IIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       385 ~~l~~~L~~l~~~~~-~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                      +.+.+.|+++  ..+ .+..+ +..|+++++++.             .+++++|+++ ||++.++
T Consensus       328 ~~l~~~L~~~--~~~~~~~~~~p~gg~f~~~~~~-------------~~~~~~L~~~~~v~v~p~  377 (404)
T PTZ00376        328 QLLYDELKAL--GSPGDWEHIINQIGMFSFTGLT-------------KEQVERLIEKYHIYLLDN  377 (404)
T ss_pred             HHHHHHHHhc--CCCCcccccccCceEEEecCCC-------------HHHHHHHHHhCCEeecCC
Confidence            4444444443  111 11112 334677777651             3577788877 9987653

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.72  E-value=2.2e-15  Score=153.25  Aligned_cols=300  Identities=14%  Similarity=0.080  Sum_probs=176.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhcccc------cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCC
Q 013235          112 CCGHCHPYVVDSIVNQIKRIQHS------TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (447)
Q Consensus       112 ~lGh~~p~v~~A~~~~l~~~~~~------~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~  185 (447)
                      -+|..++.+.+|+.+........      ......+...++.+.++++++.  +.++|++||++|+..+++...  .+++
T Consensus        28 ~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--~~~~~~~g~t~a~~~al~~l~--~~gd  103 (387)
T PRK09331         28 RGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--DEARVTHGAREGKFAVMHSLC--KKGD  103 (387)
T ss_pred             cCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhc--CCCC
Confidence            46778899999998877543221      1122355788999999999854  568899999999999997653  3556


Q ss_pred             eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc---CCCCeEEEEEcc
Q 013235          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVAGFLSES  262 (447)
Q Consensus       186 ~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~---~~~~~aavi~Ep  262 (447)
                      +|++...++.+.. .++...            |+..+..|......+..|    .+++++.+...   ...++.+|+++.
T Consensus       104 ~Vlv~~~~h~s~~-~~~~~~------------G~~~~~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lV~l~~  166 (387)
T PRK09331        104 YVVLDGLAHYTSY-VAAERA------------GLNVREVPKTGYPEYKIT----PEAYAEKIEEVKEETGKPPALALLTH  166 (387)
T ss_pred             EEEECCCchHHHH-HHHHHc------------CCEEEEEeCccCcCCCcC----HHHHHHHHHHhhhccCCCCEEEEEEC
Confidence            7777665544332 222221            222222221000112234    45666666532   113577888888


Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCCccccccccCHH
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPE  340 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pigav~~~~~  340 (447)
                      +.++.|.+.+    +++|.++|+++|+++|+||+|+ +|..+   +....+|+  |++  +++|.++++.++|+++++++
T Consensus       167 ~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~---~~~~~~g~--D~~~~s~~K~l~~~~~~G~l~~~~~  236 (387)
T PRK09331        167 VDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP---VDGKKLGA--DFIVGSGHKSMAASAPSGVLATTEE  236 (387)
T ss_pred             CCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC---CCHHHcCC--CEEEeeCcccccCCCCEEEEEECHH
Confidence            8888888876    9999999999999999999996 44222   11223344  665  57799998778999999999


Q ss_pred             HHHhhcCCc--cc----ccCC--CChHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          341 IAEVLTRRN--YF----NTFG--GNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       341 i~~~l~~~~--~~----~T~~--~np~a~aaala~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      +++.+....  +.    ..++  -.+...++++++|+.+.+. +..++..+..+++++.|.++. .+.++.+-.....++
T Consensus       237 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~-g~~~~~~~~~~~~i~  315 (387)
T PRK09331        237 YADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIE-GFKQLGEKPRNHDLM  315 (387)
T ss_pred             HHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeccCcCcCCeE
Confidence            888764421  10    0122  2233455556667655432 233445566677777776651 111111101223344


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      .++...-............++.+.|+++||..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~  347 (387)
T PRK09331        316 KFETPSFDEIAKKHKRRGFFLYEELKKRGIHG  347 (387)
T ss_pred             EEeCCchhHHhhhccccchhHHHHHHHcCceE
Confidence            44321000000000112356889999999983

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.72  E-value=2.2e-15  Score=153.51  Aligned_cols=303  Identities=14%  Similarity=0.110  Sum_probs=178.3

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhC------CCCCceEEEcCCHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM------PGNLKVVFFTNSGTEA  170 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~------~~~~~~v~~~~sGseA  170 (447)
                      +...+||..|...  +. .++.+.+++.+.++........| ......++.+.+++++      +.+.++|+++++++++
T Consensus        32 ~~~~~~l~~g~p~--~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~a  108 (394)
T PRK06836         32 ADNVFDFSLGNPS--VP-PPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGA  108 (394)
T ss_pred             CCCeEEecCcCCC--CC-CCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHH
Confidence            3457899877542  22 56788888877665321111223 2334445555555543      2345789999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..+++...  ..++.|++.+++|.+........             |+.....|.... .++.|    .+++++.+.. 
T Consensus       109 l~~~~~~l~--~~gd~Vli~~p~~~~~~~~~~~~-------------g~~v~~v~~~~~-~~~~d----~~~l~~~~~~-  167 (394)
T PRK06836        109 LNVALKAIL--NPGDEVIVFAPYFVEYRFYVDNH-------------GGKLVVVPTDTD-TFQPD----LDALEAAITP-  167 (394)
T ss_pred             HHHHHHHhc--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEEecCCc-cCcCC----HHHHHhhcCc-
Confidence            999887542  35678999999887754433211             222222222111 12334    5667766642 


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH------hCCEEEEeccccCccccCCCcccccccCCCCCEE---E
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---T  321 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t  321 (447)
                         ++.++++...++++|.+. +.+.+++|.++|++      ||+++|+||+|..|-..|......  ....++++   +
T Consensus       168 ---~~~~v~~~~p~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S  241 (394)
T PRK06836        168 ---KTKAVIINSPNNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYI--FKYYDNSIVVYS  241 (394)
T ss_pred             ---CceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCCh--HHccCcEEEEec
Confidence               455666655577777765 67888999999999      899999999999885444211111  11122333   4


Q ss_pred             eecccc-CCccccccccCHHHHHh---hcCCc----ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 013235          322 MAKGIG-NGIPLGAVVTTPEIAEV---LTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       322 ~sK~lg-~G~pigav~~~~~i~~~---l~~~~----~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~  393 (447)
                      |||.++ .|+++|++++++++.+.   .....    ....++.+++.+.++...++   +....+..++..+.+.+.|++
T Consensus       242 ~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~l~~~L~~  318 (394)
T PRK06836        242 FSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDLLYDGLTE  318 (394)
T ss_pred             chhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHh
Confidence            899999 79999999999876432   11110    11223456666666655553   222233444455555555544


Q ss_pred             HHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       394 l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                          ++.....+..|+++++.+...         ...++++.|.++||.+.+.
T Consensus       319 ----~g~~~~~~~gg~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~g  358 (394)
T PRK06836        319 ----LGFECVKPQGAFYLFPKSPEE---------DDVAFCEKAKKHNLLLVPG  358 (394)
T ss_pred             ----CCCEeecCCceEEEEEeCCCC---------CHHHHHHHHHhCCEEEECc
Confidence                332212233477887765221         1356778889999998753

>PLN02368 alanine transaminase

Probab=99.71  E-value=1.1e-15  Score=155.89  Aligned_cols=206  Identities=13%  Similarity=0.075  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHhC----C--CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          143 IADFAEALASKM----P--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       143 ~~elae~L~~~~----~--~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      ..+|.+.|++++    +  ...++|++++++++++..+++.... ..++.|++.+++|......+...            
T Consensus       109 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~pGd~Vli~~P~Y~~y~~~~~~~------------  175 (407)
T PLN02368        109 LPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR-GEKDGVLVPVPQYPLYSATISLL------------  175 (407)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC-CCCCEEEEeCCCCccHHHHHHHc------------
Confidence            345555555443    2  3457899999999999998875431 25688999999998776554332            


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-C-CCe-EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-S-GHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~-~~~-aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                       |...++.|......|+.|    .+++++.+.... . .++ +.+++.| ++++|.+. +.+.+++|.++|++||+++|.
T Consensus       176 -g~~~v~v~~~~~~~~~~d----~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG~v~-s~e~l~~l~~~a~~~~~~II~  248 (407)
T PLN02368        176 -GGTLVPYYLEESENWGLD----VNNLRQSVAQARSKGITVRAMVIINP-GNPTGQCL-SEANLREILKFCYQERLVLLG  248 (407)
T ss_pred             -CCEEEEEecccccCCCCC----HHHHHHHHHHHhhcCCCeEEEEEECC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEE
Confidence             223333332222234445    566776665311 1 134 4667778 55677665 789999999999999999999


Q ss_pred             eccccCccccCC-Ccccc-ccc-CC------CCCEE---Eeeccc-c-CCccccccc---cCHHHHHhhcCCcccccCCC
Q 013235          294 DEVQAGFARTGS-HFWGF-EAH-GV------VPDIV---TMAKGI-G-NGIPLGAVV---TTPEIAEVLTRRNYFNTFGG  356 (447)
Q Consensus       294 DEv~tGfgr~G~-~~~~~-~~~-gv------~pDiv---t~sK~l-g-~G~pigav~---~~~~i~~~l~~~~~~~T~~~  356 (447)
                      ||+|..|...|. .+... +.. ++      .+.++   +|||.+ + .|+|+||++   +++++++.+... ...+++.
T Consensus       249 DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~-~~~~~~~  327 (407)
T PLN02368        249 DEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKV-ASIALSP  327 (407)
T ss_pred             EccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHH-hcccCCC
Confidence            999998865442 12121 110 11      12344   479999 4 799999998   488888877654 2346778


Q ss_pred             ChHHHHHHHHHHH
Q 013235          357 NPVCTAAGHAVLK  369 (447)
Q Consensus       357 np~a~aaala~L~  369 (447)
                      |.+++.++.++|+
T Consensus       328 ~~~~Q~aa~~~l~  340 (407)
T PLN02368        328 NVSGQIFMGLMVN  340 (407)
T ss_pred             CcHHHHHHHHHhC
Confidence            8899999988885

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.71  E-value=1.5e-15  Score=151.26  Aligned_cols=296  Identities=20%  Similarity=0.134  Sum_probs=174.4

Q ss_pred             EecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc
Q 013235          103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT  182 (447)
Q Consensus       103 D~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t  182 (447)
                      ||.|..   ++| .+|.+.+++.+.+...   ...++.+...++++.+++.+.  .+.++++++|++|+..+++...  .
T Consensus         1 ~~~~~~---~~~-~~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~--~   69 (338)
T cd06502           1 DFRSDT---VTG-PTPEMLEAMAAANVGD---DVYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT--Q   69 (338)
T ss_pred             Cccccc---CCC-CCHHHHHHHHhcccCC---cccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc--C
Confidence            555533   567 8899999998765322   122356778899999999986  4567889999999999998653  3


Q ss_pred             CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCCeEEEE
Q 013235          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGHVAGFL  259 (447)
Q Consensus       183 ~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~~aavi  259 (447)
                      +++.|++..++| ..........         ...|+.....|..   .+..|    .+++++.+....   ..++++++
T Consensus        70 ~gd~v~~~~~~~-~~~~~~~~~~---------~~~g~~~~~v~~~---~~~~d----~~~l~~~i~~~~~~~~~~~~~v~  132 (338)
T cd06502          70 PGGSVICHETAH-IYTDEAGAPE---------FLSGVKLLPVPGE---NGKLT----PEDLEAAIRPRDDIHFPPPSLVS  132 (338)
T ss_pred             CCCeEEEecCcc-eeeecCCcHH---------HHcCceEEeecCC---CCcCC----HHHHHHHhhccCCCcCCcceEEE
Confidence            456677655544 3221110000         0012222222221   12234    566777765321   12456666


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc--ccCCCcccccccCCCCCEE--EeeccccCCccccc-
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGA-  334 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg--r~G~~~~~~~~~gv~pDiv--t~sK~lg~G~piga-  334 (447)
                      ++..++.||..  +.+.+++|.++|+++|+++|+||+|..+.  ..| .  ........+|++  +++|.++  .|.|+ 
T Consensus       133 l~~p~n~g~~~--~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~-~--~~~~~~~~~d~~~~s~sK~~~--~~~g~~  205 (338)
T cd06502         133 LENTTEGGTVY--PLDELKAISALAKENGLPLHLDGARLANAAAALG-V--ALKTYKSGVDSVSFCLSKGGG--APVGAV  205 (338)
T ss_pred             EEeecCCcccc--CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcC-C--CHHHHHhcCCEEEEeccccCC--CccceE
Confidence            66555555543  67789999999999999999999874221  122 1  112222346766  5778886  23355 


Q ss_pred             cccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEE
Q 013235          335 VVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (447)
Q Consensus       335 v~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g  412 (447)
                      +++++++++.+....  +.++++.+++.+++++++|+.-...+..++..++.+++.+.|+++    +. ......+.++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~~~  280 (338)
T cd06502         206 VVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL----GG-LESEVQTNIVL  280 (338)
T ss_pred             EECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----CC-CcccccCCeEE
Confidence            457888888775422  234566677888888888763112234566777778888877765    21 11223455555


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHH---hCCceeec
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMK---GICALFFS  445 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~---~~Gvlv~~  445 (447)
                      +.+...       .....++.+++.   ++|+++..
T Consensus       281 v~~~~~-------~~~~~~l~~~l~~~~~~gi~~~~  309 (338)
T cd06502         281 LDPVEA-------NAVFVELSKEAIERRGEGVLFYA  309 (338)
T ss_pred             EecCCc-------cHHHHHHHHHHHHhhhCCEEEEe
Confidence            554211       122344555554   78988853

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.71  E-value=1.7e-15  Score=154.52  Aligned_cols=311  Identities=14%  Similarity=0.095  Sum_probs=172.7

Q ss_pred             eEEEecCCcccccCCCCC--HHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC------CCCceE--EEcCCHH
Q 013235          100 RYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP------GNLKVV--FFTNSGT  168 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~------~~~~~v--~~~~sGs  168 (447)
                      ..|||..|....+-++.+  +.+.+++.+.++...  ...|. .....+|.+.+++++.      ...+++  +++++++
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~--~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~  104 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET--TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGT  104 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhccccc--CCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCcc
Confidence            457888776422222223  577777776554321  11122 3344566666666541      134555  8999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|+..++++......++.|++.+++|.+....+...             |...++.|......|+.|    .+++++.+.
T Consensus       105 ~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~-------------g~~~v~v~~~~~~~~~~d----~~~l~~~~~  167 (396)
T PRK09257        105 GALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAA-------------GLEVKTYPYYDAATKGLD----FDAMLADLS  167 (396)
T ss_pred             HHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHc-------------CCcEEEEeccccccCccC----HHHHHHHHH
Confidence            999999875543346689999999998876555433             222233322101123344    566777665


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcccc-CCCcccccc-cCCCCCEE---Eee
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-GSHFWGFEA-HGVVPDIV---TMA  323 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~-G~~~~~~~~-~gv~pDiv---t~s  323 (447)
                      ...+ +..++++-..++++|.+. +.+.+++|.++|++||+++|.||+|.+|... +........ .+..+.++   +||
T Consensus       168 ~~~~-~~~~~i~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfS  245 (396)
T PRK09257        168 QAPA-GDVVLLHGCCHNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFS  245 (396)
T ss_pred             hCCC-CCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcC
Confidence            4322 234555455677777765 8899999999999999999999999988643 111111111 11123343   699


Q ss_pred             cccc-CCcccccccc---CHHH----HHhhcCCcccccCC-CChHHHHHHHHHHHHHh-h---hh----HHHHHHHHHHH
Q 013235          324 KGIG-NGIPLGAVVT---TPEI----AEVLTRRNYFNTFG-GNPVCTAAGHAVLKVIQ-K---DK----LQNNAHVVGSY  386 (447)
Q Consensus       324 K~lg-~G~pigav~~---~~~i----~~~l~~~~~~~T~~-~np~a~aaala~L~~i~-~---~~----l~~~~~~~g~~  386 (447)
                      |.++ .|+++||+++   +++.    +..+... ...++. .+++++.++.+.|+.-. .   ++    +.+..+++.+.
T Consensus       246 K~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~  324 (396)
T PRK09257        246 KNFGLYGERVGALSVVAEDAEEADRVLSQLKAT-IRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQL  324 (396)
T ss_pred             CcCccccccceeEEEEeCCHHHHHHHHHHHHHH-hhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 4999999873   4443    2323221 112333 46676666666553210 0   11    22333333333


Q ss_pred             HHHHHHHHHHhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          387 LKERLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       387 l~~~L~~l~~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+.|++.... ..+. ..+..|+++++++.            ...+.+.+.+.||++.+
T Consensus       325 l~~~L~~~~~~-~~~~~~~p~gg~~~w~~l~------------~~~~~~l~~~~~V~~~p  371 (396)
T PRK09257        325 LVEALKAKGPS-RDFDFIARQRGMFSYSGLT------------PEQVDRLREEFGVYAVG  371 (396)
T ss_pred             HHHHHHhcCCC-CCcccccccceEEEecCCC------------HHHHHHHHHcCCEEEcC
Confidence            33333332100 0111 23445888888762            12233344677998754

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.70  E-value=1.2e-15  Score=153.39  Aligned_cols=285  Identities=14%  Similarity=0.117  Sum_probs=170.2

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      +...+|+..|..  ++| .++.+      .+..    ...|+.+...+|.+.+++.++.+.++|+++++++|++..+++.
T Consensus        30 ~~~~~~l~~ne~--~~~-~~~~~------~~~~----~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~   96 (354)
T PRK04635         30 GRGDIWINANES--PFN-NEYKL------DLAR----LNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRA   96 (354)
T ss_pred             CCCcEEeeCCCC--CCC-CChhh------hhHH----hccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHH
Confidence            345688887765  445 23332      1111    2346666678899999999887788999999999999999975


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      ... .|.+.|++.+++|......+...             |...+..|..  ..|..|    .+.++. +    + ++.+
T Consensus        97 ~~~-~g~d~vlv~~P~y~~y~~~~~~~-------------g~~v~~v~~~--~~~~~~----~~~l~~-~----~-~~~l  150 (354)
T PRK04635         97 FCE-PGQDSIACFGPTYGMYAISAETF-------------NVGVKALPLT--ADYQLP----LDYIEQ-L----D-GAKL  150 (354)
T ss_pred             hcC-CCCCeEEEcCCChHHHHHHHHHc-------------CCEEEEEecC--CCCCCC----HHHHHh-c----c-CCCE
Confidence            432 23377999999996544332211             2333332221  123333    333432 2    1 3344


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLG  333 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig  333 (447)
                      +++...++++|.+.+ .+.+++|.+.|+  ++++|+||+|..|.... ...  +.....+.++   +|||.+| .|+|+|
T Consensus       151 i~i~nP~NPTG~~~~-~~~l~~l~~~~~--~~~vivDeay~~~~~~~-s~~--~~~~~~~~~iv~~S~SK~~~l~GlRlG  224 (354)
T PRK04635        151 VFICNPNNPTGTVID-RADIEQLIEMTP--DAIVVVDEAYIEFCPEY-SVA--DLLASYPNLVVLRTLSKAFALAGARCG  224 (354)
T ss_pred             EEEeCCCCCCCccCC-HHHHHHHHHhCC--CcEEEEeCchHhhccCc-chH--HHHhhCCCEEEEechHHHhhhhHHHHh
Confidence            444445666777664 444555555443  59999999998875221 111  1112234444   6999998 899999


Q ss_pred             ccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (447)
Q Consensus       334 av~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~  410 (447)
                      ++++++++++.+...  ...|+.+.....++.+.|+....+.+.   +++++..+++.+.|+    +++.+.-.+..|.|
T Consensus       225 ~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~~~g~f  298 (354)
T PRK04635        225 FTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALS----MYGGAKVLEGNGNY  298 (354)
T ss_pred             hhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH----hCCCceECCCCCcE
Confidence            999999999887642  234666777777777777421111122   223333344444444    33423334566888


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.+++.        +   ..++.+.|.++||+++
T Consensus       299 ~~~~~~--------~---~~~~~~~l~~~gv~v~  321 (354)
T PRK04635        299 VLAKFD--------D---VDAVFKALWDAGIVAR  321 (354)
T ss_pred             EEEECC--------C---HHHHHHHHHHCCEEEE
Confidence            888763        1   2467788899999986

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.69  E-value=2.5e-14  Score=144.56  Aligned_cols=294  Identities=15%  Similarity=0.123  Sum_probs=178.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhcccccccc-------cchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhh-c
Q 013235          112 CCGHCHPYVVDSIVNQIKRIQHSTVLY-------LNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLY-T  182 (447)
Q Consensus       112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~-------~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~-t  182 (447)
                      ..|-..+.+.+++.+.+.........+       ......++.+.|++++... .+++++++|+++++..+++..... .
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~   86 (373)
T cd06453           7 ATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANK   86 (373)
T ss_pred             cccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCC
Confidence            345567899999988875542211111       1234567888999988655 568999999999999999765431 1


Q ss_pred             CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc
Q 013235          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (447)
Q Consensus       183 ~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep  262 (447)
                      ++++|++.+.+|.+............       ...+..++...    .+..|    .+++++.+..    ++.+|++.-
T Consensus        87 ~g~~vl~~~~~~~~~~~~~~~~~~~~-------g~~~~~v~~~~----~~~~d----~~~l~~~l~~----~~~~v~~~~  147 (373)
T cd06453          87 PGDEIVTSVMEHHSNIVPWQQLAERT-------GAKLKVVPVDD----DGQLD----LEALEKLLTE----RTKLVAVTH  147 (373)
T ss_pred             CCCEEEECcchhHHHHHHHHHHHhhc-------CcEEEEeecCC----CCCcC----HHHHHHHhcC----CceEEEEeC
Confidence            45678877776654321111110000       01223333211    11123    5677776642    567777777


Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHH
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPE  340 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~  340 (447)
                      +.+++|.+.+    +++|.++|++||+++|+|++++ +|...     +......+|+++++  |.+++ ..+|+++++++
T Consensus       148 ~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~-----~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~  216 (373)
T cd06453         148 VSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP-----VDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEE  216 (373)
T ss_pred             cccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee-----eeccccCCCEEEeccccccCC-CCcEEEEEchH
Confidence            7777888876    8999999999999999999986 33221     12223457999988  99986 56899999999


Q ss_pred             HHHhhcCCccc-----------c-------cC---CCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHH
Q 013235          341 IAEVLTRRNYF-----------N-------TF---GGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       341 i~~~l~~~~~~-----------~-------T~---~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      +++.+......           .       .|   ..|..+..+..++|+.+++++   +.++.+++.+++++.|+++. 
T Consensus       217 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~-  295 (373)
T cd06453         217 LLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIP-  295 (373)
T ss_pred             HhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC-
Confidence            88776542100           0       11   123334444455677776544   44555566666666655531 


Q ss_pred             hcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       397 ~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+..+......+.++.+.+...         ...++.+.|.++||.+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~l~~~gi~i~~  335 (373)
T cd06453         296 GVRVYGDAEDRAGVVSFNLEGI---------HPHDVATILDQYGIAVRA  335 (373)
T ss_pred             CeEEeCCccccCCeEEEEECCc---------CHHHHHHHHHHCCEEecc
Confidence            1112222233466777766211         135788899999998864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.69  E-value=8.1e-15  Score=152.40  Aligned_cols=278  Identities=16%  Similarity=0.115  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHhCC--------CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          142 AIADFAEALASKMP--------GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       142 ~~~elae~L~~~~~--------~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      ...+|.+.|++++.        .+.++|+++++++++++.++....  ..++.|++.+++|.+........         
T Consensus        87 G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~--~pGd~Vlv~~P~Y~~~~~~~~~~---------  155 (468)
T PLN02450         87 GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA--EPGDAFLLPTPYYPGFDRDLKWR---------  155 (468)
T ss_pred             ChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC--CCCCEEEECCCCCCchHHHHhhc---------
Confidence            33455555555442        356789999999999998887543  25688999999997764433211         


Q ss_pred             ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeE-EEEEccccCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVA-GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a-avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~l  290 (447)
                         .|+..++.|......|..|    .+++++.+...  ...++. .+|+.|. +++|.+ .+++.+++|.++|++||++
T Consensus       156 ---~g~~~v~v~~~~~~~~~~~----~~~le~~~~~~~~~~~~~k~v~l~nP~-NPTG~~-~s~e~l~~ll~~a~~~~~~  226 (468)
T PLN02450        156 ---TGVEIVPIHCSSSNGFQIT----ESALEEAYQQAQKLNLKVKGVLITNPS-NPLGTT-TTRTELNLLVDFITAKNIH  226 (468)
T ss_pred             ---CCcEEEEEecCCccCCcCC----HHHHHHHHHHHHhcCCCeeEEEEecCC-CCCCcc-cCHHHHHHHHHHHHHCCcE
Confidence               1333344332212233334    34555554321  112444 5555564 566655 4788999999999999999


Q ss_pred             EEEeccccCccccCCCcccc-ccc------C--CCCCEE---Eeecccc-CCccccccccCHH-HHHhhcCCcccccCCC
Q 013235          291 CIADEVQAGFARTGSHFWGF-EAH------G--VVPDIV---TMAKGIG-NGIPLGAVVTTPE-IAEVLTRRNYFNTFGG  356 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~~~~-~~~------g--v~pDiv---t~sK~lg-~G~pigav~~~~~-i~~~l~~~~~~~T~~~  356 (447)
                      +|.||+|.++-..+..+-.. +..      +  ....++   +|||.++ +|+++|+++++++ +.+.+.....  ....
T Consensus       227 iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~--~~~~  304 (468)
T PLN02450        227 LISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS--FGLV  304 (468)
T ss_pred             EEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhh--cCCC
Confidence            99999999865544222111 111      1  112233   6999998 8999999999754 5555543211  1234


Q ss_pred             ChHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHH---HHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHH
Q 013235          357 NPVCTAAGHAVLKVIQKDKLQN-NAHVVGSYLK---ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYI  432 (447)
Q Consensus       357 np~a~aaala~L~~i~~~~l~~-~~~~~g~~l~---~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~  432 (447)
                      +.+++.++.+.|+   ++.+.+ .++++.+.++   +.+.+..+++++.......|+++++.+.+.-.  ...-....++
T Consensus       305 s~~~Q~a~~~~L~---~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~--~~~~~~~~~l  379 (468)
T PLN02450        305 SSQTQYLLSALLS---DKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLK--SNTFEAEMEL  379 (468)
T ss_pred             CHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcC--cCCchHHHHH
Confidence            6777777766664   332221 1222222222   22333333343321223457899998842110  0111123457


Q ss_pred             HHHHH-hCCceeecc
Q 013235          433 MDKMK-GICALFFSQ  446 (447)
Q Consensus       433 ~~~l~-~~Gvlv~~~  446 (447)
                      ++.|+ +.||.+.++
T Consensus       380 ~~~ll~~~gV~v~PG  394 (468)
T PLN02450        380 WKKIVYEVKLNISPG  394 (468)
T ss_pred             HHHHHHhCCEEEeCc
Confidence            77776 479998753

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.69  E-value=3.1e-15  Score=153.58  Aligned_cols=311  Identities=15%  Similarity=0.057  Sum_probs=172.9

Q ss_pred             eEEEecCCcccccCCCCC--HHHHHHHHHHHHhccc--ccccccch-HHHHHHHHHHHhC------CCCCceEEEcCCHH
Q 013235          100 RYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQH--STVLYLNH-AIADFAEALASKM------PGNLKVVFFTNSGT  168 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~~l~~~~~--~~~~~~~~-~~~elae~L~~~~------~~~~~~v~~~~sGs  168 (447)
                      ..|||..|...  + ...  +.+.+++.+.++....  ....|..+ ...+|.+.|++++      +.+.++|+++++++
T Consensus        31 ~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~  107 (416)
T PRK09440         31 GAIMLGGGNPA--H-IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ  107 (416)
T ss_pred             CceeccCCCCC--c-cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence            45888766542  1 121  2455666555443110  01124322 2345555555543      34567899999999


Q ss_pred             HHHHHHHHHHHhh---cCCCeEEE-EcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHH
Q 013235          169 EANELAIMMARLY---TGCNDIIS-LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (447)
Q Consensus       169 eA~e~Aik~ar~~---t~~~~ii~-~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (447)
                      +|+..++++....   ..++.|++ .+++|.+....+........       .+...++.+.. ...|+.|    .++++
T Consensus       108 ~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~d----~~~l~  175 (416)
T PRK09440        108 SAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVS-------YRPNIELLPEG-QFKYHVD----FEHLH  175 (416)
T ss_pred             HHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceee-------ccccccccccc-ccccCCC----HHHcc
Confidence            9999998755321   12467888 69999987654332110000       01111111110 0012333    34444


Q ss_pred             HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---E
Q 013235          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---T  321 (447)
Q Consensus       245 ~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t  321 (447)
                        +.   .+..+.++..| ++++|.+. +.+.+++|.++|++|++++|+||+|..+-..- .+..... ...+.++   +
T Consensus       176 --~~---~~~~~i~l~~P-~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~-~~~~~vI~~~S  246 (416)
T PRK09440        176 --ID---EDTGAICVSRP-TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATP-LWNPNIILCMS  246 (416)
T ss_pred             --cC---CCceEEEEecC-CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCc-cccCCeEEEec
Confidence              11   22334445555 56777775 78889999999999999999999996331110 0101100 1123333   6


Q ss_pred             eeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHH--------HHHHHHHHHHHHH
Q 013235          322 MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA--------HVVGSYLKERLTA  393 (447)
Q Consensus       322 ~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~--------~~~g~~l~~~L~~  393 (447)
                      |||....|+++||+++++++++.+........++.+.+++.++.+.|+   +.++.++.        +++.+.+++.|.+
T Consensus       247 fSK~~~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~r~~~~~~~L~~  323 (416)
T PRK09440        247 LSKLGLPGVRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIE---SGDLLRLSETVIRPFYRQKVQLAIALLRR  323 (416)
T ss_pred             ccccCCCcceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999755799999999999999887653333445667888888877774   33333332        2233333333333


Q ss_pred             HHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          394 LKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .....+ +.-++. .|+++++++....       ....++.+.|.++||++.+
T Consensus       324 ~l~~~~-~~~~~p~gg~fiw~~~~~~~-------~~~~~~~~~l~~~gV~v~p  368 (416)
T PRK09440        324 YLPDEP-CLIHKPEGAIFLWLWFKDLP-------ITTEELYQRLKARGVLVVP  368 (416)
T ss_pred             hcccCC-eEEecCCCceEEEEECCCCC-------CCHHHHHHHHHHCCEEEec
Confidence            222111 222233 4899999884311       0135677888999999875

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.69  E-value=2.2e-14  Score=146.32  Aligned_cols=299  Identities=15%  Similarity=0.103  Sum_probs=179.3

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc---cccc----ccchHHHHHHHHHHHhCCCC-CceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH---STVL----YLNHAIADFAEALASKMPGN-LKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~---~~~~----~~~~~~~elae~L~~~~~~~-~~~v~~~~sGse  169 (447)
                      +..|||..+      .|-.++.|.+++.+.+.....   ....    .......++++.|++++... .++|+|++|+++
T Consensus        16 ~~iyld~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~   89 (398)
T TIGR03392        16 GTVYLDSAA------TALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE   89 (398)
T ss_pred             CeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence            467888653      344578899999887754211   1110    11234567889999998763 578999999999


Q ss_pred             HHHHHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          170 ANELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++..++....  ...++++|++.++.|++.........         ...|+..+..|...  .+..|    .+++++.+
T Consensus        90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~---------~~~g~~v~~v~~~~--~~~~~----~~~l~~~i  154 (398)
T TIGR03392        90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVA---------QQTGAKVVKLPIGA--DLLPD----IRQLPELL  154 (398)
T ss_pred             HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHH---------HHcCcEEEEEecCC--CCCcC----HHHHHHHh
Confidence            9999987542  12356789998988886432111110         01133322222211  11123    56677766


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cc
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~  325 (447)
                      ..    ++.+|++.-+++.+|.+.+    +++|.++|+++|+++|+|++|. +|..  .   .+.....+|+.++|  |.
T Consensus       155 ~~----~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~---~~~~~~~~d~~~~s~~K~  220 (398)
T TIGR03392       155 TP----RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--P---PDVQALDIDFYAFSGHKL  220 (398)
T ss_pred             cc----CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC--C---CChhhcCCCEEEEecccc
Confidence            42    4566777777888888876    8999999999999999999995 3321  1   12222347999988  97


Q ss_pred             ccCCccccccccCHHHHHhhcCCccc------------------ccC---CCChHHHHHHHHHHHHHhhhh---HHHHHH
Q 013235          326 IGNGIPLGAVVTTPEIAEVLTRRNYF------------------NTF---GGNPVCTAAGHAVLKVIQKDK---LQNNAH  381 (447)
Q Consensus       326 lg~G~pigav~~~~~i~~~l~~~~~~------------------~T~---~~np~a~aaala~L~~i~~~~---l~~~~~  381 (447)
                      +|. ..+|+++.++++++.+......                  .-|   .-|..+.++..++|+.+++.+   ..++.+
T Consensus       221 ~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~  299 (398)
T TIGR03392       221 YGP-TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSV  299 (398)
T ss_pred             cCC-CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            653 2379999999988766431100                  001   123446666667777775543   344455


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          382 VVGSYLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+++++.|.++    +.+.-.. ....++.+.+..      .   ....+.+.|.++||.++.
T Consensus       300 ~l~~~l~~~l~~l----~g~~~~~~~~~~i~~~~~~~------~---~~~~l~~~L~~~gI~v~~  351 (398)
T TIGR03392       300 SLADLAEERLAQL----PGFRSFRCPGSSLLAFDFAG------V---HHSDLAALLAESGIALRA  351 (398)
T ss_pred             HHHHHHHHHHhcC----CCeEEeCCCCCcEEEEEeCC------c---CHHHHHHHHHhCCEEEec
Confidence            5555555555443    2221111 123355555421      0   134677888899999864

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.69  E-value=3.8e-15  Score=150.06  Aligned_cols=298  Identities=13%  Similarity=0.087  Sum_probs=167.5

Q ss_pred             CCCCHHHHHHHHHHHHhcccccc------cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235          114 GHCHPYVVDSIVNQIKRIQHSTV------LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI  187 (447)
Q Consensus       114 Gh~~p~v~~A~~~~l~~~~~~~~------~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~i  187 (447)
                      |+..|.+.+++.+.......++.      ...++...++.+++++.++.  +.+++++|+++++..++....  .+++.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~--~~gd~V   86 (361)
T cd06452          11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC--EKGDWV   86 (361)
T ss_pred             CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc--CCCCEE
Confidence            66788888888776533222111      12246788999999999864  789999999999999997543  345677


Q ss_pred             EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCCeEEEEEcccc
Q 013235          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGHVAGFLSESIQ  264 (447)
Q Consensus       188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~~aavi~Epi~  264 (447)
                      ++...+|.+... +...            .|+..+..|....+.|..|    .+++++.+....   ..++.++++...+
T Consensus        87 l~~~~~~~~~~~-~~~~------------~g~~~~~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lv~l~~p~  149 (361)
T cd06452          87 VVDGLAHYTSYV-AAER------------AGLNVREVPNTGHPEYHIT----PEGYAEVIEEVKDEFGKPPALALLTHVD  149 (361)
T ss_pred             EEcCCcchHHHH-HHHh------------cCCEEEEEecCCCCCcccC----HHHHHHHHHHHhhccCCCceEEEEECCC
Confidence            777666654332 1111            1222222222111123344    455665554211   1245666666666


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCCccccccccCHHHH
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIA  342 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pigav~~~~~i~  342 (447)
                      ++.|...+    +++|.++|+++|+++|+||+|. +|...   +....++.  |++  +++|.++++.++|+++++++++
T Consensus       150 n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~~~~~--d~~~~s~~K~l~~~~~~G~l~~~~~~~  219 (361)
T cd06452         150 GNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRMP---VSGKELGA--DFIVGSGHKSMAASAPIGVLATTEEWA  219 (361)
T ss_pred             CCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCcC---CCHHHcCC--CEEEecCCccccCCCCeEEEEECHHHH
Confidence            77787655    8999999999999999999996 43221   22233343  655  5779998777999999999998


Q ss_pred             HhhcCCccc------ccCCCC--hHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          343 EVLTRRNYF------NTFGGN--PVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       343 ~~l~~~~~~------~T~~~n--p~a~aaala~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      +.+......      ..++++  +...+++.++++.+.+. +...+..+..+++.+.|+++. .+..+....+...++.+
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~-g~~v~~~~~~~~n~~~~  298 (361)
T cd06452         220 DIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIE-GIKQLGEKPKNHDLMFF  298 (361)
T ss_pred             HHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEECCCCCCCceEEE
Confidence            887542210      112222  22344455566544221 112222233456666665541 11111111233445545


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      +...-............++.+.|+++||++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~  328 (361)
T cd06452         299 ETPSFDEIAKKHKRRGYFLYSELKKRGIHG  328 (361)
T ss_pred             EcCCcchhhhhccccchhHHHHHHHcCceE
Confidence            432000000000011236889999999985

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.68  E-value=1.5e-14  Score=144.71  Aligned_cols=287  Identities=14%  Similarity=0.109  Sum_probs=176.6

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc--eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~--~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~  193 (447)
                      ..|.|.+++.+   ...|-...| .+...++.++|++.+..+.+  .+++++||+++++.++....  .+++++++..++
T Consensus        10 ~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--~~~~~vi~~~~~   83 (355)
T TIGR03301        10 TSATVRDAMLV---DWCHWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--PRDGKLLVLING   83 (355)
T ss_pred             CCHHHHHHhhh---hccCCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--CCCCeEEEECCC
Confidence            45777777665   222322223 36678899999998865433  57789999999999997653  245677888887


Q ss_pred             cccCchhhhh-ccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeC
Q 013235          194 YHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (447)
Q Consensus       194 yHG~~~~~~~-~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~  272 (447)
                      +++....... ..+.          .+..++.++.    +..|    .+++++.+... + ++..+++-..++.+|.+.+
T Consensus        84 ~~~~~~~~~a~~~g~----------~~~~i~~~~~----~~~d----~~~l~~~l~~~-~-~~~~v~~~~~~~~~G~~~~  143 (355)
T TIGR03301        84 AYGERLAKICEYLGI----------PHTDLNFSEY----EPPD----LNRIEEALAAD-P-DITHVATVHHETTTGILNP  143 (355)
T ss_pred             chhhHHHHHHHHcCC----------ceEEEecCCC----CCCC----HHHHHHHHHhC-C-CceEEEEEecCCcccchhH
Confidence            7765322111 1110          1222222111    1234    56777777542 2 4444443334556777776


Q ss_pred             CCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCCccccccccCHHHHHhhcCCc-
Q 013235          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN-  349 (447)
Q Consensus       273 ~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~-  349 (447)
                          +++|.++|++||+++|+|++++ ||..   .+.+..++  .|++  +++|.++++..+|++++++++++.+.... 
T Consensus       144 ----~~~i~~l~~~~~~~livD~~~s-~g~~---~~~~~~~~--~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~  213 (355)
T TIGR03301       144 ----LEAIAKVARSHGAVLIVDAMSS-FGAI---PIDIEELD--VDALIASANKCLEGVPGFGFVIARRDLLEASAGNAR  213 (355)
T ss_pred             ----HHHHHHHHHHcCCEEEEEeccc-cCCc---ccchhhcC--ccEEEecCCcccccCCceeEEEECHHHHHHhhCCCC
Confidence                8999999999999999999886 5422   22233334  4655  57899876545799999999988765210 


Q ss_pred             ----------------ccccCCCChHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHhcCCeee-Eeecc
Q 013235          350 ----------------YFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRG  408 (447)
Q Consensus       350 ----------------~~~T~~~np~a~aaala~L~~i~~~~----l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrg~G  408 (447)
                                      ....|..|+.++.++.++|+.+.+++    ..++.++..+++++.|+++  .+..+.. .+..+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~  291 (355)
T TIGR03301       214 SLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSP  291 (355)
T ss_pred             CceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCC
Confidence                            01234567777788788888875543    4455666777777777654  2222211 12345


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .++.+.+....      .....++.+.|.++||++.+.
T Consensus       292 ~~~~~~~~~~~------~~~~~~~~~~l~~~gi~i~~~  323 (355)
T TIGR03301       292 IIVSFLYPDDP------DFDFDDFYQELKERGFVIYPG  323 (355)
T ss_pred             cEEEEECCCCC------cchHHHHHHHHHHCCEEEECC
Confidence            66667663211      012357889999999998653

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.68  E-value=2.6e-14  Score=145.67  Aligned_cols=298  Identities=15%  Similarity=0.123  Sum_probs=175.2

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-cccccc-----chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEANE  172 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~~~-----~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e  172 (447)
                      ..|||..+      .|-.++.+.+++.+.+..... ....|.     .+...++.+.++++++...+.|++++++++++.
T Consensus        18 ~~yl~~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~   91 (397)
T TIGR01976        18 RVFFDNPA------GTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF   91 (397)
T ss_pred             eEEecCCc------cCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence            47888643      234678999999988865321 111122     234578999999998765557999999999988


Q ss_pred             HHHHHHHh-hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          173 LAIMMARL-YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       173 ~Aik~ar~-~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      .++..... ..++++|++.++.|++..........         ..|+.....+.... .+..|    .+++++.+.   
T Consensus        92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~~~~~~~~~~-~~~~~----~~~l~~~i~---  154 (397)
T TIGR01976        92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAE---------RAGAKVKWARVDEA-TGELH----PDDLASLLS---  154 (397)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHH---------hcCCEEEEEecccc-CCCcC----HHHHHHhcC---
Confidence            77765422 33557888887777654321111100         01222221111110 01123    566776664   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCC
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNG  329 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G  329 (447)
                      + ++.+|+++-+++++|.+.+    +++|.++|++||+++|+||+|. +| .+  .....  ...+|+++  +.|.+  |
T Consensus       155 ~-~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~--~~~~~--~~~~d~~~~s~~K~~--g  221 (397)
T TIGR01976       155 P-RTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HG--LIDVQ--ATGADFLTCSAYKFF--G  221 (397)
T ss_pred             C-CceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-cc--CCCHH--HcCCCEEEEechhhc--C
Confidence            2 4567777777788888876    9999999999999999999985 32 11  11122  23468775  56877  4


Q ss_pred             ccccccccCHHHHHhhcCCcccccC----------CCChHHHHHHHHHHHHHhhhh-----------------HHHHHHH
Q 013235          330 IPLGAVVTTPEIAEVLTRRNYFNTF----------GGNPVCTAAGHAVLKVIQKDK-----------------LQNNAHV  382 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~~~T~----------~~np~a~aaala~L~~i~~~~-----------------l~~~~~~  382 (447)
                      .++|++++++++++.+........+          ..|....++..++|+.+++.+                 ..++..+
T Consensus       222 ~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
T TIGR01976       222 PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENR  301 (397)
T ss_pred             CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHH
Confidence            5789999999988777542111111          123344455556676664322                 2334444


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeEe-----ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          383 VGSYLKERLTALKDKYGIIGDVR-----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~~vr-----g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.++++++|+++    +.+.-+.     ..+.++.+.+...         ...++.+.|.++||+++.
T Consensus       302 l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~  356 (397)
T TIGR01976       302 LAEYLLVGLSDL----PGVTLYGVARLAARVPTVSFTVHGL---------PPQRVVRRLADQGIDAWA  356 (397)
T ss_pred             HHHHHHHHHhcC----CCEEEeCCCCccCCCceEEEEeCCc---------CHHHHHHHHHHCCeEEEe
Confidence            555555555443    2121111     1344555554211         135688899999999874

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.68  E-value=2.7e-15  Score=146.50  Aligned_cols=278  Identities=16%  Similarity=0.115  Sum_probs=171.1

Q ss_pred             CHHHHHHHHHHHHhc---ccccccccchHHHHHHHHHHHhCC---CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEE
Q 013235          117 HPYVVDSIVNQIKRI---QHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL  190 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~---~~~~~~~~~~~~~elae~L~~~~~---~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~  190 (447)
                      +.-|.+|+++.+...   +++...+.......|++++++.++   ...++|++++++.||+..++....  ..++.||++
T Consensus        46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~--~~GDeVii~  123 (420)
T KOG0257|consen   46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL--NPGDEVIVF  123 (420)
T ss_pred             cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc--CCCCEEEEe
Confidence            345666666666543   111222233444556666666443   235679999999999998886443  378999999


Q ss_pred             cCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (447)
Q Consensus       191 ~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~  270 (447)
                      ++.|-.+.......++.+.+--..+..|-       .+-..|..|    .+++|..+..   +.-+.||+.|.+ +.|-+
T Consensus       124 eP~fd~Y~~~~~maG~tpv~v~~~~~~g~-------~~s~~~~~D----~~~le~~~t~---kTk~Ii~ntPhN-PtGkv  188 (420)
T KOG0257|consen  124 EPFFDCYIPQVVMAGGTPVFVPLKPKEGN-------VSSSDWTLD----PEELESKITE---KTKAIILNTPHN-PTGKV  188 (420)
T ss_pred             cCcchhhhhHHhhcCCcceeecccccccc-------ccCccccCC----hHHHHhhccC---CccEEEEeCCCC-CcCcc
Confidence            99999888877766554322111111111       122234455    5677777753   233445555554 45554


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc----cCCCCCEEEeecccc-CCccccccccCHHHHHhh
Q 013235          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVL  345 (447)
Q Consensus       271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~----~gv~pDivt~sK~lg-~G~pigav~~~~~i~~~l  345 (447)
                       .+.+.|++|.++|++||+++|.||||.-+-..|.++-.+..    +..+..+-.+||.+| .|+++||+++++.++..+
T Consensus       189 -fsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~  267 (420)
T KOG0257|consen  189 -FSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSAL  267 (420)
T ss_pred             -cCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhH
Confidence             48899999999999999999999999887777742222211    222334446899999 699999999988888777


Q ss_pred             cCCcccccCCCChHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEE
Q 013235          346 TRRNYFNTFGGNPVCTAAGHAVLKVIQ----------KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (447)
Q Consensus       346 ~~~~~~~T~~~np~a~aaala~L~~i~----------~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel  415 (447)
                      ........|.-+.....|..+++..-+          ..++....++..+.|.+.|.++  .++.  ...-.+.++++++
T Consensus       268 ~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l--g~~v--~~p~gayyl~adf  343 (420)
T KOG0257|consen  268 FPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL--GLKV--TGPEGAYYLWADF  343 (420)
T ss_pred             HHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc--CCcc--ccCCCceEEEEec
Confidence            654434455554444444444443211          1124555666667777777666  3322  2233456777887


Q ss_pred             e
Q 013235          416 V  416 (447)
Q Consensus       416 ~  416 (447)
                      .
T Consensus       344 s  344 (420)
T KOG0257|consen  344 S  344 (420)
T ss_pred             c
Confidence            6

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.67  E-value=4.3e-14  Score=144.35  Aligned_cols=297  Identities=15%  Similarity=0.095  Sum_probs=180.5

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc---cc----cccchHHHHHHHHHHHhCCC-CCceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS---TV----LYLNHAIADFAEALASKMPG-NLKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~---~~----~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGse  169 (447)
                      +..|||-.+      .|-.++.|.+++.+.+......   ..    ........+++++|+++++. +.+.|+|++|+++
T Consensus        19 ~~~yld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~   92 (401)
T PRK10874         19 AGVYLDSAA------TALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE   92 (401)
T ss_pred             ceEEEeCCc------ccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence            457888643      2345688999998877643111   00    11234567888999999986 5678999999999


Q ss_pred             HHHHHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe--EeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          170 ANELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       170 A~e~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~--~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      ++..+++...  ...++++|++.++.|++..........         ..|+  ..++.+.    .+..|    .+++++
T Consensus        93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~----~~~~d----~~~l~~  155 (401)
T PRK10874         93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQ---------QTGAKVVKLPLGA----DRLPD----VDLLPE  155 (401)
T ss_pred             HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHH---------HhCCEEEEEecCC----CCcCC----HHHHHH
Confidence            9999987652  124568899999988763221111100         0122  2333211    11123    566777


Q ss_pred             HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--  323 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--  323 (447)
                      .+.   + ++.+|++..+++.+|.+.+    +++|.++|+++|+++|+|++|. +|..-     .+.....+|++++|  
T Consensus       156 ~i~---~-~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~-----~~~~~~~~d~~~~s~~  221 (401)
T PRK10874        156 LIT---P-RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP-----ADVQALDIDFYAFSGH  221 (401)
T ss_pred             hcC---c-CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc-----CCchhcCCCEEEEecc
Confidence            664   2 4566777777788888876    8999999999999999999995 33221     12222347988776  


Q ss_pred             ccccCCccccccccCHHHHHhhcCCccc------------------ccC---CCChHHHHHHHHHHHHHhhhh---HHHH
Q 013235          324 KGIGNGIPLGAVVTTPEIAEVLTRRNYF------------------NTF---GGNPVCTAAGHAVLKVIQKDK---LQNN  379 (447)
Q Consensus       324 K~lg~G~pigav~~~~~i~~~l~~~~~~------------------~T~---~~np~a~aaala~L~~i~~~~---l~~~  379 (447)
                      |.+|. ..+|+++.++++++.+......                  .-|   ..|..+.++..++|+.+++.+   ..++
T Consensus       222 K~~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~  300 (401)
T PRK10874        222 KLYGP-TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESW  300 (401)
T ss_pred             cccCC-CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            96652 1258888999988766421100                  001   224446666667777765443   3455


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          380 AHVVGSYLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       380 ~~~~g~~l~~~L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+++.++++++|+++    +.+..++ ..+.++.+.+..-         ...++.+.|.++||.+++
T Consensus       301 ~~~l~~~l~~~l~~~----~g~~~~~~~~~~i~~~~~~~~---------~~~~~~~~L~~~gI~v~~  354 (401)
T PRK10874        301 SRSLATLAEDALAKL----PGFRSFRCQDSSLLAFDFAGV---------HHSDLVTLLAEYGIALRA  354 (401)
T ss_pred             HHHHHHHHHHHHhcC----CCEEEeCCCCCcEEEEEECCc---------CHHHHHHHHHHCCcEEec
Confidence            555566666655543    2222221 2234555554210         134677888899999865

>PLN02231 alanine transaminase

Probab=99.67  E-value=1.5e-14  Score=152.10  Aligned_cols=231  Identities=16%  Similarity=0.162  Sum_probs=143.8

Q ss_pred             CHHHHHHHHHHHHhc-cccccccc-chHHHHHHHHHHHhC------CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235          117 HPYVVDSIVNQIKRI-QHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDII  188 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~-~~~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii  188 (447)
                      +.++++++.+.+... ......|. .....+|++.+++++      +...++|++++++++|+..++++... ..++.|+
T Consensus       142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-~~gd~Vl  220 (534)
T PLN02231        142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEKDGIL  220 (534)
T ss_pred             CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-CCCCEEE
Confidence            346666666666542 11122232 334455555555543      34467899999999999999986532 2468899


Q ss_pred             EEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC--CCe-EEEEEccccC
Q 013235          189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS--GHV-AGFLSESIQG  265 (447)
Q Consensus       189 ~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~--~~~-aavi~Epi~~  265 (447)
                      +..++|.+........             |...+++|......|+.|    .++|++.++....  .++ +.+++.| ++
T Consensus       221 i~~P~Y~~y~~~~~~~-------------g~~~v~~~l~~~~~~~~d----~~~Le~~l~~~~~~~~~~k~ivl~nP-~N  282 (534)
T PLN02231        221 CPIPQYPLYSASIALH-------------GGTLVPYYLDEATGWGLE----ISELKKQLEDARSKGITVRALVVINP-GN  282 (534)
T ss_pred             EeCCCChhHHHHHHHc-------------CCEEEEEecCcccCCCCC----HHHHHHHHHHHhhcCCCeEEEEEeCC-CC
Confidence            9999998776544332             223333333222345556    5666666653211  134 4566667 55


Q ss_pred             CCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcccc-CCCccccccc----CC---CCCEE---Eeecccc--CCccc
Q 013235          266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-GSHFWGFEAH----GV---VPDIV---TMAKGIG--NGIPL  332 (447)
Q Consensus       266 ~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~-G~~~~~~~~~----gv---~pDiv---t~sK~lg--~G~pi  332 (447)
                      ++|.+. +++.+++|.++|++||++||.||+|..+... +..+..+...    |.   .+.++   +|||++.  .|+|+
T Consensus       283 PTG~vl-s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRi  361 (534)
T PLN02231        283 PTGQVL-AEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRG  361 (534)
T ss_pred             CCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccce
Confidence            667654 7899999999999999999999999988653 3222222111    11   12245   5899984  59999


Q ss_pred             ccccc---CHHHHHhhcCCcccccCCCChHHHHHHHHHH
Q 013235          333 GAVVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       333 gav~~---~~~i~~~l~~~~~~~T~~~np~a~aaala~L  368 (447)
                      ||+++   ++++++.+.... ..+.+.+.++++++...+
T Consensus       362 Gy~~~~~~~~~l~~~l~k~~-~~~~~s~~~~Q~~~~~~l  399 (534)
T PLN02231        362 GYMEVTGFTSDVREQIYKVA-SVNLCSNISGQILASLVM  399 (534)
T ss_pred             EEEEEecCCHHHHHHHHHHH-hhhcCCChHHHHHHHHHh
Confidence            99976   688888775432 233455666677666666

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.67  E-value=4.1e-15  Score=150.23  Aligned_cols=240  Identities=16%  Similarity=0.087  Sum_probs=158.7

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +.+++++||++|+..+++...  .+++.|++....|++.........         .
T Consensus        35 ~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~---------~  101 (369)
T cd00614          35 SRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLALL--KAGDHVVASDDLYGGTYRLFERLL---------P  101 (369)
T ss_pred             ECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHHc--CCCCEEEECCCCcchHHHHHHHHH---------h
Confidence            455688899999999998853  567788999999999998653  356778888888876542211110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       +|    .+++++.+.    .++.+|++|.++++.|.+.+    +++|.++|+++|+++|+||
T Consensus       102 ~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~  162 (369)
T cd00614         102 KLGIEVTFVDP-------DD----PEALEAAIK----PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDN  162 (369)
T ss_pred             hcCeEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            11332222111       12    456766664    25778999999999998887    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEE--EeeccccC-C-ccccccccCH-HHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pigav~~~~-~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      ++... ..      .......+|++  +++|.++| | .+.|++++++ ++++.+...........+|..+++++..|+.
T Consensus       163 t~~~~-~~------~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t  235 (369)
T cd00614         163 TFATP-YL------QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT  235 (369)
T ss_pred             CCcch-hc------CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC
Confidence            98522 11      11123346888  58899986 4 7889999987 8877776432223445678888877777754


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHH----hcCCee----------eEeecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKD----KYGIIG----------DVRGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~i~----------~vrg~Gl~~giel~  416 (447)
                      +.  ...++..++.+++.+.|++...    .|+.+.          ...|.|.|+.|++.
T Consensus       236 l~--~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~  293 (369)
T cd00614         236 LP--LRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK  293 (369)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence            32  2345556666677666665321    022110          12467999999984

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.66  E-value=8.6e-14  Score=142.42  Aligned_cols=299  Identities=12%  Similarity=0.062  Sum_probs=182.3

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-c-cccc-----cchHHHHHHHHHHHhCCC-CCceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-S-TVLY-----LNHAIADFAEALASKMPG-NLKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~-~~~~-----~~~~~~elae~L~~~~~~-~~~~v~~~~sGse  169 (447)
                      +..|||..+.      |..++.|.+++.+.+..... . ...+     ......+++++|++.+.. +.++|+|++|++|
T Consensus        23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~   96 (406)
T PRK09295         23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE   96 (406)
T ss_pred             ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence            4579997542      34678999999887765321 1 1111     134466888899999875 4578999999999


Q ss_pred             HHHHHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe--EeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          170 ANELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       170 A~e~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~--~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      ++..+++...  ...++++|++.+..||..........         ...|+  ..++.+.    .+..|    .+++++
T Consensus        97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~---------~~~g~~v~~v~~~~----~~~~d----~~~l~~  159 (406)
T PRK09295         97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLC---------ARVGAELRVIPLNP----DGTLQ----LETLPA  159 (406)
T ss_pred             HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHH---------HHcCcEEEEEecCC----CCCCC----HHHHHH
Confidence            9998887532  23355788888887776432211110         01122  2333211    11123    566776


Q ss_pred             HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--  323 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--  323 (447)
                      .+.   + ++.+|++..+++++|.+.+    +++|.++|+++|+++|+|++|. +|..-   ...+  ...+|++++|  
T Consensus       160 ~i~---~-~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~--~~~~D~~~~s~~  225 (406)
T PRK09295        160 LFD---E-RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP---VDVQ--ALDCDFYVFSGH  225 (406)
T ss_pred             hcC---C-CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc---cCch--hcCCCEEEeehh
Confidence            664   2 4567777778888899887    9999999999999999999995 44321   1122  2346998876  


Q ss_pred             ccccCCccccccccCHHHHHhhcCCcc----------------------cccCCCChHHHHHHHHHHHHHhhh---hHHH
Q 013235          324 KGIGNGIPLGAVVTTPEIAEVLTRRNY----------------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQN  378 (447)
Q Consensus       324 K~lg~G~pigav~~~~~i~~~l~~~~~----------------------~~T~~~np~a~aaala~L~~i~~~---~l~~  378 (447)
                      |.+|. -.+|+++.++++++.+.....                      +.+-.-|..+.++..++|+.+.+.   ...+
T Consensus       226 K~~gp-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~  304 (406)
T PRK09295        226 KLYGP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAE  304 (406)
T ss_pred             hccCC-CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            96552 236889999988776542100                      011134566777777888887653   3456


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       379 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+++.++++++|.++. ...+.+.. .++.++.+.+...         ....+.+.|.++||.++.
T Consensus       305 ~~~~l~~~l~~~l~~~~-~~~~~~~~-~~~~iv~~~~~~~---------~~~~~~~~L~~~gI~v~~  360 (406)
T PRK09295        305 YEQNLMHYALSQLESVP-DLTLYGPQ-NRLGVIAFNLGKH---------HAYDVGSFLDNYGIAVRT  360 (406)
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEeCCC-CCceEEEEEECCc---------CHHHHHHHHHhCCeEEec
Confidence            66667777777665541 11111111 1233555554211         124567778889998864

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.66  E-value=8.7e-14  Score=140.49  Aligned_cols=287  Identities=18%  Similarity=0.141  Sum_probs=171.3

Q ss_pred             CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh----cCCCeEEE
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY----TGCNDIIS  189 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~----t~~~~ii~  189 (447)
                      .+|.+.+|+.+.+.........++  .....++.++|+++++.+.+.++++++|++++..++..++..    .+++.|++
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~  111 (373)
T TIGR03812        32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV  111 (373)
T ss_pred             chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence            567888887776544221122233  344578889999998765566788999999999998766532    23357888


Q ss_pred             EcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (447)
Q Consensus       190 ~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~  269 (447)
                      .+++|..+...+ ...+          ..+..++.+.    .+..|    ++++++.+..   +.++.+++.| .+++|.
T Consensus       112 ~~~~h~~~~~~~-~~~G----------~~~~~v~~~~----~~~~d----~~~l~~~l~~---~~~~vv~~~~-~~~tG~  168 (373)
T TIGR03812       112 PESAHFSFEKAA-EMLG----------LELRYAPLDE----DYTVD----VKDVEDLIDD---NTIGIVGIAG-TTELGQ  168 (373)
T ss_pred             CCcchHHHHHHH-HHcC----------CeEEEEeeCC----CCCcC----HHHHHHHHhh---CcEEEEEECC-CCCCCc
Confidence            777765432211 1111          0122233211    12233    5667777653   2345666766 456788


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc--ccCC---CCCEEEee--ccccCCccccccc-cCHHH
Q 013235          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE--AHGV---VPDIVTMA--KGIGNGIPLGAVV-TTPEI  341 (447)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~--~~gv---~pDivt~s--K~lg~G~pigav~-~~~~i  341 (447)
                      +.+    +++|.++|+++|+++|+||+|.++-. +-.-|+..  ..++   ..|.++++  |-..++.|.|+++ .++++
T Consensus       169 ~~~----~~~i~~l~~~~~~~livD~a~~~~~~-~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~  243 (373)
T TIGR03812       169 IDD----IEELSKIALENGIYLHVDAAFGGFVI-PFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSY  243 (373)
T ss_pred             cCC----HHHHHHHHHHcCCeEEEEcCchhHHH-HHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHH
Confidence            766    99999999999999999999975421 00000011  1111   24666553  7323457887665 57788


Q ss_pred             HHhhcCCc-ccc-------cCCCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235          342 AEVLTRRN-YFN-------TFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (447)
Q Consensus       342 ~~~l~~~~-~~~-------T~~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~  410 (447)
                      .+.+.... +..       +...++.+++++.++|+.+.+++   +.++..++.++|+++|+++  .+..+  +.+...+
T Consensus       244 ~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~  319 (373)
T TIGR03812       244 LKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI--GFEPV--IEPVLNI  319 (373)
T ss_pred             HhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEE--cCCCceE
Confidence            77664221 111       01234567778888898876543   5678888888888888775  22211  1233344


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+.+.        .   ...+.+.|.++||++..
T Consensus       320 v~~~~~--------~---~~~v~~~L~~~gi~v~~  343 (373)
T TIGR03812       320 VAFEVD--------D---PEEVRKKLRDRGWYVSV  343 (373)
T ss_pred             EEEEeC--------C---HHHHHHHHHHCCceecc
Confidence            444431        1   24688899999999864

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.65  E-value=9e-14  Score=140.89  Aligned_cols=293  Identities=15%  Similarity=0.111  Sum_probs=170.1

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhc-ccccccc-----cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~-~~~~~~~-----~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~A  174 (447)
                      |||..+.      +-.++.|.+|+.+.+... ......+     ......++.+++++.++.+.+.|+|++||++++..+
T Consensus         2 yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a   75 (379)
T TIGR03402         2 YLDNNAT------TRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA   75 (379)
T ss_pred             cCCCcCC------CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence            6665432      346789999998877642 1111111     123456788999999987677899999999999999


Q ss_pred             HHHHHhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          175 IMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       175 ik~ar~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      ++..... .+++.|++....|++.......+..          .|+.....|....  +..|    .+++++.+.   + 
T Consensus        76 l~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~----------~G~~v~~v~~~~~--g~~~----~~~l~~~i~---~-  135 (379)
T TIGR03402        76 IKSALAAQPEKRHIITTAVEHPAVLSLCQHLEK----------QGYKVTYLPVDEE--GRLD----LEELRAAIT---D-  135 (379)
T ss_pred             HHHHHHhcCCCCeEEEcccccHHHHHHHHHHHH----------cCCEEEEEccCCC--CcCC----HHHHHHhcC---C-
Confidence            9876432 3455666666666543222111110          1222222221111  1123    566777664   2 


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCcc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIP  331 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~p  331 (447)
                      ++..+++..+++.+|.+.+    +++|.++|+++|+++|+|++|+ +|..     .++.....+|++++|  | +.|...
T Consensus       136 ~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~-----~~~~~~~~~D~~~~s~~K-~~gp~G  204 (379)
T TIGR03402       136 DTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI-----PIDLKEMNIDMLSLSGHK-LHGPKG  204 (379)
T ss_pred             CcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc-----ccCcccCCCCEEEEcHHH-cCCCCc
Confidence            5677888878888999887    8999999999999999999996 4421     123333567999999  9 654344


Q ss_pred             ccccccCHHHHHhhcCCcc-------cccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          332 LGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       332 igav~~~~~i~~~l~~~~~-------~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      +|++..+++..  +.+...       .....-|..+..+..++++.+.+  ++..++.+++.++++++|.+   ..+.+.
T Consensus       205 ~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~  279 (379)
T TIGR03402       205 VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA---RIPDAR  279 (379)
T ss_pred             eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---hCCCEE
Confidence            67777776541  221110       11122345555556667776643  12334555555566665553   122111


Q ss_pred             eEee----c-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          403 DVRG----R-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       403 ~vrg----~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                       +-|    + ...+.+.+..      ++   ..++...|.++||.++.
T Consensus       280 -~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~l~~~gI~v~~  317 (379)
T TIGR03402       280 -LNGDPTKRLPNTVNISFEY------IE---GEAILLLLDMEGICASS  317 (379)
T ss_pred             -EeCCCccCCCCEEEEEecC------CC---HHHHHHhhccCCEEEEc
Confidence             111    1 1122232211      11   24677788889999864

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.65  E-value=5.4e-14  Score=135.35  Aligned_cols=215  Identities=19%  Similarity=0.166  Sum_probs=140.8

Q ss_pred             CeEEEecCCcccccCC--CCCHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHHhCCCC--CceEEEcCCHHHHH
Q 013235           99 RRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEAN  171 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~l~~~~---~~~~~~~~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~  171 (447)
                      +.+|-+..|..++ +|  -..++..+|+.+.+....   ++...+.-..+.+.+|.|.+.++..  .+.|+++.+.++|+
T Consensus        61 k~iipl~~GDPsv-~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI  139 (447)
T KOG0259|consen   61 KPILPLGHGDPSV-YPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI  139 (447)
T ss_pred             ceeccCCCCCCCc-cccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence            3566555544432 11  134688899999887652   1222223344455566655555433  46799999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      |.++....  ..+..|+..+++|.=+...+... +....+++.            -....|..|    ++.+|.++++  
T Consensus       140 e~~i~~LA--~p~aNILlPrPGfp~Y~~~a~~~-~lEVR~ydl------------LPe~~weID----L~~veal~DE--  198 (447)
T KOG0259|consen  140 ELAISSLA--NPGANILLPRPGFPLYDTRAIYS-GLEVRYYDL------------LPEKDWEID----LDGVEALADE--  198 (447)
T ss_pred             HHHHHHhc--CCCCceecCCCCCchHHHhhhhc-CceeEeecc------------cCcccceec----hHHHHHhhcc--
Confidence            99997543  37789999999995433322211 111111211            112234455    7788888874  


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE---eecccc-
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT---MAKGIG-  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt---~sK~lg-  327 (447)
                       +++|.||++|.+..|++  ++.+-|++|.++|+|+|+++|.||||..+-..+..|.....+.-..-++|   +||+.= 
T Consensus       199 -NT~AivviNP~NPcGnV--ys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~V  275 (447)
T KOG0259|consen  199 -NTVAIVVINPNNPCGNV--YSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIV  275 (447)
T ss_pred             -CeeEEEEeCCCCCCccc--ccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccccccccc
Confidence             48899999999888854  57888999999999999999999999877666655545544443333444   668876 


Q ss_pred             CCccccccccC
Q 013235          328 NGIPLGAVVTT  338 (447)
Q Consensus       328 ~G~pigav~~~  338 (447)
                      .||++||++..
T Consensus       276 PGWRlGWi~~h  286 (447)
T KOG0259|consen  276 PGWRLGWIALH  286 (447)
T ss_pred             CCceeeeEEEe
Confidence            69999999874

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.64  E-value=7.3e-14  Score=140.74  Aligned_cols=286  Identities=14%  Similarity=0.084  Sum_probs=172.4

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC--ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~  193 (447)
                      .++.|.+|+.++.   .|.. ........++.++|+++++...  +.+++++||+++++.++....  ..++++++..++
T Consensus        14 ~~~~v~~~~~~~~---~~~~-~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--~~~~~vlv~~~~   87 (363)
T TIGR02326        14 TSRTVKEAMLFDW---CTWD-SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--PKDGKLLVVING   87 (363)
T ss_pred             CCHHHHHHhCCCC---CCCC-hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--CCCCeEEEEeCC
Confidence            3566666654433   1211 1234456778889999887643  368999999999999997543  255677777777


Q ss_pred             cccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeC
Q 013235          194 YHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (447)
Q Consensus       194 yHG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~  272 (447)
                      +|+.....+ ...+          ..+..++.+.  .  ...|    .+++++.+... + ++..+.+--+.+.+|.+.+
T Consensus        88 ~~~~~~~~~a~~~g----------~~~~~v~~~~--~--~~~d----~~~l~~~l~~~-~-~~~~v~~~~~~~~tG~~~~  147 (363)
T TIGR02326        88 AYGARIVQIAEYLG----------IPHHVVDTGE--V--EPPD----VVEVEAILAAD-P-AITHIALVHCETTTGILNP  147 (363)
T ss_pred             hhhHHHHHHHHHcC----------CceEEEeCCC--C--CCCC----HHHHHHHHhhC-C-CccEEEEEeecCCccccCc
Confidence            776532111 1100          1233333221  1  1123    56777777642 2 3334444445677888887


Q ss_pred             CCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCccccccccCHHHHHhhcCCc-
Q 013235          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRRN-  349 (447)
Q Consensus       273 ~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav~~~~~i~~~l~~~~-  349 (447)
                          +++|.++|++||+++|+|++|+ +|...   .....+  .+|+++  +.|.++++..+|+++++++.++.+.... 
T Consensus       148 ----i~~I~~l~~~~g~~livD~~~~-~g~~~---~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~  217 (363)
T TIGR02326       148 ----IEAVAKLAHRHGKVTIVDAMSS-FGGIP---IDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNAR  217 (363)
T ss_pred             ----HHHHHHHHHHcCCEEEEEcccc-ccCcc---cchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCC
Confidence                8999999999999999999985 55322   222333  468875  5699976555799999998876543210 


Q ss_pred             -----------------ccccCCCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHhcCCeee--Eee
Q 013235          350 -----------------YFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGD--VRG  406 (447)
Q Consensus       350 -----------------~~~T~~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrg  406 (447)
                                       ....|..++....+..++|+.+.++    +..++.+++.+++++.|+++  .+..+..  .+ 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~-  294 (363)
T TIGR02326       218 SLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFEPLLDDEIQ-  294 (363)
T ss_pred             ceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccC-
Confidence                             0123455666777777788776544    34566777777777777665  2222211  11 


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .+.+..+.+.+..      .....++.+.|.++||.+.+.
T Consensus       295 ~~~~~~~~~~~~~------~~~~~~v~~~L~~~gi~v~~g  328 (363)
T TIGR02326       295 SPIITSFYSPEDP------DYRFADFYQRLKEQGFVIYPG  328 (363)
T ss_pred             CceEEEEECCCCC------CCCHHHHHHHHHHCCEEEECC
Confidence            2344555543210      012356888999999999654

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.64  E-value=1.5e-13  Score=142.22  Aligned_cols=311  Identities=15%  Similarity=0.091  Sum_probs=176.3

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      |.-++||..--++       ..+.+++.+++....   ..| .+....+|.+++++++.  .+.+++++||++|+..++.
T Consensus        44 g~p~~D~~tds~t-------~a~~~a~~~a~~~g~---~~Y~~~~g~~~Lreaia~~~~--~~~vv~t~ggt~A~~~~~~  111 (460)
T PRK13238         44 EDVFIDLLTDSGT-------GAMSDRQWAAMMRGD---EAYAGSRSYYRLEDAVKDIFG--YPYTIPTHQGRAAEQILFP  111 (460)
T ss_pred             CCCCCCCCCCCCc-------hhhhHHHHHHHHhCC---cccCCCCCHHHHHHHHHHHhC--CCcEEECCCHHHHHHHHHH
Confidence            4456777642221       146777777765432   234 35677899999999984  4678999999999999987


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC---c-CCCCC--CChHHHHHHHHHHHHcc
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP---Y-RGVFG--ADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~---~-~~~~~--~d~~~~~~~le~~i~~~  250 (447)
                      ..  ..+++ ||...+.|........ ..+.          ....++....   . ..+|.  .|    .++|++.+...
T Consensus       112 al--l~pGD-Vii~~p~~~~~~~~i~-~~G~----------~~v~v~~~~~~~~~~~~~f~g~id----~e~Le~~i~~~  173 (460)
T PRK13238        112 VL--IKKGD-VVPSNYHFDTTRAHIE-LNGA----------TAVDLVIDEALDTGSRHPFKGNFD----LEKLEALIEEV  173 (460)
T ss_pred             Hh--CCCCC-EEccCCcccchHHHHH-HcCC----------EEEEEeccccccccccccccCCcC----HHHHHHHHhhc
Confidence            54  22344 7777676654332222 2111          1112221100   0 01222  34    67888888754


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----cccc---CCCccccc----ccCCCCCE
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----FART---GSHFWGFE----AHGVVPDI  319 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----fgr~---G~~~~~~~----~~gv~pDi  319 (447)
                      +++++++|+++..++.+|-.+.+.+.+++|+++|++||++||.|+++..    |...   |.......    ..+-..|+
T Consensus       174 ~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~  253 (460)
T PRK13238        174 GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADG  253 (460)
T ss_pred             CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcE
Confidence            4457888888876666554555788899999999999999999997742    2110   10000000    00123688


Q ss_pred             EEeeccccCC-ccccc-cccC-HHHHHhhcCCc---c-cccCCCChHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235          320 VTMAKGIGNG-IPLGA-VVTT-PEIAEVLTRRN---Y-FNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       320 vt~sK~lg~G-~piga-v~~~-~~i~~~l~~~~---~-~~T~~~np~a~aaala-~L~~i~~~~l~~~~~~~g~~l~~~L  391 (447)
                      ++|+ +.-.| .|+|+ ++++ +++++.+....   + +.||++++..+.+|++ +|+...++++.+...+..++|.+.|
T Consensus       254 ~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L  332 (460)
T PRK13238        254 LTMS-AKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGL  332 (460)
T ss_pred             EEEe-cccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHH
Confidence            8776 21112 24444 4455 57777775532   2 4599998777666665 4554434455544444557888877


Q ss_pred             HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHH-HHHHHHHHHH-hCCceee
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA-ETLYIMDKMK-GICALFF  444 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~-~~~~~~~~l~-~~Gvlv~  444 (447)
                      .+.  .++++.  +..|.++.+++.+-.. ..|... ...+++..|+ +.||.+-
T Consensus       333 ~~~--G~~~~~--p~Gg~~v~~d~~~~~~-~~~~~~~~~~~~a~~L~~e~GV~~~  382 (460)
T PRK13238        333 EEA--GVPIQT--PAGGHAVFVDAGKFLP-HIPAEQFPAQALACELYLEAGIRGV  382 (460)
T ss_pred             HHC--CCCeEc--cCCceEEEEEchhcCC-CCCCCCCchHHHHHHHHHHcCeeee
Confidence            774  444443  3445666666632100 001000 1245666665 5688763

>PLN02397 aspartate transaminase

Probab=99.64  E-value=4.1e-14  Score=145.50  Aligned_cols=272  Identities=15%  Similarity=0.050  Sum_probs=145.4

Q ss_pred             chHHHHHHHHHHHhCCCC------CceEE--EcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          140 NHAIADFAEALASKMPGN------LKVVF--FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~------~~~v~--~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      .....+|.+.+++++...      .+.|.  .+.+|+.+.+++..+.....+++.|++.+++|.+....+...       
T Consensus        90 ~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~-------  162 (423)
T PLN02397         90 IEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDA-------  162 (423)
T ss_pred             cCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHc-------
Confidence            445677777777765321      12231  123333343433333333336688999999997776544433       


Q ss_pred             ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE
Q 013235          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (447)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll  291 (447)
                            |...+++|......|+.|    .+.+++.+....+ +..++++...++++|.+. +.+.+++|.++|++||+++
T Consensus       163 ------g~~~~~v~l~~~~~~~~d----~~~l~~~l~~~~~-~~~~i~~~~P~NPTG~v~-s~e~l~~i~~~a~~~~~~v  230 (423)
T PLN02397        163 ------GVPVRTYRYYDPKTRGLD----FDGLLEDLKAAPD-GSFVLLHACAHNPTGVDP-TPEQWEQISDLIKSKNHLP  230 (423)
T ss_pred             ------CCeEEEeecccCcCCccC----HHHHHHHHHhCCC-CCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEE
Confidence                  222223222111123345    4445555543322 444555554566677665 7889999999999999999


Q ss_pred             EEeccccCccccCC--Cccccccc-CCCCCEE---Eeecccc-CCccccccc---cCHHHHHhhc----CCcccccCCCC
Q 013235          292 IADEVQAGFARTGS--HFWGFEAH-GVVPDIV---TMAKGIG-NGIPLGAVV---TTPEIAEVLT----RRNYFNTFGGN  357 (447)
Q Consensus       292 I~DEv~tGfgr~G~--~~~~~~~~-gv~pDiv---t~sK~lg-~G~pigav~---~~~~i~~~l~----~~~~~~T~~~n  357 (447)
                      |.||+|.+|...+.  .......+ ...++++   +|||.++ .|+|+||++   .++++++.+.    .......++.+
T Consensus       231 I~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (423)
T PLN02397        231 FFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPP  310 (423)
T ss_pred             EEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCc
Confidence            99999999964330  11111111 1112344   6899999 799999984   4666554332    11111223345


Q ss_pred             hHHHHHHHHHHHHHh-h-------hhHHHHHHHHHHHHHHHHHHHHHhcCCeee-EeecceeEEEEEeeCCCCCCCCHHH
Q 013235          358 PVCTAAGHAVLKVIQ-K-------DKLQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAE  428 (447)
Q Consensus       358 p~a~aaala~L~~i~-~-------~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrg~Gl~~giel~~~~~~~~p~~~~  428 (447)
                      .+++.++.+.|+.-. .       +++.+..+++.+.+.+.|+++.... .+.. .+..|+++++.+.            
T Consensus       311 ~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~-~~~~~~p~gg~fl~~~l~------------  377 (423)
T PLN02397        311 IHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPG-DWSHITKQIGMFSFTGLN------------  377 (423)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCcccCCceEEEecCCC------------
Confidence            566666666663210 0       1223344444444555444431000 0122 2445777777651            


Q ss_pred             HHHHHHHHH-hCCceee
Q 013235          429 TLYIMDKMK-GICALFF  444 (447)
Q Consensus       429 ~~~~~~~l~-~~Gvlv~  444 (447)
                       .++++.|+ +.||++.
T Consensus       378 -~~~~~~Ll~~~~V~v~  393 (423)
T PLN02397        378 -KEQVDRMTKEYHIYMT  393 (423)
T ss_pred             -HHHHHHHHHhCCEEEC
Confidence             23667775 5599874

>PLN02651 cysteine desulfurase

Probab=99.62  E-value=6.3e-14  Score=141.32  Aligned_cols=247  Identities=16%  Similarity=0.095  Sum_probs=153.7

Q ss_pred             CCCCHHHHHHHHHHHHhcc-cccc------cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--cCC
Q 013235          114 GHCHPYVVDSIVNQIKRIQ-HSTV------LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--TGC  184 (447)
Q Consensus       114 Gh~~p~v~~A~~~~l~~~~-~~~~------~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--t~~  184 (447)
                      +--++.|.+++.+.+.... ....      ....+...++.++|++.+..+.+.++|++|+|+++..+++.+...  .++
T Consensus         9 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g   88 (364)
T PLN02651          9 TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKK   88 (364)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCC
Confidence            3457899999988775421 1110      111344667889999998766678999999999999999876432  345


Q ss_pred             CeEEEEcCCcccCchhhhhccCCCCccccccCCC--eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc
Q 013235          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG--VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (447)
Q Consensus       185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g--~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep  262 (447)
                      ++|++....|++.......+.          ..|  +..++...    .+..|    .+++++.+..    ++.++++..
T Consensus        89 ~~vl~~~~~h~s~~~~~~~~~----------~~g~~v~~v~~~~----~~~~d----~~~l~~~i~~----~t~lv~v~~  146 (364)
T PLN02651         89 KHVITTQTEHKCVLDSCRHLQ----------QEGFEVTYLPVKS----DGLVD----LDELAAAIRP----DTALVSVMA  146 (364)
T ss_pred             CEEEEcccccHHHHHHHHHHH----------hcCCEEEEEccCC----CCcCC----HHHHHHhcCC----CcEEEEEEC
Confidence            677776655544322211111          012  22333211    11123    5667776642    567888888


Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHH
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPE  340 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~  340 (447)
                      +++.+|.+.+    +++|.++|+++|+++++|.+|+ +|..   .+-.+.  ..+|+++++  | +++...+|+++.+++
T Consensus       147 ~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~---~~~~~~--~~~D~~~~s~hK-~~gp~G~g~l~v~~~  215 (364)
T PLN02651        147 VNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI---PVDVDD--LGVDLMSISGHK-IYGPKGVGALYVRRR  215 (364)
T ss_pred             CCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc---ccCccc--CCCCEEEechhh-hCCCCceEEEEEcCC
Confidence            8888999887    9999999999999999999996 4321   122233  346999876  7 643345788888887


Q ss_pred             HHHhhcCCcc-------cccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Q 013235          341 IAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       341 i~~~l~~~~~-------~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~  393 (447)
                      ..+.+.....       .....-|..++.+..++|+.+.+  ++..++.+++.++++++|.+
T Consensus       216 ~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~  277 (364)
T PLN02651        216 PRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA  277 (364)
T ss_pred             CCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            6554433211       11222345566666678887754  23445666666666666654

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.62  E-value=1.7e-13  Score=137.64  Aligned_cols=282  Identities=14%  Similarity=0.119  Sum_probs=172.6

Q ss_pred             CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~  192 (447)
                      .+++|.+|+.+.+..     ..+.  .....++++.|++.+.. ..+.+++++||++|+..+++...  ..++.|++...
T Consensus        10 ~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--~~g~~vl~~~~   82 (356)
T cd06451          10 VPPRVLKAMNRPMLG-----HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--EPGDKVLVGVN   82 (356)
T ss_pred             CCHHHHHHhCCCccC-----CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--CCCCEEEEecC
Confidence            467777777543221     1222  34467888999999875 33468899999999999997542  35678888877


Q ss_pred             CcccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          193 AYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       193 ~yHG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      ++++... ......+          ..+..++...    .+..|    .+++++.+..   .+++++++...+++.|.+.
T Consensus        83 ~~~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~~----~~~l~~~i~~---~~~~~v~i~~~~~~~G~~~  141 (356)
T cd06451          83 GVFGDRWADMAERYG----------ADVDVVEKPW----GEAVS----PEEIAEALEQ---HDIKAVTLTHNETSTGVLN  141 (356)
T ss_pred             CchhHHHHHHHHHhC----------CCeEEeecCC----CCCCC----HHHHHHHHhc---cCCCEEEEeccCCCccccc
Confidence            7665321 1111111          1223333211    12234    5667777653   2456676666677788887


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcC--
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTR--  347 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~--  347 (447)
                      +    +++|.++|+++|+++|+|++|. +|..   .+....+  .+|+++.  .|.++++..+|+++.+++.++.+..  
T Consensus       142 ~----~~~i~~~a~~~~~~li~D~~~~-~g~~---~~~~~~~--~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~  211 (356)
T cd06451         142 P----LEGIGALAKKHDALLIVDAVSS-LGGE---PFRMDEW--GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKT  211 (356)
T ss_pred             C----HHHHHHHHHhcCCEEEEeeehh-ccCc---ccccccc--CccEEEecCchhccCCCCcceeEECHHHHHHHHhcC
Confidence            6    9999999999999999999985 5422   2222223  3577754  5999876678999999998877652  


Q ss_pred             C--cc---------------cccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec
Q 013235          348 R--NY---------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (447)
Q Consensus       348 ~--~~---------------~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~  407 (447)
                      .  ..               +.+.+.++...+++.++++.+.+.   .+.++.+++.+++++.|.++  .+..+....+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~  289 (356)
T cd06451         212 KPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL--GLKLLAKPELR  289 (356)
T ss_pred             CCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccC
Confidence            1  11               111123455566777888877654   35667777778888887765  23222221222


Q ss_pred             -ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          408 -GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       408 -Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                       +.+..+.+. +.       ....++++.|.++ ||.+.+
T Consensus       290 ~~~~~~~~~~-~~-------~~~~~~~~~L~~~~gI~~~~  321 (356)
T cd06451         290 SPTVTAVLVP-EG-------VDGDEVVRRLMKRYNIEIAG  321 (356)
T ss_pred             CCceEEEECC-CC-------CCHHHHHHHHHHhCCEEEec
Confidence             222233331 11       1245789999998 998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.62  E-value=4.3e-14  Score=143.26  Aligned_cols=241  Identities=17%  Similarity=0.174  Sum_probs=149.2

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..+|.++...+|+++|++..+.  +.+++++||++|+.++++...  ..+++|++... .||.+...+...        .
T Consensus        48 y~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al~--~~Gd~Vl~~~~-~~~~t~~~~~~~--------~  114 (380)
T TIGR01325        48 YSRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTLL--QAGDHVVASRS-LFGSTVGFISEI--------L  114 (380)
T ss_pred             eecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEecC-CcchHHHHHHHH--------H
Confidence            3467788899999999998854  567889999999999997542  24567777654 555554332110        0


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                      ...|+.....+.       .|    .+++++.+.    .++++|++|..+++.|.+.+    +++|.++|+++|+++|+|
T Consensus       115 ~~~g~~v~~v~~-------~d----~~~l~~~i~----~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD  175 (380)
T TIGR01325       115 PRFGIEVSFVDP-------TD----LNAWEAAVK----PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVD  175 (380)
T ss_pred             HHhCCEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEE
Confidence            011222222111       12    455666553    25789999988888888876    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEE--eeccccC-Cccc-cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      |++..+-  +     .......+|+++  ++|.++| |.++ |++++++++++.+...........+|..++.++..|+.
T Consensus       176 ~a~~~~~--~-----~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~t  248 (380)
T TIGR01325       176 NVFATPV--L-----QQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLET  248 (380)
T ss_pred             CCCcccc--c-----CCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCc
Confidence            9986321  1     111233469886  7899986 5665 77888888877665321111112346666666666665


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHH--H--hcCCe----------eeEeecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALK--D--KYGII----------GDVRGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~--~--~~~~i----------~~vrg~Gl~~giel~  416 (447)
                      +..  ..++..+....+.+.|++..  +  .||..          ....|.|-|+.|++.
T Consensus       249 l~~--r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~  306 (380)
T TIGR01325       249 LSL--RMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA  306 (380)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence            532  23334444444444444321  0  02111          112467889999995

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.62  E-value=7.4e-14  Score=139.76  Aligned_cols=273  Identities=18%  Similarity=0.154  Sum_probs=167.2

Q ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhh
Q 013235          122 DSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT  201 (447)
Q Consensus       122 ~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~  201 (447)
                      +++.+.+....+    +..+...+++++|+++++  .+.+++++||++|++.+++..+. ..++.|++...+||+.....
T Consensus         3 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~--~~~~~~~~sgt~al~~~l~~l~~-~~gd~vl~~~~~~~~~~~~~   75 (352)
T cd00616           3 EAVEEVLDSGWL----TLGPKVREFEKAFAEYLG--VKYAVAVSSGTAALHLALRALGI-GPGDEVIVPSFTFVATANAI   75 (352)
T ss_pred             HHHHHHHHcCCc----cCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCC-CCCCEEEeCCcchHHHHHHH
Confidence            345554444322    346778899999999985  35688899999999999987642 35678999999998654433


Q ss_pred             hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHH
Q 013235          202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY  281 (447)
Q Consensus       202 ~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~  281 (447)
                      ...             |+.....+... ..+..|    .+++++.+.   + ++++|++..+   .|...+    +++|.
T Consensus        76 ~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~---~-~~~~v~~~~~---~G~~~~----~~~i~  126 (352)
T cd00616          76 LLL-------------GATPVFVDIDP-DTYNID----PELIEAAIT---P-RTKAIIPVHL---YGNPAD----MDAIM  126 (352)
T ss_pred             HHc-------------CCeEEEEecCC-CcCCcC----HHHHHHhcC---c-CCeEEEEECC---CCCcCC----HHHHH
Confidence            221             22222211111 122234    556666653   2 5667776543   455544    89999


Q ss_pred             HHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcC---Cc----
Q 013235          282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTR---RN----  349 (447)
Q Consensus       282 ~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~---~~----  349 (447)
                      ++|+++|+++|+|++|+ +|...    .....+...|+.++|    |.+++| +.|+++++ +++.+.+..   ..    
T Consensus       127 ~l~~~~~i~li~D~a~~-~g~~~----~~~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~  200 (352)
T cd00616         127 AIAKRHGLPVIEDAAQA-LGATY----KGRKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRD  200 (352)
T ss_pred             HHHHHcCCeEEEECCCC-CCCeE----CCEEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999997 43221    112234446888877    999543 34667665 566654432   10    


Q ss_pred             --------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe---ecceeEEEEEeeC
Q 013235          350 --------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR---GRGFLLGVEFVTD  418 (447)
Q Consensus       350 --------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr---g~Gl~~giel~~~  418 (447)
                              ...++..+++.++.++..++.+  +++.++.+++.+++++.|.++. ...++....   ....++.+.+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  277 (352)
T cd00616         201 RFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLP-GIRLPDVPPGVKHSYHLYVIRLDPE  277 (352)
T ss_pred             CCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCceeeEEEEEEECCc
Confidence                    1123456788888888777655  4466778888889988887742 222222111   1234455554210


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          419 RQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       419 ~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                        .    .....++.+.|.++||.++.
T Consensus       278 --~----~~~~~~v~~~L~~~gI~~~~  298 (352)
T cd00616         278 --A----GESRDELIEALKEAGIETRV  298 (352)
T ss_pred             --C----CCCHHHHHHHHHHCCCCeee
Confidence              0    01246788999999997763

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.61  E-value=2.5e-13  Score=139.28  Aligned_cols=288  Identities=14%  Similarity=0.089  Sum_probs=162.1

Q ss_pred             CCHHHHHHHHHHH-Hhcccc--cccc--cchHHHHHHH----HHHHhCCCCCceE-EEcCCHHHHHHHHHHHHHhhcCCC
Q 013235          116 CHPYVVDSIVNQI-KRIQHS--TVLY--LNHAIADFAE----ALASKMPGNLKVV-FFTNSGTEANELAIMMARLYTGCN  185 (447)
Q Consensus       116 ~~p~v~~A~~~~l-~~~~~~--~~~~--~~~~~~elae----~L~~~~~~~~~~v-~~~~sGseA~e~Aik~ar~~t~~~  185 (447)
                      -||+|.+|+...+ .+++..  ..++  -++...+|++    ++++++..  +.+ ++++||+.||.+++...  ..+++
T Consensus        40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~--~~alv~~~SG~~A~~~~l~al--~~~GD  115 (416)
T PRK13034         40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC--DYANVQPHSGSQANGAVYLAL--LKPGD  115 (416)
T ss_pred             CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC--CceEEecCCcHHHHHHHHHHh--cCCCC
Confidence            4899999999985 665432  1122  1577788888    99998854  445 45799999999999754  33567


Q ss_pred             eEEEEcCCcccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE-ccc
Q 013235          186 DIISLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS-ESI  263 (447)
Q Consensus       186 ~ii~~~~~yHG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~-Epi  263 (447)
                      .|++.+.++.+... ++. .+....+        .....+.-. ...+..|    .+++++.+...   ++.+|++ +++
T Consensus       116 ~Vl~~~~~~~~~~~~g~~-~~~~~~~--------~~~~~~~~~-~~~~~~d----~~~le~~l~~~---~~klVi~~~~~  178 (416)
T PRK13034        116 TILGMSLSHGGHLTHGAK-VSLSGKW--------YNAVQYGVD-RLTGLID----YDEVEELAKEH---KPKLIIAGFSA  178 (416)
T ss_pred             EEEEcCccceeeeecCCc-ceeccce--------eeeEEcccc-cccCCcC----HHHHHHHHhhc---CCeEEEECCCc
Confidence            77776666544111 111 0000000        000000000 0011134    56677776532   3456777 566


Q ss_pred             cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCccccccccCHH-
Q 013235          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPE-  340 (447)
Q Consensus       264 ~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav~~~~~-  340 (447)
                      .|.   ..+    +++|.++|++||+++|+|++|+ +|-.+. .......+ ..|+++  ++|.++++. -|+++++++ 
T Consensus       179 ~g~---~~d----l~~l~~la~~~g~~livD~Aha-~G~~~~-g~~~~~~~-~~Di~~~s~~K~l~g~~-GG~v~~~~~~  247 (416)
T PRK13034        179 YPR---ELD----FARFREIADEVGALLMVDMAHI-AGLVAA-GEHPNPFP-HAHVVTTTTHKTLRGPR-GGMILTNDEE  247 (416)
T ss_pred             ccc---ccC----HHHHHHHHHHcCCEEEEeCccc-ccCccc-CCCCCCCC-CceEEEEeCcccCCCCC-CeEEEECcHH
Confidence            543   333    8899999999999999999985 655442 11011111 368775  679996432 255566554 


Q ss_pred             HHHhhcCCcccccCCC-Ch-HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEe
Q 013235          341 IAEVLTRRNYFNTFGG-NP-VCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV  416 (447)
Q Consensus       341 i~~~l~~~~~~~T~~~-np-~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~  416 (447)
                      +.+.+....+.+..++ +| ..++++++.++.++.  +++.++++++.++|+++|+++  .++.+.. .+...++.|.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~--G~~~~~~-~~~t~i~~v~~~  324 (416)
T PRK13034        248 IAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER--GYDLVSG-GTDNHLLLVDLR  324 (416)
T ss_pred             HHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc--CCEeccC-CCCCcEEEEEcC
Confidence            4444433222111122 23 333334455554432  345789999999999998775  3433211 123455566664


Q ss_pred             eCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          417 TDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       417 ~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++..       ....+.+.|.+.||++..
T Consensus       325 ~~~~-------~~~~~~~~L~~~GI~v~~  346 (416)
T PRK13034        325 PKGL-------SGKDAEQALERAGITVNK  346 (416)
T ss_pred             CCCC-------CHHHHHHHHHhCCcEEec
Confidence            3211       124456788889999863

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.61  E-value=9.2e-14  Score=142.04  Aligned_cols=259  Identities=14%  Similarity=0.116  Sum_probs=156.7

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc-------ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL-------YLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-------~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~  171 (447)
                      +.|||..+.      +-.++.|.+++.+.+.........       ...+...+++++|+++++.+.+.|+|++|+++++
T Consensus         4 ~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~   77 (402)
T TIGR02006         4 PIYLDYAAT------TPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN   77 (402)
T ss_pred             cEEeeCCcC------CCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence            478997653      235799999998877533111110       1124566788889999876667899999999999


Q ss_pred             HHHHHHHHh-h-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          172 ELAIMMARL-Y-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       172 e~Aik~ar~-~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      +.+++.... . .+++.|++.... |.............       ...+..++..  ..  +..|    .+++++.+..
T Consensus        78 ~~~l~~l~~~~~~~g~~Vi~~~~~-h~s~~~~~~~~~~~-------g~~v~~v~~~--~~--~~~d----~~~l~~~l~~  141 (402)
T TIGR02006        78 NLAIKGIAHFYKSKGNHIITSKTE-HKAVLDTCRYLERE-------GFEVTYLPPK--SN--GLID----LEELKAAIRD  141 (402)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCCc-cHHHHHHHHHHHhc-------CCEEEEEccC--CC--CcCC----HHHHHHhcCC
Confidence            999876543 2 234566665554 44433222110000       0012233221  11  1123    5666666642


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                          ++.++++..+++++|.+.+    +++|.++|+++|+++|+|++|+ +|..     .++..+..+|+++++  |.+|
T Consensus       142 ----~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~-----~~~~~~~~~D~~~~s~~K~~g  207 (402)
T TIGR02006       142 ----DTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI-----PINVNELKVDLMSISGHKIYG  207 (402)
T ss_pred             ----CCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc-----ccCccccCCCEEEEehhhhcC
Confidence                4678888888999999887    9999999999999999999996 4322     123334568999999  9664


Q ss_pred             CCccccccccCHHHHHhhcCCcc-------cccCCCChHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHH
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQKD--KLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~-------~~T~~~np~a~aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l  394 (447)
                       ...+|+++.+++....+....+       +....-|...+++..++|+.+++.  ...++.+++.++++++|+++
T Consensus       208 -p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~  282 (402)
T TIGR02006       208 -PKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI  282 (402)
T ss_pred             -CCceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence             2347888887654433322111       111223344444445788877542  23455566666666666543

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.61  E-value=1e-12  Score=134.25  Aligned_cols=300  Identities=16%  Similarity=0.134  Sum_probs=177.8

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc-c--ccc----cchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-T--VLY----LNHAIADFAEALASKMPGN-LKVVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-~--~~~----~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~  171 (447)
                      .|||..+      .|-.++.|.+|+.+.+...... .  ..+    ......++.+.|++++..+ .++|+|++|+++++
T Consensus        20 ~yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l   93 (403)
T TIGR01979        20 VYLDSAA------TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI   93 (403)
T ss_pred             EEEeCcc------ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence            6888642      3445788999988766543111 1  111    1234567888999988765 46899999999999


Q ss_pred             HHHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          172 ELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       172 e~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ..++....  ...+++.|++.+..|++..........         ..|+.....|...  .+..|    .+++++.+. 
T Consensus        94 ~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~---------~~g~~~~~v~~~~--~~~~~----~~~l~~~i~-  157 (403)
T TIGR01979        94 NLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAE---------RTGATLKFIPLDD--DGTLD----LDDLEKLLT-  157 (403)
T ss_pred             HHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHH---------hcCcEEEEEecCC--CCCCC----HHHHHHHhc-
Confidence            98887542  133567788777777654322111100         0122221111111  11123    466766664 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--ecccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIG  327 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg  327 (447)
                         +++.++++.-+++.+|.+.+    +++|.++|+++|+++|+|++|. +|..   .....  ...+|++++  .|.+|
T Consensus       158 ---~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~---~~~~~--~~~~d~~~~s~~K~~g  224 (403)
T TIGR01979       158 ---EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM---PVDVQ--ALDCDFYVFSGHKMYG  224 (403)
T ss_pred             ---cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc---ccCcc--ccCCCEEEEecccccC
Confidence               25667777777888898887    9999999999999999999985 3321   11122  234788864  59765


Q ss_pred             CCccccccccCHHHHHhhcCCccc-----------cc-------C---CCChHHHHHHHHHHHHHhhh---hHHHHHHHH
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYF-----------NT-------F---GGNPVCTAAGHAVLKVIQKD---KLQNNAHVV  383 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~-----------~T-------~---~~np~a~aaala~L~~i~~~---~l~~~~~~~  383 (447)
                      . ..+|++++++++.+.+.....+           .+       |   ..|..+.++..++|+.+.+.   .+.++..++
T Consensus       225 p-~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l  303 (403)
T TIGR01979       225 P-TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHEL  303 (403)
T ss_pred             C-CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            2 2378888998887765421000           00       1   12445566666778776543   456677777


Q ss_pred             HHHHHHHHHHHHHhcCCeeeE--eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          384 GSYLKERLTALKDKYGIIGDV--RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~v--rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .++++++|+++. ...++...  ..++.++.+.+...         ...++.+.|.++||.++.
T Consensus       304 ~~~l~~~l~~~~-g~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~L~~~gI~v~~  357 (403)
T TIGR01979       304 TAYALERLGEIP-GLRIYGPRDAEDRGGIISFNVEGV---------HPHDVGTILDEEGIAVRS  357 (403)
T ss_pred             HHHHHHHHhcCC-CEEEeCCCCccccCceEEEEeCCc---------CHHHHHHHHhhCCEEEcc
Confidence            777777666541 11111110  01356777776211         134577888899998864

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.60  E-value=4e-13  Score=136.23  Aligned_cols=295  Identities=19%  Similarity=0.142  Sum_probs=174.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-ccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~  173 (447)
                      .|||..      ..|..++.|.+|+.+.+..... ...     ........++++.|+++++.+.+.|+|++|+++++..
T Consensus         2 ~yld~a------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~   75 (381)
T PRK02948          2 IYLDYA------ATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYL   75 (381)
T ss_pred             EeccCC------CCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHH
Confidence            466643      2345689999999887765321 111     1123456788899999987667789999999999999


Q ss_pred             HHHHHHhh--cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       174 Aik~ar~~--t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ++......  .+++.|++. ...|...........         ..|+.....|...  .+..|    .+++++.+.   
T Consensus        76 ~~~~~~~~~~~~g~~vv~~-~~~h~s~~~~~~~~~---------~~g~~v~~v~~~~--~~~~d----~~~l~~~l~---  136 (381)
T PRK02948         76 AIQSLLNALPQNKKHIITT-PMEHASIHSYFQSLE---------SQGYTVTEIPVDK--SGLIR----LVDLERAIT---  136 (381)
T ss_pred             HHHHHHHhccCCCCEEEEC-CcccHHHHHHHHHHH---------hCCCEEEEEeeCC--CCCCC----HHHHHHhcC---
Confidence            98766421  233455544 444433322221110         0122222222111  11233    566766653   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccC-
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-  328 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-  328 (447)
                      + ++..|+++.+++++|.+.+    +++|.++|+++|+++|+|++|+ ||...   ...+.++  .|+++  ++|.+|. 
T Consensus       137 ~-~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~---~~~~~~~--~d~~~~s~~K~~gp~  205 (381)
T PRK02948        137 P-DTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP---IDVFEMG--IDSLSVSAHKIYGPK  205 (381)
T ss_pred             C-CCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc---cCcccCC--CCEEEecHHhcCCCC
Confidence            2 4567888888888999987    8999999999999999999885 66432   1123333  57774  6697762 


Q ss_pred             CccccccccCHHHH-HhhcC----CcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          329 GIPLGAVVTTPEIA-EVLTR----RNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       329 G~pigav~~~~~i~-~~l~~----~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      |  +|+++.++++. ..+..    ...+..+..|..+.+++.++|+.+.+  ++..++++++.++++++|+++  .+. +
T Consensus       206 G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~-v  280 (381)
T PRK02948        206 G--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL--PLP-I  280 (381)
T ss_pred             c--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-E
Confidence            4  68888777641 11110    00123455778888888888887632  345566777777777777665  222 1


Q ss_pred             eeEee-----cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          402 GDVRG-----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       402 ~~vrg-----~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      . ..+     ...++++.+..     .    ...++...|.++||.++.
T Consensus       281 ~-~~~~~~~~~~~i~~~~~~~-----~----~~~~~~~~l~~~gI~v~~  319 (381)
T PRK02948        281 E-VEGHSTSCLPHIIGVTIKG-----I----EGQYTMLECNRRGIAIST  319 (381)
T ss_pred             E-EeCCCccCcCCEEEEEeCC-----C----CHHHHHHhcccCCEEEEc
Confidence            1 111     11233333311     0    134566778889999974

>PRK08637 hypothetical protein; Provisional

Probab=99.60  E-value=2e-13  Score=138.98  Aligned_cols=253  Identities=14%  Similarity=0.087  Sum_probs=151.6

Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHH
Q 013235          159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM  238 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~  238 (447)
                      +++++++++++++..+++...  ..++.|++.+++|...........            |...+.+|... ..++-|   
T Consensus        70 ~~I~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~------------g~~vv~v~~~~-~~~~~d---  131 (388)
T PRK08637         70 SLPIVTNALTHGLSLVADLFV--DQGDTVLLPDHNWGNYKLTFNTRR------------GAEIVTYPIFD-EDGGFD---  131 (388)
T ss_pred             ceeeEccchHHHHHHHHHHhc--CCCCEEEEcCCCCccHHHHHHHhc------------CCEEEEecccC-CCCcCC---
Confidence            568999999999998887543  256789999999976654322111            22233333210 111223   


Q ss_pred             HHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-----hCCEEEEeccccCccccCCCccc-cc
Q 013235          239 YAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-----AGGLCIADEVQAGFARTGSHFWG-FE  311 (447)
Q Consensus       239 ~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tGfgr~G~~~~~-~~  311 (447)
                       ++++++.+.. ..+.+...++..| ++++|.+. +++.+++|.++|++     |++++|.||+|.+|-..+...-. +.
T Consensus       132 -~~~l~~~~~~~~~~~~~~~~~~~P-~NPTG~~~-s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~  208 (388)
T PRK08637        132 -TDALKEALQAAYNKGKVIVILNFP-NNPTGYTP-TEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFA  208 (388)
T ss_pred             -HHHHHHHHHhhccCCCEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHH
Confidence             5667666651 1122333333445 66666554 78889999999886     99999999999988655521101 11


Q ss_pred             c-cCCCCCE--E---Eeecccc-CCcccccccc------CHHHHHhhcCCc----ccccCCCChHHHHHHHHHHHHHhhh
Q 013235          312 A-HGVVPDI--V---TMAKGIG-NGIPLGAVVT------TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKD  374 (447)
Q Consensus       312 ~-~gv~pDi--v---t~sK~lg-~G~pigav~~------~~~i~~~l~~~~----~~~T~~~np~a~aaala~L~~i~~~  374 (447)
                      . .+..+.+  +   ++||.++ .|+|+||++.      ++++++.+....    ....++.|.++++++.+.|+   +.
T Consensus       209 ~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~---~~  285 (388)
T PRK08637        209 ALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALN---SP  285 (388)
T ss_pred             HhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhC---CH
Confidence            1 1223342  2   5899876 6999999984      367777665311    11334678888888877773   44


Q ss_pred             hHHHHHHHHHHHHHHHHH---HHHHhcC---CeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceee
Q 013235          375 KLQNNAHVVGSYLKERLT---ALKDKYG---IIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFF  444 (447)
Q Consensus       375 ~l~~~~~~~g~~l~~~L~---~l~~~~~---~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~  444 (447)
                      .+.+++++....++++..   +..++++   .+.-. ...|+++++++..         ....++++.|+ ++||.+.
T Consensus       286 ~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~l~~~l~~~~gv~~~  354 (388)
T PRK08637        286 EFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG---------VDAEELRVHLLEKYGIGTI  354 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh---------HHHHHHHHHHhhhcceEEE
Confidence            555555555444544432   2232331   12222 3457888888731         12467888886 5798764

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.60  E-value=6.4e-13  Score=136.39  Aligned_cols=302  Identities=12%  Similarity=0.051  Sum_probs=166.0

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHH-hcc--ccccccc--chHHHHH----HHHHHHhCCCCCceEEEcCCHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQ--HSTVLYL--NHAIADF----AEALASKMPGNLKVVFFTNSGTE  169 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~--~~~~~~~--~~~~~el----ae~L~~~~~~~~~~v~~~~sGse  169 (447)
                      +.+|++.++.+.     -+|+|.+|+.+.+. ...  .....+.  .+...++    .+.+++.++.....| +.+||++
T Consensus        25 ~~~~~l~~~~n~-----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i-~~~sgt~   98 (416)
T PRK00011         25 EEHIELIASENF-----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANV-QPHSGSQ   98 (416)
T ss_pred             hcCeeeecccCc-----CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceee-ecCCchH
Confidence            456787776653     47999999876642 221  1111111  1223333    336777776554444 4467999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..+++..  ..+++.|++...+|.+.........        ....+...+..|... ..+..|    .+++++.+..
T Consensus        99 al~~~l~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~-~~~~~d----~~~l~~~i~~  163 (416)
T PRK00011         99 ANAAVYFAL--LKPGDTILGMDLAHGGHLTHGSPVN--------FSGKLYNVVSYGVDE-ETGLID----YDEVEKLALE  163 (416)
T ss_pred             HHHHHHHHh--cCCCCEEEEeccccCCccccccccc--------cccceeeEeecCcCc-ccCCcC----HHHHHHHHHh
Confidence            999988755  2356788988888754321110000        000122222222110 012234    5677777753


Q ss_pred             cCCCCeEEEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eeeccc
Q 013235          250 GTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGI  326 (447)
Q Consensus       250 ~~~~~~aavi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~l  326 (447)
                      .   ++.++++ .++.   |...+    +++|.++|+++|+++|+||+|. +|..+.... ....+ ..|++  +++|++
T Consensus       164 ~---~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~-~~~~~-~~di~~~S~~K~l  230 (416)
T PRK00011        164 H---KPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVH-PSPVP-HADVVTTTTHKTL  230 (416)
T ss_pred             c---CCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCcc-CCCCC-CCcEEEecCCcCC
Confidence            2   3344555 4443   33333    8999999999999999999985 332220000 01122 35777  477998


Q ss_pred             cCCccccccccC-HHHHHhhcCCcccccCCCC-hHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          327 GNGIPLGAVVTT-PEIAEVLTRRNYFNTFGGN-PVCTAAG-HAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       327 g~G~pigav~~~-~~i~~~l~~~~~~~T~~~n-p~a~aaa-la~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                       +|.+.|+++++ +++++.+.......+++.. ...+++. .+.++.+++  +++.++.+++.+++++.|+++  .+.+.
T Consensus       231 -~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  307 (416)
T PRK00011        231 -RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER--GFRVV  307 (416)
T ss_pred             -CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeee
Confidence             46778899985 6888877543222223222 2233332 333343332  346777888888888888774  22221


Q ss_pred             eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      . -.....++.+.+.+..       ....++.+.|.++||.+..
T Consensus       308 ~-~~~~~~~~~i~~~~~~-------~~~~~~~~~L~~~GI~v~~  343 (416)
T PRK00011        308 S-GGTDNHLVLVDLRSKG-------LTGKEAEAALEEANITVNK  343 (416)
T ss_pred             e-cCCCCeEEEEeCcccC-------CCHHHHHHHHHHcCcEEcc
Confidence            1 0123466666663211       0134678888899999873

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.60  E-value=7.4e-14  Score=145.46  Aligned_cols=157  Identities=15%  Similarity=0.170  Sum_probs=102.4

Q ss_pred             ceEEEcCCHHHHHHHHHHHHH---hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCC
Q 013235          159 KVVFFTNSGTEANELAIMMAR---LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar---~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (447)
                      ++|+.++++++|+..++....   ...++++|++.+++|......+....           .++..++.+......|..|
T Consensus       162 ~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g-----------~~~~~v~v~~~~~~~f~~d  230 (527)
T PRK09275        162 FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPR-----------YDLEVVHINADEENEWQYP  230 (527)
T ss_pred             CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcC-----------CCeEEEEeecCcccCCCCC
Confidence            479999999999999987421   23467899999999987654432221           1333343332212234444


Q ss_pred             hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCccccccc
Q 013235          236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAH  313 (447)
Q Consensus       236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~  313 (447)
                          .+++++++.   ++.-+.+|+.|. +++|.+. +++.+++|.++|++  +++++|.||||..|.. .  +...  .
T Consensus       231 ----~~~l~~~~~---~~tkai~l~nP~-NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~--~~s~--~  296 (527)
T PRK09275        231 ----DSELEKLRD---PSIKALFLVNPS-NPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFVD-D--FRSL--F  296 (527)
T ss_pred             ----HHHHHhhcC---CCCCEEEEeCCc-CCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhcc-c--ccCH--H
Confidence                456666543   323345556775 5556544 78999999999965  4999999999988742 1  1111  1


Q ss_pred             CCCCC-EE---Eeecccc-CCccccccccCHH
Q 013235          314 GVVPD-IV---TMAKGIG-NGIPLGAVVTTPE  340 (447)
Q Consensus       314 gv~pD-iv---t~sK~lg-~G~pigav~~~~~  340 (447)
                      ...|+ ++   +|||.++ .|+++|+++++++
T Consensus       297 ~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~  328 (527)
T PRK09275        297 AVLPYNTILVYSFSKYFGATGWRLGVIALHED  328 (527)
T ss_pred             HhCCCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence            11232 22   6899998 7999999999886

>PRK07049 methionine gamma-lyase; Validated

Probab=99.59  E-value=1.5e-13  Score=141.19  Aligned_cols=241  Identities=15%  Similarity=0.091  Sum_probs=154.6

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|.++...+|+++|+++...  +.+++++||++|+..++....  ..++.|++.++.|.+.........         .
T Consensus        78 ~R~~~Pt~~~Le~~lA~leg~--~~~iv~~sG~~Ai~~~l~al~--~~Gd~Vv~~~p~Y~~~~~~~~~~l---------~  144 (427)
T PRK07049         78 SRFNHPNSEIVEDRLAVYEGA--ESAALFSSGMSAIATTLLAFV--RPGDVILHSQPLYGGTETLLAKTF---------R  144 (427)
T ss_pred             cCCCCcCHHHHHHHHHHHhCC--CcEEEEccHHHHHHHHHHHHh--CCCCEEEEcCCCcccHHHHHHHHH---------H
Confidence            567888889999999999853  457889999999988886443  256789999999987654321110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH------hC
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------AG  288 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~------~g  288 (447)
                      ..|+..+.+++.      .|    .+++++.+... ...++.+|++|..++++|.+.+    +++|.+++++      ++
T Consensus       145 ~~Gi~~v~~~~~------~d----~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~~  210 (427)
T PRK07049        145 NFGVGAVGFADG------LS----EAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGHR  210 (427)
T ss_pred             hcCcEEEEEeCC------CC----HHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccCC
Confidence            113433333321      23    34455544321 1236788999988888888875    6666666666      89


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEE--Eeecccc--CCccccccccCHHHHHhhcCCcccccCCCChHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG--NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAG  364 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg--~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaa  364 (447)
                      +++|+||++.++....    ..+ ++  .||+  +++|.++  +|+++|++++++++++.+.........+.+|..+.++
T Consensus       211 ~~vvvDety~~~~~~~----pl~-~g--~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~  283 (427)
T PRK07049        211 PIIACDNTLLGPVFQK----PLE-HG--ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWML  283 (427)
T ss_pred             CEEEEECCccccccCC----ccc-cC--CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            9999999976542111    111 23  4777  5899999  4799999999999888776422222334678888887


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee--------------------EeecceeEEEEEe
Q 013235          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD--------------------VRGRGFLLGVEFV  416 (447)
Q Consensus       365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--------------------vrg~Gl~~giel~  416 (447)
                      +..|+.+..  .+++..+....+.+.|++    ++.+..                    ..|.|-|+.|++.
T Consensus       284 ~r~L~tl~~--R~~~~~~~a~~la~~L~~----~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~  349 (427)
T PRK07049        284 GRSLETLVL--RMERANRNARAVAEFLRD----HPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIK  349 (427)
T ss_pred             HcCCChHHH--HHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEc
Confidence            777764421  233334445555555543    332222                    2366889999995

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.59  E-value=3.3e-13  Score=135.49  Aligned_cols=250  Identities=14%  Similarity=0.144  Sum_probs=151.8

Q ss_pred             CCCCCHHHHHHHHHHHHhccccccc----c---cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh---c
Q 013235          113 CGHCHPYVVDSIVNQIKRIQHSTVL----Y---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---T  182 (447)
Q Consensus       113 lGh~~p~v~~A~~~~l~~~~~~~~~----~---~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~---t  182 (447)
                      .|..++.|.+|+.+.+.........    +   ..+...+++++|++++..+.+.|+|++|+++|++.+++.....   .
T Consensus         7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~   86 (353)
T TIGR03235         7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQK   86 (353)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccC
Confidence            3456899999998887542111111    0   1234578889999998766678999999999999999765432   2


Q ss_pred             CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc
Q 013235          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (447)
Q Consensus       183 ~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep  262 (447)
                      +++.|++. ...|...........         ..|+.....|...  .+..|    .+++++.+.   + ++.+|+++.
T Consensus        87 g~~~vi~~-~~~~~s~~~~~~~~~---------~~G~~v~~v~~~~--~~~~d----~~~l~~~l~---~-~~~lv~~~~  146 (353)
T TIGR03235        87 GKKHIITS-AIEHPAVLEPIRALE---------RNGFTVTYLPVDE--SGRID----VDELADAIR---P-DTLLVSIMH  146 (353)
T ss_pred             CCCeeeEc-ccccHHHHHHHHHHH---------hcCCEEEEEccCC--CCcCC----HHHHHHhCC---C-CCEEEEEEc
Confidence            22445544 444443322221110         0133222222211  11123    566776664   2 567888888


Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHH
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPE  340 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~  340 (447)
                      +++++|.+.+    +++|.++|+++|+++|+|++|. +|..   .  ++.....+|+++++  |.+|. ..+|+++.+++
T Consensus       147 ~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~---~--~~~~~~~~D~~~~s~~K~~gp-~g~g~l~~~~~  215 (353)
T TIGR03235       147 VNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI---T--VDLSADRIDLISCSGHKIYGP-KGIGALVIRKR  215 (353)
T ss_pred             ccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc---c--ccccccCCCEEEeehhhcCCC-CceEEEEEccC
Confidence            8889999987    8999999999999999999996 4422   1  12222347999888  96431 23688888877


Q ss_pred             HHHh--hcCCcc-------cccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Q 013235          341 IAEV--LTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       341 i~~~--l~~~~~-------~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~  393 (447)
                      ..+.  +.....       ......|+...++..++|+.+.+  ++..++.+++.++++++|++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~  279 (353)
T TIGR03235       216 GKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT  279 (353)
T ss_pred             cccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence            4322  111000       11223455556666677777643  34567777777777777755

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.58  E-value=7.5e-13  Score=135.18  Aligned_cols=302  Identities=16%  Similarity=0.085  Sum_probs=165.2

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHH-Hhcc--cccc-ccc-chH---HHH-HHHHHHHhCCCCCceEEEcCCHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQ--HSTV-LYL-NHA---IAD-FAEALASKMPGNLKVVFFTNSGTE  169 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l-~~~~--~~~~-~~~-~~~---~~e-lae~L~~~~~~~~~~v~~~~sGse  169 (447)
                      +++|.+..+-..     -+|+|.+|+.+.+ .++.  +... .|. .+.   ..+ .++.+++.++.+...+ +.+||++
T Consensus        19 ~~~~~~~~~~~~-----~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v-~~~sgt~   92 (402)
T cd00378          19 RETLELIASENF-----TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANV-QPHSGSQ   92 (402)
T ss_pred             HhCeeeeccCCc-----CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceee-ecCCcHH
Confidence            567887766552     3799999998765 3331  1111 121 222   233 2334566776543334 4467999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe--EeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~--~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      |+..+++...  ..+++|++..+.|.+....... ..       ....|.  ..++.+... ..+..|    .+++++.+
T Consensus        93 a~~~~l~~l~--~~Gd~Vl~~~~~~~~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~-~~~~id----~~~l~~~i  157 (402)
T cd00378          93 ANLAVYFALL--EPGDTIMGLDLSHGGHLTHGSF-TK-------VSASGKLFESVPYGVDP-ETGLID----YDALEKMA  157 (402)
T ss_pred             HHHHHHHHhc--CCCCEEEEecCccCcccccccc-cc-------ccccceeEEEecCCcCc-ccCCcC----HHHHHHHH
Confidence            9999988653  3567899988888554321100 00       000122  222221100 012234    56777777


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCccccCCCcccccccCCCCCEE--Eeec
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMAK  324 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGfgr~G~~~~~~~~~gv~pDiv--t~sK  324 (447)
                      ...  +....++..|..+   ...+    +++|.++|++||+++|+||+| .|+...|. ..  .... ..|++  +++|
T Consensus       158 ~~~--~~~~v~~~~~~~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~-~~--~~~~-~~dv~~~s~sK  224 (402)
T cd00378         158 LEF--KPKLIVAGASAYP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGV-FP--NPLP-GADVVTTTTHK  224 (402)
T ss_pred             HhC--CCCEEEecCcccC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhccc-CC--Cccc-CCcEEEecccc
Confidence            532  1223444466443   3323    899999999999999999996 44422331 11  1111 35776  5789


Q ss_pred             cccCCccccccccCH-HHHHhhcCCcccccCCCC-hHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          325 GIGNGIPLGAVVTTP-EIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       325 ~lg~G~pigav~~~~-~i~~~l~~~~~~~T~~~n-p~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      .+ +|.+.|++++++ ++++.+........++.. +...+++..++..+.+   +++.+++.++.+++.+.|.++  .+.
T Consensus       225 ~l-~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  301 (402)
T cd00378         225 TL-RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER--GFK  301 (402)
T ss_pred             CC-CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence            99 667889999877 888777543222223322 2233332333443322   345666777777777777664  222


Q ss_pred             CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       400 ~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ... -...+.++++.+.+...       ...++.+.|.++||++..
T Consensus       302 ~~~-~~~~~~~v~v~~~~~~~-------~~~~~~~~l~~~gI~v~~  339 (402)
T cd00378         302 VVS-GGTDNHLVLVDLRPKGI-------TGKAAEDALEEAGITVNK  339 (402)
T ss_pred             Eee-cCCCCeEEEEeCCccCC-------CHHHHHHHHHHcCcEEcC
Confidence            221 11347777787742210       123566678889999963

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PLN02242 methionine gamma-lyase

Probab=99.58  E-value=1.6e-13  Score=140.46  Aligned_cols=255  Identities=16%  Similarity=0.147  Sum_probs=158.5

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++..  .+.+++++||++|+..++....  ..++.|++..+.|.+... .+....       ..
T Consensus        71 ~r~~~Pt~~~LE~~lA~l~g--~~~~l~~~sG~~Ai~~al~al~--~~GD~Vl~~~~~Y~~~~~-~~~~~~-------~~  138 (418)
T PLN02242         71 SRHFNPTVLNLGRQMAALEG--TEAAYCTASGMSAISSVLLQLC--SSGGHVVASNTLYGGTHA-LLAHFL-------PR  138 (418)
T ss_pred             cCCCChhHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHh--CCCCEEEEcCCcHHHHHH-HHHHhh-------hh
Confidence            44568899999999999984  4567889999999999997543  256788888887743322 111000       00


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.   ++++.+|++|..++++|.+.+    +++|.++|+++|+++|+||
T Consensus       139 ~~G~~~~~~d~-------~d----~e~l~~~i~---~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDe  200 (418)
T PLN02242        139 KCNITTTFVDI-------TD----LEAVKKAVV---PGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDN  200 (418)
T ss_pred             ccCceEEEcCC-------CC----HHHHHHhcC---cCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEEC
Confidence            01222221111       12    566776664   224778999988888888875    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEE--EeeccccC-Ccc-ccccccCHHHHHhhcCCccc--ccCCCChHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIP-LGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~p-igav~~~~~i~~~l~~~~~~--~T~~~np~a~aaala~L~  369 (447)
                      +|+.+. .+     ...+|  .||+  +++|.+++ |.+ .|++++++++++.+......  ..++..+....+++..+.
T Consensus       201 a~~~~~-~~-----~~~~g--~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~  272 (418)
T PLN02242        201 TFAPMV-LS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSER  272 (418)
T ss_pred             CCCccC-CC-----HHHcC--CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC
Confidence            996442 22     11233  4666  58899985 666 58899999988877643221  223333444444444332


Q ss_pred             HHhh-hhHHHHHHHHHHHHHHHHHHHHHh--cCCe----------eeE---eecceeEEEEEeeCCCCCCCCHHHHHHHH
Q 013235          370 VIQK-DKLQNNAHVVGSYLKERLTALKDK--YGII----------GDV---RGRGFLLGVEFVTDRQLKTPAKAETLYIM  433 (447)
Q Consensus       370 ~i~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~i----------~~v---rg~Gl~~giel~~~~~~~~p~~~~~~~~~  433 (447)
                       ++. +..+++.+++..++.+.|++...+  ||..          ...   .|.|-|+.|++..        .+.+.+|+
T Consensus       273 -l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~--------~~~~~~f~  343 (418)
T PLN02242        273 -LPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT--------EERANRLM  343 (418)
T ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC--------HHHHHHHH
Confidence             111 223455666777777777765211  1110          012   3778999999941        13355666


Q ss_pred             HHHH
Q 013235          434 DKMK  437 (447)
Q Consensus       434 ~~l~  437 (447)
                      +.+.
T Consensus       344 ~~l~  347 (418)
T PLN02242        344 RYLQ  347 (418)
T ss_pred             HHhh
Confidence            6654

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.58  E-value=1.1e-12  Score=132.47  Aligned_cols=285  Identities=14%  Similarity=0.075  Sum_probs=167.6

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC--ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~  193 (447)
                      ..|.+.+|+.+..   .|....|. ....++.++|++++....  +.+++++||+++++.++....  ..++++++...+
T Consensus        16 ~~~~~~~a~~~~~---~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--~~~~~vlv~~~~   89 (368)
T PRK13479         16 TSRTVREAMLRDW---GSWDDDFN-ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--PRDGKVLVPDNG   89 (368)
T ss_pred             CCHHHHHHhCCCC---CCCChHHH-HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--CCCCeEEEEeCC
Confidence            5677777766543   22222233 467889999999887542  568899999999999997553  255678777777


Q ss_pred             cccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeC
Q 013235          194 YHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (447)
Q Consensus       194 yHG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~  272 (447)
                      |+|... ......+          ..+..++.+..    +..|    .+++++.+... + ++..+.+-.+.+.+|.+.+
T Consensus        90 ~~~~~~~~~~~~~g----------~~~~~i~~~~~----~~~d----~~~l~~~l~~~-~-~~~~v~~~~~~~~tG~~~~  149 (368)
T PRK13479         90 AYGARIAQIAEYLG----------IAHVVLDTGED----EPPD----AAEVEAALAAD-P-RITHVALVHCETTTGILNP  149 (368)
T ss_pred             chHHHHHHHHHHcC----------CcEEEEECCCC----CCCC----HHHHHHHHHhC-C-CCcEEEEEcccCccccccC
Confidence            766531 1111111          12333332211    1133    56677776532 2 3444444445566777776


Q ss_pred             CCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCccccccccCHHHHHhhcCCcc
Q 013235          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRRNY  350 (447)
Q Consensus       273 ~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav~~~~~i~~~l~~~~~  350 (447)
                          +++|.++|+++|+++|+|.+| .||...   ....  ...+|+++  +.|.+.+...+|++++++++++.+.....
T Consensus       150 ----~~~i~~l~~~~~~~livDa~~-~~g~~~---~~~~--~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~  219 (368)
T PRK13479        150 ----LDEIAAVAKRHGKRLIVDAMS-SFGAIP---IDIA--ELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSR  219 (368)
T ss_pred             ----HHHHHHHHHHcCCEEEEEccc-ccCCcc---cccc--ccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCC
Confidence                899999999999999999877 465321   1222  23468775  56988654446999999998877654211


Q ss_pred             -----------------cccCCCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHhcCCeee--Eeec
Q 013235          351 -----------------FNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGD--VRGR  407 (447)
Q Consensus       351 -----------------~~T~~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrg~  407 (447)
                                       ...|+.|....++..++|+.+.++    +..+++.+..+++++.|+++  .+..+..  .+. 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~-  296 (368)
T PRK13479        220 SLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL--GFEPLLDAEIQS-  296 (368)
T ss_pred             CeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCcccCCchhcC-
Confidence                             111345656666667778776443    33455566666666666554  2221111  111 


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .....+.+...+    +  ....++.+.|.++||++.+
T Consensus       297 ~~~~~~~~~~~~----~--~~~~~l~~~L~~~gi~v~~  328 (368)
T PRK13479        297 PIIVTFHAPADP----A--YDFKEFYERLKEQGFVIYP  328 (368)
T ss_pred             ceEEEEECCCCC----C--cCHHHHHHHHHHCCEEEec
Confidence            122233221110    0  1135788999999999964

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=4.6e-14  Score=136.17  Aligned_cols=316  Identities=16%  Similarity=0.085  Sum_probs=205.5

Q ss_pred             EEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCCCCCc
Q 013235           85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        85 ~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      +....+.++ ..||+.+++|.+..... |+ .++++.+.+...+++++.++.     .+..+.+.+|.+.|++.++  .+
T Consensus        81 ~e~~~~~~~-~i~G~~~~N~aS~NfL~-l~-~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G--~E  155 (467)
T KOG1358|consen   81 LESVMLPHV-TIDGKDVLNFASANFLG-LI-ENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG--TE  155 (467)
T ss_pred             cccccCCce-EecCceeecccchhhhh-hc-ccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC--Cc
Confidence            444444454 48999999998765533 33 478999999999999865432     3346778899999999995  44


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHH
Q 013235          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (447)
                      ..++.+-|..+++.++.   ++.++.+|+..+-.-+-...-.+.++......|.+                   +|    
T Consensus       156 ~aivYs~gF~ti~S~ip---afsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------------------nd----  209 (467)
T KOG1358|consen  156 DAIVYSYGFSTIESAIP---AFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------------------ND----  209 (467)
T ss_pred             ceeeeccccchhhhcch---hhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-------------------CC----
Confidence            55677888899998887   56688899988877765555555555443322221                   34    


Q ss_pred             HHHHHHHHHc------cCCC---CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC-ccc
Q 013235          240 AKDVQDLIDF------GTSG---HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWG  309 (447)
Q Consensus       240 ~~~le~~i~~------~~~~---~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~-~~~  309 (447)
                      ++++|+++.+      ..++   ....+++|.+.-+.|.+.|    +.+|.++..||...+|+||..+ ||-.|+. ...
T Consensus       210 m~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGv  284 (467)
T KOG1358|consen  210 MEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGV  284 (467)
T ss_pred             HHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccc
Confidence            4455544422      1122   2568899999999999998    9999999999999999999976 5444421 223


Q ss_pred             ccccCCC---CCEEE--eeccccC-CccccccccCHHHHHhhcCCcccccC--CCChHHHHHHHHHHHHHhhh-hHHHHH
Q 013235          310 FEAHGVV---PDIVT--MAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTF--GGNPVCTAAGHAVLKVIQKD-KLQNNA  380 (447)
Q Consensus       310 ~~~~gv~---pDivt--~sK~lg~-G~pigav~~~~~i~~~l~~~~~~~T~--~~np~a~aaala~L~~i~~~-~l~~~~  380 (447)
                      .+|+++.   .|+++  |.-+++. |   |.++++.-+++.-.-...++-|  +..|....+|..++++++++ +..+.+
T Consensus       285 teH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L  361 (467)
T KOG1358|consen  285 TEHFGVPITDIDIVTASMETALASGG---GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPL  361 (467)
T ss_pred             cccCCCCccceeeeeecccccccccC---ceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhh
Confidence            4888884   46776  4455552 2   3466655554432212223334  45688888899999988653 556666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeEeec--ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDVRGR--GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~--Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.....+...|... ..    ..+.|.  ..++.+.+.....++..+....+++++.|+.+|+++.
T Consensus       362 ~~k~~~~H~~l~~~-s~----~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~  422 (467)
T KOG1358|consen  362 RAKVAKFHAALSSN-SG----FIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLT  422 (467)
T ss_pred             hccccccchhhhcC-Cc----eEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceeh
Confidence            66666666666552 11    123332  4455566654333332333356789999988898875

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.57  E-value=1.6e-12  Score=133.86  Aligned_cols=302  Identities=15%  Similarity=0.103  Sum_probs=177.8

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc---cccccc----chHHHHHHHHHHHhCCCC-CceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH---STVLYL----NHAIADFAEALASKMPGN-LKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~---~~~~~~----~~~~~elae~L~~~~~~~-~~~v~~~~sGse  169 (447)
                      +..|||..+      .|-.++.|.+++.+.+.....   ....+.    .....++.+.|++++... .++|+|++++++
T Consensus        32 ~~iyLd~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  105 (424)
T PLN02855         32 KLVYLDNAA------TSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE  105 (424)
T ss_pred             CeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence            347888632      244567899998887755421   111111    233568888999998764 468999999999


Q ss_pred             HHHHHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          170 ANELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++..+++...  ...+++.|++....|++.......+..         ..|+.....|....  ...|    .+++++.+
T Consensus       106 al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~---------~~g~~v~~v~~~~~--~~~~----~~~l~~~i  170 (424)
T PLN02855        106 AINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQ---------KTGAVLKFVGLTPD--EVLD----VEQLKELL  170 (424)
T ss_pred             HHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHH---------HcCCEEEEEecCCC--CCcC----HHHHHHHh
Confidence            9999887421  234557888888777654322111100         01222222111110  1123    56677666


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eecc
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKG  325 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~  325 (447)
                      ..    ++.+|++.-+++.+|.+.+    +++|.++|+++|+++|+|++|. +|...     ++.....+|+++  +.|.
T Consensus       171 ~~----~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~~-----~~~~~~~~d~~~~s~~K~  236 (424)
T PLN02855        171 SE----KTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHMP-----VDVQTLGADFLVASSHKM  236 (424)
T ss_pred             cc----CceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCcC-----CCchhcCCCEEEeecccc
Confidence            42    5677888888888999887    8999999999999999999994 44221     122223468885  5694


Q ss_pred             ccCCccccccccCHHHHHhhcCCccc--------------------ccCC-CChHHHHHHHHHHHHHhhh---hHHHHHH
Q 013235          326 IGNGIPLGAVVTTPEIAEVLTRRNYF--------------------NTFG-GNPVCTAAGHAVLKVIQKD---KLQNNAH  381 (447)
Q Consensus       326 lg~G~pigav~~~~~i~~~l~~~~~~--------------------~T~~-~np~a~aaala~L~~i~~~---~l~~~~~  381 (447)
                      +| .-.+|++++++++++.+.....+                    ...+ .|..+.++..++|+.+.+.   +..++.+
T Consensus       237 ~g-p~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~  315 (424)
T PLN02855        237 CG-PTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEV  315 (424)
T ss_pred             cC-CCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            43 22479999999887766431000                    0111 2344555555677776553   3456666


Q ss_pred             HHHHHHHHHHHHHHHhcCCeee----EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          382 VVGSYLKERLTALKDKYGIIGD----VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~----vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      ++.+++++.|+++. ...+.+.    ...++.++.+.+...         ...++.+.|.++ ||.++.
T Consensus       316 ~l~~~l~~~L~~~~-g~~i~~~~~~~~~~r~~~v~~~~~~~---------~~~~v~~~L~~~~gI~v~~  374 (424)
T PLN02855        316 ELGTYLYEKLSSVP-GVRIYGPKPSEGVGRAALCAFNVEGI---------HPTDLSTFLDQQHGVAIRS  374 (424)
T ss_pred             HHHHHHHHHHhcCC-CEEEeCCCcccccCcccEEEEEECCc---------CHHHHHHHhcccCCEEEec
Confidence            66777766665531 1111211    112345666665211         134688888887 998764

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.56  E-value=2.4e-13  Score=141.44  Aligned_cols=202  Identities=12%  Similarity=0.100  Sum_probs=117.8

Q ss_pred             CCCCHHHHHHHHHHHHhcccccccccchHHHHHHH-HHHHhCC---CCCc--eEEEcCCHHHHHHHHHHHHH---hhcCC
Q 013235          114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAE-ALASKMP---GNLK--VVFFTNSGTEANELAIMMAR---LYTGC  184 (447)
Q Consensus       114 Gh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae-~L~~~~~---~~~~--~v~~~~sGseA~e~Aik~ar---~~t~~  184 (447)
                      |...|+++.++.+.+....+.......+...++++ .+.+.+.   ...+  +|++++++++|+..++....   ...++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pG  184 (521)
T TIGR03801       105 GFDPDAFLYEMCDGIIGDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKG  184 (521)
T ss_pred             CCCCCHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCC
Confidence            34556777777776532222111111223333332 2233222   1222  79999999999999887421   23467


Q ss_pred             CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC-----CCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV-----FGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~-----~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                      ++|++..++|......+....           .++..++.+......     |..|    .+++++++.   ++..+.+|
T Consensus       185 D~Vlv~~P~y~~y~~~~~l~~-----------~g~~vv~i~~~~~~~~g~~~~~~d----~~~l~~~~~---~~~kai~l  246 (521)
T TIGR03801       185 DKIALMTPIFTPYLEIPELPR-----------YDFEVVRIKADEMTEDGTHTWQYP----DKELEKLRD---PSIKALFV  246 (521)
T ss_pred             CEEEEeCCCcHHHHHHHHHhc-----------CCcEEEEeecccccccccccCCCC----HHHHHHhcC---CCCcEEEE
Confidence            899999999976554322111           123333222211111     4444    455665543   32334555


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCC-EE---Eeecccc-CCccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPD-IV---TMAKGIG-NGIPL  332 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD-iv---t~sK~lg-~G~pi  332 (447)
                      +.|. +++|.+ .+++.+++|.++|++|  ++++|.||||..|..   .+-..  ....|| ++   +|||.++ .|+++
T Consensus       247 ~nP~-NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl--~~~~~~~vI~v~SfSK~fg~~G~Rl  319 (521)
T TIGR03801       247 VNPS-NPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSL--FAELPYNTIGVYSFSKYFGATGWRL  319 (521)
T ss_pred             eCCC-CCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccch--hhhCCCCEEEEEcchhhccCchhhh
Confidence            7776 455554 4788999999999987  999999999987742   11111  112343 33   5999998 79999


Q ss_pred             cccccCHH
Q 013235          333 GAVVTTPE  340 (447)
Q Consensus       333 gav~~~~~  340 (447)
                      |+++++++
T Consensus       320 G~i~~~~~  327 (521)
T TIGR03801       320 GTIALHKD  327 (521)
T ss_pred             hhhhcCch
Confidence            99999864

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.56  E-value=5.9e-13  Score=136.01  Aligned_cols=289  Identities=13%  Similarity=0.080  Sum_probs=173.7

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      -+++|.+|+.+.+  ..|... .....+.+++++|++++..+. +.+++++||+++++.++...  ..++++|++.+.+|
T Consensus        20 ~~~~V~~a~~~~~--~~~~~~-~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~--~~~Gd~Vlv~~~~~   94 (401)
T PLN02409         20 IPERVLRAMNRPN--EDHRSP-AFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT--LSPGDKVVSFRIGQ   94 (401)
T ss_pred             CCHHHHHHhcCCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc--CCCCCEEEEeCCCc
Confidence            4577777765432  123221 224566778888888876543 57899999999999998643  34668899999887


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~  274 (447)
                      ++.....+ +..     .   ...+..++.+.  ...  .|    .+++++.+......++.+|++..+.+.+|.+.+  
T Consensus        95 ~~~~~~~~-~~~-----~---g~~v~~v~~~~--~~~--~~----~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~--  155 (401)
T PLN02409         95 FSLLWIDQ-MQR-----L---NFDVDVVESPW--GQG--AD----LDILKSKLRQDTNHKIKAVCVVHNETSTGVTND--  155 (401)
T ss_pred             hhHHHHHH-HHH-----c---CCceEEEECCC--CCC--CC----HHHHHHHHhhCcCCCccEEEEEeecccccccCC--
Confidence            65432111 000     0   01223333221  111  12    567777776421125677777777778888887  


Q ss_pred             ChHHHHHHH--HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcCCc-
Q 013235          275 GYLPAVYKS--IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTRRN-  349 (447)
Q Consensus       275 ~~l~~l~~l--~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~~~-  349 (447)
                        +++|.++  |+++|+++|+|++|+ +|.   .-...+.+  ..|+++.  .|.+++...+|+++.+++.++.+.... 
T Consensus       156 --~~~i~~l~~~~~~g~~~vvD~v~s-~g~---~~id~~~~--~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~  227 (401)
T PLN02409        156 --LAGVRKLLDCAQHPALLLVDGVSS-IGA---LDFRMDEW--GVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKS  227 (401)
T ss_pred             --HHHHHHHHhhhccCcEEEEEcccc-cCC---cccccccc--CccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCC
Confidence              8999999  999999999999996 431   11112223  4577754  599986556899999999887765311 


Q ss_pred             ---c-----------cc---cCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-ee-c
Q 013235          350 ---Y-----------FN---TFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDV-RG-R  407 (447)
Q Consensus       350 ---~-----------~~---T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg-~  407 (447)
                         .           ..   .+..|.....+..++|+.+.+.   +..++.+++.+++++.|+++  .+.++..- .. .
T Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~--g~~~~~~~~~~~s  305 (401)
T PLN02409        228 PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW--GLKLCTKKPEWRS  305 (401)
T ss_pred             CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcc
Confidence               0           01   2233445566777888887653   45677777888888877665  23333211 11 1


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      +.+..+.+.+.        ....++.+.|+ +.||.+..+
T Consensus       306 ~~v~~~~~p~~--------~~~~~l~~~l~~~~~i~i~~G  337 (401)
T PLN02409        306 DTVTAVVVPEG--------IDSAEIVKNAWKKYNLSLGLG  337 (401)
T ss_pred             cceEEEeCCCC--------CCHHHHHHHHHHhCCEEEEcC
Confidence            23344443211        11345766665 569888743

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.56  E-value=2e-12  Score=130.74  Aligned_cols=291  Identities=17%  Similarity=0.201  Sum_probs=188.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcccc---c-c---cccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHh-hcC
Q 013235          113 CGHCHPYVVDSIVNQIKRIQHS---T-V---LYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARL-YTG  183 (447)
Q Consensus       113 lGh~~p~v~~A~~~~l~~~~~~---~-~---~~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~-~t~  183 (447)
                      .|..++.|.+++.+.+......   . .   ....+...+..+.|++.++.+. +.|+|++|++++++.++...+. ..+
T Consensus         8 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~   87 (371)
T PF00266_consen    8 TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKP   87 (371)
T ss_dssp             S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTT
T ss_pred             ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccccc
Confidence            3557899999999987754211   1 1   1124556788889999988776 7899999999999999987743 457


Q ss_pred             CCeEEEEcCCcccCchhhhhccCCCCccccccCCC--eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc
Q 013235          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG--VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE  261 (447)
Q Consensus       184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g--~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E  261 (447)
                      +++|++....|++..........         ..|  +..++.+  ..+.  .|    .+++++.+.    .++..|++.
T Consensus        88 g~~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~i~~~--~~~~--~~----~~~~~~~l~----~~~~lv~~~  146 (371)
T PF00266_consen   88 GDEVLVTSNEHPSNRYPWEEIAK---------RKGAEVRVIPAD--PGGS--LD----LEDLEEALN----PDTRLVSIS  146 (371)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHH---------HTTEEEEEEEEG--TTSS--CS----HHHHHHHHH----TTESEEEEE
T ss_pred             ccccccccccccccccccccccc---------cchhhhcccccc--ccch--hh----hhhhhhhhc----cccceEEee
Confidence            78999999998876632222210         012  2223221  1111  13    567777775    377888888


Q ss_pred             cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCH
Q 013235          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP  339 (447)
Q Consensus       262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~  339 (447)
                      -+.+..|...|    +++|.++|+++|+++|+|=+|+ +|..-     ++.....+|++++|  | ++|+.-+|.+..++
T Consensus       147 ~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~~-----id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~  215 (371)
T PF00266_consen  147 HVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCVP-----IDLDELGADFLVFSSHK-LGGPPGLGFLYVRP  215 (371)
T ss_dssp             SBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTSS-------TTTTTESEEEEESTS-TTSSSTEEEEEEEH
T ss_pred             cccccccEEee----eceehhhhhccCCceeEechhc-ccccc-----ccccccccceeeecccc-cCCCCchhhheehh
Confidence            89889999888    9999999999999999999996 54321     23333457999877  9 88766689999999


Q ss_pred             HHHHhhcCCcccc------------------cC---CCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHH
Q 013235          340 EIAEVLTRRNYFN------------------TF---GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       340 ~i~~~l~~~~~~~------------------T~---~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      +..+.+.+.....                  -|   .-|.....+..++|+.+++.   +..++..++.+++++.|.++.
T Consensus       216 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~  295 (371)
T PF00266_consen  216 EAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELP  295 (371)
T ss_dssp             HHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCC
Confidence            9988884321110                  11   13455555666788877543   345666677777777776652


Q ss_pred             HhcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          396 DKYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       396 ~~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      . ...++  +-.-.+.++.+.+...         ....+.+.|.++||.++.
T Consensus       296 ~-~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~L~~~~I~~~~  337 (371)
T PF00266_consen  296 G-IEVLGPDDEPRRPSIVSFNLPGS---------DADDVVKYLEERGIAVST  337 (371)
T ss_dssp             T-EEESSSSCGGBGTTEEEEEETTS---------SHHHHHHHHHHHTEEEEE
T ss_pred             c-eeEeeecccccccceEEEeecCC---------CHHHHHHHHhhcCEEEec
Confidence            1 01111  1233466677777221         136788889888998875

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.55  E-value=1.8e-12  Score=131.51  Aligned_cols=295  Identities=16%  Similarity=0.070  Sum_probs=162.2

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHH---HhCCC-CCceEEEcCCHHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALA---SKMPG-NLKVVFFTNSGTEANEL  173 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~~~~~~~~elae~L~---~~~~~-~~~~v~~~~sGseA~e~  173 (447)
                      |+|..++-      ..++.|.+++.+.+....   +....|......++.+.++   +.++. ..++|+|++|++|++..
T Consensus         2 yld~aa~~------~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~   75 (382)
T TIGR03403         2 YLDNNATT------MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW   75 (382)
T ss_pred             cccCcCCC------CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence            66755433      367899999988776531   2222233333344444443   34433 35789999999999999


Q ss_pred             HHHHHHh----hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          174 AIMMARL----YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       174 Aik~ar~----~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      +++....    ..+++.|++....|+........+...        ...+..++...  .  +..|    .+++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~--------G~~v~~v~~~~--~--g~~d----~~~l~~~i~~  139 (382)
T TIGR03403        76 VLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESL--------GVEVTYLPINE--Q--GTIT----AEQVREAITE  139 (382)
T ss_pred             HHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHC--------CCEEEEEecCC--C--CCCC----HHHHHHhccc
Confidence            9985521    123456776654443322221111000        01222333211  1  1123    4667766642


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                          ++.++++..+++++|.+.+    +++|.++|+++|+++|+|++|. +|..   .  ++.....+|+++++  |-+|
T Consensus       140 ----~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~---~--~~~~~~~~D~~~~s~~K~~g  205 (382)
T TIGR03403       140 ----KTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI---P--VDVQKAGVDFLSFSAHKFHG  205 (382)
T ss_pred             ----CCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC---c--cCccccCCCEEEEcchhhCC
Confidence                4567778778888999887    8999999999999999999986 4321   1  22223347999888  9543


Q ss_pred             CCccccccccCHHHH--HhhcCCc---ccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          328 NGIPLGAVVTTPEIA--EVLTRRN---YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       328 ~G~pigav~~~~~i~--~~l~~~~---~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      . .-+|++..+++..  ..+....   ....+..|..+..++.++|+.+++  +...++.+++.++|+++|.++    +.
T Consensus       206 p-~G~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~----~~  280 (382)
T TIGR03403       206 P-KGVGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL----PD  280 (382)
T ss_pred             C-CceEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----CC
Confidence            1 1156666554431  1110000   012344567777677777876644  223345555555555555443    32


Q ss_pred             eeeEee----cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          401 IGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       401 i~~vrg----~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.-+..    ...++.+.+..      .   ....+.+.|.++||.++.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~L~~~gI~v~~  320 (382)
T TIGR03403       281 VFVVGDREHRVPNTILISIKG------V---EGEAMLWDLNKAGIAAST  320 (382)
T ss_pred             EEEECCCCCCcCCEEEEEeCC------C---CHHHHHHhhccCCEEEEc
Confidence            222211    12344454421      0   134566778899999984

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR01814 kynureninase kynureninase

Probab=99.55  E-value=1.8e-12  Score=132.65  Aligned_cols=302  Identities=16%  Similarity=0.109  Sum_probs=169.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc--cc----cchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--LY----LNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~--~~----~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      ++..|||-.+      +|-.++.|.+|+.+.++.......  .+    ......+..+++ +.++...++|+|++|+|++
T Consensus        26 ~~~iyld~~a------~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~~~v~~~~~~t~~   98 (406)
T TIGR01814        26 NAVIYLDGNS------LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLVGAKEDEVVVMNTLTIN   98 (406)
T ss_pred             CCcEEecCCC------cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cccCCCCCcEEEeCCchHH
Confidence            3457777433      233578888998877765421111  01    111222333445 6676666789999999999


Q ss_pred             HHHHHHHHHhhcCCC-eEEEEcCCcccCchhhhhccCCCCccccccCCCeE------eecCCCCcCCCCCCChHHHHHHH
Q 013235          171 NELAIMMARLYTGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH------HALNPDPYRGVFGADGEMYAKDV  243 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~-~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~------~~~~p~~~~~~~~~d~~~~~~~l  243 (447)
                      +..+++......+++ .|++.+..|............         ..|+.      .++...    .+..|    .+++
T Consensus        99 l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~---------~~g~~~~~~~~~~~~~~----~g~~~----~~~l  161 (406)
T TIGR01814        99 LHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQ---------LHGLTVEESMVQIEPRE----EETLR----LEDI  161 (406)
T ss_pred             HHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHH---------hcCCCcccceEEeccCC----CCccC----HHHH
Confidence            999887542111122 455544555432221111000         00111      111110    01112    4566


Q ss_pred             HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe-
Q 013235          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM-  322 (447)
Q Consensus       244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~-  322 (447)
                      ++.++.. .+++++|+++.+++.+|.+.+    +++|.++|+++|+++|+|++|+ +|..   .+..+.+|  +|++++ 
T Consensus       162 ~~~~~~~-~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~---~id~~~~g--vD~~~~s  230 (406)
T TIGR01814       162 LDTIEKN-GDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV---PLDLHDWG--VDFACWC  230 (406)
T ss_pred             HHHHHhc-CCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc---ccccccCC--CCEEEEc
Confidence            6666543 237889999999999999998    9999999999999999999997 4432   12233334  577765 


Q ss_pred             -eccccCCccccccccCHHHHHhhcCCc---cc----------cc---------CC-CChHHHHHHHHHHHHHhhh---h
Q 013235          323 -AKGIGNGIPLGAVVTTPEIAEVLTRRN---YF----------NT---------FG-GNPVCTAAGHAVLKVIQKD---K  375 (447)
Q Consensus       323 -sK~lg~G~pigav~~~~~i~~~l~~~~---~~----------~T---------~~-~np~a~aaala~L~~i~~~---~  375 (447)
                       -|.|.+|.. |++...++..+.+....   +.          .+         .+ -|..++++..++|+.+++.   .
T Consensus       231 ~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~  309 (406)
T TIGR01814       231 TYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEA  309 (406)
T ss_pred             CccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHH
Confidence             498876533 33344333332232210   00          01         11 2446677777799988653   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---hcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          376 LQNNAHVVGSYLKERLTALKD---KYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       376 l~~~~~~~g~~l~~~L~~l~~---~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ..++.+++.+++++.|+++..   ...+.+  +.+.++.++.+.+. .         ....+.+.|.++||++.
T Consensus       310 i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~---------~~~~~~~~L~~~gi~v~  373 (406)
T TIGR01814       310 LRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V---------PGKAVFQALIKRGVIGD  373 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C---------CHHHHHHHHHHCCEEEe
Confidence            566777777777777766421   111111  22234556666652 0         13568888999999874

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.55  E-value=4.1e-13  Score=136.41  Aligned_cols=254  Identities=17%  Similarity=0.128  Sum_probs=157.4

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|.++...+|+++|+++.+.  +..++++||+.|+..++....  ..++.||+..+.| +.+.........        
T Consensus        56 ~r~~~pt~~~Le~~lA~l~G~--~~al~~~sG~~Ai~~~l~al~--~~Gd~Vv~~~~~y-~~~~~~~~~~~~--------  122 (386)
T PRK06767         56 SRLGNPTVKLFEERMAVLEGG--EEALAFGSGMAAISATLIGFL--KAGDHIICSNGLY-GCTYGFLEVLEE--------  122 (386)
T ss_pred             cCCCCcchHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCcH-HHHHHHHHHHHh--------
Confidence            456778888999999999864  456788999999988875432  3557777777655 444333221110        


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++.....+.       .|    .+++++.+.   + ++.+|++|..++++|.+.+    +++|.++|+++|+++|+||
T Consensus       123 ~~gi~~~~~~~-------~d----~~~l~~~i~---~-~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~  183 (386)
T PRK06767        123 KFMITHSFCDM-------ET----EADIENKIR---P-NTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDN  183 (386)
T ss_pred             hcCeEEEEeCC-------CC----HHHHHHhhC---c-CceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEEC
Confidence            01222111100       12    456666654   2 5678888888888888876    8999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-Cccc-cccccCHHHHHhhcCCcccccCC--CChHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLK  369 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-gav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~L~  369 (447)
                      ++. .+..+ ..  . .+|  .|+++  ++|.+++ |.++ |+++++++.++.+.... ...++  .+|+.+++++..|+
T Consensus       184 a~a-~~~~~-~p--l-~~g--~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~-~~~~g~~~~~~~a~l~~~~L~  255 (386)
T PRK06767        184 TFC-SPYLQ-RP--L-ELG--CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPM-RKDIGGIMAPFDAWLLLRGLK  255 (386)
T ss_pred             CCc-ccccC-Cc--h-hcC--CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHH-HHHhCCCCCHHHHHHHHcCCC
Confidence            985 22222 11  1 123  47775  5699986 6775 88888988776543211 11122  25776666666665


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~  437 (447)
                      .+.  ...++.+++..++.+.|++    ++.+..|            +|.|-|+.+++..+       .+.+.++.+.|.
T Consensus       256 tl~--~r~~~~~~~a~~la~~L~~----~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~-------~~~~~~f~~~l~  322 (386)
T PRK06767        256 TLA--VRMDRHCDNAEKIVSFLKN----HDAVEGVWYPEGELASRQMKRGGGVISFSIKGG-------KEETQAFINDLH  322 (386)
T ss_pred             cHH--HHHHHHHHHHHHHHHHHHc----CCCccEEECCCcHHHHHhCCCCCceEEEEEcCC-------HHHHHHHHHhCC
Confidence            432  2445556666666666654    3444433            36788999998421       123567777776


Q ss_pred             hCCce
Q 013235          438 GICAL  442 (447)
Q Consensus       438 ~~Gvl  442 (447)
                      ..++.
T Consensus       323 ~~~~~  327 (386)
T PRK06767        323 FITIA  327 (386)
T ss_pred             ccEEe
Confidence            55443

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.54  E-value=6.7e-13  Score=135.39  Aligned_cols=236  Identities=18%  Similarity=0.161  Sum_probs=151.0

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|.++...+|+++|+++...  +.+++++||+.|+..++...  ..++++|++.+..| |.+.......        ..
T Consensus        65 ~r~~~p~~~~le~~lA~l~g~--~~al~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~~-~~t~~~~~~~--------~~  131 (403)
T PRK07810         65 SRYGNPTVSMFEERLRLIEGA--EACFATASGMSAVFTALGAL--LGAGDRLVAARSLF-GSCFVVCNEI--------LP  131 (403)
T ss_pred             eCCCCchHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHHHH--hCCCCEEEEccCCc-chHHHHHHHH--------HH
Confidence            467888899999999999853  46789999999999988654  23567777766544 4443322100        00


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+..    ++.+|++|...++.|.+.+    +++|.++|+++|+++|+||
T Consensus       132 ~~G~~v~~vd~-------~d----~~~l~~ai~~----~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~  192 (403)
T PRK07810        132 RWGVETVFVDG-------ED----LSQWEEALSV----PTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDN  192 (403)
T ss_pred             HcCcEEEEECC-------CC----HHHHHHhcCc----CceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            11332222211       23    5667776642    5678999988888888876    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-Cccc-cccccCHHHHH-hhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-gav~~~~~i~~-~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      ++.- +... .  .. .+|  .|+++  ++|.+++ |..+ |+++++++.+. .+...........+|..++.++..|+.
T Consensus       193 a~a~-~~~~-~--~~-~~g--aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t  265 (403)
T PRK07810        193 VFAT-PLLQ-R--GL-PLG--ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET  265 (403)
T ss_pred             CCCc-cccC-C--hh-hcC--CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc
Confidence            9852 2111 1  11 123  58886  6699986 6666 77778877554 232111112224678888888888876


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe------------------ecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR------------------GRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------g~Gl~~giel~  416 (447)
                      +..  ..++..++..++.+.|+    +++.+..|.                  |.|-|+.+++.
T Consensus       266 l~~--R~~~~~~~a~~~a~~L~----~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~  323 (403)
T PRK07810        266 LAL--RVRHSNASALRIAEFLE----GHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD  323 (403)
T ss_pred             HHH--HHHHHHHHHHHHHHHHh----cCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence            532  33444444444444443    344454444                  78999999995

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.54  E-value=8.5e-13  Score=134.41  Aligned_cols=237  Identities=16%  Similarity=0.124  Sum_probs=155.6

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..++.++...+|+++|+++.+.  +.+++++||++|+..++....  ..++.||+..++|++........         .
T Consensus        58 y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssG~~Ai~~~l~all--~~GD~Vi~~~~~y~~~~~~~~~~---------~  124 (398)
T PRK08249         58 YSRNTNPTVQAFEEKVRILEGA--EAATAFSTGMAAISNTLYTFL--KPGDRVVSIKDTYGGTNKIFTEF---------L  124 (398)
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCchHHHHHHHHHH---------H
Confidence            3456788999999999999853  557788999999999986442  35678999999986542211110         0


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                      ...|+.....+.       .|    .+++++.+..    ++.+|++|...+++|.+.+    +++|.++|+++|+++|+|
T Consensus       125 ~~~Gi~v~~vd~-------~d----~e~l~~~i~~----~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD  185 (398)
T PRK08249        125 PRMGVDVTLCET-------GD----HEQIEAEIAK----GCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVD  185 (398)
T ss_pred             hhCCeEEEEcCC-------CC----HHHHHHhcCC----CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEE
Confidence            111333222211       23    4567766642    5678888877788888876    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEE--eeccccC-Cccc-cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      |+|..+. ..      .......|+++  ++|.+++ |-.+ |++++++++++.+...........+|..++.++..|+.
T Consensus       186 ~t~a~~~-~~------~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t  258 (398)
T PRK08249        186 NTFATPI-NQ------NPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT  258 (398)
T ss_pred             CCcCccc-cC------CchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch
Confidence            9987431 11      11123457774  6799986 5444 66778888887765433334455678888888887776


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------EeecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~Gl~~giel~  416 (447)
                      +..  ..++..++.+.+.+.|++    ++.+..                  ..|.|-|+.|++.
T Consensus       259 L~~--R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~  316 (398)
T PRK08249        259 LKL--RVRQQQESAMALAKYLQT----HPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK  316 (398)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc
Confidence            632  334445555555555554    332321                  2467889999995

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.54  E-value=2.1e-12  Score=130.61  Aligned_cols=277  Identities=13%  Similarity=0.095  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      ++..+++.+.+.....+   ...+...++++.+++.+  +.+.+++++||++|+..+++... ..+++.||+...+|.+.
T Consensus        11 ~~e~~a~~~~~~~~~~~---~~g~~~~~~e~~la~~~--g~~~~v~~~sgt~aL~~~l~al~-~~pGd~Viv~~~t~~~~   84 (376)
T TIGR02379        11 GQELEYIAEAISEGKLS---GDGPFSRRCETWLENRT--GTKKALLTPSCTAALEMAALLLD-IQPGDEVIMPSYTFVST   84 (376)
T ss_pred             HHHHHHHHHHHHcCCcc---CCcHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCcHHH
Confidence            45677787777664321   12456788999999987  35789999999999999887542 34568899999888765


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      .......             |...+..+... ..+..|    .+++++.+..    ++.+|+  |++ ..|...+    +
T Consensus        85 ~~~~~~~-------------G~~~v~vd~d~-~~~~~d----~~~le~~i~~----~tk~Ii--p~~-~~G~~~d----~  135 (376)
T TIGR02379        85 ANAFVLR-------------GAKIVFVDIRP-DTMNID----ETLIESAITH----RTKAIV--PVH-YAGVACD----M  135 (376)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCCC----HHHHHHhcCc----CceEEE--EeC-CCCCccC----H
Confidence            4333221             22222222111 112233    4567766642    455655  443 3455554    8


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcCCc-c-
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN-Y-  350 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~~~-~-  350 (447)
                      ++|.++|++||+++|.|++|+ +|.    .+.-...|..-|+.+||    |.++.|.+.|+++++ +++++.+.... + 
T Consensus       136 ~~I~~la~~~~i~vIeDaa~~-~g~----~~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g  210 (376)
T TIGR02379       136 DTIMALANKHQLFVIEDAAQG-VMS----TYKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKG  210 (376)
T ss_pred             HHHHHHHHHCCCEEEEECccc-cCC----ccCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhC
Confidence            999999999999999999996 432    11112334445899999    999988788988776 77776654311 1 


Q ss_pred             -------------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----hcCC-eeeE-e
Q 013235          351 -------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD----KYGI-IGDV-R  405 (447)
Q Consensus       351 -------------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~-i~~v-r  405 (447)
                                         +..|--+.+.++.+++.|+.+++  +.++-+++.++..+.|.++..    ..+. .... .
T Consensus       211 ~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~  288 (376)
T TIGR02379       211 TNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQH  288 (376)
T ss_pred             CCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCee
Confidence                               11122346777778888887644  555556666677777766431    1111 1011 1


Q ss_pred             ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ... ++.+.+...        ....++.+.|.++||-++.
T Consensus       289 ~~~-~~~i~~~~~--------~~r~~l~~~L~~~gI~~~~  319 (376)
T TIGR02379       289 NAH-MFYIKLKDE--------DDRNELIKYLKEQEIMAVF  319 (376)
T ss_pred             eeE-EEEEEECCc--------CCHHHHHHHHHHCCCCccc
Confidence            112 223444211        1246799999999998764

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.53  E-value=1.1e-12  Score=132.91  Aligned_cols=236  Identities=15%  Similarity=0.099  Sum_probs=154.0

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|.++...+|+++|+++..  .+.+++++||++|+..++...  ..+++.|++..++|.+.......+...        
T Consensus        46 ~R~~~p~~~~le~~lA~l~g--~~~v~~~~gg~~Ai~~~l~al--l~~GD~Vl~~~p~y~~~~~~~~~~~~~--------  113 (382)
T TIGR02080        46 SRSGNPTRDLLQQALAELEG--GAGAVVTNTGMSAIHLVTTAL--LGPDDLLVAPHDCYGGTYRLLNALAKK--------  113 (382)
T ss_pred             cCCCCchHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHH--cCCCCEEEEcCCCcHHHHHHHHHHHhh--------
Confidence            56788899999999999885  356899999999999999754  335678999999996543322111110        


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                       .++.....+.       .|    .+++++.+..    ++.+|++|..++++|.+.+    +++|.++|+++|+++|+||
T Consensus       114 -~~~~v~~~d~-------~d----~~~l~~ai~~----~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~  173 (382)
T TIGR02080       114 -GCFRVLFVDQ-------GD----EQALRAALAQ----KPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDN  173 (382)
T ss_pred             -cCeEEEEECC-------CC----HHHHHHhcCc----CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEEC
Confidence             1121111110       12    4566666642    4678888877888888876    8999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEE--EeeccccC--Ccccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      +|..+-..       .......|++  +++|.++|  ++..|++++ ++++.+.+.......+...+|+.+..++..|+.
T Consensus       174 a~~~~~~~-------~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~t  246 (382)
T TIGR02080       174 TFLSPALQ-------NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRT  246 (382)
T ss_pred             CCcccccC-------CchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccch
Confidence            99632111       1111234777  47899974  578888776 577776665333334555789998888777765


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------EeecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~Gl~~giel~  416 (447)
                      +...  +++..++...+.+.|+    .++.+..                  ..|.|-|+.|++.
T Consensus       247 l~~R--~~~~~~na~~~a~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~  304 (382)
T TIGR02080       247 LVAR--MRLQQRNAQAIVEYLQ----TQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK  304 (382)
T ss_pred             HHHH--HHHHHHHHHHHHHHHH----hCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence            5322  3333444444444443    3343322                  2467889999995

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.53  E-value=8e-12  Score=121.26  Aligned_cols=272  Identities=14%  Similarity=0.115  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhCC--CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~~--~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~  192 (447)
                      +.|.|.+|+.+.++....+-+ +.++ ...++....+++..  ...+.++|+++.--++..+|+....  .++.|++-.+
T Consensus        39 ~pp~i~~Al~~rvdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~--~gd~Vvi~tP  115 (388)
T COG1168          39 TPPEIIEALRERVDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK--PGDGVVIQTP  115 (388)
T ss_pred             CCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc--CCCeeEecCC
Confidence            689999999999887533222 2233 44556666666543  3456799999999999999985443  5788999999


Q ss_pred             CcccCchhhhhccCCCCccccccCCCeEeecCCCCcC-CCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       193 ~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      .||=-. .+...            .|-..+++|..+. +.|.-|    .++||+.+...  .....++++|-++.|  .+
T Consensus       116 vY~PF~-~~i~~------------n~R~~i~~pL~~~~~~y~iD----~~~LE~~~~~~--~vkl~iLCnPHNP~G--rv  174 (388)
T COG1168         116 VYPPFY-NAIKL------------NGRKVIENPLVEDDGRYEID----FDALEKAFVDE--RVKLFILCNPHNPTG--RV  174 (388)
T ss_pred             CchHHH-HHHhh------------cCcEEEeccccccCCcEEec----HHHHHHHHhcC--CccEEEEeCCCCCCC--cc
Confidence            996211 11111            2334455554432 122234    67888888642  124677778866655  45


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC-----EEEe--ecccc-CCcccccccc-CHHHH
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-----IVTM--AKGIG-NGIPLGAVVT-TPEIA  342 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD-----ivt~--sK~lg-~G~pigav~~-~~~i~  342 (447)
                      .+++.|.+|.+||.+||+++|.|||+..+-..|.+...+  ..+.|+     |.++  ||++. .|+-.++++. ++++.
T Consensus       175 wt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~--a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr  252 (388)
T COG1168         175 WTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPF--ASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELR  252 (388)
T ss_pred             ccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccch--hhcChhhhcceEEEeeccccccchhhhheeEEecCHHHH
Confidence            689999999999999999999999999998777322222  223332     3333  59887 6888888765 55554


Q ss_pred             HhhcCC-cccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecce-eEEEEEe
Q 013235          343 EVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF-LLGVEFV  416 (447)
Q Consensus       343 ~~l~~~-~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl-~~giel~  416 (447)
                      +.+... ......+-|.+++.|..++.+.=+.  +++.+.++++.+++.+.|.+.   .|.+.-..-.|. +++++|.
T Consensus       253 ~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~---~P~v~v~~p~gTYL~WLD~r  327 (388)
T COG1168         253 AKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH---LPGVKVTEPQGTYLAWLDCR  327 (388)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh---CCCcEEecCCCceeeeeecc
Confidence            444332 2234455688898888888763211  235555666666666555543   355555555554 4567774

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.53  E-value=5.4e-12  Score=127.55  Aligned_cols=289  Identities=16%  Similarity=0.107  Sum_probs=168.4

Q ss_pred             CCHHHHHHHHHHHHhcc-cc-ccccc-----chHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235          116 CHPYVVDSIVNQIKRIQ-HS-TVLYL-----NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDI  187 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~-~~-~~~~~-----~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~i  187 (447)
                      .++.+.+++.+.++... .. ...|.     .....++.+.|++++.... ++|+|++|+++++..++..  ....++.|
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~--~~~~gd~v   89 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG--LLKEGDHV   89 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh--ccCCCCEE
Confidence            45789999988887642 11 11122     2556788899999886533 4799999999999998864  23356778


Q ss_pred             EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCC
Q 013235          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG  267 (447)
Q Consensus       188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~g  267 (447)
                      ++...+|.+..........         ..|+.....+...  .+..|    .+++++.+.   + ++++|++..+++++
T Consensus        90 l~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~--~~~~d----~~~l~~~~~---~-~~~~v~~~~~~n~t  150 (376)
T TIGR01977        90 ITTPMEHNSVARPLECLKE---------QIGVEITIVKCDN--EGLIS----PERIKRAIK---T-NTKLIVVSHASNVT  150 (376)
T ss_pred             EECcchhhHHHHHHHHHHH---------HcCcEEEEEecCC--CCCcC----HHHHHHhcC---C-CCeEEEEECCCCCc
Confidence            7766665433211111100         0122222221111  11123    566766663   2 56677777778888


Q ss_pred             ceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHH-HHh
Q 013235          268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEI-AEV  344 (447)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i-~~~  344 (447)
                      |.+.+    +++|.++|+++|+++|+|++++ +|...   +..+.  ..+|+++++  |.+++.-..|+++.+++. +..
T Consensus       151 G~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~---~~~~~--~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~  220 (376)
T TIGR01977       151 GTILP----IEEIGELAQENGIFFILDAAQT-AGVIP---IDMTE--LAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKP  220 (376)
T ss_pred             cccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC---CCchh--cCCCEEEecccccccCCCCceEEEEcCCcCcCc
Confidence            88887    8999999999999999999995 54332   11222  346888765  988753334666655543 111


Q ss_pred             hcCCc--c--------------cccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeee--
Q 013235          345 LTRRN--Y--------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGD--  403 (447)
Q Consensus       345 l~~~~--~--------------~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--  403 (447)
                      +....  .              +.....|....++..++|+.+.+.   .+.++.+++.++++++|.++. ...+...  
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~  299 (376)
T TIGR01977       221 LKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREIN-KVKIYGPAD  299 (376)
T ss_pred             eecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-CeEEeCCCC
Confidence            11100  0              011123455566666788887654   356777778888877776542 1111110  


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      ....+.++.+.+...         ...++.+.|.++ ||.++.
T Consensus       300 ~~~~~~~v~~~~~~~---------~~~~~~~~L~~~~gi~v~~  333 (376)
T TIGR01977       300 PANRVGVVSFTVEGI---------DSEEVADILDEKFDIATRT  333 (376)
T ss_pred             ccccCCeEEEEECCC---------CHHHHHHHHhccCCEEEEc
Confidence            111345666665211         135688888887 888754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.52  E-value=1e-11  Score=125.17  Aligned_cols=248  Identities=13%  Similarity=0.054  Sum_probs=145.0

Q ss_pred             eEEEecCCcccccCCCC--CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~--~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      .+|+...-+  ..||-+  +++|.+|+.+.++.+.     ...+...++++++++.++  .+.+++++|+++|+.++++.
T Consensus         9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~a~~~g--~~~~~~~~g~t~al~~al~a   79 (363)
T TIGR01437         9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNYF-----EIKELVNKTGEYIANLLG--VEDAVIVSSASAGIAQSVAA   79 (363)
T ss_pred             eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhhC--CCeEEEEcCHHHHHHHHHHH
Confidence            455544333  356655  7999999999876541     245667889999999885  45789999999999999986


Q ss_pred             HHhhcCCC---------------eEEEEcCCcccCc---hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHH
Q 013235          178 ARLYTGCN---------------DIISLRNAYHGNA---AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (447)
Q Consensus       178 ar~~t~~~---------------~ii~~~~~yHG~~---~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (447)
                      ...  +++               +||+..+.|..+.   ...+..            .|...+..+.    .+..|    
T Consensus        80 l~~--~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~------------~g~~~v~v~~----~~~~d----  137 (363)
T TIGR01437        80 VIT--RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL------------GGGKVVEAGY----ANECS----  137 (363)
T ss_pred             Hhc--CCCcchhhcccccccccceEEEECccchhcCCchHHHHHh------------cCCeEEEEcC----CCCCC----
Confidence            632  333               6666665443221   111111            1222222211    11123    


Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCE
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI  319 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDi  319 (447)
                      .+++++.+..   +..+.++++...+..|.+.+    +++|.++|++||+++|+|++|. .     .+.....+|  .|+
T Consensus       138 ~~~le~ai~~---~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~-----~~~~~~~~g--~D~  202 (363)
T TIGR01437       138 AEQLEAAITE---KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E-----DLQKYYRLG--ADL  202 (363)
T ss_pred             HHHHHHhcCh---hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C-----chHHHHHcC--CCE
Confidence            5678877752   22334435543445566665    8999999999999999999996 1     111111233  488


Q ss_pred             EEee--ccccCCccccccccCHHHHHhhcCCccc--ccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Q 013235          320 VTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       320 vt~s--K~lg~G~pigav~~~~~i~~~l~~~~~~--~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~  393 (447)
                      +++|  |.++ |...|++++++++++.+....+.  ..+......+++..++++.+.+  .+..+...+..++++++|.+
T Consensus       203 ~~~S~~K~l~-gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~  281 (363)
T TIGR01437       203 VIYSGAKAIE-GPTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNT  281 (363)
T ss_pred             EEEeCCcccC-CCceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhc
Confidence            8766  8885 45689988888888765321111  1111112234444455655543  22333333445566666665


Q ss_pred             H
Q 013235          394 L  394 (447)
Q Consensus       394 l  394 (447)
                      +
T Consensus       282 i  282 (363)
T TIGR01437       282 L  282 (363)
T ss_pred             C
Confidence            4

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.1e-12  Score=128.80  Aligned_cols=242  Identities=19%  Similarity=0.183  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHhcccccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          120 VVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       120 v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      ..+++.+.++++++...     ......+.++.+..++.+...  ..+...-|..+|..-+.   .+-++...|.-+.-.
T Consensus       156 ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e--~a~vF~mGf~TNs~~~p---~l~~~gsLIiSDelN  230 (519)
T KOG1357|consen  156 CAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVE--DAIVFSMGFATNSMNIP---SLLGKGSLIISDELN  230 (519)
T ss_pred             CChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCc--ceEEEeccccccccCcc---eeecCCcceeecccc
Confidence            33344445555544211     355778889999999888643  33444556555554443   122555566667777


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-----CCCeEEEEEccccCCCce
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-----SGHVAGFLSESIQGVGGI  269 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-----~~~~aavi~Epi~~~gG~  269 (447)
                      |+.......+++....-+.+                   ||.+.+..-|++.|.+..     +-+...+|+|.+.++.|.
T Consensus       231 HaSi~~GaRLSgAtiRVfkH-------------------Ndm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~  291 (519)
T KOG1357|consen  231 HASLITGARLSGATTRVFRH-------------------NDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGT  291 (519)
T ss_pred             chheeccccccCceEEEEec-------------------CCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCe
Confidence            87776655555433222211                   453333333444443322     335678999999999999


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEeccccC--ccccCCCcccccccCCCC---CEE--EeeccccC-CccccccccCHHH
Q 013235          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVVP---DIV--TMAKGIGN-GIPLGAVVTTPEI  341 (447)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--fgr~G~~~~~~~~~gv~p---Div--t~sK~lg~-G~pigav~~~~~i  341 (447)
                      ++.    |+++..+++++.+.|++||++++  .|++|  ....+.+++.|   ||+  ||.|++|+ |   |++.+++++
T Consensus       292 iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG--rgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk~l  362 (519)
T KOG1357|consen  292 IVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG--RGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSKEL  362 (519)
T ss_pred             ecc----cHHHHHhhccccEEEEeeccccccccCCCC--cceeeccCCCchhheeecceehhhccccc---ceecCcHHH
Confidence            998    89999999999999999999885  46677  34457777755   554  78899984 4   578999999


Q ss_pred             HHhhcCCcccccCC--CChHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHH
Q 013235          342 AEVLTRRNYFNTFG--GNPVCTAAGHAVLKVIQKD-------KLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       342 ~~~l~~~~~~~T~~--~np~a~aaala~L~~i~~~-------~l~~~~~~~g~~l~~~L~~l  394 (447)
                      ++.+...++..+++  -+|..++..+..++.|..+       +-.+++.++..++|..|+..
T Consensus       363 id~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~  424 (519)
T KOG1357|consen  363 IDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM  424 (519)
T ss_pred             HhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence            99987655444443  3466666677778887632       24466666777777666554

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.51  E-value=1.2e-12  Score=133.33  Aligned_cols=242  Identities=17%  Similarity=0.099  Sum_probs=151.4

Q ss_pred             ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      ...+|.++...+|+++|+++.+.  +..+.++||+.|+..++...  ...+++|++.+..|.+.........        
T Consensus        58 ~y~r~~~p~~~~Le~~lA~l~G~--~~~~~~~sG~~Ai~~~l~~~--l~~Gd~Vl~~~~~y~~~~~~~~~~~--------  125 (398)
T PRK07504         58 IYSRYSNPTVDMFEKRMCALEGA--EDARATASGMAAVTAAILCQ--VKAGDHVVAARALFGSCRYVVETLL--------  125 (398)
T ss_pred             eeecCCCchHHHHHHHHHHHhCC--CeeeEecCHHHHHHHHHHHH--hCCCCEEEEcCCchhHHHHHHHHHH--------
Confidence            33467788899999999999854  44556889999998877532  2356788888887765433221110        


Q ss_pred             ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                       ...|+.....+.       .|    .+++++.+.   + ++.+|++|...++.|.+.+    +++|.++|+++|+++|+
T Consensus       126 -~~~G~~v~~vd~-------~d----~e~l~~ai~---~-~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvv  185 (398)
T PRK07504        126 -PRYGIESTLVDG-------LD----LDNWEKAVR---P-NTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVV  185 (398)
T ss_pred             -hhcCeEEEEECC-------CC----HHHHHHhcC---c-CceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEE
Confidence             011333222211       23    466766664   2 5678888888888888876    99999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEE--eeccccC-Ccccc-ccccCHHHHH-hhcCCcccccCCCChHHHHHHHHHH
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLG-AVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pig-av~~~~~i~~-~l~~~~~~~T~~~np~a~aaala~L  368 (447)
                      ||+|..+ ... ..     .....|+++  ++|.+++ |.++| +++++++.+. .+...........+|..++.++..|
T Consensus       186 D~a~a~~-~~~-~~-----~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L  258 (398)
T PRK07504        186 DNVFATP-LFQ-KP-----LELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGL  258 (398)
T ss_pred             ECCcccc-ccC-Cc-----hhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence            9998632 111 11     122358875  5799986 78885 5667776554 2321111122345788888888888


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHH----hcCCe----------eeEeecceeEEEEEe
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKD----KYGII----------GDVRGRGFLLGVEFV  416 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~i----------~~vrg~Gl~~giel~  416 (447)
                      +.+..  ..++..++...+.+.|++...    .||..          ...+|.|.|+.|++.
T Consensus       259 ~tl~~--R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~  318 (398)
T PRK07504        259 ETLPV--RVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK  318 (398)
T ss_pred             chHHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence            77632  334444556666665554210    01111          123567899999994

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.50  E-value=2.9e-12  Score=128.98  Aligned_cols=233  Identities=18%  Similarity=0.117  Sum_probs=151.3

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++..  .+.++.++||++|+.+++.+.   ..+++||+....|++........ .        +
T Consensus        49 ~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~~l---~~GD~VI~~~~~yg~~~~~~~~~-~--------~  114 (364)
T PRK07269         49 TRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFSVF---PVGSKVVAVRDLYGGSFRWFNQQ-E--------K  114 (364)
T ss_pred             eCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHh---CCCCEEEEecCCcCchHHHHHHH-H--------h
Confidence            46778889999999999984  567899999999999998532   35688998888885543221111 0        0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++..         .|..|    .+++++.+.   + ++.+|++|...+..|.+..    +++|.++|+++|+++|+||
T Consensus       115 ~~~~~~---------~~~~d----~~~l~~~i~---~-~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~  173 (364)
T PRK07269        115 EGRFHF---------TYANT----EEELIAAIE---E-DTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDN  173 (364)
T ss_pred             cCcEEE---------EecCC----HHHHHHhcC---c-CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEEC
Confidence            011111         11123    456776664   2 4567888877777777775    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEEe--eccccC-C-cccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-G-IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-G-~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      ++..    +  .+ ....+.-.|++++  .|.++| | .-.|++++ ++++++.+...........+|+.++.++..|+.
T Consensus       174 t~~~----~--~~-~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t  246 (364)
T PRK07269        174 TFYS----P--IY-QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT  246 (364)
T ss_pred             CCcc----c--cc-CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc
Confidence            9631    1  11 1223455788875  498875 3 33466676 466766554211112234679998888888865


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE--eecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV--RGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v--rg~Gl~~giel~  416 (447)
                      +.  ..+++..++...+.+.|    +.++.+..|  +|.|-|+.|++.
T Consensus       247 L~--~r~~~~~~na~~~a~~L----~~~p~v~~v~ypg~gg~~sf~~~  288 (364)
T PRK07269        247 LS--LRMERSTANAQEVVAFL----KKSPAVKEVLYTGKGGMISFKVA  288 (364)
T ss_pred             HH--HHHHHHHHHHHHHHHHH----HhCCCccEEeCCCcCcEEEEEEC
Confidence            52  23344445555554444    456655543  688999999984

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.50  E-value=3.3e-12  Score=129.61  Aligned_cols=237  Identities=15%  Similarity=0.097  Sum_probs=150.8

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      -.+|+++...+|+++|+++.+.  +.+++++||++|+..++....  ..++.|++.+++|++..........        
T Consensus        46 Y~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~l~--~~GD~Vl~~~~~y~~~~~~~~~~~~--------  113 (386)
T PRK08045         46 YSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK--------  113 (386)
T ss_pred             eeCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc--CCCCEEEEcCCCcHHHHHHHHHHHh--------
Confidence            3567888999999999999863  468899999999999987432  3567899999999754432221110        


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                       ..++.....+.       .|    .+++++.+..    ++.+|++|..+++.|.+.+    +++|.++|+++|+++|+|
T Consensus       114 -~~gi~v~~vd~-------~d----~e~l~~~l~~----~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivD  173 (386)
T PRK08045        114 -RGCYRVLFVDQ-------GD----EQALRAALAE----KPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVD  173 (386)
T ss_pred             -hCCeEEEEeCC-------CC----HHHHHHhccc----CCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEE
Confidence             01222111110       12    4566666542    5678888888888888876    899999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEE--eeccccC--Ccccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      |+|..... .      .....-.|+++  ++|.++|  +...|++++ ++++.+.+.......+...+|+.+..++..|+
T Consensus       174 eay~~~~~-~------~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~  246 (386)
T PRK08045        174 NTFLSPAL-Q------NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR  246 (386)
T ss_pred             CCCCcccc-C------CchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc
Confidence            99864311 1      11222348774  7799984  467888876 57776655432222344577888888777776


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEe
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFV  416 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~  416 (447)
                      .+..  ..++..+....+.+.|+    +|+.+..|                  .|.|-|+.|++.
T Consensus       247 tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~  305 (386)
T PRK08045        247 TLVP--RMELAQRNAQAIVKYLQ----TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD  305 (386)
T ss_pred             cHHH--HHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence            5431  12222333333333332    34433322                  477889999985

>PRK06460 hypothetical protein; Provisional

Probab=99.50  E-value=1.6e-12  Score=131.48  Aligned_cols=240  Identities=13%  Similarity=0.059  Sum_probs=144.4

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..++...+|+++|+++.... . .+.++||++|+..++...  ...+++|++..+.|.+........         ..
T Consensus        40 ~r~~~p~~~~L~~~lA~l~g~~-~-~v~~~sG~~ai~~~l~al--~~~Gd~Vl~~~~~~~~ty~~~~~~---------~~  106 (376)
T PRK06460         40 SREANPTVLELTKKIVELENAE-M-GVAFSSGMGAISTTALAL--LKPGNSVLVHRDMFGRSYRFFTDY---------LK  106 (376)
T ss_pred             eCCCCccHHHHHHHHHHHhCCC-c-EEEeCCHHHHHHHHHHHH--hCCCCEEEEecCCcCcHHHHHHHH---------HH
Confidence            4456788889999999998653 3 345588999999888643  224577887665553221111000         00


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       ++    .+.+++++.    .++.+|++|..++++|.+.+    +++|.++|+++|+++|+||
T Consensus       107 ~~G~~v~~~~~-------~~----~~~l~~~~~----~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDe  167 (376)
T PRK06460        107 NWGVNVDASNP-------GS----DNIIEKAKS----KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDA  167 (376)
T ss_pred             hhCcEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEEC
Confidence            11322222211       11    122344332    25678888988888898887    7899999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEE--EeeccccC--CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      +|..+ ...      .......|++  +++|.++|  +..+|++++++++++.+.......+.+.+|..+..++..++.+
T Consensus       168 a~~~~-~~~------~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l  240 (376)
T PRK06460        168 TFSTP-INQ------KPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTL  240 (376)
T ss_pred             CcCcc-ccC------ChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence            98632 111      1111124777  57899974  3678999999999887764322223334565555555555555


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH----hcCCe----------eeEeecceeEEEEEe
Q 013235          372 QKDKLQNNAHVVGSYLKERLTALKD----KYGII----------GDVRGRGFLLGVEFV  416 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~i----------~~vrg~Gl~~giel~  416 (447)
                      +  ...++..+..+++.+.|++...    .||.+          ....|.|-|+.|++.
T Consensus       241 ~--~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~  297 (376)
T PRK06460        241 K--IRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVN  297 (376)
T ss_pred             H--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence            3  2445566666666666654310    01111          012477899999985

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.49  E-value=3.8e-12  Score=128.43  Aligned_cols=234  Identities=19%  Similarity=0.115  Sum_probs=147.7

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|.++...+|+++|+++.+.  +..++++||++|+..++.+   ...+++||+.++.|++.........         .
T Consensus        47 ~r~~~pt~~~le~~la~l~g~--~~~~~~~sG~~ai~~~~~l---l~~Gd~Vl~~~~~y~~t~~~~~~~~---------~  112 (366)
T PRK08247         47 SRTGNPTRGVLEQAIADLEGG--DQGFACSSGMAAIQLVMSL---FRSGDELIVSSDLYGGTYRLFEEHW---------K  112 (366)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHH---hCCCCEEEEecCCcCcHHHHHHHHh---------h
Confidence            567888999999999999864  3457899999999987642   2356889999999986432221110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+..    ++.+|++|...++.|.+.    .+++|.++|+++|+++|+||
T Consensus       113 ~~G~~v~~vd~-------~d----~~~l~~~i~~----~tklv~le~P~NP~~~~~----dl~~I~~la~~~g~~lIvD~  173 (366)
T PRK08247        113 KWNVRFVYVNT-------AS----LKAIEQAITP----NTKAIFIETPTNPLMQET----DIAAIAKIAKKHGLLLIVDN  173 (366)
T ss_pred             ccCceEEEECC-------CC----HHHHHHhccc----CceEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEEC
Confidence            11222222211       12    4667766642    566788776556555444    39999999999999999999


Q ss_pred             ccc-CccccCCCcccccccCCCCCEE--EeeccccC--CccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          296 VQA-GFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       296 v~t-Gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      ++. ++  .+ .     ......||+  +++|.++|  ++..|+++++ +++.+.+.......+...+|..+..++..|+
T Consensus       174 t~~~~~--~~-~-----p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~  245 (366)
T PRK08247        174 TFYTPV--LQ-R-----PLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMK  245 (366)
T ss_pred             CCcccc--cc-C-----chhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccC
Confidence            983 22  11 1     111234776  47899985  4678888886 6676665432223344567877777777775


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee--EeecceeEEEEEe
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD--VRGRGFLLGVEFV  416 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrg~Gl~~giel~  416 (447)
                      .+..  ..++.+++...+.+.|+    +++.+..  .+|.|-|+.+++.
T Consensus       246 tl~~--r~~~~~~~a~~l~~~L~----~~p~v~~v~~P~~gg~~sf~~~  288 (366)
T PRK08247        246 TLAL--RMRQHEENAKAIAAFLN----EQPGVTDVLYPGRGGMLSFRLQ  288 (366)
T ss_pred             cHHH--HHHHHHHHHHHHHHHHH----hCCCeeEEecCCcCcEEEEEEC
Confidence            4422  22333455555555444    4455554  5667889999873

>PRK14012 cysteine desulfurase; Provisional

Probab=99.49  E-value=4.4e-12  Score=129.75  Aligned_cols=258  Identities=13%  Similarity=0.087  Sum_probs=152.7

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHH---hcccccc-----cc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK---RIQHSTV-----LY-LNHAIADFAEALASKMPGNLKVVFFTNSGTE  169 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~---~~~~~~~-----~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGse  169 (447)
                      +.|+|..+.      +..++.+.+++.+.+.   .......     .+ ..+...++.+++++.++.+.+.++|++||++
T Consensus         4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~   77 (404)
T PRK14012          4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE   77 (404)
T ss_pred             eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence            468886542      3467899999988775   2211110     01 1245667889999998766677999999999


Q ss_pred             HHHHHHHHHHh--hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          170 ANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      |+..+++.+..  ...++.|++....|+........+...        ...+..++.+.    .+..|    .+++++.+
T Consensus        78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~--------g~~~~~v~~~~----~g~~d----~~~l~~~i  141 (404)
T PRK14012         78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLERE--------GFEVTYLDPQS----NGIID----LEKLEAAM  141 (404)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhC--------CCEEEEEccCC----CCcCC----HHHHHHhc
Confidence            99999876532  234567777766664433222111000        01122232211    11123    56777776


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cc
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~  325 (447)
                      ..    ++.++++..+++++|.+.+    +++|.++|+++|+++|+|++|+ +|..-     ++.....+|+++++  |.
T Consensus       142 ~~----~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~-----~~~~~~~~D~~~~s~~K~  207 (404)
T PRK14012        142 RD----DTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP-----IDLSKLKVDLMSFSAHKI  207 (404)
T ss_pred             CC----CCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCcccCCCCEEEEehhhc
Confidence            42    4568888888888998887    8999999999999999999996 43221     12223458999888  97


Q ss_pred             ccCCccccccccCHHHHHhhcCCccc------ccCC-CChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Q 013235          326 IGNGIPLGAVVTTPEIAEVLTRRNYF------NTFG-GNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       326 lg~G~pigav~~~~~i~~~l~~~~~~------~T~~-~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~  393 (447)
                      +|.+ .+|+++.+++....+....++      ...+ .+.....+..++++.++.  ++..++.+++.+++.+.|++
T Consensus       208 ~gp~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~  283 (404)
T PRK14012        208 YGPK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD  283 (404)
T ss_pred             cCCC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            7543 578888776543222211111      0111 122223333355554432  23456666666677666655

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.49  E-value=2.3e-12  Score=129.93  Aligned_cols=232  Identities=18%  Similarity=0.127  Sum_probs=147.1

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|+++...+|+++|+++.  + +.+++++||++|+..++...  ...+++||+.+++|++....+....         .
T Consensus        46 ~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~~~~~~~~~l---------~  111 (366)
T PRK07582         46 GRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRAL--LRPGDTVVVPADGYYQVRALAREYL---------A  111 (366)
T ss_pred             ECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHh--cCCCCEEEEeCCCcHhHHHHHHHHH---------h
Confidence            4678888999999999998  3 34667899999999888643  3456889999999976654332110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .+.      .+...     .++..|++|...+++|.+.+    +++|.++|+++|+++|+||
T Consensus       112 ~~G~~v~~v~~-------~~~------~~~~~-----~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~  169 (366)
T PRK07582        112 PLGVTVREAPT-------AGM------AEAAL-----AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDN  169 (366)
T ss_pred             cCeEEEEEECC-------CCh------HHHhc-----cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEEC
Confidence            11333332221       110      11111     25567778877777776665    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC--Ccccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      +|.-.  .|.     .......|+++  ++|.++|  |+++|++++ ++++++.+........-..+|+.+..++..|+.
T Consensus       170 t~~~~--~~~-----~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t  242 (366)
T PRK07582        170 TTATP--LGQ-----RPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT  242 (366)
T ss_pred             CCCCc--ccc-----CchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc
Confidence            98421  121     11123458875  7799975  688999887 477777665322222223468887777766654


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe------------------ecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR------------------GRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------g~Gl~~giel~  416 (447)
                      +.  -..++..++...+.+.|++.    +.+..|.                  |.|-|+.|++.
T Consensus       243 l~--~R~~~~~~na~~la~~L~~~----p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~  300 (366)
T PRK07582        243 LG--LRFARQCANALAVAELLAGH----PAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA  300 (366)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHhC----CCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence            32  23355556666666665543    3333332                  67889999984

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.48  E-value=4.5e-12  Score=128.97  Aligned_cols=194  Identities=21%  Similarity=0.172  Sum_probs=123.1

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|.++...+|+++|+++.+  .+.+++++||++|+.+++...  ..+++.||+.+++|.+.....-...         .
T Consensus        60 ~r~~~pt~~~Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al--~~~GD~Vl~~~~~y~~~~~~~~~~~---------~  126 (394)
T PRK07050         60 GLHATPTSLALAQRLAEIEG--GRHALLQPSGLAAISLVYFGL--VKAGDDVLIPDNAYGPNRDHGEWLA---------R  126 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHhC--CCeEEEeccHHHHHHHHHHHH--hCCCCEEEEecCCcccHHHHHHHHH---------H
Confidence            46778888999999999885  467999999999999999755  2466889999988865432110100         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .+    .+++++.+.    .++.+|++|...+..|...    .+++|.++|+++|+++|+||
T Consensus       127 ~~Gi~v~~vd~-------~~----~~~l~~~i~----~~tklV~le~p~Np~~~~~----di~~I~~ia~~~gi~livD~  187 (394)
T PRK07050        127 DFGITVRFYDP-------LI----GAGIADLIQ----PNTRLIWLEAPGSVTMEVP----DVPAITAAARARGVVTAIDN  187 (394)
T ss_pred             hcCeEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCccHh----hHHHHHHHHHHcCCEEEEEC
Confidence            11333322211       11    245666654    2567788886666655444    49999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccCC--cccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNG--IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G--~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L  368 (447)
                      +|.-    |......+ +|  .|+++  ++|.+++|  .+.|++++ ++++++.+.........+.+|..+..++..|
T Consensus       188 a~a~----~~~~~~l~-~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l  258 (394)
T PRK07050        188 TYSA----GLAFKPFE-HG--VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGL  258 (394)
T ss_pred             Cccc----ccccCHHH-cC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC
Confidence            9852    21111111 23  48774  78999854  67888776 5777766543221122344566655544433

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.48  E-value=1.1e-11  Score=126.70  Aligned_cols=311  Identities=14%  Similarity=0.081  Sum_probs=165.0

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~A  174 (447)
                      ..|..||||.+-.++       ..+.+++.+++....   ..| .+....+|++.++++++  .+.+++++||++|+..+
T Consensus        17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd---~~Y~~~~g~~~Leeaia~~~g--~~~vv~t~~Gt~Al~la   84 (431)
T cd00617          17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGD---EAYAGSKSFYDLEDAVQDLFG--FKHIIPTHQGRGAENIL   84 (431)
T ss_pred             CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCC---CccCCCCCHHHHHHHHHHHHC--CCeEEEcCCHHHHHHHH
Confidence            457789999875543       244444455554331   123 35667899999999994  57899999999999999


Q ss_pred             HHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC----cCCCCC--CChHHHHHHHHHHHH
Q 013235          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP----YRGVFG--ADGEMYAKDVQDLID  248 (447)
Q Consensus       175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~----~~~~~~--~d~~~~~~~le~~i~  248 (447)
                      ++...  .+++ +|...+.|...........+..           ..++....    ...+|.  -|    .++|++.+.
T Consensus        85 ~~al~--~pGD-~V~~~~~f~~~~~~i~~~Ga~p-----------v~v~i~~~~~~~~~~pf~gniD----~e~Le~~I~  146 (431)
T cd00617          85 FSILL--KPGR-TVPSNMHFDTTRGHIEANGAVP-----------VDLVIDEAHDAQELIPFKGNID----VAKLEKLID  146 (431)
T ss_pred             HHHhC--CCCC-EEccCCcccchHHHHHhCCCEe-----------EEEecccccccccccCCCCCcC----HHHHHHHhC
Confidence            87542  2334 4444555543322222211111           11111000    011222  34    678888886


Q ss_pred             ccCCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc----------cccCCCcccc-cccCCC
Q 013235          249 FGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF----------ARTGSHFWGF-EAHGVV  316 (447)
Q Consensus       249 ~~~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf----------gr~G~~~~~~-~~~gv~  316 (447)
                      ....+++++|+++ |.+..+|. +.+.+.+++|.++|++||+.||.|+++.-.          |..+....-. -...-.
T Consensus       147 ~~~~~~~~~I~v~~p~N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~  225 (431)
T cd00617         147 EVGAENIPYIVLTITNNTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSY  225 (431)
T ss_pred             cccCCCccEEEEECCcCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhcc
Confidence            4433457777776 45545565 457888999999999999999999996521          1111111000 000113


Q ss_pred             CCEEEee--ccccCCcccc-ccccCH-HHHHhhcCC----cccccCCCC-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013235          317 PDIVTMA--KGIGNGIPLG-AVVTTP-EIAEVLTRR----NYFNTFGGN-PVCTAAGHAVLKVIQKDKLQNNAHVVGSYL  387 (447)
Q Consensus       317 pDivt~s--K~lg~G~pig-av~~~~-~i~~~l~~~----~~~~T~~~n-p~a~aaala~L~~i~~~~l~~~~~~~g~~l  387 (447)
                      -|..+||  |..  +.++| ++++++ ++++.+...    ..+.|++|. +.-+++....|+...+.+.++...+..++|
T Consensus       226 sd~~~mS~~K~~--~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l  303 (431)
T cd00617         226 ADGCTMSAKKDG--LVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYL  303 (431)
T ss_pred             CCEEEEEeecCC--CCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            4666655  332  23444 678875 588776531    123455653 333333322665432223333333333667


Q ss_pred             HHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCcee
Q 013235          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALF  443 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv  443 (447)
                      .+.|++.  ..+++  .+..|.++.++...--....++.-...+++.+|+ +.||.+
T Consensus       304 ~~~L~~~--G~~v~--~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~  356 (431)
T cd00617         304 GDRLDEA--GVPIV--EPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRA  356 (431)
T ss_pred             HHHHHHC--CCCcc--CCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeE
Confidence            6777665  33332  3445667777654210000001001445665554 456764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.48  E-value=2.9e-12  Score=131.54  Aligned_cols=165  Identities=19%  Similarity=0.207  Sum_probs=116.8

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +.+++++||++|+..+++....  .+++||+....|+|........         ..
T Consensus        52 sr~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vl~~~~~y~~t~~~~~~~---------~~  118 (418)
T TIGR01326        52 SRLMNPTTDVLEQRIAALEGG--VAALAVASGQAAITYAILNLAQ--AGDNIVSSSYLYGGTYNLFKHT---------LK  118 (418)
T ss_pred             ECCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHH---------HH
Confidence            466788889999999999853  5678999999999999975532  5678999998887643221110         00


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.    +++++|++|..++++|.+.+    +++|.++|+++|+++|+||
T Consensus       119 ~~G~~v~~v~~-------~d----~~~l~~~l~----~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~  179 (418)
T TIGR01326       119 RLGIEVRFVDP-------DD----PEEFEKAID----ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDN  179 (418)
T ss_pred             HcCcEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            11333322221       13    566777664    25678889988888888876    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEE--EeeccccC-CccccccccCH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTTP  339 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pigav~~~~  339 (447)
                      ++. .+..      .......+|++  +++|.+++ |.++|++++++
T Consensus       180 t~~-~~~~------~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       180 TFA-TPYL------CRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             CCc-hhhc------CCchhcCCeEEEECccccccCCccceEEEEEec
Confidence            985 2211      12223346888  57899997 89999988854

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.47  E-value=3e-12  Score=130.23  Aligned_cols=236  Identities=17%  Similarity=0.121  Sum_probs=143.2

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +.+++++||++|+..++...  ..+++.||+....|.+........         ..
T Consensus        56 ~r~~~p~~~~le~~la~l~g~--~~~v~~ssG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~t~~~~~~~---------~~  122 (390)
T PRK08133         56 SRFTNPTVTMFQERLAALEGA--EACVATASGMAAILAVVMAL--LQAGDHVVSSRSLFGSTVSLFEKI---------FA  122 (390)
T ss_pred             ECCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCcchhHHHHHHHH---------HH
Confidence            456688899999999999854  45788999999999998754  235677887766654332211100         00


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.    .++.+|++|...++.|.+.+    +++|.++|+++|+++|+||
T Consensus       123 ~~G~~v~~vd~-------~d----~~~l~~~i~----~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~  183 (390)
T PRK08133        123 RFGIETTFVDL-------TD----LDAWRAAVR----PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDN  183 (390)
T ss_pred             HcCcEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEEC
Confidence            11332222211       12    456666664    25678889888888888876    8999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-Cccc-cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      ++... ... .     ......|+++  ++|.+++ |.++ |++++++++++.+...........+|..+..++..|+.+
T Consensus       184 t~~~~-~~~-~-----pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl  256 (390)
T PRK08133        184 CFCTP-ALQ-Q-----PLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETL  256 (390)
T ss_pred             CCccc-ccC-C-----chhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchH
Confidence            98422 111 1     1112347775  6799986 6777 667788877665542111122234566666665555433


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCee------------------eEeecceeEEEEEe
Q 013235          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFV  416 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrg~Gl~~giel~  416 (447)
                      ..  ..++..++...+.+.|++    ++.+.                  ...|.|-|+.|++.
T Consensus       257 ~~--R~~~~~~~a~~la~~L~~----~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~  313 (390)
T PRK08133        257 SL--RMEAHSANALALAEWLEA----HPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK  313 (390)
T ss_pred             HH--HHHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence            21  222223333444444433    32221                  13467889999984

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.47  E-value=1.7e-11  Score=122.34  Aligned_cols=250  Identities=16%  Similarity=0.033  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhh-----------cCCCeEEEEcCCcccCchhhhhccCCC
Q 013235          142 AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-----------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (447)
Q Consensus       142 ~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~-----------t~~~~ii~~~~~yHG~~~~~~~~t~~~  208 (447)
                      ...++++.++++++.+  ...++|++||++|+..+++.++..           .+.+.+|+.....|.....+....+. 
T Consensus        39 le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~-  117 (345)
T cd06450          39 MEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDV-  117 (345)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhc-
Confidence            3445556666666542  346889999999999999988642           12244666666666654433322111 


Q ss_pred             CccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235          209 NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (447)
Q Consensus       209 ~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~  286 (447)
                               .+..++...  .  +..|    .++|++.+...  ...++.++++.-..+++|.+.+    +++|.++|++
T Consensus       118 ---------~~~~v~~~~--~--~~~d----~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~  176 (345)
T cd06450         118 ---------KVRLVPVDE--D--GRMD----PEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEK  176 (345)
T ss_pred             ---------CeEEeeeCC--C--CCcC----HHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHH
Confidence                     122232211  1  1134    45666666431  1113444444444555777654    9999999999


Q ss_pred             hCCEEEEeccccCccccCCCcccccccCC-CCCEE--EeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHH
Q 013235          287 AGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (447)
Q Consensus       287 ~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aa  363 (447)
                      +|+++++|++|.++.......... ..++ ..|.+  ++.|.++++.++|+++.+                      ..+
T Consensus       177 ~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------~~~  233 (345)
T cd06450         177 YDLWLHVDAAYGGFLLPFPEPRHL-DFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------ALK  233 (345)
T ss_pred             hCCeEEEechhhHHHhhChhhHHH-hcCccccCEEEEchhHhhCCCcchHHHHHH----------------------HHH
Confidence            999999999997653211000000 0111 35755  466988777777877655                      222


Q ss_pred             HHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC
Q 013235          364 GHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI  439 (447)
Q Consensus       364 ala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~  439 (447)
                      ..++++.+.++   +..++..++.+++.+.|.++    +.+.-+ ...+.++.+.+..+.   .. .....++.+.|.++
T Consensus       234 ~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~iv~f~~~~~~---~~-~~~~~~i~~~L~~~  305 (345)
T cd06450         234 LWATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD----PGFELLGEPNLSLVCFRLKPSV---KL-DELNYDLSDRLNER  305 (345)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEEEEECCcc---hh-hHHHHHHHHHHHhc
Confidence            33344444433   34555666666776666554    222111 123456556553210   00 12345788899999


Q ss_pred             Cceee
Q 013235          440 CALFF  444 (447)
Q Consensus       440 Gvlv~  444 (447)
                      |+++.
T Consensus       306 g~~~~  310 (345)
T cd06450         306 GGWHV  310 (345)
T ss_pred             CCEEE
Confidence            76543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.47  E-value=6e-12  Score=124.18  Aligned_cols=257  Identities=17%  Similarity=0.189  Sum_probs=156.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhc-ccccc--cc---cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTV--LY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~-~~~~~--~~---~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~  173 (447)
                      .|+|..+...      -+|+|.+++...+... +..+.  .+   ......+.++++++.++.+.+.|+|+++|||+|..
T Consensus         3 iYlD~~ATTp------~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl   76 (386)
T COG1104           3 IYLDNAATTP------VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL   76 (386)
T ss_pred             ccccccccCC------CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence            5888776443      4699999999988765 22111  11   23455678888999998878899999999999999


Q ss_pred             HHHHH-Hhhc---CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          174 AIMMA-RLYT---GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       174 Aik~a-r~~t---~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ||+-+ ..+.   +++.||+ ...=|=....++.-      . .....++..++.. . .+.  .|    +++|++.|. 
T Consensus        77 aI~g~~~a~~~~~~~~HIIt-s~iEH~aVl~~~~~------L-e~~g~~Vtyl~V~-~-~G~--v~----~e~L~~al~-  139 (386)
T COG1104          77 AIKGAALAYRNAQKGKHIIT-SAIEHPAVLNTCRY------L-ERQGFEVTYLPVD-S-NGL--VD----LEQLEEALR-  139 (386)
T ss_pred             HHHhhHHhhhcccCCCeEEE-cccccHHHHHHHHH------H-HhcCCeEEEeCCC-C-CCe--Ec----HHHHHHhcC-
Confidence            99953 2221   2445554 33333222222111      1 0011234444321 1 111  12    677887775 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG  329 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G  329 (447)
                         +++..|-+--++++.|++.|    +++|.++|+++|+++.+|-||. +|+.-     .+......|+++||---=+|
T Consensus       140 ---~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip-----i~~~~~~vD~ls~SaHK~~G  206 (386)
T COG1104         140 ---PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP-----IDLEELGVDLLSFSAHKFGG  206 (386)
T ss_pred             ---CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee-----ccccccCcceEEeehhhccC
Confidence               36789999999999999999    9999999999999999999996 76542     22222336999998322223


Q ss_pred             -ccccccccCHHHHHhhcCCcccccC------C-CChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHH
Q 013235          330 -IPLGAVVTTPEIAEVLTRRNYFNTF------G-GNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       330 -~pigav~~~~~i~~~l~~~~~~~T~------~-~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l  394 (447)
                       =.+|++..++.+.  +.+..+++.+      + -|..+.++--+++++..+  +....++..+.++|.++|.+.
T Consensus       207 pkGiGaLyv~~~~~--~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~  279 (386)
T COG1104         207 PKGIGALYVRPGVR--LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEI  279 (386)
T ss_pred             CCceEEEEECCCCc--cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2467887766543  2211122111      1 133333333345554332  234566777777777777665

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=5.2e-11  Score=121.06  Aligned_cols=298  Identities=17%  Similarity=0.155  Sum_probs=191.8

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---c----ccccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---H----STVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~----~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA  170 (447)
                      -.|+|..++      +..+..|.+++.+....+.   |    .........+.+.+++++++++.+ .+.|+|+.+.|+|
T Consensus        23 ~vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a   96 (405)
T COG0520          23 LVYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA   96 (405)
T ss_pred             eEEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence            368886542      3467899999998775542   1    111223446678889999999876 4889999999999


Q ss_pred             HHHHHHHHH-hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe--EeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          171 NELAIMMAR-LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       171 ~e~Aik~ar-~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~--~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      +........ ....++.||+.+--+|....--..+..         ..|.  ..++..+  .+.  .+    .++++.++
T Consensus        97 ln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~---------~~Ga~v~~i~~~~--~g~--~~----~~~~~~~i  159 (405)
T COG0520          97 LNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAK---------RTGAKVRVIPLDD--DGL--LD----LDALEKLI  159 (405)
T ss_pred             HHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHH---------hcCcEEEEEecCC--CCC--cC----HHHHHHhc
Confidence            998887442 234558899988888876654333321         1233  3333221  111  12    45666654


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cc
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~  325 (447)
                      .    +++..|.+.-+.+..|.+.|    +++|.++|+++|+++++|-+|+ ++    +. -++-..+..|.++||  |.
T Consensus       160 ~----~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~----h~-~idv~~l~~Df~afsgHKw  225 (405)
T COG0520         160 T----PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AG----HL-PIDVQELGCDFLAFSGHKW  225 (405)
T ss_pred             C----CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cC----cc-CCCchhcCCCEEEEccccc
Confidence            3    47789999999999999998    9999999999999999999996 32    11 123334456999998  86


Q ss_pred             ccCCccccccccCHHHHHhhcCCc------------ccccC--------CC--ChHHHHHHHHHHHHHhhh---hHHHHH
Q 013235          326 IGNGIPLGAVVTTPEIAEVLTRRN------------YFNTF--------GG--NPVCTAAGHAVLKVIQKD---KLQNNA  380 (447)
Q Consensus       326 lg~G~pigav~~~~~i~~~l~~~~------------~~~T~--------~~--np~a~aaala~L~~i~~~---~l~~~~  380 (447)
                      +.|--.+|.+.+++++.+.+.+..            ...|+        .|  |.....+..++|+.+++.   +..++.
T Consensus       226 l~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e  305 (405)
T COG0520         226 LLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHE  305 (405)
T ss_pred             ccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHH
Confidence            765456799999999998874310            00111        11  223333334566666543   455666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeE----eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDV----RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~v----rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +++.+++.++|.++    +.+.-.    ..++-++.+.+..-         ....+...|.++||.++..
T Consensus       306 ~~L~~~~~~~L~~~----~~v~i~g~~~~~r~~~vsF~v~~~---------~~~dv~~~L~~~gI~vr~g  362 (405)
T COG0520         306 RELTEYLLEGLSEL----PGVEIYGPPDADRGGIVSFNVKGI---------HPHDVATLLDEKGIAVRAG  362 (405)
T ss_pred             HHHHHHHHHHHhcC----CCeEEecCCcccCceEEEEEeCCC---------CHHHHHHHHHhCCeEEEec
Confidence            66666666666554    322211    12455666665321         1467888999999888753

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.47  E-value=1.8e-11  Score=124.08  Aligned_cols=277  Identities=12%  Similarity=0.080  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      ++-.+++.+.+......   ...+...++++.|++.++  .+++++++||++|+..++..+. ...++.||+...+|.+.
T Consensus        11 ~~~~~~~~~~l~~~~~~---g~~~~~~~~e~~la~~~g--~~~~v~~~sgt~al~~~l~~~~-~~~Gd~Viv~~~t~~~~   84 (375)
T PRK11706         11 GTELDYIQQAMSSGKLC---GDGGFTRRCQQWLEQRFG--SAKVLLTPSCTAALEMAALLLD-IQPGDEVIMPSYTFVST   84 (375)
T ss_pred             HHHHHHHHHHHHcCCcc---CCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHhC-CCCCCEEEECCCCcHHH
Confidence            34456676666654221   124566788888998874  4789999999999999887542 23567899988888755


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      .......             |...+..+... ..|..|    .+++++.+..    ++.+|++-  + ..|....    +
T Consensus        85 ~~~~~~~-------------G~~~v~~d~d~-~~~~~d----~~~le~~i~~----~tk~i~~~--~-~~G~~~~----~  135 (375)
T PRK11706         85 ANAFVLR-------------GAKIVFVDIRP-DTMNID----ETLIEAAITP----KTRAIVPV--H-YAGVACE----M  135 (375)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhcCC----CCeEEEEe--C-CCCCccC----H
Confidence            4433222             22222221111 112234    5667776642    34555532  2 3565544    8


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccc-cCCCcccccccCCCCCEEEee----ccccCCccccccccCHHHHHhhcCCc-c-
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFAR-TGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTTPEIAEVLTRRN-Y-  350 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr-~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~~~i~~~l~~~~-~-  350 (447)
                      ++|.++|+++|+++|.|++|+ +|. .+     -...|-.-|+.+||    |.++.|...++++.++++++.+.... + 
T Consensus       136 ~~i~~la~~~~i~vIeD~a~a-~g~~~~-----~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g  209 (375)
T PRK11706        136 DTIMALAKKHNLFVVEDAAQG-VMSTYK-----GRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKG  209 (375)
T ss_pred             HHHHHHHHHcCCEEEEECccc-cccccC-----CeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcC
Confidence            999999999999999999996 442 11     01123334888988    99976655455666777776432210 0 


Q ss_pred             -------------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----hcCC-eeeEee
Q 013235          351 -------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD----KYGI-IGDVRG  406 (447)
Q Consensus       351 -------------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~-i~~vrg  406 (447)
                                         +.++--+.+.++.+++.|+.++  +..++-+++.+++++.|..+..    .++. ......
T Consensus       210 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~--~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  287 (375)
T PRK11706        210 TNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAAD--RINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKH  287 (375)
T ss_pred             CCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCce
Confidence                               1122224567777777787653  3445556666667776665421    0110 011111


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ...++.+.+.+.        ....++.+.|.++||.++.
T Consensus       288 ~~~~~~~~~~~~--------~~r~~l~~~L~~~gI~~~~  318 (375)
T PRK11706        288 NAHMFYIKLRDL--------EDRSALINFLKEAGIMAVF  318 (375)
T ss_pred             eeEEEEEEECCc--------CCHHHHHHHHHHCCCCccc
Confidence            122344444211        1246899999999998753

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.47  E-value=2.3e-12  Score=114.31  Aligned_cols=167  Identities=23%  Similarity=0.213  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEee
Q 013235          143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA  222 (447)
Q Consensus       143 ~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~  222 (447)
                      +.++.+++++.++.+.+.+++++||++|++.+++.++.  .+++|++.++.||+.........            +....
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~------------g~~~~   67 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--PGDEVIVDANGHGSRYWVAAELA------------GAKPV   67 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeecccceehhhHHHhc------------CCEEE
Confidence            35788888888854567789999999999999997753  36789999999988763221111            22222


Q ss_pred             cCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc
Q 013235          223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR  302 (447)
Q Consensus       223 ~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr  302 (447)
                      ..+.........+    .+.+++.   ....+++++++++.++++|...+    +++|.++|+++|+++|+||++.++..
T Consensus        68 ~v~~~~~~~~~~~----~~~~~~~---~~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~  136 (170)
T cd01494          68 PVPVDDAGYGGLD----VAILEEL---KAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGAS  136 (170)
T ss_pred             EeccCCCCccchh----hhhhhhc---cccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccc
Confidence            2211110000000    1123222   22458899999999999888776    59999999999999999999998765


Q ss_pred             cCCCcccccccCCCCCEEEee--ccccCCccccccccC
Q 013235          303 TGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT  338 (447)
Q Consensus       303 ~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~  338 (447)
                      ... .  .......+|+++.|  |.+++ .+.|+++++
T Consensus       137 ~~~-~--~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         137 PAP-G--VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             ccc-c--cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence            431 2  12223458999888  99987 677877653

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.46  E-value=8.3e-12  Score=126.68  Aligned_cols=235  Identities=18%  Similarity=0.111  Sum_probs=148.3

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +.+++++||++|+..++...  ...++.|++...+|++.......+ .         
T Consensus        48 ~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~l--l~~GD~Vlv~~~~y~~~~~~~~~~-~---------  113 (385)
T PRK08574         48 SREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFSL--LKAGDRVVLPMEAYGTTLRLLKSL-E---------  113 (385)
T ss_pred             ECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHh-h---------
Confidence            455678888999999999854  45678899999999998744  335678888888886644322211 0         


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++......        .|    .+++++.+..   .++.+|++|...++.|.+.+    +++|.++|+++|+++|+||
T Consensus       114 ~~g~~v~~~~--------~d----~~~l~~~i~~---~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~  174 (385)
T PRK08574        114 KFGVKVVLAY--------PS----TEDIIEAIKE---GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDN  174 (385)
T ss_pred             ccCcEEEEEC--------CC----HHHHHHhcCc---cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEEC
Confidence            0122211110        12    4567766642   25678889988888898886    8999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-Cccc-ccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPL-GAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-gav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      ++. .+-.. +  ..+ +|  .|+++  ++|.++| |-.+ |++++ ++++.+.+...........+|..++.++..|+.
T Consensus       175 t~a-~~~~~-~--~l~-~G--aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t  247 (385)
T PRK08574        175 TFA-TPLLY-R--PLR-HG--ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT  247 (385)
T ss_pred             CCC-ccccC-C--hhh-hC--CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc
Confidence            984 22111 1  111 33  47775  6799975 4443 53554 677776654322222334568888888777766


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------E--eecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------V--RGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------v--rg~Gl~~giel~  416 (447)
                      +..  ..++..++..++.+.|++    ++.+..                  .  .|.|-|+.|++.
T Consensus       248 L~~--R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~  307 (385)
T PRK08574        248 LEV--RFERQCRNAMAIAEFLSE----HPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVK  307 (385)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHc----CCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeC
Confidence            532  333344455555555543    332221                  1  257889999995

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.45  E-value=3e-12  Score=129.38  Aligned_cols=255  Identities=15%  Similarity=0.089  Sum_probs=153.2

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      +..+|...+|+++|+++.+.  +.+++++||++|+.+++...  ...++.||+.++.|++.....-...         ..
T Consensus        46 r~gnPt~~~lE~~lA~l~g~--~~~~~~~sG~~Ai~~al~al--l~~GD~Vl~~~~~y~~t~~~~~~~~---------~~  112 (377)
T TIGR01324        46 RRGTLTHFALQDAMCELEGG--AGCYLYPSGLAAVTNSILAF--VKAGDHVLMVDSAYEPTRYFCDIVL---------KR  112 (377)
T ss_pred             CCCCccHHHHHHHHHHHhCC--CcEEEECcHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHHHHH---------Hh
Confidence            34567788899999998753  56889999999999999744  3356788889999986433211100         00


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .++...... +      .+    .+++++.+.    .++.+|++|.+.++.|.+.+    +++|.++|+++|+++|+||+
T Consensus       113 ~gi~v~~~d-~------~~----~e~l~~~i~----~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t  173 (377)
T TIGR01324       113 MGVDITYYD-P------LI----GEDIATLIQ----PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNT  173 (377)
T ss_pred             cCcEEEEEC-C------CC----HHHHHHhcC----CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECC
Confidence            122211110 0      11    245666554    25678999988888887776    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEE--eeccccC--CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~  372 (447)
                      |. +|... +     -.....|+++  ++|.++|  +.-.|+++++++..+.+...........+|..+...+..|+.+.
T Consensus       174 ~a-~g~~~-~-----pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~  246 (377)
T TIGR01324       174 WA-AGLLF-K-----PLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG  246 (377)
T ss_pred             Cc-ccccc-C-----ccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHH
Confidence            96 33322 1     1123458886  4799985  36678888888877665532222222345766666666665442


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH---H-hcCCe----------eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh
Q 013235          373 KDKLQNNAHVVGSYLKERLTALK---D-KYGII----------GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG  438 (447)
Q Consensus       373 ~~~l~~~~~~~g~~l~~~L~~l~---~-~~~~i----------~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~  438 (447)
                      -  .+++..+....+.+.|++-.   + .|+.+          ....|.|-|+.|++...      ..+.+.+|++.|.-
T Consensus       247 ~--R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~------~~~~~~~~~~~l~~  318 (377)
T TIGR01324       247 V--RLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL------TQKQVHAFLDHLQL  318 (377)
T ss_pred             H--HHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC------CHHHHHHHHHhCCc
Confidence            1  12333333333333333210   0 11111          11236788999998521      12345667776653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.45  E-value=1.4e-11  Score=125.06  Aligned_cols=278  Identities=13%  Similarity=0.090  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      ++-.+++.+.++....    +..+...+|+++|++++..  +.+++++||++|+.++++... ...+++||+...+|.+.
T Consensus        14 ~~e~~~~~~~l~~~~~----~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~lal~al~-~~~Gd~Viv~~~~~~~~   86 (379)
T PRK11658         14 DEELAAVKEVLRSGWI----TTGPKNQALEQAFCQLTGN--QHAIAVSSATAGMHITLMALG-IGPGDEVITPSLTWVST   86 (379)
T ss_pred             HHHHHHHHHHHHcCCc----cCCHhHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcC-CCCCCEEEECCCcHHHH
Confidence            5567777777765422    3467788999999999854  567889999999999997542 23567899989888765


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      .......             |...+..+... ..|..|    .+++++.+.   + ++.+|+  |++. .|...+    +
T Consensus        87 ~~~~~~~-------------G~~~v~vd~~~-~~~~~d----~~~l~~~i~---~-~tkav~--~~~~-~G~~~d----~  137 (379)
T PRK11658         87 LNMIVLL-------------GATPVMVDVDR-DTLMVT----PEAIEAAIT---P-RTKAII--PVHY-AGAPAD----L  137 (379)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhcc---c-CCeEEE--EeCC-CCCcCC----H
Confidence            4332211             22222222111 112223    566777664   2 445555  3332 455544    8


Q ss_pred             HHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee--ccccCCccccccccC-HHHHHhhcCCc-c--
Q 013235          278 PAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRN-Y--  350 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~-~~i~~~l~~~~-~--  350 (447)
                      ++|.++|+++|+++|+|++|+ |.-..| ..  ...+|.  ++.+|+  |.+++| +-|+++++ +++.+.+.... +  
T Consensus       138 ~~i~~~a~~~gi~vi~D~a~a~g~~~~~-~~--~g~~g~--~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~  211 (379)
T PRK11658        138 DAIRAIGERYGIPVIEDAAHAVGTYYKG-RH--IGARGT--AIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGL  211 (379)
T ss_pred             HHHHHHHHHcCCeEEEECCCccCCeECC-ee--cCCCCC--EEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCC
Confidence            999999999999999999997 332223 11  122343  666666  777654 45666764 67765543210 0  


Q ss_pred             ---------------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCeeeEeecc
Q 013235          351 ---------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YGIIGDVRGRG  408 (447)
Q Consensus       351 ---------------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~~~i~~vrg~G  408 (447)
                                           +..+.-+.+..|.++..|+.++  +..++-+++.+++++.|.++.-. ...... .+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~--~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~-~~~~  288 (379)
T PRK11658        212 GVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLE--ALNARRREIAARYLQALADLPFQPLSLPAW-PHQH  288 (379)
T ss_pred             CcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCccCcCCCC-CCce
Confidence                                 0112234566666667776553  35677777788888877664100 000000 0111


Q ss_pred             --eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          409 --FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       409 --l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                        .+..+.+....     ......++.+.|.++||-++.
T Consensus       289 ~~~~~~~~~~~~~-----~~~~r~~~~~~L~~~gI~~~~  322 (379)
T PRK11658        289 AWHLFIIRVDEER-----CGISRDALMEALKERGIGTGL  322 (379)
T ss_pred             eEEEEEEEECCcc-----ccCCHHHHHHHHHHCCCCCcc
Confidence              12223332110     001246789999999987653

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.45  E-value=1.3e-11  Score=125.89  Aligned_cols=236  Identities=19%  Similarity=0.117  Sum_probs=148.7

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +..++++||++|+..++...  ...++.|++..++|++.........         .
T Consensus        55 ~R~~~p~~~~Le~~lA~l~g~--~~~v~~~sG~~Ai~~~l~al--l~pGD~Vvv~~p~Y~~t~~~~~~~~---------~  121 (405)
T PRK08776         55 TRSGNPTRDLLGEALAELEGG--AGGVITATGMGAINLVLNAL--LQPGDTLVVPHDAYGGSWRLFNALA---------K  121 (405)
T ss_pred             cCCCChHHHHHHHHHHHHhCC--CceEEEcCHHHHHHHHHHHH--hCCCCEEEEccCCchHHHHHHHHHH---------H
Confidence            567788888999999998754  33467888999998888754  2356789998999975332111110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++..+..+.       .|    .+++++.+.   + ++.+|++|..+++.|.+..    +++|.++|+++|+++|+||
T Consensus       122 ~~g~~v~~v~~-------~d----~~~l~~~i~---~-~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~  182 (405)
T PRK08776        122 KGHFALITADL-------TD----PRSLADALA---Q-SPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDN  182 (405)
T ss_pred             hcCcEEEEECC-------CC----HHHHHHhcC---c-CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEEC
Confidence            11233222221       12    456666664   2 4567777776777887755    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC--Ccccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      +|..-...    ...+   ...|+++  .+|.+++  ++..|++++ ++++.+.+........+..+|+.+.+.+..|+.
T Consensus       183 a~a~~~~~----~pl~---~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~t  255 (405)
T PRK08776        183 TFLSPALQ----KPLE---FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRT  255 (405)
T ss_pred             CCcccccC----Cccc---ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCc
Confidence            98632111    1111   2348875  5599974  366787766 567766554322223345689999888877776


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee------------------eEeecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrg~Gl~~giel~  416 (447)
                      ++.  ..++..++...+.+.|++    ++.+.                  ...|.|-|+.|++.
T Consensus       256 l~~--r~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~  313 (405)
T PRK08776        256 LDA--RLRVHQENADAIAALLDG----HAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE  313 (405)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence            532  344444455554444443    23222                  12577889999995

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.45  E-value=5.6e-12  Score=128.21  Aligned_cols=241  Identities=16%  Similarity=0.067  Sum_probs=152.4

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..+|.++...+|+++|+++...  +.+++++||++|+..++...  ...++.|++..+.|.+.........         
T Consensus        53 y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~~l~al--~~~Gd~Vi~~~~~y~~t~~~~~~~~---------  119 (391)
T TIGR01328        53 YSRLGNPTVSNLEGRIAFLEGT--EAAVATSSGMGAIAATLLTI--LKAGDHLISDECLYGCTFALLEHAL---------  119 (391)
T ss_pred             eeCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEecCcchHHHHHHHHHH---------
Confidence            3567788889999999999854  45788999999999888644  2356778887776643322111110         


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                      ...|+.....+.       .|    .+++++.+.   + ++.+|++|...++.|.+.+    +++|.++|+++|+++|+|
T Consensus       120 ~~~G~~~~~vd~-------~d----~e~l~~~i~---~-~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD  180 (391)
T TIGR01328       120 TKFGIQVDFINM-------AI----PEEVKAHIK---D-NTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVD  180 (391)
T ss_pred             hcCCeEEEEECC-------CC----HHHHHHhhc---c-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEE
Confidence            011333222211       12    456666654   2 5678888887888888776    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEE--eeccccC-Ccc-ccccccCHHHHHhhcCCcc--cccCCCChHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIP-LGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~p-igav~~~~~i~~~l~~~~~--~~T~~~np~a~aaala~L  368 (447)
                      |++. .+..+ .     ..+...|+++  ++|.+++ |.+ .|++++++++++.+.....  ......+|..++.++..|
T Consensus       181 ~a~a-~~~~~-~-----~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L  253 (391)
T TIGR01328       181 NTFA-TPMLT-N-----PVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGL  253 (391)
T ss_pred             CCCc-hhccC-C-----chhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCc
Confidence            9985 22222 1     1223467775  6799985 655 5778888998876653211  112334677888777777


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHH----hcCCe----------eeEeecceeEEEEEe
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKD----KYGII----------GDVRGRGFLLGVEFV  416 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~i----------~~vrg~Gl~~giel~  416 (447)
                      +.+.  ...++..++.+++.+.|++...    .||..          ...+|.|-|+.|++.
T Consensus       254 ~tl~--~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~  313 (391)
T TIGR01328       254 KTLN--IRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK  313 (391)
T ss_pred             CcHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence            5543  2345556666666666654310    01111          113466889999984

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.45  E-value=5.1e-12  Score=128.94  Aligned_cols=252  Identities=13%  Similarity=0.076  Sum_probs=159.1

Q ss_pred             ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      ...+|+++...+|+++|+++...  +.+++++||++|+..++...  ...++.||+..+.|. .+.......        
T Consensus        57 ~Y~r~~~p~~~~Le~~iA~~~g~--~~~l~~~sG~~Ai~~al~~l--l~~Gd~Vl~~~~~y~-~~~~~~~~~--------  123 (400)
T PRK06234         57 IYSRLGNPTSTEVENKLALLEGG--EAAVVAASGMGAISSSLWSA--LKAGDHVVASDTLYG-CTFALLNHG--------  123 (400)
T ss_pred             cccCCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHH--hCCCCEEEEecCccc-hHHHHHHHH--------
Confidence            34566788899999999999864  46789999999999888633  235577887776654 333222100        


Q ss_pred             ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh--CCEE
Q 013235          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLC  291 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~--g~ll  291 (447)
                      ....|+.....+.       .|    .+++++.+..    ++.+|++|...+++|.+.+    +++|.++|+++  |+++
T Consensus       124 ~~~~G~~v~~vd~-------~d----~e~l~~~i~~----~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~l  184 (400)
T PRK06234        124 LTRYGVEVTFVDT-------SN----LEEVRNALKA----NTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLV  184 (400)
T ss_pred             HhhCCeEEEEECC-------CC----HHHHHHHhcc----CCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEE
Confidence            0011333322221       13    4667776642    4678888888888888776    99999999997  9999


Q ss_pred             EEeccccCccccCCCcccccccCCCCCEEE--eeccccC-Cccc-cccccCHHHHHhhcCC--cccccCCCChHHHHHHH
Q 013235          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPL-GAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       292 I~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-gav~~~~~i~~~l~~~--~~~~T~~~np~a~aaal  365 (447)
                      |+||++... ..+ ..     .+...|+++  ++|.+++ |.++ |++++++++++.+...  ....+...+|..++.++
T Consensus       185 ivDea~~~~-~~~-~~-----l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~  257 (400)
T PRK06234        185 FVDNTFCTP-YIQ-RP-----LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLII  257 (400)
T ss_pred             EEECCCCch-hcC-Cc-----hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            999998632 222 11     122457775  6799986 6665 8899999988876532  11234556788888888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------EeecceeEEEEEeeCCCCCCCCHH
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKA  427 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~Gl~~giel~~~~~~~~p~~~  427 (447)
                      ..|+.+.  ...++..++..++.+.|++    ++.+..                  ..|.|-|+.|++..+       .+
T Consensus       258 ~~l~tl~--~r~~~~~~na~~~a~~L~~----~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-------~~  324 (400)
T PRK06234        258 RGMKTLQ--IRMEKHCKNAMKVAKFLES----HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-------VE  324 (400)
T ss_pred             hccCcHH--HHHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-------HH
Confidence            7776442  2334444555555555543    232211                  235677888988422       12


Q ss_pred             HHHHHHHHHH
Q 013235          428 ETLYIMDKMK  437 (447)
Q Consensus       428 ~~~~~~~~l~  437 (447)
                      .+.+|.+.|.
T Consensus       325 ~~~~f~~~l~  334 (400)
T PRK06234        325 EGKVVMNNVK  334 (400)
T ss_pred             HHHHHHHhCC
Confidence            3456666554

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.45  E-value=1.3e-11  Score=125.58  Aligned_cols=236  Identities=19%  Similarity=0.092  Sum_probs=146.3

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++...  +..+.++||++|+.++++...  ..+++||+..+.|.+.........         .
T Consensus        56 ~r~~~p~~~~Le~~lA~~~g~--~~~i~~~sG~~Ai~~~l~all--~~Gd~Vl~~~~~y~~t~~~~~~~~---------~  122 (388)
T PRK07811         56 ARTGNPTRTALEEQLAALEGG--AYGRAFSSGMAATDCLLRAVL--RPGDHIVIPNDAYGGTFRLIDKVF---------T  122 (388)
T ss_pred             cCCCCccHHHHHHHHHHHhCC--CceEEeCCHHHHHHHHHHHHh--CCCCEEEEcCCCchHHHHHHHHhC---------c
Confidence            456678889999999999854  334566899999999997653  356789998888864332211110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++.....+.       .|    .+++++.+..    ++.+|++|...++.|.+..    +++|.++|+++|+++|+||
T Consensus       123 ~~gi~~~~~d~-------~d----~e~l~~~i~~----~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~  183 (388)
T PRK07811        123 RWGVEYTPVDL-------SD----LDAVRAAITP----RTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDN  183 (388)
T ss_pred             CCCeEEEEeCC-------CC----HHHHHHhcCc----CCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEEC
Confidence            11332222111       12    4667666642    5678888877777777765    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      ++... ..+ .     ..+...|+++  ++|.+++ | ...|+++++ +++.+.+...........+|..+..++..|+.
T Consensus       184 a~a~~-~~~-~-----p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t  256 (388)
T PRK07811        184 TFASP-YLQ-Q-----PLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT  256 (388)
T ss_pred             CCCcc-ccC-C-----chhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc
Confidence            98632 222 1     1123458775  6699986 3 567887765 66665544211111223457776666666654


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------EeecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~Gl~~giel~  416 (447)
                      +.  ...++..++...+.+.|++    ++.+..                  ..|.|-|+.|+|.
T Consensus       257 l~--~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~  314 (388)
T PRK07811        257 LA--VRMDRHSENAEAVAEFLAG----HPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA  314 (388)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence            32  2334444555555555543    333321                  2467889999995

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.44  E-value=2.8e-11  Score=117.81  Aligned_cols=284  Identities=20%  Similarity=0.228  Sum_probs=169.0

Q ss_pred             CCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      |+.|...+|+++-+....-  +                ...-+.+++.++++++.|||..+.....  +++..++..+-|
T Consensus       121 ~Gl~~frqa~A~Fm~~~r~--~----------------~v~fdP~~~Vv~~G~T~ane~l~fcLad--pgdafLvPtPyY  180 (471)
T KOG0256|consen  121 HGLPSFRQAVAEFMERARG--N----------------RVKFDPERVVVTNGATSANETLMFCLAD--PGDAFLVPTPYY  180 (471)
T ss_pred             cCchHHHHHHHHHHHHHhC--C----------------CCccCccceEEecccchhhHHHHHHhcC--CCceeeecCCCC
Confidence            6678888888777765411  0                1112456788999999999987754332  567778888888


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~  274 (447)
                      -|.....       .|+     .|+..+|..-.....|..+.+.+.+++++.....  .++.++|+---+++=|.+ .++
T Consensus       181 ~gfdrdl-------~~r-----Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~--~kVkGvlitNPsNPLG~~-~~~  245 (471)
T KOG0256|consen  181 PGFDRDL-------RWR-----TGVEIVPVHCSSSNGFQITVEALEAALNQARKLG--LKVKGVLITNPSNPLGTT-LSP  245 (471)
T ss_pred             Ccccccc-------eec-----cCceEEEEEeecCCCccccHHHHHHHHHHHHHhC--CceeEEEEeCCCCCCCCc-cCH
Confidence            6663221       111     3666666543333445556555555666555432  356655554334444444 478


Q ss_pred             ChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cc---cCCCCCEE----Eeecccc-CCccccccccC-HHHHHh
Q 013235          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EA---HGVVPDIV----TMAKGIG-NGIPLGAVVTT-PEIAEV  344 (447)
Q Consensus       275 ~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~---~gv~pDiv----t~sK~lg-~G~pigav~~~-~~i~~~  344 (447)
                      +-|..+.+.+.++++-+|+||||+|--...++|-.+ +.   ....||-|    .+||=+| .|+++|++... +++...
T Consensus       246 e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~Vvsa  325 (471)
T KOG0256|consen  246 EELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSA  325 (471)
T ss_pred             HHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHH
Confidence            889999999999999999999999843333234333 21   12256644    6899999 79999999865 555554


Q ss_pred             hcCCcccccCC-CChHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEE
Q 013235          345 LTRRNYFNTFG-GNPVCTAAGHAVLKVIQKDKLQ--------NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (447)
Q Consensus       345 l~~~~~~~T~~-~np~a~aaala~L~~i~~~~l~--------~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel  415 (447)
                      ..+-   +.|+ .++..+-....-|   .++.+.        .+++..-+++-++|+++    ++..--++.|+|+++++
T Consensus       326 A~km---ssf~~vSs~tQ~~la~LL---SD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l----gI~cl~s~AGlF~wvDl  395 (471)
T KOG0256|consen  326 ATKM---SSFGLVSSQTQYLLASLL---SDEEFTREYLRENNKRLRIRHRYIVEGLKAL----GIPCLKSNAGLFCWVDL  395 (471)
T ss_pred             HHHH---hhccCCcHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHHhhHHhc----CCceeecCCeeEEEEEh
Confidence            4432   3333 2344444333333   333322        23333334444445444    55556688899999999


Q ss_pred             eeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          416 VTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       416 ~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      ..-=.+.+-  +.-.++++.++++ +|.+.+
T Consensus       396 r~lL~s~tf--e~El~Lw~~i~~~vklnlSp  424 (471)
T KOG0256|consen  396 RKLLTSLTF--EGELELWERILDNVKLNLSP  424 (471)
T ss_pred             HHhcCcCCh--HHHHHHHHHHHHhhccccCC
Confidence            532111111  1123577777777 877764

>PRK05968 hypothetical protein; Provisional

Probab=99.44  E-value=7.9e-12  Score=127.08  Aligned_cols=251  Identities=17%  Similarity=0.093  Sum_probs=153.6

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++++++.+.  +..++++||+.|+..++...  ...+++||+....|++........         ..
T Consensus        58 ~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~~y~~t~~~~~~~---------~~  124 (389)
T PRK05968         58 SRGDNPTVRAFEEMLAKLEGA--EDARGFASGMAAISSTVLSF--VEPGDRIVAVRHVYPDAFRLFETI---------LK  124 (389)
T ss_pred             cCCCChhHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHH---------HH
Confidence            456678889999999999854  34566799999999988643  335678999988887543211110         00


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.     ++.+|++|...+..+.+.    -+++|.++|+++|+++|+|+
T Consensus       125 ~~G~~v~~vd~-------~d----~~~l~~~i~-----~tklV~ie~pt~~~~~~~----dl~~i~~la~~~gi~vivD~  184 (389)
T PRK05968        125 RMGVEVDYVDG-------RD----EEAVAKALP-----GAKLLYLESPTSWVFELQ----DVAALAALAKRHGVVTMIDN  184 (389)
T ss_pred             HcCceEEEeCC-------CC----HHHHHHhcc-----cCCEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEEC
Confidence            11222221110       12    456666552     345777886555544443    49999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcc-cccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~-~~T~~~np~a~aaala~L~~  370 (447)
                      ++..+. .. .  ..+ +|  .|+++  ++|.+++ | ...|+++.++++++.+..... ..-...+|..++.++..|+.
T Consensus       185 a~a~~~-~~-~--p~~-~g--~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t  257 (389)
T PRK05968        185 SWASPV-FQ-R--PIT-LG--VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRT  257 (389)
T ss_pred             CCcchh-cc-C--chh-cC--CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCc
Confidence            985331 11 1  111 23  37775  6799986 3 567888889988776653211 11123468888887777765


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-------------ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-------------GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-------------g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~  437 (447)
                      +  +...++-.+..+++.+.|++    ++.+..|.             |.|.|+.+++.+        ...+.++++.|.
T Consensus       258 l--~~r~~~~~~~a~~la~~L~~----~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~--------~~~~~~f~~~L~  323 (389)
T PRK05968        258 L--PLRMKAHEASALEIARRLKA----HPVVERVCHPALANHPPAGLSGTSGLFSFIFRE--------GIDVRAFADALK  323 (389)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCChHHhCCCCceEEEEEECC--------HHHHHHHHHhCC
Confidence            5  22333344446666665544    44444443             667788899842        123456777765


Q ss_pred             hCC
Q 013235          438 GIC  440 (447)
Q Consensus       438 ~~G  440 (447)
                      ..+
T Consensus       324 ~~~  326 (389)
T PRK05968        324 LFR  326 (389)
T ss_pred             ccE
Confidence            544

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.43  E-value=5.7e-11  Score=123.38  Aligned_cols=293  Identities=13%  Similarity=0.011  Sum_probs=156.1

Q ss_pred             CCCHHHHHHHHHHH-Hhccccc--cccc--chHHHHH---HHH-HHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhc
Q 013235          115 HCHPYVVDSIVNQI-KRIQHST--VLYL--NHAIADF---AEA-LASKMPGNLKVVFF---TNSGTEANELAIMMARLYT  182 (447)
Q Consensus       115 h~~p~v~~A~~~~l-~~~~~~~--~~~~--~~~~~el---ae~-L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t  182 (447)
                      +..|.|.+|+...+ +++..+.  .+|.  +..+.++   +.+ ..+.+....+.+.+   .+||+.||.+++....  .
T Consensus        45 ~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~--~  122 (475)
T PLN03226         45 FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL--Q  122 (475)
T ss_pred             cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC--C
Confidence            35689999998888 6654322  2222  2233333   332 34445443333322   3899999999997543  2


Q ss_pred             CCCeEEEEcCC-----cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          183 GCNDIISLRNA-----YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       183 ~~~~ii~~~~~-----yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      +++.|++.+-.     .|++......++....+        +..++++.... ....|    .++|++++.+..   +..
T Consensus       123 pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~--------~~~~~y~~~~~-~g~iD----~d~Le~~l~~~~---pkl  186 (475)
T PLN03226        123 PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIY--------FESMPYRLDES-TGLID----YDKLEKKAMLFR---PKL  186 (475)
T ss_pred             CCCEEEECCCCcCcchhhhhhhcccccccceEE--------EEeeeeeecCC-CCCcC----HHHHHHHHhhcC---CeE
Confidence            56777764431     13322211111111000        01111100000 00013    678888776432   334


Q ss_pred             EEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCccccc
Q 013235          258 FLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGA  334 (447)
Q Consensus       258 vi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~piga  334 (447)
                      ||+ +.+.++   ..+    +++|+++|+++|++|++|++|. +|-.+..... ..++ ..|+++  +.|+|.|-. =|+
T Consensus       187 Iv~~~S~~s~---~~D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~-~p~~-~~Div~~t~hK~L~GP~-Gg~  255 (475)
T PLN03226        187 IIAGASAYPR---DWD----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAA-SPFE-YCDVVTTTTHKSLRGPR-GGM  255 (475)
T ss_pred             EEEecCcCCC---ccC----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCC-CCCC-CCeEEEecCcccccCCC-ceE
Confidence            455 655443   233    7899999999999999999995 6554422211 1122 468885  669995411 145


Q ss_pred             cccCHHHH-----------Hh---hcCCcc-cccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHH
Q 013235          335 VVTTPEIA-----------EV---LTRRNY-FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       335 v~~~~~i~-----------~~---l~~~~~-~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      +++++++.           +.   +....+ ..+-+-++...++..++|+.+.++   .+.+++.++.++|++.|.+.  
T Consensus       256 I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~--  333 (475)
T PLN03226        256 IFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK--  333 (475)
T ss_pred             EEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC--
Confidence            66676543           22   221111 122223466666677789988654   36788999999999988774  


Q ss_pred             hcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       397 ~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .+.++..-. ..-+..|++....       ....++.+.|.+.||++.++
T Consensus       334 G~~l~~~~t-~~hi~lv~~~~~g-------i~~~~~~~~L~~~~I~~nk~  375 (475)
T PLN03226        334 GYKLVTGGT-DNHLVLWDLRPLG-------LTGSRVEKVLDLAHITLNKN  375 (475)
T ss_pred             CCEEEcCCC-CCCEEEEEccCCC-------CCHHHHHHHHHHCCCEECCC
Confidence            343332100 1244455552211       11345667777889988754

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.42  E-value=2.6e-11  Score=122.89  Aligned_cols=234  Identities=18%  Similarity=0.121  Sum_probs=146.0

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++..  .+.+++++||++|+..++....  ..++.|++..++|.+.........         .
T Consensus        48 ~R~~npt~~~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~all--~~Gd~Il~~~~~y~~~~~~~~~~~---------~  114 (388)
T PRK08861         48 TRSGNPNRGLLEQTLSELES--GKGAVVTNCGTSALNLWVSALL--GPDDLIVAPHDCYGGTYRLFNTRA---------N  114 (388)
T ss_pred             cCCCCchHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHc--CCCCEEEEcCCchHHHHHHHHHHH---------h
Confidence            56778899999999999985  4789999999999999997542  356788888888854332111110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++.....+.       .|    .+++++.+.   + ++.+|++|...+++|.+.+    +++|.++|+++|+++|+||
T Consensus       115 ~~gi~v~~vd~-------~d----~e~l~~~i~---~-~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDe  175 (388)
T PRK08861        115 KGDFKVQFVDQ-------SD----AAALDAALA---K-KPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDN  175 (388)
T ss_pred             cCCeEEEEECC-------CC----HHHHHHhcC---c-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEEC
Confidence            11333322211       12    456666654   2 5678888877788888876    8999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC--CccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      +|... . .     ......-.|+++  +.|-++|  +...|+++++ +++.+.+........-..+|..+...+..|+.
T Consensus       176 a~~~~-~-~-----~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T  248 (388)
T PRK08861        176 TFLTP-V-L-----QKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT  248 (388)
T ss_pred             Ccccc-c-c-----CCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC
Confidence            98621 0 1     111223468886  5599986  3567777764 55655443211112233457777766655544


Q ss_pred             Hh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCee------------------eEeecceeEEEEEe
Q 013235          371 IQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFV  416 (447)
Q Consensus       371 i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrg~Gl~~giel~  416 (447)
                      +.  =+...+++.++.++|.        .++.+.                  ...|.|-|+.|++.
T Consensus       249 l~lR~~~~~~~a~~~a~~L~--------~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~  306 (388)
T PRK08861        249 LGARMRVHEESAQQILAYLQ--------TQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA  306 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------hCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence            32  1223344444444443        233221                  23477889999985

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.42  E-value=1.9e-11  Score=124.85  Aligned_cols=236  Identities=16%  Similarity=0.091  Sum_probs=151.0

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +..+.++||+.|+..+++..  ...+++||+..+.| |.+.......        ..
T Consensus        60 ~r~~~p~~~~le~~lA~l~g~--~~~i~~~sG~~Al~~~l~~l--l~~Gd~Viv~~~~y-~~t~~~~~~~--------~~  126 (403)
T PRK07503         60 SRISNPTLALLEQRMASLEGG--EAAVALASGMGAITATLWTL--LRPGDEVIVDQTLY-GCTFAFLHHG--------LG  126 (403)
T ss_pred             eCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHH--cCCCCEEEEccCcc-chHHHHHHHH--------Hh
Confidence            456788889999999998864  34577889999999998743  34567888877766 4433222110        01


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+..    ++.+|++|..+++.|.+.+    +++|.++|+++|+++|+|+
T Consensus       127 ~~G~~v~~vd~-------~d----~~~l~~~i~~----~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~  187 (403)
T PRK07503        127 EFGVTVRHVDL-------TD----PAALKAAISD----KTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDN  187 (403)
T ss_pred             hCCEEEEEeCC-------CC----HHHHHHhcCc----cCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEEC
Confidence            12333322211       12    4567766642    5678888888888888876    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~  369 (447)
                      +|... ..+ ..     .+...|+++  ++|.+++ | ...|+++.++++++.+...  ........+|+.++.++..|+
T Consensus       188 a~a~~-~~~-~~-----l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~  260 (403)
T PRK07503        188 TYCTP-YLQ-RP-----LELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK  260 (403)
T ss_pred             CCccc-ccC-Cc-----hhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc
Confidence            99632 222 11     223457775  6799996 5 6789899889888776521  112235567888888888877


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee------------------eEeecceeEEEEEe
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFV  416 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrg~Gl~~giel~  416 (447)
                      .+..  ..++..++...+.+.|++    ++.+.                  ..+|.|-|+.+++.
T Consensus       261 tl~~--r~~~~~~na~~~a~~L~~----~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~  319 (403)
T PRK07503        261 TLAL--RMDRHCASAQAVAEWLAR----HPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELK  319 (403)
T ss_pred             hHHH--HHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEC
Confidence            6532  222223444444444443    22221                  12356888888884

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.41  E-value=2.1e-11  Score=117.98  Aligned_cols=299  Identities=18%  Similarity=0.136  Sum_probs=167.4

Q ss_pred             EEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh
Q 013235          102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY  181 (447)
Q Consensus       102 lD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~  181 (447)
                      +||-|..+.   | .+|++.+|+.+.-. . .....+.++...++.+++++.+..  ..++|+.|||.||..||....  
T Consensus         2 ~~f~SDn~~---g-~~~~m~eam~~a~~-~-~~~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~--   71 (342)
T COG2008           2 IDFRSDNVA---G-PTPEMREALAAANA-V-GDDVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHC--   71 (342)
T ss_pred             CccccCccC---C-CCHHHHHHHHhccc-c-CCCCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhc--
Confidence            577666554   3 78999999987543 1 222334577888999999999854  789999999999999998443  


Q ss_pred             cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc---CCCCeEEE
Q 013235          182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVAGF  258 (447)
Q Consensus       182 t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~---~~~~~aav  258 (447)
                       .+...+.....-|-.+..+-+...         ..++...+......+.  .+    +++++..+...   .. ....+
T Consensus        72 -~~~~~vi~~~~aHi~~~E~Ga~~~---------~~~~~~~~~~~g~~Gk--lt----~e~v~~~i~~~d~~~~-~~~~~  134 (342)
T COG2008          72 -QPGESVICHETAHIYTDECGAPEF---------FGGGQKLPIVPGADGK--LT----PEDVEAAIRPDDIHHA-PTPLA  134 (342)
T ss_pred             -CCCCeEEEeccccceecccCcHHH---------HcCCceeccCCCCCCC--cC----HHHHHHhhcCCCcccC-CCceE
Confidence             445555555555644432211000         0122222211111111  12    56777665531   12 34455


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc--ccCCCcccccccCCCCCEEEeeccccCCccccccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV  336 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg--r~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~  336 (447)
                      +.|.-..++|.+. |.++|++|.++|++||+.|-+|-+--.-.  -.|.   ....+.---|+++++=.-++|.|.++|+
T Consensus       135 ~~e~~~te~GtVy-~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~---~~~~~~~~~D~v~~~~tK~g~~~~gAiv  210 (342)
T COG2008         135 VLENTATEGGTVY-PLDELEAISAVCKEHGLPLHMDGARLANALVALGV---ALKTIKSYVDSVSFCLTKGGGAPVGAIV  210 (342)
T ss_pred             EEeeccCCCceec-CHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCC---CHHHHHhhCCEEEEecccCCcceeeeEE
Confidence            5555555878765 89999999999999999999996531100  0110   1112223458887665555678888876


Q ss_pred             -cCHHHHHhhcC--CcccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235          337 -TTPEIAEVLTR--RNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (447)
Q Consensus       337 -~~~~i~~~l~~--~~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~  410 (447)
                       +++++++.+..  +..+.-+.-.-+-.++++..|+   ++   ....|..++.++|.++|.+.   .+.-...+..-+|
T Consensus       211 ~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~---~~~~~~~~~Han~mA~~La~~~~~~---~G~~~~~~~~tN~  284 (342)
T COG2008         211 FGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALE---DDVWRLAADHANAMAARLAEGLEAK---PGVKLAFPVETNM  284 (342)
T ss_pred             EcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhhhc---CCceeccCCcccE
Confidence             68888776643  2233333333344455555553   22   12344555577777776643   1211122244566


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +-+.+.+.       .....+....+..+|+++.
T Consensus       285 vf~~l~~~-------~i~~l~~~~~~~~~~~~~~  311 (342)
T COG2008         285 VFVRLPES-------AIEALRLAGALFYRGVLIG  311 (342)
T ss_pred             EEEECChH-------HHHHHHhhchhheeeeecc
Confidence            66665221       0122334445566666554

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.41  E-value=1e-10  Score=116.18  Aligned_cols=244  Identities=20%  Similarity=0.236  Sum_probs=157.2

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      .+|+|.+|+.++.-  .|.+..| .....+..++|...+... .+.+++..||+-|+|+|+.-.-  .+.++|+++.++.
T Consensus        16 v~~~V~~am~~~~~--~h~s~~F-~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~--~pgdkVLv~~nG~   90 (383)
T COG0075          16 VPPRVLLAMARPMV--GHRSPDF-VGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV--EPGDKVLVVVNGK   90 (383)
T ss_pred             CCHHHHHHhcCCCC--CCCCHHH-HHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc--CCCCeEEEEeCCh
Confidence            35888888765432  2433322 456677888888888654 3678888999999999996332  3678999998888


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-CCCeEEEEEccccCCCceeeCC
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      .|....=+.-...         ..++.+..      .|+...+  .+++++.+++.. .+-++.+.+|   .++|+..| 
T Consensus        91 FG~R~~~ia~~~g---------~~v~~~~~------~wg~~v~--p~~v~~~L~~~~~~~~V~~vH~E---TSTGvlnp-  149 (383)
T COG0075          91 FGERFAEIAERYG---------AEVVVLEV------EWGEAVD--PEEVEEALDKDPDIKAVAVVHNE---TSTGVLNP-  149 (383)
T ss_pred             HHHHHHHHHHHhC---------CceEEEeC------CCCCCCC--HHHHHHHHhcCCCccEEEEEecc---CcccccCc-
Confidence            8876544332110         12222221      2222111  677888887432 1234455555   45677877 


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCcc-
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY-  350 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~~-  350 (447)
                         +++|.++|++||+++|+|-|-+ ||  | ..+-.+.||+  |+++.|  |+|++---+|.+..+++..+.+....+ 
T Consensus       150 ---l~~I~~~~k~~g~l~iVDaVsS-~G--g-~~~~vd~wgi--Dv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~  220 (383)
T COG0075         150 ---LKEIAKAAKEHGALLIVDAVSS-LG--G-EPLKVDEWGI--DVAITGSQKALGAPPGLAFVAVSERALEAIEERKHP  220 (383)
T ss_pred             ---HHHHHHHHHHcCCEEEEEeccc-CC--C-cccchhhcCc--cEEEecCchhccCCCccceeEECHHHHHHHhcCCCC
Confidence               9999999999999999999875 54  3 3344566777  888766  999853235788889888887764311 


Q ss_pred             ----------------cccCCCChHHHHHH-HHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 013235          351 ----------------FNTFGGNPVCTAAG-HAVLKVIQKDK---LQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       351 ----------------~~T~~~np~a~aaa-la~L~~i~~~~---l~~~~~~~g~~l~~~L~~l  394 (447)
                                      ..+....|+....| .++|+.|.+++   ..++-+.+++.++++++++
T Consensus       221 ~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al  284 (383)
T COG0075         221 SFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL  284 (383)
T ss_pred             ceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                            12223345555444 47899998775   3455666677777777766

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.40  E-value=9.3e-11  Score=120.87  Aligned_cols=276  Identities=17%  Similarity=0.145  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH-------hhcCCCeEEEEcC
Q 013235          120 VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-------LYTGCNDIISLRN  192 (447)
Q Consensus       120 v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar-------~~t~~~~ii~~~~  192 (447)
                      -.+++.+.+.....+    ..+...+|+++|++++.  .+.+++++||++|+..|++.+.       ....++.||+...
T Consensus        46 ~~~a~~~~~~~~~~~----~G~~~~~fe~~lA~~~g--~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~  119 (438)
T PRK15407         46 ELQNLVDASLDFWLT----TGRFNDAFEKKLAEFLG--VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAA  119 (438)
T ss_pred             HHHHHHHHHHhCccc----CChhHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCC
Confidence            344555555543221    23456789999999985  4578999999999999998653       2345688999999


Q ss_pred             CcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeC
Q 013235          193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (447)
Q Consensus       193 ~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~  272 (447)
                      +|.+........             |...+..+.. ...|+.|    .+++++.+.   + ++.+|++.+..|.   .  
T Consensus       120 t~~a~~~~v~~~-------------G~~pv~vdvd-~~~~~id----~~~le~~i~---~-~tkaVi~~~~~G~---p--  172 (438)
T PRK15407        120 GFPTTVNPIIQN-------------GLVPVFVDVE-LPTYNID----ASLLEAAVS---P-KTKAIMIAHTLGN---P--  172 (438)
T ss_pred             CcHHHHHHHHHc-------------CCEEEEEecC-CCcCCcC----HHHHHHHcC---c-CCeEEEEeCCCCC---h--
Confidence            986554433222             2222211110 0123334    566776663   2 5678888775442   2  


Q ss_pred             CCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccCH-HHHHhhcC
Q 013235          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTTP-EIAEVLTR  347 (447)
Q Consensus       273 ~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~~-~i~~~l~~  347 (447)
                        ..+++|.++|++||++||.|++|+ +|-    .+.-...|-.-|+.+||    |.+..|= -|+++++. ++.+.+..
T Consensus       173 --~dl~~I~~la~~~gi~vIeDaa~a-~G~----~~~g~~~G~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~  244 (438)
T PRK15407        173 --FDLAAVKAFCDKHNLWLIEDNCDA-LGS----TYDGRMTGTFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIES  244 (438)
T ss_pred             --hhHHHHHHHHHHCCCEEEEECccc-hhh----hcCCeeeeccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHH
Confidence              348999999999999999999996 432    11112233344888876    6665331 26777754 44332211


Q ss_pred             ----Cc-----------------------------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013235          348 ----RN-----------------------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK  388 (447)
Q Consensus       348 ----~~-----------------------------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~  388 (447)
                          +.                                   .+..+.-+.+.+|.++..|+.+++  ..++-+++.+++.
T Consensus       245 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~--~~~~R~~~a~~y~  322 (438)
T PRK15407        245 FRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPG--FIEARKANFAYLK  322 (438)
T ss_pred             HHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence                00                                   011223468889999999987743  6666677777888


Q ss_pred             HHHHHHHH--hcCCe-eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          389 ERLTALKD--KYGII-GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       389 ~~L~~l~~--~~~~i-~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.|..+..  ..+.. .+....-.++.+.+.+..      .....++.+.|.++||-.+
T Consensus       323 ~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~Rd~l~~~L~~~GI~~~  375 (438)
T PRK15407        323 EGLASLEDFLILPEATPNSDPSWFGFPITVKEDA------GFTRVELVKYLEENKIGTR  375 (438)
T ss_pred             HHhccCCCccccCcCCCCCeeEEEEEEEEECCcC------CCCHHHHHHHHHHCCCCcc
Confidence            87765421  11110 011111123333332110      0124679999999999665

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.39  E-value=2e-11  Score=112.31  Aligned_cols=270  Identities=16%  Similarity=0.186  Sum_probs=162.1

Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      |+.+.-.++...++.--|-..+.++...+..|.+++.||... .+|+.+|+..-++|.-++..+.           ....
T Consensus        66 ~~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~-----------iNd~  133 (375)
T KOG0633|consen   66 YPDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAA-----------INDA  133 (375)
T ss_pred             cCCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEee-----------cCCc
Confidence            444444566666666556556889999999999999998554 5788999999999943332211           0112


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~  297 (447)
                      ++..++..  .  .|+-+    .+.+.++++..  ..+.++++..-.+++|.+. ..+-+++|.+.-+  ++++++||+|
T Consensus       134 eVvkvpl~--p--dF~ln----vdai~evl~~d--s~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~--nglVVvDEAY  200 (375)
T KOG0633|consen  134 EVVKVPLN--P--DFSLN----VDAIAEVLELD--SKIKCIFLTSPGNPTGSII-KEDDILKILEMPD--NGLVVVDEAY  200 (375)
T ss_pred             eEEEecCC--C--Ccccc----HHHHHHHHhcc--ccceEEEEcCCCCCCcccc-cHHHHHHHHhCCC--CcEEEEeeee
Confidence            34444321  1  34344    44555555432  1455555544444445444 3344555554433  7899999999


Q ss_pred             cCccccCCCcccccccCCCCCEE---Eeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh
Q 013235          298 AGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (447)
Q Consensus       298 tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~  373 (447)
                      ..|.-.++.   ..+..-.|+++   ||||.+| .|+++|+..++.++++.+....  .+|+-+..+..+|+++|.-- .
T Consensus       201 idFsg~~S~---~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K--aPYNiS~~~s~~AL~Als~~-n  274 (375)
T KOG0633|consen  201 IDFSGVESR---MKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK--APYNISVAGSVAALAALSDS-N  274 (375)
T ss_pred             Eeecccccc---chHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc--CCccccchhHHHHHHhcCcc-c
Confidence            998433432   23344468877   6999999 7999999999999999887533  45566666677777776411 1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec--ceeEEEEEeeCCCCCCCCHHHHHHH-HHHHHhCCceee
Q 013235          374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR--GFLLGVEFVTDRQLKTPAKAETLYI-MDKMKGICALFF  444 (447)
Q Consensus       374 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~--Gl~~giel~~~~~~~~p~~~~~~~~-~~~l~~~Gvlv~  444 (447)
                      -+.++.+++.-.+-+.+|-......+.+.++.|.  ..|+.+++....      ...+.++ .+.+-+.||.|+
T Consensus       275 ~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~------n~~akkly~q~at~~gVvVR  342 (375)
T KOG0633|consen  275 GKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGD------NGMAKKLYKQDATKMGVVVR  342 (375)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCC------cHHHHHHHHHHHHhcceEEE
Confidence            1223334444334444444444444555554442  578888886431      1234444 445567899986

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.38  E-value=2.4e-11  Score=124.66  Aligned_cols=163  Identities=23%  Similarity=0.268  Sum_probs=112.2

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +..++++||++|+..+++....  .+++|++....|+|... .+...        .+
T Consensus        53 ~r~~~pt~~~Le~~lA~l~g~--~~~l~~ssG~~Ai~~al~al~~--~Gd~Vl~~~~~Y~~t~~-~~~~~--------l~  119 (425)
T PRK06084         53 TRIMNPTNDVLEQRVAALEGG--VGALAVASGMAAITYAIQTIAE--AGDNIVSVAKLYGGTYN-LLAHT--------LP  119 (425)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CceeEehhHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHH-HHHHh--------cc
Confidence            345677788999999998753  4567899999999999985532  45789999999986432 22210        01


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++.....+.       .|    .+++++.+..    ++.+|++|.++++.|.+.+    +++|.++|+++|+++|+||
T Consensus       120 ~~gi~v~~~d~-------~d----~e~le~ai~~----~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~  180 (425)
T PRK06084        120 RIGIETRFAAH-------DD----IAALEALIDE----RTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDN  180 (425)
T ss_pred             cceeEEEEECC-------CC----HHHHHHHhcc----CCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            11222211110       13    5667777652    5678999999899998886    8999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-Ccccccccc
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVT  337 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pigav~~  337 (447)
                      ++. .+...      .......|+++  ++|.++| |-++|.++.
T Consensus       181 a~a-~~~~~------~p~~~gaDivv~S~tK~l~G~g~~~gG~v~  218 (425)
T PRK06084        181 TVA-TPVLC------RPFEHGADIVVHSLTKYIGGHGTSIGGIVV  218 (425)
T ss_pred             CCc-ccccC------ChhhcCCCEEEECchhcccccccceeEEEE
Confidence            996 22211      22233468874  7799986 667776655

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.38  E-value=2.3e-11  Score=119.14  Aligned_cols=227  Identities=13%  Similarity=0.120  Sum_probs=129.7

Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      .+...+.++.+++++.+..+ +.++++|++++++..++....  .++++|++.+++|... ..++...+..         
T Consensus        56 ~~~g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~--~~gd~Vlv~~~~h~s~-~~~~~~~g~~---------  122 (294)
T cd00615          56 DPTGPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC--GPGDKILIDRNCHKSV-INGLVLSGAV---------  122 (294)
T ss_pred             CCChHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC--CCCCEEEEeCCchHHH-HHHHHHCCCE---------
Confidence            35667788888898888542 344458999999999887543  3567788777765433 3333332211         


Q ss_pred             CeEeecCC-CCc-CCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          218 GVHHALNP-DPY-RGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       218 g~~~~~~p-~~~-~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                       ...++.. +.. ....+.|    .+++++.+.+. ++..+.++..|.  ..|.+.+    +++|.++|+++|+++|+||
T Consensus       123 -~~~v~~~~~~~~~~~~~i~----~~~l~~~l~~~-~~~k~v~l~~p~--~~G~~~d----l~~I~~~~~~~g~~livDe  190 (294)
T cd00615         123 -PVYLKPERNPYYGIAGGIP----PETFKKALIEH-PDAKAAVITNPT--YYGICYN----LRKIVEEAHHRGLPVLVDE  190 (294)
T ss_pred             -EEEecCccCcccCcCCCCC----HHHHHHHHHhC-CCceEEEEECCC--CCCEecC----HHHHHHHHHhcCCeEEEEC
Confidence             1111110 100 0011234    56777777542 223345555563  4687776    9999999999999999999


Q ss_pred             cccCc-cccCCCcccccccCCCCCEEE--eeccccCCccccccc-cCHHHH--HhhcCC-cccccCCCChHHHHHHHHHH
Q 013235          296 VQAGF-ARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVV-TTPEIA--EVLTRR-NYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       296 v~tGf-gr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav~-~~~~i~--~~l~~~-~~~~T~~~np~a~aaala~L  368 (447)
                      ++..+ ...+ .+. ........|+++  +.|.++ |++.|+++ .+.+..  +.+... ..+.|.+.+...+++..+++
T Consensus       191 A~~~~~~~~~-~~~-~~~~~~~~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~  267 (294)
T cd00615         191 AHGAHFRFHP-ILP-SSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVAR  267 (294)
T ss_pred             cchhhhccCc-ccC-cchhhcCCcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHH
Confidence            98643 2222 111 111122458875  569874 45554443 433311  112111 12234455566666666777


Q ss_pred             HHHhh--hhHHHHHHHHHHHHHHHHH
Q 013235          369 KVIQK--DKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       369 ~~i~~--~~l~~~~~~~g~~l~~~L~  392 (447)
                      +.+.+  +++.+++.++.++++++|.
T Consensus       268 ~~~~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         268 AMMALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            76643  3566777777777777664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.37  E-value=1.1e-10  Score=118.35  Aligned_cols=195  Identities=13%  Similarity=0.105  Sum_probs=125.5

Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      ..++...+|+++|+++.++  +.+++++||++|+..++...  ...+++||+.++.|.+........         ....
T Consensus        58 ~~npt~~~Le~~iA~le~~--~~~~~~~sG~~Ai~~~l~al--l~~GD~Vvv~~~~Y~~t~~l~~~~---------l~~~  124 (394)
T PRK09028         58 RGTPTHFAFQAAIVELEGG--AGTALYPSGAAAISNALLSF--LKAGDHLLMVDSCYEPTRDLCDKI---------LKGF  124 (394)
T ss_pred             CCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHh---------hhhc
Confidence            3466778999999988743  45789999999999988643  335688999999885544321110         0012


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~  297 (447)
                      |+.....+.       .+    .+.+++.+.    .++.+|++|.+.++.|.+.+    +++|.++|+++|+++|+||+|
T Consensus       125 Gi~v~~v~~-------~~----~e~l~~~l~----~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~  185 (394)
T PRK09028        125 GIETTYYDP-------MI----GEGIRELIR----PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTW  185 (394)
T ss_pred             ceEEEEECC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCc
Confidence            333221110       12    345666653    25779999988888887766    999999999999999999999


Q ss_pred             cCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          298 AGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       298 tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      ..    +  . .+.-...-.|+++  ..|-++| | .-.|+++.++++.+.+.......--..+|..+...+..|+.+
T Consensus       186 a~----p--~-~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL  256 (394)
T PRK09028        186 AS----P--I-NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTL  256 (394)
T ss_pred             cc----c--c-cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH
Confidence            62    2  1 1222233458886  5699976 3 667877778877665542111111124577777666555443

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.36  E-value=4.8e-10  Score=113.78  Aligned_cols=282  Identities=16%  Similarity=0.116  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      ++-.+++.+.++....    +..+...++++++++++..  +..++++||++|+..+++... ..+++.||+...+|++.
T Consensus        10 ~~~~~~v~~~~~~~~~----~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~~~l~al~-~~~Gd~Viv~~~~~~~~   82 (380)
T TIGR03588        10 QDDIDAVVEVLKSDFL----TQGPTVPAFEEALAEYVGA--KYAVAFNSATSALHIACLALG-VGPGDRVWTTPITFVAT   82 (380)
T ss_pred             HHHHHHHHHHHhcCCc----cCChhHHHHHHHHHHHHCC--CeEEEEcCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHH
Confidence            4557777777765422    2355678899999999854  456677899999999998542 23567899988888655


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      .......             |...+..+... ..+..|    .+++++.+......++.+|++-  + ..|...+    +
T Consensus        83 ~~~~~~~-------------G~~~~~~~~~~-~~~~~d----~~~l~~~i~~~~~~~t~~v~~~--~-~~G~~~~----~  137 (380)
T TIGR03588        83 ANCALYC-------------GAKVDFVDIDP-DTGNID----EDALEKKLAAAKGKLPKAIVPV--D-FAGKSVD----M  137 (380)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHHhhcccCCCceEEEEe--C-CCCccCC----H
Confidence            3222211             22222221100 112234    5677777753211245555532  2 2455544    8


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC--CCCEEEee----ccccCCcccccccc-CHHHHHhhcCC--
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPDIVTMA----KGIGNGIPLGAVVT-TPEIAEVLTRR--  348 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv--~pDivt~s----K~lg~G~pigav~~-~~~i~~~l~~~--  348 (447)
                      ++|.++|++||+++|.|++|+ +|-   . +.....|.  .-|++++|    |.++.| .-|++++ ++++.+.+...  
T Consensus       138 ~~i~~l~~~~~~~lI~D~a~a-~g~---~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~  211 (380)
T TIGR03588       138 QAIAALAKKHGLKIIEDASHA-LGA---E-YGGKPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRS  211 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCc-ccC---c-cCCEeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHH
Confidence            999999999999999999997 331   1 11122333  44999877    878644 3355554 46666544310  


Q ss_pred             -c-c---------------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          349 -N-Y---------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       349 -~-~---------------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                       . .                     +..+.-+.+..+.+++.|+.+  ++..++-+++.+++.+.|.++. .........
T Consensus       212 ~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~-~~~~~~~~~  288 (380)
T TIGR03588       212 HGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLP-YFTPLTIPL  288 (380)
T ss_pred             CCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCC
Confidence             0 0                     001222567777777778765  4466777888888888887752 111111101


Q ss_pred             ec---ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          406 GR---GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       406 g~---Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +.   -.+..+.+... ..     ....++.+.|.++||.++..
T Consensus       289 ~~~~~~~~~~i~~~~~-~~-----~~r~~l~~~L~~~gI~~~~~  326 (380)
T TIGR03588       289 GSKSAWHLYPILLDQE-FG-----CTRKEVFEALRAAGIGVQVH  326 (380)
T ss_pred             CCEeEEEEEEEEECCc-CC-----CCHHHHHHHHHHCCCCcccC
Confidence            11   12223333211 00     12467888999999987643

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.35  E-value=4e-11  Score=123.27  Aligned_cols=162  Identities=22%  Similarity=0.228  Sum_probs=111.4

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      +..++...+|+++|+++.+.  +..++++||++|+.++++...  ..++.||+....|+|........         ...
T Consensus        59 r~~~p~~~~le~~lA~l~g~--~~al~~~SG~~Ai~~al~all--~pGd~VIv~~~~y~~t~~~~~~~---------~~~  125 (427)
T PRK05994         59 RITNPTNAVLEERVAALEGG--TAALAVASGHAAQFLVFHTLL--QPGDEFIAARKLYGGSINQFGHA---------FKS  125 (427)
T ss_pred             CCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHh--CCCCEEEEecCcchhHHHHHHHH---------HHh
Confidence            34567778899999999854  457889999999999998653  35688999999997653221100         001


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+.....+.       .|    .+++++.+.   + ++.+|++|.+.+++|.+.+    +++|.++|+++|+++|+||+
T Consensus       126 ~G~~v~~vd~-------~d----~~~l~~ai~---~-~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a  186 (427)
T PRK05994        126 FGWQVRWADA-------DD----PASFERAIT---P-RTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNT  186 (427)
T ss_pred             cCcEEEEECC-------CC----HHHHHHhcC---c-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECC
Confidence            1333222211       12    456776664   2 5788999999899998887    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEE--eeccccC-Ccccccccc
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVT  337 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pigav~~  337 (447)
                      ++.    + .  ........+|+++  ++|.+++ |-++|.++.
T Consensus       187 ~a~----~-~--~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        187 LAS----P-Y--LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIV  223 (427)
T ss_pred             ccc----c-c--cCCccccCCcEEEEcCccccCCCCCcEEEEEE
Confidence            862    2 1  1233445679886  6799985 445565443

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.34  E-value=3.9e-10  Score=117.02  Aligned_cols=307  Identities=12%  Similarity=0.009  Sum_probs=164.6

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHh-c--cccccccc--c---hHHHH-HHHHHHHhCCCCCceEEEc---CC
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-I--QHSTVLYL--N---HAIAD-FAEALASKMPGNLKVVFFT---NS  166 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~-~--~~~~~~~~--~---~~~~e-lae~L~~~~~~~~~~v~~~---~s  166 (447)
                      +..|.+.++-+     ...|.|.+++...+.. +  +..+..+.  .   ..+.+ ..+++++.+....+.+.|+   +|
T Consensus        34 ~~~l~l~~sen-----~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~s  108 (452)
T PTZ00094         34 IEGLELIASEN-----FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYS  108 (452)
T ss_pred             HcCeeEecccc-----cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCc
Confidence            34666665444     3468899988877743 3  22222221  1   22222 3457777787655555566   79


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      |++||..+++...  ..++.|++. ..-||.........  ...+.......+...+++....  ...|    .++|+++
T Consensus       109 gt~an~~v~~al~--~~gd~Ii~~-~~ehg~~l~~~~~l--~~~~~~~~~~~~~~~~~~~~~~--g~id----~~~L~~~  177 (452)
T PTZ00094        109 GSPANFAVYTALL--QPHDRIMGL-DLPSGGHLTHGFYT--AKKKVSATSIYFESLPYQVNEK--GLID----YDKLEEL  177 (452)
T ss_pred             hHHHHHHHHHHhc--CCCCEEEec-ccccCCcccccccc--cccccccceeeeeeeecccCCC--CCcC----HHHHHHH
Confidence            9999999887552  245666654 44465544321100  0000000001122222211101  1124    5778887


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--c
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--K  324 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K  324 (447)
                      +....+   ..+++.  .+..|...+    +++|.++|+++|+++++|++|+ +|..+...+.....  ..|+++++  |
T Consensus       178 l~~~~~---~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l~~S~hK  245 (452)
T PTZ00094        178 AKAFRP---KLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVVTTTTHK  245 (452)
T ss_pred             HHHhCC---CEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEEEcCCcc
Confidence            754322   234441  234566666    9999999999999999999995 66554222211111  46998766  9


Q ss_pred             cccCCccccccccCHHHHHhhcCC---cccccC--CCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHH
Q 013235          325 GIGNGIPLGAVVTTPEIAEVLTRR---NYFNTF--GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       325 ~lg~G~pigav~~~~~i~~~l~~~---~~~~T~--~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      .+.|.. -|++.+++++.+.+...   ..+.+|  +.++...++..++|+.+.+.   ++.+++.++.++|.+.|.+.  
T Consensus       246 ~l~GP~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~--  322 (452)
T PTZ00094        246 SLRGPR-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR--  322 (452)
T ss_pred             CCCCCC-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC--
Confidence            886522 24555666554332221   111223  34567777777889988543   46788888889998888663  


Q ss_pred             hcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       397 ~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .+.+...- ...-...+.+....       .....+...|.++||++.
T Consensus       323 g~~v~~~~-~~~~~~~v~~~~~~-------~~~~~~~~~L~~~gI~vs  362 (452)
T PTZ00094        323 GYDLVTGG-TDNHLVLVDLRPFG-------ITGSKMEKLLDAVNISVN  362 (452)
T ss_pred             CcEEecCC-CCCceEeecCCcCC-------CCHHHHHHHHHHCCcEEe
Confidence            22222110 00112233332111       012456666767799985

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.33  E-value=2.5e-10  Score=115.71  Aligned_cols=171  Identities=18%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +..++++||+.|+.+++.+   ...+++||+.++.|++.........         .
T Consensus        45 ~r~~~p~~~~Le~~la~l~g~--~~al~~~SG~~Al~~~l~~---l~pGd~Vi~~~~~y~~t~~~~~~~~---------~  110 (380)
T PRK06176         45 SRSGNPTRFALEELIADLEGG--VKGFAFASGLAGIHAVFSL---FQSGDHVLLGDDVYGGTFRLFDKVL---------V  110 (380)
T ss_pred             cCCCChhHHHHHHHHHHHhCC--CCEEEECCHHHHHHHHHHH---cCCCCEEEEcCCChhHHHHHHHHHH---------H
Confidence            456778888999999998753  4467889999999876643   2456889998888865542211110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.   + ++.+|++|...+..|.+.+    +++|.++|+++|+++|+|+
T Consensus       111 ~~gi~v~~vd~-------~d----~e~l~~ai~---~-~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~  171 (380)
T PRK06176        111 KNGLSCTIIDT-------SD----LSQIKKAIK---P-NTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDN  171 (380)
T ss_pred             hcCeEEEEcCC-------CC----HHHHHHhcC---c-CceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEC
Confidence            11333222211       12    456666653   2 5778888887888888776    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEEee--ccccC-C-ccccccccC-HHHHHhhc
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN-G-IPLGAVVTT-PEIAEVLT  346 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~-G-~pigav~~~-~~i~~~l~  346 (447)
                      +++.. ..+      ...+...|++++|  |.+++ | .-.|+++++ +++.+.+.
T Consensus       172 t~a~~-~~~------~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~  220 (380)
T PRK06176        172 TFATP-YYQ------NPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA  220 (380)
T ss_pred             Ccccc-ccC------CccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence            98632 111      1123345888754  99975 3 335556664 56655543

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.32  E-value=1.1e-09  Score=113.58  Aligned_cols=170  Identities=17%  Similarity=0.163  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEe
Q 013235          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHH  221 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~  221 (447)
                      ...++.+.++++++.+.+++.++++|++++++++.. +...++++|++.++.| .....++.....        ..|...
T Consensus       113 ~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a-~~~~~g~~Vlv~~~~~-~~~~~~~~~~~~--------~~G~~~  182 (447)
T PRK00451        113 AIFEYQTMICELTGMDVANASMYDGATALAEAALMA-VRITKRKKVLVSGAVH-PEYREVLKTYLK--------GQGIEV  182 (447)
T ss_pred             HHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHH-HHhcCCCEEEEeCccC-HHHHHHHHHHHH--------hCCcEE
Confidence            344556777888876667888999999988877753 3334567788776644 444333321100        012222


Q ss_pred             ecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE--eccccC
Q 013235          222 ALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA--DEVQAG  299 (447)
Q Consensus       222 ~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~--DEv~tG  299 (447)
                      +..|....   ..|    .+++++.+.   + +++++++... +.+|.+.+    +++|.++|+++|+++|+  |.+..|
T Consensus       183 ~~v~~~~~---~~d----~~~l~~~i~---~-~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g  246 (447)
T PRK00451        183 VEVPYEDG---VTD----LEALEAAVD---D-DTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLG  246 (447)
T ss_pred             EEecCCCC---CCC----HHHHHHhcC---C-CeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhc
Confidence            22221110   123    566777664   2 5667666654 56788865    99999999999999998  655322


Q ss_pred             ccccCCCcccccccCCCCCEEEe-----ecccc-CCccccccccCHHHHHhh
Q 013235          300 FARTGSHFWGFEAHGVVPDIVTM-----AKGIG-NGIPLGAVVTTPEIAEVL  345 (447)
Q Consensus       300 fgr~G~~~~~~~~~gv~pDivt~-----sK~lg-~G~pigav~~~~~i~~~l  345 (447)
                      +  ..    ...  ....|+++.     ||.+. +|..+|++++++++++.+
T Consensus       247 ~--~~----~~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~  290 (447)
T PRK00451        247 L--LK----PPG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQM  290 (447)
T ss_pred             c--CC----Ccc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhC
Confidence            1  11    111  234588864     55554 567789999999988874

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.31  E-value=7e-11  Score=110.66  Aligned_cols=295  Identities=19%  Similarity=0.170  Sum_probs=175.6

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      +.+|+-|-..+.    .-.+.++|+.++.-.-.   -...++...+|+++.++++  +.+.-+|++||+..|..||+.-.
T Consensus        22 ~~vDLRSDTvT~----PTdeMr~am~eA~vgDd---VyGeD~tt~rLE~~vA~l~--GKEAgLFv~SGTmgNllaIm~Hc   92 (384)
T KOG1368|consen   22 RSVDLRSDTVTV----PTDEMRRAMAEASVGDD---VYGEDPTTNRLEQRVAELF--GKEAGLFVPSGTMGNLLAIMVHC   92 (384)
T ss_pred             eccccccccccC----ChHHHHHHHhhcccCcc---cccCCccHHHHHHHHHHHh--CccceeeecccccccHHHHHHHh
Confidence            456776665544    34567777766532210   1234677789999999998  45678999999999999998654


Q ss_pred             hhcCCCeEEEEc-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC----CCC
Q 013235          180 LYTGCNDIISLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT----SGH  254 (447)
Q Consensus       180 ~~t~~~~ii~~~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~----~~~  254 (447)
                      ... ...||+-+ .--|-+..+.++.-           .|++..+.-+.      +|.---++++|+.+....    -.-
T Consensus        93 ~~r-g~eii~gd~~HI~~~E~gg~s~l-----------~gv~~~tv~~e------~dgtm~ledIe~~ir~~~GD~H~p~  154 (384)
T KOG1368|consen   93 HQR-GSEIIVGDRAHIHRYEQGGISQL-----------AGVHVRTVKNE------NDGTMDLEDIEAAIRVPKGDCHMPP  154 (384)
T ss_pred             cCC-CceEEeccchheeehhccChhhh-----------ccceeEeeeeC------CCCeeeHHHHHHhhcCCCCCccCCC
Confidence            433 34444322 22222222222211           23333322111      111111678888776321    114


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCC-------CCCE--EEeec
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGV-------VPDI--VTMAK  324 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv-------~pDi--vt~sK  324 (447)
                      ...|.+|--+...|-.+.|-+|+.++.++|++||+.|-+|-+.         .|.. -..|+       .-|-  +||||
T Consensus       155 T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR---------i~NAavasgV~vk~i~~~fDSVsiCLSK  225 (384)
T KOG1368|consen  155 TKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR---------IFNAAVASGVPVKKICSAFDSVSICLSK  225 (384)
T ss_pred             ceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhh---------hhhHHHHcCCCHHHHHHhhhhhhhhhhc
Confidence            6788888755554444558999999999999999999999643         2211 11222       2343  48999


Q ss_pred             cccCCccccc-cccCHHHHHhhcC--CcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-C
Q 013235          325 GIGNGIPLGA-VVTTPEIAEVLTR--RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-I  400 (447)
Q Consensus       325 ~lg~G~piga-v~~~~~i~~~l~~--~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~  400 (447)
                      +||.  |+|- +++++++++....  ...++-+--.-+-+|||+-+|+.  .-.++.+.++..+.|-+.+...    + +
T Consensus       226 glgA--PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~----~~i  297 (384)
T KOG1368|consen  226 GLGA--PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTP----EEI  297 (384)
T ss_pred             cCCC--CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhccc----cce
Confidence            9964  6655 5688888765432  12233333356778888888863  2224555556665555555432    2 3


Q ss_pred             eeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          401 IGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       401 i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      -..|. -.-.|..+++..++-       .+.++.+.+.+.||++-.
T Consensus       298 ~v~v~a~etNiv~~~l~q~~~-------~~~~l~~~~~k~gi~lm~  336 (384)
T KOG1368|consen  298 RVEVPAVETNIVNMVLCQARL-------TAEELCKFLEKNGILLMG  336 (384)
T ss_pred             eeecchhhcceeeeecccccC-------CHHHHHHHHHHCCeEEee
Confidence            34455 556788887754432       257789999999998754

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.31  E-value=2.1e-10  Score=117.92  Aligned_cols=163  Identities=20%  Similarity=0.209  Sum_probs=110.7

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++....|+++|+++.+  .+..++++||++|+..++...  ...++.|++..+.|++.........         .
T Consensus        59 ~r~~~p~~~~Le~~lA~leg--~~~al~~~sG~~Ai~~al~~l--l~~GD~Vlv~~~~y~~t~~~~~~~~---------~  125 (431)
T PRK08248         59 TRIMNPTTDVFEKRIAALEG--GIGALAVSSGQAAITYSILNI--ASAGDEIVSSSSLYGGTYNLFAHTL---------P  125 (431)
T ss_pred             ECCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCchhhHHHHHHHHH---------H
Confidence            34567888899999999985  356789999999999998644  2356788888887765432221110         1


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.   + ++.+|++|...++.|.+.+    +++|.++|+++|+++|+|+
T Consensus       126 ~~Gv~v~~vd~-------~d----~e~l~~ai~---~-~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~  186 (431)
T PRK08248        126 KLGITVKFVDP-------SD----PENFEAAIT---D-KTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDN  186 (431)
T ss_pred             hCCEEEEEECC-------CC----HHHHHHhcC---C-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeC
Confidence            12333333221       12    466776664   2 5678888877788888887    8999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-Ccccccccc
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVT  337 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pigav~~  337 (447)
                      ++.    ++ ..  ......-.|+++  +.|.+++ |..+|+++.
T Consensus       187 t~a----~~-~~--~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~  224 (431)
T PRK08248        187 TFA----SP-YL--LRPIEHGADIVVHSATKFIGGHGTSIGGVIV  224 (431)
T ss_pred             CCC----cc-cc--CChhHcCCCEEEEcCccccCCCCCceEEEEE
Confidence            975    22 11  111123358876  5699986 677777665

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.30  E-value=3.3e-10  Score=114.71  Aligned_cols=238  Identities=19%  Similarity=0.141  Sum_probs=139.1

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++...  +..++++||+.|+..++.+   ...+++||+.++.|.+.........         .
T Consensus        45 ~r~~~p~~~~Le~~lA~l~g~--~~~~~~~sG~aai~~~~~~---l~~Gd~Viv~~~~y~~~~~~~~~~~---------~  110 (377)
T PRK07671         45 SRTGNPTRAALEELIAVLEGG--HAGFAFGSGMAAITAVMML---FSSGDHVILTDDVYGGTYRVMTKVL---------N  110 (377)
T ss_pred             CCCCChHHHHHHHHHHHHhCC--CceEEeCCHHHHHHHHHHH---hCCCCEEEECCCccchHHHHHHHHH---------h
Confidence            456788889999999998854  4456789999988876542   2356889999998864432221110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.   + ++.+|++|...++.|.+.+    +++|.++|+++|+++|+||
T Consensus       111 ~~G~~v~~v~~-------~d----~~~l~~ai~---~-~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~  171 (377)
T PRK07671        111 RFGIEHTFVDT-------SN----LEEVEEAIR---P-NTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDN  171 (377)
T ss_pred             cCCeEEEEECC-------CC----HHHHHHhcC---C-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEEC
Confidence            11333322221       13    456766664   2 5678888876677777765    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-cccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      ++... ..+ ..     .....|+++  ++|.++| + .-.|++++ ++++++.+........-..+|..+..++..++.
T Consensus       172 a~~~~-~~~-~p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~t  244 (377)
T PRK07671        172 TFMTP-YWQ-SP-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKT  244 (377)
T ss_pred             CCCcc-ccC-Ch-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcCh
Confidence            98531 112 11     223348875  6799984 2 33444555 566766554322111122357666666655544


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHH----hcCCe----------eeEeecceeEEEEE
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKD----KYGII----------GDVRGRGFLLGVEF  415 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~i----------~~vrg~Gl~~giel  415 (447)
                      +..  .+++..++...+.+.|++...    .|+.+          ....|.|-|+.|++
T Consensus       245 l~~--R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~  301 (377)
T PRK07671        245 LGI--RMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV  301 (377)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence            322  223333444444444433210    01111          11346788999998

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.28  E-value=3.3e-10  Score=114.73  Aligned_cols=240  Identities=13%  Similarity=0.069  Sum_probs=140.9

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      +..+|....|+++|+..-.+ .. .++++||++|+..++...  ...++.||+.++.|.+.........         ..
T Consensus        60 R~gnPt~~~Le~~la~le~~-~~-~v~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l---------~~  126 (395)
T PRK05967         60 TRGTPTTDALCKAIDALEGS-AG-TILVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTML---------KR  126 (395)
T ss_pred             CCCChHHHHHHHHHHHHhCC-CC-EEEECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHH---------Hh
Confidence            45678888899999877532 33 457777999999998543  3467889999999987543221110         01


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+.....+.       .+    .+.+++.+.    +++.+|++|...++.+.+.+    +++|.++|+++|+++|+|++
T Consensus       127 ~Gi~v~~vd~-------~~----~e~l~~al~----~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t  187 (395)
T PRK05967        127 LGVEVEYYDP-------EI----GAGIAKLMR----PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNT  187 (395)
T ss_pred             cCeEEEEeCC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECC
Confidence            1332222110       11    245666664    25678999976666666665    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEE--eeccccC--CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~  372 (447)
                      +....       .+.....-.||++  +.|.++|  ..-.|+++.+++..+.+.......--..+|..+...+..|+.+.
T Consensus       188 ~a~p~-------~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~  260 (395)
T PRK05967        188 WATPL-------YFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMG  260 (395)
T ss_pred             ccCce-------ecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHH
Confidence            96421       1122223357775  6799886  36778788888765555321111111245776666555554432


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHHH-HhcCCe----------eeEeecceeEEEEEe
Q 013235          373 --KDKLQNNAHVVGSYLKERLTALK-DKYGII----------GDVRGRGFLLGVEFV  416 (447)
Q Consensus       373 --~~~l~~~~~~~g~~l~~~L~~l~-~~~~~i----------~~vrg~Gl~~giel~  416 (447)
                        =+...++..++.++|.+.= .+. -.||.+          ....|.|-|+.|++.
T Consensus       261 lR~~~~~~na~~lA~~L~~hp-~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~  316 (395)
T PRK05967        261 IRLEHHRKSALEIARWLEGRP-DVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLA  316 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence              1223344444444443320 000 011110          112467889999995

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.27  E-value=1.7e-09  Score=110.76  Aligned_cols=271  Identities=11%  Similarity=0.019  Sum_probs=157.4

Q ss_pred             chHHHHHHHHHHHhCCCC-CceEEEcCCHH-HHHHHHHHHHHhhc-CCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          140 NHAIADFAEALASKMPGN-LKVVFFTNSGT-EANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~-~~~v~~~~sGs-eA~e~Aik~ar~~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      .....++.+.+++.++.. .+.++++++|| .++.+++..++... +.+.||+...+ |-.+..++...+..        
T Consensus       104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t-h~S~~kAi~~~G~~--------  174 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID-QKSCIKAISTAGFE--------  174 (444)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC-hHHHHHHHHHcCCe--------
Confidence            344556777777777532 23688999999 79999988777532 34677877776 65666665554321        


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                        ...++. ......|.-|    .++|++.|....++.+.+++..|..+..|...+    +++|.++|++||+++|+|++
T Consensus       175 --pv~Vd~-~~d~~~~~iD----~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaA  243 (444)
T TIGR03531       175 --PRVIET-VLDGDELTTD----VEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNA  243 (444)
T ss_pred             --EEEeee-eecCcCCCcC----HHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECc
Confidence              112221 0011123345    677888887433356778887776443333333    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCC-CCCEEEe--eccccC-Ccccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          297 QAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGN-GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~-G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      |......-.++. -..... ..|++++  .|.+.. |. -|++++ ++++++.+... +...... .....+....+ .+
T Consensus       244 yg~~~~~~~~~~-~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~-y~g~~~~-s~~~~~~~~ll-~~  318 (444)
T TIGR03531       244 YGLQSNKYMELI-NKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKS-YPGRASA-SPSLDVLITLL-SL  318 (444)
T ss_pred             CcCcChhhhhhh-hccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHh-ccCCCCC-hHHHHHHHHHH-Hh
Confidence            963211000010 011112 3588875  488763 22 233445 67777766542 1122222 22333333333 23


Q ss_pred             hh---hhHHHHHHHHHHHHHHHHHHHHHhcCC-eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          372 QK---DKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       372 ~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      -.   +++.++..++.+++.+.|.++.++++. +.+++..-.-+++.+..-.      +.....+-..|+.++|
T Consensus       319 G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~------~~~~~~~g~~l~~~~v  386 (444)
T TIGR03531       319 GSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK------GKDPTMLGSMLYSRRV  386 (444)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc------ccCHHHHHHHHHhCCC
Confidence            22   346677788889999999999988864 4555555555666664211      1113456667777766

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.27  E-value=4.7e-10  Score=115.35  Aligned_cols=162  Identities=22%  Similarity=0.246  Sum_probs=105.8

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      ++.++...+|+++|+++.+.  +..++++||+.|+.+++...  ...++.||+....|.+ +...+...        ...
T Consensus        65 r~~~p~~~~Le~~lA~l~g~--~~av~~sSG~aAi~~al~al--l~~Gd~Vv~~~~~y~~-t~~~~~~~--------l~~  131 (436)
T PRK07812         65 RIMNPTQDVVEQRIAALEGG--VAALLLASGQAAETFAILNL--AGAGDHIVSSPRLYGG-TYNLFHYT--------LPK  131 (436)
T ss_pred             CCCCchHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHH--hCCCCEEEEeCCcchH-HHHHHHHH--------hhc
Confidence            34477788999999998853  55788999999999999643  2356788887776643 32221100        011


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+.....+++      .|    .+++++.+.   + ++.+|++|.+.++.|.+.+    +++|.++|+++|+++|+|++
T Consensus       132 ~Gi~v~~vdd~------~d----~e~l~~ai~---~-~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t  193 (436)
T PRK07812        132 LGIEVSFVEDP------DD----LDAWRAAVR---P-NTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNT  193 (436)
T ss_pred             CeEEEEEECCC------CC----HHHHHHhCC---C-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECC
Confidence            23333322211      12    456666554   2 5679999999999999988    99999999999999999998


Q ss_pred             ccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccc
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVV  336 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~  336 (447)
                      +.. +...      .....-.|+++  +.|.++| | .-.|+++
T Consensus       194 ~a~-~~~~------~pl~~GaDivv~S~tK~lgg~G~~i~G~vv  230 (436)
T PRK07812        194 IAT-PYLI------RPLEHGADIVVHSATKYLGGHGTAIAGVIV  230 (436)
T ss_pred             Ccc-cccC------CchhcCCCEEEEecccccCCCCCeEEEEEE
Confidence            852 2111      11223468875  6799985 4 3334444

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.26  E-value=3e-09  Score=107.29  Aligned_cols=280  Identities=19%  Similarity=0.178  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      .+..+++.+.++..+.+.   ..+...+++++++++++  .+.++.++||+.|+.+|++... ..++++||+..-+|.+.
T Consensus         5 ~e~~~~v~~~l~s~~~~~---~g~~~~~fE~~~a~~~g--~~~~~~~~sgt~Al~~al~~l~-~~~gdeVi~p~~t~~~~   78 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLST---YGPYVEEFEKEFAEYFG--VKYAVAVSSGTSALHLALRALG-LGPGDEVIVPAYTFPAT   78 (363)
T ss_dssp             HHHHHHHHHHHHHTCCSS---SSHHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHTT-GGTTSEEEEESSS-THH
T ss_pred             HHHHHHHHHHHHhCCccC---CCHHHHHHHHHHHHHhC--CCeEEEeCChhHHHHHHHHhcC-CCcCceEecCCCcchHH
Confidence            345666777776653221   15778899999999994  6789999999999999999643 44678999988888655


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      ....+..+             ...+... .....+..|    .+++++.+..    ++.+|++-...|   ....    +
T Consensus        79 ~~ai~~~G-------------~~pv~~D-i~~~~~~id----~~~~~~~i~~----~t~ai~~~h~~G---~~~d----~  129 (363)
T PF01041_consen   79 ASAILWAG-------------AEPVFVD-IDPETLNID----PEALEKAITP----KTKAILVVHLFG---NPAD----M  129 (363)
T ss_dssp             HHHHHHTT--------------EEEEE--BETTTSSB-----HHHHHHHHHT----TEEEEEEE-GGG---B-------H
T ss_pred             HHHHHHhc-------------cEEEEEe-ccCCcCCcC----HHHHHHHhcc----CccEEEEecCCC---Cccc----H
Confidence            54444332             2222111 111123334    6778888873    456777665554   3333    9


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcC---Cc
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTR---RN  349 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~---~~  349 (447)
                      ++|.++|+++|++||.|=+|+ +|-    .+.-...|-.-|+.+||    |.+..|= -|+++++ +++.+.+..   ..
T Consensus       130 ~~i~~~~~~~~i~lIeD~a~a-~g~----~~~g~~~G~~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g  203 (363)
T PF01041_consen  130 DAIRAIARKHGIPLIEDAAQA-FGA----RYKGRPVGSFGDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHG  203 (363)
T ss_dssp             HHHHHHHHHTT-EEEEE-TTT-TT-----EETTEETTSSSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTT
T ss_pred             HHHHHHHHHcCCcEEEccccc-cCc----eeCCEeccCCCCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccC
Confidence            999999999999999999997 432    11113345556999987    9886321 1567765 555544432   11


Q ss_pred             --------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc--CCeee-EeecceeEE
Q 013235          350 --------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY--GIIGD-VRGRGFLLG  412 (447)
Q Consensus       350 --------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~--~~i~~-vrg~Gl~~g  412 (447)
                                    .+..|..+++..+.+++.|+.+++  ..++-+++.+++++.|..+..-.  +.... .+.....+.
T Consensus       204 ~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~--~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~  281 (363)
T PF01041_consen  204 RSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDE--IIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFP  281 (363)
T ss_dssp             EETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEE
T ss_pred             cCccccccccccccCCcccccHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence                          112344568899999999987643  44555666677777766653110  00011 111222333


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +.+.+...      ....++.+.|.++||-+..-
T Consensus       282 i~~~~~~~------~~rd~l~~~L~~~GI~~~~~  309 (363)
T PF01041_consen  282 IRLPDEAL------ADRDELVEALRARGIETRPH  309 (363)
T ss_dssp             EEETCCGC------STHHHHHHHHHHTTBEEBCS
T ss_pred             cccccccc------chHHHHHHHHHHCCCccccc
Confidence            43322100      12467999999999987654

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.25  E-value=3.1e-09  Score=111.05  Aligned_cols=288  Identities=18%  Similarity=0.187  Sum_probs=156.3

Q ss_pred             CCCHHHHHHHHHHHHhccccc------ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------c
Q 013235          115 HCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------T  182 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~------~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t  182 (447)
                      |.+|.+.+++.+......++.      ..+....+.++.+.++++++.+ +..++.++|+.+...++.+++.+      +
T Consensus        81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~  159 (481)
T PRK04366         81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-AVTLQPAAGAHGELTGLLMIRAYHEARGDT  159 (481)
T ss_pred             CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC-ceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence            467888888876522222111      0112244567778888887543 33555678887777666554432      1


Q ss_pred             CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE-c
Q 013235          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS-E  261 (447)
Q Consensus       183 ~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~-E  261 (447)
                      ++++|++.++.|+ .........            |+..+..|..  ..+..|    .++|++.+.   + ++++|++ .
T Consensus       160 ~~~~Vlv~~~~hp-~~~~~~~~~------------G~~vv~v~~~--~~~~~D----~e~L~~~i~---~-~t~~V~v~~  216 (481)
T PRK04366        160 KRTEVIVPDSAHG-TNPASAAMA------------GFKVVEIPSN--EDGLVD----LEALKAAVG---E-DTAALMLTN  216 (481)
T ss_pred             CCCEEEEcCCccH-hHHHHHHHc------------CCEEEEeecC--CCCCcC----HHHHHhhcc---c-CCeEEEEeC
Confidence            3457887777554 333332221            2222222221  112234    566766664   2 3455544 4


Q ss_pred             cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc-----CCccccc
Q 013235          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG-----NGIPLGA  334 (447)
Q Consensus       262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg-----~G~piga  334 (447)
                      |.  .+|.+.   .-+++|.++|+++|+++|+|+++. .+-.| .. ....+|  .|+++++  |.++     ||--+|+
T Consensus       217 Pn--~tG~~~---~dl~eI~~~a~~~gal~iVD~a~~-~~~~g-~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~  286 (481)
T PRK04366        217 PN--TLGLFE---RNILEIAEIVHEAGGLLYYDGANL-NAILG-KA-RPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGP  286 (481)
T ss_pred             CC--Cccccc---hHHHHHHHHHHHcCCEEEEEecCh-hhhcc-cC-CccccC--CCEEEEechhhcCCCCCCCCCCeee
Confidence            43  556541   238999999999999999999984 33233 11 122334  4988653  8876     2334677


Q ss_pred             cccCHHHHHhhcCCc----------------c---cccCCCChHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHH
Q 013235          335 VVTTPEIAEVLTRRN----------------Y---FNTFGGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLT  392 (447)
Q Consensus       335 v~~~~~i~~~l~~~~----------------~---~~T~~~np~a~aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~  392 (447)
                      +.+++++.+.+....                |   .-.+.++.+.+.++...+..+-.+++.   ++..++.++|+++|+
T Consensus       287 l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~  366 (481)
T PRK04366        287 VGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLK  366 (481)
T ss_pred             eeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            778888777663210                0   112233445555566666655555443   556677899999998


Q ss_pred             HHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       393 ~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++   +.+..+    +..+..-+.+...-..+ .....++.+.|.++||.++
T Consensus       367 ~~---~~~~~~----~~~~~~~~~~~~~~~~~-g~~~~~v~~~L~~~Gi~~~  410 (481)
T PRK04366        367 DI---YDLPYD----RPCMHEFVLSGKKLKET-GVRTLDIAKRLLDYGFHPP  410 (481)
T ss_pred             hh---CcccCC----CCeeEEEEEECcccccc-CCCHHHHHHHHHHCCccCC
Confidence            86   332211    11111111111100000 0124679999999998865

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.25  E-value=4.2e-10  Score=114.08  Aligned_cols=192  Identities=17%  Similarity=0.089  Sum_probs=119.7

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      .++...+|+++|+++.+.  +.+++++||+.|+..++.+   ...++.||+.+..|.+........         ....|
T Consensus        45 ~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~l---l~~Gd~Vl~~~~~y~~~~~~~~~~---------~~~~G  110 (378)
T TIGR01329        45 GNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITRL---LNNGDEIIAGDDLYGGTDRLLTQV---------VPRSG  110 (378)
T ss_pred             CChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH---hCCCCEEEEcCCCchHHHHHHHHH---------HHHcC
Confidence            466678899999998854  5677889999999877653   345678888887775432211000         00113


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  298 (447)
                      +.....+.       .|    .+++++.++    .++.+|++|...++.|.+.+    +++|.++|+++|+++|+|+++.
T Consensus       111 ~~v~~vd~-------~d----~~~le~~i~----~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~  171 (378)
T TIGR01329       111 VVVVHVDT-------TD----LDKVKAALG----PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMM  171 (378)
T ss_pred             cEEEEeCC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCc
Confidence            33322221       12    456776664    26778999988888888886    9999999999999999999973


Q ss_pred             CccccCCCcccccccCCCCCEEE--eeccccC--CccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          299 GFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       299 Gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                       .+...      ...+.-.|+++  ..|.++|  +...|+++++ +++.+.+.......-...+|..+..++..|+.
T Consensus       172 -~~~~~------~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t  241 (378)
T TIGR01329       172 -SPLLC------NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT  241 (378)
T ss_pred             -ccccC------ChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC
Confidence             21111      11122358886  5699975  3567888774 45545444221111233457766655554443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05939 hypothetical protein; Provisional

Probab=99.25  E-value=7.7e-10  Score=112.70  Aligned_cols=163  Identities=17%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +..+.++||+.|+..++...  ...++.||+.+..|.+.......+.          
T Consensus        42 ~r~g~p~~~~lE~~la~leg~--~~~v~~ssG~~Ai~~~l~al--l~~Gd~Vv~~~~~y~~t~~~~~~l~----------  107 (397)
T PRK05939         42 ARQGTPTTAALEAKITKMEGG--VGTVCFATGMAAIAAVFLTL--LRAGDHLVSSQFLFGNTNSLFGTLR----------  107 (397)
T ss_pred             CCCCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHH--cCCCCEEEECCCccccHHHHHHHHH----------
Confidence            344578888999999998854  44667889999999998754  2356788887776644322111110          


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.+.    +++.+|++|.+.++.|.+.+    +++|.++|+++|+++|+|+
T Consensus       108 ~~G~~v~~v~~-------~d----~e~l~~~l~----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~  168 (397)
T PRK05939        108 GLGVEVTMVDA-------TD----VQNVAAAIR----PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDN  168 (397)
T ss_pred             hcCCEEEEECC-------CC----HHHHHHhCC----CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEEC
Confidence            11332222211       12    466777664    25778999998999998876    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEE--EeeccccC-CccccccccC
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTT  338 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pigav~~~  338 (447)
                      +|..    + ..  ++......|++  +++|.+++ |-.+|+++..
T Consensus       169 t~a~----~-~~--~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~  207 (397)
T PRK05939        169 TMTS----P-WL--FRPKDVGASLVINSLSKYIAGHGNALGGAVTD  207 (397)
T ss_pred             Cccc----c-cc--cCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence            9852    1 11  12222235777  47899996 7777776653

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.24  E-value=1.4e-09  Score=106.85  Aligned_cols=263  Identities=14%  Similarity=0.060  Sum_probs=165.4

Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHH
Q 013235          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (447)
                      .++.+|+-+.+.+.+++++..  ..+.|++-+.+|-+....             +...|+..+|.+....   |.+    
T Consensus       126 diiit~G~t~~l~~~l~~~~N--~gd~vlie~~ty~~AL~s-------------~~a~gv~~ipv~md~~---Gi~----  183 (472)
T KOG0634|consen  126 DIIITNGNTDGLFKVLRTLIN--RGDHVLIEEYTYPSALQS-------------MEALGVKIIPVKMDQD---GID----  183 (472)
T ss_pred             eEEEecCCchHHHHHHHHhhc--CCCceEEecccchHHHHh-------------ccccCceEEeccccCC---CCC----
Confidence            588999999999999997754  456677777777432221             1123666776654322   233    


Q ss_pred             HHHHHHHHHccCC-----CCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcccc---CC-----
Q 013235          240 AKDVQDLIDFGTS-----GHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART---GS-----  305 (447)
Q Consensus       240 ~~~le~~i~~~~~-----~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~---G~-----  305 (447)
                      .+.|++++..-.+     .+......=| -|+++|... +.+--++|.+|+|+|++++|.||+|--+-..   ++     
T Consensus       184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~  262 (472)
T KOG0634|consen  184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELES  262 (472)
T ss_pred             HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccC
Confidence            5667777764211     1355566666 888888765 7888899999999999999999998533211   11     


Q ss_pred             Cccc--------------ccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          306 HFWG--------------FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       306 ~~~~--------------~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      .-..              .+..|-+.-+-+|||-++.|+|+|++.+++.+++..-......|-+-+.+++...-+.|+..
T Consensus       263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~w  342 (472)
T KOG0634|consen  263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRW  342 (472)
T ss_pred             ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHH
Confidence            0000              01111111223799999999999999999988776655445567777778888888888877


Q ss_pred             hhhhHHHHHHHHHHHH---HHHHHHHHHhc-CC---eeeEeecceeEEEEEeeCC-CCCCCCHHHHHHHHHHHHhCCcee
Q 013235          372 QKDKLQNNAHVVGSYL---KERLTALKDKY-GI---IGDVRGRGFLLGVEFVTDR-QLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l---~~~L~~l~~~~-~~---i~~vrg~Gl~~giel~~~~-~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      -++++++.+.++....   +..+.....++ +.   ...++-.|+|++|++.-.. .++..-++.-..+...+.++||++
T Consensus       343 gqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~  422 (472)
T KOG0634|consen  343 GQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKL  422 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEE
Confidence            6776655555544322   22333333333 32   2235677999999995111 011111223345666888999987


Q ss_pred             ec
Q 013235          444 FS  445 (447)
Q Consensus       444 ~~  445 (447)
                      -.
T Consensus       423 v~  424 (472)
T KOG0634|consen  423 VC  424 (472)
T ss_pred             ec
Confidence            53

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.24  E-value=1.1e-09  Score=112.74  Aligned_cols=161  Identities=20%  Similarity=0.195  Sum_probs=108.1

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.++...+|+++|+++.+.  +.+++++||++|+.+++...  ...++.||+....|++........         ..
T Consensus        59 ~R~~~p~~~~le~~lA~l~g~--~~av~~sSGt~Al~~al~~l--l~~Gd~Vi~~~~~y~~t~~~~~~~---------l~  125 (433)
T PRK08134         59 SRISNPTVAVLEERVAALEGG--VGAIATASGQAALHLAIATL--MGAGSHIVASSALYGGSHNLLHYT---------LR  125 (433)
T ss_pred             ecCcChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCccHHHHHHHHHH---------Hh
Confidence            345678889999999999854  34789999999999998754  335678888888887543222110         01


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.....+.       .|    .+++++.|..    ++.+|++|.+.++.|.+.+    +++|.++|+++|+++|+|.
T Consensus       126 ~~Gi~v~~vd~-------~d----~~~l~~~i~~----~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~  186 (433)
T PRK08134        126 RFGIETTFVKP-------GD----IDGWRAAIRP----NTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDS  186 (433)
T ss_pred             hCCeEEEEECC-------CC----HHHHHHhcCC----CCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEEC
Confidence            12333322211       12    5677777652    5678899988888888887    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEEee--ccccC-Ccccccc
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN-GIPLGAV  335 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~-G~pigav  335 (447)
                      +|.    +| ..  ......-.|++++|  |-++| |--+|.+
T Consensus       187 t~a----~~-~~--~~pl~~GaD~vv~S~tK~l~g~g~~~gG~  222 (433)
T PRK08134        187 TFT----TP-YL--LRPFEHGADLVYHSATKFLGGHGTAIGGV  222 (433)
T ss_pred             CCc----cc-cc--CCchhcCCCEEEeccccccCCCCCceEEE
Confidence            985    22 11  11123345888755  88874 4334443

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.24  E-value=3.1e-09  Score=109.19  Aligned_cols=182  Identities=12%  Similarity=0.042  Sum_probs=111.1

Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccC--CCC
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG--VVP  317 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~g--v~p  317 (447)
                      .+++++++...   +. .+|+-.....++ ..+    +++|+++|+++|+++++|++|+ +|-.|..... +.++  -..
T Consensus       209 ~d~l~~~~~~~---~p-lvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~-~~~~~~~~~  277 (493)
T PRK13580        209 YDEIAALAREF---KP-LILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFT-GDEDPVPHA  277 (493)
T ss_pred             HHHHHHHHhhc---CC-EEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchh-hceeccccch-hhcCCCCCC
Confidence            56777777642   33 333434444444 444    9999999999999999999995 6544311211 1111  146


Q ss_pred             CEEE--eeccccCCccccccccCHHHHHhhcCCcccccCCC--ChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHH
Q 013235          318 DIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGG--NPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKER  390 (447)
Q Consensus       318 Divt--~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~--np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~  390 (447)
                      |+++  ++|++.|.. -|++++++++.+.+.... ...|++  +| ..+++..++..+.++   ++.+++.++.++|++.
T Consensus       278 D~vtgT~hKaL~GP~-GG~I~~~~~l~~~L~~a~-P~i~gg~l~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~  354 (493)
T PRK13580        278 DIVTTTTHKTLRGPR-GGLVLAKKEYADAVDKGC-PLVLGGPLPH-VMAAKAVALAEARTPEFQKYAQQVVDNARALAEG  354 (493)
T ss_pred             cEEEeCChhhccCCC-eEEEEecHHHHHHHhhCC-CcccCCCccH-HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            8774  679995421 367888999988885332 233443  34 333333345555433   3789999999999999


Q ss_pred             HHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       391 L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |.+.  .++++.. ....-++.|.+.+.       ......+.+.|.+.||++..
T Consensus       355 L~~~--G~~vv~g-gTdshIV~V~lg~~-------~~~g~~a~~~L~e~GI~vn~  399 (493)
T PRK13580        355 FLKR--GARLVTG-GTDNHLVLIDVTSF-------GLTGRQAESALLDAGIVTNR  399 (493)
T ss_pred             HHhc--CCCccCC-CCCCCEEEEEeCCH-------HHHHHHHHHHHHHCCeEEcc
Confidence            9886  4443321 02345666666322       11123566789999999864

>PLN02509 cystathionine beta-lyase

Probab=99.24  E-value=5.2e-10  Score=115.55  Aligned_cols=231  Identities=14%  Similarity=0.081  Sum_probs=142.3

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      .++...+++++++++.+  .+.+++++||+.|+.+++.+   ...++.||+.+..|.+.........         ...|
T Consensus       131 gnpt~~aLE~~lA~leg--~e~ai~~~SG~aAi~~il~l---l~~GD~VI~~~~~y~~t~~ll~~~l---------~~~G  196 (464)
T PLN02509        131 GNPTRDALESLLAKLDK--ADRAFCFTSGMAALSAVTHL---IKNGEEIVAGDDVYGGSDRLLSQVV---------PRSG  196 (464)
T ss_pred             CCHHHHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHHHH---hCCCCEEEEcCCchhhHHHHHHHHH---------HHCC
Confidence            46788899999999874  45677889999988655532   3466889998988865432211100         0113


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  298 (447)
                      +.....+.       .|    .+++++.+.   + ++.+|++|.+.++.|.+.+    +++|.++|++||+++|+||++.
T Consensus       197 ~~v~~vd~-------~d----~e~l~~ai~---~-~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a  257 (464)
T PLN02509        197 VVVKRVNT-------TN----LDEVAAAIG---P-QTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIM  257 (464)
T ss_pred             eEEEEeCC-------CC----HHHHHHhCC---c-CCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc
Confidence            32222211       22    456666653   2 5678889988888888765    9999999999999999999984


Q ss_pred             CccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh
Q 013235          299 GFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (447)
Q Consensus       299 Gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~  373 (447)
                       .+..+      ...+...|+++  ++|.++| | .-.|+++++ +++.+.+...........+|..++.++..|+.+..
T Consensus       258 -~~~~~------~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~~  330 (464)
T PLN02509        258 -SPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMAL  330 (464)
T ss_pred             -ccccC------ChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHHH
Confidence             32222      11233468885  5699986 3 334556554 44433322111111122468888888888887632


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCee------------------eEeecceeEEEEE
Q 013235          374 DKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEF  415 (447)
Q Consensus       374 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrg~Gl~~giel  415 (447)
                        .+++..+..+++.+.|++    ++.+.                  ...|.|-|+.+++
T Consensus       331 --R~~r~~~nA~~la~~L~~----~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~  384 (464)
T PLN02509        331 --RIEKQQENARKIAMYLSS----HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT  384 (464)
T ss_pred             --HHHHHHHHHHHHHHHHhc----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence              445555555555555543    33332                  2346788899988

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.22  E-value=2.2e-09  Score=108.50  Aligned_cols=247  Identities=19%  Similarity=0.172  Sum_probs=148.1

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .++.+|....|+++|+++.++  +.++.++||..|+.+++....  ..++.|++....|+|........         .+
T Consensus        50 ~R~gnPt~~~le~~la~Le~g--~~a~~~~SGmaAi~~~l~~ll--~~Gd~iv~~~~~Y~~t~~~~~~~---------l~  116 (386)
T PF01053_consen   50 SRYGNPTVRALEQRLAALEGG--EDALLFSSGMAAISAALLALL--KPGDHIVASDDLYGGTYRLLEEL---------LP  116 (386)
T ss_dssp             TTTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHS---TTBEEEEESSSSHHHHHHHHHC---------HH
T ss_pred             eccccccHHHHHHHHHHhhcc--cceeeccchHHHHHHHHHhhc--ccCCceEecCCccCcchhhhhhh---------hc
Confidence            456688999999999998753  667888999999999887443  24688999999997744332211         11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC-CEEEEe
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIAD  294 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g-~llI~D  294 (447)
                      ..|+...... +      .|    .+++++.++.    ++.+|++|+..++...++.    +++|.++|+++| +++|+|
T Consensus       117 ~~gv~v~~~d-~------~d----~~~l~~~l~~----~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVD  177 (386)
T PF01053_consen  117 RFGVEVTFVD-P------TD----LEALEAALRP----NTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVD  177 (386)
T ss_dssp             HTTSEEEEES-T------TS----HHHHHHHHCT----TEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEE
T ss_pred             ccCcEEEEeC-c------hh----HHHHHhhccc----cceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEee
Confidence            1244332211 0      22    5778887753    7899999998888777776    999999999999 999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCH--HHHHhhcCCcccccCCC--ChHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTP--EIAEVLTRRNYFNTFGG--NPVCTAAGHA  366 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~--~i~~~l~~~~~~~T~~~--np~a~aaala  366 (447)
                      ......       +.++.+..-.||++  +.|-++| | .-.|+++++.  ++++.+...  ...++.  +|..+...+.
T Consensus       178 nT~atp-------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~--~~~~G~~~~p~da~ll~r  248 (386)
T PF01053_consen  178 NTFATP-------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF--RRLLGATLSPFDAWLLLR  248 (386)
T ss_dssp             CTTTHT-------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH--HHHHT-B--HHHHHHHHH
T ss_pred             ccccce-------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcch--hhhcCccchHHHHHHHhc
Confidence            987421       11222223368886  5699985 3 5677777654  677665421  122222  3555554444


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe------------------ecceeEEEEEeeCCCCCCCCHHH
Q 013235          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR------------------GRGFLLGVEFVTDRQLKTPAKAE  428 (447)
Q Consensus       367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------g~Gl~~giel~~~~~~~~p~~~~  428 (447)
                      .|+.+.  -.+++..+.+..+    .+..++|+.+..|.                  |.|-|+.|+|....       +.
T Consensus       249 gl~Tl~--~R~~~~~~nA~~l----A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~-------~~  315 (386)
T PF01053_consen  249 GLRTLP--LRMERQNENAEAL----AEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE-------EA  315 (386)
T ss_dssp             HHTTHH--HHHHHHHHHHHHH----HHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-------HH
T ss_pred             CCCcHH--HHHHHHHHHHHHH----HHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch-------hh
Confidence            443321  1123333333333    33334566666554                  66679999995431       24


Q ss_pred             HHHHHHHH
Q 013235          429 TLYIMDKM  436 (447)
Q Consensus       429 ~~~~~~~l  436 (447)
                      +.++.+.|
T Consensus       316 ~~~f~~~l  323 (386)
T PF01053_consen  316 ARRFLDAL  323 (386)
T ss_dssp             HHHHHHH-
T ss_pred             hHhHHhhh
Confidence            55666655

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.21  E-value=1.9e-09  Score=110.33  Aligned_cols=153  Identities=18%  Similarity=0.133  Sum_probs=102.9

Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      ..+|...+|+++|+++.++  +.++.++||+.|+.+++...  ...++.||+...+|.+........         ....
T Consensus        58 ~~nPtv~~lE~~la~leg~--~~av~~~SG~aAi~~al~al--l~~GD~VI~~~~~Y~~T~~~~~~~---------l~~~  124 (432)
T PRK06702         58 IGNPTLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLNI--CSSGDHLLCSSTVYGGTFNLFGVS---------LRKL  124 (432)
T ss_pred             CCCcHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHh--cCCCCEEEECCCchHHHHHHHHHH---------HHHC
Confidence            3478899999999999854  45778999999999999744  245688999999986544321110         0011


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~  297 (447)
                      |+..... +     +..|    .+++++.|..    ++.+|++|...++.+.+..    +++|.++|+++|+++|+|+++
T Consensus       125 Gi~v~~v-d-----~~~d----~~~l~~~I~~----~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~  186 (432)
T PRK06702        125 GIDVTFF-N-----PNLT----ADEIVALAND----KTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTL  186 (432)
T ss_pred             CCEEEEE-C-----CCCC----HHHHHHhCCc----CCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCC
Confidence            3322211 0     1113    4667777752    5668888986666676666    999999999999999999997


Q ss_pred             cCccccCCCcccccccCCCCCEEE--eeccccC
Q 013235          298 AGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN  328 (447)
Q Consensus       298 tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~  328 (447)
                      .    +.   ..++-+..-.||++  ++|-++|
T Consensus       187 ~----tP---~~~~pl~~GADIvv~S~TKy~~G  212 (432)
T PRK06702        187 A----TP---YLCQAFEHGANIIVHSTTKYIDG  212 (432)
T ss_pred             C----ch---hhCChhhcCCCEEEEccccccCC
Confidence            3    22   22333334458775  7798875

>PRK04311 selenocysteine synthase; Provisional

Probab=99.20  E-value=3.4e-09  Score=109.51  Aligned_cols=222  Identities=16%  Similarity=0.117  Sum_probs=128.2

Q ss_pred             CHHHHHHHHHHHHhcccccc----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcC
Q 013235          117 HPYVVDSIVNQIKRIQHSTV----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~  192 (447)
                      ++++.+|+.+.+..+.....    .-..+...++++.|+++++.  +.++++|||+.|+..++..   ..++++||+.++
T Consensus        99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--e~a~vv~sgtaAl~l~l~~---l~~GdeVIvs~~  173 (464)
T PRK04311         99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--EDALVVNNNAAAVLLALNA---LAAGKEVIVSRG  173 (464)
T ss_pred             CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH---hCCCCEEEEcch
Confidence            58999999988776531110    01123456788999988853  4678899999999988853   245678888776


Q ss_pred             Ccc--cCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccC--CCc
Q 013235          193 AYH--GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG--VGG  268 (447)
Q Consensus       193 ~yH--G~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~--~gG  268 (447)
                      .+.  |.+.....         .....|+.........+    .+    .+++++.+.   + ++++++++...+  ..|
T Consensus       174 e~~~~ggs~~i~~---------~~~~~G~~l~~v~~~~~----t~----~~dle~aI~---~-~TklV~~vh~sN~~i~G  232 (464)
T PRK04311        174 ELVEIGGAFRIPD---------VMRQAGARLVEVGTTNR----TH----LRDYEQAIN---E-NTALLLKVHTSNYRIEG  232 (464)
T ss_pred             hhhhcCcchhhHH---------HHHHCCcEEEEECCCCC----CC----HHHHHHhcC---c-cCeEEEEEcCCCccccc
Confidence            433  22211000         00112333322211000    12    567777764   2 456666665433  234


Q ss_pred             e--eeCCCChHHHHHHHHHHhCCEEEEeccccCccccC-----CCcccccccCCCCCEEEee--ccccCCccccccccCH
Q 013235          269 I--IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-----SHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP  339 (447)
Q Consensus       269 ~--~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G-----~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~  339 (447)
                      .  ..+    +++|.++|++||+++|+|....-++-.+     ......+....-.|++++|  |.++|.. .|++++++
T Consensus       233 ~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~-~G~i~g~~  307 (464)
T PRK04311        233 FTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ-AGIIVGKK  307 (464)
T ss_pred             cCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc-eEEEEEcH
Confidence            2  334    9999999999999999999421111111     0111111122346999998  9988653 78888999


Q ss_pred             HHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          340 EIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       340 ~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      ++++.+......-.+..+-...++-.++|.
T Consensus       308 ~li~~l~~~~~~r~lr~dk~~l~~l~~~l~  337 (464)
T PRK04311        308 ELIARLKKHPLKRALRVDKLTLAALEATLR  337 (464)
T ss_pred             HHHHHHhhchhHHHHhcchHHHHHHHHHHH
Confidence            999877643333333334444455555554

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.18  E-value=6.5e-09  Score=105.44  Aligned_cols=285  Identities=14%  Similarity=0.119  Sum_probs=155.5

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      ....|||+.+-.++       +...++-   .......-..| -++...+|.+++++.+  +.+.+++++||+.|...+.
T Consensus        36 ~~~v~iDLltDsgT-------~aMs~~q---~a~~~~GDe~yag~~s~~~lE~~va~~~--G~~~av~v~sGT~Al~ll~  103 (450)
T TIGR02618        36 SEDVYIDLLTDSGT-------NAMSDKQ---WAGLMMGDEAYAGSRNFYHLERTVRELY--GFKYVVPTHQGRGAENLLS  103 (450)
T ss_pred             cCceEEEcccCCCc-------HHHHHHH---HHHhhhcchhhcCCCcHHHHHHHHHHHH--CCCeEEEcCCHHHHHHHHH
Confidence            34589999976654       3333331   22221111123 3667789999999999  4678999999999977643


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC---CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ---TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~---~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (447)
                         ....++.+.| ..+.|.-.+.......+. .+ .+.+.   .+..   ..++..  ++-|    .++|++.|.....
T Consensus       104 ---~l~l~pGDeV-psn~~f~Tt~ahIe~~Ga-v~-vDi~~dea~~~~---~~~p~~--GniD----~~~Le~aI~~~~~  168 (450)
T TIGR02618       104 ---QIAIKPGDYV-PGNMYFTTTRYHQEKNGA-TF-VDIIIDEAHDAQ---LNIPFK--GNVD----LKKLQKLIDEVGA  168 (450)
T ss_pred             ---HhCCCCcCEE-CCceeHHHHHHHHHhCCe-EE-Eeeecccccccc---cCCCCC--CCcC----HHHHHHHhccccC
Confidence               2222333444 333332333222222221 00 00000   0000   011111  1224    6778888865333


Q ss_pred             CCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc-------cCCCcccccc------cCCCCC
Q 013235          253 GHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR-------TGSHFWGFEA------HGVVPD  318 (447)
Q Consensus       253 ~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr-------~G~~~~~~~~------~gv~pD  318 (447)
                      .+++.+.+| +++..||. +.+...+++++++|++||+.||.|-++. |+-       .. ..+....      .--.-|
T Consensus       169 ~~~~lV~~e~t~N~~GG~-pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~-g~~~~~i~ei~~e~~~~aD  245 (450)
T TIGR02618       169 DKIPYICLAVTVNLAGGQ-PVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQ-GYEDKSIAEILKEMMSYAD  245 (450)
T ss_pred             cccCceEEEEecccCCCe-eCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccc-cccCCCHHHHHHHHhccCc
Confidence            344555555 45444564 4577889999999999999999999875 321       00 0110000      011346


Q ss_pred             EEEeecccc-CCcccccccc--CHHHHHhhcCC----cccccCCCChH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013235          319 IVTMAKGIG-NGIPLGAVVT--TPEIAEVLTRR----NYFNTFGGNPV-CTAAGHAVLKVIQKDKLQNNAHVVGSYLKER  390 (447)
Q Consensus       319 ivt~sK~lg-~G~pigav~~--~~~i~~~l~~~----~~~~T~~~np~-a~aaala~L~~i~~~~l~~~~~~~g~~l~~~  390 (447)
                      . +++|+.- +|.|+|.+++  ++++++.....    ..+.|+++=.- .+.+..-.|+...+..+.++.....++|.++
T Consensus       246 ~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~  324 (450)
T TIGR02618       246 G-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDK  324 (450)
T ss_pred             E-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            6 4556654 3567777665  67777766542    23356666222 2333333465554556677777778888888


Q ss_pred             HHHHHHhcCCeeeEeecceeEEEEEe
Q 013235          391 LTALKDKYGIIGDVRGRGFLLGVEFV  416 (447)
Q Consensus       391 L~~l~~~~~~i~~vrg~Gl~~giel~  416 (447)
                      |.+.  ..+++.  +..|.++.|+..
T Consensus       325 L~~~--Gvpv~~--p~ggh~V~vda~  346 (450)
T TIGR02618       325 LKAA--GVPIVE--PVGGHAVFLDAR  346 (450)
T ss_pred             HHHC--CCcccC--CCCcceEEEEhH
Confidence            8886  444433  445566666654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK02769 histidine decarboxylase; Provisional

Probab=99.17  E-value=6.4e-09  Score=105.19  Aligned_cols=226  Identities=17%  Similarity=0.138  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHhCCCCCce--EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe
Q 013235          142 AIADFAEALASKMPGNLKV--VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~--v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~  219 (447)
                      ...+..+.+++++..+.+.  .+|+++|||+|..|+..+|.+.++.. |+....-|-+...+...-+.          +.
T Consensus        66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~-ii~s~~~H~Sv~ka~~~lg~----------~~  134 (380)
T PRK02769         66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGT-LYYSKDTHYSVSKIARLLRI----------KS  134 (380)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcE-EEeCCCceehHHHHHHHcCC----------CC
Confidence            4456667777777544333  48999999999999999987544444 44555556555444332221          11


Q ss_pred             EeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC---CEEEEecc
Q 013235          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG---GLCIADEV  296 (447)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g---~llI~DEv  296 (447)
                      ..++....    ..-|    .++|++.+... ..++.+|++.-...+.|.+.|    +++|.++|+++|   +++.+|-+
T Consensus       135 ~~V~~~~~----g~id----~~~L~~~i~~~-~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA  201 (380)
T PRK02769        135 RVITSLPN----GEID----YDDLISKIKEN-KNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAA  201 (380)
T ss_pred             ceeccCCC----CcCc----HHHHHHHHHhC-CCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEec
Confidence            22222111    1123    67788877654 335778888888888999988    999999999998   69999999


Q ss_pred             ccCcccc---CCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCC-c----ccccCCCC--hHHHHHH
Q 013235          297 QAGFART---GSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRR-N----YFNTFGGN--PVCTAAG  364 (447)
Q Consensus       297 ~tGfgr~---G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~-~----~~~T~~~n--p~a~aaa  364 (447)
                      |.|+-.-   ....+.+..   ..|.++++  |-+++-.+.|+++.+++..+.+... .    .-.|+.|.  ..+.++.
T Consensus       202 ~gg~~~p~~~~~~~~d~~~---~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~l  278 (380)
T PRK02769        202 LSGMILPFVNNPPPFSFAD---GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLL  278 (380)
T ss_pred             ccceeecccCccccCCccC---CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHH
Confidence            9874210   000122211   46988887  7665557889999988776655321 1    11244444  3455556


Q ss_pred             HHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 013235          365 HAVLKVIQKDK---LQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       365 la~L~~i~~~~---l~~~~~~~g~~l~~~L~~l  394 (447)
                      -++|+.+..++   ..+++.++.++|.++|++.
T Consensus       279 w~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~  311 (380)
T PRK02769        279 WAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN  311 (380)
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            67777776554   4567778888888888663

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.15  E-value=2e-09  Score=108.97  Aligned_cols=234  Identities=15%  Similarity=0.107  Sum_probs=146.4

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-+  .+.+++++||+.|+.+++...  ...++.||+....|++........         ..
T Consensus        57 sR~~nPt~~~le~~la~LEg--~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~---------l~  123 (395)
T PRK08114         57 GRRGTLTHFSLQEAMCELEG--GAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKI---------LS  123 (395)
T ss_pred             cCCCChhHHHHHHHHHHHhC--CCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHH---------HH
Confidence            34467888899999998864  356778899999999988643  335678888777776554332110         01


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC--CEEEE
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLCIA  293 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g--~llI~  293 (447)
                      ..|+.....+.       .|    .+++++.++    +++.+|++|.+.++.|.+.+    +++|.++|+++|  +++|+
T Consensus       124 ~~Gi~v~~vd~-------~d----~~~l~~~l~----~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvV  184 (395)
T PRK08114        124 KLGVTTTWFDP-------LI----GADIAKLIQ----PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMI  184 (395)
T ss_pred             hcCcEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEE
Confidence            12332221110       22    356777664    25789999999999999998    999999999985  99999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEEe--eccccC-C-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      |.+++    +| ..  ++-...-.|+++.  .|.++| | .-.|+++.++++.+.+.......--..+|..+...+..|+
T Consensus       185 DnT~a----~p-~~--~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~  257 (395)
T PRK08114        185 DNTWA----AG-VL--FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLR  257 (395)
T ss_pred             ECCCc----cc-cc--cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCC
Confidence            99985    23 22  3333344699875  599986 3 6778777788766554421111111235777666554444


Q ss_pred             HHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------EeecceeEEEEEe
Q 013235          370 VIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (447)
Q Consensus       370 ~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~Gl~~giel~  416 (447)
                      .+.  =+...+++.++.++|+        +|+.+..                  ..|.|-|+.+++.
T Consensus       258 TL~lR~~~~~~na~~va~~L~--------~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~  316 (395)
T PRK08114        258 TLGVRLRQHEESSLKVAEWLA--------EHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK  316 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH--------cCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence            331  1223344444444443        2333321                  2467889999985

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.14  E-value=2.2e-09  Score=109.32  Aligned_cols=193  Identities=18%  Similarity=0.092  Sum_probs=118.9

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      +..++...+|+++|+++.+.. . .+.++||+.|+.+++.+   ...+++||+.++.|++.........         ..
T Consensus        50 r~~~p~~~~le~~lA~l~g~~-~-~v~~~sG~~ai~~~l~~---l~~Gd~Vlv~~~~y~~~~~~~~~~~---------~~  115 (390)
T PRK08064         50 RSGNPTREALEDIIAELEGGT-K-GFAFASGMAAISTAFLL---LSKGDHVLISEDVYGGTYRMITEVL---------SR  115 (390)
T ss_pred             CCCChhHHHHHHHHHHHhCCC-C-eEEECCHHHHHHHHHHH---hCCCCEEEEccCccchHHHHHHHHH---------HH
Confidence            345677888999999988643 3 45679999999988852   2356789999998876543221110         00


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+.....+.       .|    .+++++.+.    .++.+|++|...++.|.+.+    +++|.++|+++|+++|+||+
T Consensus       116 ~G~~v~~v~~-------~d----~~~l~~~l~----~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a  176 (390)
T PRK08064        116 FGIEHTFVDM-------TN----LEEVAQNIK----PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNT  176 (390)
T ss_pred             cCCEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECC
Confidence            1222222111       12    456666553    25678888888888888876    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEE--eeccccC--Ccccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      |..+. .. .  .. .+|  .|+++  ++|.++|  |.-.|++++ ++++++.+...........+|..+..++..++
T Consensus       177 ~~~~~-~~-~--~~-~~g--~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~  247 (390)
T PRK08064        177 FLTPL-LQ-K--PL-DLG--ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLK  247 (390)
T ss_pred             CCccc-cc-C--ch-hhC--CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC
Confidence            86431 11 1  11 123  58875  5699874  333465555 46777766532221122234555554444443

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.13  E-value=1.2e-08  Score=105.11  Aligned_cols=221  Identities=16%  Similarity=0.142  Sum_probs=126.4

Q ss_pred             CCHHHHHHHHHHHHhccccc----ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          116 CHPYVVDSIVNQIKRIQHST----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~----~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      -++++.+|+.+.+..+....    ..-....+.+++++|+++++.  +..+++|||+.|+.+++..   ...+++||+.+
T Consensus        93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga--e~alvv~sg~aAi~l~l~~---l~~GdeVIvs~  167 (454)
T TIGR00474        93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA--EDALVVNNNAAAVLLALNT---LAKGKEVIVSR  167 (454)
T ss_pred             CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH---hCCcCEEEECC
Confidence            46999999998887653100    001124457888999998854  4466789999999888853   34667888877


Q ss_pred             CCc--ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccC--CC
Q 013235          192 NAY--HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG--VG  267 (447)
Q Consensus       192 ~~y--HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~--~g  267 (447)
                      +.+  +|.+......         ....|+.....+..-.    .+    .+++++.+.   + ++++++++...+  ..
T Consensus       168 ~e~v~~ggs~~i~~~---------~~~~G~~~~~v~~~~~----~~----l~dle~aI~---~-~T~lv~~~h~sN~~~~  226 (454)
T TIGR00474       168 GELVEIGGSFRIPDV---------MEQSGAKLVEVGTTNR----TH----LKDYEDAIT---E-NTALLLKVHTSNYRIV  226 (454)
T ss_pred             ChhhhhcchhhHHHH---------HHHcCCEEEEeCCCCC----CC----HHHHHHhcC---c-CCEEEEEEccCccccc
Confidence            664  2222111000         0112333332211000    12    566776664   2 456666665433  34


Q ss_pred             ce--eeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC-ccc-------ccccCCCCCEEEee--ccccCCcccccc
Q 013235          268 GI--IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWG-------FEAHGVVPDIVTMA--KGIGNGIPLGAV  335 (447)
Q Consensus       268 G~--~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~-~~~-------~~~~gv~pDivt~s--K~lg~G~pigav  335 (447)
                      |.  +.+    +++|.++|++||+++|+|-.   +|-.+.. -|+       .+....-.|++++|  |.++|. -.|++
T Consensus       227 G~~~~~d----l~~I~~la~~~g~~vivD~~---sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i  298 (454)
T TIGR00474       227 GFTEEVS----IAELVALGREHGLPVMEDLG---SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QAGII  298 (454)
T ss_pred             CCCCCCC----HHHHHHHHHHcCCeEEEECC---CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eEEEE
Confidence            53  444    99999999999999999963   3222210 011       11122346999999  999764 36888


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      ++++++++.+......-.+-.+-+..++..++|..
T Consensus       299 ~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~  333 (454)
T TIGR00474       299 VGKKELIERLKKNPLTRALRVDKLTLAALEATLRL  333 (454)
T ss_pred             EECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHH
Confidence            89998887765432222222333334444444443

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.12  E-value=1.1e-08  Score=104.09  Aligned_cols=284  Identities=16%  Similarity=0.129  Sum_probs=151.6

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      ....|||+.+-.++.       ...++....+....   ..| -++...+|.+.+++++  +.+.+++++||+.|+..+.
T Consensus        43 ~~~v~IDLlSDS~T~-------aMs~~q~a~~~vGD---d~Yagd~s~~~LE~~vAe~l--G~e~aV~v~sGTaAl~ll~  110 (460)
T PRK13237         43 SEDVYIDLLTDSGTN-------AMSDRQWAGMMIGD---EAYAGSRNFYHLEETVQEYY--GFKHVVPTHQGRGAENLLS  110 (460)
T ss_pred             cCcEEEECcccCCch-------hccHHHHHHHhhcc---hhhcCCCcHHHHHHHHHHHH--CCCeEEEeCCHHHHHHHHH
Confidence            445899999877652       22223222222211   122 2567789999999999  4678999999999999864


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhh-hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~-~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      .+   ..++.++|  .+.+|-.+..+ ....+. .+ .+....+......+++..  ++-|    .+.|++.|....+.+
T Consensus       111 ~l---~v~pGd~V--p~n~~f~Tt~ahI~~~Ga-~f-vDi~~d~a~~~~~~~p~t--gnlD----~d~Le~~I~~~~~~~  177 (460)
T PRK13237        111 RI---AIKPGQYV--PGNMYFTTTRYHQELNGG-IF-VDIIIDEAHDAQSDHPFK--GNVD----LDKLQALIDEVGAEN  177 (460)
T ss_pred             Hh---CCCCcCEE--CCccchHhhHHHHHhCCc-EE-EeeecccccccccCCCCC--CCcC----HHHHHHHhccccCCc
Confidence            32   22333443  33334333322 222211 00 000000000000111111  2234    677888887543445


Q ss_pred             eEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc-------ccCCCccccc------ccCCCCCEE
Q 013235          255 VAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA-------RTGSHFWGFE------AHGVVPDIV  320 (447)
Q Consensus       255 ~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg-------r~G~~~~~~~------~~gv~pDiv  320 (447)
                      ++.+.++ +++..|| .+.|...+++++++|++||+.||.|-++. +|       |.. .+++-.      ...-.-|++
T Consensus       178 ~~lV~a~itvn~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~-~y~~~~i~ei~~e~~s~aD~~  254 (460)
T PRK13237        178 IAYICLAVTVNLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREE-GYQDKSIKEIVHEMFSYADGC  254 (460)
T ss_pred             cCceEEEEecccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhccccc-ccCCCcHhHHhhhccCcCcEE
Confidence            5544444 4554455 44567789999999999999999999885 44       111 111111      112246999


Q ss_pred             Eee--ccccCCccc-ccccc-CHHHHHhhcCC----cccccCCCChHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235          321 TMA--KGIGNGIPL-GAVVT-TPEIAEVLTRR----NYFNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       321 t~s--K~lg~G~pi-gav~~-~~~i~~~l~~~----~~~~T~~~np~a~aaala-~L~~i~~~~l~~~~~~~g~~l~~~L  391 (447)
                      |||  |.++  .++ |++++ ++++++.+...    ..+.||+|-.---..|++ .|+...++++.++.-...++|.+.|
T Consensus       255 t~S~~K~~~--~~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L  332 (460)
T PRK13237        255 TMSGKKDCL--VNIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKL  332 (460)
T ss_pred             EEeCCCCCC--CCCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            887  5443  344 44554 46677666543    234677774221112222 3544445567766666778888877


Q ss_pred             HHHHHhcCCeeeEeecceeEEEE
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                      .+.  ..+++..  ..|.-+.|+
T Consensus       333 ~~~--Gvpv~~p--~ggH~v~vd  351 (460)
T PRK13237        333 LAA--GVPIVEP--VGGHAVFLD  351 (460)
T ss_pred             HHC--CCceecC--CCceEEEEE
Confidence            765  3444443  334333344

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.10  E-value=2.4e-08  Score=110.76  Aligned_cols=268  Identities=15%  Similarity=0.186  Sum_probs=165.6

Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHH----HHHHHHHHHHHhhcC--CCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGT----EANELAIMMARLYTG--CNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGs----eA~e~Aik~ar~~t~--~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      ...+.++.+.|+++++  .+.|.|.++.+    +|+..+++......|  ++++|+...+-||.-.......+.      
T Consensus       567 ~~~~~~~r~~la~i~g--~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~------  638 (993)
T PLN02414        567 QEMFEDLGDLLCEITG--FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGM------  638 (993)
T ss_pred             HHHHHHHHHHHHHHhC--CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCC------
Confidence            3456789999999984  58888888777    788888876643322  234677778899988766654221      


Q ss_pred             ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                          .+..++..  ..+  ..|    +++|++.++.. .+++++|++.-..+.+|.+.+    +++|.++|+++|+++++
T Consensus       639 ----~vv~v~~d--~~G--~vD----le~L~~~i~~~-~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~v  701 (993)
T PLN02414        639 ----KIVVVGTD--AKG--NIN----IEELRKAAEAH-KDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYM  701 (993)
T ss_pred             ----EEEEeccC--CCC--CcC----HHHHHHHHhcc-CCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEE
Confidence                23333331  111  123    67888888643 236888888877778888877    99999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEEe--ecccc-----CCccccccccCHHHHHhhcCCcc--------------cc
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIG-----NGIPLGAVVTTPEIAEVLTRRNY--------------FN  352 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg-----~G~pigav~~~~~i~~~l~~~~~--------------~~  352 (447)
                      |-+|. .+-.|  +  ..-...-.|++++  .|.++     ||--+|.+.+++++...+.....              ..
T Consensus       702 DgAq~-~a~~~--l--~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iG  776 (993)
T PLN02414        702 DGANM-NAQVG--L--TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLG  776 (993)
T ss_pred             EecCH-HhccC--c--CCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcC
Confidence            99985 22112  1  1111233599987  48775     34558999999988776653210              12


Q ss_pred             c----CCCChHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCC
Q 013235          353 T----FGGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTP  424 (447)
Q Consensus       353 T----~~~np~a~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p  424 (447)
                      |    +.|+.+.+.++..-++.+-.+++   .+++..+..|++++|.+.   ++...  .+ .|. +.=||.-+-. ..|
T Consensus       777 t~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~~--~~~~~~-~~hEfv~~~~-~l~  849 (993)
T PLN02414        777 TISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVLF--RGKNGT-CAHEFIIDLR-PFK  849 (993)
T ss_pred             CccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCccc--cCCCCC-eeeeEEEecc-ccc
Confidence            2    22444555555666666655666   667778888999988763   33221  11 121 1112221110 001


Q ss_pred             C--HHHHHHHHHHHHhCCceee
Q 013235          425 A--KAETLYIMDKMKGICALFF  444 (447)
Q Consensus       425 ~--~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .  ...+..+.+.|++.|+...
T Consensus       850 ~~~g~~~~di~krL~d~Gihap  871 (993)
T PLN02414        850 NTAGIEPEDVAKRLMDYGFHAP  871 (993)
T ss_pred             cccCCCHHHHHHHHHHcCcEEe
Confidence            0  0123668899999998764

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.10  E-value=1.3e-08  Score=101.38  Aligned_cols=273  Identities=19%  Similarity=0.191  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      .+..+++.+.++..+.++    -+...++++++++++  +.+.++.++|||.|+.+|++..- ..+++.||+..-+|-..
T Consensus        15 ~~e~~~v~~vl~sg~i~~----G~~v~~FE~~~ae~~--G~k~ava~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvAT   87 (374)
T COG0399          15 EEELAAVQEVLKSGWLTG----GPFVRRFEQAFAEYL--GVKYAVAVSSGTAALHLALLALA-IGPGDEVIVPSFTFVAT   87 (374)
T ss_pred             hHHHHHHHHHHHcCCeec----ChHHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHhcC-CCCCCEEEecCCchHHH
Confidence            456667777777654432    466788999999998  45788899999999999998544 55678898887777544


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      ....+..+..+.           .+   |.....|+-|    .+.+|+.|..    ++.|||.=-..|   ..+.    +
T Consensus        88 an~i~~~Ga~PV-----------Fv---Did~~T~nid----~~~ie~aIt~----~tKAIipVhl~G---~~~d----m  138 (374)
T COG0399          88 ANAVLLVGAKPV-----------FV---DIDPDTLNID----PDLIEAAITP----RTKAIIPVHLAG---QPCD----M  138 (374)
T ss_pred             HHHHHHcCCeEE-----------EE---ecCCcccCCC----HHHHHHHccc----CCeEEEEehhcc---CCCC----H
Confidence            433333322111           11   1111123334    5678887753    366666544444   3333    8


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcC-Cccc
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTR-RNYF  351 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~-~~~~  351 (447)
                      +.|.++|++||++||.|-+|+ +|-+    +.-...|-.-|+.+||    |.|+.| ==|+++++ +++++.+.. +.|+
T Consensus       139 ~~i~~la~~~~l~vIEDaAqa-~Ga~----y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG  212 (374)
T COG0399         139 DAIMALAKRHGLPVIEDAAQA-HGAT----YKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHG  212 (374)
T ss_pred             HHHHHHHHHcCCeEEEEcchh-ccCe----ecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhC
Confidence            999999999999999999995 5421    1123445566888887    999854 33667765 556554432 1111


Q ss_pred             ---------------ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec-c--eeEEE
Q 013235          352 ---------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-G--FLLGV  413 (447)
Q Consensus       352 ---------------~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-G--l~~gi  413 (447)
                                     .-+.-+-+.+|.+++.|+.++  ++.++-+++.+++.+.|+++.. ........+. .  -+..+
T Consensus       213 ~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~--~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~~~~~i  289 (374)
T COG0399         213 LSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLD--EINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAWHLYTI  289 (374)
T ss_pred             cCCCccccceeeecccccCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeeeeeeEE
Confidence                           222334777788888888764  4666667777777777776631 1111111111 1  11222


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                      .+...       .....++.+.|.++||.
T Consensus       290 ~~~~~-------~~~R~~l~~~L~~~gi~  311 (374)
T COG0399         290 LVDEE-------GISRDALMESLKEAGVG  311 (374)
T ss_pred             EecCC-------CCCHHHHHHHHHhCCCC
Confidence            22111       11246789999999876

>PLN03032 serine decarboxylase; Provisional

Probab=99.09  E-value=2.9e-08  Score=99.91  Aligned_cols=227  Identities=17%  Similarity=0.095  Sum_probs=145.1

Q ss_pred             hHHHHHHHHHHHhCCCCCceE--EEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          141 HAIADFAEALASKMPGNLKVV--FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v--~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      ....+..+.+++.+..+.+.+  +|++||||||..|+..+|.+..+ .+++....-|-+...+....+.          +
T Consensus        66 ~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~-~~vi~s~~~H~Sv~kaa~~lg~----------~  134 (374)
T PLN03032         66 QFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRM----------E  134 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCC-cEEEeCCCceeHHHHHHHHcCC----------C
Confidence            344567777778776555554  89999999999999999875433 4666777777666555433321          2


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC-----EEEE
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG-----LCIA  293 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~-----llI~  293 (447)
                      +..++.....    .-|    +++|++.|+.. .+++.+|++.-...+.|.+.|    +++|.++|+++|+     ++.+
T Consensus       135 ~~~V~~d~~g----~id----~~~L~~~i~~~-~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHv  201 (374)
T PLN03032        135 AVKVPTLPSG----EID----YDDLERALAKN-RDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHC  201 (374)
T ss_pred             CeEeeeCCCC----cCc----HHHHHHHHHHc-CCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEE
Confidence            3333321111    123    67788888643 235667777777778899987    9999999999974     7999


Q ss_pred             eccccCccc--cC-CCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc-c----cccCCCC--hHHH
Q 013235          294 DEVQAGFAR--TG-SHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-Y----FNTFGGN--PVCT  361 (447)
Q Consensus       294 DEv~tGfgr--~G-~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~-~----~~T~~~n--p~a~  361 (447)
                      |-+|.|+--  .. ...+.+   ....|.++++  |-++.-.+.|+++.+++..+.+.... +    -.|..|+  ....
T Consensus       202 DaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~  278 (374)
T PLN03032        202 DGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAP  278 (374)
T ss_pred             EccchhhhhhccCCCcccCC---CcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHH
Confidence            999976411  00 001111   1246888877  75554567888999887776554321 1    1345554  2445


Q ss_pred             HHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 013235          362 AAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       362 aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l  394 (447)
                      +..-++|+.+-.++   ..+++.++.++|.++|++.
T Consensus       279 l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~  314 (374)
T PLN03032        279 LYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA  314 (374)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55556677665554   4566777788888888774

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.07  E-value=3.5e-09  Score=105.30  Aligned_cols=203  Identities=19%  Similarity=0.249  Sum_probs=138.0

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccccc-cc---chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVL-YL---NHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~~-~~---~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~  173 (447)
                      ..|||..+      .|-++|+|.+|+.+.+.... ..... |.   .+...+-++.++++.+.+.++|+|++++||+|..
T Consensus        44 ~vyld~~a------t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl  117 (428)
T KOG1549|consen   44 PVYLDNQA------TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL  117 (428)
T ss_pred             cEEEecCc------CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence            36888653      45579999999998776642 11112 22   2235667788888888877779999999999999


Q ss_pred             HHHH-HHhhcC-CC-eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          174 AIMM-ARLYTG-CN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       174 Aik~-ar~~t~-~~-~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +++- ++.+.. .+ .||.++..|-....+...+-..        ...+..+|.++..        ...++.+++.|+  
T Consensus       118 vl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~--------g~~Vt~lpv~~~~--------~~d~~~~~~~i~--  179 (428)
T KOG1549|consen  118 VLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEE--------GLEVTYLPVEDSG--------LVDISKLREAIR--  179 (428)
T ss_pred             HHHHhhccccccccceEEEecccCcchhHHHHHHHhc--------CeEEEEeccCccc--------cccHHHHHHhcC--
Confidence            9974 454432 23 5666655543333333222111        1234555544221        111566777765  


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccC
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN  328 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~  328 (447)
                       + ++.+|+++-++++.|+..|    +++|.++|++.|+.+++|-+|. .   | +. -.+-.++.+|.++++  |.+|.
T Consensus       180 -~-~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-v---G-~i-~vDV~eln~D~~s~s~HK~ygp  247 (428)
T KOG1549|consen  180 -S-KTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-V---G-KI-PVDVQELNADFLSISAHKIYGP  247 (428)
T ss_pred             -C-CceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-c---C-Cc-cccHHHcCchheeeecccccCC
Confidence             3 7889999999999999999    9999999999999999999995 4   4 22 235555678999877  87764


Q ss_pred             -CccccccccCH
Q 013235          329 -GIPLGAVVTTP  339 (447)
Q Consensus       329 -G~pigav~~~~  339 (447)
                       |  +|++.+++
T Consensus       248 ~~--iGaLYvr~  257 (428)
T KOG1549|consen  248 PG--IGALYVRR  257 (428)
T ss_pred             Cc--ceEEEEcc
Confidence             4  88888876

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.07  E-value=1.6e-08  Score=102.40  Aligned_cols=232  Identities=19%  Similarity=0.136  Sum_probs=140.0

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      ++.+|...+|+++++++...  +.++.++||+.|+.+++...  ...++.||+....|.+........         ...
T Consensus        60 r~~~P~~~~lE~~la~leg~--~~av~~sSG~aAi~~al~al--l~~GD~Vl~~~~~yg~t~~~~~~~---------~~~  126 (384)
T PRK06434         60 RWGNPTVQAFEEKYAVLENA--EHALSFSSGMGAITSAILSL--IKKGKRILSISDLYGQTFYFFNKV---------LKT  126 (384)
T ss_pred             CCCChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCccchHHHHHHHH---------HHh
Confidence            34577888999999998843  56789999999999999754  335678888766664433322111         011


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+.....+-       .+    .+.++  ++   ++++.+|++|.+.+..+.+.+    +++|.++|+++|  +++|.+
T Consensus       127 ~Gi~v~fvd~-------~~----~~~~~--l~---~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t  184 (384)
T PRK06434        127 LGIHVDYIDT-------DR----LNSLD--FD---PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDAT  184 (384)
T ss_pred             cCcEEEEECC-------CC----hhhee--ec---CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECC
Confidence            2333222111       00    01121  11   346788999988888877766    999999999998  466999


Q ss_pred             ccCccccCCCcccccccCCCCCEEEee--ccccC-C-cccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN-G-IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~-G-~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      +. -+..      ....+.-.|++++|  |-++| | .-.|++++ ++++.+.+.......-...+|+.++.++..|+.+
T Consensus       185 ~~-s~~~------~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL  257 (384)
T PRK06434        185 FA-SPYN------QNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL  257 (384)
T ss_pred             CC-Cccc------CCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH
Confidence            63 1111      23334557999876  88875 3 44566666 4556554432111112234688888777777655


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------EeecceeEEEEEe
Q 013235          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------VRGRGFLLGVEFV  416 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------vrg~Gl~~giel~  416 (447)
                      .  ..+++-.++...+.+.|+    .++.+..            .+|.|-|+.|++.
T Consensus       258 ~--~R~~r~~~~a~~~a~~L~----~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~  308 (384)
T PRK06434        258 G--LRMEKHNKNGMELARFLR----DSKKISNVYYPDTEIGKKVLRGFGGMLSFELR  308 (384)
T ss_pred             H--HHHHHHHHHHHHHHHHHH----cCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence            3  234444455555544444    3444432            2467889999984

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.06  E-value=2.2e-10  Score=111.48  Aligned_cols=199  Identities=19%  Similarity=0.180  Sum_probs=119.2

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yH  195 (447)
                      .+|++.+|+.+ ... ++. ....++...+|.+++++.++  .+.++|+.||+.||..+++....  +...||+-+. .|
T Consensus         7 ~~~~m~~a~~~-a~~-gd~-~Yg~D~~~~~l~~~i~~l~g--~e~a~f~~sGT~An~~al~~~~~--~~~~vi~~~~-aH   78 (290)
T PF01212_consen    7 PTPAMLEAMAA-ANV-GDD-AYGEDPTTARLEERIAELFG--KEAALFVPSGTMANQLALRAHLR--PGESVICADT-AH   78 (290)
T ss_dssp             S-HHEEHHHHH-TTS-B-C-CTTSSHHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHHHH--TTEEEEEETT-EH
T ss_pred             CCHHHHHHHHc-ccc-CCc-ccCCChhHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHh--cCCceecccc-ce
Confidence            57999999843 332 222 23357888999999999994  56778999999999999986652  4455555443 44


Q ss_pred             cCc--hhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC--CCeEEEEEccccCCCcee
Q 013235          196 GNA--AGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGII  270 (447)
Q Consensus       196 G~~--~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~--~~~aavi~Epi~~~gG~~  270 (447)
                      -..  .++. .+            .|...++.|....+.+  +    .++|++.+.....  .++++|.+|-.....|-.
T Consensus        79 i~~~E~ga~~~~------------~G~~~~~l~~~~~G~l--~----~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~  140 (290)
T PF01212_consen   79 IHFDETGAIEEL------------SGAKLIPLPSDDDGKL--T----PEDLEAAIEEHGAHHPQPAVVSLENTTELAGGT  140 (290)
T ss_dssp             HHHSSTTHHHHH------------TTCEEEEEBECTGTBB-------HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB
T ss_pred             eeeeccchhhHh------------cCcEEEECCCcccCCC--C----HHHHHHHhhhccccCCCccEEEEEecCcCCCCe
Confidence            322  2222 11            2444444333221222  2    6778887765322  478898888766654445


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEeccccCc--cccCCCcccccccCCCCCEEEeeccccCCccccccc-cCHHHHH
Q 013235          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV-TTPEIAE  343 (447)
Q Consensus       271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tGf--gr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~-~~~~i~~  343 (447)
                      +++.+.+++|.++|++||+.|.+|=+--.-  ...| .  .....----|++++|=.-++|.|.|+++ +++++++
T Consensus       141 ~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~--~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~  213 (290)
T PF01212_consen  141 VYSLEELRAISELAREHGLPLHMDGARLANAAAALG-V--SLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIA  213 (290)
T ss_dssp             ---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-H--HHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHH
T ss_pred             eCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-c--cHHHHhhhCCEEEEEEEcccccccceEEEechHHHH
Confidence            668899999999999999999999653110  0001 0  0111123469998764444556666655 6888554

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.06  E-value=5.9e-08  Score=91.84  Aligned_cols=235  Identities=19%  Similarity=0.271  Sum_probs=141.2

Q ss_pred             cccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC-CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235          110 TVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTGCNDII  188 (447)
Q Consensus       110 ~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~-~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii  188 (447)
                      ..++||-||++.+-+.+-++..                   ...+. .......+..||+.+.|.|+--...  +++.|+
T Consensus        38 ~~~lgh~sPe~~qIm~~v~egi-------------------kyVFkT~n~~tf~isgsGh~g~E~al~N~le--Pgd~vL   96 (385)
T KOG2862|consen   38 RPSLGHMSPEFVQIMDEVLEGI-------------------KYVFKTANAQTFVISGSGHSGWEAALVNLLE--PGDNVL   96 (385)
T ss_pred             CCccccCCHHHHHHHHHHHHHH-------------------HHHhccCCCceEEEecCCcchHHHHHHhhcC--CCCeEE
Confidence            3467888887776555443332                   11121 1224567899999999999864433  677777


Q ss_pred             EEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCc
Q 013235          189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG  268 (447)
Q Consensus       189 ~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG  268 (447)
                      ++..+-.|....-+.-      ++.   ..|+.++.+      |+...  -++++++.+.++   ++.+|++--.-+.+|
T Consensus        97 v~~~G~wg~ra~D~~~------r~g---a~V~~v~~~------~G~~~--~le~i~~~lsqh---~p~~vfv~hgdsSTg  156 (385)
T KOG2862|consen   97 VVSTGTWGQRAADCAR------RYG---AEVDVVEAD------IGQAV--PLEEITEKLSQH---KPKAVFVTHGDSSTG  156 (385)
T ss_pred             EEEechHHHHHHHHHH------hhC---ceeeEEecC------cccCc--cHHHHHHHHHhc---CCceEEEEecCcccc
Confidence            7755543333221111      111   134444321      22111  157777777765   455666666666777


Q ss_pred             eeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhc
Q 013235          269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLT  346 (447)
Q Consensus       269 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~  346 (447)
                      +..+   .+...-++|++|++++++|-|-+ +|  | .-|.++.||+  |+.-.+  |+|++---++-+..++...+.+.
T Consensus       157 V~q~---~~~~~g~lc~k~~~lllVD~VaS-lg--g-t~F~mDewgV--DvaytgSQKaL~aP~GLsiisfS~ka~~~~~  227 (385)
T KOG2862|consen  157 VLQD---LLAISGELCHKHEALLLVDTVAS-LG--G-TEFEMDEWGV--DVAYTGSQKALGAPAGLSIISFSDKALEAIR  227 (385)
T ss_pred             ccch---HHHHHHHHhhcCCeEEEEechhh-cC--C-ccceehhhcc--cEEEecchhhcCCCCCcceeecCHHHHHHHh
Confidence            7664   36777899999999999999987 43  3 4566788888  777544  99985222344777888777776


Q ss_pred             CCc------cc-----ccCCC-----------ChHHH-HHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHH
Q 013235          347 RRN------YF-----NTFGG-----------NPVCT-AAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       347 ~~~------~~-----~T~~~-----------np~a~-aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l  394 (447)
                      .+.      ++     .+|.+           .|+.. ....++|+.|-++++   .++-++++++|+..|+++
T Consensus       228 ~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~  301 (385)
T KOG2862|consen  228 DRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL  301 (385)
T ss_pred             hccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            531      11     12221           24433 344577888877654   455667788888888876

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.02  E-value=1.5e-07  Score=96.63  Aligned_cols=295  Identities=14%  Similarity=0.053  Sum_probs=163.1

Q ss_pred             CCHHHHHHHHHHHHhc-ccc-cccccchHHHHHHHHHHHhCCCC-C-ceEEE--cCCHHHHHHHHHHHHHhhc-------
Q 013235          116 CHPYVVDSIVNQIKRI-QHS-TVLYLNHAIADFAEALASKMPGN-L-KVVFF--TNSGTEANELAIMMARLYT-------  182 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~-~~~-~~~~~~~~~~elae~L~~~~~~~-~-~~v~~--~~sGseA~e~Aik~ar~~t-------  182 (447)
                      .+|++.+++...++.. .+. +.........+..+.+++.++.+ . +.+.|  ++||||||..||+.+|...       
T Consensus        53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~  132 (431)
T TIGR01788        53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA  132 (431)
T ss_pred             CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999888887632 221 11111345566778888888654 2 34555  7999999999998876321       


Q ss_pred             C---CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          183 G---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       183 ~---~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                      +   ....|+....-|-....+....+          ..+..++... ..  +.-|    .++|++.|..    ++.+|+
T Consensus       133 g~~~~~~~ii~s~~~H~sv~ka~~~lg----------~~v~~i~~d~-~~--~~vd----~~~L~~~i~~----~t~lV~  191 (431)
T TIGR01788       133 GKPTDKPNLVMGSNVQVCWEKFARYFD----------VELREVPMDP-GR--YVID----PEQVVEAVDE----NTIGVV  191 (431)
T ss_pred             CCCCCCcEEEEcCcchHHHHHHHHHcC----------ceeEEEecCC-Cc--eeeC----HHHHHHHHhh----CCeEEE
Confidence            1   12244455555544433322211          1233343211 10  0123    5778877753    456788


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHh------CCEEEEeccccCccc---cCCCcccccccCCCCCEEEee--ccccC
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KGIGN  328 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tGfgr---~G~~~~~~~~~gv~pDivt~s--K~lg~  328 (447)
                      +.-.+++.|.+.|    +++|.++|+++      |+++.+|-+|.|+-.   .++..+.+.  ....|.++++  |-+.+
T Consensus       192 ~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~~  265 (431)
T TIGR01788       192 CILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGLV  265 (431)
T ss_pred             EEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccCC
Confidence            8888899999998    99999999999      999999999987431   231111222  1245888877  75434


Q ss_pred             CccccccccCHH--HHHhhcCC-------cccccCCCC-hH-HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 013235          329 GIPLGAVVTTPE--IAEVLTRR-------NYFNTFGGN-PV-CTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       329 G~pigav~~~~~--i~~~l~~~-------~~~~T~~~n-p~-a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l  394 (447)
                      ...+|+++.+++  +.+.+...       ....|..+. +. ..+..-.+|..+-.++   +.++..++.++|.++|+++
T Consensus       266 P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~  345 (431)
T TIGR01788       266 YPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKL  345 (431)
T ss_pred             CCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            456788777654  32332210       000122222 21 2222233444443333   4566677778888777665


Q ss_pred             HHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       395 ~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                       ..+.++...+ .-.++.+.+..+..    ......++.+.|.++|+.+
T Consensus       346 -~~~el~~~~~-~~~iV~Fr~~~~~~----~~~~~~~l~~~L~~~G~~~  388 (431)
T TIGR01788       346 -GPFEIISDGS-GIPLVAFKLKDDAD----PGYTLYDLSHRLRERGWIV  388 (431)
T ss_pred             -CCEEEeeCCC-CceEEEEEeCCCCC----CCcCHHHHHHHHHHCCCcc
Confidence             1122222111 23344455432110    0112456888999999854

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.99  E-value=1.8e-08  Score=103.75  Aligned_cols=162  Identities=20%  Similarity=0.225  Sum_probs=104.4

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      ++.++...+++++|++..+.  +..++++||+.|+.+++...  ...+++||+....|.+........         ...
T Consensus        65 r~~~pt~~~le~~la~l~g~--~~~v~fsSG~~Ai~~al~~l--l~~Gd~VI~~~~~y~~t~~~~~~~---------l~~  131 (437)
T PRK05613         65 RLTNPTVEALENRIASLEGG--VHAVAFASGQAAETAAILNL--AGAGDHIVTSPRLYGGTETLFLVT---------LNR  131 (437)
T ss_pred             CccChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHh--cCCCCEEEECCCccHHHHHHHHHH---------HHh
Confidence            44578888999999998854  56778899999999888643  235677888777776542211110         011


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+.....+++      .|    .+++++.+.   + ++.+|++|...+..|.+.+    +++|.++|+++|+++|+|.+
T Consensus       132 ~Gi~v~~vd~~------~d----~e~l~~~l~---~-~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t  193 (437)
T PRK05613        132 LGIEVTFVENP------DD----PESWQAAVQ---P-NTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNT  193 (437)
T ss_pred             cCeEEEEECCC------CC----HHHHHHhCC---c-cCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECC
Confidence            23333322211      12    456776664   2 4667888887777777777    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEEee--ccccC-Cccccccc
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN-GIPLGAVV  336 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~-G~pigav~  336 (447)
                      +. .|.    ....-.+|  .|++++|  |-++| |--+|.++
T Consensus       194 ~a-~g~----~~~p~~~G--aDivv~S~~K~l~G~gd~~gG~v  229 (437)
T PRK05613        194 IA-TAA----LVRPLELG--ADVVVASLTKFYTGNGSGLGGVL  229 (437)
T ss_pred             Cc-ccc----ccChHHhC--CCEEEeeccceecCCCcceeEEE
Confidence            85 221    11111234  4998765  98876 44344433

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=98.99  E-value=1.6e-08  Score=98.05  Aligned_cols=192  Identities=19%  Similarity=0.188  Sum_probs=128.7

Q ss_pred             cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      ++.+.+++=..++- +++..++.-.+..+|....|+++++.+-.+ .. .+.+.||..|+..||.....  .++.||+-.
T Consensus        34 sy~F~d~~haa~lF-~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG-~a-a~a~aSG~AA~~~ai~~la~--aGD~iVss~  108 (426)
T COG2873          34 SYVFDDTDHAAALF-GLKEPGNIYTRIMNPTTDVLEERIAALEGG-VA-ALAVASGQAAITYAILNLAG--AGDNIVSSS  108 (426)
T ss_pred             eeecCCHHHHHHHh-CCCcCCceeeeccCchHHHHHHHHHHhhcc-hh-hhhhccchHHHHHHHHHhcc--CCCeeEeec
Confidence            34455554333322 345545555567789999999999987643 33 45789999999999864322  467888776


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      .-| |.+....+.+        ++..|+.......       .|    .+.+++.|+.    ++.+|++|.+-++++.++
T Consensus       109 ~LY-GGT~~lf~~t--------l~~~Gi~v~fvd~-------~d----~~~~~~aI~~----nTkavf~EtigNP~~~v~  164 (426)
T COG2873         109 KLY-GGTYNLFSHT--------LKRLGIEVRFVDP-------DD----PENFEAAIDE----NTKAVFAETIGNPGLDVL  164 (426)
T ss_pred             ccc-CchHHHHHHH--------HHhcCcEEEEeCC-------CC----HHHHHHHhCc----ccceEEEEeccCCCcccc
Confidence            666 4444443332        1223443221100       22    5678877763    778999999999999998


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccC-CccccccccCHHHHH
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVTTPEIAE  343 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pigav~~~~~i~~  343 (447)
                      .    ++.|.++|++||+++|+|...+.       .|-++..+--.|||+  ++|-+|| |--||.++....-.|
T Consensus       165 D----ie~ia~iAh~~gvpliVDNT~at-------pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FD  228 (426)
T COG2873         165 D----IEAIAEIAHRHGVPLIVDNTFAT-------PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFD  228 (426)
T ss_pred             C----HHHHHHHHHHcCCcEEEecCCCc-------ceecchhhcCCCEEEEeecccccCCccccceEEEeCCccc
Confidence            7    99999999999999999998752       233444445569985  7799997 788888876443333

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.91  E-value=5.8e-07  Score=98.42  Aligned_cols=262  Identities=13%  Similarity=0.169  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEc-CCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          142 AIADFAEALASKMPGNLKVVFFT-NSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v~~~-~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      .+.||.+.|++++  +++.+-+. +||+.+..++++..|.|      ++|++ +....+-||.........         
T Consensus       544 ~i~elq~~l~eLt--Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~-vLIp~saHgtNpasa~~~---------  611 (954)
T PRK12566        544 MIDELEAWLCAIT--GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDI-CLIPSSAHGTNPASAQMA---------  611 (954)
T ss_pred             HHHHHHHHHHHHH--CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCE-EEecccccccCHHHHHHC---------
Confidence            4567888888888  45655444 59999988888888875      34444 445557777766543322         


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                         |+..+..|....+.  .|    +++|++.+++.. +++++|++.-....|+...+    +++|.++|+++|+++++|
T Consensus       612 ---GieVv~Vp~D~~G~--iD----le~L~a~I~~~~-~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vD  677 (954)
T PRK12566        612 ---GMRVVIVECDPDGN--VD----LDDLKAKAAAAG-DRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMD  677 (954)
T ss_pred             ---CCEEEEeccCCCCC--cC----HHHHHHHhhccC-CCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEE
Confidence               33333332211221  23    678888886443 47777777654444444333    999999999999999999


Q ss_pred             ccccCccccCCCcccccc-cCCCCCEEEee--cccc----CCc-cccccccCHHHHHhhcCCc-------------cccc
Q 013235          295 EVQAGFARTGSHFWGFEA-HGVVPDIVTMA--KGIG----NGI-PLGAVVTTPEIAEVLTRRN-------------YFNT  353 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~-~gv~pDivt~s--K~lg----~G~-pigav~~~~~i~~~l~~~~-------------~~~T  353 (447)
                      -++. .+-.+     ... -.+-.|+++++  |.++    +|. -+|.+..++++...+.+..             ..+.
T Consensus       678 gA~~-~a~~~-----l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~  751 (954)
T PRK12566        678 GANL-NAQVG-----LARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAA  751 (954)
T ss_pred             eeCh-hhccC-----CCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeec
Confidence            9985 22111     121 12345999876  9775    344 4777777776665554211             1123


Q ss_pred             CCCChHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHhcCCeeeEee-cce-e--EEEEEeeCCCCCCCCH
Q 013235          354 FGGNPVCTAAGHAVLKVIQKDKLQN---NAHVVGSYLKERLTALKDKYGIIGDVRG-RGF-L--LGVEFVTDRQLKTPAK  426 (447)
Q Consensus       354 ~~~np~a~aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl-~--~giel~~~~~~~~p~~  426 (447)
                      ..++.+...++..-++.+-.+ +.+   ....+..|+.++|.+   .++...  .+ .|. +  ..+.+..-+.   ...
T Consensus       752 ~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~---~~~v~~--~~~~~~~~hEfii~~~~l~~---~~g  822 (954)
T PRK12566        752 PWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG---AFPVLY--RGRNERVAHECILDLRPLKA---QTG  822 (954)
T ss_pred             ccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh---hCCCCc--CCCCCCeeeEEEEEcccccc---ccC
Confidence            334444444444555544333 322   224567788888866   344333  22 121 1  1222211110   001


Q ss_pred             HHHHHHHHHHHhCCceee
Q 013235          427 AETLYIMDKMKGICALFF  444 (447)
Q Consensus       427 ~~~~~~~~~l~~~Gvlv~  444 (447)
                      ..+..+.+.|++.||...
T Consensus       823 ~~~~dvakRL~d~Gihap  840 (954)
T PRK12566        823 ISEEDVAKRLMDYGFHAP  840 (954)
T ss_pred             CCHHHHHHHHHHCCcEEe
Confidence            123568889999998764

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=98.88  E-value=3.5e-07  Score=85.13  Aligned_cols=224  Identities=18%  Similarity=0.206  Sum_probs=151.3

Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~  219 (447)
                      .|++.++-+.|++++  +.+.+.++++.-||-.++|...   .++.+.++.++.-|-.+.-+.-..+.          .+
T Consensus        60 kPpI~~F~~dlaeFl--g~D~~R~t~GARe~KfavMhal---~~~gd~vV~D~~aHYttyvAAEragl----------~v  124 (382)
T COG1103          60 KPPIKDFLEDLAEFL--GMDEVRVTAGAREAKFAVMHAL---CKEGDWVVVDSLAHYTTYVAAERAGL----------NV  124 (382)
T ss_pred             CCcHHHHHHHHHHHh--CCceeeecccchhhHHHHHHHh---ccCCCEEEEcCcchHHHHHHHHhcCC----------eE
Confidence            467788888899998  5788999999999998888632   35678888999999777655433222          12


Q ss_pred             EeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC
Q 013235          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (447)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG  299 (447)
                      ..+|  +.--..|..+.+.|.+.+++..++. .+.++..++.-+-|+-|.++.    .+++.++|+++|+++++.=+|| 
T Consensus       125 ~eVp--~tg~Pey~i~~e~y~~viee~~~~~-g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-  196 (382)
T COG1103         125 AEVP--NTGYPEYKITPEGYAEVIEEVKDEG-GDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-  196 (382)
T ss_pred             EecC--CCCCCceEecHHHHHHHHHHHHhcc-CCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-
Confidence            2222  1111112246777788888877754 235777777778888888876    8899999999999999999998 


Q ss_pred             ccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc-----------ccccCCCChHHHHHHH-
Q 013235          300 FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-----------YFNTFGGNPVCTAAGH-  365 (447)
Q Consensus       300 fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~-----------~~~T~~~np~a~aaal-  365 (447)
                      .||.-     .....+.+|.++-|  |+++..-|+|...+++|+.+..-..+           .+-|--|-|+....|. 
T Consensus       197 ~Grmp-----vs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASf  271 (382)
T COG1103         197 VGRMP-----VSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASF  271 (382)
T ss_pred             ecccc-----ccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcC
Confidence            66643     23445778999866  99998779999999999988654321           2234445555544332 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013235          366 -AVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       366 -a~L~~i~~~~l~~~~~~~g~~l~~~L~~l  394 (447)
                       .+.+.++  ++-+.+ +..++|.+.|+++
T Consensus       272 P~V~eRVk--rWdeEv-~kaR~fv~elEki  298 (382)
T COG1103         272 PHVVERVK--RWDEEV-EKARWFVAELEKI  298 (382)
T ss_pred             HHHHHHHH--HHHHHH-HHHHHHHHHHHHh
Confidence             2222221  222222 3456677777665

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.88  E-value=6.7e-07  Score=98.38  Aligned_cols=268  Identities=16%  Similarity=0.196  Sum_probs=159.9

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      ....||.+.|+++++-+ ..-++.++|+.+.-+++..+|.|.     +++.++....+-||.-..+....+.        
T Consensus       530 q~i~elq~~l~eltGmd-~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~--------  600 (939)
T TIGR00461       530 ELIAQLEKWLCSITGFD-AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGM--------  600 (939)
T ss_pred             HHHHHHHHHHHHHHCCC-CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCC--------
Confidence            34568888899888433 345677889988888888888752     2345666778889888776544321        


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                        .+..++..  ..+  ..|    +++|++.++..+ +++++|++.-.... |.+.++   +++|.++|+++|+++++|-
T Consensus       601 --~Vv~V~~d--~~G--~iD----le~L~~~i~~~~-~~taaV~iT~pst~-G~~e~~---I~eI~~iah~~G~~v~VDg  665 (939)
T TIGR00461       601 --QVVPVNCD--QDG--NID----LVDLKNKAEQHG-DELAAVMVTYPSTH-GVFEPT---IQHACDIVHSFGGQVYLDG  665 (939)
T ss_pred             --EEEEeccC--CCC--CcC----HHHHHHHHhhcC-CceEEEEEEeCCcC-ceeccc---HHHHHHHHHHcCCEEEEEe
Confidence              22333321  111  124    678888887532 36777776543333 555422   8999999999999999999


Q ss_pred             cccC-ccccCCCcccccc-cCCCCCEEEee--cccc-----CCccccccccCHHHHHhhcCCcc----------------
Q 013235          296 VQAG-FARTGSHFWGFEA-HGVVPDIVTMA--KGIG-----NGIPLGAVVTTPEIAEVLTRRNY----------------  350 (447)
Q Consensus       296 v~tG-fgr~G~~~~~~~~-~gv~pDivt~s--K~lg-----~G~pigav~~~~~i~~~l~~~~~----------------  350 (447)
                      +|.. .+  +     ... -..-.|+++++  |.++     ||--+|.+.+++++...+..+..                
T Consensus       666 Aq~~al~--~-----l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~  738 (939)
T TIGR00461       666 ANMNAQV--G-----LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSV  738 (939)
T ss_pred             cChhhCC--C-----CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccc
Confidence            9853 21  1     111 12345999885  9887     55568888888877665543211                


Q ss_pred             cccCCCChHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEee-CCCCCCCCH
Q 013235          351 FNTFGGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT-DRQLKTPAK  426 (447)
Q Consensus       351 ~~T~~~np~a~aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~-~~~~~~p~~  426 (447)
                      .+.+.++.+.+..+...|..+=.+++.   +..-.+.+|+.++|.+   .++++.  .|..-.+.=||+- -+..+.-..
T Consensus       739 s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~---~~~~l~--~~~~~~~~hEfv~~~~~~~~~~g  813 (939)
T TIGR00461       739 SAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD---HYPILF--VGTLKHVAHECILDLRPLKAKTG  813 (939)
T ss_pred             cccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc---cCcccc--cCCCCceeEEEEEeccchhhhcC
Confidence            122445555555555666666555553   4455677888888876   233322  2211122234431 111000001


Q ss_pred             HHHHHHHHHHHhCCceee
Q 013235          427 AETLYIMDKMKGICALFF  444 (447)
Q Consensus       427 ~~~~~~~~~l~~~Gvlv~  444 (447)
                      ..+..+.++|++.|+...
T Consensus       814 ~~~~dIakrL~d~G~hap  831 (939)
T TIGR00461       814 IEAIDVAKRLQDYGFHAP  831 (939)
T ss_pred             CCHHHHHHHHHhCCeecc
Confidence            235779999999998753

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.87  E-value=3.1e-07  Score=92.65  Aligned_cols=286  Identities=15%  Similarity=0.106  Sum_probs=153.4

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      ...|||+.+-.++.   -..++..+|+..    ..   ..| -++...+|.+..++++  +.+.++++.+|..|+..+.+
T Consensus        40 ~dV~IDLrSDTgT~---apS~~m~aAM~~----GD---D~Y~gdpSv~~Lee~vael~--G~E~alpthqGRgaE~Il~~  107 (467)
T TIGR02617        40 EDVFIDLLTDSGTG---AVTQSMQAAMMR----GD---EAYSGSRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYIP  107 (467)
T ss_pred             CCeEEECccCCCCC---CCCHHHHHHHHc----CC---cccccCchHHHHHHHHHHHh--CCceEEECCCCchHHHHHHH
Confidence            34689999876652   123566666653    21   123 3677889999999999  56788999999999988887


Q ss_pred             HHHhhcCCCeEE------EEcCCcccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          177 MARLYTGCNDII------SLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       177 ~ar~~t~~~~ii------~~~~~yHG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ..-. ..++.++      ++...||-.+. +...+++.....  .........+.+.++++.+  |    +++|++.|..
T Consensus       108 ~~~~-~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~--l~~~ea~~~~~~~~fkG~~--d----l~~le~~I~~  178 (467)
T TIGR02617       108 VLIK-KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARN--VYTKEAFDTGVRYDFKGNF--D----LEGLERGIEE  178 (467)
T ss_pred             hhcc-cccccccccccccccceEEEEecchHHHHHcCceeec--ccchhhcccccCCCCCCCc--C----HHHHHHHHhh
Confidence            4332 1112222      12234443432 223332211000  0000000001112222222  3    6788888876


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----c------cccCCCcccc-cccCCCCC
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----F------ARTGSHFWGF-EAHGVVPD  318 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----f------gr~G~~~~~~-~~~gv~pD  318 (447)
                      .+++++..+.++-..+..|-.+.|.+.+++++++|++||+.+++|-+---    |      +.+|....-+ ...--.-|
T Consensus       179 ~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aD  258 (467)
T TIGR02617       179 VGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYAD  258 (467)
T ss_pred             cCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCC
Confidence            55566777766665555555666899999999999999999999965310    1      1222111000 00012357


Q ss_pred             EEE--eeccccCCccccccc-cCHH-HHHhhcC-------CcccccCCCChHHHHHHHH-HHHHHhhhhHHHHHHHHHHH
Q 013235          319 IVT--MAKGIGNGIPLGAVV-TTPE-IAEVLTR-------RNYFNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGSY  386 (447)
Q Consensus       319 ivt--~sK~lg~G~pigav~-~~~~-i~~~l~~-------~~~~~T~~~np~a~aaala-~L~~i~~~~l~~~~~~~g~~  386 (447)
                      .++  ++|++  |.|+|.++ ++++ +.+.+..       ...+.||+|=.---..|++ -|+..-+++++++--...+|
T Consensus       259 svt~slsKgl--gApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~y  336 (467)
T TIGR02617       259 MLAMSAKKDA--MVPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQY  336 (467)
T ss_pred             EEEEEcCCCC--CCcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHH
Confidence            775  55766  45776655 4443 2222222       1256788874322222232 35544455666555555677


Q ss_pred             HHHHHHHHHHhcCCeeeEeecce
Q 013235          387 LKERLTALKDKYGIIGDVRGRGF  409 (447)
Q Consensus       387 l~~~L~~l~~~~~~i~~vrg~Gl  409 (447)
                      |.++|.+.  .-|++. +-|.+.
T Consensus       337 l~~~L~~~--Gvpi~~-~Gghav  356 (467)
T TIGR02617       337 LVNGLEEI--GVVCQQ-AGGHAA  356 (467)
T ss_pred             HHHHHHhC--CCcEEe-cCccEE
Confidence            77777664  334444 444333

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=98.85  E-value=4.2e-07  Score=92.23  Aligned_cols=279  Identities=15%  Similarity=0.037  Sum_probs=150.6

Q ss_pred             CCHH-HHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC-CceEEEc-CCHHHHHHHHHHHHHhhcCCCeEEEEcC
Q 013235          116 CHPY-VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFT-NSGTEANELAIMMARLYTGCNDIISLRN  192 (447)
Q Consensus       116 ~~p~-v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~-~sGseA~e~Aik~ar~~t~~~~ii~~~~  192 (447)
                      .+|. |.+|+.+.+-...|.... ......+..++|++++..+ .++|+|+ .|||++++.++.-.  ..+++.+++. .
T Consensus        23 ~~~~~v~~a~~~~~~~~~hr~~~-f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l--~~~~~~~vi~-~   98 (378)
T PRK03080         23 KRPGWQLEALADALLGRSHRQKP-VKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL--LGARRVDHLA-W   98 (378)
T ss_pred             CChHHHHHHHHhhhcccCcCCHH-HHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc--CCCCcceEEE-e
Confidence            3577 888887654322243222 2456677888888888643 3356666 49999999999654  2222333333 4


Q ss_pred             CcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeC
Q 013235          193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (447)
Q Consensus       193 ~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~  272 (447)
                      +.||.........   .+..    ..+..+..+  +...  .|    ++++    +.     ...|.+-.+...+|.+.|
T Consensus        99 g~f~~~~~~~~~~---~~g~----~~v~~~~~~--~g~~--~d----~~~i----~~-----~~~V~~~h~~t~tG~~~p  154 (378)
T PRK03080         99 ESFGSKWATDVVK---QLKL----EDPRVLEAD--YGSL--PD----LSAV----DF-----DRDVVFTWNGTTTGVRVP  154 (378)
T ss_pred             CHHHHHHHHHHHh---hcCC----CCceEeccC--CCCC--CC----Hhhc----CC-----CCCEEEEecCCccceecc
Confidence            5666643221100   0000    012222221  1000  11    2222    21     122455556667788887


Q ss_pred             CCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc-
Q 013235          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-  349 (447)
Q Consensus       273 ~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~-  349 (447)
                          +++|.+  +++|+++|+|=+|+ +|-.   -+-++  +  .|++++|  |.|++-.-+|.+..+++..+.+.... 
T Consensus       155 ----i~~I~~--~~~g~~~vVDa~qs-~G~~---pidv~--~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~  220 (378)
T PRK03080        155 ----VARWIG--ADREGLTICDATSA-AFAL---PLDWS--K--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTP  220 (378)
T ss_pred             ----chhhcc--ccCCCeEEEecccc-cccC---CCCHH--H--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccC
Confidence                888888  78999999999996 4421   12222  2  4999877  98876444688999998887654310 


Q ss_pred             -----------c----------cccCCCChH-HHHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCee-
Q 013235          350 -----------Y----------FNTFGGNPV-CTAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIG-  402 (447)
Q Consensus       350 -----------~----------~~T~~~np~-a~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~-  402 (447)
                                 .          ..|++..++ +..+..++|+.+.+. +   ..++.+++.++++++|+++.. ..... 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~-~~~~~~  299 (378)
T PRK03080        221 ARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPW-ATPLVA  299 (378)
T ss_pred             CCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC-cccccC
Confidence                       0          113333333 334446788888764 3   345666666777776665420 11111 


Q ss_pred             --eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          403 --DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       403 --~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                        ..|+ +.++.+.+.+      +++....++...++++|++++
T Consensus       300 ~~~~~s-~~i~~~~~~~------~~~~~~~~~~~~l~~~~i~v~  336 (378)
T PRK03080        300 DPATRS-NTSVTLDFVD------AQAAVDAAAVAKLLRENGAVD  336 (378)
T ss_pred             CccccC-ccEEEEEcCC------chHHHHHHHHHHHHHcCCeec
Confidence              1122 2355555421      000112346677778888775

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=98.85  E-value=4.7e-07  Score=90.92  Aligned_cols=234  Identities=20%  Similarity=0.145  Sum_probs=142.9

Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      +..+|....|+++++++-+  .+..+.++||..|+..++.....  .++.|+..+..|.|....+..+-.         .
T Consensus        59 R~~nPT~~~lE~~~a~LEg--~~~~~afsSGmaAI~~~~l~ll~--~GD~vl~~~~~YG~t~~~~~~~l~---------~  125 (396)
T COG0626          59 RTGNPTRDALEEALAELEG--GEDAFAFSSGMAAISTALLALLK--AGDHVLLPDDLYGGTYRLFEKILQ---------K  125 (396)
T ss_pred             cCCCccHHHHHHHHHHhhC--CCcEEEecCcHHHHHHHHHHhcC--CCCEEEecCCccchHHHHHHHHHH---------h
Confidence            4458888999999998874  45678899999999998764332  468899988888665544432211         1


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+....+..       .+    .+.+++.+.   +.++.+|++|+.-++.--+..    +++|.++++++|+++|+|.+
T Consensus       126 ~gi~~~~~d~-------~~----~~~~~~~~~---~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNT  187 (396)
T COG0626         126 FGVEVTFVDP-------GD----DEALEAAIK---EPNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNT  187 (396)
T ss_pred             cCeEEEEECC-------CC----hHHHHHHhc---ccCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECC
Confidence            3444432211       11    223333333   237889999987777666665    99999999999999999998


Q ss_pred             ccCccccCCCcccccccCCCCCEEE--eeccccCC--ccccccccCH-HHHHhhcCCcccccCC--CChHHHHHHHHHHH
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNG--IPLGAVVTTP-EIAEVLTRRNYFNTFG--GNPVCTAAGHAVLK  369 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G--~pigav~~~~-~i~~~l~~~~~~~T~~--~np~a~aaala~L~  369 (447)
                      ...    +  . -++-+..-.|||+  ..|-++|.  .-.|+|+++. ++.+.+... ...+++  ..|..+-..+..|+
T Consensus       188 fat----P--~-~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~-~~~~~G~~l~p~dA~l~lRGlk  259 (396)
T COG0626         188 FAT----P--V-LQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA-QRANTGAVLSPFDAWLLLRGLR  259 (396)
T ss_pred             ccc----c--c-ccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH-HHhhcCCCCCHHHHHHHHhccc
Confidence            753    2  1 1233333369986  66999974  5667677555 444444111 111122  24666655555444


Q ss_pred             HHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE--e----------------ecceeEEEEEee
Q 013235          370 VIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGDV--R----------------GRGFLLGVEFVT  417 (447)
Q Consensus       370 ~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v--r----------------g~Gl~~giel~~  417 (447)
                      .+.  -+...+++.++.++|.        +++.+..|  +                |.|-|+.++|..
T Consensus       260 TL~~Rm~~~~~nA~~IA~~L~--------~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~  319 (396)
T COG0626         260 TLALRMERHNENALKIAEFLA--------DHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN  319 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh--------cCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence            432  1223344444444432        24444433  2                588999999954

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=98.84  E-value=8.6e-08  Score=95.28  Aligned_cols=214  Identities=18%  Similarity=0.108  Sum_probs=137.4

Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      ..+|....+...+++...  .+.++.++||..|+..|+....  ....+||++...|.|..........         ..
T Consensus        74 ~~nPt~~~le~~iaal~g--a~~~l~fsSGmaA~~~al~~L~--~~g~~iV~~~~~Y~gT~~~l~~~~~---------~~  140 (409)
T KOG0053|consen   74 SGNPTRDVLESGIAALEG--AAHALLFSSGMAAITVALLHLL--PAGDHIVATGDVYGGTLRILRKFLP---------KF  140 (409)
T ss_pred             CCCCchHHHHHHHHHHhC--CceEEEecccHHHHHHHHHHhc--CCCCcEEEeCCCcccHHHHHHHHHH---------Hh
Confidence            346666778888888763  4568899999999999998655  3678899999999765543322110         12


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~  297 (447)
                      |+..-.          .|... .+++++.++   + ++-+|++|..-++...++.    +++|.++|+++|+++|+|+..
T Consensus       141 gie~~~----------vd~~~-~~~~~~~i~---~-~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf  201 (409)
T KOG0053|consen  141 GGEGDF----------VDVDD-LKKILKAIK---E-NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTF  201 (409)
T ss_pred             Cceeee----------echhh-HHHHHHhhc---c-CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCc
Confidence            222211          11110 344555544   2 7889999998888777776    999999999999999999987


Q ss_pred             cCccccCCCcccccccCCCCCEEE--eeccccCC--ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHH-
Q 013235          298 AGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNG--IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-  371 (447)
Q Consensus       298 tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G--~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i-  371 (447)
                      .+..       -.+-+..-.|||+  ..|-|+|.  +-.|.++.+ +++...+......--+.-||+.|...+.-|+.+ 
T Consensus       202 ~~p~-------~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl~  274 (409)
T KOG0053|consen  202 GSPY-------NQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTLH  274 (409)
T ss_pred             Cccc-------ccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchhh
Confidence            6432       1233334479996  66999974  566777775 777766654332234556788877766555432 


Q ss_pred             -hhhhHHHHHHHHHHHHHHH
Q 013235          372 -QKDKLQNNAHVVGSYLKER  390 (447)
Q Consensus       372 -~~~~l~~~~~~~g~~l~~~  390 (447)
                       +-+.-.+++..+.++|.+.
T Consensus       275 lRi~~~~ena~~~A~~Le~~  294 (409)
T KOG0053|consen  275 LRINKHSENALKIALLLEAH  294 (409)
T ss_pred             hhHHHHHHHHHHHHHHhhhC
Confidence             1122334444455554443

>PLN02724 Molybdenum cofactor sulfurase

Probab=98.84  E-value=1.6e-06  Score=96.25  Aligned_cols=319  Identities=13%  Similarity=0.082  Sum_probs=171.5

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHH-HHHHhc---cccc---ccccchHHHHHHHHHHHhCCCCCc--eEEEcCCHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIV-NQIKRI---QHST---VLYLNHAIADFAEALASKMPGNLK--VVFFTNSGTE  169 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~-~~l~~~---~~~~---~~~~~~~~~elae~L~~~~~~~~~--~v~~~~sGse  169 (447)
                      ..|||..+.-.      ..|.+++++. +.+...   .|..   .......+.+.+++++++++.+.+  .|+|+++.|+
T Consensus        35 ~iYLD~Aatt~------~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~  108 (805)
T PLN02724         35 VVYLDHAGATL------YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA  108 (805)
T ss_pred             CEeEeCCCCCC------CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence            58999764322      2344544443 443332   1211   111244567888999999876443  5899999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCC--ChHHHHHHHHHHH
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGA--DGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~--d~~~~~~~le~~i  247 (447)
                      |+..+..... ...++.||+ ...-|........+....       ...+..++.+.....+.+.  +.+...++|++.+
T Consensus       109 alnlva~~l~-~~~gd~Iv~-t~~eH~svl~~~~~a~~~-------G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~  179 (805)
T PLN02724        109 ALKLVGETFP-WSSESHFCY-TLENHNSVLGIREYALEK-------GAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRN  179 (805)
T ss_pred             HHHHHHHHCC-CCCCCeEEE-eeccccchHHHHHHHHHc-------CCeEEeccchhccccccccccccccchhhhhhhh
Confidence            9998876432 334556665 455554443322111000       0112233221100000000  0000013344432


Q ss_pred             ----Hcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh--------CCEEEEeccccCccccCCCccccccc
Q 013235          248 ----DFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--------GGLCIADEVQAGFARTGSHFWGFEAH  313 (447)
Q Consensus       248 ----~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~--------g~llI~DEv~tGfgr~G~~~~~~~~~  313 (447)
                          ...  ..+++..|.+.-+.+..|.+.|    ++.+..+++..        ++++++|-+|+ +|..     -++..
T Consensus       180 ~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~-----piDv~  249 (805)
T PLN02724        180 TSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS-----PPDLS  249 (805)
T ss_pred             hhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC-----CCChh
Confidence                111  1234567888888899999998    77665544432        36899999996 4321     13333


Q ss_pred             CCCCCEEEee--ccccCCccccccccCHHHHHhhcCCccc-cc---------C--------------CCChHHHHHHHHH
Q 013235          314 GVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNYF-NT---------F--------------GGNPVCTAAGHAV  367 (447)
Q Consensus       314 gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~~~-~T---------~--------------~~np~a~aaala~  367 (447)
                      .+.+|.+++|  |-+|+-.-+|+++.+++..+.+.+...+ .|         |              .-|..+.++..++
T Consensus       250 ~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aa  329 (805)
T PLN02724        250 RYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHG  329 (805)
T ss_pred             hcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHH
Confidence            4568999987  8665323478899999887766542111 01         1              1345566666677


Q ss_pred             HHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhc--CCe---ee------EeecceeEEEEEeeCCCCCCCCHHHHHHHH
Q 013235          368 LKVIQK---DKLQNNAHVVGSYLKERLTALKDKY--GII---GD------VRGRGFLLGVEFVTDRQLKTPAKAETLYIM  433 (447)
Q Consensus       368 L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~--~~i---~~------vrg~Gl~~giel~~~~~~~~p~~~~~~~~~  433 (447)
                      |+.+++   +...++.+.+.++|.++|.++....  +.+   +.      ...++-++.+.+........+    ...+.
T Consensus       330 l~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~----~~~v~  405 (805)
T PLN02724        330 FKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVG----HREVE  405 (805)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeC----HHHHH
Confidence            777765   4567888889999999888873111  111   11      112556777777543221111    12233


Q ss_pred             HHHHhCCceeecc
Q 013235          434 DKMKGICALFFSQ  446 (447)
Q Consensus       434 ~~l~~~Gvlv~~~  446 (447)
                      ..+-++||.++.+
T Consensus       406 ~l~~~~gI~vR~G  418 (805)
T PLN02724        406 KLASLSGIQLRTG  418 (805)
T ss_pred             HHHHhcCcEEeec
Confidence            3334579988764

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.84  E-value=6.7e-07  Score=99.74  Aligned_cols=268  Identities=14%  Similarity=0.193  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc---C--CCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---G--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t---~--~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      ....++.+.|+++++-+ ...+..|+|++++.+++..+|.|.   |  +++++....+-||....+....+.        
T Consensus       542 ~~i~e~q~~l~eltG~d-~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~--------  612 (954)
T PRK05367        542 ELIDQLEAWLAEITGYD-AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGM--------  612 (954)
T ss_pred             HHHHHHHHHHHHHHCCC-CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCC--------
Confidence            34567888888887432 334446688888888887777652   1  234555667778777665443221        


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                        .+..++..  ..+  ..|    .++|++.++.. ++++++|++.-....|+...+    +++|.++|+++|+++++|.
T Consensus       613 --~vv~v~~d--~~G--~iD----~~~L~~~i~~~-~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDg  677 (954)
T PRK05367        613 --KVVVVACD--ENG--NID----LDDLRAKAEEH-ADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDG  677 (954)
T ss_pred             --EEEEECCC--CCC--CcC----HHHHHHHHhcc-CCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEEC
Confidence              22333321  111  123    67787777643 235666655432222333344    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEEee--cccc----C-CccccccccCHHHHHhhcCCccc--------ccCCCChHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG----N-GIPLGAVVTTPEIAEVLTRRNYF--------NTFGGNPVC  360 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg----~-G~pigav~~~~~i~~~l~~~~~~--------~T~~~np~a  360 (447)
                      ++.+ +-.+  +-....  .-.|+++++  |.++    + |--+|.+.+++.+...+......        ++....+.+
T Consensus       678 A~~~-al~~--l~~pg~--~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g  752 (954)
T PRK05367        678 ANMN-AQVG--LARPGD--IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFG  752 (954)
T ss_pred             cChh-hccC--CCChhh--cCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHH
Confidence            9952 1111  100112  235999876  8875    2 34467777777766655442210        111111221


Q ss_pred             ----HHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHhcCCeeeEe----ecceeEEEEEeeCCCCCCCCHHHH
Q 013235          361 ----TAAGHAVLKVIQKDKLQNNAH---VVGSYLKERLTALKDKYGIIGDVR----GRGFLLGVEFVTDRQLKTPAKAET  429 (447)
Q Consensus       361 ----~aaala~L~~i~~~~l~~~~~---~~g~~l~~~L~~l~~~~~~i~~vr----g~Gl~~giel~~~~~~~~p~~~~~  429 (447)
                          ...+...|..+=.+++.+.++   .+.+|+.++|++.   +++...-.    -...++  .+..-+   ......+
T Consensus       753 ~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~~~~~~~~~~~~~e~i~--~~~~~~---~~~g~~~  824 (954)
T PRK05367        753 SASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH---YPVLYTGANGRVAHECIL--DLRPLK---ESTGITV  824 (954)
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cCccccCCCCCcccceEE--Eeeccc---ccCCCCH
Confidence                111223344444456665555   7888999988764   22211100    001111  111000   0001124


Q ss_pred             HHHHHHHHhCCceeec
Q 013235          430 LYIMDKMKGICALFFS  445 (447)
Q Consensus       430 ~~~~~~l~~~Gvlv~~  445 (447)
                      ..+.+.|.+.|+....
T Consensus       825 ~di~krL~d~G~~~~t  840 (954)
T PRK05367        825 DDIAKRLIDYGFHAPT  840 (954)
T ss_pred             HHHHHHHHHCCCeEee
Confidence            6799999999998754

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=98.79  E-value=9.5e-07  Score=88.61  Aligned_cols=278  Identities=10%  Similarity=0.036  Sum_probs=148.5

Q ss_pred             CHHHHHHHHHHHHhccccc------cccc---chHHHHHHHHHHHhCCC--CCceEEEcCCHHHHHHHHHHHHHhhcCCC
Q 013235          117 HPYVVDSIVNQIKRIQHST------VLYL---NHAIADFAEALASKMPG--NLKVVFFTNSGTEANELAIMMARLYTGCN  185 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~------~~~~---~~~~~elae~L~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~t~~~  185 (447)
                      +..|++|+.+.+.......      ....   .....+..++|.+++..  +.+.+++.+|||+|+|+++.-...  +.+
T Consensus         4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~--~~~   81 (349)
T TIGR01364         4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA--EGK   81 (349)
T ss_pred             CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC--CCC
Confidence            4578888888776432110      0011   14556777888888763  234455557799999999974432  456


Q ss_pred             eEEEEcCCcccCchhhhhccCCCCccccccCCCe-EeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc
Q 013235          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (447)
Q Consensus       186 ~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~  264 (447)
                      +++++..+..|....-++-.           .|. ..+..+  ...+|+..     .+++++...  + ++.+|.+--+-
T Consensus        82 ~~l~i~~G~fg~r~~~~a~~-----------~g~~~~~~~~--~~~~~~~~-----~~~~~~~~~--~-~~~~v~~th~E  140 (349)
T TIGR01364        82 VADYIVTGAWSKKAAKEAKK-----------YGVVNVVASG--KEGNYTKI-----PDPSTWEIS--E-DAAYVHYCANE  140 (349)
T ss_pred             eEEEEECCHHHHHHHHHHHH-----------hCCcEEEecc--ccCCCCCC-----CCHHhcCCC--C-CCCEEEEcCCC
Confidence            77777777766655333211           121 222211  11223221     122221111  2 34444444444


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCcc-ccccccCHHH
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIP-LGAVVTTPEI  341 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~p-igav~~~~~i  341 (447)
                      .++|+..+         ++++.+|+++|+|=||+ +|-   .-.-.+.+    |++++|  |.+|  .| +|.+..+++.
T Consensus       141 TstGv~~~---------~l~~~~~~l~iVDavss-~g~---~~id~~~~----d~~~~ssqK~lg--P~Glg~l~~s~~~  201 (349)
T TIGR01364       141 TIHGVEFR---------ELPDVKNAPLVADMSSN-ILS---RPIDVSKF----GLIYAGAQKNIG--PAGLTVVIVRKDL  201 (349)
T ss_pred             CcccEecc---------eecccCCCeEEEEcccc-ccC---ccCCHHHc----cEEEEecccccC--CCceEEEEECHHH
Confidence            55666542         66777899999999997 431   11122322    577766  9885  33 7889999998


Q ss_pred             HHhhcCCc-----------ccccCCCChHHHH-HHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCee--e
Q 013235          342 AEVLTRRN-----------YFNTFGGNPVCTA-AGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIG--D  403 (447)
Q Consensus       342 ~~~l~~~~-----------~~~T~~~np~a~a-aala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~--~  403 (447)
                      .+.+.+..           ...+++..++... +..++|+.+.++ +   +.++.+++.++++++|+++-.-+....  .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~  281 (349)
T TIGR01364       202 LGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPR  281 (349)
T ss_pred             HhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHH
Confidence            87654321           0123334344444 445689988765 3   345555666666666666521000101  1


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|. ...+.+.+.+        .....++.+.+.++|+.+..
T Consensus       282 ~rs-~~v~sf~~~~--------~~~~~~~~~~~~~~Gi~~~~  314 (349)
T TIGR01364       282 NRS-RMNVVFTLGN--------EELEKRFLKEAEERGLVSLK  314 (349)
T ss_pred             HcC-CeEEEEecCC--------hhHhHHHHHHHHHCCCcccC
Confidence            121 2344554421        11235676788899985543

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=98.78  E-value=7.7e-07  Score=84.02  Aligned_cols=275  Identities=16%  Similarity=0.115  Sum_probs=144.5

Q ss_pred             chHHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhh--cCC-Ce-EEEEcCCcccCchhhhhccCCCCcccc
Q 013235          140 NHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY--TGC-ND-IISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~--t~~-~~-ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      ...+..|+..|.+.+..+  .+++.++|+...|--.+..+.--+  .|. ++ ++-+.+-|-|+....+---.--.++  
T Consensus        77 ~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~k--  154 (417)
T COG3977          77 AVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAK--  154 (417)
T ss_pred             hHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeecc--
Confidence            455667777777777544  468889998887777766543221  122 23 3445777877765443210000011  


Q ss_pred             ccCCCeEeecC-CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          214 VVQTGVHHALN-PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       214 ~~~~g~~~~~~-p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                         +.+...+. -..|+    -|    .++|+      ..+.+.+|++.---+++|.+. +++.+.+|..++++||+++|
T Consensus       155 ---P~iel~~~g~FKY~----vD----F~~l~------i~e~~g~ic~SRPtNPTGNVl-TdeE~~kldalA~~~giPli  216 (417)
T COG3977         155 ---PNIELLPAGQFKYH----VD----FEHLH------IGESTGAICVSRPTNPTGNVL-TDEELAKLDALARQHGIPLI  216 (417)
T ss_pred             ---CCcccccccceeec----cC----HHHcc------cccccceEEecCCCCCCCCcc-cHHHHHHHHHHhhhcCCcEE
Confidence               11111110 00111    12    22222      134788888886556666665 78889999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEE-Ee--eccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV-TM--AKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDiv-t~--sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      +|.+| |.-.-| -.|.--..-..++|+ ||  ||.==.|.++|.++++++++..+.+....-+  ..|-.+..|+++ +
T Consensus       217 IDnAY-g~PFP~-iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~iis--Lap~~~G~Aia~-~  291 (417)
T COG3977         217 IDNAY-GVPFPG-IIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGIIS--LAPGRMGPAIAA-E  291 (417)
T ss_pred             Eeccc-CCCCCc-eecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccceee--ecCCCccHHHHH-H
Confidence            99998 443333 122111111235655 44  4532258899999999999998875321111  111111122221 3


Q ss_pred             HHhhhhHHHHHHHHHHHH-HHH----HHHHHHhcC--CeeeEeecce-eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          370 VIQKDKLQNNAHVVGSYL-KER----LTALKDKYG--IIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l-~~~----L~~l~~~~~--~i~~vrg~Gl-~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +|++.++.+-.+++.+=| +++    ..-+.+..+  ...--++.|. |.++=|.+-     |  ....++.+.|+.+||
T Consensus       292 mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dL-----P--Itt~~LYq~LKa~Gv  364 (417)
T COG3977         292 MIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDL-----P--ITTEELYQRLKARGV  364 (417)
T ss_pred             HhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccC-----C--CCHHHHHHHHHhCeE
Confidence            344444444333332211 111    111211122  1222355664 444444332     2  225789999999999


Q ss_pred             eeecc
Q 013235          442 LFFSQ  446 (447)
Q Consensus       442 lv~~~  446 (447)
                      ++-++
T Consensus       365 l~VPG  369 (417)
T COG3977         365 LMVPG  369 (417)
T ss_pred             EEecc
Confidence            98653

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=98.71  E-value=1.7e-06  Score=87.18  Aligned_cols=275  Identities=12%  Similarity=0.069  Sum_probs=153.3

Q ss_pred             CCHHHHHHHHHHHHhc----------ccccccccchHHHHHHHHHHHhCCC--CCceEEEcCCHHHHHHHHHHHHHhhcC
Q 013235          116 CHPYVVDSIVNQIKRI----------QHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANELAIMMARLYTG  183 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~----------~~~~~~~~~~~~~elae~L~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~t~  183 (447)
                      .+++|.+|+.+.+...          .|....| .....+..++|++++..  +.+.+++.+||+.|+|+++.-...  .
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f-~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~--~   90 (360)
T PRK05355         14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEF-EAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG--G   90 (360)
T ss_pred             CCHHHHHHHHHHhhccccCCccccccCCCCHHH-HHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC--C
Confidence            4789999999887432          2211111 35667888888888864  234667779999999999864332  4


Q ss_pred             CCeEEEEcCCcccCchhhhhccCCCCccccccCCCe-EeecCCCCcCCCCCC-ChHHHHHHHHH-HHHccCCCCeEEEEE
Q 013235          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV-HHALNPDPYRGVFGA-DGEMYAKDVQD-LIDFGTSGHVAGFLS  260 (447)
Q Consensus       184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~-d~~~~~~~le~-~i~~~~~~~~aavi~  260 (447)
                      ++++.+...+..|....-+.-.           .|. ..+..+..    ++. +    ..++++ .+..    ++.+|.+
T Consensus        91 g~~~l~i~~G~fg~r~~~~a~~-----------~g~~~~~~~~~~----~g~~~----~~~~~~~~l~~----~~~~V~~  147 (360)
T PRK05355         91 GKKADYVDTGSWSKKAIKEAKK-----------YGEVNVAASSED----DGFTY----IPPLDEWQLSD----DAAYVHY  147 (360)
T ss_pred             CCeEEEEECCHHHHHHHHHHHH-----------hCCceEEecccc----cCCCC----CCChhhccCCC----CCCEEEE
Confidence            4666666666666554322211           011 11111110    111 1    112222 3322    3445555


Q ss_pred             ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccC
Q 013235          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT  338 (447)
Q Consensus       261 Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~  338 (447)
                      --+-.++|+..++   +++|      +|+++|+|=||+ +|-   .-.-.+.+    |++++|  |.+| -.-+|.+..+
T Consensus       148 th~eTstGv~~~~---i~~i------~g~l~vVDavss-~g~---~~idv~~~----d~~~~ssqK~lg-P~Glg~l~~s  209 (360)
T PRK05355        148 TSNETIDGTEFHE---LPDT------GDVPLVADMSSD-ILS---RPIDVSKF----GLIYAGAQKNIG-PAGLTIVIVR  209 (360)
T ss_pred             ccCCCcceEecCc---cccc------CCCcEEEEcCcc-ccC---ccCCHHHc----cEEEEecccccc-CCceEEEEEC
Confidence            5555667777532   4444      899999999997 431   12222322    577776  9885 2227889999


Q ss_pred             HHHHHhhcCC-c----------ccccCCCChHH-HHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          339 PEIAEVLTRR-N----------YFNTFGGNPVC-TAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       339 ~~i~~~l~~~-~----------~~~T~~~np~a-~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      ++..+.+.+. .          ...+++..++. ..+..++|+.+.++ +   ..++.+++.++++++|+++- -+....
T Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~-~~~~~~  288 (360)
T PRK05355        210 EDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD-FYRNPV  288 (360)
T ss_pred             HHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC-CcccCC
Confidence            9988776541 1          11233443444 44455789988766 3   45566666677777766652 111111


Q ss_pred             e--EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          403 D--VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       403 ~--vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +  .|. +..+.+.+        |......++.+.+.++|+.+.
T Consensus       289 ~~~~rs-~~v~sf~~--------~~~~~~~~~~~~~~~~Gi~~~  323 (360)
T PRK05355        289 APEDRS-RMNVPFTL--------ADEELDKKFLAEAKAAGLVGL  323 (360)
T ss_pred             ChhhcC-CcEEEEEc--------CChHHHHHHHHHHHHCCCccc
Confidence            1  221 23445544        222233567778889999874

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=98.70  E-value=1.5e-06  Score=87.68  Aligned_cols=275  Identities=11%  Similarity=0.049  Sum_probs=152.4

Q ss_pred             CHHHHHHHHHHHHh---cccccccccchHHHHHHHHHHHhCCCC-CceEEE-cCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          117 HPYVVDSIVNQIKR---IQHSTVLYLNHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       117 ~p~v~~A~~~~l~~---~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~-~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      +|+|.+|+.++...   ..|-+..+ ...+.+..++|++++... ..+|+| .+|||.+++.++.-..  .+  +.+.+.
T Consensus        15 ~~~v~~a~~~~~~~~~~~~hr~~~f-~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--~~--~~l~i~   89 (361)
T TIGR01366        15 RLEQLQALTTTAASLFGTSHRQAPV-KNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--EK--KSLHLS   89 (361)
T ss_pred             CHHHHHHHHhcCccccccCcCChHH-HHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--cc--cccEEe
Confidence            68899987754211   12433222 456677888888888653 235666 5889999999996432  12  333344


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      .+.||....-.+...  .|.     ..+..++.+      ++.+       ++..+    ..++..|.+-..-+.+|++.
T Consensus        90 ~G~~~~~~~~~a~~~--~~~-----~~~~~~~~~------~~~~-------~~~~~----~~~~~lV~~~h~et~tG~~~  145 (361)
T TIGR01366        90 FGEFSSKFAKAVKLA--PWL-----GEPIIVTAD------PGSA-------PEPQA----DPGVDVIAWAHNETSTGVAV  145 (361)
T ss_pred             cCHHHHHHHHHHHhh--hcc-----CCceEEecC------CCCC-------CCCcc----CCCCCEEEEcccCCccceec
Confidence            455554444333221  000     012233222      1111       11111    13667777777778888888


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccC--CccccccccCHHHHHhhcC
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN--GIPLGAVVTTPEIAEVLTR  347 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~--G~pigav~~~~~i~~~l~~  347 (447)
                      |    +++|   ++++|+++|+|=+|+ +|-   ...-++  .  .|++++|  |.+++  |  ++.++.++++.+.+..
T Consensus       146 p----i~~I---~~~~g~~~iVDavqs-~g~---~~idv~--~--~D~~~~s~~K~lg~~~G--l~~~~~s~~~~~~~~~  208 (361)
T TIGR01366       146 P----VRRP---EGSDDALVVIDATSG-AGG---LPVDIA--E--TDVYYFAPQKNFASDGG--LWLAIMSPAALERIEA  208 (361)
T ss_pred             c----cccc---cccCCCeEEEEcCcc-ccC---CCCCHH--H--CCEEEEEchhhcCCCCc--eEEEEECHHHHhhhhc
Confidence            7    5444   689999999999997 431   121222  1  5999887  98873  3  4556678877765542


Q ss_pred             Cc--------c------------cccCCCChHHHH-HHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          348 RN--------Y------------FNTFGGNPVCTA-AGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       348 ~~--------~------------~~T~~~np~a~a-aala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      ..        +            ..|++..++... +..++|+.++++ +   ..++.+++.++++++|.++..-...+.
T Consensus       209 ~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~  288 (361)
T TIGR01366       209 IAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVT  288 (361)
T ss_pred             ccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence            10        0            134444455544 555778888755 2   346666777777777777631101111


Q ss_pred             e--EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          403 D--VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       403 ~--vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .  .+. .....+.|. +.       .....+.+.|.++||.+...
T Consensus       289 ~~~~~s-~~v~~v~~~-~g-------~~~~~v~~~L~~~gI~i~~~  325 (361)
T TIGR01366       289 DPGKRS-QVVGTIDFV-DD-------IDAATVAKILRANGIVDTEP  325 (361)
T ss_pred             Chhhcc-cceEEEECC-Cc-------cCHHHHHHHHHHCCCeeccC
Confidence            1  111 111233442 11       11356888888899987543

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=98.66  E-value=9.8e-07  Score=86.03  Aligned_cols=270  Identities=16%  Similarity=0.124  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHhccccccccc-----chHHHHHHHHHHHh--CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEE
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASK--MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL  190 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~-----~~~~~elae~L~~~--~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~  190 (447)
                      ..+++.+..-++..+-+...|.     .-.+...|+-+.++  .|.+.+.||++.+.|.|+...|++.-.. .++.|++.
T Consensus        89 ~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~-~~~GvliP  167 (475)
T KOG0258|consen   89 TDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG-KKTGVLIP  167 (475)
T ss_pred             HHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC-CCCceEee
Confidence            3455555555554432222333     33445566666655  3556788999999999999999977543 66788888


Q ss_pred             cCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (447)
Q Consensus       191 ~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~  270 (447)
                      -+-|.=++... ++-            |...+++=......|+.|.+++...+++..+.+  +-.+.+|++|-+..|  .
T Consensus       168 iPQYPLYsAti-~l~------------~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i--~~r~lvvINPGNPTG--q  230 (475)
T KOG0258|consen  168 IPQYPLYSATI-SLL------------GGTQVPYYLDEESNWSLDVAELERSVDEARKGI--NPRALVVINPGNPTG--Q  230 (475)
T ss_pred             cCCCchhHHHH-HHh------------CCcccceeeccccCCCCCHHHHHHHHHHHhccC--CceEEEEECCCCccc--h
Confidence            88886544322 221            222333322345568778544444444444323  245788999987665  3


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEeccccC-ccccCCCcccccc----cC-CCCCEE------EeeccccC--Cccccccc
Q 013235          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEA----HG-VVPDIV------TMAKGIGN--GIPLGAVV  336 (447)
Q Consensus       271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tG-fgr~G~~~~~~~~----~g-v~pDiv------t~sK~lg~--G~pigav~  336 (447)
                      +.+++-+++|.++|.++|++|+.||||.. ..-.|++|+++..    .| -.||-+      ..||++.+  |.+-|+.-
T Consensus       231 vls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmE  310 (475)
T KOG0258|consen  231 VLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYME  310 (475)
T ss_pred             hhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeee
Confidence            44788899999999999999999999775 3345557777742    22 345433      46799874  66666643


Q ss_pred             c---CHHHHHhhcCC---ccc--------------ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013235          337 T---TPEIAEVLTRR---NYF--------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       337 ~---~~~i~~~l~~~---~~~--------------~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      .   .+++.+.+.+.   ...              ...-|.+-      -.+..-+++...+.++...+.+.+.++.+  
T Consensus       311 v~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~S------y~~~~~Ekd~il~~l~~ra~l~~~~~ns~--  382 (475)
T KOG0258|consen  311 SLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPS------YDLFSSEKDGILSSLRSRAKLTEDAFNSL--  382 (475)
T ss_pred             cccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcc------hhhhhhhhHhHHHHHHHHhHHHHHHHhhc--
Confidence            2   34444433221   011              11112110      01121234556677777777777766665  


Q ss_pred             hcCCeeeEeecceeEEEEE
Q 013235          397 KYGIIGDVRGRGFLLGVEF  415 (447)
Q Consensus       397 ~~~~i~~vrg~Gl~~giel  415 (447)
                        +.+.+-+-.|.|..+.=
T Consensus       383 --~gi~cn~~qGAMY~fP~  399 (475)
T KOG0258|consen  383 --EGISCNPVQGAMYLFPQ  399 (475)
T ss_pred             --CceeeccCccceeeccc
Confidence              56777788898887654

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.64  E-value=8.2e-06  Score=85.81  Aligned_cols=214  Identities=16%  Similarity=0.122  Sum_probs=121.0

Q ss_pred             EEEcCCHHHHHHHHHHHHHhhcC-----------------------CCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          161 VFFTNSGTEANELAIMMARLYTG-----------------------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~t~-----------------------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      -.|+++||+||..|+..||...-                       ++.+|+....-|-+...+....+.       ...
T Consensus       162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lgl-------g~~  234 (522)
T TIGR03799       162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGI-------GRD  234 (522)
T ss_pred             eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCC-------Ccc
Confidence            46899999999999999987421                       122444444555444333222211       011


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      .+..++.....    .-|    .++|++.|++.  ...++.+|+......+.|.+.|    +++|.++|+++|+.+.+|-
T Consensus       235 ~v~~vp~d~~g----~~d----~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDa  302 (522)
T TIGR03799       235 NLIAIKTDANN----RID----VDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDA  302 (522)
T ss_pred             cEEEEEeCCCC----cCC----HHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEc
Confidence            24444432211    134    45666666421  1124555555444456788888    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccC-HHHHHhhcCC-cc----------cccCCCC-hH
Q 013235          296 VQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRR-NY----------FNTFGGN-PV  359 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~-~~i~~~l~~~-~~----------~~T~~~n-p~  359 (447)
                      +|.|....-.++ -....|+ ..|.++++  |-+.+-+..|+++.+ ++..+.+... .+          ..++.+. +.
T Consensus       303 A~gg~~~~~~~~-r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~  381 (522)
T TIGR03799       303 AWGGATLLSNTY-RHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPG  381 (522)
T ss_pred             hhhhHHHhCHHH-HHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcch
Confidence            997642111000 0002344 67999987  877666777888775 4555544331 01          0123332 22


Q ss_pred             HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 013235          360 CTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       360 a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l  394 (447)
                      ......++|+.+..++   +.++..++.++|.+.|++.
T Consensus       382 ~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~  419 (522)
T TIGR03799       382 MAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ  419 (522)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            2223456677765544   4566666677777666553

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PLN02880 tyrosine decarboxylase

Probab=98.60  E-value=6e-06  Score=86.43  Aligned_cols=280  Identities=11%  Similarity=0.037  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHhCCCCC-------ceEEEcCCHHHHHHHHHHHHHhhc-------C-CCeEEEEcCCcccCchhhhhccC
Q 013235          142 AIADFAEALASKMPGNL-------KVVFFTNSGTEANELAIMMARLYT-------G-CNDIISLRNAYHGNAAGTMGATA  206 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~-------~~v~~~~sGseA~e~Aik~ar~~t-------~-~~~ii~~~~~yHG~~~~~~~~t~  206 (447)
                      ...++.+.|++++.-+.       .--+|++||||||..|+..||...       + ++-++.....-|-+..-+..+.+
T Consensus       123 lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lG  202 (490)
T PLN02880        123 LEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAG  202 (490)
T ss_pred             HHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcC
Confidence            33455566666663221       125689999999999999998642       1 22344445555766666655543


Q ss_pred             CCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHH
Q 013235          207 QSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI  284 (447)
Q Consensus       207 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~  284 (447)
                      ..       ...+..++....  +.+.-|    .++|++.|++.  ....+.+|+..--....|.+-|    +++|.++|
T Consensus       203 lg-------~~~v~~Vp~d~~--~~~~md----~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~  265 (490)
T PLN02880        203 IH-------PENCRLLKTDSS--TNYALA----PELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIA  265 (490)
T ss_pred             CC-------HHHEEEeecCCC--cCCcCC----HHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHH
Confidence            21       112444554311  111234    45666666431  1235667776655555677777    99999999


Q ss_pred             HHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCHH--HHHhhcCCc-cc-------
Q 013235          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE--IAEVLTRRN-YF-------  351 (447)
Q Consensus       285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~~--i~~~l~~~~-~~-------  351 (447)
                      ++||+.+.+|-++.|+-..- ..+-....|+ ..|-+++.  |-+...++.|+++.+..  ..+.+.... +.       
T Consensus       266 ~~~~iwlHVDaA~gg~~~~~-~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~  344 (490)
T PLN02880        266 KSNGMWFHVDAAYAGSACIC-PEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQA  344 (490)
T ss_pred             HHcCCEEEEehhhHHHHHhC-HHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccc
Confidence            99999999999987753221 1111112354 57888754  88876778888887632  222222110 00       


Q ss_pred             -ccC--------CCChHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCC
Q 013235          352 -NTF--------GGNPVCTAAGHAVLKVIQKDKLQNNAH---VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR  419 (447)
Q Consensus       352 -~T~--------~~np~a~aaala~L~~i~~~~l~~~~~---~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~  419 (447)
                       .++        .+-.......-.+|+.+=.+++.++++   ++.+++.+.|++.. ++.++..  ..-.++.+.+....
T Consensus       345 ~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~-~~el~~~--~~~~iv~Fr~~~~~  421 (490)
T PLN02880        345 NSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDS-RFEVVTP--RIFSLVCFRLVPPK  421 (490)
T ss_pred             cCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEecC--CceEEEEEEEeCCC
Confidence             000        111111222223466555667777777   77788777665532 2222222  12334455554221


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCce
Q 013235          420 QLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       420 ~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                      ...........++.++|.+.|-+
T Consensus       422 ~~~~~~~~~n~~l~~~l~~~g~~  444 (490)
T PLN02880        422 NNEDNGNKLNHDLLDAVNSSGKI  444 (490)
T ss_pred             CChhhHHHHHHHHHHHHHhCCCE
Confidence            11000122335677777776643

>PLN02263 serine decarboxylase

Probab=98.52  E-value=4.9e-05  Score=78.32  Aligned_cols=225  Identities=19%  Similarity=0.103  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHhCCCCCc--eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe
Q 013235          142 AIADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~--~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~  219 (447)
                      ...++.+.+++++..+.+  .-+++++|||||..||..||.+.. +.+++....-|-+..-+..+-+.          .+
T Consensus       134 ~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~-~~vvy~S~~aH~Sv~KAa~llgi----------~~  202 (470)
T PLN02263        134 FEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFP-DGILYASRESHYSVFKAARMYRM----------EC  202 (470)
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcC-CcEEEEcCCccHHHHHHHHhcCC----------cc
Confidence            334566667777654321  357899999999999999998643 34666666667666555544332          23


Q ss_pred             EeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC-----EEEEe
Q 013235          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG-----LCIAD  294 (447)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~-----llI~D  294 (447)
                      ..++....    +.-|    .++|++.|.+.. .++.+|++.--.-+.|.+-|    +++|.++|+++|+     .|-+|
T Consensus       203 ~~Vp~d~~----g~mD----~~aL~~aI~~d~-~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVD  269 (470)
T PLN02263        203 VKVDTLVS----GEID----CADFKAKLLANK-DKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCD  269 (470)
T ss_pred             eEeccCCC----CcCc----HHHHHHHHHhCC-CCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEe
Confidence            33443211    1134    677877776432 34666666543334577766    9999999999997     99999


Q ss_pred             ccccCccc----cCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc-c----cccCCCC-h-HHH
Q 013235          295 EVQAGFAR----TGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-Y----FNTFGGN-P-VCT  361 (447)
Q Consensus       295 Ev~tGfgr----~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~-~----~~T~~~n-p-~a~  361 (447)
                      -++.|+--    .- ..|.+.   ...|=+++.  |-++.-++.|.++.+++..+.+.... +    -.|..|. + ...
T Consensus       270 AA~GG~~lPf~~~~-~~~df~---~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~a  345 (470)
T PLN02263        270 GALFGLMMPFVKRA-PKVTFK---KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP  345 (470)
T ss_pred             ccchhhHhhhcccc-cccCCC---cCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHH
Confidence            99988522    11 111111   125666655  77777788899999877655553321 1    1233332 1 223


Q ss_pred             HHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHH
Q 013235          362 AAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTAL  394 (447)
Q Consensus       362 aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l  394 (447)
                      +..-.+|+.+-.+++.   ++..++.+++.++|++.
T Consensus       346 l~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~  381 (470)
T PLN02263        346 IFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA  381 (470)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3444556655455544   55556677888877765

>PLN02271 serine hydroxymethyltransferase

Probab=98.47  E-value=0.00011  Score=76.62  Aligned_cols=213  Identities=13%  Similarity=-0.014  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHH
Q 013235          165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (447)
Q Consensus       165 ~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (447)
                      -||+.||.+++...  ..++++|+.++..+=|...-.....  ...+.......+..++++.... ....|    .++++
T Consensus       221 ~SGs~AN~aV~~AL--l~PGD~IL~ldl~~GGHlshg~~~~--~g~~vs~sG~~~~~vpY~~d~~-~g~ID----yd~le  291 (586)
T PLN02271        221 YSCTSANFAVYTGL--LLPGDRIMGLDSPSGGHMSHGYYTP--GGKKVSGASIFFESLPYKVNPQ-TGYID----YDKLE  291 (586)
T ss_pred             ccHHHHHHHHHHHh--cCCCCEEEEecCCCCCchhcccccc--cccccccccceEEEEEcccccc-cCccC----HHHHH
Confidence            39999999998644  3467888888765433322111000  0000000001133333322100 00123    56777


Q ss_pred             HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee-
Q 013235          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA-  323 (447)
Q Consensus       245 ~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s-  323 (447)
                      +....   .++..||+......      -.--+++++++|+++|++|++|-+|+ .|-.....+- .-+ ...|++|++ 
T Consensus       292 k~a~~---~rPKLII~g~Sayp------r~~D~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~-sP~-~~aDvvt~TT  359 (586)
T PLN02271        292 EKALD---FRPKILICGGSSYP------REWDYARFRQIADKCGAVLMCDMAHI-SGLVAAKECV-NPF-DYCDIVTSTT  359 (586)
T ss_pred             HHhhh---cCCeEEEECchhcc------CcCCHHHHHHHHHHcCCEEEEECccc-ccccccCcCC-CCC-cCCcEEEeCC
Confidence            65443   36778888542222      12228999999999999999999997 4432211110 011 136999765 


Q ss_pred             -ccccCCccccccccCHH--------------------HHHhhcCCcccccCCCChHHHHHHHH-HHHHHhhh---hHHH
Q 013235          324 -KGIGNGIPLGAVVTTPE--------------------IAEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQKD---KLQN  378 (447)
Q Consensus       324 -K~lg~G~pigav~~~~~--------------------i~~~l~~~~~~~T~~~np~a~aaala-~L~~i~~~---~l~~  378 (447)
                       |.|.|-- =|.++.+++                    +.+.+....+....+|......||++ +|+.+...   ++.+
T Consensus       360 HKtLrGPr-GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~  438 (586)
T PLN02271        360 HKSLRGPR-GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQ  438 (586)
T ss_pred             cccCCCCC-ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHH
Confidence             9986411 144555543                    44444433333444444333344443 46655443   4667


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCe
Q 013235          379 NAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       379 ~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      ++.++.+.|-+.|.+.  .+.++
T Consensus       439 QVv~NAkaLA~~L~~~--G~~vv  459 (586)
T PLN02271        439 QVKKNAQALASALLRR--KCRLV  459 (586)
T ss_pred             HHHHHHHHHHHHHHHC--CCeEe
Confidence            7777778877777664  44444

>PLN02452 phosphoserine transaminase

Probab=98.46  E-value=3.4e-05  Score=77.74  Aligned_cols=290  Identities=10%  Similarity=0.043  Sum_probs=158.1

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHh----------cccccccccchHHHHHHHHHHHhCCC--CCceEEEcCCH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKR----------IQHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSG  167 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~----------~~~~~~~~~~~~~~elae~L~~~~~~--~~~~v~~~~sG  167 (447)
                      +.+.|..|=..     -+++|.+++.+.+-.          ..|.+..| .....+..+.|.+++..  +.+.+++..||
T Consensus         7 ~~~~f~pGP~~-----lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f-~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsg   80 (365)
T PLN02452          7 RVFNFSAGPAT-----LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEF-LSIIQKAEADLRELLDIPDNYEVLFLQGGA   80 (365)
T ss_pred             ceEeeeCCCCC-----CCHHHHHHHHHHHhcccccCccccccCCCchHH-HHHHHHHHHHHHHHhCCCCCceEEEEeCcc
Confidence            34456654432     378999998887643          22322222 35566777777777753  44667778999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC--CCCcCCCCCCChHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN--PDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~--p~~~~~~~~~d~~~~~~~le~  245 (447)
                      |.++|+++.-...  +++++++...++.|....-.+....          .+..+..  ...+...  .+    .+++  
T Consensus        81 t~~~ea~~~nl~~--~~~~~l~~~~G~fg~r~~~~a~~~g----------~~~~~~~~~~~~~~~~--~~----~~~~--  140 (365)
T PLN02452         81 STQFAAIPLNLCK--PGDKADFVVTGSWSKKAAKEAKKYC----------KTNVIASGKDEKYTKI--PS----VSEW--  140 (365)
T ss_pred             HHHHHHHHHhcCC--CCCeEEEEECCHHHHHHHHHHHHhC----------CCcEEEecCCCCCCCC--CC----hHHc--
Confidence            9999999874322  4466777766665655433322110          0111110  0100000  01    1222  


Q ss_pred             HHHccCCCCeEEEEEccccCCCcee-eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeec
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGII-ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK  324 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK  324 (447)
                        +.  ..++..|.+-..-..+|+. .+    ++++   +   ++++|+|=+++ +|  + .-.-.+.+|+  |+..--|
T Consensus       141 --~~--~~~~~~v~~~hnETstGv~~~~----~~~i---~---~~~lvVDa~Ss-~g--~-~pidv~~~~v--~~~saqK  200 (365)
T PLN02452        141 --EL--TPDAKFVHICANETIHGVEFKD----YPDV---G---NVPLVADMSSN-FL--S-KPVDVSKYGV--IYAGAQK  200 (365)
T ss_pred             --CC--CCCCcEEEECCCCCCCcEecCc----cccc---C---CCeEEEECCcc-cc--C-cccCHHHcCE--EEEeccc
Confidence              11  1244555554444555664 32    3333   2   38999999997 32  1 2333455665  6655669


Q ss_pred             cccC-CccccccccCHHHHHhhcCC-----------cccccCCCC-hHHHHHHHHHHHHHhhh-h---HHHHHHHHHHHH
Q 013235          325 GIGN-GIPLGAVVTTPEIAEVLTRR-----------NYFNTFGGN-PVCTAAGHAVLKVIQKD-K---LQNNAHVVGSYL  387 (447)
Q Consensus       325 ~lg~-G~pigav~~~~~i~~~l~~~-----------~~~~T~~~n-p~a~aaala~L~~i~~~-~---l~~~~~~~g~~l  387 (447)
                      .+|. |  +|.++.++++.+.+...           ...++++.. -.+..+..++|+.|+++ +   +.++.+++.++|
T Consensus       201 ~lGP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l  278 (365)
T PLN02452        201 NVGPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLL  278 (365)
T ss_pred             ccCCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            9952 3  68899999988665431           112344443 44455556789998765 3   456666777777


Q ss_pred             HHHHHHHHHhcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          388 KERLTALKDKYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      ++.|++...=+....  ..|. ...+.+.+.        ......+|.+++.++|++..++
T Consensus       279 ~~~l~~~~G~y~~~~~~~~rs-~~~vsF~~~--------~~~~~~~f~~~~~~~g~~~~~G  330 (365)
T PLN02452        279 YDAIDESNGFYVCPVEKSVRS-LMNVPFTLG--------GSELEAEFVKEAAKAGMVQLKG  330 (365)
T ss_pred             HHHHHhCCCcccCCCChHHhC-CeEEEEEcC--------CchhHHHHHHHHHHCCCcccCC
Confidence            777766310011111  1222 223333332        1224678999999999987653

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.46  E-value=9.9e-05  Score=72.76  Aligned_cols=292  Identities=14%  Similarity=0.120  Sum_probs=151.6

Q ss_pred             CCCHHHHHHHHHHH-Hhcccc--ccccc-----chHHHHHHHHHH-HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCC
Q 013235          115 HCHPYVVDSIVNQI-KRIQHS--TVLYL-----NHAIADFAEALA-SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (447)
Q Consensus       115 h~~p~v~~A~~~~l-~~~~~~--~~~~~-----~~~~~elae~L~-~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~  185 (447)
                      +..|.|.+|.-..+ +++.+.  ..+|.     -+..++|+-..+ ++++.+.-+| =-.||++||.+++.....  +++
T Consensus        37 ~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anV-QPhSGs~AN~av~~All~--pGD  113 (413)
T COG0112          37 FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANV-QPHSGSQANQAVYLALLQ--PGD  113 (413)
T ss_pred             cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcccc-CCCCchHHHHHHHHHHcC--CCC
Confidence            35688988877655 344222  22322     233444444333 4454433333 346999999988864433  667


Q ss_pred             eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccC
Q 013235          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG  265 (447)
Q Consensus       186 ~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~  265 (447)
                      +|+..+-+.=|+..-..        +..+...-+..+++|.... ....|    .++++++..+..|   ..+|+     
T Consensus       114 timgm~l~~GGHltHg~--------~v~~sG~~~~~v~Y~vd~e-t~~ID----yD~~~k~a~e~kP---K~ii~-----  172 (413)
T COG0112         114 TIMGLDLSHGGHLTHGS--------PVNFSGKLFNVVSYGVDPE-TGLID----YDEVEKLAKEVKP---KLIIA-----  172 (413)
T ss_pred             eEecccCCCCCcccCCC--------CCCccceeEEeEecccccc-cCccC----HHHHHHHHHHhCC---CEEEE-----
Confidence            77766544322221111        1111111123333322111 01123    6778888876644   45554     


Q ss_pred             CCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee--ccccCCccccccccC-HHH
Q 013235          266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEI  341 (447)
Q Consensus       266 ~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~-~~i  341 (447)
                       |+..-+-+--+++++++|++.|+.|++|=++. |+--.|  .|- .-.. ..|+||-+  |.|-| -+=|.++++ +++
T Consensus       173 -G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G--~~p-~P~~-~AdvVTtTTHKTlrG-PrGG~Il~~~eel  246 (413)
T COG0112         173 -GGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGG--VHP-NPLP-HADVVTTTTHKTLRG-PRGGIILTNDEEL  246 (413)
T ss_pred             -CccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcc--cCC-CCCC-ccceEeCCcccCCCC-CCceEEEeccHHH
Confidence             22222223338999999999999999999864 332223  111 1111 26899744  88864 123456676 488


Q ss_pred             HHhhcCCcccccCCCChHHHHHHHH-HHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEee
Q 013235          342 AEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT  417 (447)
Q Consensus       342 ~~~l~~~~~~~T~~~np~a~aaala-~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~  417 (447)
                      .+.+....+..+.+|+-+-..||.+ ++....+.   ++++++-++.+.|-+.|.+.  .+.++..-. .--++.+++.+
T Consensus       247 ~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~--G~~vvsGgT-dnHl~lVDl~~  323 (413)
T COG0112         247 AKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER--GFKVVSGGT-DNHLVLVDLRS  323 (413)
T ss_pred             HHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc--CCeEecCCc-cceEEEEEccc
Confidence            8888766566666665444444443 23333333   46677777778777777663  444333110 01244555542


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          418 DRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       418 ~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      ...       ......+.|-+-||.+..+
T Consensus       324 ~~~-------~Gk~ae~~L~~~~It~NKN  345 (413)
T COG0112         324 KGL-------TGKKAEAALERAGITVNKN  345 (413)
T ss_pred             CCC-------CHHHHHHHHHHcCEeeccC
Confidence            110       1233334445568877653

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.45  E-value=4.1e-05  Score=79.22  Aligned_cols=252  Identities=20%  Similarity=0.193  Sum_probs=139.5

Q ss_pred             CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcC----C----
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTG----C----  184 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~----~----  184 (447)
                      .++...+++...+.+-.-....++  .....++...|++++.. ..-.-.|+.+|||||..|+.+||....    +    
T Consensus        74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~  153 (460)
T COG0076          74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK  153 (460)
T ss_pred             CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            456666666666554321111222  22233455555566543 223457999999999999999986531    1    


Q ss_pred             ---CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC-CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235          185 ---NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN-PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (447)
Q Consensus       185 ---~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~-p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~  260 (447)
                         ...|+...+.|-+..-+....+-          +...++. |..+    .-|    .++|++.+++.....  +|+.
T Consensus       154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~----------~~~~v~~~~~~~----~id----~~~l~~~i~~~t~~g--~vV~  213 (460)
T COG0076         154 PGGKPNIVCSETAHFSFEKAARYLGL----------GLRRVPTVPTDY----RID----VDALEEAIDENTIGG--VVVG  213 (460)
T ss_pred             cCCCCeEEecCcchhHHHHHHHHhCC----------CceeEEeccCcc----ccC----HHHHHHHHHhhccCc--eEEE
Confidence               12455666677666555544332          2222221 1111    123    677888887542211  2444


Q ss_pred             ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc--cCC-CcccccccCC-CCCEEEee--ccccCCccccc
Q 013235          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGS-HFWGFEAHGV-VPDIVTMA--KGIGNGIPLGA  334 (447)
Q Consensus       261 Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr--~G~-~~~~~~~~gv-~pDivt~s--K~lg~G~piga  334 (447)
                      ---....|.+-+    +++|.++|+++|+.+.+|-++.||-.  ... ..|.   +++ ..|-|+++  |-...-++.|+
T Consensus       214 ~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~---f~l~~vdSIt~d~HK~g~aP~~~G~  286 (460)
T COG0076         214 TAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWD---FGLEGVDSITVDGHKYGLAPIGCGV  286 (460)
T ss_pred             EecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchhh---cCCCCceEEEECcccccCCCCCceE
Confidence            333334455555    99999999999999999999988732  110 1111   233 34666665  55444467788


Q ss_pred             cccCHH--HHHhhcCCccc--------ccCCCC--hHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHH
Q 013235          335 VVTTPE--IAEVLTRRNYF--------NTFGGN--PVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       335 v~~~~~--i~~~l~~~~~~--------~T~~~n--p~a~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l  394 (447)
                      ++.+.+  +.+.+.....+        .|-.+.  ....++..++|+.+-.+++   .++..++.++|.+.|+++
T Consensus       287 il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~  361 (460)
T COG0076         287 VLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL  361 (460)
T ss_pred             EEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            887654  44433311100        111122  2234445567777755554   455557888888887776

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.42  E-value=1.2e-05  Score=81.14  Aligned_cols=248  Identities=15%  Similarity=0.115  Sum_probs=124.5

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc-cccccCCCeEeecCCCCcCCCCCCChHHHHHH
Q 013235          164 TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW-KFNVVQTGVHHALNPDPYRGVFGADGEMYAKD  242 (447)
Q Consensus       164 ~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~-~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~  242 (447)
                      .-||+.||.+++....  .++++|+.++-.. |.....   .....+ +.......+..++++.... ....|    .++
T Consensus        92 p~SGs~An~av~~aLl--~pGD~Im~l~l~~-GGHlsh---g~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID----~d~  160 (399)
T PF00464_consen   92 PHSGSQANLAVYMALL--KPGDTIMGLSLPH-GGHLSH---GSSVNFKKISASGLYFESVPYPVDPD-TGLID----YDE  160 (399)
T ss_dssp             -SSHHHHHHHHHHHHT---TT-EEEEEEGGG-T--GGG---T-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-----HHH
T ss_pred             cCCchHHHHHHHHHHH--hhcCcEEecChhh-cccccc---cccccccccccccceEEEEeeeeecC-CCeEC----HHH
Confidence            4699999988886443  3678888886543 222111   000000 0000000122222221100 11124    677


Q ss_pred             HHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEE
Q 013235          243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT  321 (447)
Q Consensus       243 le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt  321 (447)
                      +++++.+.   ++..||+.+..-     +-+.+ +++++++|++.|++|++|=.|. |+=-.|  .+. .-+.. .|+||
T Consensus       161 l~~~a~~~---kPklIi~G~S~y-----~~~~d-~~~~reIad~vga~l~~D~sH~~GLIa~g--~~~-~P~~~-ADvvt  227 (399)
T PF00464_consen  161 LEKLAKEH---KPKLIICGASSY-----PRPID-FKRFREIADEVGAYLMADISHIAGLIAGG--LFP-NPFPY-ADVVT  227 (399)
T ss_dssp             HHHHHHHH-----SEEEEE-SST-----SS----HHHHHHHHHHTT-EEEEE-TTTHHHHHTT--SS---GCCT-SSEEE
T ss_pred             HHHHHhhc---CCCEEEECchhc-----cCccC-HHHHHHHHHhcCcEEEecccccccceehh--eec-Ccccc-ceEEE
Confidence            88887765   456788765321     12222 6999999999999999999875 221122  221 22333 69998


Q ss_pred             ee--ccccCCccccccccC--------------HHHHHhhcCCcccccCCCChHHHHHHHH-HHHHHhh---hhHHHHHH
Q 013235          322 MA--KGIGNGIPLGAVVTT--------------PEIAEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQK---DKLQNNAH  381 (447)
Q Consensus       322 ~s--K~lg~G~pigav~~~--------------~~i~~~l~~~~~~~T~~~np~a~aaala-~L~~i~~---~~l~~~~~  381 (447)
                      ++  |.|.| -+-|.++++              +++.+.+....+....++.-....+|++ +|....+   .++.+++-
T Consensus       228 ~sThKtl~G-PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv  306 (399)
T PF00464_consen  228 GSTHKTLRG-PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVV  306 (399)
T ss_dssp             EESSGGG-S-SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             eeccccccc-cCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHH
Confidence            76  88874 233556777              7888877754444455554444444443 3444433   35677788


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      ++.+.|-+.|.+.  .+.++..- -..-++.|++....       ....+..+.|.+.||++..+
T Consensus       307 ~NAk~La~~L~~~--G~~v~~gg-Td~H~vlvd~~~~~-------~~g~~a~~~Le~~gI~vnkn  361 (399)
T PF00464_consen  307 KNAKALAEALQER--GFKVVTGG-TDNHQVLVDLRSFG-------IDGKEAEKALEEAGIIVNKN  361 (399)
T ss_dssp             HHHHHHHHHHHHT--T-EEGGGS--SSSEEEEEGGGGT-------S-HHHHHHHHHHTTEE-EEE
T ss_pred             HHHHHHHHHHhhC--CcEEEECC-CCCCeEEEEecccc-------cchHHHHHHHHhcCeeeccc
Confidence            8888888888775  44433211 01224445543211       11345666778889998643

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=98.38  E-value=1.4e-05  Score=80.35  Aligned_cols=281  Identities=11%  Similarity=0.064  Sum_probs=142.6

Q ss_pred             CCHHHHHHHHHHHHhccccc--ccc-------cchHHHHHHHHHHHhCCC-CCceEEEcCC-HHHHHHHHHHHHHhhcC-
Q 013235          116 CHPYVVDSIVNQIKRIQHST--VLY-------LNHAIADFAEALASKMPG-NLKVVFFTNS-GTEANELAIMMARLYTG-  183 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~--~~~-------~~~~~~elae~L~~~~~~-~~~~v~~~~s-GseA~e~Aik~ar~~t~-  183 (447)
                      .++.|.+|+.+.+.......  ...       ......+..++|++++.. ..++|+|+++ ||+|++.++..... .+ 
T Consensus        10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~-~~~   88 (355)
T cd00611          10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG-DKG   88 (355)
T ss_pred             CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC-CCC
Confidence            47899999998875431000  000       124567888999998874 3455667654 99999999975421 12 


Q ss_pred             CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccc
Q 013235          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (447)
Q Consensus       184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi  263 (447)
                      +..+|+ .+.|.-+.. -+.-.      .   ...+..+..+..  +.|+..    .+..+..+.   + ++..|.+--+
T Consensus        89 ~~~~i~-~g~~~~~~~-~~a~~------~---g~~~~~~~~~~~--g~~~~~----~~~~~~~~~---~-~~~lV~~~h~  147 (355)
T cd00611          89 TADYVV-TGAWSAKAA-KEAKR------Y---GGVVVIVAAKEE--GKYTKI----PDVETWDLA---P-DAAYVHYCSN  147 (355)
T ss_pred             eEEEEE-CCHHHHHHH-HHHHh------c---CCCcEEEecccc--cCCCCC----CCHhhcCCC---C-CCCEEEEeCC
Confidence            223332 233321110 01000      0   012233332211  112110    011111111   2 4455666666


Q ss_pred             cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHH
Q 013235          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEI  341 (447)
Q Consensus       264 ~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i  341 (447)
                      ...+|...         .++++.||+++++|=+|+ +|-   .-.-.+.++    ++..  -|.+| -.-+|.++.++++
T Consensus       148 ~t~tG~~~---------~~i~~~~g~~~~VDa~qs-~g~---~~idv~~~~----~~~ss~~K~lG-P~G~g~l~~~~~~  209 (355)
T cd00611         148 ETIHGVEF---------DEVPDTGGVPLVADMSSN-ILS---RPIDVSKFG----VIYAGAQKNLG-PAGVTVVIVRKDL  209 (355)
T ss_pred             cccccEEc---------ceecccCCCeEEEEcccc-ccC---CCCCHHHhC----EEEeecccccC-CCceEEEEECHHH
Confidence            66667753         245566999999999997 432   122223333    3333  38774 1227889999988


Q ss_pred             HHhhcCCc-----------ccccCCCCh-HHHHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          342 AEVLTRRN-----------YFNTFGGNP-VCTAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       342 ~~~l~~~~-----------~~~T~~~np-~a~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                      .+.+....           ...+++..+ ....+..++|+.++++ +   ..++.+++.++++++|+++..-+....+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~  289 (355)
T cd00611         210 LGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKR  289 (355)
T ss_pred             HhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHH
Confidence            87654310           011233333 3455555788988765 3   446666777777777776521010111101


Q ss_pred             ec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          406 GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       406 g~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .+ +..+.+.+...        ....++.+.+.++|+.+.
T Consensus       290 ~rs~~vvsf~~~~~--------~l~~~~~~~~~r~G~~~~  321 (355)
T cd00611         290 ARSRMNVPFRLGKE--------ELEKEFLKEAEAAGMIGL  321 (355)
T ss_pred             HcCceEEEEEcCCh--------hhhHHHHHHHHHCCCccc
Confidence            12 24455554221        112445567788898643

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.35  E-value=9.6e-05  Score=74.05  Aligned_cols=280  Identities=13%  Similarity=0.101  Sum_probs=148.5

Q ss_pred             CHHHHHHHHHHHHhc----------ccccccccchHHHHHHHHHHHhCCC--CCceEEEcCCHHHHHHHHHHHHHhhcCC
Q 013235          117 HPYVVDSIVNQIKRI----------QHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANELAIMMARLYTGC  184 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~----------~~~~~~~~~~~~~elae~L~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~t~~  184 (447)
                      +++|.+++++.+-..          .|.+..| .....+..+.|.+++..  +.+.+++..|||.+.++++.-...  ++
T Consensus        16 p~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F-~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~--~g   92 (364)
T PRK12462         16 PDTVLEQVRQAVVELPETGLSVLGMSHRSSWF-SSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSR--PG   92 (364)
T ss_pred             CHHHHHHHHHHHhcccccCccccccccccHHH-HHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCC--CC
Confidence            688999888777552          2322221 34556677777777653  456666677799999998864322  33


Q ss_pred             CeEE-EEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccc
Q 013235          185 NDII-SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (447)
Q Consensus       185 ~~ii-~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi  263 (447)
                      ++++ ++..++.|....-.+..      +    ..+..+...  ....|+.-..  .+++    +.  ..+...|.+-.+
T Consensus        93 ~~~~~~~~tG~fg~r~~~ea~~------~----g~v~~~~~~--~~~~~~~~p~--~~~~----~~--~~d~~~v~~t~N  152 (364)
T PRK12462         93 AAAPEYVTTGYWSRKAIGEASR------V----AAMRVVWDG--AASGYRTLPS--LAEL----DW--DARAPFRHYVSN  152 (364)
T ss_pred             CcEEEEEeCCHHHHHHHHHHHh------c----CCceEecCc--CCCCCCcCCC--HHHh----cc--CCCCcEEEEccC
Confidence            4444 55555544433222111      0    011111100  0001111000  1222    11  113455555555


Q ss_pred             cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHH
Q 013235          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEI  341 (447)
Q Consensus       264 ~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i  341 (447)
                      -..+|+..+         ++.+.+++++|+|=+-+ ++  + .-.-++.|    |++..|  |+||. --++.++.+++.
T Consensus       153 ETstGv~~~---------~~~~~~~~llvvD~sS~-~~--s-~pid~~~~----dvi~agsQKnlgP-~Gltvvivs~~a  214 (364)
T PRK12462        153 ETVEGLQFP---------DAAGLPDSPLIADMSSD-FM--S-RPFDVEAY----GMVYAHAQKNLGP-AGVTVAIIRRAL  214 (364)
T ss_pred             CCCceEecC---------cccccCCCeEEEEcCch-hh--C-CCCChHHc----cEEEeeccccCCC-CceEEEEECHHH
Confidence            555666653         23334689999998754 32  2 22333444    888776  99982 124667888888


Q ss_pred             HHhhcCC-----------cccccCCCCh-HHHHHHHHHHHHHhhh--h---HHHHHHHHHHHHHHHHHHHHHhcCCe--e
Q 013235          342 AEVLTRR-----------NYFNTFGGNP-VCTAAGHAVLKVIQKD--K---LQNNAHVVGSYLKERLTALKDKYGII--G  402 (447)
Q Consensus       342 ~~~l~~~-----------~~~~T~~~np-~a~aaala~L~~i~~~--~---l~~~~~~~g~~l~~~L~~l~~~~~~i--~  402 (447)
                      ++.....           ...+++...| ....+...+|++|.++  +   +.++.++.++.+++.+.++..-|...  .
T Consensus       215 l~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~  294 (364)
T PRK12462        215 LERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHR  294 (364)
T ss_pred             HhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCh
Confidence            7654331           0124555544 4455566789999776  4   34555566666666666652112111  2


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +.|+  .| -|.|.      .++++...+|.+++.++|++-..+
T Consensus       295 ~~RS--~m-nv~f~------~~~~~l~~~f~~~a~~~gl~~lkG  329 (364)
T PRK12462        295 AARS--TM-NVAFR------FRQPRLDTLFKEQSTEAGFCGLSG  329 (364)
T ss_pred             hhcC--cc-eEEEE------cCCHHHHHHHHHHHHHCCCccccC
Confidence            2333  22 22232      133456678999999999986543

>PLN02590 probable tyrosine decarboxylase

Probab=98.32  E-value=0.00075  Score=71.21  Aligned_cols=279  Identities=10%  Similarity=0.052  Sum_probs=144.8

Q ss_pred             HHHHHHHHHhCCCCC-------ceEEEcCCHHHHHHHHHHHHHhhcC-------C-CeEEEEcCCcccCchhhhhccCCC
Q 013235          144 ADFAEALASKMPGNL-------KVVFFTNSGTEANELAIMMARLYTG-------C-NDIISLRNAYHGNAAGTMGATAQS  208 (447)
Q Consensus       144 ~elae~L~~~~~~~~-------~~v~~~~sGseA~e~Aik~ar~~t~-------~-~~ii~~~~~yHG~~~~~~~~t~~~  208 (447)
                      .++.+.|++++..+.       .--+|+++|||||..||..||....       . +-+++....-|-+..-+..+.+..
T Consensus       173 ~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg  252 (539)
T PLN02590        173 IIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIH  252 (539)
T ss_pred             HHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCC
Confidence            344555555553221       1256899999999999999987421       1 224444555565555444443311


Q ss_pred             CccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235          209 NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (447)
Q Consensus       209 ~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~  286 (447)
                             ...+..++...  ...+.-|    .++|++.|++.  ....+.+|+..--....|.+-|    |++|.++|++
T Consensus       253 -------~~~vr~Vp~d~--~~~~~md----~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~  315 (539)
T PLN02590        253 -------EENIRLLKTDS--STNYGMP----PESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAKK  315 (539)
T ss_pred             -------cccEEEEeCCC--CCCCcCC----HHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHH
Confidence                   12345555431  1112234    45566666431  1224566666654455677766    9999999999


Q ss_pred             hCCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCHH--HHHhhcCCc-c----------
Q 013235          287 AGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE--IAEVLTRRN-Y----------  350 (447)
Q Consensus       287 ~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~~--i~~~l~~~~-~----------  350 (447)
                      ||+.|-+|-++.|+...-.+. -.-..|+ ..|=+++.  |-+...++.|+++.+..  +.+.+.... +          
T Consensus       316 ~g~WlHVDaA~GG~al~~~~~-r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~  394 (539)
T PLN02590        316 YGIWLHVDAAYAGNACICPEY-RKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDT  394 (539)
T ss_pred             hCCeEEEecchhhhhhcChhh-HHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCccccccc
Confidence            999999999998864322111 0011344 45777754  87777788888887643  222221100 0          


Q ss_pred             ---cc--cCC-CChHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC
Q 013235          351 ---FN--TFG-GNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL  421 (447)
Q Consensus       351 ---~~--T~~-~np~a~aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~  421 (447)
                         ..  +.. +-+......-.+|+.+-.+++.   ++.-++.++|.+.|++. .++.++..+ .. .++.+.+..+...
T Consensus       395 ~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~-~~fel~~~~-~l-~iVcFr~~~~~~~  471 (539)
T PLN02590        395 VVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD-PSFEVVTTR-YF-SLVCFRLAPVDGD  471 (539)
T ss_pred             CCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecCC-ce-EEEEEEecCCCCC
Confidence               00  111 1233333444556655555554   44445666666666553 123222221 11 1122333211100


Q ss_pred             CCCCHHHHHHHHHHHHhCCcee
Q 013235          422 KTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       422 ~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      .........++.+++.+.|.+.
T Consensus       472 ~~~~~~ln~~l~~~l~~~G~~~  493 (539)
T PLN02590        472 EDQCNERNRELLAAVNSTGKIF  493 (539)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEE
Confidence            0001234467888888887543

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.30  E-value=2.6e-05  Score=76.70  Aligned_cols=273  Identities=14%  Similarity=0.079  Sum_probs=147.6

Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHHH-HHHHHHHHHHhhc-----------CCCeEEEEcCCcccCchhhhhccCC
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGTE-ANELAIMMARLYT-----------GCNDIISLRNAYHGNAAGTMGATAQ  207 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGse-A~e~Aik~ar~~t-----------~~~~ii~~~~~yHG~~~~~~~~t~~  207 (447)
                      -..+.|+.+..++++..+.++|+..++.|- -+.-.|..+..+.           ++-+.++..++|-.+..-+-     
T Consensus        68 l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E-----  142 (425)
T PF12897_consen   68 LDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITE-----  142 (425)
T ss_dssp             SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHH-----
T ss_pred             cCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHH-----
Confidence            456677888888888777777766555443 3333444343321           13467777777743222111     


Q ss_pred             CCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc-CCCceeeCCCChHHHHHHH-HH
Q 013235          208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKS-IK  285 (447)
Q Consensus       208 ~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~-~~gG~~~~~~~~l~~l~~l-~~  285 (447)
                              ..|+..++.|....+|   |    ++.+|+++.+  ...|.++++-|.. +++|+ .++++-.++|..+ +.
T Consensus       143 --------~~Giemi~VpM~~dGP---D----mD~Ve~LV~~--D~svKGiWcVP~ySNPtG~-tySde~vrrlA~m~~A  204 (425)
T PF12897_consen  143 --------HFGIEMIPVPMTEDGP---D----MDMVEELVAE--DPSVKGIWCVPKYSNPTGI-TYSDEVVRRLAAMKTA  204 (425)
T ss_dssp             --------HCT-EEEEEEEETTEE--------HHHHHHHTHT--STTEEEEEE-SSS-TTT------HHHHHHHHHS--S
T ss_pred             --------hhCcEEEecCCCCCCC---C----HHHHHHHHhc--CCccceEEeCCCccCCCCc-cCCHHHHHHHhcCCcC
Confidence                    2477777777665544   3    7888888764  3489999999955 44665 4588888888887 34


Q ss_pred             HhCCEEEEeccccCccccCC--Cc-----ccccccCCCCCEE----EeeccccCCccccccccCHHHHHhhcCCcccccC
Q 013235          286 KAGGLCIADEVQAGFARTGS--HF-----WGFEAHGVVPDIV----TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF  354 (447)
Q Consensus       286 ~~g~llI~DEv~tGfgr~G~--~~-----~~~~~~gv~pDiv----t~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~  354 (447)
                      ..+..++.|.+|+=--.++.  ..     .....---.||.+    .+||.--.|-.++++.++++-++.+.......|.
T Consensus       205 A~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tI  284 (425)
T PF12897_consen  205 APDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTI  284 (425)
T ss_dssp             STT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S
T ss_pred             CcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCcee
Confidence            57899999999863211121  00     0000001147765    4678776777789999999888877654444667


Q ss_pred             CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHhcC----C-eeeEeecceeEEEEEeeCCCCCCCC
Q 013235          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT----ALKDKYG----I-IGDVRGRGFLLGVEFVTDRQLKTPA  425 (447)
Q Consensus       355 ~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~----~l~~~~~----~-i~~vrg~Gl~~giel~~~~~~~~p~  425 (447)
                      +-+-+.+..-..-|+..+ .++.+|+++-.+.|+-+++    .|.++++    + -+..+-.|.|+.++..+.       
T Consensus       285 gpdKvNQLRHvrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G-------  356 (425)
T PF12897_consen  285 GPDKVNQLRHVRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG-------  356 (425)
T ss_dssp             ---HHHHHHHHHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-------
T ss_pred             CccHHHHHHHHHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC-------
Confidence            777777766555554322 2566666666665555543    3333333    2 234566799999998643       


Q ss_pred             HHHHHHHHHHHHhCCceeec
Q 013235          426 KAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       426 ~~~~~~~~~~l~~~Gvlv~~  445 (447)
                        .+.++++.|++.||.+.+
T Consensus       357 --~AkrvV~lakeAGV~LT~  374 (425)
T PF12897_consen  357 --TAKRVVELAKEAGVALTP  374 (425)
T ss_dssp             ---HHHHHHHHHHTTEE---
T ss_pred             --hHHHHHHHHHHhCceeCC
Confidence              378899999999998754

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.29  E-value=3.1e-05  Score=76.00  Aligned_cols=253  Identities=17%  Similarity=0.144  Sum_probs=140.0

Q ss_pred             chHHHHHHHHHHHhCCCCC------ce--EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          140 NHAIADFAEALASKMPGNL------KV--VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~------~~--v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      -....++.+.+.+.+-+..      ++  .+=+.|||-|+-.+-+......++..|-+-+++|--+..-..         
T Consensus        68 i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~---------  138 (396)
T COG1448          68 IEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFE---------  138 (396)
T ss_pred             cCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHH---------
Confidence            4556677777777653311      12  234789999999999887777777888888888743322221         


Q ss_pred             ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE
Q 013235          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (447)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll  291 (447)
                          ..|.....+|+.....-+.|-    +.+...+++... ....++-.+-++++|.-+ +++-+++|.++.++.|.+-
T Consensus       139 ----~aGl~v~~Y~Yyd~~~~~~df----~~mla~L~~a~~-~~vvLLH~CcHNPTG~D~-t~~qW~~l~~~~~~r~lip  208 (396)
T COG1448         139 ----AAGLEVETYPYYDAETKGLDF----DGMLADLKTAPE-GSVVLLHGCCHNPTGIDP-TEEQWQELADLIKERGLIP  208 (396)
T ss_pred             ----hcCCceeeeeccccccccccH----HHHHHHHHhCCC-CCEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCCee
Confidence                124444444443222222342    333333333323 334555566888888765 7888999999999999999


Q ss_pred             EEeccccCccccCC-Ccccccc-cCCCCCEE---EeeccccC-Cccccccc---cCHHHHHhhcCC---cccccCCCChH
Q 013235          292 IADEVQAGFARTGS-HFWGFEA-HGVVPDIV---TMAKGIGN-GIPLGAVV---TTPEIAEVLTRR---NYFNTFGGNPV  359 (447)
Q Consensus       292 I~DEv~tGfgr~G~-~~~~~~~-~gv~pDiv---t~sK~lg~-G~pigav~---~~~~i~~~l~~~---~~~~T~~~np~  359 (447)
                      ++|=+|-||+.... .-++... ....|.++   .+||.+|= |-|+|+..   -+++.++.+...   .--++|+..|-
T Consensus       209 ~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~  288 (396)
T COG1448         209 FFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPA  288 (396)
T ss_pred             eeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCch
Confidence            99999999975331 1122211 12234344   38899983 66666643   345554433221   11145554443


Q ss_pred             HHHHHHHH------HHHH---hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          360 CTAAGHAV------LKVI---QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       360 a~aaala~------L~~i---~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      --+...++      |+..   |-+++.+++.++.+.|.+.|++.....+.-.-...+|+|-
T Consensus       289 ~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFs  349 (396)
T COG1448         289 HGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFS  349 (396)
T ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceee
Confidence            22222222      2221   1124566677777777777777543322222234445543

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=98.24  E-value=0.00013  Score=73.67  Aligned_cols=285  Identities=15%  Similarity=0.097  Sum_probs=144.9

Q ss_pred             CHH-HHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCC--CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235          117 HPY-VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (447)
Q Consensus       117 ~p~-v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~  193 (447)
                      +|. ..+|+.+++-...|.+..| .....+..+.|.+.+..  +.+.+++..|||.++|+++.-... .++.++++. + 
T Consensus        15 ~~~~~~~~~~~~~~~~~HRs~~F-~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-~~g~~vLv~-g-   90 (374)
T TIGR01365        15 RPGWSIEELKNAPLGRSHRSKLG-KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-CRGVDVLAW-E-   90 (374)
T ss_pred             CchhhHHHHhhhhcccCcCCHHH-HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-CCCCeEEEE-C-
Confidence            456 5666665544444533322 34556667777777753  345678899999999999975331 134566653 3 


Q ss_pred             cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      +.|.....-.+..   +..    ..+..+.      .+|+...+  .++++.      ...+..+..|+   ++|+..+ 
T Consensus        91 ~FG~r~~~eia~~---~g~----~~v~~l~------~~~g~~~~--~~~ve~------~~~v~~vhnET---STGv~np-  145 (374)
T TIGR01365        91 SFGKGWVTDVTKQ---LKL----PDVRVLE------AEYGKLPD--LKKVDF------KNDVVFTWNGT---TSGVRVP-  145 (374)
T ss_pred             HHHHHHHHHHHHh---cCC----CCcEEEc------CCCCCCCC--HHHcCC------CCCEEEecCCC---chheecc-
Confidence            4344322111100   000    0122222      12322110  334431      12455555553   3466665 


Q ss_pred             CChHHHHHHHHHH-hCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCC--
Q 013235          274 PGYLPAVYKSIKK-AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRR--  348 (447)
Q Consensus       274 ~~~l~~l~~l~~~-~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~--  348 (447)
                         ++   +++++ +++++|+|=|-+ ||  | .-+-++  +  .|+++.|  |+|+.---+|.++.+++..+.....  
T Consensus       146 ---v~---~i~~~~~~~lliVDavSs-~g--~-~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~  211 (374)
T TIGR01365       146 ---NG---DFIPADREGLTICDATSA-AF--A-QDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTP  211 (374)
T ss_pred             ---cc---ccccccCCCcEEEEccch-hc--C-CCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCC
Confidence               33   33333 589999998764 53  2 222223  2  6988776  9998421247788888776554320  


Q ss_pred             -----c---------------ccccCCCCh-HHHHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCee-
Q 013235          349 -----N---------------YFNTFGGNP-VCTAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIG-  402 (447)
Q Consensus       349 -----~---------------~~~T~~~np-~a~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~-  402 (447)
                           .               ...|...+| .+..+.+.+|+.++++ +   ..++.+++++.++++++++-- +.... 
T Consensus       212 y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~-l~~~~~  290 (374)
T TIGR01365       212 AWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNW-IHFLAE  290 (374)
T ss_pred             CCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCC-cccCCC
Confidence                 0               012333333 3444556667777664 3   445566667777777776520 11121 


Q ss_pred             --eEeecceeEEEEEeeCCC---CCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          403 --DVRGRGFLLGVEFVTDRQ---LKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       403 --~vrg~Gl~~giel~~~~~---~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                        ..|+.. .+.+.+..+..   ...|.-....++.+.|+++||.+..+
T Consensus       291 ~~~~rS~t-vt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G  338 (374)
T TIGR01365       291 TPEIRSNT-SVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIG  338 (374)
T ss_pred             ChhhcCCC-eEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEecc
Confidence              133322 23344311100   00111112467899999999988643

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.22  E-value=0.0005  Score=69.61  Aligned_cols=228  Identities=18%  Similarity=0.174  Sum_probs=121.7

Q ss_pred             HHHHHHHHHhCCCC-------CceEEEcCCHHHHHHHHHHHHHhhc-------C----CCeEEEEcCCcccCchhhhhcc
Q 013235          144 ADFAEALASKMPGN-------LKVVFFTNSGTEANELAIMMARLYT-------G----CNDIISLRNAYHGNAAGTMGAT  205 (447)
Q Consensus       144 ~elae~L~~~~~~~-------~~~v~~~~sGseA~e~Aik~ar~~t-------~----~~~ii~~~~~yHG~~~~~~~~t  205 (447)
                      .++.+.|++++..+       ...-+|+++|||||..|+..||...       +    .+.+++....-|-+..-+....
T Consensus        82 ~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l  161 (373)
T PF00282_consen   82 REVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL  161 (373)
T ss_dssp             HHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT
T ss_pred             HHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee
Confidence            34555566666433       1246799999999999999998642       1    2345666665675555554443


Q ss_pred             CCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-CC-CeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          206 AQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-SG-HVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       206 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~~-~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      +.          ++..++.....    .-|    .++|++.+++.. .+ .+.+|+..--....|.+-+    +++|.++
T Consensus       162 Gl----------g~~~I~~~~~~----~md----~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i  219 (373)
T PF00282_consen  162 GL----------GVRKIPTDEDG----RMD----IEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADI  219 (373)
T ss_dssp             TS----------EEEEE-BBTTS----SB-----HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHH
T ss_pred             ee----------EEEEecCCcch----hhh----HHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhh
Confidence            32          34455432211    124    456666654321 22 3445555444444577766    9999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCHH-HH-HhhcCC-cc-------
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE-IA-EVLTRR-NY-------  350 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~~-i~-~~l~~~-~~-------  350 (447)
                      |+++++.+-+|-++.|....- ...-.-..++ ..|=+++.  |-++.-++.|.++.+.+ .. +.+... .+       
T Consensus       220 ~~~~~~wlHVDaA~gg~~~~~-~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~  298 (373)
T PF00282_consen  220 CEKYNIWLHVDAAYGGSALLS-PEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRE  298 (373)
T ss_dssp             HHHCT-EEEEEETTGGGGGGH-CTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SS
T ss_pred             ccccceeeeeccccccccccc-ccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccc
Confidence            999999999999998732211 1111111233 34777655  87776778888887653 32 223110 00       


Q ss_pred             --------cccCCCC-hHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHH
Q 013235          351 --------FNTFGGN-PVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTAL  394 (447)
Q Consensus       351 --------~~T~~~n-p~a~aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l  394 (447)
                              ..|..+. .......-.+|+.+-.+++.   ++..++.++|.+.|++.
T Consensus       299 ~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~  354 (373)
T PF00282_consen  299 SDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKD  354 (373)
T ss_dssp             S-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                    0223333 33333444556655555554   44445566666665554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.15  E-value=7.5e-05  Score=75.80  Aligned_cols=229  Identities=15%  Similarity=0.156  Sum_probs=122.1

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc-C
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV-Q  216 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~-~  216 (447)
                      +...+.|..+..++.++. .+..|++|+.|.+|.+++..+..  ++++|+ ++...|=+...++.+++.. .|..+.. .
T Consensus        64 p~G~I~eAe~~aA~~fGA-d~t~flvnGsT~g~~a~i~a~~~--~gd~VL-v~RN~HkSv~~alil~ga~Pvyi~p~~~~  139 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGA-DKTFFLVNGSTSGNQAMIMALCR--PGDKVL-VDRNCHKSVYNALILSGAIPVYIPPEDNE  139 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTE-SEEEEESSHHHHHHHHHHHHHTT--TTCEEE-EETT--HHHHHHHHHHTEEEEEEEEEE-T
T ss_pred             CccHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHhcC--CCCEEE-EcCCcHHHHHHHHHHcCCeEEEecCCccc
Confidence            345666777777777743 34455567777777777765432  445554 5555677777777776642 2222210 0


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE---EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA---GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a---avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                      .|+..-..+..    +      ..+.+++.+++. ++..+   +||+.|..  .|++..    +++|.++|++++++|++
T Consensus       140 ~gi~~~i~~~~----~------~~~~i~~~l~~~-p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llv  202 (417)
T PF01276_consen  140 YGIIGGISPDE----F------NEEDIEEALKEH-PDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLV  202 (417)
T ss_dssp             TS-BEEB-GGG----G------SHHHHHHHHHHC-TTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEE
T ss_pred             cCCccCCChhh----h------hHHHHHHHHHhC-ccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEE
Confidence            12211111100    0      036788888765 33334   77777743  467776    99999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCC-------EEEee--ccccCCccccccc-cC-------HHHHHhhcCCcccccCCC
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPD-------IVTMA--KGIGNGIPLGAVV-TT-------PEIAEVLTRRNYFNTFGG  356 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pD-------ivt~s--K~lg~G~pigav~-~~-------~~i~~~l~~~~~~~T~~~  356 (447)
                      ||++.+.-.-. .+. -.....-.|       ++|-|  |.++ ++.-++++ .+       +.+.+.+.   ...|-+-
T Consensus       203 DEAhGah~~F~-~lp-~~a~~~gad~~~~~~~~vvqS~HKtL~-altQts~lh~~~~~~v~~~~~~~~l~---~~~TTSP  276 (417)
T PF01276_consen  203 DEAHGAHFGFH-PLP-RSALALGADRPNDPGIIVVQSTHKTLP-ALTQTSMLHVKGDRIVDHERVNEALS---MHQTTSP  276 (417)
T ss_dssp             E-TT-TTGGCS-GGG-TTCSSTTSS-CTSBEEEEEEEHHHHSS-S-TT-EEEEEETCCCTTHHHHHHHHH---HHS-SS-
T ss_pred             EccccccccCC-CCc-cchhhccCccccccceeeeechhhccc-ccccceEEEecCCCcccHHHHHHHHH---HHcCCCh
Confidence            99986532111 111 123445567       88877  7765 23223322 22       22223222   2233333


Q ss_pred             ChHHHHHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHHHHH
Q 013235          357 NPVCTAAGHAVLKVI-Q--KDKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       357 np~a~aaala~L~~i-~--~~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      +=+-+|..-.+.+.+ .  .+.+.+++.+....+|+.|+++
T Consensus       277 SY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~  317 (417)
T PF01276_consen  277 SYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL  317 (417)
T ss_dssp             -HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333444555 2  2357788888899999999763

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.12  E-value=0.00039  Score=69.31  Aligned_cols=260  Identities=20%  Similarity=0.308  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEE-cCCHHHHHHHHHHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          141 HAIADFAEALASKMPGNLKVVFF-TNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~-~~sGseA~e~Aik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..+.+|.+.|+++.  +++.|-+ -|+|++.=-+.+.+.|.|.     +.++++..-.|-||.-..+.++.+        
T Consensus       109 ~li~~Lq~~L~~IT--G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G--------  178 (496)
T COG1003         109 ELIYELQEWLKEIT--GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAG--------  178 (496)
T ss_pred             HHHHHHHHHHHHhc--CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcC--------
Confidence            45567888888887  4665544 6799998888888888873     235566667888998887776653        


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                          +..+..+...++.  .|    +++|++.++    +++||+.+. .++.-|+..   +-+++|+++.+++|.+|..|
T Consensus       179 ----~~VV~V~~~~~G~--VD----lddLk~k~~----~~~AalMiT-nPsT~GvFE---~~I~ei~~ivH~~Gg~vY~D  240 (496)
T COG1003         179 ----FKVVVVKCDENGN--VD----LDDLRAKAE----DNLAALMIT-NPSTLGVFE---EDIREICEIVHEAGGQVYYD  240 (496)
T ss_pred             ----ceEEEEecCCCCC--cc----HHHHHHHhc----cceeEEEec-cCcccccch---hhHHHHHHHHHHcCCEEEec
Confidence                3333322222221  23    677777665    467766554 223335443   34889999999999999999


Q ss_pred             cc----ccCccccCCCcccccccCCCCCEE------EeeccccC-CccccccccCHHHHHhhcC----Cc----------
Q 013235          295 EV----QAGFARTGSHFWGFEAHGVVPDIV------TMAKGIGN-GIPLGAVVTTPEIAEVLTR----RN----------  349 (447)
Q Consensus       295 Ev----~tGfgr~G~~~~~~~~~gv~pDiv------t~sK~lg~-G~pigav~~~~~i~~~l~~----~~----------  349 (447)
                      -+    +.|..|-| .+ ++       ||+      ||+=.-|| |--.|-|..+++++..+..    ..          
T Consensus       241 GANlNA~vG~~rPG-d~-G~-------DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~  311 (496)
T COG1003         241 GANLNAIVGLARPG-DM-GF-------DVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDG  311 (496)
T ss_pred             Ccchhhhhcccccc-cc-cc-------ceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCC
Confidence            75    66666666 22 22       554      55555555 4557777777777776653    10          


Q ss_pred             -----ccccCCCChHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCC-
Q 013235          350 -----YFNTFGGNPVCTAAGHAVLKVIQKDKLQN---NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-  420 (447)
Q Consensus       350 -----~~~T~~~np~a~aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~-  420 (447)
                           -..+|-||..-...+.+-+..+-.++|.+   .+--+.+|+..+|+.   .|+++  ..+.. .+.-||+-+-. 
T Consensus       312 ~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~---~y~~~--y~~~~-~~~HE~ild~r~  385 (496)
T COG1003         312 KKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG---YYPVP--YTGEN-RVAHECILDARP  385 (496)
T ss_pred             CccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh---cCccc--cCCCC-cceeEEEeechH
Confidence                 12356667666666777777776665542   333456788877766   33332  23333 45566654321 


Q ss_pred             CCCCCHHHHHHHHHHHHhCCcee
Q 013235          421 LKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       421 ~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      .+......+..+++.|++.|+.-
T Consensus       386 l~~~~Gv~~~DvAKrLlD~GfHa  408 (496)
T COG1003         386 LKKETGVRALDVAKRLLDYGFHA  408 (496)
T ss_pred             hHhhcCCcHHHHHHHHHhcCCCC
Confidence            11111223567999999999864

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.12  E-value=0.00036  Score=69.49  Aligned_cols=223  Identities=16%  Similarity=0.131  Sum_probs=132.0

Q ss_pred             CHHHHHHHHHHHHhcccccccc-----cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~-----~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      +|++++|+.+.+.....- ..+     ..+-..++++.++...  +.+.+..+|.-+.|+.+.+-..-.  ++..|+..-
T Consensus        40 ~~e~iea~~~~~~~~v~L-e~~l~~g~~~~R~~~~~~~~~~~~--~aea~~ivnnn~aAVll~~~al~~--~~EvVis~g  114 (395)
T COG1921          40 SPEAIEAMKEAMRAPVEL-ETDLKTGKRGARLTELAELLCGLT--GAEAAAIVNNNAAAVLLTLNALAE--GKEVVVSRG  114 (395)
T ss_pred             CHHHHHHHHHHhccccee-eeecccchhhHHHHHHHHHHhccc--chhheeeECCcHHHHHHHHhhhcc--CCeEEEEcc
Confidence            588999888776653211 111     1122234555555443  235567778888888877752221  334444321


Q ss_pred             C---CcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCc
Q 013235          192 N---AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG  268 (447)
Q Consensus       192 ~---~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG  268 (447)
                      .   ++|-.....+...            |+..+..-+.-        .....+++..|....  ....-+..+..+..|
T Consensus       115 ~lV~gg~~~v~d~~~~a------------G~~l~EvG~tn--------~t~~~d~~~AIne~t--a~llkV~s~~~~f~~  172 (395)
T COG1921         115 ELVEGGAFRVPDIIRLA------------GAKLVEVGTTN--------RTHLKDYELAINENT--ALLLKVHSSNYGFTG  172 (395)
T ss_pred             ccccCCCCChhHHHHHc------------CCEEEEecccC--------cCCHHHHHHHhccCC--eeEEEEeeccccccc
Confidence            1   3444444444333            33332221111        111567887776432  333445555556666


Q ss_pred             eeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEEEee--ccccCCccccccccCHHHHHhh
Q 013235          269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVL  345 (447)
Q Consensus       269 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l  345 (447)
                      .+.     ++++.++|+++|+++|+|..-...-+   ..... +....-+|+|++|  |-|+ |..-|.+++++++++.+
T Consensus       173 ~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~---~e~~l~~~la~GaDLV~~SgdKllg-GPqaGii~GkKelI~~l  243 (395)
T COG1921         173 MLS-----EEELVEIAHEKGLPVIVDLASGALVD---KEPDLREALALGADLVSFSGDKLLG-GPQAGIIVGKKELIEKL  243 (395)
T ss_pred             ccc-----HHHHHHHHHHcCCCEEEecCCccccc---cccchhHHHhcCCCEEEEecchhcC-CCccceEechHHHHHHH
Confidence            665     88999999999999999986421111   11222 2334568999998  7776 44567799999999988


Q ss_pred             cCCcccccCCCChHHHHHHHHHHHHHhhhh
Q 013235          346 TRRNYFNTFGGNPVCTAAGHAVLKVIQKDK  375 (447)
Q Consensus       346 ~~~~~~~T~~~np~a~aaala~L~~i~~~~  375 (447)
                      ........+-..+...++-.++|+.....+
T Consensus       244 q~~~l~Ralrv~K~tla~l~~aLe~y~~~~  273 (395)
T COG1921         244 QSHPLKRALRVDKETLAALEAALELYLQPE  273 (395)
T ss_pred             HhhhhhhhhhcCcHhHHHHHHHHHHHcCch
Confidence            765555556667888899899998876543

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.03  E-value=7.9e-06  Score=80.50  Aligned_cols=223  Identities=18%  Similarity=0.175  Sum_probs=56.1

Q ss_pred             ccCCCC--CHHHHHHHHHHHHhccc------ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc
Q 013235          111 VCCGHC--HPYVVDSIVNQIKRIQH------STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT  182 (447)
Q Consensus       111 ~~lGh~--~p~v~~A~~~~l~~~~~------~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t  182 (447)
                      .+||-+  ++++.+++.+.+..+..      ...+.  .-+..+.+.|++..  +.+..+++|+...|+.+++....  .
T Consensus        11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg--~R~~~v~~ll~~lt--gAeaA~VvNnnaAAv~L~l~~la--~   84 (367)
T PF03841_consen   11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRG--SRYAHVEELLCELT--GAEAALVVNNNAAAVLLALNTLA--K   84 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccccccccccccc--ccccccccccccccccccccccc--c
Confidence            456644  46777777765544311      00111  11233445555555  34567788998888888776322  1


Q ss_pred             CCCeEEEEcC-------CcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          183 GCNDIISLRN-------AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       183 ~~~~ii~~~~-------~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      + ++||+-+|       +|.  ....+..            .|...+..=        ......+++.++.|..    ++
T Consensus        85 ~-~EvIvsRGelVeiGgsFR--ip~vm~~------------sGa~lvEVG--------ttN~t~~~Dye~AI~e----~T  137 (367)
T PF03841_consen   85 G-KEVIVSRGELVEIGGSFR--IPDVMRQ------------SGARLVEVG--------TTNRTHLSDYEKAITE----NT  137 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-cccccccccccccccccc--ccccccc------------ccccccccc--------cccccccccccccccc----cc
Confidence            3 34443322       221  1111111            222222110        0011124566666642    34


Q ss_pred             EEE-EEcc----ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC------ccccCCCcccccccCCCCCEEEee-
Q 013235          256 AGF-LSES----IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG------FARTGSHFWGFEAHGVVPDIVTMA-  323 (447)
Q Consensus       256 aav-i~Ep----i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG------fgr~G~~~~~~~~~gv~pDivt~s-  323 (447)
                      +++ -+-+    ++|-.+.+.     ++++.+++++|++++|.|-.-..      +|-.+ +.-..+....-.|+|||| 
T Consensus       138 a~ll~Vh~Sn~~i~GFt~~~~-----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~-Ep~v~~~~~~GaDlV~fSG  211 (367)
T PF03841_consen  138 AALLKVHTSNFRIQGFTGEVS-----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD-EPTVQEYLAAGADLVTFSG  211 (367)
T ss_dssp             ----------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEET
T ss_pred             ccccccccccccccccccccc-----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCcc-ccHHHHHhhcCCCEEEEEC
Confidence            443 4543    233233333     89999999999999999965311      12111 111112233457999998 


Q ss_pred             -ccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh
Q 013235          324 -KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (447)
Q Consensus       324 -K~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~  373 (447)
                       |-||| --.|.+++++++++.+......-.+-.+.+..++-.++|+...+
T Consensus       212 dKlLGG-PQaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~  261 (367)
T PF03841_consen  212 DKLLGG-PQAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLD  261 (367)
T ss_dssp             TSSSSS--S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH---
T ss_pred             CCcCCC-CCeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHH
Confidence             87775 33578999999999987655556666788999999999987653

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.00  E-value=0.0015  Score=73.31  Aligned_cols=276  Identities=14%  Similarity=0.119  Sum_probs=146.0

Q ss_pred             CCHHHHHHHHHHHHhccccccccc------chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC-CCeEE
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL------NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-CNDII  188 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~------~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~-~~~ii  188 (447)
                      -++.|.+++.+....+...+...+      -..+.++...++++++-+..++-+..++|.+.|+++...+...+ +++|+
T Consensus       117 ~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~Vl  196 (993)
T PLN02414        117 VPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFL  196 (993)
T ss_pred             CCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEE
Confidence            455555888776654422222111      12345777888888876667788999999999977754443223 35666


Q ss_pred             EEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCc
Q 013235          189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG  268 (447)
Q Consensus       189 ~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG  268 (447)
                      +.+..| ..+...+..-        ....|+..+..|..              ...    . ..+.+++++ -.+.+..|
T Consensus       197 Vs~~~h-P~~~~v~~t~--------a~~~GieV~~v~~~--------------~~~----~-~~~~v~~vl-vq~P~~~G  247 (993)
T PLN02414        197 IASNCH-PQTIDVCQTR--------ADGLGLEVVVADEK--------------DFD----Y-SSGDVCGVL-VQYPATDG  247 (993)
T ss_pred             EcCccC-HhHHHHHHHh--------hhhcCCEEEEecch--------------hhc----c-ccCceEEEE-EecCCCCe
Confidence            655555 4443333110        01124433322210              000    0 122566665 34555678


Q ss_pred             eeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe-ecccc-----CCccccccccCHHHH
Q 013235          269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM-AKGIG-----NGIPLGAVVTTPEIA  342 (447)
Q Consensus       269 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~-sK~lg-----~G~pigav~~~~~i~  342 (447)
                      .+.+    +++|.++|+++|+++|+ -++ .++-++  +-....+  -.||++. +..++     ||-..|++.+++++.
T Consensus       248 ~v~d----v~~I~~~ah~~GaL~iV-aad-~lal~~--l~~pge~--GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~  317 (993)
T PLN02414        248 EVLD----YAEFVKNAHANGVKVVM-ATD-LLALTM--LKPPGEW--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYK  317 (993)
T ss_pred             EEcC----HHHHHHHHHHcCCEEEE-EEC-HHHhcC--CCCHhhc--cCcEEEECCCccccCCCCCCCCeeEEEECHHHH
Confidence            8877    99999999999999999 322 232222  1111223  3488763 23333     454478888888887


Q ss_pred             HhhcCCc--c-----c-----------------ccCCCChHHHHHHHHHHH-----HHhhh---hHHHHHHHHHHHHHHH
Q 013235          343 EVLTRRN--Y-----F-----------------NTFGGNPVCTAAGHAVLK-----VIQKD---KLQNNAHVVGSYLKER  390 (447)
Q Consensus       343 ~~l~~~~--~-----~-----------------~T~~~np~a~aaala~L~-----~i~~~---~l~~~~~~~g~~l~~~  390 (447)
                      ..+....  .     +                 -....|..+..+..+.+.     .+-..   +..+++.++..+++++
T Consensus       318 r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~  397 (993)
T PLN02414        318 RLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAG  397 (993)
T ss_pred             hhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            7554210  0     0                 011223322222223332     11122   3457788888888888


Q ss_pred             HHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       391 L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |.++  .+..... +--+ .+.|.+        +.   ..++.+.|.++||.++.
T Consensus       398 L~~~--G~~~~~~-~~f~-~vt~~~--------~~---~~~v~~~L~~~gI~l~~  437 (993)
T PLN02414        398 LKKL--GFQVQSL-PFFD-TVKVKC--------SD---ADAIADAAAKVGINLRV  437 (993)
T ss_pred             Hhhc--CCccCCC-CCcC-eEEEec--------CC---HHHHHHHHHHCCCeeEE
Confidence            8654  2332222 1111 112222        11   25688999999997753

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.97  E-value=0.00088  Score=75.21  Aligned_cols=247  Identities=13%  Similarity=0.110  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCC--CeEEEEcCCcccCchhhhhccCCCCccccccCCCeE
Q 013235          143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC--NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (447)
Q Consensus       143 ~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~--~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~  220 (447)
                      +.++-..++++++-+..++-+..++|.+.|+++...+ ++++  ++|++.+..| ..+...+...        ....|+.
T Consensus       123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~h-P~~~~v~~t~--------a~~~G~e  192 (954)
T PRK05367        123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VSKSKSNRFFVDDDVH-PQTLDVLRTR--------AEPLGIE  192 (954)
T ss_pred             HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hccCCCCEEEEcCccC-HHHHHHHHHH--------HHhCCCE
Confidence            4567777888886666677889999999996665434 4442  6777766655 3333222110        0112444


Q ss_pred             eecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc
Q 013235          221 HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF  300 (447)
Q Consensus       221 ~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf  300 (447)
                      .+..|..      .|       ++       .++++++ +-.+++..|.+.+    +++|.++|+++|+++++|=.+...
T Consensus       193 v~~~~~~------~d-------~~-------~~~~~~v-lvq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al  247 (954)
T PRK05367        193 VVVGDAA------KA-------LD-------HDDVFGV-LLQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLAL  247 (954)
T ss_pred             EEEecCc------cC-------CC-------cccEEEE-EEecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhc
Confidence            3332211      01       10       2356665 4445677888886    999999999999999999755322


Q ss_pred             cccCCCcccccccCCCCCEEEe-----ecccc-CCccccccccCHHHHHhhcCCccc--ccCCC----------------
Q 013235          301 ARTGSHFWGFEAHGVVPDIVTM-----AKGIG-NGIPLGAVVTTPEIAEVLTRRNYF--NTFGG----------------  356 (447)
Q Consensus       301 gr~G~~~~~~~~~gv~pDivt~-----sK~lg-~G~pigav~~~~~i~~~l~~~~~~--~T~~~----------------  356 (447)
                      +- + .  ....+|  .||++.     +=.+| ||--.|++.+++++.+.+.....+  ....|                
T Consensus       248 ~~-l-~--~pge~G--aDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiR  321 (954)
T PRK05367        248 TL-L-T--PPGEMG--ADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIR  321 (954)
T ss_pred             cC-C-C--ChhhcC--CCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccc
Confidence            11 1 0  112223  388763     32233 333377888899888777542111  00001                


Q ss_pred             ------C---hHHHHHHHHH--HHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCC
Q 013235          357 ------N---PVCTAAGHAV--LKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK  422 (447)
Q Consensus       357 ------n---p~a~aaala~--L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~  422 (447)
                            |   ..+..+.++.  +..+..+   ++.+++..+..++.++|++.  .+.....    ..+--+.+.-     
T Consensus       322 rekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~--G~~~~~~----~~f~~~~~~~-----  390 (954)
T PRK05367        322 REKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL--GLEVVHD----SFFDTLTVEV-----  390 (954)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc--CcccCCC----CCCCeEEEeC-----
Confidence                  1   1112222222  2333343   34567777888888888653  3332222    1111111111     


Q ss_pred             CCCHHHHHHHHHHHHhCCceee
Q 013235          423 TPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       423 ~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                       +  ..+.++.+.|+++||.++
T Consensus       391 -~--~~~~~i~~~l~~~gi~~~  409 (954)
T PRK05367        391 -G--GDAAAVLARALAAGINLR  409 (954)
T ss_pred             -C--CCHHHHHHHHHHCCceec
Confidence             1  014679999999999874

>PRK15029 arginine decarboxylase; Provisional

Probab=97.94  E-value=0.0011  Score=72.31  Aligned_cols=231  Identities=11%  Similarity=0.074  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc-CCCe
Q 013235          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV-QTGV  219 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~-~~g~  219 (447)
                      .+.+..+..++.++. .+..|.+|+-|.+|.+++..+.   ++.+.|.++...|=+...++.+++.. .|..+.. ..|+
T Consensus       206 ~I~eAq~~aA~~fgA-~~t~FlvNGST~gn~a~i~a~~---~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi  281 (755)
T PRK15029        206 AFGESEKYAARVFGA-DRSWSVVVGTSGSNRTIMQACM---TDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGI  281 (755)
T ss_pred             HHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCC
Confidence            444554555555643 3556667777777776665433   33444556666687878888777643 2222110 0111


Q ss_pred             EeecCCCCcCCCCCCChHHH-HHHHHHHHHccCCC-------C-eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235          220 HHALNPDPYRGVFGADGEMY-AKDVQDLIDFGTSG-------H-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (447)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~-~~~le~~i~~~~~~-------~-~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~l  290 (447)
                      ..-           .+...+ .+.+++.+++. |+       + .++||+.|..  .|++..    +++|.++|+++|++
T Consensus       282 ~~~-----------i~~~~~~~e~i~~~l~~~-p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~  343 (755)
T PRK15029        282 IGP-----------IYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDR  343 (755)
T ss_pred             ccC-----------CCccccCHHHHHHHHHhC-chhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCe
Confidence            100           010000 35666666543 21       1 2566666633  356665    89999999999999


Q ss_pred             EEEeccccCccccCCCc---ccccc--cC-CCCC-EEEee--ccccCCccccccc-cCHH---HH-HhhcCC-cccccCC
Q 013235          291 CIADEVQAGFARTGSHF---WGFEA--HG-VVPD-IVTMA--KGIGNGIPLGAVV-TTPE---IA-EVLTRR-NYFNTFG  355 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~---~~~~~--~g-v~pD-ivt~s--K~lg~G~pigav~-~~~~---i~-~~l~~~-~~~~T~~  355 (447)
                      |++||++.+.-+-.+.+   .+.+.  .. .-+| ++|-|  |.+++ +..++++ .+..   +- +.+... ....|.+
T Consensus       344 llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~~~qSTS  422 (755)
T PRK15029        344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTS  422 (755)
T ss_pred             EEEECccccccccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHHHHcCCC
Confidence            99999986643222111   11110  01 3378 77655  76652 3333332 2111   11 122211 1122223


Q ss_pred             CChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHH
Q 013235          356 GNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       356 ~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      -+=+-+|..-.+.+.++.   +++.+.+.+....+|+.+.++.
T Consensus       423 PSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        423 PLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             cHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            222222222233334442   3466777778888888887764

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=97.88  E-value=0.005  Score=59.45  Aligned_cols=293  Identities=16%  Similarity=0.131  Sum_probs=153.2

Q ss_pred             EecCCCeEEEecCCcccccCCCCCHHHHHHHHHHH-Hhccccc-cccc--chH----HHHHHHHHHHhCCCCCceEEEcC
Q 013235           94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHST-VLYL--NHA----IADFAEALASKMPGNLKVVFFTN  165 (447)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l-~~~~~~~-~~~~--~~~----~~elae~L~~~~~~~~~~v~~~~  165 (447)
                      -+.+|-.|||-      ++||-.++++.+..++.. +.-.+.. ....  ...    -..|..+|+.+.+....+|..++
T Consensus        27 ~lp~~viyLdg------nSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~d  100 (407)
T COG3844          27 ALPGGVIYLDG------NSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTD  100 (407)
T ss_pred             cCCCCeEEeec------cccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeC
Confidence            35677789984      467843335555444322 2211100 0001  122    23456666666665666777888


Q ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEEcCCcc-cCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHH
Q 013235          166 SGTEANELAIMMARLYTGCNDIISLRNAYH-GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (447)
Q Consensus       166 sGseA~e~Aik~ar~~t~~~~ii~~~~~yH-G~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (447)
                      |-|--+.-.+-.+...+.++.+|++++.-. -...-+..+.......     ..+..+.           +    .++++
T Consensus       101 tts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~~~~~~-----------~----P~~~~  160 (407)
T COG3844         101 TTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YDLEGVI-----------A----PRALE  160 (407)
T ss_pred             CcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc-----ccceeee-----------C----hHHHH
Confidence            777555555555544444556666655432 1111111111000000     0011111           1    23555


Q ss_pred             HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Ee
Q 013235          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TM  322 (447)
Q Consensus       245 ~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~  322 (447)
                      +.+.    +++|.|++..|+--+|....    +.+|-+++++||++++.|=+++    .|  -...+.++--.|..  |-
T Consensus       161 ~~~~----dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs----aG--avp~~Lh~~gaDfaigcs  226 (407)
T COG3844         161 EAIT----DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS----AG--AVPVDLHAAGADFAIGCS  226 (407)
T ss_pred             Hhhc----cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc----cC--CcceeecccCCCeeeeee
Confidence            5553    58999999999999998887    9999999999999999999987    23  22334444445655  44


Q ss_pred             eccccCC--ccccccccCHHHHHhhcC--------------------CcccccC-CCC-h-HHHHHHHHHHHHHhhhh--
Q 013235          323 AKGIGNG--IPLGAVVTTPEIAEVLTR--------------------RNYFNTF-GGN-P-VCTAAGHAVLKVIQKDK--  375 (447)
Q Consensus       323 sK~lg~G--~pigav~~~~~i~~~l~~--------------------~~~~~T~-~~n-p-~a~aaala~L~~i~~~~--  375 (447)
                      =|-|.+|  -|-+..+.++ ..+...+                    ..+..-| .|+ | +++++...+||+..+-+  
T Consensus       227 yKYLNgGPGapa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~  305 (407)
T COG3844         227 YKYLNGGPGAPAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDIT  305 (407)
T ss_pred             ceeccCCCCCceeEEeccc-cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHH
Confidence            4777654  4444444332 2221111                    0111011 122 3 44445556788765543  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC---------CCCCHHHHHHHHHHHHhCCcee
Q 013235          376 -LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL---------KTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       376 -l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~---------~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                       +.++...+..++.+-++.....+             ++++..+...         ..|   ...++++.|.++||+.
T Consensus       306 ~lR~kSlaLTd~fieLvEa~~~~~-------------~l~l~tPr~~~~rGsqvS~~hp---~~~~V~qaLi~rGVig  367 (407)
T COG3844         306 ELRKKSLALTDYFIELVEARCEYY-------------GLTLVTPRAHEERGSQVSLYHP---HGYQVMQALIDRGVIG  367 (407)
T ss_pred             HHHHhhhHHHHHHHHHHHhccccC-------------CcEEeccchhhhccceeeEecC---cHHHHHHHHHHcCccc
Confidence             44555555566665555554433             2333322210         012   2568999999999975

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.68  E-value=0.0085  Score=58.59  Aligned_cols=287  Identities=19%  Similarity=0.235  Sum_probs=148.8

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      .+..|||+.+-.++..+-   .+-..|+    -....   .| -+..+..|++...+.+  +.+.++-+.-|--|=..-+
T Consensus        44 Sedv~IDLLTDSGTgams---~~qwaam----m~GDE---AYagsrs~~~L~~avkdif--Gfq~~iPthQGRgAE~Il~  111 (471)
T COG3033          44 SEDVFIDLLTDSGTGAMT---DKQWAAM----MRGDE---AYAGSRSYYALADAVKDIF--GFQYTIPTHQGRGAENILI  111 (471)
T ss_pred             ccceEEEeeccCCccccc---HHHHHHH----hccch---hhcccccHHHHHHHHHHhc--CceeeeeccCCccHHHHHH
Confidence            456899998655543222   2222222    22111   12 2456678999999998  4777877776655544333


Q ss_pred             HHHHh---hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235          176 MMARL---YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (447)
Q Consensus       176 k~ar~---~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (447)
                      .+.+.   +-+..++++|.+.|.-.|.+-....+.-.  .+.+..+........|+.+.+  |    ++.|+++|+..+.
T Consensus       112 ~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~--~n~~~~ea~d~~~~~pFKGd~--D----~~kLe~lidevG~  183 (471)
T COG3033         112 PILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATP--RNVYVDEAFDTEVKYPFKGNF--D----LEKLERLIDEVGA  183 (471)
T ss_pred             HHHhhhccccCCccccccccceecchhHHHHhcCCcc--ccccccccccccccCCCCCcc--C----HHHHHHHHHHhCc
Confidence            33322   22346777787777655554443322110  111111111111122333333  2    7889999998777


Q ss_pred             CCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----cc--c-cCCCccccccc--C--CCCCEE
Q 013235          253 GHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----FA--R-TGSHFWGFEAH--G--VVPDIV  320 (447)
Q Consensus       253 ~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----fg--r-~G~~~~~~~~~--g--v~pDiv  320 (447)
                      +++.-|++-- ++..|| .+.+-.-+++++++|++||+.++.|-+...    |-  | -|-+-|.++.-  .  -..|-.
T Consensus       184 ~nvp~I~~tiT~NsagG-QpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~  262 (471)
T COG3033         184 DNVPYIVLTITNNSAGG-QPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGC  262 (471)
T ss_pred             ccCcEEEEEEeccccCC-CcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhh
Confidence            7776655554 444444 566788899999999999999999976421    10  0 11111222110  0  024666


Q ss_pred             Eee-ccccCC-ccccccc-cCHH----HHHhhcCC----cccccCCC----ChHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013235          321 TMA-KGIGNG-IPLGAVV-TTPE----IAEVLTRR----NYFNTFGG----NPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (447)
Q Consensus       321 t~s-K~lg~G-~pigav~-~~~~----i~~~l~~~----~~~~T~~~----np~a~aaala~L~~i~~~~l~~~~~~~g~  385 (447)
                      +|| |-=  | .++|..+ .+.+    +...+...    ..+.||+|    +.-++|++   |..--+.+++++--...+
T Consensus       263 ~mS~KKD--~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvG---L~e~~~~~yl~~Rv~Qv~  337 (471)
T COG3033         263 TMSAKKD--GLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVG---LREGVNFDYLAHRVAQVQ  337 (471)
T ss_pred             eeecccc--ceeccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHH---HHHhcCcHHHHHHHHHHH
Confidence            665 321  2 2444444 4443    33333321    13467765    33344443   433334455544444567


Q ss_pred             HHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          386 YLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      ||-++|.+.  .-+++..+-|.+.++
T Consensus       338 YL~~~l~~~--GVpi~~paGGHavfv  361 (471)
T COG3033         338 YLADGLEEA--GVPIVQPAGGHAVFV  361 (471)
T ss_pred             HHHHHHHhc--CCeeEecCCCceEEe
Confidence            888888776  334445555555443

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=97.36  E-value=0.062  Score=57.63  Aligned_cols=151  Identities=17%  Similarity=0.191  Sum_probs=82.2

Q ss_pred             HHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHH---HHhCC--EEEEeccccCcccc---CC--Cc
Q 013235          240 AKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI---KKAGG--LCIADEVQAGFART---GS--HF  307 (447)
Q Consensus       240 ~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~---~~~g~--llI~DEv~tGfgr~---G~--~~  307 (447)
                      .++|++.|++.  ....+.+|+.---..+.|.+-|    +++|.++|   +++|+  .+-+|-++.|+.+.   ..  .+
T Consensus       262 ~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~  337 (608)
T TIGR03811       262 INELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNF  337 (608)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccc
Confidence            45566555432  1224555555433334466666    99999998   77897  59999999887421   00  00


Q ss_pred             cc-------------c-------------cccCC-CCCEEEee--ccccCCccccccccCH-HHHHhhcCC-ccc-----
Q 013235          308 WG-------------F-------------EAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP-EIAEVLTRR-NYF-----  351 (447)
Q Consensus       308 ~~-------------~-------------~~~gv-~pDivt~s--K~lg~G~pigav~~~~-~i~~~l~~~-~~~-----  351 (447)
                      -.             +             ...++ ..|=||+-  |.+.--++.|+++.+. ++.+.+... .+.     
T Consensus       338 ~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~  417 (608)
T TIGR03811       338 IPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGA  417 (608)
T ss_pred             cccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccc
Confidence            00             0             00123 35666654  6655557788777764 444433221 000     


Q ss_pred             --------ccCCCChH--HHHHHHHHHHHH--hhh---hHHHHHHHHHHHHHHHHHHH
Q 013235          352 --------NTFGGNPV--CTAAGHAVLKVI--QKD---KLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       352 --------~T~~~np~--a~aaala~L~~i--~~~---~l~~~~~~~g~~l~~~L~~l  394 (447)
                              ++..|...  ..++.-.+++.+  -.+   ++.++.-+..+++.+.|++.
T Consensus       418 ~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       418 DIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             cCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    12233322  233444566666  333   35667777788888887774

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK13578 ornithine decarboxylase; Provisional

Probab=97.30  E-value=0.014  Score=63.24  Aligned_cols=165  Identities=13%  Similarity=0.073  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh-hhhccCCC-Ccccccc-CC
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG-TMGATAQS-NWKFNVV-QT  217 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~-~~~~t~~~-~~~~~~~-~~  217 (447)
                      ..+.+..+..++.++. .+..|++|+-|.+|.+++..+.   ++.+.|.++-..|=+... ++.+++.. .|..+.. ..
T Consensus       174 G~i~eAq~~AA~~fgA-d~tyFlvNGTS~gn~a~i~a~~---~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~  249 (720)
T PRK13578        174 GAAKDAQKHAAKVFNA-DKTYFVLNGTSASNKVVTNALL---TPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPF  249 (720)
T ss_pred             hHHHHHHHHHHHHhCC-CceEEEeCChhHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHHHHcCCeEEEeecccccc
Confidence            3445555555555643 3456667777777777776433   334445566666766554 36666532 2222110 01


Q ss_pred             CeEeecCCCCcCCCCCCChHHH-HHHHHHHHHccCCC-------CeEEEEEccccCCCceeeCCCChHHHHHHH-HHHhC
Q 013235          218 GVHHALNPDPYRGVFGADGEMY-AKDVQDLIDFGTSG-------HVAGFLSESIQGVGGIIELAPGYLPAVYKS-IKKAG  288 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~-~~~le~~i~~~~~~-------~~aavi~Epi~~~gG~~~~~~~~l~~l~~l-~~~~g  288 (447)
                      |+..           +.+.+.+ .+.+++.|++..++       -.++||..|..  .|++..    +++|.++ |++++
T Consensus       250 Gi~g-----------~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~  312 (720)
T PRK13578        250 GFIG-----------GIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD  312 (720)
T ss_pred             CCcC-----------CCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC
Confidence            1110           0121111 24466666654222       24567766633  466665    8899998 67778


Q ss_pred             CEEEEeccccCccccCCCcccc--cccCCCCC----EEEee--cccc
Q 013235          289 GLCIADEVQAGFARTGSHFWGF--EAHGVVPD----IVTMA--KGIG  327 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~--~~~gv~pD----ivt~s--K~lg  327 (447)
                       .|++||++.+.-+-.+.+-.+  .....-+|    ++|=|  |-++
T Consensus       313 -~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~  358 (720)
T PRK13578        313 -YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA  358 (720)
T ss_pred             -cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch
Confidence             999999986643222110001  11234567    77766  6665

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=97.26  E-value=0.19  Score=50.61  Aligned_cols=168  Identities=21%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             HHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC
Q 013235          145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN  224 (447)
Q Consensus       145 elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~  224 (447)
                      ++-..++++.+-+.-+.=....+|.+-|+++..-|....+.+-+.....-|=.+...+..-.        ...|+..+..
T Consensus       124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra--------~~~g~~i~~~  195 (450)
T COG0403         124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRA--------EGLGIEIEVV  195 (450)
T ss_pred             HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhc--------ccCceEEEEe
Confidence            34445556653222233344567766666665445433333444555666655544443211        1124544432


Q ss_pred             CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE--eccccCc-c
Q 013235          225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA--DEVQAGF-A  301 (447)
Q Consensus       225 p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~--DEv~tGf-g  301 (447)
                      +.       .|    ++++++. .   .+++++++++-....|+.+..    +++|.+.++++|+++|+  |=+--++ -
T Consensus       196 ~~-------~d----~~~l~~~-~---~~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~LL~  256 (450)
T COG0403         196 DA-------DD----LDDLESA-D---DGDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGLLK  256 (450)
T ss_pred             cc-------ch----hhhhhhc-c---ccCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhccC
Confidence            21       11    4455544 2   348899999865544434443    89999999999998874  4433222 1


Q ss_pred             ccCCCcccccccCCCCCEEE-----eecccc-CCccccccccCHHHHHhhcCC
Q 013235          302 RTGSHFWGFEAHGVVPDIVT-----MAKGIG-NGIPLGAVVTTPEIAEVLTRR  348 (447)
Q Consensus       302 r~G~~~~~~~~~gv~pDivt-----~sK~lg-~G~pigav~~~~~i~~~l~~~  348 (447)
                      .-| +      +  -.||++     ||=.++ ||--.|+..++++....+..+
T Consensus       257 pPG-e------~--GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGR  300 (450)
T COG0403         257 PPG-E------F--GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGR  300 (450)
T ss_pred             Ccc-c------c--CCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCc
Confidence            112 1      1  238875     777777 666678888888888776543

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=97.16  E-value=0.02  Score=58.44  Aligned_cols=210  Identities=19%  Similarity=0.271  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHhCCCCCceE--EEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe
Q 013235          142 AIADFAEALASKMPGNLKVV--FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v--~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~  219 (447)
                      .+-|+-..++++.  +++.+  =+...++.+-|+++...|...++.+.+....+-|..+...+.....        ..++
T Consensus       111 ~lfe~Qs~i~eLT--GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~--------~~g~  180 (429)
T PF02347_consen  111 ALFEYQSMICELT--GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAA--------PLGI  180 (429)
T ss_dssp             HHHHHHHHHHHHH--TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCC--------HCCE
T ss_pred             HHHHHHHHHHHhh--CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhh--------hCCe
Confidence            4457888888887  45632  4456677677765544454333323444556667666554432211        1245


Q ss_pred             EeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc---
Q 013235          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV---  296 (447)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv---  296 (447)
                      ..+..|....+   .+     +          .+++|+|++.-.+ .-|.+..    +++|.++++++|+++|+ -+   
T Consensus       181 ~iv~~~~~~~~---~~-----d----------~~~~a~v~vq~Pn-~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~  236 (429)
T PF02347_consen  181 EIVEVPLDEDG---TT-----D----------DDDTAAVMVQNPN-TFGVFED----IKEIADIAHAAGALVIV-GADPN  236 (429)
T ss_dssp             EEEEE-BBTTC---SB----------------STTEEEEEEESS--TTSB--T----HHHHHHHHHHTT-EEEE-CGGCC
T ss_pred             EEEEecccccC---Cc-----c----------ccCeEEEEeecCC-CCceEee----HHHHHHHHHHcCCEEEE-ecCHH
Confidence            54443321111   00     1          3488999887433 3456554    99999999999999986 22   


Q ss_pred             -ccCccccCCCcccccccCCCCCEEE-eecccc-----CCccccccccCHHHHHhhcCCc--------------------
Q 013235          297 -QAGFARTGSHFWGFEAHGVVPDIVT-MAKGIG-----NGIPLGAVVTTPEIAEVLTRRN--------------------  349 (447)
Q Consensus       297 -~tGfgr~G~~~~~~~~~gv~pDivt-~sK~lg-----~G~pigav~~~~~i~~~l~~~~--------------------  349 (447)
                       .+++-+-|       .+|  .||++ .+|.+|     ||--.|++.++++++..+..+.                    
T Consensus       237 aL~~l~~Pg-------e~G--ADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtR  307 (429)
T PF02347_consen  237 ALGGLKSPG-------EYG--ADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTR  307 (429)
T ss_dssp             GCCTC--GG-------GGT---SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGG
T ss_pred             HHhCcCChh-------hcC--ccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccc
Confidence             11222222       233  38885 456665     3445788888888877765431                    


Q ss_pred             --c------cccCCCChHHHH-HHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 013235          350 --Y------FNTFGGNPVCTA-AGHAVLKVIQKDK---LQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       350 --~------~~T~~~np~a~a-aala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l  394 (447)
                        |      .+-++.|..-+| ++..-+..+=.++   +.+++..+..|+.++|.++
T Consensus       308 EQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  308 EQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             TCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             cccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              1      122333433333 2333344343444   4566777788888888775

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.14  E-value=0.1  Score=58.32  Aligned_cols=250  Identities=14%  Similarity=0.121  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEe
Q 013235          143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHH  221 (447)
Q Consensus       143 ~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~-~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~  221 (447)
                      +-++-..++++++-+..++-+...+|.+-|++++..|...+ +++|++. .+-|=.+...+...        ....|+..
T Consensus       111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~-~~~hP~~~~v~~t~--------a~~~g~~v  181 (939)
T TIGR00461       111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVA-KDLHPQTKSVLHTR--------AKPFGIEV  181 (939)
T ss_pred             HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEEC-CCCCcchHHHHHHH--------HHhcCcEE
Confidence            45677778888743333446677888888855554333222 2565554 44443332222110        01124433


Q ss_pred             ecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc
Q 013235          222 ALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA  301 (447)
Q Consensus       222 ~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg  301 (447)
                      +..          |    .++|++.+      +++++++. .++..|.+..    +++|.++++++|+++|++--...++
T Consensus       182 ~~~----------~----~~~l~~~~------~~~~v~~q-~Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~  236 (939)
T TIGR00461       182 IVV----------D----CSDIKKAV------DVFGCLLQ-YPATDGSILD----YKQLIDALHSHKSLVSVAADLMALT  236 (939)
T ss_pred             EEE----------c----HHHHhhcC------CEEEEEEE-CCCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhC
Confidence            321          1    23344332      45666553 3445677764    8999999999999999865443221


Q ss_pred             ccCCCcccccccCCCCCEEE-eecccc-----CCccccccccCHHHHHhhcCCccc---------------cc-------
Q 013235          302 RTGSHFWGFEAHGVVPDIVT-MAKGIG-----NGIPLGAVVTTPEIAEVLTRRNYF---------------NT-------  353 (447)
Q Consensus       302 r~G~~~~~~~~~gv~pDivt-~sK~lg-----~G~pigav~~~~~i~~~l~~~~~~---------------~T-------  353 (447)
                      -.-    .-..+|  .||++ .+|.+|     ||--.|++.+++++...+..+..+               .|       
T Consensus       237 ll~----~Pge~G--aDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrR  310 (939)
T TIGR00461       237 LLT----PPGHYG--ADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRR  310 (939)
T ss_pred             CcC----CHHHcC--CcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccc
Confidence            110    011223  38874 235444     343377888888888776542110               00       


Q ss_pred             -CCCChHHHHHHHH----H--HHHHhhhhH---HHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCC
Q 013235          354 -FGGNPVCTAAGHA----V--LKVIQKDKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT  423 (447)
Q Consensus       354 -~~~np~a~aaala----~--L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~  423 (447)
                       -+.+.++.+.++-    +  +..+-.+++   .+++..+..+|.++|.+.  .+..+.+    -.|--+.+.-+.    
T Consensus       311 ekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~--G~~~~~~----~fF~~~~v~~~~----  380 (939)
T TIGR00461       311 DKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND--PHELINK----TWFDTLTVKVGN----  380 (939)
T ss_pred             cccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccCC----CccceEEEEeCC----
Confidence             0111222222221    1  333434433   456777778888888773  3333222    122122221110    


Q ss_pred             CCHHHHHHHHHHHHhCCceeec
Q 013235          424 PAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       424 p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                         ..+.++.+.+.++||.++.
T Consensus       381 ---~~~~~i~~~~~~~gi~l~~  399 (939)
T TIGR00461       381 ---GISSELLKAAEEFNINLRA  399 (939)
T ss_pred             ---CCHHHHHHHHHHCCCeeee
Confidence               0146789999999998763

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=97.10  E-value=0.039  Score=54.53  Aligned_cols=207  Identities=17%  Similarity=0.162  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHHhccc---ccc-cccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235          116 CHPYVVDSIVNQIKRIQH---STV-LYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII  188 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~---~~~-~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii  188 (447)
                      |+.+|.+|.++.=-.-.|   ++. .|.+..+..|.+-.++.+..  +..++   .-|||.|+..|+.-...  +.++++
T Consensus        25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfga--E~ALVRpq~vSGTHAi~~~Lfg~Lr--pGD~ll  100 (403)
T PF06838_consen   25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGA--EDALVRPQFVSGTHAIALALFGVLR--PGDELL  100 (403)
T ss_dssp             HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT---SEEEEETTS-SHHHHHHHHHHHH----TT-EEE
T ss_pred             HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCc--hhhhhcccccchHHHHHHHHHhcCC--CCCeEE
Confidence            455677776653111112   222 24466778888889999854  44444   46999999999975443  678888


Q ss_pred             EEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCc
Q 013235          189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG  268 (447)
Q Consensus       189 ~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG  268 (447)
                      +..|.=.=.....+.+.+...  -.....|+..-..|....+.  -|    .+.+++.+..    ++..|.+   |=+.|
T Consensus       101 ~~tG~PYDTL~~VIG~~g~~~--GSL~e~Gi~Y~~v~L~~dg~--~D----~~~i~~~~~~----~tk~v~I---QRSrG  165 (403)
T PF06838_consen  101 SITGKPYDTLEEVIGIRGNGP--GSLKEFGIKYREVPLTEDGT--ID----WEAIKKALKP----NTKMVLI---QRSRG  165 (403)
T ss_dssp             ESSSS--CCHHHHHTSSSSSS--SSTGGGT-EEEE--B-TTSS--B-----HHHHHHHHHT----TEEEEEE---E-S-T
T ss_pred             EcCCCchhhHHHHhCCCCCCC--CChHHhCceeEEEeecCCCC--cC----HHHHHHhhcc----CceEEEE---ecCCC
Confidence            766543333333444443211  11111344332222221111  12    5667777662    4555553   54445


Q ss_pred             eeeC---CCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCc-c-ccccccCH
Q 013235          269 IIEL---APGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGI-P-LGAVVTTP  339 (447)
Q Consensus       269 ~~~~---~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~-p-igav~~~~  339 (447)
                      .-.-   +-+-++++.+++++.  ++++++|..|..|--+-      |--.+-.|++.  +=|-.|||+ | =||+++++
T Consensus       166 Ys~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~------EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~  239 (403)
T PF06838_consen  166 YSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ------EPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRK  239 (403)
T ss_dssp             TSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-------GGGGT-SEEEEETTSGGGTTT-SS-EEEEESH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc------CccccchhheeccceeCCCCCccCcCCEEechH
Confidence            4332   223456666666664  78999999997774322      33445569985  669999996 5 47788999


Q ss_pred             HHHHhhcC
Q 013235          340 EIAEVLTR  347 (447)
Q Consensus       340 ~i~~~l~~  347 (447)
                      ++++....
T Consensus       240 ~lVe~~a~  247 (403)
T PF06838_consen  240 DLVERAAY  247 (403)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987654

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=96.89  E-value=0.076  Score=57.70  Aligned_cols=225  Identities=12%  Similarity=0.142  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc-CCC
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV-QTG  218 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~-~~g  218 (447)
                      ..+.+..+..++.++. .+..|++|+-|.+|.+++..+.   ++.+.|.++...|=+...++.+++.. .|..+.. ..|
T Consensus       195 G~i~eAe~~aA~~fgA-d~tyfvvNGTS~~n~av~~a~~---~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~G  270 (713)
T PRK15399        195 GPHLEAEEYIARTFGA-EQSYIVTNGTSTSNKIVGMYAA---PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALG  270 (713)
T ss_pred             hHHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccC
Confidence            3455555556666643 3445556666777877776442   34445556666677777777776643 2222110 011


Q ss_pred             eEeecCCCCcCCCCCCChHHH-HHHHHHHHHccCCCC---eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE-EE
Q 013235          219 VHHALNPDPYRGVFGADGEMY-AKDVQDLIDFGTSGH---VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC-IA  293 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~-~~~le~~i~~~~~~~---~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll-I~  293 (447)
                      +..           +.+...+ .+.+++.+++. ++.   .++||..|-.  .|++..    ++.|.++|   |+.+ ++
T Consensus       271 i~g-----------~I~~~~~~~e~I~~~i~~~-p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilv  329 (713)
T PRK15399        271 ILG-----------GIPRREFTRDSIEEKVAAT-TQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHF  329 (713)
T ss_pred             CcC-----------CCChhhccHHHHHHHHHhC-CCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEE
Confidence            111           0111100 35677777654 222   4677777732  466665    77777777   7777 59


Q ss_pred             eccccCccccCCCc---ccccccCCCCCEE---Eee--ccccCCccccccc-cC-----HHHHHhhcCCcccccCCCChH
Q 013235          294 DEVQAGFARTGSHF---WGFEAHGVVPDIV---TMA--KGIGNGIPLGAVV-TT-----PEIAEVLTRRNYFNTFGGNPV  359 (447)
Q Consensus       294 DEv~tGfgr~G~~~---~~~~~~gv~pDiv---t~s--K~lg~G~pigav~-~~-----~~i~~~l~~~~~~~T~~~np~  359 (447)
                      ||++.+.-+-.+.+   .+.+ .+-.+|++   |-|  |-+++ +--++.+ .+     +.+-+.+.  .|.+| +-+=+
T Consensus       330 DEAhgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~~--m~~ST-SPsY~  404 (713)
T PRK15399        330 DSAWVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAFM--MHTST-SPSYP  404 (713)
T ss_pred             eccchhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHHH--HHcCC-CcHHH
Confidence            99986643222111   1111 11146887   433  76652 3222222 22     22222221  12222 22211


Q ss_pred             HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHH
Q 013235          360 CTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       360 a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      -+|..-.+-++++.   +.+.+.+.+.+..+|+.|.++.
T Consensus       405 LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~  443 (713)
T PRK15399        405 IVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLR  443 (713)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            12222223333432   3577788888888999888764

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=96.84  E-value=0.1  Score=54.84  Aligned_cols=268  Identities=18%  Similarity=0.285  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEE-cCCHHHHHHHHHHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          141 HAIADFAEALASKMPGNLKVVFF-TNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~-~~sGseA~e~Aik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ....+|.+.|+++.  +.+.+.| -|||.+.-.+-++..|.|-     +.+.|-..--+-||.-..+....+        
T Consensus       582 ~lf~~Le~~Lc~iT--G~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Mag--------  651 (1001)
T KOG2040|consen  582 QLFTELEKDLCEIT--GFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAG--------  651 (1001)
T ss_pred             HHHHHHHHHhheee--cccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcC--------
Confidence            34567777888776  4555444 6899988888888888873     234455556788998877665543        


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                          ...++..-...+.  .|    +.+|++..+++ .++.||+.+. .++.-|+..+   -+++++++.++||.-+.+|
T Consensus       652 ----mkvvpV~~~~~G~--id----~~dLk~kaekh-~~~Laa~MvT-YPST~GvfE~---~i~d~cd~iHehGGQVYlD  716 (1001)
T KOG2040|consen  652 ----MKVVPVGCDANGN--ID----MVDLKAKAEKH-KDNLAALMVT-YPSTHGVFEE---GIDDICDIIHEHGGQVYLD  716 (1001)
T ss_pred             ----CEEEEeeccCCCC--cc----HHHHHHHHHHh-hhhhheeEEe-cccccccccc---cHHHHHHHHHhcCCEEEec
Confidence                2233221111111  23    56676666554 4578888775 3344455442   3889999999999999999


Q ss_pred             cc----ccCccccCCCccc-ccccCCCCCEEEeeccccC-CccccccccCHHHHHhhcCCcc-----------cccCCCC
Q 013235          295 EV----QAGFARTGSHFWG-FEAHGVVPDIVTMAKGIGN-GIPLGAVVTTPEIAEVLTRRNY-----------FNTFGGN  357 (447)
Q Consensus       295 Ev----~tGfgr~G~~~~~-~~~~gv~pDivt~sK~lg~-G~pigav~~~~~i~~~l~~~~~-----------~~T~~~n  357 (447)
                      -+    |.|+.|-| .+.+ ..|.++.-   ||.=.-|| |--+|-+...+.++..+.....           ..+-+..
T Consensus       717 GANMNAqVGlc~pG-d~GaDV~HLNLHK---TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaa  792 (1001)
T KOG2040|consen  717 GANMNAQVGLCRPG-DIGADVCHLNLHK---TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAA  792 (1001)
T ss_pred             CCCccceecccCCc-cccccceeecccc---eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceecc
Confidence            74    88888877 2221 12333221   45545554 3456667777777766654211           1222222


Q ss_pred             hHHH----HHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeC-CCCCCCCHHHH
Q 013235          358 PVCT----AAGHAVLKVIQKDKLQNN---AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD-RQLKTPAKAET  429 (447)
Q Consensus       358 p~a~----aaala~L~~i~~~~l~~~---~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~-~~~~~p~~~~~  429 (447)
                      |.+.    ....+-++++-..++.+.   +--+..|+.++|+.   .|.++.  ++.--.++-||.-| +..|.....++
T Consensus       793 P~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~---hYkil~--~~~~~~vaHEFIlD~r~fK~~agiea  867 (1001)
T KOG2040|consen  793 PWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES---HYKILF--RGENGLVAHEFILDLRPFKKTAGIEA  867 (1001)
T ss_pred             CCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh---ccceeE--ecCCcceeeeeeeechhhccccCCcH
Confidence            3333    233456676655554322   22345677776655   344432  33323666676433 33333333345


Q ss_pred             HHHHHHHHhCCce
Q 013235          430 LYIMDKMKGICAL  442 (447)
Q Consensus       430 ~~~~~~l~~~Gvl  442 (447)
                      ..+++.|.+-|+.
T Consensus       868 vDvAKRL~DYgFH  880 (1001)
T KOG2040|consen  868 VDVAKRLMDYGFH  880 (1001)
T ss_pred             HHHHHHHHhccCC
Confidence            6788888888864

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=96.79  E-value=0.18  Score=52.89  Aligned_cols=164  Identities=15%  Similarity=0.098  Sum_probs=89.3

Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~  219 (447)
                      ...+.|..|..++.++. ....|.+|+-|-||...+....   +..+.|.++-..|=+...++-+++...         +
T Consensus        69 ~G~i~eAqe~aA~~fgA-d~tyFvvNGTS~ank~vi~a~~---~~GD~VLvdRN~HKSi~~glilaGa~P---------v  135 (557)
T COG1982          69 EGPIKEAQELAARVFGA-DHTYFVVNGTSTANKAVINAVL---TPGDKVLVDRNCHKSIHHGLILAGATP---------V  135 (557)
T ss_pred             CccHHHHHHHHHHHhCC-CceEEEECCccHHHHHHHHhhc---CCCCEEEecCCccHHHHHHHHHcCCce---------E
Confidence            33455555555566643 3456667777778877776332   344455566666766665566655321         2


Q ss_pred             EeecCCCC-cCCCCCCChHHHHHHHHHHHHccCCCC-eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235          220 HHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (447)
Q Consensus       220 ~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~~-~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~  297 (447)
                      ...+..++ +.-.-+.+    .+.+++.+..+ ++. ..++|..|-.  .|++..    +++|.+.+.+.++.+..||.+
T Consensus       136 yl~p~~np~~gi~ggI~----~~~~~~~l~~~-~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah  204 (557)
T COG1982         136 YLEPSRNPLYGIIGGIP----LETFKEALLAH-PDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAH  204 (557)
T ss_pred             EecCCCCccccccCCCC----HHHHHHHHHhC-hhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcC
Confidence            22222222 11111223    34555444332 223 6788887743  466665    899999999999999999987


Q ss_pred             cCccccCCCcccccccCCCCCEEEee--ccccC
Q 013235          298 AGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN  328 (447)
Q Consensus       298 tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~  328 (447)
                       |+-+.-..+..-....---|++|-|  |-+++
T Consensus       205 -~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~a  236 (557)
T COG1982         205 -PAHFDFSPMLPESALNGGADFVTQSTHKLLAA  236 (557)
T ss_pred             -cccccccccCcchhhhcCceEEEechhhhhhh
Confidence             3322110111111112334788877  55553

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=96.69  E-value=0.069  Score=58.06  Aligned_cols=227  Identities=12%  Similarity=0.124  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc-CCC
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV-QTG  218 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~-~~g  218 (447)
                      ..+.+..+..++.++. .+..|++|+-|.+|.+++..+.   ++.+.|.++...|=+...++.+++.. .|..+.. ..|
T Consensus       195 G~i~eAe~~AA~~fgA-d~tyfvvNGTS~~n~av~~a~~---~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~G  270 (714)
T PRK15400        195 GPHKEAEEYIARVFNA-DRSYMVTNGTSTANKIVGMYSA---PAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYG  270 (714)
T ss_pred             hHHHHHHHHHHHHhCC-CcEEEEeCchHHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccC
Confidence            3445555555566643 3445556666777777666432   34455556667777777777777643 2221110 011


Q ss_pred             eEeecCCCCcCCCCCCChHHH-HHHHHHHHHccCC-C-CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          219 VHHALNPDPYRGVFGADGEMY-AKDVQDLIDFGTS-G-HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~-~~~le~~i~~~~~-~-~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      +..           +.+...+ .+.+++.+++... . ..++||..|..  .|++..    ++.|.++|+.++  +++||
T Consensus       271 i~g-----------~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDE  331 (714)
T PRK15400        271 ILG-----------GIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDS  331 (714)
T ss_pred             Ccc-----------CCCccccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEc
Confidence            110           0111000 3567777765421 1 12578877732  466665    899999999887  68999


Q ss_pred             cccCccccCCCc---ccccccCCCC-C--EEEee--ccccCCccccccc-c----C-HHHHHhhcCCcccccCCCChHHH
Q 013235          296 VQAGFARTGSHF---WGFEAHGVVP-D--IVTMA--KGIGNGIPLGAVV-T----T-PEIAEVLTRRNYFNTFGGNPVCT  361 (447)
Q Consensus       296 v~tGfgr~G~~~---~~~~~~gv~p-D--ivt~s--K~lg~G~pigav~-~----~-~~i~~~l~~~~~~~T~~~np~a~  361 (447)
                      ++.+.-+-.+.+   .+.+ .|-.+ |  ++|=|  |-+++ +--++.+ .    . +.+.+.+.  .|.+| +-+=+-+
T Consensus       332 Awgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~--m~~ST-SPsY~l~  406 (714)
T PRK15400        332 AWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM--MHTTT-SPHYGIV  406 (714)
T ss_pred             cchhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH--HHcCC-CcHHHHH
Confidence            987643222111   1111 12111 4  66655  76652 2222221 1    1 22222221  12222 2221112


Q ss_pred             HHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHH
Q 013235          362 AAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       362 aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      |..-.+-.+++.   +.+.+.+.+.+..+|+.|.++.
T Consensus       407 ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~  443 (714)
T PRK15400        407 ASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR  443 (714)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence            222223333432   3567788888888998888764

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=96.34  E-value=0.26  Score=48.31  Aligned_cols=226  Identities=20%  Similarity=0.200  Sum_probs=113.8

Q ss_pred             CeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCC---
Q 013235           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGN---  157 (447)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~---  157 (447)
                      |.-+-=|-|+| .|.+|+-|+              -|.|.+|-++-+. .. ...-| +-....|+.+.-+++.-++   
T Consensus        52 ~~KiNLgvGaY-Rdd~gKp~v--------------L~~VrkAE~ql~~-~~-ldKEYlpI~Gl~eF~k~sakLa~G~~s~  114 (427)
T KOG1411|consen   52 PKKINLGVGAY-RDDNGKPYV--------------LPSVRKAEQQLAS-LS-LDKEYLPITGLAEFNKLSAKLALGDNSP  114 (427)
T ss_pred             cceeeecccce-ecCCCCeee--------------eHHHHHHHHHHhh-hc-ccchhccccchHHHHHHHHHHhhcCCch
Confidence            45556678887 688888775              1667776544333 11 01112 2233444444444433111   


Q ss_pred             ---CceEEE--cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          158 ---LKVVFF--TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       158 ---~~~v~~--~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                         .+++.+  +=||+-|.-.+-.....+-+..+|.+.++++-...         ..++    ..|+..-.+.+......
T Consensus       115 ~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~---------~if~----~ag~~~~~yrYyd~~t~  181 (427)
T KOG1411|consen  115 VIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK---------NIFK----DAGLPVKFYRYYDPKTR  181 (427)
T ss_pred             hhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccC---------cccc----ccCcceeeeeecccccc
Confidence               223333  44777666665554433445677888888772111         0111    11221111111111111


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcc----
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW----  308 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~----  308 (447)
                      +.|.+..++++.+.     ++.-..++-..-.+++|+- |..+-+++|.++.++.+.+-++|=+|.||. +|+ ++    
T Consensus       182 gld~~g~ledl~~~-----p~gs~ilLhaCaHNPTGvD-Pt~eqw~ki~~~~~~k~~~pffDmAYQGfa-SG~-~d~DA~  253 (427)
T KOG1411|consen  182 GLDFKGMLEDLGEA-----PEGSIILLHACAHNPTGVD-PTKEQWEKISDLIKEKNLLPFFDMAYQGFA-SGD-LDKDAQ  253 (427)
T ss_pred             ccchHHHHHHHhcC-----CCCcEEEeehhhcCCCCCC-ccHHHHHHHHHHhhhccccchhhhhhcccc-cCC-chhhHH
Confidence            22333333443322     3222233333466667754 588899999999999999999999999994 552 32    


Q ss_pred             ccccc-CCCCCEE---EeeccccC-Cccccc---cccCHHHHHhh
Q 013235          309 GFEAH-GVVPDIV---TMAKGIGN-GIPLGA---VVTTPEIAEVL  345 (447)
Q Consensus       309 ~~~~~-gv~pDiv---t~sK~lg~-G~piga---v~~~~~i~~~l  345 (447)
                      +..++ ..--++.   .++|-||= |=++|+   |+-+++.+..+
T Consensus       254 avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV  298 (427)
T KOG1411|consen  254 AVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRV  298 (427)
T ss_pred             HHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHH
Confidence            11111 1112333   48888882 445555   34445544433

>PRK12566 glycine dehydrogenase; Provisional

Probab=95.32  E-value=2.9  Score=47.04  Aligned_cols=159  Identities=17%  Similarity=0.227  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhCCCCCc--eEEEcCCHHHHHHHHHHHHHhhcC--CCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          143 IADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTG--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       143 ~~elae~L~~~~~~~~~--~v~~~~sGseA~e~Aik~ar~~t~--~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      +-++-..++++.  +++  +.-+...+|.+-| |+.|++.+++  +++++ ...+-|=.+...+..     |   ....|
T Consensus       126 l~e~Qtmi~~Lt--Gm~vaNASl~D~atA~aE-A~~ma~~~~~~k~~~~~-v~~~~hP~~~~v~~t-----~---~~~~g  193 (954)
T PRK12566        126 LLNFQQMTIDLT--GLDLANASLLDEATAAAE-AMALAKRVAKSKSNRFF-VDEHCHPQTLSVLRT-----R---AEGFG  193 (954)
T ss_pred             HHHHHHHHHHHh--CchhhhhhhccchhHHHH-HHHHHHHHhhcCCCEEE-ECCCCCHHHHHHHHH-----h---hhcCC
Confidence            346666777776  344  2234456666666 4444554544  45554 455555222222111     0   01124


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE--ecc
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA--DEV  296 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~--DEv  296 (447)
                      +..+.                 +++++.+    .++++++++.- ++.-|.+..    +++|.++++++|+++|+  |=.
T Consensus       194 ~~i~~-----------------~~~~~~~----~~~~~~v~vq~-P~~~G~i~d----~~~i~~~~h~~gal~~~~~d~l  247 (954)
T PRK12566        194 FELVV-----------------DAVDNLA----AHAVFGALLQY-PDTHGEIRD----LRPLIDQLHGQQALACVAADLL  247 (954)
T ss_pred             cEEEE-----------------cchhhcC----CCCEEEEEEEC-CCCceEEcc----HHHHHHHHHHcCCEEEEEeCHH
Confidence            43332                 2333332    23688888742 234466644    89999999999999773  221


Q ss_pred             -ccCccccCCCcccccccCCCCCEEE-----eecccc-CCccccccccCHHHHHhhcCC
Q 013235          297 -QAGFARTGSHFWGFEAHGVVPDIVT-----MAKGIG-NGIPLGAVVTTPEIAEVLTRR  348 (447)
Q Consensus       297 -~tGfgr~G~~~~~~~~~gv~pDivt-----~sK~lg-~G~pigav~~~~~i~~~l~~~  348 (447)
                       .+.+-.-|       .+|  .||++     ||=.++ ||--.|++.+++++...+..+
T Consensus       248 aL~ll~~Pg-------e~G--ADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGR  297 (954)
T PRK12566        248 SLLVLTPPG-------ELG--ADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGR  297 (954)
T ss_pred             HHhCCCChh-------hcC--CcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCC
Confidence             11121122       122  38874     444444 444478888888888777653

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=94.53  E-value=0.91  Score=45.65  Aligned_cols=189  Identities=13%  Similarity=0.145  Sum_probs=93.0

Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc---ccCCC
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE---AHGVV  316 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~---~~gv~  316 (447)
                      .+.+|+.+++.+++.+.+|+.- ..+..|..   ++-+++|.++|++||++.|+--+|+ .--+- -+--.+   ..|..
T Consensus       141 ~~~ie~~i~~~G~~~iLcvltt-tscfapr~---~D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~-~~~~i~~a~~~GRv  214 (389)
T PF05889_consen  141 LEAIEAKIEELGADNILCVLTT-TSCFAPRL---PDDIEEIAKICKEYDIPHLVNNAYG-VQSSK-CMHLIQQAWRVGRV  214 (389)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEEE-SSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HH-HHHHHHHHHHHSTC
T ss_pred             HHHHHHHHHHhCCCCeEEEEEe-cCccCCCC---CccHHHHHHHHHHcCCceEEccchh-hhHHH-HHHHHHHHHhcCCc
Confidence            4667777776555556565544 33333332   3458999999999999999999984 50000 000000   12222


Q ss_pred             CCEE-EeeccccCCccc-cccc--cCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q 013235          317 PDIV-TMAKGIGNGIPL-GAVV--TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKE  389 (447)
Q Consensus       317 pDiv-t~sK~lg~G~pi-gav~--~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~  389 (447)
                      |-++ .+.|-+=  .|+ |+++  ..+..++.+... +..--+..|.  .-...+|..+=.   ..++....+.-.++++
T Consensus       215 da~vqS~dkNF~--VPvGgai~As~~~~~i~~vs~~-YpGRas~sp~--ld~~itLl~LG~~g~~~ll~~r~~~f~~l~e  289 (389)
T PF05889_consen  215 DAFVQSTDKNFM--VPVGGAIMASFDPSGILAVSKE-YPGRASASPS--LDLFITLLSLGCTGYGALLKERKASFPYLKE  289 (389)
T ss_dssp             SEEEEEHHHHHC--EESSHEEEEESSHHHHHHHHHT-SHSHBTSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeecCCCEE--ecCCCcEEEecCHHHHHHHHHH-hhhhhhcccc--hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            2211 2333331  011 1122  234555544421 1110011111  112333333322   2355666677789999


Q ss_pred             HHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235          390 RLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       390 ~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                      +|+++.++++ .+.+.+..-..+++++..-.....   .....+...|+.|||-
T Consensus       290 rl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~---k~~~~lgs~Lf~R~Vs  340 (389)
T PF05889_consen  290 RLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQ---KDGTFLGSMLFKRGVS  340 (389)
T ss_dssp             HHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCS---SHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhhhhhcCCCCCCeeEEEECccchhhcc---chhhhHHHHHHhCCcc
Confidence            9999999986 355666666777777742111111   1345678889999873

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=94.50  E-value=3.8  Score=39.79  Aligned_cols=296  Identities=17%  Similarity=0.124  Sum_probs=151.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHhc------cccccc----ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH-
Q 013235          111 VCCGHCHPYVVDSIVNQIKRI------QHSTVL----YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-  179 (447)
Q Consensus       111 ~~lGh~~p~v~~A~~~~l~~~------~~~~~~----~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar-  179 (447)
                      ++||.-+....+.+.+.+++-      +|...-    -.++.+.   ..++...+...+.|-++||=+--+. .+.+.. 
T Consensus        74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il---~l~~~iVGA~e~EvavmNsLTvNlh-~Ll~sFy  149 (465)
T KOG3846|consen   74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPIL---PLLAPIVGAQENEVAVMNSLTVNLH-SLLISFY  149 (465)
T ss_pred             cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhh---hhhhhhccCCchhhhhHhhhhhHHH-HHHHHhc
Confidence            467877777777777777652      232211    1122333   3444555555667778887764333 333322 


Q ss_pred             hhc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHH--HHHHHHHHHccCCCCeE
Q 013235          180 LYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY--AKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       180 ~~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~--~~~le~~i~~~~~~~~a  256 (447)
                      .-| .|.+|+.-.++|.......-+-.....  .. +......+. |.        ..+.+  .+++.+.|++. .+.+|
T Consensus       150 KPTekR~KILlE~kaFPSDhYAiesQ~~lhG--~~-~e~sm~~ie-PR--------EGEetlRteDILd~IEkn-gDeiA  216 (465)
T KOG3846|consen  150 KPTEKRFKILLEKKAFPSDHYAIESQCKLHG--IS-PENSMIQIE-PR--------EGEETLRTEDILDTIEKN-GDEIA  216 (465)
T ss_pred             CCcchhhhhhhccCCCCchHHHHHhhhhhcC--CC-hHHheEEec-cc--------ccccchhHHHHHHHHHhc-CCeEE
Confidence            112 467888778887654443322111000  00 000111111 11        11111  35566666654 56899


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCc-ccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGI-PLG  333 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~-pig  333 (447)
                      .|++..||--+|-.-.    +.+|-..-+..|+++=+|=++. +|..-  +. ...||+  |..|..  |-+..|- -||
T Consensus       217 ~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNVp--L~-LHdWgV--DFACWCSYKYlnaGaGgIg  286 (465)
T KOG3846|consen  217 LVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNVP--LQ-LHDWGV--DFACWCSYKYLNAGAGGIG  286 (465)
T ss_pred             EEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCCc--eE-EeecCC--ceEEEeeecccccCCCccc
Confidence            9999999988877654    5566655566689999998885 55332  11 123444  777632  5543232 234


Q ss_pred             ccccCHHHH----HhhcC--------------------CcccccCCCChHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHH
Q 013235          334 AVVTTPEIA----EVLTR--------------------RNYFNTFGGNPVCTAA-GHAVLKVIQKDKLQNNAHVVGSYLK  388 (447)
Q Consensus       334 av~~~~~i~----~~l~~--------------------~~~~~T~~~np~a~aa-ala~L~~i~~~~l~~~~~~~g~~l~  388 (447)
                      .....++..    ..+..                    +..+.-.+..|+-..+ .++.|++...-+ .++++.+.-+|.
T Consensus       287 GlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRkrS~lLT  365 (465)
T KOG3846|consen  287 GLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRKRSLLLT  365 (465)
T ss_pred             eeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhhhhhhHH
Confidence            433332221    11110                    0011222334444444 345677665433 566666666666


Q ss_pred             HHHHHHHHhc-C-------------Ce--eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          389 ERLTALKDKY-G-------------II--GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       389 ~~L~~l~~~~-~-------------~i--~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .-|+.|.+.. +             ++  ..+.-+|.-+.+.|..+          ...++++|.+|||+.-
T Consensus       366 gYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp----------~~~vfqeL~krGv~~D  427 (465)
T KOG3846|consen  366 GYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP----------TPKVFQELHKRGVIGD  427 (465)
T ss_pred             hHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC----------chHHHHHHHHcCeecc
Confidence            6565554321 1             11  23344466666666433          2568999999999874

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=94.16  E-value=0.63  Score=45.08  Aligned_cols=81  Identities=22%  Similarity=0.321  Sum_probs=54.1

Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC---Cccccccc---CCCCCEE--Eeecccc-CCcccc
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGFEAH---GVVPDIV--TMAKGIG-NGIPLG  333 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~---~~~~~~~~---gv~pDiv--t~sK~lg-~G~pig  333 (447)
                      -.+++|+- |+.+-++.|.+..++...+..+|-+|.||. +|.   .-|+..++   | .+=+|  .|+|-+| -|=++|
T Consensus       187 AhNPTGmD-PT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~~~DawAiR~fV~~g-~e~fv~QSFaKNfGlYneRvG  263 (410)
T KOG1412|consen  187 AHNPTGMD-PTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDLDADAWAIRYFVEQG-FELFVCQSFAKNFGLYNERVG  263 (410)
T ss_pred             ccCCCCCC-CCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCccccHHHHHHHHhcC-CeEEEEhhhhhhccccccccc
Confidence            57777865 478889999999999999999999999995 442   34555432   2 22334  3889887 133433


Q ss_pred             ---ccccCHHHHHhhc
Q 013235          334 ---AVVTTPEIAEVLT  346 (447)
Q Consensus       334 ---av~~~~~i~~~l~  346 (447)
                         .|+-++.++..+.
T Consensus       264 nltvv~~n~a~i~~v~  279 (410)
T KOG1412|consen  264 NLTVVVNNPAVIAGVK  279 (410)
T ss_pred             ceEEEecChhHHHHHH
Confidence               3445566555443

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=93.76  E-value=3.8  Score=40.78  Aligned_cols=48  Identities=29%  Similarity=0.306  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEE--eeccccC
Q 013235          277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MAKGIGN  328 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~  328 (447)
                      .++++++|++.|++|++|=++. |+--.|---.-||+    -||||  .=|+|-|
T Consensus       206 YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~DiVTTTTHKsLRG  256 (477)
T KOG2467|consen  206 YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDIVTTTTHKSLRG  256 (477)
T ss_pred             HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cceeeccccccccC
Confidence            6899999999999999998763 33222210011222    38886  4588864

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=93.70  E-value=0.88  Score=45.89  Aligned_cols=157  Identities=19%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             eEEEcCCHHHHHHHHHHHHHhh--cC---------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCc
Q 013235          160 VVFFTNSGTEANELAIMMARLY--TG---------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY  228 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~--t~---------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~  228 (447)
                      .=+|+++|+-+|..|+..||..  ++         +.-|+....--|-+...+...-+       +....+..++  ...
T Consensus       161 DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg-------~gtd~c~~v~--t~e  231 (510)
T KOG0629|consen  161 DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLG-------LGTDHCIKVK--TDE  231 (510)
T ss_pred             CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhc-------cCCceeEEec--ccc
Confidence            3579999999999999999852  11         12233223333322222211111       1111233333  222


Q ss_pred             CCCCCCChHHHHHHHHHHHHccCC-CCeEEEEEccccCCC--ceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC
Q 013235          229 RGVFGADGEMYAKDVQDLIDFGTS-GHVAGFLSESIQGVG--GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS  305 (447)
Q Consensus       229 ~~~~~~d~~~~~~~le~~i~~~~~-~~~aavi~Epi~~~g--G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~  305 (447)
                      ++..      ..++||+.|..+.. +-+ -+++.-.-|++  |..-+    |..|.++|++|+..+-+|-+--|    | 
T Consensus       232 ~Gkm------~~~dLe~kile~k~kg~~-Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHvDAAwGG----g-  295 (510)
T KOG0629|consen  232 RGKM------IPDDLEKKILEAKAKGGV-PFFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHVDAAWGG----G-  295 (510)
T ss_pred             cCcc------chHHHHHHHHHHHhcCCC-CeEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEeeccccc----c-
Confidence            2221      25778876654322 222 13333333332  44444    99999999999999999987644    1 


Q ss_pred             Ccccc----cccCC-CCCEEEee--ccccCCccccccccCHHH
Q 013235          306 HFWGF----EAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPEI  341 (447)
Q Consensus       306 ~~~~~----~~~gv-~pDivt~s--K~lg~G~pigav~~~~~i  341 (447)
                      -+.+.    ..-|+ ..|-|+..  |-+|..++.|+.+++.+=
T Consensus       296 lLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~g  338 (510)
T KOG0629|consen  296 LLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEG  338 (510)
T ss_pred             cccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHH
Confidence            11111    12345 34677765  888888999999988764

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=93.22  E-value=11  Score=38.83  Aligned_cols=182  Identities=17%  Similarity=0.168  Sum_probs=91.4

Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-hCCEEEEeccccCcccc-C---CCcccccccC
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEVQAGFART-G---SHFWGFEAHG  314 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tGfgr~-G---~~~~~~~~~g  314 (447)
                      ...+.+.+++    ++.+++.+--+-..|.+-+    .++|.++.-| +++++-+|-.-.||--- |   ...|.|..-+
T Consensus       208 ~~k~~~~i~e----Nti~lv~~~~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~  279 (491)
T KOG1383|consen  208 PGKVVRMIDE----NTIMLVGSLPNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPG  279 (491)
T ss_pred             HHHHHHHhcc----ceEEEEEEcCCCCccchhh----HHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCC
Confidence            3455555543    5667776654445565555    8999999999 99999999998887331 2   1123332222


Q ss_pred             CCCCEEEee--cccc-CCccccccccC-HHHH-HhhcC-----Cc--ccccCCCC--hHHHHHHHHHHHHHhhhhHH---
Q 013235          315 VVPDIVTMA--KGIG-NGIPLGAVVTT-PEIA-EVLTR-----RN--YFNTFGGN--PVCTAAGHAVLKVIQKDKLQ---  377 (447)
Q Consensus       315 v~pDivt~s--K~lg-~G~pigav~~~-~~i~-~~l~~-----~~--~~~T~~~n--p~a~aaala~L~~i~~~~l~---  377 (447)
                       ++-|-+-+  -|+. .|  +|+|+-+ +++. +.+.-     +.  ...|.+|+  ..-.++.-++|=-+-.+++.   
T Consensus       280 -V~Sisa~~HKYGl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~  356 (491)
T KOG1383|consen  280 -VTSISADGHKYGLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENT  356 (491)
T ss_pred             -ceeEeeccceeeeeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHH
Confidence             23444444  2222 12  2555533 3322 11110     11  11233333  11122233333223345444   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++.+....|++++++.. ++.    +-|+-++ .+-+.+.+.  .    ..-++.+.|.++|-.+.
T Consensus       357 ~~ive~~~~l~egie~i~-~i~----i~gkp~v-s~~~~~s~~--~----~i~elsd~l~~~GW~ln  411 (491)
T KOG1383|consen  357 QNIVETARKLREGIENIK-GIK----IVGKPLV-SFILFGSND--V----NIFELSDLLRKKGWILN  411 (491)
T ss_pred             HHHHHHHHHHHHhhhccc-cce----ecCCCcE-EEEEccCCc--c----chhhhhHHHHhcCcCcc
Confidence            556667788888888742 222    3333333 333322211  1    13467778888886653

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=92.04  E-value=14  Score=36.81  Aligned_cols=161  Identities=16%  Similarity=0.131  Sum_probs=88.5

Q ss_pred             EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccC-Ccc
Q 013235          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGN-GIP  331 (447)
Q Consensus       256 aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~-G~p  331 (447)
                      +-|..-++....|+..++..+.      ..  +.++|+|=.=.-|+|         ..++ +-|++.+|  |-+|+ |  
T Consensus       146 ayv~~~~NeTi~Gv~v~~~p~~------~~--~~~~v~D~SS~ilsr---------~iDvsk~dviyagaQKnlGpaG--  206 (365)
T COG1932         146 AYVHFCWNETISGVEVPELPDI------GS--DGLLVADASSAILSR---------PIDVSKYDVIYAGAQKNLGPAG--  206 (365)
T ss_pred             cEEEEecCCcccceEccCCCCC------CC--CceEEEecccHHhcC---------CCChhHcceEEEehhhccCccc--
Confidence            3355555545556655432221      11  178888854332322         2233 34888888  99995 7  


Q ss_pred             ccccccCHHHHHhhcCC------------cccccCCCChHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235          332 LGAVVTTPEIAEVLTRR------------NYFNTFGGNPVCT-AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY  398 (447)
Q Consensus       332 igav~~~~~i~~~l~~~------------~~~~T~~~np~a~-aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~  398 (447)
                      ++.++.++++.+.+...            ...+||+..|..+ ....-+++.+++.+=++.+.++.+.=-+.|-+..++.
T Consensus       207 ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s  286 (365)
T COG1932         207 LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS  286 (365)
T ss_pred             eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            68889999988766442            1236777765544 4455688888876533333333333333344444433


Q ss_pred             CC----eeeEeecceeE-EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          399 GI----IGDVRGRGFLL-GVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       399 ~~----i~~vrg~Gl~~-giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.    +.. --+..|- .+.+.        +.+....+++++.++|+...
T Consensus       287 ~fy~~~v~~-~~RS~mnV~f~~~--------~~~ld~~fv~eae~~gl~~l  328 (365)
T COG1932         287 DFYRNLVAK-ANRSRMNVTFTLV--------DAELDKGFVAEAEAAGLIYL  328 (365)
T ss_pred             Cccccccch-hhccceeEEEEcC--------cHHHHHHHHHHHHHcCCcee
Confidence            22    222 2223332 23332        33456788999999887654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=92.00  E-value=0.86  Score=39.99  Aligned_cols=56  Identities=14%  Similarity=0.142  Sum_probs=41.6

Q ss_pred             cchHHHHHHHHHHHhCC----CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235          139 LNHAIADFAEALASKMP----GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~----~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG  196 (447)
                      ..+.+..+++.+.+..+    .+.++|++++++++|++.+++....  .++.|++.++.|.|
T Consensus        94 ~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--pGD~VlVp~P~Y~~  153 (153)
T PLN02994         94 LANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--PGDAFLVPTPYYAA  153 (153)
T ss_pred             cHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--CCCEEEEeCCCCCC
Confidence            44555666666666543    3457899999999999998875543  67889999999975

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=90.73  E-value=13  Score=36.88  Aligned_cols=173  Identities=17%  Similarity=0.183  Sum_probs=87.7

Q ss_pred             CCceEEEcCCHHHHHHHHHHHHHhh----cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          157 NLKVVFFTNSGTEANELAIMMARLY----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       157 ~~~~v~~~~sGseA~e~Aik~ar~~----t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                      +...++|+++.++-+.+|+-..-..    .+.-+|++-.+-|--....+--+ ....|++         .-....+.   
T Consensus        65 ~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f-~s~~y~w---------~Gda~~~~---  131 (363)
T PF04864_consen   65 DGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFF-DSRLYKW---------AGDASNFK---  131 (363)
T ss_dssp             TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT--BTTEEE---------EEECCCGT---
T ss_pred             cCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhc-cccCccc---------cccHHhhc---
Confidence            3467889999999999888643222    12346777666663322221100 0011111         11011110   


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~  312 (447)
                                     +...++...=++..|+++.|....          .+++..+..+|-|=+|--=     ++-.+. 
T Consensus       132 ---------------~~~~~~~~IElVTSPNNPDG~lr~----------~V~~g~~~k~I~D~AYYWP-----hyTpI~-  180 (363)
T PF04864_consen  132 ---------------NSDNPSPYIELVTSPNNPDGQLRE----------AVLNGSSGKVIHDLAYYWP-----HYTPIT-  180 (363)
T ss_dssp             ---------------T-S-CCGEEEEEESS-TTT----------------SSTTTEEEEEEE-TT-ST-----TTS----
T ss_pred             ---------------cCCCCCCeEEEEeCCCCCcccccc----------hhcCCCCcceeeeeeeecc-----cccccC-
Confidence                           111134566678888876653322          1234455667999887311     111111 


Q ss_pred             cCCCCCEE--Eeecccc-CCccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh
Q 013235          313 HGVVPDIV--TMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (447)
Q Consensus       313 ~gv~pDiv--t~sK~lg-~G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~  373 (447)
                      .-..-||+  |+||.-| +|-|+|+.+.+ ++++..+......+|.|.+-=++..++..|+.+-+
T Consensus       181 ~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~  245 (363)
T PF04864_consen  181 APADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLD  245 (363)
T ss_dssp             S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHh
Confidence            11234777  6889988 68999998876 55666665555668999888888888888887743

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=82.17  E-value=29  Score=33.83  Aligned_cols=185  Identities=16%  Similarity=0.160  Sum_probs=96.9

Q ss_pred             chHHHHHHHHHHHhCCCCCceEE-EcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          140 NHAIADFAEALASKMPGNLKVVF-FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~-~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      +-.+..|.+-.++.+.....-|. -.-||+.|+..|+--..  .+++.+++..|+=.-...-...+.+...-  .....+
T Consensus        64 D~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~L--RpgDell~i~G~PYDTLeevIG~rg~~~g--SL~dfg  139 (416)
T COG4100          64 DLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGIL--RPGDELLYITGSPYDTLEEVIGLRGEGQG--SLKDFG  139 (416)
T ss_pred             ccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhcc--CCCCeEEEecCCcchhHHHHhccCCCCcc--cHHHhC
Confidence            44566677777777754322111 13589999999986432  25677776655432222222222221100  000012


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC---CChHHHHHHHHHHh--CCEEEE
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA---PGYLPAVYKSIKKA--GGLCIA  293 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~---~~~l~~l~~l~~~~--g~llI~  293 (447)
                      +..-..|....+.  .|    .+.+++.+.    +++..|.+   |-+-|.---|   -.-++++.++.++-  ++++.+
T Consensus       140 i~Y~~v~Lt~~gk--iD----~~~v~~~i~----~~tkli~I---QRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFV  206 (416)
T COG4100         140 IKYKAVPLTADGK--ID----IQAVKTAIS----DRTKLIGI---QRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFV  206 (416)
T ss_pred             cceeecccccCCc--cc----HHHHHHhcC----ccceEEEE---EeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEE
Confidence            2111111111111  12    445555553    24455543   4443432211   23456666666664  689999


Q ss_pred             eccccCccccCCCcccccccCCCCCEE--EeeccccCCc--cccccccCHHHHHhhcC
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGI--PLGAVVTTPEIAEVLTR  347 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~--pigav~~~~~i~~~l~~  347 (447)
                      |..|..|-.+-      |.-.+-.|++  .+=|-.|||+  .=||+++++++.+....
T Consensus       207 DNCYGEFvE~~------EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~y  258 (416)
T COG4100         207 DNCYGEFVEEK------EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAY  258 (416)
T ss_pred             eccchhhhhcc------CccccchhhhccceeeCCCCceeeccceeechHHHHHhhce
Confidence            99987663221      3334556887  4779999886  45789999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		6e-55
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		9e-55
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		1e-54
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		2e-54
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		2e-50
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		2e-49
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		4e-46
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		1e-43
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		1e-43
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		3e-42
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		3e-42
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		4e-42
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		1e-41
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		2e-41
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		3e-41
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		4e-41
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		2e-40
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		8e-40
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		2e-38
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		2e-36
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		2e-36
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		3e-36
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		5e-36
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		2e-35
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		2e-34
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		2e-34
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		4e-34
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		1e-33
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		2e-33
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		6e-33
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		6e-33
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		1e-32
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		1e-32
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		2e-32
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		9e-32
1oat_A	439	Ornithine Aminotransferase Length = 439		1e-31
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		3e-31
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		8e-31
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		5e-29
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		2e-28
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		4e-28
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		7e-28
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		7e-28
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		1e-26
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		6e-25
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		9e-25
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		1e-24
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		1e-24
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		1e-24
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		2e-24
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		8e-24
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		1e-23
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		1e-23
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		7e-22
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		2e-21
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		3e-21
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		6e-21
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		8e-21
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		1e-20
3fq8_A	427	M248i Mutant Of Gsam Length = 427		2e-20
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		3e-19
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		7e-19
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		2e-18
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		3e-18
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		3e-17
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		4e-17
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		1e-15
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		2e-15
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		4e-15
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		4e-15
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		7e-15
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		1e-14
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		2e-14
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		3e-14
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		4e-14
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		2e-05

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score =  211 bits (537), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 23  EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 82
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 83  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 142
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
              AT  +  K  V    V     P P  YR  F  +G   Y  ++    DLID  +SG+
Sbjct: 143 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 201
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  G
Sbjct: 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 260
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
           V PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q
Sbjct: 261 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 320
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
           +D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA
Sbjct: 321 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 373

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score =  211 bits (536), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 25  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 84
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 85  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
              AT  +  K  V    V     P P  YR  F  +G   Y  ++    DLID  +SG+
Sbjct: 145 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
           V PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
           +D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 375

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 25  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 84
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 85  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
              AT  +  K  V    V     P P  YR  F  +G   Y  ++    DLID  +SG+
Sbjct: 145 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
           V PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
           +D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 375

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 24  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 83
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 84  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 143
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
              AT  +  K  V    V     P P  YR  F  +G   Y  ++    DLID  +SG+
Sbjct: 144 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 202
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  G
Sbjct: 203 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 261
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
           V PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q
Sbjct: 262 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 321
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
           +D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA
Sbjct: 322 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 374

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 193/368 (52%), Gaps = 28/368 (7%)
Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L + YS+ P   V GK  +++DE G  YLD   GIA    GH HP +V++I +Q +++ H
Sbjct: 3   LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----II 188
            + L+ N    + AE L+    G    VFF N+GTEANE AI +AR Y          I+
Sbjct: 63  CSNLFWNRPQMELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 120
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
           S  N++HG   G++ AT Q  ++               P+  +          +V+DL  
Sbjct: 121 SAHNSFHGRTLGSLTATGQPKYQ--------------KPFEPLVPGFEYFEFNNVEDLRR 166
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
             +    A FL E IQG  GI+     +L    K   +   L + DEVQ G  RTG  F 
Sbjct: 167 KMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF- 224
Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            ++ +GVVPD++T AKG+G G+P+GAV+   E A VL   ++  TFGGNP+   AG  V+
Sbjct: 225 AYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVI 283
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF---VTDRQLKTPA 425
           K + K+         G+YL ++L  +K++Y ++ DVRG G ++G++F   V++R++ T  
Sbjct: 284 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKC 343
Query: 426 KAETLYIM 433
               L ++
Sbjct: 344 FENKLLVV 351

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 191/368 (51%), Gaps = 28/368 (7%)
Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L + YS+ P   V GK  +++DE G  YLD   GIA    GH HP +V++I +Q +++ H
Sbjct: 15  LXNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 74
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----II 188
            + L+ N    + AE L+    G    VFF N+GTEANE AI +AR Y          I+
Sbjct: 75  CSNLFWNRPQXELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 132
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
           S  N++HG   G++ AT Q  ++               P+  +          +V+DL  
Sbjct: 133 SAHNSFHGRTLGSLTATGQPKYQ--------------KPFEPLVPGFEYFEFNNVEDLRR 178
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
             +    A FL E IQG  GI+     +L    K   +   L + DEVQ G  RTG  F 
Sbjct: 179 KXSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLF- 236
Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            ++ +GVVPD++T AKG+G G+P+GAV+   E A VL   ++  TFGGNP+   AG  V+
Sbjct: 237 AYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF---VTDRQLKTPA 425
           K + K+         G+YL ++L   K++Y ++ DVRG G  +G++F   V++R++ T  
Sbjct: 296 KELTKEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVATKC 355
Query: 426 KAETLYIM 433
               L ++
Sbjct: 356 FENKLLVV 363

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 181/351 (51%), Gaps = 41/351 (11%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+  V GK  YL+DE G+ YLD   GI     GH +P + +++  Q++++ H + LY N 
Sbjct: 11  PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENP 70
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND--IISLRNAYHG 196
              + A  L        KV FF NSGTE+ E AI +AR Y    G N    IS  N++HG
Sbjct: 71  WQEELAHKLVKHFWTEGKV-FFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHG 129
Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK-----DVQDLIDFGT 251
              G++ AT Q  +         H    P          G  YAK      V  L+D  T
Sbjct: 130 RTYGSLSATGQPKF---------HKGFEPL-------VPGFSYAKLNDIDSVYKLLDEET 173
Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
               AG + E IQG GG+ E +  +L  + +  K+   L I DEVQ G  RTG  F+ ++
Sbjct: 174 ----AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQ 228
Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
              + PD++ +AKG+G G+P+GA++   E+A+  T  ++ +TFGGNP+   AG  V  V 
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVV--VD 286
Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           + +KL  +   VG+Y KE+L  L       G V+GRG +LG+E   +R+ K
Sbjct: 287 EVEKLLPHVREVGNYFKEKLKELGK-----GKVKGRGLMLGLEL--ERECK 330

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 186/375 (49%), Gaps = 9/375 (2%)
Query: 54  PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
           P  GP +  +  +R+  +S  +    + P+  VD     + D +G  ++D   GIA    
Sbjct: 21  PLPGPRSGALAERRRAAVSAGVGS--TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTV 78
Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGNL-KVVFFTNSGTEAN 171
           G  HP V  +I +Q     H+  +   +      AE L +  PG+  K     NSG EA 
Sbjct: 79  GASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAV 138
Query: 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPY 228
           E AI +ARL TG   +++  NAYHG    TM  TA+S     +F      V+      P 
Sbjct: 139 ENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPL 198
Query: 229 RGVFGADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287
           R   G  GE  A+     I+       +A  + E IQG GG I  APG+L  +     + 
Sbjct: 199 RDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN 258
Query: 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR 347
           G + IADEVQ GFARTG+ F   E  G+VPDIVTMA GI  G+PL AV    E+ + +  
Sbjct: 259 GVVFIADEVQTGFARTGAWF-ASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVYA 317
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407
                T+GGNPV  AA  A L V+++  L   A  + + +  RL+AL ++  IIG+VRGR
Sbjct: 318 GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGR 377
Query: 408 GFLLGVEFVTDRQLK 422
           G +L +E V    L+
Sbjct: 378 GAMLAIEIVKPGTLE 392

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 163/333 (48%), Gaps = 18/333 (5%)
Query: 83  LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
           L +V G+   ++D  G  Y+D  GG      GH +P VV+++  Q + +           
Sbjct: 29  LLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 88
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202
             +F   L + +P  L  VF  NSGTEANE A+  AR +TG    ++    + G   G++
Sbjct: 89  RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL 148
Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262
             T +  ++              +P+  +      +   DV+ L         A  + E 
Sbjct: 149 SVTWEPKYR--------------EPFLPLVEPVEFIPYNDVEAL-KRAVDEETAAVILEP 193
Query: 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322
           +QG GG+    P +L A  +  ++ G L I DE+Q G  RTG  F  FE  G+VPDI+T+
Sbjct: 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTL 252
Query: 323 AKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV 382
           AK +G G+PLG  V   E+A  + +  +  TFGGNP+  AAG A ++ +++ +L   A  
Sbjct: 253 AKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAE 312
Query: 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           +G +  E+L A+      I +VRG G ++G+E 
Sbjct: 313 LGPWFMEKLRAIPSPK--IREVRGMGLMVGLEL 343

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 173/350 (49%), Gaps = 8/350 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADEVQ+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 184/385 (47%), Gaps = 24/385 (6%)
Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHP 118
           DE+LAK + ++       +S     V  K +  ++ D  G+RYLD   G+  V  G+   
Sbjct: 10  DELLAKDEQYVWHGX-RPFSPNSTTVGAKAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRK 68
Query: 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
            + ++   Q++ + +      +      AE L   + G   V+FF+NSG+EANE A  +A
Sbjct: 69  ELAEAAYKQLQTLSYFPXSQSHEPAIKLAEKLNEWLGGEY-VIFFSNSGSEANETAFKIA 127
Query: 179 RLYTGCN------DIISLRNAYHGNAAGTMG--ATAQSNWKFNVVQTGVHHALNPDPYRG 230
           R Y             S    YHGN   T      AQ  +++    +G  H   PD YR 
Sbjct: 128 RQYYAQKGEPHRYKFXSRYRGYHGNTXATXAATGQAQRRYQYEPFASGFLHVTPPDCYRX 187
Query: 231 VFGADGEMY----AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
                  +Y     K+V  +  +  S  +A F+ E I   GGI+     Y  AV+++ +K
Sbjct: 188 PGIERENIYDVECVKEVDRVXTWELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQK 247
Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL 345
            G L I+DEV  GF RTG  F GF  + V PDI+T AKGI +  +PL A     EI E  
Sbjct: 248 HGALLISDEVICGFGRTGKAF-GFXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAF 306
Query: 346 TRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399
             +       + NTFGGNP   A     L++I+ + L   +   GS L E+L     ++ 
Sbjct: 307 KGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHP 366
Query: 400 IIGDVRGRGFLLGVEFVTDRQLKTP 424
           ++GD+RG+G L+G+E V D++ K P
Sbjct: 367 LVGDIRGKGLLVGIELVNDKETKEP 391

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 173/350 (49%), Gaps = 8/350 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADEVQ+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 8/350 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADE Q+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 186/372 (50%), Gaps = 16/372 (4%)
Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP++ E+  +R   +S  +    + P+ VV      + D +G R +D   GIA    G+ 
Sbjct: 38  GPASLELNKRRAAAVSGGVG--VTLPVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNS 95
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGN--LKVVFFTNSGTEANEL 173
            P VVD++ +Q+++  H+  +   +      AE L    PG+   + V F NSG EA E 
Sbjct: 96  APRVVDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLF-NSGAEAVEN 154
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG 230
           +I +AR +T    +++   AYHG    TM  TA+S      F      ++ A    PYR 
Sbjct: 155 SIKVARAHTRKQAVVAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRD 214
Query: 231 VF-----GADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
                    DGE+ A+   +LID    + ++A  + E I G GG I  A G+LPA+ +  
Sbjct: 215 NLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWC 274
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           +    + IADEVQ GFARTG+ F   +   V PD++  A GI +G PL AV    EI + 
Sbjct: 275 RDNDVVFIADEVQTGFARTGAMF-ACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDA 333
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   TFGGNPV  AA  A ++ I++D +   A  +   + +RL  L+     +GDV
Sbjct: 334 PHTSGLGGTFGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDV 393
Query: 405 RGRGFLLGVEFV 416
           RGRG ++ +E V
Sbjct: 394 RGRGAMIAMELV 405

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 8/350 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GG A +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADEVQ+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 166/345 (48%), Gaps = 28/345 (8%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P   V G+   L+D+ G+ Y+D  GGIA    GH HP + +++  Q  +  H+   Y N 
Sbjct: 22  PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNE 81
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYH 195
            +   A+ L      +   VFF NSG EANE A+ +AR +      +  + I++ +NA+H
Sbjct: 82  PVLRLAKKLIDATFADR--VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFH 139
Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           G    T+ A  Q  +   F  +   + HA   D                   LID  T  
Sbjct: 140 GRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND-------------INSASALIDDST-- 184
Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
                + E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +
Sbjct: 185 --CAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHY 241
Query: 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK 373
           GV PD++T AK +G G P+GA++ T E A V+T   +  T+GGNP+ +A    VL++I  
Sbjct: 242 GVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT 301
Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
            ++ N       +  ERL  +  +YG+  +VRG G L+G     D
Sbjct: 302 PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNAD 346

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 161/336 (47%), Gaps = 24/336 (7%)
Query: 86  VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD 145
           V GK   ++D+ G+ Y+D  GGIA    GHCHP +V+++ +Q + + H++ ++ N     
Sbjct: 44  VKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALR 103
Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAA 199
               L        + V F NSGTEANE A  +AR Y           II+  NA+HG + 
Sbjct: 104 LGRKLIDAT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL 161
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
            T+    Q  +              P P   +     +++A  V+ ++D     H    +
Sbjct: 162 FTVSVGGQPKYS---------DGFGPKPADIIHVPFNDLHA--VKAVMD----DHTCAVV 206
Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E IQG GG+    P +L  +     +   L + DEVQ G  RTG  F  +  +GV PDI
Sbjct: 207 VEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDI 265
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           +T AK +G G P+ A++TT EIA      ++ +T+GGNP+  A   A   +I   ++   
Sbjct: 266 LTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQG 325
Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
            H       + L A+ +++ I  D+RG G L+G E 
Sbjct: 326 IHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAEL 361

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score =  161 bits (407), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 10/366 (2%)
Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP + E+ A++++ ++  +    + P+ VV      L D +G + +D   GIA    G+ 
Sbjct: 28  GPISQELQARKQSAVAAGVG--VTLPVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNS 85
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANELA 174
            P VVD++  Q+    H+  +   +      AE L    PG+  K     NSG EA E A
Sbjct: 86  APAVVDAVTQQVAAFTHTCFMVTPYEGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENA 145
Query: 175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WK--FNVVQTGVHHALNPDPYRGV 231
           + +AR YT    ++   +AYHG    TM  TA++  +K  F      V+      P+R  
Sbjct: 146 VKIARAYTRRQAVVVFDHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRD- 204
Query: 232 FGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290
              DG   A    DLI+    + +VA  + E + G GG +  APG+L A+ K     G +
Sbjct: 205 GETDGAAAAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAV 264
Query: 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY 350
            +ADEVQ GFARTG+ F   E   VVPD++  AKGI  G+PL AV    EI +       
Sbjct: 265 FVADEVQTGFARTGALF-ACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGL 323
Query: 351 FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
             T+GGNP+  AA  AV+  I+++ L   A  +G  +  RL AL      IG+VRGRG +
Sbjct: 324 GGTYGGNPLACAAALAVIDTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAM 383
Query: 411 LGVEFV 416
           + VE V
Sbjct: 384 IAVELV 389

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 185/372 (49%), Gaps = 16/372 (4%)
Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP +  ++ ++ T ++  +    + P+  V      + D +G R +D   GIA    G+ 
Sbjct: 21  GPRSQALIDRKGTAVARGVG--TTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNS 78
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP--GNLKVVFFTNSGTEANEL 173
            P VV+++ +Q+    H+  +   +       E L    P  G+ +   F NSG+EA E 
Sbjct: 79  APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALF-NSGSEAVEN 137
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG 230
           A+ +AR +T    +++  +AYHG    TM  TA+       F      ++ A    P+R 
Sbjct: 138 AVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRD 197
Query: 231 V-FG----ADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
             FG     DGE+ AK    +ID    + ++A  + E IQG GG I  A G+LP +    
Sbjct: 198 AEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC 257
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           +K   + IADEVQ GFARTG+ F   E  G+ PD++  A GI  G+PL AV    EI + 
Sbjct: 258 RKNDVVFIADEVQTGFARTGAMF-ACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDS 316
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T+GGNP+  AA  A ++ I+ + L   A  +   +K+RL  L+ +   IGDV
Sbjct: 317 PHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV 376
Query: 405 RGRGFLLGVEFV 416
           RGRG ++ +E V
Sbjct: 377 RGRGAMIAMELV 388

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 5/355 (1%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G+   L +ENGR  +D  G       G+ HP +V ++         +T+L  ++
Sbjct: 39  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 142 AIA-DFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
           A A   AE L +  PG     ++F +SG++ANE A       TG + +I+   AYHG   
Sbjct: 99  APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 158
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG-ADGEMYAKDVQDLIDFGTSGHVAGF 258
           G+M  +  S         G+     PDPYR       G+     + + +    +G +   
Sbjct: 159 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 218
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
             E IQ  GG+I    G+L       +  G L + DEV+ G AR+G     FE  G VPD
Sbjct: 219 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPD 277
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           I+ + KG+G G+PL AV+   EI +  +      T  GNP+  AAG AVL+ I +D L  
Sbjct: 278 ILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQTLHGNPISAAAGLAVLETIDRDDLPA 336
Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
            A   G  L++ L+ L  ++ +IGD+RGRG   G+E V DRQ + PA+AET  ++
Sbjct: 337 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLI 391

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 178/380 (46%), Gaps = 29/380 (7%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D NGRRYLDA  G+  +  G  H  ++D+   Q +R    H+    ++  
Sbjct: 47  VTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQ 106
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  + M               I++  NAYHG
Sbjct: 107 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 166
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T +  N  F +   G  H   P  +R  +G +GE         A+++++ I 
Sbjct: 167 VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 224
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 225 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-W 283
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +   PD +  +K +  G  P+GAV+  PE++       E +    +  T  G+PV 
Sbjct: 284 GCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 343
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +ERL  + ++   IG+ RG GF+  +E V D+ 
Sbjct: 344 CAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKDKA 402
Query: 421 LKTPAKAETLYIMDKMKGIC 440
            KTP     L + +++   C
Sbjct: 403 SKTPFDG-NLSVSERIANTC 421

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 5/355 (1%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G+   L +ENGR  +D  G       G+ HP +V ++         +T+L  ++
Sbjct: 26  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 142 AIA-DFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
           A A   AE L +  PG     ++F +SG++ANE A       TG + +I+   AYHG   
Sbjct: 86  APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 145
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG-ADGEMYAKDVQDLIDFGTSGHVAGF 258
           G+M  +  S         G+     PDPYR       G+     + + +    +G +   
Sbjct: 146 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 205
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
             E IQ  GG+I    G+L       +  G L + DEV+ G AR+G     FE  G VPD
Sbjct: 206 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPD 264
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           I+ + KG+G G+PL AV+   EI +  +      T  GNP+  AAG AVL+ I +D L  
Sbjct: 265 ILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQTLHGNPISAAAGLAVLETIDRDDLPA 323
Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
            A   G  L++ L+ L  ++ +IGD+RGRG   G+E V DRQ + PA+AET  ++
Sbjct: 324 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLI 378

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 179/369 (48%), Gaps = 38/369 (10%)
Query: 72  SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKR 130
            P LF     PL +  G+  +++D +G +YLD   GI     G   HP V+   + Q+++
Sbjct: 20  DPELF-----PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK 74
Query: 131 IQHSTVL-YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDII 188
           + H+    + N    + A+ L +  PGN  K VFF+NSGTEA E +I + +  TG   II
Sbjct: 75  LAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVK-NTGRKYII 133
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVV---QTGVHHALNPDPYRGVFGADG-EMYAKDVQ 244
           +    +HG   G++  TA    + ++V     GV H   P+PYR  +  +G E  ++ V 
Sbjct: 134 AFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVN 193
Query: 245 DLIDFGTS---------GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
            +I+F              VAG   E IQG GG +     +   + K  KK G L + DE
Sbjct: 194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDE 253
Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTF 354
           VQ G  RTG  F   E    VPD++T+AK +G GI P+GA +   ++        + NTF
Sbjct: 254 VQMGLGRTGKLF-AIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTF 310
Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
           GGN +  A G  V+ +++   L  + + +G    E L  L D      DVRG G   G+E
Sbjct: 311 GGNALACAIGSKVIDIVK--DLLPHVNEIGKIFAEELQGLAD------DVRGIGLAWGLE 362
Query: 415 F----VTDR 419
           +    V DR
Sbjct: 363 YNEKKVRDR 371

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 176/380 (46%), Gaps = 29/380 (7%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D NGRRYLDA  G+  +  G  H  ++D+   Q +R    H+    ++  
Sbjct: 53  VTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMSDQ 112
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  + M               I++  NAYHG
Sbjct: 113 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 197 NAAGTMGATA-QSNWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T    N  F +   G  H   P  +R  +G +GE         A+++++ I 
Sbjct: 173 ATAVSASMTGFPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 230
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNT-W 289
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +   PD +  +  +  G  P+GAV+  PE++       E +    +  T  G+PV 
Sbjct: 290 GCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 349
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +ERL  + ++   IG+ RG GF+  +E V D+ 
Sbjct: 350 CAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKDKA 408
Query: 421 LKTPAKAETLYIMDKMKGIC 440
            KTP     L + +++   C
Sbjct: 409 SKTPFDG-NLSVSERIANTC 427

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 180/356 (50%), Gaps = 23/356 (6%)
Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNH--AIADFAE 148
           +L D  G   LDA  G+  V  G+    + +    Q++ + + +T     H  AIA  A+
Sbjct: 48  WLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIA-LAQ 106
Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYHGN--AAG 200
            LA   PG+L  VFF   G+EAN+  I M R Y           IIS +NAYHG+  A+ 
Sbjct: 107 KLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASS 166
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDFGTSGHVA 256
            +G  A  + +  ++   VHH   P+ +      D E +    A+++++ I       VA
Sbjct: 167 ALGGMAGMHAQSGLIPD-VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVA 225
Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV 316
            F++E +QG GG+I     Y P + +   K   L IADEV  GF RTG+ F G +  G+ 
Sbjct: 226 AFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIR 284
Query: 317 PDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK 373
           P I+T+AKG+ +G  P+G  +   E+A V+ +   N+  T+ G+PV  A     L+++++
Sbjct: 285 PHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE 344
Query: 374 DKLQNNA-HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAE 428
           + + ++  +V   YLKE+  AL D + ++G+ +  G +  +    ++  +    +E
Sbjct: 345 ENILDHVRNVAAPYLKEKWEALTD-HPLVGEAKIVGMMASIALTPNKASRAKFASE 399

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 173/380 (45%), Gaps = 29/380 (7%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D NGRRYLDA  G+     G  H  ++D+   Q +R    H+     +  
Sbjct: 53  VTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXSDQ 112
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  +                 I++  NAYHG
Sbjct: 113 TVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T +  N  F +   G  H   P  +R  +G +GE         A+++++ I 
Sbjct: 173 VTAVSASXTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 230
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 231 REGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-W 289
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +   PD +  +K +  G  P GAV+  PE++       E +    +  T  G+PV 
Sbjct: 290 GCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 349
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +ERL  + ++   IG+ RG GF   +E V D+ 
Sbjct: 350 CAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFXWALEAVKDKA 408
Query: 421 LKTPAKAETLYIMDKMKGIC 440
            KTP     L + +++   C
Sbjct: 409 SKTPFDG-NLSVSERIANTC 427

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 176/380 (46%), Gaps = 29/380 (7%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D +GRRYLDA  G+  +  G  H  ++++   Q  R    H+    ++  
Sbjct: 45  VTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQ 104
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  + M               I++  NAYHG
Sbjct: 105 TVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 164
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T +  N  F +   G  H   P  +R  +G +GE         A++++D I 
Sbjct: 165 VTAVSASMTGKPYNSVFGLPLPGFIHLTCPHYWR--YGEEGETEAQFVARLARELEDTIT 222
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 223 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNT-W 281
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +  +PD +  +  +  G  P+GAV+  P++A       E +    +  T  G+PV 
Sbjct: 282 GCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVG 341
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +  L  + D+   IG+ RG GF+  +E V D+ 
Sbjct: 342 CAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPN-IGEYRGIGFMWALEAVKDKP 400
Query: 421 LKTPAKAETLYIMDKMKGIC 440
            KTP  A  L + +++   C
Sbjct: 401 TKTPFDA-NLSVSERIANTC 419

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 170/358 (47%), Gaps = 23/358 (6%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   +      + +  P+ +  GK  YL+D  GR+Y D    I+ V  GHCH
Sbjct: 38  PTSDDIFEREYKY---GAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    +F+
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 377

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 30/344 (8%)
Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFA 147
           G+  YLFD+  ++YLD   GI     G+ H      I  Q+ ++ H++ LY N  IA  A
Sbjct: 25  GQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIA--A 82
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI-----ISLRNAYHGNAAGTM 202
            A        L+ VFFTNSGTE+ E A   AR Y     +     I+ ++++HG   G +
Sbjct: 83  AAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHSFHGRTLGAL 142
Query: 203 GATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260
             TA   ++  F  + +GV  A   D                V+ L++  T       + 
Sbjct: 143 SLTANEKYQKPFKPLISGVKFAKYND-------------ISSVEKLVNEKT----CAIIL 185
Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320
           ES+QG GGI      +  A+ K   +   L IADE+Q G  R+G  F+ +E   ++PDI 
Sbjct: 186 ESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGK-FFAYEHAQILPDIX 244
Query: 321 TMAKGIGNGIPLGAVVTTPEIA-EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           T AK +G G+ +GA V   ++A   L   ++ +T+GGNP+  A  +AV ++ +++K+  N
Sbjct: 245 TSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILEN 304
Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
            + +  YL++ L  L +++      +G GF  G+    D+ +K 
Sbjct: 305 VNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSL--DKSVKV 346

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 179/377 (47%), Gaps = 21/377 (5%)
Query: 55  YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG 114
           + GP +  +  +R   ++  +      P+ V D     + D +G  ++D   GIA    G
Sbjct: 22  FPGPKSQALAERRSAVVAAGVAS--GVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVG 79
Query: 115 HCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANE 172
              P VV ++        H+  +   +       E L    PG+  K     NSG EA E
Sbjct: 80  ASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVE 139
Query: 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYR 229
            A+ +ARL TG + +++  +AYHG    TM  TA++      F      V+      P+R
Sbjct: 140 NAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFR 199
Query: 230 G----VFGADGEMYAKDVQDLIDFGTSG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
                + GA+    AK    +I+    G  VA  + E IQG GG I  A G+LPA+ +  
Sbjct: 200 EENPEITGAEA---AKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           K+ G + IADEVQ+GF RTG  F   +  GVVPDI+TMAKGI  G+PL A+    ++ + 
Sbjct: 257 KEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDA 315
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-----G 399
           +       T+GGNPV  AA  A +  +++  L   A  +      +L  L  +       
Sbjct: 316 VHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGS 375
Query: 400 IIGDVRGRGFLLGVEFV 416
           ++GD+RGRG +L +E V
Sbjct: 376 VVGDIRGRGAMLAIELV 392

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 166/347 (47%), Gaps = 28/347 (8%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +  GK  +++D   RRY D     ++V  GHCHP ++++++NQ K++   +  + + 
Sbjct: 29  PVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSRAFFSD 88
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNA 193
           ++    E   + + G  KV+   N+G EA+E A  + R +             II   N 
Sbjct: 89  SLG-VCERYLTNLFGYDKVLMM-NTGAEASETAYKLCRKWGYEVKKIPENSAKIIVCNNN 146
Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           + G   G + A+     K N           P+ +  V   D E   K++QD        
Sbjct: 147 FSGRTLGCVSASTDKKCKNN------FGPFVPN-FLKVPYDDLEALEKELQD-------P 192
Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
           +V  F+ E +QG  G+I  +  Y P V    KK   L +ADEVQ G  RTG        +
Sbjct: 193 NVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHH-Y 251
Query: 314 GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ 372
           GV PD++ + K +  G  P+ A++   ++  VL    + +T+GGNP+  A     LKV+ 
Sbjct: 252 GVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLI 311
Query: 373 KDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
            +KL  NA  +G+ +L+     LKD   ++ +VRG+G L  +EF  D
Sbjct: 312 NEKLCENADKLGAPFLQNLKEQLKDS-KVVREVRGKGLLCAIEFKND 357

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   +      + +  P+ +  GK  YL+D  GR+Y D    I+ V  GHCH
Sbjct: 38  PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    + +
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 377

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score =  134 bits (338), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   + + +   L   P+ +  GK  YL+D  GR+Y D     + V  GHCH
Sbjct: 1   PTSDDIFEREYKYGAHNYHPL---PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 57
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 58  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 115
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 116 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 166
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 167 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 225
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    + +
Sbjct: 226 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 284
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L
Sbjct: 285 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 340

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   + + +   L   P+ +  GK  YL+D  GR+Y D     + V  GHCH
Sbjct: 38  PTSDDIFEREYKYGAHNYHPL---PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    + +
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 377

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 34/347 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +   K  +++D N +RY D     ++V  GHCHP ++++++NQ K +   +  + + 
Sbjct: 48  PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNA 193
            +    E   + + G  KV+   N+G EANE A  + R +             I+  +N 
Sbjct: 108 PLG-ICERYLTNLLGYDKVLMM-NTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNN 165
Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK----DVQDLIDF 249
           + G   G + A+       N                  FG     ++K    D++ L + 
Sbjct: 166 FSGRTLGCISASTTKKCTSN------------------FGPFAPQFSKVPYDDLEALEEE 207
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
               +V  F+ E IQG  G+I  +  YL  VY   KK   L +ADEVQ G  RTG     
Sbjct: 208 LKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLC 266
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
              + V PD++ + K +  G  P+ AV+   +I  V+    + +T+GGNP+  +     L
Sbjct: 267 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEAL 326
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
            V+  +KL  NA  +G    E L        I+ DVRG+G L  +EF
Sbjct: 327 NVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF 373

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score =  131 bits (329), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 25/349 (7%)
Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEAL 150
           Y+  E+GRR +D   G+     G+    +VD++ +Q   + +++  Y+     A  AE +
Sbjct: 47  YVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKI 106
Query: 151 ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAAGTMGA 204
           A+  PG+L  +FFT  G+ A + A+  +  Y           II   + YHG+ A T   
Sbjct: 107 ATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166
Query: 205 TAQS-NW-KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV----QDLIDFGTSGHVAGF 258
           T ++ NW  F++ Q  +    +P+P R       E +  D+    +D I+      +A F
Sbjct: 167 TGRTGNWPNFDIAQDRISFLSSPNP-RHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAF 225
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP 317
           L+E I   GG+I    GY  A +K+I +K   L I+DEV  GF R G  F   +  GVVP
Sbjct: 226 LAEPILASGGVIIPPAGY-HARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVP 284
Query: 318 DIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN----YFN---TFGGNPVCTAAGHAVLK 369
           DI+T AKG+ +G +PLG +  +  +   ++  N    +F    T+   PV  AA  A ++
Sbjct: 285 DIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE 344
Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +++++ + + A  +  Y    L +L+D  G + + R  G +  V+ + D
Sbjct: 345 LMEREGIVDQAREMADYFAAALASLRDLPG-VAETRSVGLVGCVQCLLD 392

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 176/378 (46%), Gaps = 29/378 (7%)
Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNH-AIAD 145
           G+  YL+D  G + +D   G+  V  G+      ++   Q++ +  ++T     H A+ +
Sbjct: 39  GEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVE 98
Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHGNAA 199
            +  LA   P     VF+TNSG+E+ +  I M R Y           +I   N YHG+  
Sbjct: 99  LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTI 158
Query: 200 G--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD------GEMYAKDVQDLIDFGT 251
           G  ++G     + + ++   G+ H   P  Y+   G D      G + A+ +++ I    
Sbjct: 159 GGASLGGMKYMHEQGDLPIPGMAHIEQPWWYK--HGKDMTPDEFGVVAARWLEEKILEIG 216
Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
           +  VA F+ E IQG GG+I     Y P + +  +K   L +ADEV  GF RTG  F G +
Sbjct: 217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF-GHQ 275
Query: 312 AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---TFGGNPVCTAAGHAV 367
             G  PD+ T AKG+ +G +P+GAV     +AE L     FN   T+ G+PVC A  HA 
Sbjct: 276 HFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHAN 335
Query: 368 LKVIQKDKL-QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
           +  ++ + + Q     +G Y+++R      ++  + DVRG G +     V     K  AK
Sbjct: 336 VAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLV-----KNKAK 390
Query: 427 AETLYIMDKMKGICALFF 444
            E      ++  +C   F
Sbjct: 391 RELFPDFGEIGTLCRDIF 408

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 163/347 (46%), Gaps = 35/347 (10%)
Query: 82  PLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
           PL +V  K +  ++ D  G RY+D     + V  GH HP +++++++Q  R+  ++  + 
Sbjct: 17  PLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFH 76
Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLR 191
           +  +  + E +A     N ++V   N+G EA E AI  AR +            +II   
Sbjct: 77  SDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCE 134
Query: 192 NAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
           + +HG   G +  ++   +K  F  +  G+       PY       G++ A      +  
Sbjct: 135 DNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY-------GDLEA------LKA 177
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
             + + A F+ E IQG  GI     G+L    +  KK   L +ADE+Q G  RTG  F  
Sbjct: 178 AITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-A 236
Query: 310 FEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            +   V PD+  +   +G G+ P+       +I  V    ++ +TFGGNP+  A   A L
Sbjct: 237 CDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAAL 296
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           +V++++KL   +  +G  L  +L  + +   +I +VRG+G  +G+E 
Sbjct: 297 EVLEEEKLTERSLQLGEKLVGQLKEIDNP--MITEVRGKGLFIGIEL 341

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G    + D NG+ Y D F  +     GH    + D+I  Q+ +I HST+L + +
Sbjct: 27  PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTN 86
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAY 194
             A   AE L    P  L  VF+++SG EA E+A+ MA  Y            I+++N Y
Sbjct: 87  VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGY 146
Query: 195 HGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252
           HG+  G  ++G+    +  +  +    + A  P  YR   G   E   + +++L      
Sbjct: 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRELAQLLEE 206
Query: 253 GH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
            H  +A    ES +QG  G+I +  GYL  V +       L I DEV  GF RTG  F  
Sbjct: 207 HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-A 265
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCT 361
            E   V PD++   KGI  G +P+     T +I +         + +F  +++ GN +  
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFLLGVEFVTDR 419
           A     L + +    +N    V    K+    L+D + +  +GD+R  GF+ G E V  +
Sbjct: 326 AVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSK 382
Query: 420 QLKTPAKAE 428
           + K P  A+
Sbjct: 383 ETKEPYPAD 391

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G    + D NG+ Y D F  +     GH    + D+I  Q+ +I HST+L + +
Sbjct: 27  PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTN 86
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAY 194
             A   AE L    P  L  VF+++SG EA E+A+ MA  Y            I+++N Y
Sbjct: 87  VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGY 146
Query: 195 HGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252
           HG+  G  ++G+    +  +  +    + A  P  YR   G   E   + +++L      
Sbjct: 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEE 206
Query: 253 GH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
            H  +A    ES +QG  G+I +  GYL  V +       L I DEV  GF RTG  F  
Sbjct: 207 HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-A 265
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCT 361
            E   V PD++   KGI  G +P+     T +I +         + +F  +++ GN +  
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFLLGVEFVTDR 419
           A     L + +    +N    V    K+    L+D + +  +GD+R  GF+ G E V  +
Sbjct: 326 AVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSK 382
Query: 420 QLKTPAKAE 428
           + K P  A+
Sbjct: 383 ETKEPYPAD 391

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 26/352 (7%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V  +  +L D+ GR+  D+  G+ T   GH    + +++  Q+  + +S      H
Sbjct: 33  PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAY 194
            ++   AE +    PGNL  VFFT+SG+E    A+ M R Y           +I     Y
Sbjct: 93  PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGY 152
Query: 195 HG-NAAGTMGATAQSNWKF-----NVVQTGVHHALNPDPY-RGVFGADGEMYAKDVQDLI 247
           HG N AGT       N K        V    H  L  + Y RG+    G   A ++  LI
Sbjct: 153 HGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
           +   + ++A    E + G  G++    GYL    +   +   L + DEV  GF RTGS F
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF 272
Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR---------NYFNTFGGN 357
            G ++ GV PD++ +AK + NG IP+GAV+ + EI +    +          +  T+  +
Sbjct: 273 -GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331
Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
           PV  AAG A L ++QK+ L  +   V  + ++ L  +K    +I D+R  G 
Sbjct: 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVI-DIRNFGL 382

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 29/353 (8%)
Query: 74  SLFHLYSKPLNV-VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
           ++F+  SKP  V V G+  +L+D+ GRRYLD   G      GH    V + +  Q  R+ 
Sbjct: 3   NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL- 61
Query: 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFF----TNSGTEANELAIMMARLY------T 182
               ++ +   +D  E  A ++   + +  F     + G+EA E A+ +AR Y       
Sbjct: 62  --PFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119
Query: 183 GCNDIISLRNAYHGNAAGTMGAT---AQSNWKFNVVQTGVHHAL-NPDPYRGVFGADGEM 238
           G   +I+   +YHG + G++ A+   A+      +++      L  PDP R     +G  
Sbjct: 120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR-----NGAE 174
Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
            A+ ++ L++      VA F++E + G     +  APGY   V     +AG + IADEV 
Sbjct: 175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVM 234
Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAE-VLTRRNYFN--- 352
           +G  R GS        GV PDI  + KG+  G  PL  ++  P++ E V+     F    
Sbjct: 235 SGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGF 294
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405
           T+ G+PV  AAG +VL +++++ L   A   G+ L   L AL+ ++  +  VR
Sbjct: 295 TYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVR 347

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 161/353 (45%), Gaps = 35/353 (9%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
           VV  +   L   +GRR +D          G+ HP +  ++ +QI  + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPA 88
Query: 145 -DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNAYHGNA 198
            +    L +  P  L+ VF  +SG+ A E+A+ MA  Y        +  ++ RN YHG+ 
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRNGYHGDT 148
Query: 199 AGTMGATAQSN-----WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--T 251
            G M      N     WK  + +    +   P P   +   DGE    D +D++ F    
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRM---DGEW---DERDMVGFARLM 198
Query: 252 SGH---VAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
           + H   +A  + E I QG GG+    P +L  + K   + G L IADE+  GF RTG  F
Sbjct: 199 AAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258
Query: 308 WGFEAHGVVPDIVTMAKGI-GNGIPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCT 361
              E   + PDI+ + K + G  + L A +TT E+AE ++        +  TF GNP+  
Sbjct: 259 -ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLAC 317
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
           AA +A L +++    Q     +   L+E+L   +D   ++ DVR  G +  VE
Sbjct: 318 AAANASLAILESGDWQQQVADIEVQLREQLAPARDAE-MVADVRVLGAIGVVE 369

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 172/382 (45%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ + K + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 172/382 (45%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ + K + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 148/332 (44%), Gaps = 33/332 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLN 140
           P+    GK  Y +D +G +Y+D       +  GH HP++  +I    +  + + T   L 
Sbjct: 38  PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN--- 197
                FA+ L    P  L  V F NSGTEA    I +AR YTG   I      YHG+   
Sbjct: 98  ---VKFAKXLKEAXPA-LDKVRFVNSGTEAVXTTIRVARAYTGRTKIXKFAGCYHGHSDL 153
Query: 198 ---AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
              AAG+  +T  +     V Q+     +   P+  V         + +++ +D    GH
Sbjct: 154 VLVAAGSGPSTLGTPDSAGVPQSIAQEVITV-PFNNV---------ETLKEALD--KWGH 201
Query: 255 -VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFE 311
            VA  L E I G  GI+E  PG+L  V + + +AG L I DEV     F   G+     +
Sbjct: 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFXYGGAQ----D 257
Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV---LTRRNYFNTFGGNPVCTAAGHAVL 368
             GV PD+  +   IG G+P+GA     EI E    L       T  GNP   A+G A L
Sbjct: 258 LLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACL 317
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
           +V+Q++ L      +G+ L++ +     K+ I
Sbjct: 318 EVLQQEGLYEKLDELGATLEKGILEQAAKHNI 349

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHGN  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  F   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--FTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF  TG  F   E   + PDI+ + K + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGATGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF +TG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGKTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN +HG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 143/314 (45%), Gaps = 29/314 (9%)
Query: 72  SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131
           SP    +   P  V  G+  YL+  +G R +D       +  GH HP V++++   + R 
Sbjct: 29  SPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR- 87
Query: 132 QHSTVLYLNHAIADFAEALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTGCNDII 188
                 +L  A  +    LA K+ G +K   ++ F NSGTEA   AI +AR YTG + I+
Sbjct: 88  -----GWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLIL 142
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNV-VQTGVHHALNP----DPYRGVFGADGEMYAKDV 243
                YHG+    + A   +   + V    GV  A+       PY      D E   +  
Sbjct: 143 KFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVF 197
Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
            +  D      +AG + E +    G+I     +L A+ +  +++G L I DEV  GF   
Sbjct: 198 AEYGD-----RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG 252
Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFN--TFGGNPVC 360
                G+    +  DI+ + K IG G P+GAV  + E+  +LT +   FN  TF  +P+ 
Sbjct: 253 LEGAQGY--FNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPIT 310
Query: 361 TAAGHAVLKVIQKD 374
            AAG A LK ++++
Sbjct: 311 MAAGLATLKALEEE 324

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 38/365 (10%)
Query: 54  PYDGPSADEILAKRKTFL-----SP--SLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFG 106
           P+    +DEI A  +  +     SP  +   +  +P+     K  Y +D +G RY+D  G
Sbjct: 5   PFKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVG 64
Query: 107 GIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165
                 CGH HP V++++ V   K         L + +A   E +   +P ++++V F N
Sbjct: 65  TWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA---EMVNDAVP-SIEMVRFVN 120
Query: 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTMGATAQSNWKFNVVQTGV 219
           SGTEA    + + R YTG + II     YHG+A      AG+  AT        V +   
Sbjct: 121 SGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTT 180
Query: 220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPA 279
            + L   PY  +      ++A++          G +AG + E I G  G I    G+L  
Sbjct: 181 ANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILEPIVGNSGFIVPDAGFLEG 229
Query: 280 VYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 337
           + +   +   L + DEV  GF  A  G      E  GV PD+ T+ K IG G+P+GA   
Sbjct: 230 LREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDLTTLGKIIGGGLPVGAYGG 285
Query: 338 TPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
             EI +++          T  GNP+   AG   L+++++         +   L + L A+
Sbjct: 286 KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
Query: 395 KDKYG 399
             + G
Sbjct: 346 AQETG 350

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 38/365 (10%)
Query: 54  PYDGPSADEILAKRKTFL-----SP--SLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFG 106
           P+    +DEI A  +  +     SP  +   +  +P+     K  Y +D +G RY+D  G
Sbjct: 5   PFKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVG 64
Query: 107 GIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165
                 CGH HP V++++ V   K         L + +A   E +   +P ++++V F N
Sbjct: 65  TWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA---EMVNDAVP-SIEMVRFVN 120
Query: 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTMGATAQSNWKFNVVQTGV 219
           SGTEA    + + R YTG + II     YHG+A      AG+  AT        V +   
Sbjct: 121 SGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTT 180
Query: 220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPA 279
            + L   PY  +      ++A++          G +AG + E I G  G I    G+L  
Sbjct: 181 ANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILEPIVGNSGFIVPDAGFLEG 229
Query: 280 VYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 337
           + +   +   L + DEV  GF  A  G      E  GV PD+ T+ K IG G+P+GA   
Sbjct: 230 LREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDLTTLGKIIGGGLPVGAYGG 285
Query: 338 TPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
             EI +++          T  GNP+   AG   L+++++         +   L + L A+
Sbjct: 286 KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
Query: 395 KDKYG 399
             + G
Sbjct: 346 AQETG 350

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 139/311 (44%), Gaps = 44/311 (14%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V G+  Y++D +G RYLD       +  GH HP V+  +   ++R           
Sbjct: 35  PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG------LTFG 88
Query: 142 AIADFAEALASKMPGN---LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
           A +    ALA K+      + +V F NSGTEA   A+ +AR YTG   I+  R  YHG+A
Sbjct: 89  APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHA 148
Query: 199 AG----------TMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247
            G          T+G  + +       + T V    +P+  R V    GE          
Sbjct: 149 DGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGE---------- 198
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
                  +A  + E + G  G++     +L A++++ K  G L IADEV  GF      F
Sbjct: 199 ------EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA---F 248
Query: 308 WG-FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAA 363
            G  E  G+ PD+VT+ K +G G+P  A     EI E +          T  GNP+  AA
Sbjct: 249 GGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAA 308
Query: 364 GHAVLKVIQKD 374
           G A L++++++
Sbjct: 309 GLATLELLEEN 319

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
           K  Y +D +G RY+D  G      CGH HP V++++ V   K         L + +A   
Sbjct: 42  KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + + R YTG + II     YHG+A      AG+
Sbjct: 99  EMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +    + L   PY  +      ++A++          G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            I G  G I    G+L  + +   +   L + DEV  GF  A  G      E  GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
            T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++++   
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
                 +   L + L A+  + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
           K  Y +D +G RY+D  G      CGH HP V++++ V   K         L + +A   
Sbjct: 42  KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + + R YTG + II     YHG+A      AG+
Sbjct: 99  EMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +    + L   PY  +      ++A++          G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            I G  G I    G+L  + +   +   L + DEV  GF  A  G      E  GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
            T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++++   
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
                 +   L + L A+  + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
           K  Y +D +G RY+D  G      CGH HP V++++ V   K         L + +A   
Sbjct: 42  KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + + R YTG + II     YHG+A      AG+
Sbjct: 99  EMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +    + L   PY  +      ++A++          G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            I G  G I    G+L  + +   +   L + DEV  GF  A  G      E  GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
            T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++++   
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
                 +   L + L A+  + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 148/347 (42%), Gaps = 28/347 (8%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLYLN 140
           P+ +  GK   +FD +G  Y+D       +  GH +    D +V  +K++ ++ T     
Sbjct: 44  PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTN----DRVVESLKKVAEYGTSFGAP 99
Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
             +  + A+ +  ++P ++++V   +SGTEA   A+ +AR YTG N I+     YHG+  
Sbjct: 100 TEVENELAKLVIDRVP-SVEIVRMVSSGTEATMSALRLARGYTGRNKILKFEGCYHGHGD 158
Query: 200 GTMGATAQSNWKFNV-----VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
             +           +     V  G+       PY      D E      Q    FG    
Sbjct: 159 SLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYN-----DLESVKLAFQQ---FGED-- 208
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +AG + E + G  G++    G+L  +    ++ G L I DEV  GF    +   G+   G
Sbjct: 209 IAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCAQGY--FG 266
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVI 371
           V PD+  + K IG G+P+GA     EI E +          T  GNP+   AG   LK +
Sbjct: 267 VTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLKQL 326
Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
             D  +N     G  L+E ++   + +GI       G ++G  F  +
Sbjct: 327 TPDSYKNFIK-KGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFFTNE 372

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 139/341 (40%), Gaps = 33/341 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G+   L+D +G RY D          GH  P + D+++  ++      +    H
Sbjct: 70  PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQ----GGINLTGH 125
Query: 142 AIAD--FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
            + +   A  +  + P  ++ + FTNSGTEAN +A+  A  +TG   I+     YHG   
Sbjct: 126 NLLEGRLARLICERFP-QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVL 184
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
           G     + +   F+ +           PY     A  ++     +          +A  L
Sbjct: 185 GFGARPSPTTVPFDFLVL---------PYNDAQTARAQIERHGPE----------IAVVL 225
Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E +QG  G I   P +L A+ +S  + G L + DEV    +R   H    +  G+  D+
Sbjct: 226 VEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKL-GIRSDL 282
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDK 375
            T+ K IG G+  GA     ++  +   R     +  TF  N +  AAG+A L  +   +
Sbjct: 283 TTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE 342
Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
                   G  L+ RL AL    G+     G G L+   FV
Sbjct: 343 AAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFV 383

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 33/298 (11%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAE 148
           K  +++D +G +Y+D  G       GH HP V+D++   +++        L   I   AE
Sbjct: 26  KGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENI--LAE 83
Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTM 202
            + + +P ++++V F NSGTEA    + + R YT    +I     YHG+A      AG+ 
Sbjct: 84  MVIAAVP-SVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFLVKAGSG 142
Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG--EMYAKDVQDLIDFGTSGHVAGFLS 260
            AT        V +      L   PY  +       E Y  D            +AG + 
Sbjct: 143 VATLGLPDSPGVPKATTAATLT-APYNDLEAVSRLFEQYPND------------IAGVIL 189
Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPD 318
           E + G  G I    G+L  + +  K+ G L + DEV  GF  A  G+     E  GV PD
Sbjct: 190 EPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIAYGGAQ----EKFGVTPD 245
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQK 373
           + T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++ +
Sbjct: 246 LTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSR 303

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 133/336 (39%), Gaps = 58/336 (17%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +      YLFD +G+ Y+D  G       GH HP +  +++  ++R        L+ 
Sbjct: 36  PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEAVER-------GLSF 88
Query: 142 AIADFAEALASKMPGNL----KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197
                 E   +++  +L      V   NSGTEA   AI +AR YTG + II     YHG+
Sbjct: 89  GAPTEXEVKXAQLVTDLVPTXDXVRXVNSGTEATXSAIRLARGYTGRDKIIKFEGCYHGH 148
Query: 198 A------AGTMGATAQSNWKFNVVQTGVHHAL-----NPDPYRGVFGADGEMYAKDVQDL 246
           A      AG+   T        V      H L     +    R  F    E Y ++    
Sbjct: 149 ADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAF----EQYPQE---- 200
Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTG 304
                   VA  + E + G    I   P +LP +     + G L I DEV  GF  A  G
Sbjct: 201 --------VACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGFRVALAG 252
Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCT 361
           +  +    + V+PD+  + K IG G P+GA     E+   L          T  GNP+  
Sbjct: 253 AQDY----YHVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAX 308
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK 397
           AAG A L  I +         VG Y  E LT L D 
Sbjct: 309 AAGFACLTEISQ---------VGVY--ETLTELTDS 333

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 130/324 (40%), Gaps = 35/324 (10%)
Query: 75  LFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           LFH    PL +  G      D +G  Y++  G       GH HP +  ++   +    + 
Sbjct: 77  LFH-RPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNL 135
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
           +    N A+  FAEA+  + P ++ +V FTNSGTEAN +A+  A   TG   +++    Y
Sbjct: 136 STQTENEAL--FAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGY 192
Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSG 253
           HG         A +N  ++VV              GV+         DV+   D     G
Sbjct: 193 HGGLLNFASGHAPTNAPYHVVL-------------GVY--------NDVEGTADLLKRHG 231
Query: 254 H-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
           H  A  L E + G GG +     +L  +     + G L I DEV       G      E 
Sbjct: 232 HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG---AQEM 288
Query: 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL--TRRNYF---NTFGGNPVCTAAGHAV 367
            G+  D+ T+ K IG G+  GA     ++ E     R   F    TF  N +  +AGHA 
Sbjct: 289 LGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348
Query: 368 LKVIQKDKLQNNAHVVGSYLKERL 391
           L  I   +  ++    G   +  L
Sbjct: 349 LTQIYTRQAASDLSASGDRFRANL 372

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 156/384 (40%), Gaps = 54/384 (14%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLYLN 140
           PL    GK   ++D +G  Y+D       +  GH +    D +V  +K + +  T     
Sbjct: 36  PLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHAN----DRVVEALKAVAERGTSFGAP 91
Query: 141 HAIAD-FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG--- 196
             I +  A+ +  ++P ++++V   NSGTEA   A+ +AR YTG N I+     YHG   
Sbjct: 92  TEIENKLAKLVIERVP-SIEIVRXVNSGTEATXSALRLARGYTGRNKILKFIGCYHGHGD 150
Query: 197 -------NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
                  +   T+G          V +  +  A N          D E      +   D 
Sbjct: 151 SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN----------DLESVKYAFEQFGD- 199
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
                +A  + E + G  G++   PG+L  + +  ++ G L I DEV  GF    +   G
Sbjct: 200 ----DIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNCGQG 255
Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHA 366
           +  +GV PD+  + K IG G+P+GA     EI   +          T  GNP+  AAG+ 
Sbjct: 256 Y--YGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYE 313
Query: 367 VLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
            L  +  +   + +  A      L+  L    +K+GI   +   G  +G+ F TD     
Sbjct: 314 TLVQLTPESYVEFERKAEX----LEAGLRKAAEKHGIPHHINRAGSXIGI-FFTD----- 363
Query: 424 PAKAETLYIMDKMKGICALFFSQY 447
               E +   D  K     FF+ Y
Sbjct: 364 ----EPVINYDAAKSSNLQFFAAY 383

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 157/371 (42%), Gaps = 48/371 (12%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE----VLTR 347
            DEVQ G   TG+  W ++   V PDIV   K     G+  G  V   E+A+    V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
            N  +T+GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D RG
Sbjct: 327 LN--STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVT 417
           RG +      T
Sbjct: 385 RGLMCAFSLPT 395

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 155/371 (41%), Gaps = 48/371 (12%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK-----GIGNGIPLGAVVTTPEIAEVLTR 347
            DEVQ G   TG+  W ++   V PDIV   K     G+  G  +  V     +  V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN--VFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
            N  +T+GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D RG
Sbjct: 327 LN--STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVT 417
           RG +      T
Sbjct: 385 RGLMCAFSLPT 395

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 159/409 (38%), Gaps = 58/409 (14%)
Query: 48  FDYSPP----PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLD 103
           FDY  P       GP + E++ +     +    H +    N  + +  YL D +G R LD
Sbjct: 11  FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFC---NYEESRGNYLVDVDGNRMLD 67
Query: 104 AFGGIATVCCGHCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGN 157
            +  I+++  G+ HP +V  +V Q + +          +L   + +    E+L S  P  
Sbjct: 68  LYSQISSIPIGYSHPALV-KLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG 126
Query: 158 LKVVFFTNSGTEANE------------------------LAIMMARLYTGCND--IISLR 191
           +  +     G+ +NE                        L   M     GC D  I+S  
Sbjct: 127 MSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFM 186
Query: 192 NAYHGNAAGTMGAT-AQSNWKFNVVQTGVHHALNPD---PYRGVFGADGEMYAKDVQDLI 247
            A+HG   G +  T +++  K ++       A  P    P       + +  A+ ++++ 
Sbjct: 187 GAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVE 246
Query: 248 DF-----GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           D           VAG + E IQ  GG    +  +   +    +K G   + DEVQ G   
Sbjct: 247 DLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS 306
Query: 303 TGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           TG  FW  E  G+    D++T +K +  G         P     +     FNT+ G+P  
Sbjct: 307 TGK-FWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-----FNTWLGDPSK 360
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRG 408
                 V+ +I+++ L +NA   G  L   L  L+ +Y   I  VRGRG
Sbjct: 361 NLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRG 409

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 155/371 (41%), Gaps = 48/371 (12%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK-----GIGNGIPLGAVVTTPEIAEVLTR 347
            DEVQ G   TG+  W ++   V PDIV   K     G+  G  +  V     +  V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN--VFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
            N  +++GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D RG
Sbjct: 327 LN--SSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVT 417
           RG +      T
Sbjct: 385 RGLMCAFSLPT 395

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 153/373 (41%), Gaps = 52/373 (13%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF- 351
            DEVQ G   TG+  W ++   V PDIV      G    +  V+    + EV    N F 
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIV----AFGKKTQVCGVMAGRRVDEVAD--NVFA 322
Query: 352 ------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDV 404
                 +T+GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D 
Sbjct: 323 VPSRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP 382
Query: 405 RGRGFLLGVEFVT 417
           RGRG +      T
Sbjct: 383 RGRGLMCAFSLPT 395

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 126/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKV 160
           LDA     T   GH HP +  ++  Q++ + H     L H   A  A+ L    P  L  
Sbjct: 78  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 137
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
           VFF++SG+ + E+A  MA  Y       G   +++ R  YHG+    M          S 
Sbjct: 138 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
           W  +V+   V     P  Y   + A  E  A+  Q       +G +A  + E + QG GG
Sbjct: 198 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 248
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
           +    P YL  +    ++   L I DE+  GF RTG+ F    A GV PDI+ + K +  
Sbjct: 249 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 307
Query: 329 G-IPLGAVVTTPEIAEVLT-----RRNYFNTFGGNPVCTAAGHAVLKVI 371
           G + L A + T ++A  ++        +  TF  NP+  A   A ++++
Sbjct: 308 GYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELL 356

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGNLKV 160
           LDA     T   GH HP +  ++  Q++ + H     L H   A  A+ L    P  L  
Sbjct: 83  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 142
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
           VFF++SG+ + E+A  MA  Y       G   +++ R  YHG+    M          S 
Sbjct: 143 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 202
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
           W  +V+   V     P  Y   + A  E  A+  Q       +G +A  + E + QG GG
Sbjct: 203 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 253
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
           +    P YL  +    ++   L I DE+  GF RTG+ F    A GV PDI+ + K +  
Sbjct: 254 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 312
Query: 329 G-IPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAVLKVI 371
           G + L A + T ++A  ++           TF  NP+  A   A ++++
Sbjct: 313 GYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELL 361

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKV 160
           LDA     T   GH HP +  ++  Q++ + H     L H   A  A+ L    P  L  
Sbjct: 58  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 117
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
           VFF++SG+ + E+A  MA  Y       G   +++ R  YHG+    M          S 
Sbjct: 118 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 177
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
           W  +V+   V     P  Y   + A  E  A+  Q       +G +A  + E + QG GG
Sbjct: 178 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 228
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
           +    P YL  +    ++   L I DE+  GF RTG+ F    A GV PDI+ + K +  
Sbjct: 229 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 287
Query: 329 G-IPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAVLKVI 371
           G + L A + T ++A  ++           TF  NP+  A   A ++++
Sbjct: 288 GYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELL 336

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 152/331 (45%), Gaps = 34/331 (10%)
Query: 83  LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
           L + D +  +  D +G  YLD FGG   +  GH HP V  +I    + + H      +H 
Sbjct: 41  LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIA---EALSHGVQYAASHP 97
Query: 143 I-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
           +   +AE + +  P +++ + FT SGTE   LA+ +AR +TG   I+     YHG     
Sbjct: 98  LEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHG----- 151
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE----MYAKDVQDLID-FGTSG-HV 255
                   W  +   +G +   +  P  GV          +   D++ + + F   G  +
Sbjct: 152 --------WH-DFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDI 202
Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HG 314
           A F++E +    G+  ++  +L    +  ++ G L I DEV +GF R G+H  G +A   
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH--GMQALLD 259
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLK 369
           V PD+  +AK    G+P G +    ++  VL+R +     +  TF GNP+  AA  A + 
Sbjct: 260 VQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID 319
Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
            I +D +    + +G + +E +  L  + G+
Sbjct: 320 TILEDDVCAKINDLGQFAREAMNHLFARKGL 350

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 98/264 (37%), Gaps = 70/264 (26%)
Query: 161 VFFTNSGTEANELAIMMARLYTGCND----------------IISLRNAYHGNAAGTMGA 204
           V+F+++G+ A E+A+ MA     C D                +I+LR +YHG+  G M A
Sbjct: 445 VYFSDNGSTAIEIALKMA-FRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEA 503
Query: 205 TAQSNWKFNVVQ---TGVHHALNPD---------------------PYRGVFGADGEMY- 239
            A S +   + Q   TG    L+P                      P  G F +  E++ 
Sbjct: 504 QAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFD 563
Query: 240 ----------------AKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYK 282
                           +K +Q+      S HV   + E  I G GG+  + P +   +  
Sbjct: 564 KSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVN 623
Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEI 341
             +      I DEV  GF R G      E  G  PDI   AK +  G +PL   + T  +
Sbjct: 624 ECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGMVPLAVTLATDAV 682
Query: 342 AEVLTRRNYFNTFGGNPVCTAAGH 365
                    F++F G+    A  H
Sbjct: 683 ---------FDSFSGDSKLKALLH 697

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-176
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	1e-170
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	1e-136
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-133
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	1e-128
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-106
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	1e-104
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	1e-103
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	1e-101
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	1e-101
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-100
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	8e-99
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	6e-98
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	2e-96
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	4e-96
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	1e-95
3hmu_A	472	Aminotransferase, class III; structural genomics,	2e-94
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	8e-94
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-93
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	1e-93
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	1e-92
1z7d_A	433	Ornithine aminotransferase; structural genomics co	1e-91
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	1e-87
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	2e-87
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	4e-81
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	8e-68
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	7e-63
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-50
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	3e-36
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	1e-34
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	4e-29
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	7e-29
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	2e-28
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	1e-27
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	4e-27
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	4e-26
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	6e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  499 bits (1287), Expect = e-176
 Identities = 129/383 (33%), Positives = 184/383 (48%), Gaps = 10/383 (2%)

Query: 62  EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVV 121
                 +  L          P+ +   K  +++D +GR  LD   G  +   GHCHP +V
Sbjct: 8   TFWRNARHHLVRYGGTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIV 65

Query: 122 DSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY 181
             I     ++ H     L+  + D A  LA+  P  L      ++G E+NE AI MA+L 
Sbjct: 66  SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV 125

Query: 182 TGCNDIISLRNAYHGNAAGTMGATAQSNWK-FNVVQTGVHHALNPDPYRGVFGADGE--- 237
           TG  +I+    ++HG       AT  +  K       G      P  YR  F  +G    
Sbjct: 126 TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDY 185

Query: 238 -MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
                   DLID  +SG++A F++E I   GGIIEL  GY+ A+ +  +  G L I DE 
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA 245

Query: 297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTF 354
           Q G  RTG   +  +  GV PDI+T++K +G G+PL A+VT+  I E      Y  + T 
Sbjct: 246 QTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTH 304

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
             +P+  A G  VL V+Q+D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE
Sbjct: 305 VSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE 364

Query: 415 FVTDRQLKTPAKAETLYIMDKMK 437
            V DR+ K PA      I  +  
Sbjct: 365 IVKDRRTKEPADGLGAKITRECM 387

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  484 bits (1248), Expect = e-170
 Identities = 118/385 (30%), Positives = 181/385 (47%), Gaps = 7/385 (1%)

Query: 57  GPS-ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           G      +  +    +       +  PL +  G+   L +ENGR  +D  G       G+
Sbjct: 1   GSHMTKALYDRDGAAIGNLQKLRFF-PLAISGGRGARLIEENGRELIDLSGAWGAASLGY 59

Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGN-LKVVFFTNSGTEANEL 173
            HP +V ++         +T+L  ++A     AE L +  PG     ++F +SG++ANE 
Sbjct: 60  GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEA 119

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG 233
           A       TG + +I+   AYHG   G+M  +  S         G+     PDPYR    
Sbjct: 120 AYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRN 179

Query: 234 -ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
              G+     + + +    +G +     E IQ  GG+I    G+L       +  G L +
Sbjct: 180 DPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVV 239

Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN 352
            DEV+ G AR+G     FE  G VPDI+ + KG+G G+PL AV+   EI +  +      
Sbjct: 240 CDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQ 297

Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T  GNP+  AAG AVL+ I +D L   A   G  L++ L+ L  ++ +IGD+RGRG   G
Sbjct: 298 TLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACG 357

Query: 413 VEFVTDRQLKTPAKAETLYIMDKMK 437
           +E V DRQ + PA+AET  ++ +  
Sbjct: 358 MELVCDRQSREPARAETAKLIYRAY 382

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  398 bits (1024), Expect = e-136
 Identities = 137/410 (33%), Positives = 196/410 (47%), Gaps = 13/410 (3%)

Query: 33  SSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQY 92
            S+++    L +        P   GP +  +  +R+  +S  +      P+  VD     
Sbjct: 3   GSMTDITYRLAQKRTIVTPLP---GPRSGALAERRRAAVSAGVGSTA--PVYAVDADGGV 57

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALA 151
           + D +G  ++D   GIA    G  HP V  +I +Q     H+  +   +      AE L 
Sbjct: 58  IVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLN 117

Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210
           +  PG+  K     NSG EA E AI +ARL TG   +++  NAYHG    TM  TA+S  
Sbjct: 118 ALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMP 177

Query: 211 ---KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSGHVAGFLSESIQGV 266
              +F      V+      P R   G  GE  A+     I+    +  +A  + E IQG 
Sbjct: 178 YKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGE 237

Query: 267 GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI 326
           GG I  APG+L  +     + G + IADEVQ GFARTG  ++  E  G+VPDIVTMAKGI
Sbjct: 238 GGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGI 296

Query: 327 GNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY 386
             G+PL AV    E+ + +       T+GGNPV  AA  A L V+++  L   A  + + 
Sbjct: 297 AGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEAS 356

Query: 387 LKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM 436
           +  RL+AL ++  IIG+VRGRG +L +E V       P  A T  I  + 
Sbjct: 357 VTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGT-LEPDAALTKSIAAEA 405

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  389 bits (1002), Expect = e-133
 Identities = 119/413 (28%), Positives = 184/413 (44%), Gaps = 18/413 (4%)

Query: 36  SEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFD 95
               +   +      + P   GP +  ++ ++ T ++  +      P+  V      + D
Sbjct: 3   GSMVSHPEQSRHLATAIP---GPRSQALIDRKGTAVARGVGTTM--PVYAVRAGGGIVED 57

Query: 96  ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM 154
            +G R +D   GIA    G+  P VV+++ +Q+    H+  +   +       E L    
Sbjct: 58  VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLT 117

Query: 155 PGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW--- 210
           P    K     NSG+EA E A+ +AR +T    +++  +AYHG    TM  TA+      
Sbjct: 118 PVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177

Query: 211 KFNVVQTGVHHALNPDPYRGVFG-----ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQ 264
            F      ++ A    P+R          DGE+ AK    +ID       +A  + E IQ
Sbjct: 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQ 237

Query: 265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK 324
           G GG I  A G+LP +    +K   + IADEVQ GFARTG   +  E  G+ PD++  AK
Sbjct: 238 GEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAK 296

Query: 325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG 384
           GI  G+PL AV    EI +         T+GGNP+  AA  A ++ I+ + L   A  + 
Sbjct: 297 GIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIE 356

Query: 385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
             +K+RL  L+ +   IGDVRGRG ++ +E V       P    T  +     
Sbjct: 357 KIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGT-TEPDADLTKALCAGAH 408

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  376 bits (968), Expect = e-128
 Identities = 113/383 (29%), Positives = 181/383 (47%), Gaps = 10/383 (2%)

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  E++ +R   +   +  ++  P+     +   ++D  GR YLD  GGIA +  GH HP
Sbjct: 3   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60

Query: 119 YVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNL-KVVFFTNSGTEANELAIM 176
            VV ++  Q+K++ H+    L +    +  E +  K+PG+  K      +G+EA E A+ 
Sbjct: 61  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW---KFNVVQTGVHHALNPDPYRGVFG 233
           +AR  T  +  I+   AYHG    T+  T + N       ++   V+ AL P P  G+  
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D       +    +      +A  + E +QG GG    +P ++  +     + G + IA
Sbjct: 181 DDAIASIHRI--FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNT 353
           DEVQ+G  RTG   +  E  GV PD+ T AK I  G PL  V    E+ + +       T
Sbjct: 239 DEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297

Query: 354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV 413
           + GNP+   A   VLKV +++ L   A+ +G  LK+ L A+ +K+  IGDVRG G ++ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357

Query: 414 EFVTDRQLKTPAKAETLYIMDKM 436
           E   D     P    T  I+ + 
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARA 380

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  321 bits (826), Expect = e-106
 Identities = 115/366 (31%), Positives = 178/366 (48%), Gaps = 21/366 (5%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
                  +  ++ D  G+RYLD   G+  V  G+    + ++   Q++ + +  +   + 
Sbjct: 32  TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHE 91

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYH 195
                AE L   + G   + FF+NSG+EANE A  +AR Y            +S    YH
Sbjct: 92  PAIKLAEKLNEWLGGEYVI-FFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYH 150

Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDF 249
           GN   TM AT Q+  +  +    +G  H   PD YR        +Y     K+V  ++ +
Sbjct: 151 GNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTW 210

Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
             S  +A F+ E I   GGI+     Y+ AV+++ +K G L I+DEV  GF RTG   +G
Sbjct: 211 ELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KAFG 269

Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL---TRRNYFN---TFGGNPVCTA 362
           F  + V PDI+TMAKGI +  +PL A     EI E         +F    TFGGNP   A
Sbjct: 270 FMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACA 329

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
                L++I+ + L   +  +GS L E+L     ++ ++GD+RG+G L+G+E V D++ K
Sbjct: 330 LALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389

Query: 423 TPAKAE 428
            P   +
Sbjct: 390 EPIDND 395

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  313 bits (805), Expect = e-104
 Identities = 105/344 (30%), Positives = 170/344 (49%), Gaps = 23/344 (6%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
              +Y+K  L +V G+   ++D  G  Y+D  GG      GH +P VV+++  Q + +  
Sbjct: 20  DSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA 79

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193
                      +F   L + +P  L  VF  NSGTEANE A+  AR +TG    ++    
Sbjct: 80  MPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRG 139

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251
           + G   G++  T +  ++  F  +   V       PY        ++ A  ++  +D   
Sbjct: 140 FSGRTMGSLSVTWEPKYREPFLPLVEPVEFI----PY-------NDVEA--LKRAVD--- 183

Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
               A  + E +QG GG+    P +L A  +  ++ G L I DE+Q G  RTG   + FE
Sbjct: 184 -EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-KRFAFE 241

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
             G+VPDI+T+AK +G G+PLG  V   E+A  + +  +  TFGGNP+  AAG A ++ +
Sbjct: 242 HFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 301

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           ++ +L   A  +G +  E+L A+      I +VRG G ++G+E 
Sbjct: 302 ERTRLWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLEL 343

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  311 bits (800), Expect = e-103
 Identities = 113/378 (29%), Positives = 177/378 (46%), Gaps = 29/378 (7%)

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCH 117
            + +I+ +   +L+ S       PL +  G+  +++D +G +YLD   GI     G   H
Sbjct: 2   LSRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSH 61

Query: 118 PYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAI 175
           P V+   + Q++++ H +   + N    + A+ L +  PGN  K VFF+NSGTEA E +I
Sbjct: 62  PEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121

Query: 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK---FNVVQTGVHHALNPDPYRGVF 232
            + +  TG   II+    +HG   G++  TA    +         GV H   P+PYR  +
Sbjct: 122 KVVK-NTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPW 180

Query: 233 GADGEMYAKD-VQDLIDF---------GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
             +G     + V  +I+F              VAG   E IQG GG +     +   + K
Sbjct: 181 HINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEI 341
             KK G L + DEVQ G  RTG   +  E    VPD++T+AK +G GI P+GA +   ++
Sbjct: 241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL 299

Query: 342 AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII 401
                   + NTFGGN +  A G  V+ +++   L  + + +G    E L  L       
Sbjct: 300 D--FKPGMHSNTFGGNALACAIGSKVIDIVK--DLLPHVNEIGKIFAEELQGL------A 349

Query: 402 GDVRGRGFLLGVEFVTDR 419
            DVRG G   G+E+   +
Sbjct: 350 DDVRGIGLAWGLEYNEKK 367

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  308 bits (791), Expect = e-101
 Identities = 107/370 (28%), Positives = 172/370 (46%), Gaps = 24/370 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--QHSTVLYL 139
              +  G+   ++D NGR+ +DAF G+  V  G+    + D+I  Q K +   H+ V + 
Sbjct: 34  TRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHG 93

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
             A    A+ +  + P  +  V+F  SG++ANE  I +   Y    G  +   IIS    
Sbjct: 94  TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRG 153

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKDVQDL 246
           YHG+   T   T    +   F++ +  V H   P  +R        E +    A  ++++
Sbjct: 154 YHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEM 213

Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
           I       +A F+ E I G GGI+    GY   +   +KK   L +ADEV  GF R G  
Sbjct: 214 ILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-T 272

Query: 307 FWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN---TFGGNP 358
            +G + +G+ PD++T+AKG+ +   PL  V+    + +VL     +        T+  +P
Sbjct: 273 MFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHP 332

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +C AAG A L++I +  L  NA   G+Y +  L      +  +G+VRG G L  VEFV D
Sbjct: 333 ICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVAD 392

Query: 419 RQLKTPAKAE 428
           +  +    A 
Sbjct: 393 KDDRVFFDAS 402

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  308 bits (792), Expect = e-101
 Identities = 109/370 (29%), Positives = 168/370 (45%), Gaps = 24/370 (6%)

Query: 77  HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHST 135
                 + V  G+  Y+ D NGRRYLDA  G+  +  G  H  ++D+   Q +R   +  
Sbjct: 39  LHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA 98

Query: 136 VLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---II 188
                       +E L    P +   VF+TNSG+EAN+  + M        G      I+
Sbjct: 99  FFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKIL 158

Query: 189 SLRNAYHGNAAGTMGATAQSNWK-FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKD 242
           +  NAYHG  A +   T +     F +   G  H   P  +R G  G   E +    A++
Sbjct: 159 TRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARE 218

Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           +++ I    +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF R
Sbjct: 219 LEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 278

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN---TF 354
           TG + WG   +   PD +  +K +  G  P+GAV+  PE+++ L         F    T 
Sbjct: 279 TG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTA 337

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
            G+PV  A     + V+  + L  N   +    +ERL  + +    IG+ RG GF+  +E
Sbjct: 338 SGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALE 396

Query: 415 FVTDRQLKTP 424
            V D+  KTP
Sbjct: 397 AVKDKASKTP 406

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  305 bits (783), Expect = e-100
 Identities = 107/369 (28%), Positives = 172/369 (46%), Gaps = 30/369 (8%)

Query: 59  SADEILAKRKTFLSPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           + ++    R TF    +  +Y+      V GK   ++D+ G+ Y+D  GGIA    GHCH
Sbjct: 17  ATEQTAITRATF-DEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCH 75

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q + + H++ ++ N         L          V F NSGTEANE A  +
Sbjct: 76  PALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAE--RVLFMNSGTEANETAFKL 133

Query: 178 ARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR 229
           AR Y           II+  NA+HG +  T+    Q  +   F      + H     P+ 
Sbjct: 134 ARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHV----PF- 188

Query: 230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289
                  +++A  V+ ++D     H    + E IQG GG+    P +L  +     +   
Sbjct: 189 ------NDLHA--VKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQA 236

Query: 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN 349
           L + DEVQ G  RTG   + +  +GV PDI+T AK +G G P+ A++TT EIA      +
Sbjct: 237 LLVFDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGS 295

Query: 350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
           + +T+GGNP+  A   A   +I   ++    H       + L A+ +++ I  D+RG G 
Sbjct: 296 HGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGL 355

Query: 410 LLGVEFVTD 418
           L+G E    
Sbjct: 356 LIGAELKPK 364

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  300 bits (771), Expect = 8e-99
 Identities = 118/356 (33%), Positives = 182/356 (51%), Gaps = 33/356 (9%)

Query: 73  PSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131
             L + YS  P   V GK  +++DE G  YLD   GIA    GH HP +V++I +Q +++
Sbjct: 13  MYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL 72

Query: 132 QHSTVLYLNHAIADFAEAL--ASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGC 184
            H + L+ N    + AE L   +        VFF N+GTEANE AI +AR Y        
Sbjct: 73  IHCSNLFWNRPQMELAELLSKNTFG----GKVFFANTGTEANEAAIKIARKYGKKKSEKK 128

Query: 185 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242
             I+S  N++HG   G++ AT Q  ++  F  +  G  +      +  V         +D
Sbjct: 129 YRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYF----EFNNV---------ED 175

Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           ++  +       V     E IQG  GI+     +L    K   +   L + DEVQ G  R
Sbjct: 176 LRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
           TG   + ++ +GVVPD++T AKG+G G+P+GAV+   E A VL   ++  TFGGNP+   
Sbjct: 232 TG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACR 289

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           AG  V+K + K+         G+YL ++L  +K++Y ++ DVRG G ++G++F  +
Sbjct: 290 AGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREE 345

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  298 bits (765), Expect = 6e-98
 Identities = 103/356 (28%), Positives = 173/356 (48%), Gaps = 29/356 (8%)

Query: 72  SPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
              +   Y    + +  G+  YLFD+  ++YLD   GI     G+ H      I  Q+ +
Sbjct: 8   QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDK 67

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCN 185
           + H++ LY N  IA  A+ LA      L+ VFFTNSGTE+ E A+  AR Y         
Sbjct: 68  LLHTSNLYYNENIAAAAKNLAKA--SALERVFFTNSGTESIEGAMKTARKYAFNKGVKGG 125

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243
             I+ ++++HG   G +  TA   ++  F  + +GV  A     Y  +           V
Sbjct: 126 QFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFA----KYNDI---------SSV 172

Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
           + L++          + ES+QG GGI      +  A+ K   +   L IADE+Q G  R+
Sbjct: 173 EKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRS 228

Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAE-VLTRRNYFNTFGGNPVCTA 362
           G  F+ +E   ++PDI+T AK +G G+ +GA V   ++A   L   ++ +T+GGNP+  A
Sbjct: 229 G-KFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCA 287

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
             +AV ++ +++K+  N + +  YL++ L  L +++      +G GF+ G+     
Sbjct: 288 GVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKS 343

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  296 bits (760), Expect = 2e-96
 Identities = 99/366 (27%), Positives = 164/366 (44%), Gaps = 20/366 (5%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLN 140
              +  G+  YL+D  G + +D   G+  V  G+      ++   Q++ +   +T     
Sbjct: 33  ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTT 92

Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
           H    + +  LA   P     VF+TNSG+E+ +  I M R Y    G  +   +I   N 
Sbjct: 93  HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNG 152

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 247
           YHG+  G              ++   G+ H   P  Y+          G + A+ +++ I
Sbjct: 153 YHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKI 212

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
               +  VA F+ E IQG GG+I     Y P + +  +K   L +ADEV  GF RTG  +
Sbjct: 213 LEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EW 271

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---TFGGNPVCTAA 363
           +G +  G  PD+ T AKG+ +G +P+GAV     +AE L     FN   T+ G+PVC A 
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331

Query: 364 GHAVLKVIQKDKL-QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
            HA +  ++ + + Q     +G Y+++R      ++  + DVRG G +     V ++  +
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR 391

Query: 423 TPAKAE 428
                 
Sbjct: 392 ELFPDF 397

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  292 bits (751), Expect = 4e-96
 Identities = 116/352 (32%), Positives = 178/352 (50%), Gaps = 34/352 (9%)

Query: 75  LFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L + Y+  P+  V GK  YL+DE G+ YLD   GI     GH +P + +++  Q++++ H
Sbjct: 3   LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDII 188
            + LY N    + A  L        K VFF NSGTE+ E AI +AR Y           I
Sbjct: 63  VSNLYENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLARKYWRDKGKNKWKFI 121

Query: 189 SLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246
           S  N++HG   G++ AT Q  +   F  +  G  +A        +           V  L
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYA----KLNDI---------DSVYKL 168

Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
           +D       AG + E IQG GG+ E +  +L  + +  K+   L I DEVQ G  RTG  
Sbjct: 169 LD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE- 223

Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366
           F+ ++   + PD++ +AKG+G G+P+GA++   E+A+  T  ++ +TFGGNP+   AG  
Sbjct: 224 FYAYQHFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTV 283

Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           V+  +  +KL  +   VG+Y KE+L  L         V+GRG +LG+E   +
Sbjct: 284 VVDEV--EKLLPHVREVGNYFKEKLKELGKG-----KVKGRGLMLGLELERE 328

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  294 bits (754), Expect = 1e-95
 Identities = 93/398 (23%), Positives = 142/398 (35%), Gaps = 31/398 (7%)

Query: 46  PPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDE-NGRRYLDA 104
                        + D +       +      +    L++      YL D   GRRYLD 
Sbjct: 3   AVVKSVALAGRPTTPDRVHEVLGRSMLVDGLDI---VLDLTRSGGSYLVDAITGRRYLDM 59

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-----HAIADFAEALASKMPGN-L 158
           F  +A+   G   P +VD      + +Q +     N      A+A F E  A  +    L
Sbjct: 60  FTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPAL 119

Query: 159 KVVFFTNSGTEANELAIMMARLYTGCND------------IISLRNAYHGNAAGTMGATA 206
             +FF   G  A E A+  A  +   ++            ++ LR A+HG +  T+  T 
Sbjct: 120 PHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTN 179

Query: 207 QSNWK---FNVVQTGVHHA--LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
                   F         A  + P        A      +  +   +      +A F++E
Sbjct: 180 TKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFE-TRPHDIACFVAE 238

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            IQG GG     P +  A+ +   +   L I DEVQ G   TG   W ++   V PDIV 
Sbjct: 239 PIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVA 297

Query: 322 MAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
             K     G+  G  V               +T+GGN         +L+VI+ + L   A
Sbjct: 298 FGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERA 357

Query: 381 HVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVT 417
              G YL+ RL  L   +  ++ D RGRG +      T
Sbjct: 358 VQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT 395

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  291 bits (748), Expect = 2e-94
 Identities = 103/376 (27%), Positives = 180/376 (47%), Gaps = 19/376 (5%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLN 140
              +   +  +L D  G   LDA  G+  V  G+    + +    Q++ + + +T     
Sbjct: 38  TRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTT 97

Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
           H  A   A+ LA   PG+L  VFF   G+EAN+  I M R Y    G  +   IIS +NA
Sbjct: 98  HVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNA 157

Query: 194 YHGNAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLID 248
           YHG+   +      +     + +   VHH   P+ +      D E +    A+++++ I 
Sbjct: 158 YHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAIL 217

Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                 VA F++E +QG GG+I     Y P + +   K   L IADEV  GF RTG +++
Sbjct: 218 ELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWF 276

Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGH 365
           G +  G+ P I+T+AKG+ +G  P+G  +   E+A V+ +  +    T+ G+PV  A   
Sbjct: 277 GTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVAL 336

Query: 366 AVLKVIQKDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
             L++++++ + ++   V + YLKE+  AL D + ++G+ +  G +  +    ++  +  
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEALTD-HPLVGEAKIVGMMASIALTPNKASRAK 395

Query: 425 AKAETLYIMDKMKGIC 440
             +E   I    +  C
Sbjct: 396 FASEPGTIGYICRERC 411

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  289 bits (742), Expect = 8e-94
 Identities = 93/371 (25%), Positives = 156/371 (42%), Gaps = 26/371 (7%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V  +  +L D+ GR+  D+  G+ T   GH    + +++  Q+  + +S      H
Sbjct: 33  PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNAY 194
            ++   AE +    PGNL  VFFT+SG+E    A+ M R Y    G      +I     Y
Sbjct: 93  PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGY 152

Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGAD-----GEMYAKDVQDLI 247
           HG           +  +  F      V H  +       +        G   A ++  LI
Sbjct: 153 HGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
           +   + ++A    E + G  G++    GYL    +   +   L + DEV  GF RTG   
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SM 271

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---------TFGGN 357
           +G ++ GV PD++ +AK + NG IP+GAV+ + EI +    +             T+  +
Sbjct: 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
           PV  AAG A L ++QK+ L  +   V  + ++ L  +K     + D+R  G    ++   
Sbjct: 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKG-AKNVIDIRNFGLAGAIQIAP 390

Query: 418 DRQLKTPAKAE 428
                     E
Sbjct: 391 RDGDAIVRPFE 401

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  289 bits (742), Expect = 1e-93
 Identities = 95/422 (22%), Positives = 151/422 (35%), Gaps = 60/422 (14%)

Query: 46  PPFDYSPP------PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGR 99
             FDY  P      P  GP + E++ +     +    H      N  + +  YL D +G 
Sbjct: 9   VEFDYDGPLMKTEVP--GPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVDVDGN 63

Query: 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-----TVLYLNHAIADFAEALASKM 154
           R LD +  I+++  G+ HP +V  +                +L   + +    E+L S  
Sbjct: 64  RMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 123

Query: 155 PGNLKVVFFTNSGTEANELAIMMARLYT------------------------GCND--II 188
           P  +  +     G+ +NE A     ++                         GC D  I+
Sbjct: 124 PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSIL 183

Query: 189 SLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNPDPYRGVFGADGEMYA-K 241
           S   A+HG   G +  T            F+           P           E    +
Sbjct: 184 SFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLE 243

Query: 242 DVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
           +V+DLI         VAG + E IQ  GG    +  +   +    +K G   + DEVQ G
Sbjct: 244 EVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTG 303

Query: 300 FARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN 357
              TG  FW  E  G+    D++T +K +  G         P     +     FNT+ G+
Sbjct: 304 GGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-----FNTWLGD 357

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFV 416
           P        V+ +I+++ L +NA   G  L   L  L+ +Y   I  VRGRG     +  
Sbjct: 358 PSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP 417

Query: 417 TD 418
            +
Sbjct: 418 DE 419

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  288 bits (739), Expect = 1e-93
 Identities = 104/376 (27%), Positives = 169/376 (44%), Gaps = 26/376 (6%)

Query: 74  SLFHLYSKPLNVVD-GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
           ++F+  SKP  V   G+  +L+D+ GRRYLD   G      GH    V + +  Q  R+ 
Sbjct: 3   NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP 62

Query: 133 HSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND----- 186
                  +  +  ++A  LA  +       +  + G+EA E A+ +AR Y          
Sbjct: 63  FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF 122

Query: 187 -IISLRNAYHGNAAGTMGATAQSNWKFN----VVQTGVHHALNPDPYRGVFGADGEMYAK 241
            +I+   +YHG + G++ A+     +      +          PDP R   GA+    A+
Sbjct: 123 KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR--NGAE---DAE 177

Query: 242 DVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
            ++ L++      VA F++E + G     +  APGY   V     +AG + IADEV +G 
Sbjct: 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGM 237

Query: 301 ARTGSHFWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-NYFN---TF 354
            R GS         GV PDI  + KG+  G  PL  ++  P++ E +      F    T+
Sbjct: 238 GRCGSPL-ALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTY 296

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
            G+PV  AAG +VL +++++ L   A   G+ L   L AL+ ++  +  VRG G LLGV 
Sbjct: 297 AGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVV 356

Query: 415 FVTDRQLKTPAKAETL 430
            + D       +   +
Sbjct: 357 -LGDLATGQAFETPGI 371

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  287 bits (737), Expect = 1e-92
 Identities = 93/369 (25%), Positives = 167/369 (45%), Gaps = 25/369 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
              +   +  Y+  E+GRR +D   G+     G+    +VD++ +Q   + +++  Y+  
Sbjct: 37  QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMAT 96

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNAY 194
           + A   AE +A+  PG+L  +FFT  G+ A + A+  +  Y    G      II   + Y
Sbjct: 97  SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGY 156

Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLID 248
           HG+ A T   T ++     F++ Q  +    +P+P         E +     ++ +D I+
Sbjct: 157 HGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIE 215

Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                 +A FL+E I   GG+I    GY        +K   L I+DEV  GF R G  ++
Sbjct: 216 SLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWF 274

Query: 309 GFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN-------TFGGNPV 359
             E   GVVPDI+T AKG+ +G +PLG +  +  +   ++  N          T+   PV
Sbjct: 275 ASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPV 334

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             AA  A +++++++ + + A  +  Y    L +L+D    + + R  G +  V+ + D 
Sbjct: 335 ACAAALANIELMEREGIVDQAREMADYFAAALASLRD-LPGVAETRSVGLVGCVQCLLDP 393

Query: 420 QLKTPAKAE 428
                   +
Sbjct: 394 TRADGTAED 402

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  283 bits (726), Expect = 1e-91
 Identities = 99/384 (25%), Positives = 161/384 (41%), Gaps = 37/384 (9%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVV--DGKMQYLFDENGRRYL 102
           + P        D  + ++ +     +      H Y  P+ VV    K  +++D N +RY 
Sbjct: 14  LVPRGSMEFVKDLKTPEDYINNELKYG----AHNY-DPIPVVLKRAKGVFVYDVNDKRYY 68

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           D     ++V  GHCHP ++++++NQ K +   +  + +  +      L + +      V 
Sbjct: 69  DFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVL 126

Query: 163 FTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWK--F 212
             N+G EANE A  + R +             I+  +N + G   G + A+        F
Sbjct: 127 MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186

Query: 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL 272
                         PY             D++ L +     +V  F+ E IQG  G+I  
Sbjct: 187 GPFAPQFSKV----PY------------DDLEALEEELKDPNVCAFIVEPIQGEAGVIVP 230

Query: 273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-P 331
           +  YL  VY   KK   L +ADEVQ G  RTG        + V PD++ + K +  G  P
Sbjct: 231 SDNYLQGVYDICKKYNVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYP 289

Query: 332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL 391
           + AV+   +I  V+    + +T+GGNP+  +     L V+  +KL  NA  +G    E L
Sbjct: 290 ISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL 349

Query: 392 TALKDKYGIIGDVRGRGFLLGVEF 415
                   I+ DVRG+G L  +EF
Sbjct: 350 KRELKDSKIVRDVRGKGLLCAIEF 373

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  273 bits (700), Expect = 1e-87
 Identities = 105/426 (24%), Positives = 178/426 (41%), Gaps = 41/426 (9%)

Query: 24  FSQLAQKEESSLSE--HETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSK 81
           FS+LA  +  ++      + +               P++D+I  +   +      H Y  
Sbjct: 2   FSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYG----AHNYHP 57

Query: 82  -PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
            P+ +  GK  YL+D  GR+Y D     + V  GHCHP +V+++ +Q+ ++  ++  + N
Sbjct: 58  LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117

Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRN 192
           + + ++ E +      N   V   N+G EA E A  +AR +             I+    
Sbjct: 118 NVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAG 175

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
            + G     + ++        F     G        PY             D+  L    
Sbjct: 176 NFWGRTLSAISSSTDPTSYDGFGPFMPGFDII----PY------------NDLPALERAL 219

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
              +VA F+ E IQG  G++   PGYL  V +   +   L IADE+Q G ARTG  +   
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAV 278

Query: 311 EAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369
           +   V PDIV + K +  G+ P+ AV+   +I   +    + +T+GGNP+      A L+
Sbjct: 279 DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALE 338

Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
           V++++ L  NA  +G  L+  L  L     ++  VRG+G L  +           A    
Sbjct: 339 VLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNAIVI--KETKDWDAWKVC 394

Query: 430 LYIMDK 435
           L + D 
Sbjct: 395 LRLRDN 400

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  271 bits (695), Expect = 2e-87
 Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 34/353 (9%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
             + Y   P+ +   +  ++ D  G RY+D     + V  GH HP +++++++Q  R+  
Sbjct: 11  GANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL 70

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCN 185
           ++  + +  +  + E +A     N ++V   N+G EA E AI  AR +            
Sbjct: 71  TSRAFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRA 128

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243
           +II   + +HG   G +  ++   +K  F  +  G+       PY      D     + +
Sbjct: 129 EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY-----GD----LEAL 175

Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
           +  I      + A F+ E IQG  GI     G+L    +  KK   L +ADE+Q G  RT
Sbjct: 176 KAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT 231

Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
           G   +  +   V PD+  + K +G G+ P+       +I  V    ++ +TFGGNP+  A
Sbjct: 232 GK-VFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACA 290

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
              A L+V++++KL   +  +G  L  +L  + +   +I +VRG+G  +G+E 
Sbjct: 291 VSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP--MITEVRGKGLFIGIEL 341

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  256 bits (657), Expect = 4e-81
 Identities = 101/369 (27%), Positives = 156/369 (42%), Gaps = 22/369 (5%)

Query: 80  SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
             PL +  G    + D NG+ Y D F  +     GH    + D+I  Q+ +I HST+L +
Sbjct: 25  ENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGM 84

Query: 140 NHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRN 192
            +  A   AE L    P  L  VF+++SG EA E+A+ MA  Y            I+++N
Sbjct: 85  TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKN 144

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
            YHG+  G +   +   +   +  +    + A  P  YR   G   E   + +++L    
Sbjct: 145 GYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLL 204

Query: 251 TSGH--VAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
              H  +A    E  +QG  G+I +  GYL  V +       L I DEV  GF RTG  F
Sbjct: 205 EEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF 264

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYF---NTFGGNPV 359
              E   V PD++   KGI  G +P+     T +I +           F   +++ GN +
Sbjct: 265 -ACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQL 323

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             A     L + + + +          L   L  L      +GD+R  GF+ G E V  +
Sbjct: 324 GCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHA-LPHVGDIRQLGFMCGAELVRSK 382

Query: 420 QLKTPAKAE 428
           + K P  A+
Sbjct: 383 ETKEPYPAD 391

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  221 bits (566), Expect = 8e-68
 Identities = 101/383 (26%), Positives = 157/383 (40%), Gaps = 33/383 (8%)

Query: 79  YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138
                 VV  +   L   +GRR +D          G+ HP +  ++ +QI  + H     
Sbjct: 23  PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82

Query: 139 LNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRN 192
           + HA A +    L +  P  L+ VF  +SG+ A E+A+ MA  Y           ++ RN
Sbjct: 83  ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142

Query: 193 AYHGNAAGTMGATAQSNW---KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
            YHG+  G M      N     +         A  P P   + G   E        L+  
Sbjct: 143 GYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFA--PAPQSRMDGEWDERDMVGFARLMA- 199

Query: 250 GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                +A  + E I QG GG+    P +L  + K   + G L IADE+  GF RTG  F 
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258

Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---RNYF--NTFGGNPVCTA 362
             E   + PDI+ + K +  G + L A +TT E+AE ++      +    TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           A +A L +++    Q     +   L+E+L   +D   ++ DVR  G +  VE      + 
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHPVNMA 377

Query: 423 TPAKA------------ETLYIM 433
              K             + +Y+M
Sbjct: 378 ALQKFFVEQGVWIRPFGKLIYLM 400

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  209 bits (534), Expect = 7e-63
 Identities = 101/439 (23%), Positives = 164/439 (37%), Gaps = 50/439 (11%)

Query: 33  SSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYS-------KPLNV 85
           SS   H      +P   +      G + ++I+A         L+H YS        P+  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMAAATGGLTPEQIIAVDGA----HLWHPYSSIGREAVSPVVA 58

Query: 86  VDGKMQYLF---DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
           V     +L    D      LDA     T   GH HP +  ++  Q++ + H     L H 
Sbjct: 59  VAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHE 118

Query: 143 IA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYH 195
            A   A+ L    P  L  VFF++SG+ + E+A  MA  Y       G   +++ R  YH
Sbjct: 119 PAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYH 178

Query: 196 GNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           G+    M          + + T V       P   R         Y+   +  +    +G
Sbjct: 179 GDTFLAMSICDPHGG-MHSLWTDVLAAQVFAPQVPRDY----DPAYSAAFEAQLA-QHAG 232

Query: 254 HVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
            +A  + E + QG GG+    P YL  +    ++   L I DE+  GF RTG+ F   + 
Sbjct: 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADH 291

Query: 313 HGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---RNYF--NTFGGNPVCTAAGHA 366
            GV PDI+ + K +  G + L A + T ++A  ++           TF  NP+  A   A
Sbjct: 292 AGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVA 351

Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
            ++++     +     + + L   L   +     + DVR  G +  +E      L     
Sbjct: 352 SVELLLGQDWRTRITELAAGLTAGLDTARA-LPAVTDVRVCGAIGVIECDRPVDLAVATP 410

Query: 427 A------------ETLYIM 433
           A              +Y M
Sbjct: 411 AALDRGVWLRPFRNLVYAM 429

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  182 bits (462), Expect = 2e-50
 Identities = 75/425 (17%), Positives = 136/425 (32%), Gaps = 81/425 (19%)

Query: 82  PLNVVD---GKMQYLFDENG----RRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQH 133
            + V+D   G+   ++  +      +  DA     T          +   +     R  H
Sbjct: 356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGH 415

Query: 134 STVLYLNHAIA-DFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTGCND----- 186
                  +  A   AE L   +  G    V+F+++G+ A E+A+ MA      +      
Sbjct: 416 VMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEA 475

Query: 187 ----------IISLRNAYHGNAAGTMGATAQSNWK------------------FNVVQTG 218
                     +I+LR +YHG+  G M A A S +                      +  G
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535

Query: 219 VHHALNPDPYRGVFGADGEMY-----------------------AKDVQDLIDFGTSGHV 255
             +   P+ +  +    G                          +K +Q+      S HV
Sbjct: 536 SWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHV 595

Query: 256 AGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
              + E +  G GG+  + P +   +    +      I DEV  GF R G      E  G
Sbjct: 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLG 654

Query: 315 VVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN------TFGGNPVCTAAGHAV 367
             PDI   AK +  G +PL   + T  + +  +  +         ++  + +  A     
Sbjct: 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKA 714

Query: 368 LKVIQKDKLQNNAHVVGSYLK-----ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           ++  +  +  +N    G  L+     E +  +   +  +  V   G L  +E   D    
Sbjct: 715 IQWFKDPETNHNITSQGKTLRELWDEELVQQISS-HSAVQRVVVIGTLFALELKADASNS 773

Query: 423 TPAKA 427
             A  
Sbjct: 774 GYASL 778

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score =  137 bits (348), Expect = 3e-36
 Identities = 86/354 (24%), Positives = 142/354 (40%), Gaps = 48/354 (13%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
            L + D +  +  D +G  YLD FGG   +  GH HP V  +I   +           +H
Sbjct: 40  GLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH---GVQYAASH 96

Query: 142 AI-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA-- 198
            +   +AE + +  P +++ + FT SGTE   LA+ +AR +TG   I+     YHG    
Sbjct: 97  PLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDF 155

Query: 199 --AGTMGATAQSNWKFNVVQTGVHHAL----------NPDPYRGVFGADGEMYAKDVQDL 246
             +G                 GV              + +  R VF   G          
Sbjct: 156 SASGYNSHF------DGQPAPGVLPETTANTLLIRPDDIEGMREVFANHG---------- 199

Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
                   +A F++E +    G+  ++  +L    +  ++ G L I DEV +GF R G+H
Sbjct: 200 ------SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH 252

Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCT 361
                   V PD+  +AK    G+P G +    ++  VL+R +        TF GNP+  
Sbjct: 253 GM-QALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITA 311

Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           AA  A +  I +D +    + +G + +E +  L  + G+     GR     +  
Sbjct: 312 AAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMP 365

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score =  133 bits (337), Expect = 1e-34
 Identities = 77/362 (21%), Positives = 128/362 (35%), Gaps = 49/362 (13%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G      D +G  Y++  G       GH HP +  ++   +        L    
Sbjct: 83  PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV---GLNLSTQT 139

Query: 142 AI-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN--A 198
              A FAEA+  + P ++ +V FTNSGTEAN +A+  A   TG   +++    YHG    
Sbjct: 140 ENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLN 198

Query: 199 AGTMGATAQSNWKFNVVQTGVHHAL-----NPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
             +  A   +           +H +     + +    +    G                 
Sbjct: 199 FASGHAPTNA----------PYHVVLGVYNDVEGTADLLKRHG----------------H 232

Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEA 312
             A  L E + G GG +     +L  +     + G L I DEV     +  G+     E 
Sbjct: 233 DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQ----EM 288

Query: 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAV 367
            G+  D+ T+ K IG G+  GA     ++ E              TF  N +  +AGHA 
Sbjct: 289 LGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348

Query: 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA 427
           L  I   +  ++    G   +  L  +  +        G G L  +   +   +++    
Sbjct: 349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI-HFSRAPIRSAGDV 407

Query: 428 ET 429
             
Sbjct: 408 RA 409

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score =  117 bits (295), Expect = 4e-29
 Identities = 101/387 (26%), Positives = 149/387 (38%), Gaps = 86/387 (22%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P+ +  GK  Y +D +G +Y+D       +  GH HP++  +I    +            
Sbjct: 38  PIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
                       A+ L   MP  L  V F NSGTEA    I +AR YTG   I+     Y
Sbjct: 98  VKF---------AKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCY 147

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG++      AG    T+G         + AQ      FN          N +  +    
Sbjct: 148 HGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN----------NVETLKEALD 197

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  VA  L E I G  GI+E  PG+L  V + + +AG L I 
Sbjct: 198 KWG----------------HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIY 241

Query: 294 DEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF 351
           DEV   F     G+     +  GV PD+  + K IG G+P+GA     EI E +      
Sbjct: 242 DEVITAFRFMYGGAQ----DLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVA----- 292

Query: 352 N---------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
                     T  GNP   A+G A L+V+Q++ L      +G+ L++ +     K+ I  
Sbjct: 293 -PLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDI 351

Query: 403 DVRGRGFLLGVEFVTDRQLKTPAKAET 429
            +      L V + T   ++    A+ 
Sbjct: 352 TLNRLKGALTV-YFTTNTIEDYDAAQD 377

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score =  116 bits (294), Expect = 7e-29
 Identities = 90/385 (23%), Positives = 153/385 (39%), Gaps = 82/385 (21%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P  V  G+  YL+  +G R +D       +  GH HP V++++   + R        +  
Sbjct: 39  PFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAE 98

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
            +L         AE +   +     ++ F NSGTEA   AI +AR YTG + I+     Y
Sbjct: 99  VLL---------AEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCY 148

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+       AG      G         A A+      +N          + +    VF 
Sbjct: 149 HGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN----------DVEALERVFA 198

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  +AG + E +    G+I     +L A+ +  +++G L I 
Sbjct: 199 EYG----------------DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R G          +  DI+ + K IG G P+GAV  + E+  +LT       
Sbjct: 243 DEVVTGF-RLGLEGA-QGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT------P 294

Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   TF  +P+  AAG A LK ++++ + + +      L+E  + + D+ G+   +
Sbjct: 295 QGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTI 354

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAET 429
                ++ + F+   ++   A+A  
Sbjct: 355 NRVESMMQL-FIGVEEVSNAAQARK 378

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score =  115 bits (291), Expect = 2e-28
 Identities = 90/371 (24%), Positives = 144/371 (38%), Gaps = 81/371 (21%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P+     K  Y +D +G RY+D  G      CGH HP V++++   +++           
Sbjct: 35  PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 94

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
            VL         AE +   +P ++++V F NSGTEA    + + R YTG + II     Y
Sbjct: 95  NVL---------AEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCY 144

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+A      AG    T+G          T  +     +N          + +  + +F 
Sbjct: 145 HGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN----------DLEAVKALFA 194

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            +                 G +AG + E I G  G I    G+L  + +   +   L + 
Sbjct: 195 ENP----------------GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R        E  GV PD+ T+ K IG G+P+GA     EI +++        
Sbjct: 239 DEVITGF-RIAYGGV-QEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVA------P 290

Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T  GNP+   AG   L+++++         +   L + L A+  + G     
Sbjct: 291 AGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG 350

Query: 405 RGRGFLLGVEF 415
                + G  F
Sbjct: 351 GQVSGMFGFFF 361

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score =  112 bits (284), Expect = 1e-27
 Identities = 92/376 (24%), Positives = 138/376 (36%), Gaps = 82/376 (21%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           PL +      YLFD +G+ Y+D  G    +  GH HP +  +++  ++R        +  
Sbjct: 36  PLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEME 95

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
             +         A+ +   +P  + +V   NSGTEA   AI +AR YTG + II     Y
Sbjct: 96  VKM---------AQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCY 145

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+A      AG    T+G           A+      +N          +    R  F 
Sbjct: 146 HGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN----------DLASVRQAFE 195

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
                                VA  + E + G    I   P +LP +     + G L I 
Sbjct: 196 QYP----------------QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLII 239

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R        + + V+PD+  + K IG G+P+GA     E+   L        
Sbjct: 240 DEVMTGF-RVALAGA-QDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALA------P 291

Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T  GNP+  AAG A L  I +  +      +   L   L     +  I   V
Sbjct: 292 TGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVV 351

Query: 405 RGRGFLLGVEFVTDRQ 420
              G + G+ F T+  
Sbjct: 352 NHVGGMFGL-FFTNAD 366

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score =  111 bits (281), Expect = 4e-27
 Identities = 91/388 (23%), Positives = 154/388 (39%), Gaps = 89/388 (22%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           PL +  GK   ++D +G  Y+D       +  GH +  VV+++    +R        +  
Sbjct: 36  PLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIE 95

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
             L         A+ +  ++P ++++V   NSGTEA   A+ +AR YTG N I+     Y
Sbjct: 96  NKL---------AKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCY 145

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+       AG    T+G           A++     +N          + +  +  F 
Sbjct: 146 HGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN----------DLESVKYAFE 195

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  +A  + E + G  G++   PG+L  + +  ++ G L I 
Sbjct: 196 QFG----------------DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIF 239

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R   +      +GV PD+  + K IG G+P+GA     EI   +        
Sbjct: 240 DEVMTGF-RVAYNCG-QGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVA------P 291

Query: 353 --------TFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGII 401
                   T  GNP+  AAG+  L  +      + +  A      L+  L    +K+GI 
Sbjct: 292 SGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKA----EMLEAGLRKAAEKHGIP 347

Query: 402 GDVRGRGFLLGVEFVTDRQLKTPAKAET 429
             +   G ++G+ F TD  +     A++
Sbjct: 348 HHINRAGSMIGI-FFTDEPVINYDAAKS 374

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score =  108 bits (273), Expect = 4e-26
 Identities = 100/390 (25%), Positives = 154/390 (39%), Gaps = 92/390 (23%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P  +V G+  Y++D +G RYLD       +  GH HP V+  +   ++R           
Sbjct: 35  PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLE 94

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
             L         A+ +    P  + +V F NSGTEA   A+ +AR YTG   I+  R  Y
Sbjct: 95  VAL---------AKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNY 144

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+A      AG    T+G           A+     ++N          +P+  R V  
Sbjct: 145 HGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN----------DPEGLREVLK 194

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  +A  + E + G  G++     +L A+    K  G L IA
Sbjct: 195 RRG----------------EEIAAIIFEPVVGNAGVLVPTEDFLKAL-HEAKAYGVLLIA 237

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R        E  G+ PD+VT+ K +G G+P  A     EI E +        
Sbjct: 238 DEVMTGF-RLAFGGA-TELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVA------P 289

Query: 353 --------TFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDKYG 399
                   T  GNP+  AAG A L+++++       L++      + L+  L  +  + G
Sbjct: 290 LGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLG----ARLEAGLKEVLKEKG 345

Query: 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
           +   V   G ++ V F T+  + T   A  
Sbjct: 346 LPHTVNRVGSMITV-FFTEGPVVTFQDARR 374

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 31/231 (13%), Positives = 63/231 (27%), Gaps = 19/231 (8%)

Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 207
           +  A ++      +   + G  A  +   +   Y               N      A   
Sbjct: 82  KDKAKELFN-YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTAAHV 139

Query: 208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                  +      A + + Y       G+   K +++ I    + ++   +S       
Sbjct: 140 ELNGCKAINIVTEKAFDSETYDD---WKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSA 196

Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP---------- 317
           G   ++   L  VY+  K+ G   + D  +             +                
Sbjct: 197 GGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY 256

Query: 318 -DIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-RNYFNTFGGNPVCTAAGHA 366
            D +TM+      + +G +V   +  E+ T  R       G    T  G A
Sbjct: 257 ADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFV--TYGGLA 305

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 126 NQIKRIQHSTVLYLNHAIADFAEALASK 153
             +K++Q S  LY   A  D A ALA K
Sbjct: 20  QALKKLQASLKLY---A-DDSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.98
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.97
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.97
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.97
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.97
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.97
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.97
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.97
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.97
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.96
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.96
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.96
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.96
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.93
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.96
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.96
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.95
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.95
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.95
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.95
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.95
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.95
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.95
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.95
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.95
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.95
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.95
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.95
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.95
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.95
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.94
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.94
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.94
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.94
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.94
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.94
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.94
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.94
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.94
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.94
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.94
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.94
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.94
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.94
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.94
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.94
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.94
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.93
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.93
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.93
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.93
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.93
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.93
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.93
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.93
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.92
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.92
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.92
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.92
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.92
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.91
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.91
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.91
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.9
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.9
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.9
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.9
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.9
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.9
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.9
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.9
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.9
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.9
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.89
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.89
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.89
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.89
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.89
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.89
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.89
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.88
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.88
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.88
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.88
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.88
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.88
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.88
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.87
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.87
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.87
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.87
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.87
1svv_A	359	Threonine aldolase; structural genomics, structura	99.87
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.87
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.86
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.86
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.86
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.86
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.86
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.85
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.85
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.85
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.85
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.85
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.84
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.84
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.84
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.84
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.84
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.84
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.83
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.83
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.83
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.83
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.83
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.83
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.83
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.83
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.82
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.82
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.82
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.82
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.82
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.82
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.82
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.82
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.81
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.81
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.81
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.81
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.81
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.81
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.81
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.8
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.8
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.8
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.8
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.79
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.79
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.79
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.79
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.79
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.77
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.77
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.77
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.77
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.75
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.75
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.75
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.74
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.73
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.73
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.73
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.73
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.72
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.71
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.71
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.7
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.69
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.66
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.65
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.63
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.63
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.62
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.59
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.58
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.56
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.56
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.56
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.54
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.54
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.52
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.52
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.5
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.5
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.5
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.47
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.47
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.42
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.38
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.32
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.3
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.29
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.23
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.12
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.09
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.07
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	98.94
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.83
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.79
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	98.69
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	98.66
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	97.87

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=3.3e-83  Score=659.13  Aligned_cols=388  Identities=31%  Similarity=0.477  Sum_probs=342.6

Q ss_pred             CCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           53 PPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      .++|+|++++++++++++++++...+  .|+++++|+|+||||.|||+||||++|++++++||+||+|++|+++|++++.
T Consensus        20 t~iPGP~s~~l~~r~~~~~~~~~~~~--~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~   97 (456)
T 4atq_A           20 GAFPGPKSQALAERRSAVVAAGVASG--VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT   97 (456)
T ss_dssp             SSSSCHHHHHHHHHHHHHBCTTCCCS--CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS
T ss_pred             CCCCChHHHHHHHHHHHhCCCCCCCC--CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc
Confidence            35889999999999999998875543  4999999999999999999999999999999999999999999999999998


Q ss_pred             ccccc-ccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC-
Q 013235          133 HSTVL-YLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-  209 (447)
Q Consensus       133 ~~~~~-~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~-  209 (447)
                      |+... ++++...+|+++|.+..|. .+++|+|+||||||||.|||+||.+|+|++||+|+++|||++.+++++++... 
T Consensus        98 ~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~  177 (456)
T 4atq_A           98 HTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMP  177 (456)
T ss_dssp             CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred             CcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccc
Confidence            86653 4578889999999999986 47889999999999999999999999999999999999999999999988653 


Q ss_pred             ccccccC--CCeEeecCCCCcCCCCCC-ChHHHHHHHHHHH-HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH
Q 013235          210 WKFNVVQ--TGVHHALNPDPYRGVFGA-DGEMYAKDVQDLI-DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (447)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~-d~~~~~~~le~~i-~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~  285 (447)
                      ++....+  .++.++|.|++++..... +...+.+.+.+.+ ....++++||||+|||||++|+++||++||++|+++|+
T Consensus       178 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~  257 (456)
T 4atq_A          178 YKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK  257 (456)
T ss_dssp             TTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred             cccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh
Confidence            3433332  678888888877654322 2222222222222 23345689999999999999999999999999999999


Q ss_pred             HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       286 ~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal  365 (447)
                      +||++||+||||||||||| ++|+++++|++|||+|+||++|||+|+|++++++++++.+....|++||+|||++|++|+
T Consensus       258 ~~gillI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal  336 (456)
T 4atq_A          258 EKGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL  336 (456)
T ss_dssp             HHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred             hcCCceEecccccccCCcc-ccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence            9999999999999999999 799999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-----CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-----GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~-----~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~G  440 (447)
                      ++|++|+++++.+++++++++|+++|+++.+++     +++++|||.|+|++|||+++. ++.|+...+.++++.|+++|
T Consensus       337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~G  415 (456)
T 4atq_A          337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEG  415 (456)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999886     579999999999999998764 55678888889999999999


Q ss_pred             ceee
Q 013235          441 ALFF  444 (447)
Q Consensus       441 vlv~  444 (447)
                      |++.
T Consensus       416 vl~~  419 (456)
T 4atq_A          416 VIIL  419 (456)
T ss_dssp             EECE
T ss_pred             CEEE
Confidence            9985

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=1.4e-79  Score=634.47  Aligned_cols=382  Identities=28%  Similarity=0.427  Sum_probs=332.9

Q ss_pred             HHHHHHhhhcCCccccc----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-
Q 013235           62 EILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-  136 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-  136 (447)
                      .+.++.++|.+..+...    .+.|++|++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.+... 
T Consensus        26 ~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~  105 (473)
T 4e3q_A           26 SWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF  105 (473)
T ss_dssp             SHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCC
T ss_pred             cHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccccc
Confidence            35677788877554322    2459999999999999999999999999999999999999999999999999876433 


Q ss_pred             -cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       137 -~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                       .++++...+|+|+|++..|.++++|+|+||||||||.|||+||.|      +++.+||+|+++|||++.+++++++...
T Consensus       106 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~  185 (473)
T 4e3q_A          106 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY  185 (473)
T ss_dssp             TTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred             ccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence             346888999999999999988999999999999999999999986      5678999999999999999999998643


Q ss_pred             cc-ccccCCCeEeecCCCCcCCCCCCC-hH----HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          210 WK-FNVVQTGVHHALNPDPYRGVFGAD-GE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       210 ~~-~~~~~~g~~~~~~p~~~~~~~~~d-~~----~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      .+ +..+.+++.+++.|+.++.....+ .+    .+.+++++.+....++++||||+|||||++|+++||++||++|+++
T Consensus       186 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~l  265 (473)
T 4e3q_A          186 NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPI  265 (473)
T ss_dssp             GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHH
Confidence            22 223347888999988876544332 22    2456778888776678999999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC-------CcccccCC
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFG  355 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~-------~~~~~T~~  355 (447)
                      |++||++||+||||||||||| ++|+++++|++|||+|+||+|+|| +|+|++++++++++.+..       ..|++||+
T Consensus       266 c~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~  344 (473)
T 4e3q_A          266 LRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS  344 (473)
T ss_dssp             HHHTTCCEEEECTTTSSSTTS-SSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred             hcccceEEeccCccccCCccc-chhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC
Confidence            999999999999999999999 799999999999999999999998 899999999999987743       35889999


Q ss_pred             CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCH---HHHHHH
Q 013235          356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK---AETLYI  432 (447)
Q Consensus       356 ~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~---~~~~~~  432 (447)
                      |||++|++|+++|++++++++.++++++|++|+++|+++.+ ++.+++|||.|+|++||+++++.++.|.+   ....++
T Consensus       345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~-~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~  423 (473)
T 4e3q_A          345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERI  423 (473)
T ss_dssp             TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTT-STTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred             CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhc-CCCeeEEeecceEEEEEEecCccccccccccHHHHHHH
Confidence            99999999999999999999999999999999999999864 56799999999999999998887766532   356789


Q ss_pred             HHHHHhCCceeec
Q 013235          433 MDKMKGICALFFS  445 (447)
Q Consensus       433 ~~~l~~~Gvlv~~  445 (447)
                      .+.|+++||++++
T Consensus       424 ~~~~~~~Gll~~~  436 (473)
T 4e3q_A          424 ANTCTDLGLICRP  436 (473)
T ss_dssp             HHHHHHTTEECEE
T ss_pred             HHHHHHCCcEEEe
Confidence            9999999999864

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=7.3e-74  Score=587.55  Aligned_cols=364  Identities=24%  Similarity=0.334  Sum_probs=316.0

Q ss_pred             CCCHHHHHHHHhhhcCCcc----ccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           57 GPSADEILAKRKTFLSPSL----FHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      .|.+++++++.+++++...    ..|.+.|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++.
T Consensus        41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~  120 (454)
T 4ao9_A           41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI  120 (454)
T ss_dssp             CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred             CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence            4678899999999985332    224456999999999999999999999999999999999999999999999999875


Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~  212 (447)
                      +..  .+++...+|+++|++.+|. +++|+|+|||||||+.|||+||.+|+|++||+|+++|||++.++++.+....+.+
T Consensus       121 ~~~--~~~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~  197 (454)
T 4ao9_A          121 NLT--GHNLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPF  197 (454)
T ss_dssp             CCC--SEESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCS
T ss_pred             Ccc--CCcHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCC
Confidence            533  3566778999999999985 7899999999999999999999999999999999999999998876654322211


Q ss_pred             cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                           .+..++        + +|    ++.+++++++. .+++|+||+|||||++|+++|+++||++|+++|++||++||
T Consensus       198 -----~~~~~p--------~-nd----~~~l~~~l~~~-~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI  258 (454)
T 4ao9_A          198 -----DFLVLP--------Y-ND----AQTARAQIERH-GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV  258 (454)
T ss_dssp             -----EEEEEC--------T-TC----HHHHHHHHHHT-GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred             -----CcccCC--------C-ch----HHHHHHHHhhc-CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEE
Confidence                 222222        2 34    67788888765 34899999999999999999999999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC----cccccCCCChHHHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~----~~~~T~~~np~a~aaala~L  368 (447)
                      +|||||  ||+| .+|+++++|++|||+|+||+||||+|+|++++++++++.+...    .|.+||+|||++|++++++|
T Consensus       259 ~DEV~t--GR~G-~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L  335 (454)
T 4ao9_A          259 FDEVMT--SRLA-PHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGL  335 (454)
T ss_dssp             EECTTG--GGGS-TTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHH
T ss_pred             EECCCc--CCCc-cccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence            999999  5999 7889999999999999999999999999999999999998653    37799999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCCcee
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ++++++++++++++++++|+++|+++.++++++.+|||.|+|++++|++++..     ...+......++..|+++||++
T Consensus       336 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~  415 (454)
T 4ao9_A          336 TKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYS  415 (454)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEE
Confidence            99999999999999999999999999999999999999999999999865422     1224455677899999999998


Q ss_pred             ec
Q 013235          444 FS  445 (447)
Q Consensus       444 ~~  445 (447)
                      .+
T Consensus       416 ~p  417 (454)
T 4ao9_A          416 SP  417 (454)
T ss_dssp             CT
T ss_pred             cC
Confidence            64

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=1e-65  Score=534.49  Aligned_cols=382  Identities=25%  Similarity=0.377  Sum_probs=330.5

Q ss_pred             HHHHHHHhhhcCCccccc--c--CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           61 DEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      ..+.++.+++++..+...  +  ..|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.+|++++.+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~   91 (476)
T 3i5t_A           12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP   91 (476)
T ss_dssp             -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT
T ss_pred             hHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc
Confidence            356677777877654321  2  258999999999999999999999999999999999999999999999999876554


Q ss_pred             -cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       137 -~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                       .++++...+|+++|++.+|.+.++|+|+|||+|||+.|||+++.+      +++++||+++++|||++.+++++++...
T Consensus        92 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~  171 (476)
T 3i5t_A           92 WYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG  171 (476)
T ss_dssp             TTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGG
T ss_pred             CccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChh
Confidence             678999999999999999877889999999999999999999998      8999999999999999999999998776


Q ss_pred             cccccc--CCCeEeecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235          210 WKFNVV--QTGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (447)
Q Consensus       210 ~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l  283 (447)
                      ++..+.  ..++.+++.|..|+. ++.|.+.    ++++|++++.+..++++++||+||+++++|.++++++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~l  250 (476)
T 3i5t_A          172 NWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI  250 (476)
T ss_dssp             GCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred             hccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHH
Confidence            554332  367888888888877 5544333    367888888755456899999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCccccCCCccccc-ccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-------cccccC
Q 013235          284 IKKAGGLCIADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTF  354 (447)
Q Consensus       284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~-~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-------~~~~T~  354 (447)
                      |++||++||+||||+||||+| ++|+++ ++++.|||+||||++++| +|+|++++++++++.+...       .+.+||
T Consensus       251 c~~~gillI~DEv~~g~gr~G-~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~  329 (476)
T 3i5t_A          251 CEKHDILYISDEVVTGFGRCG-EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY  329 (476)
T ss_dssp             HHHTTCEEEEECTTTTTTTTS-SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred             HHHcCCEEEEEecccCCcccc-CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence            999999999999999999999 688898 999999999999999999 8999999999999998753       567999


Q ss_pred             CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHH---HHHH
Q 013235          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLY  431 (447)
Q Consensus       355 ~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~---~~~~  431 (447)
                      ++||++|++++++|+.++++++.+++++++++++++|+++. +++.+.++||.|+|+++++.+++.++.|...   ...+
T Consensus       330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~  408 (476)
T 3i5t_A          330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK  408 (476)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence            99999999999999999889999999999999999999764 7888999999999999999876544444322   3567


Q ss_pred             HHHHHHhCCceeec
Q 013235          432 IMDKMKGICALFFS  445 (447)
Q Consensus       432 ~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++||++++
T Consensus       409 ~~~~l~~~Gv~v~~  422 (476)
T 3i5t_A          409 IDERCFELGLIVRP  422 (476)
T ss_dssp             HHHHHHHTTEECEE
T ss_pred             HHHHHHHCCCEEEe
Confidence            89999999999874

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=3.5e-65  Score=527.26  Aligned_cols=388  Identities=35%  Similarity=0.503  Sum_probs=339.6

Q ss_pred             CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235           54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (447)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~  133 (447)
                      ..++|++++++++.++++.+...  ...|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~   98 (453)
T 4ffc_A           21 PLPGPRSGALAERRRAAVSAGVG--STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH   98 (453)
T ss_dssp             CSSCHHHHHHHHHHHHHBCTTTC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCHHHHHHHHHHhcCCCcC--CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc
Confidence            45678899999999999877643  2568999999999999999999999999999999999999999999999999876


Q ss_pred             cc-ccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Cc
Q 013235          134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW  210 (447)
Q Consensus       134 ~~-~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~  210 (447)
                      .. ..++++...+|+++|++.+|.. .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus        99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~  178 (453)
T 4ffc_A           99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY  178 (453)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence            54 3577889999999999999854 578999999999999999999999999999999999999999999998864 44


Q ss_pred             cccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          211 KFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                      +..+..  .++..++.|.+++.+++.+.+...+...+.+++ ..++++++||+||+|+++|.++++++||++|+++|++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~  258 (453)
T 4ffc_A          179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN  258 (453)
T ss_dssp             TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence            443322  578888988888877766643333322222222 23458999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHH
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~  367 (447)
                      |++||+||||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||+++++++++
T Consensus       259 ~~llI~DEv~~g~g~~g-~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aa  337 (453)
T 4ffc_A          259 GVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAA  337 (453)
T ss_dssp             TCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHH
T ss_pred             CCEEEEecCccCCCccc-ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHH
Confidence            99999999999999999 68888999999999999999999999999999999999888777889999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |+.++++++.+++++++++++++|+++.++++.+..++|.|+|+++++.+ +.++.|+.....++.+.|+++||++.+
T Consensus       338 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~~  414 (453)
T 4ffc_A          338 LGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAEALSQGVLILT  414 (453)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBC-TTSCCBCHHHHHHHHHHHHHTTEECCE
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEec-CcccCCCHHHHHHHHHHHHhCCCEEec
Confidence            99998889999999999999999999999999999999999999999976 344556666778899999999999864

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=5e-65  Score=525.78  Aligned_cols=388  Identities=31%  Similarity=0.447  Sum_probs=337.9

Q ss_pred             CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235           54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (447)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~  133 (447)
                      ..++|++++++++.++++.+....  ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.|
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~   95 (451)
T 3oks_A           18 AIPGPRSQALIDRKGTAVARGVGT--TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH   95 (451)
T ss_dssp             CSSCHHHHHHHHHHHHHBCTTBCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC
T ss_pred             CCCCCcHHHHHHHHHhhccCCcCC--CCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc
Confidence            456788999999999998776432  468999999999999999999999999999999999999999999999998866


Q ss_pred             cc-ccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Cc
Q 013235          134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW  210 (447)
Q Consensus       134 ~~-~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~  210 (447)
                      .+ ..++++...+|+++|++.+|.. .++|+|+|||+|||++|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus        96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~  175 (451)
T 3oks_A           96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY  175 (451)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence            54 3577889999999999999754 578999999999999999999999999999999999999999999998864 44


Q ss_pred             cccccC--CCeEeecCCCCcCCCC-CCC----hHHHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          211 KFNVVQ--TGVHHALNPDPYRGVF-GAD----GEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~-~~d----~~~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      +..+..  .++..++.|++++.++ +.|    ....++.+++.+++ ..++++++||+||+|+++|+++++++||++|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~  255 (451)
T 3oks_A          176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD  255 (451)
T ss_dssp             TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence            443322  5788888887665542 222    12234555555543 234589999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHH
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA  362 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~a  362 (447)
                      +|++||++||+||||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++++
T Consensus       256 l~~~~g~~lI~DEv~~g~g~~g-~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~a  334 (451)
T 3oks_A          256 WCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACA  334 (451)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHH
T ss_pred             HHHHcCCEEEEEecccCCCccc-cchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHH
Confidence            9999999999999999999999 688899999999999999999999999999999999998887778899999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       363 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                      +++++|+.++++++.+++++++++++++|+++..+++.+..++|.|+|+++++.+ +.++.|+.....++.+.|+++||+
T Consensus       335 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~  413 (451)
T 3oks_A          335 AALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAGAHAAGVI  413 (451)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBS-TTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEec-CccCCCCHHHHHHHHHHHHhCCcE
Confidence            9999999998889999999999999999999999999999999999999999976 344556666778899999999999


Q ss_pred             eec
Q 013235          443 FFS  445 (447)
Q Consensus       443 v~~  445 (447)
                      +.+
T Consensus       414 v~~  416 (451)
T 3oks_A          414 VLS  416 (451)
T ss_dssp             CEE
T ss_pred             Eec
Confidence            864

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=4e-67  Score=574.22  Aligned_cols=381  Identities=18%  Similarity=0.221  Sum_probs=309.8

Q ss_pred             HHHHhhhcCCccccc----cCCCeEEEeecc--cEEEecCCC----eEEEecCCcccccCCCC-CHHHHHHHHHHHHhcc
Q 013235           64 LAKRKTFLSPSLFHL----YSKPLNVVDGKM--QYLFDENGR----RYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        64 ~~~~~~~~~~~~~~~----~~~p~~~~~g~G--~~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~  132 (447)
                      .++.+++++..+...    ...|++|++|+|  +||||.|||    +|||+++|++++++||+ ||+|++|+++|++++.
T Consensus       335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~  414 (831)
T 4a0g_A          335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG  414 (831)
T ss_dssp             HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence            344556666543222    124889999988  499999999    99999999999999999 9999999999999998


Q ss_pred             cccc-cccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHH-Hhhc--------------CCCeEEEEcCCcc
Q 013235          133 HSTV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMA-RLYT--------------GCNDIISLRNAYH  195 (447)
Q Consensus       133 ~~~~-~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~a-r~~t--------------~~~~ii~~~~~yH  195 (447)
                      |.+. .+.++...+|+++|++.+|.+ +++|||+||||||||.|||+| |.|+              +|.+||+++++||
T Consensus       415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syH  494 (831)
T 4a0g_A          415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYH  494 (831)
T ss_dssp             SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCC
T ss_pred             cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcc
Confidence            8753 467899999999999999865 789999999999999999999 6664              4678999999999


Q ss_pred             cCchhhhhccCCCCccc--------c----ccC------CCeEeecCCCCcCCCCCC-----C--------------hHH
Q 013235          196 GNAAGTMGATAQSNWKF--------N----VVQ------TGVHHALNPDPYRGVFGA-----D--------------GEM  238 (447)
Q Consensus       196 G~~~~~~~~t~~~~~~~--------~----~~~------~g~~~~~~p~~~~~~~~~-----d--------------~~~  238 (447)
                      |.|.+++++++...|+.        .    ++.      .++.+++.|+.++....+     +              .+.
T Consensus       495 G~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (831)
T 4a0g_A          495 GDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARI  574 (831)
T ss_dssp             CSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHH
T ss_pred             cCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHH
Confidence            99999999998654433        0    000      245567777766543211     1              123


Q ss_pred             HHHHHHHHHHc----cCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc
Q 013235          239 YAKDVQDLIDF----GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH  313 (447)
Q Consensus       239 ~~~~le~~i~~----~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~  313 (447)
                      |.++|+++|+.    ..++++|+||+||+ ||+||++++|++||++|+++|++||++||+|||||||||+| ++|+++++
T Consensus       575 ~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG-~~fa~e~~  653 (831)
T 4a0g_A          575 YSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG-VETTTELL  653 (831)
T ss_dssp             HHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS-BSSTHHHH
T ss_pred             HHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC-CchhhHhc
Confidence            45778877763    23568999999997 99999999999999999999999999999999999999999 78999999


Q ss_pred             CCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC------cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013235          314 GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY  386 (447)
Q Consensus       314 gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~------~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~  386 (447)
                      |+.|||+||||+|+|| +|+|++++++++++.+...      .|++||++||++|++++++|++++++++.+++++++++
T Consensus       654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~  733 (831)
T 4a0g_A          654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT  733 (831)
T ss_dssp             SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred             CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999 7999999999999998753      27899999999999999999999988888888877777


Q ss_pred             HHH----HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          387 LKE----RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       387 l~~----~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++    .+.+...+++.+.+|||.|+|++|++++++..+.++...+.++.+.|+++||++++
T Consensus       734 l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p  796 (831)
T 4a0g_A          734 LRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP  796 (831)
T ss_dssp             BCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe
Confidence            653    55555667899999999999999999876433323334567899999999999864

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=2.2e-65  Score=531.35  Aligned_cols=383  Identities=26%  Similarity=0.411  Sum_probs=327.0

Q ss_pred             HHHHHHHHhhhcCCccccc----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 013235           60 ADEILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--  133 (447)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--  133 (447)
                      .+++.++.++++++.+...    ...|+++++|+|+||||.|||+||||++|+++++|||+||+|++|+.+|++++.+  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~   91 (472)
T 3hmu_A           12 TAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYN   91 (472)
T ss_dssp             HHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC
T ss_pred             HHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            5677777888876654321    1369999999999999999999999999999999999999999999999999762  


Q ss_pred             ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCC
Q 013235          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ  207 (447)
Q Consensus       134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~  207 (447)
                      +...|+++...+|+++|++.+|.+.++|+|+|||+|||+.|+|+++.+      +++++||+++++|||++.+++++++.
T Consensus        92 ~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~  171 (472)
T 3hmu_A           92 TFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGM  171 (472)
T ss_dssp             SSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCC
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCC
Confidence            233678899999999999999887889999999999999999999987      47899999999999999999999886


Q ss_pred             CCccccc-cCCCeEeecCCCCcC-CCCCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHH
Q 013235          208 SNWKFNV-VQTGVHHALNPDPYR-GVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY  281 (447)
Q Consensus       208 ~~~~~~~-~~~g~~~~~~p~~~~-~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~  281 (447)
                      ..++..+ ...++..++.|..|+ +.+ .|.+.    ++++|++++.+..++++++||+||+||++|.++++++||++|+
T Consensus       172 ~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~  250 (472)
T 3hmu_A          172 AGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ  250 (472)
T ss_dssp             HHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred             hhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence            5443221 345788888777555 222 33322    3677888887554568999999999999999999999999999


Q ss_pred             HHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC--cccccCCCCh
Q 013235          282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNP  358 (447)
Q Consensus       282 ~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~--~~~~T~~~np  358 (447)
                      ++|++||++||+||||+||||+| ++|+++++++.||++||||++++| +|+|++++++++++.+...  .+.+||++||
T Consensus       251 ~l~~~~gillI~DEv~~gfgr~G-~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np  329 (472)
T 3hmu_A          251 RICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHP  329 (472)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCH
T ss_pred             HHHHHcCCEEEEEccccCCcccC-ccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCH
Confidence            99999999999999999999999 688999999999999999999987 8999999999999998433  5778999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC----HHHHHHHH
Q 013235          359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----KAETLYIM  433 (447)
Q Consensus       359 ~a~aaala~L~~i~~~~l~~~~~-~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~----~~~~~~~~  433 (447)
                      ++|++++++|+.++++++.++++ +++++++++|+++. +++.+.++||.|+|+++++..+..++.|.    ...+.++.
T Consensus       330 ~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  408 (472)
T 3hmu_A          330 VAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICR  408 (472)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHH
Confidence            99999999999998889999999 99999999998774 58889999999999999997654433332    33467789


Q ss_pred             HHHHhCCceeec
Q 013235          434 DKMKGICALFFS  445 (447)
Q Consensus       434 ~~l~~~Gvlv~~  445 (447)
                      +.|+++||++++
T Consensus       409 ~~l~~~Gv~v~~  420 (472)
T 3hmu_A          409 ERCFANNLIMRH  420 (472)
T ss_dssp             HHHHHTTBCCEE
T ss_pred             HHHHHCCcEEEe
Confidence            999999999875

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=7.1e-62  Score=503.28  Aligned_cols=383  Identities=28%  Similarity=0.404  Sum_probs=327.4

Q ss_pred             HHHHHHhhhcCCcccc---c---cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 013235           62 EILAKRKTFLSPSLFH---L---YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--  133 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~---~---~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--  133 (447)
                      ++.+..++++++.+..   +   ...|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.+  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~   87 (460)
T 3gju_A            8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH   87 (460)
T ss_dssp             CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            3566667777655422   1   1235999999999999999999999999999999999999999999999998753  


Q ss_pred             ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCC
Q 013235          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ  207 (447)
Q Consensus       134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~  207 (447)
                      +...++++...+|+++|++.++.+.++|+|+|||+|||+.|+++++.+      +++++||+++++|||.+.+++++++.
T Consensus        88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  167 (460)
T 3gju_A           88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL  167 (460)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence            233567888999999999998878889999999999999999999987      57899999999999999999999887


Q ss_pred             CCcccccc--CCCeEeecCCCCcCCCC-CCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHH
Q 013235          208 SNWKFNVV--QTGVHHALNPDPYRGVF-GADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV  280 (447)
Q Consensus       208 ~~~~~~~~--~~g~~~~~~p~~~~~~~-~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l  280 (447)
                      ..++..+.  ..++..++.|..|+.+. +.+.+.    ++++|++++.+..++++++||+||+++++|.++++++||++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l  247 (460)
T 3gju_A          168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI  247 (460)
T ss_dssp             GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred             cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence            66554332  25788888887776543 233332    357788888754456899999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhc-------CCcccc
Q 013235          281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT-------RRNYFN  352 (447)
Q Consensus       281 ~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~-------~~~~~~  352 (447)
                      +++|++||++||+||||+||||+| ++|+++++++.||++||||+|++| +|+|++++++++++.+.       ...+.+
T Consensus       248 ~~l~~~~~~llI~DEv~~g~gr~g-~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~  326 (460)
T 3gju_A          248 QAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW  326 (460)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC
T ss_pred             HHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC
Confidence            999999999999999999999999 688889999999999999999999 79999999999999884       235779


Q ss_pred             cCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCC---CHHHH
Q 013235          353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAET  429 (447)
Q Consensus       353 T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p---~~~~~  429 (447)
                      ||++||++|++++++|+.++++++.+++++++++++++|.+..++++.+.+++|.|+|+++++.++..++.+   ....+
T Consensus       327 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  406 (460)
T 3gju_A          327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIG  406 (460)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHH
Confidence            999999999999999999988899999999999999999888888999999999999999999866543333   22346


Q ss_pred             HHHHHHHHhCCceeec
Q 013235          430 LYIMDKMKGICALFFS  445 (447)
Q Consensus       430 ~~~~~~l~~~Gvlv~~  445 (447)
                      .++.+.|+++||++++
T Consensus       407 ~~~~~~l~~~Gv~v~~  422 (460)
T 3gju_A          407 PQVATALAASGVIGRA  422 (460)
T ss_dssp             HHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHCCeEEec
Confidence            6789999999999875

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-61  Score=499.35  Aligned_cols=384  Identities=32%  Similarity=0.497  Sum_probs=332.7

Q ss_pred             CHHHHHHHHhhhcCCcccccc-CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~  137 (447)
                      .+++++++.++++++.+..+. ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.+....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~   87 (452)
T 3n5m_A            8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS   87 (452)
T ss_dssp             HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred             cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence            356788888899887433332 4689999999999999999999999999999999999999999999999998774456


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh---c---CCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---T---GCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~---t---~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      ++++...+|+++|++.++.+.+ |+|+|||+|||+.|+++++.+   +   ++++||+++++|||.+.+++++++...++
T Consensus        88 ~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  166 (452)
T 3n5m_A           88 QSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR  166 (452)
T ss_dssp             SEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred             cCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence            7889999999999999987777 999999999999999999977   6   78999999999999999999998876554


Q ss_pred             cccc--CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHH
Q 013235          212 FNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSI  284 (447)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~  284 (447)
                      ..+.  ..++..++.|+.++.+++++.+    .++++|++.+.+..++++++||+||+ || +|.++++++||++|+++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~  245 (452)
T 3n5m_A          167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC  245 (452)
T ss_dssp             TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred             cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence            3332  2578888888888888764322    23678888886333458999999999 89 999999999999999999


Q ss_pred             HHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC----C--cccccCCCC
Q 013235          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR----R--NYFNTFGGN  357 (447)
Q Consensus       285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~----~--~~~~T~~~n  357 (447)
                      ++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+..    .  .+.+||++|
T Consensus       246 ~~~~~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~  324 (452)
T 3n5m_A          246 QKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN  324 (452)
T ss_dssp             HHHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred             HHcCCEEEEecchhCCCccc-ccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence            99999999999999999999 688899999999999999999999 999999999999998853    2  367999999


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC-HHHHHHHHHHH
Q 013235          358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKM  436 (447)
Q Consensus       358 p~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~-~~~~~~~~~~l  436 (447)
                      |+++++++++|+.++++++.+++++++++++++|+++.++++.+..+++.|+|+++++.++..+..+. .....++.+.|
T Consensus       325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l  404 (452)
T 3n5m_A          325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC  404 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence            99999999999999888999999999999999999998889999999999999999997665444332 33456789999


Q ss_pred             HhCCceeec
Q 013235          437 KGICALFFS  445 (447)
Q Consensus       437 ~~~Gvlv~~  445 (447)
                      +++||++.+
T Consensus       405 ~~~Gv~~~~  413 (452)
T 3n5m_A          405 KEKGLIIGR  413 (452)
T ss_dssp             HHTTEECEE
T ss_pred             HHCCcEEee
Confidence            999999874

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=9.4e-62  Score=502.12  Aligned_cols=372  Identities=23%  Similarity=0.317  Sum_probs=317.7

Q ss_pred             CCCHHHHHHHHhhhcCCccccc---cCCCeEEEeecccEEEec-CCC--eEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235           57 GPSADEILAKRKTFLSPSLFHL---YSKPLNVVDGKMQYLFDE-NGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~g~G~~l~d~-dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~  130 (447)
                      +.+.++++++.++++++.+...   ...|+++++|+|+|+||. |||  +||||++|++++++||+||+|++|+.+|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~  106 (457)
T 3tfu_A           27 GLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV  106 (457)
T ss_dssp             CCCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh
Confidence            3456788999999988765432   345899999999999999 999  9999999999999999999999999999999


Q ss_pred             ccccc-ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhh
Q 013235          131 IQHST-VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMG  203 (447)
Q Consensus       131 ~~~~~-~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~  203 (447)
                      +.|.+ ..++++...+|+++|++.+|.+.++|+|+|||+|||+.|+|+++.+      +++++||+++++|||.+.++++
T Consensus       107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~  186 (457)
T 3tfu_A          107 MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMS  186 (457)
T ss_dssp             CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHT
T ss_pred             ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhc
Confidence            87765 4678899999999999999877889999999999999999999987      7889999999999999999999


Q ss_pred             ccC-CCCcccccc--CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHH
Q 013235          204 ATA-QSNWKFNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPA  279 (447)
Q Consensus       204 ~t~-~~~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~  279 (447)
                      +++ ...++..+.  ..++..++.|...   +   ....+++|++++++. ++++++||+|| +|+++|.++++++||++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~---~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~  259 (457)
T 3tfu_A          187 ICDPHGGMHSLWTDVLAAQVFAPQVPRD---Y---DPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHD  259 (457)
T ss_dssp             TSCCC----------CCCCEEECCCCSS---C---CHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHH
T ss_pred             ccCCcccccccccCCCCCceEecCCCcc---c---CHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHH
Confidence            865 333332222  2456666654321   1   112267788888643 34899999999 99999999999999999


Q ss_pred             HHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhc---CC--ccccc
Q 013235          280 VYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RR--NYFNT  353 (447)
Q Consensus       280 l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~---~~--~~~~T  353 (447)
                      |+++|++||++||+||||+||||+| .+|+++++++.||++||||+|+|| +|+|++++++++++.+.   .+  .+.+|
T Consensus       260 l~~l~~~~gillI~DEv~~g~gr~G-~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t  338 (457)
T 3tfu_A          260 LRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPT  338 (457)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred             HHHHHHHcCCEEEEEcCccCCcccc-chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence            9999999999999999999999999 688889999999999999999999 59999999999999884   33  57799


Q ss_pred             CCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHH
Q 013235          354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM  433 (447)
Q Consensus       354 ~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~  433 (447)
                      |++||++|++++++|+.++++++.+++++++++++++|+++. +++.+.++|+.|+|+++++.++.        .+.++.
T Consensus       339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~  409 (457)
T 3tfu_A          339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV--------DLAVAT  409 (457)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC--------CHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc--------cHHHHH
Confidence            999999999999999999888999999999999999999886 67888999999999999995431        146789


Q ss_pred             HHHHhCCceeec
Q 013235          434 DKMKGICALFFS  445 (447)
Q Consensus       434 ~~l~~~Gvlv~~  445 (447)
                      +.|+++||++++
T Consensus       410 ~~l~~~Gv~v~~  421 (457)
T 3tfu_A          410 PAALDRGVWLRP  421 (457)
T ss_dssp             HHHHHTTEECCC
T ss_pred             HHHHHCCeEEEe
Confidence            999999999864

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=6.7e-62  Score=503.35  Aligned_cols=382  Identities=25%  Similarity=0.395  Sum_probs=313.1

Q ss_pred             HHHHHHhhhcCCcccc---c-cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--ccc
Q 013235           62 EILAKRKTFLSPSLFH---L-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HST  135 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~---~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~  135 (447)
                      ++.++.+++++..+..   + ...|+++++|+|+||||.||++||||++|+++++|||+||+|++|+.+|++++.  ++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~   88 (459)
T 4a6r_A            9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF   88 (459)
T ss_dssp             -------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT
T ss_pred             HHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc
Confidence            4555556666554322   1 235899999999999999999999999999999999999999999999999875  223


Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      ..++++...+|+++|++.+|.+.++|+|+|||+|||+.|+++++.+      +++++||+++++|||.+.+++++++...
T Consensus        89 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  168 (459)
T 4a6r_A           89 FKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKY  168 (459)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTT
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChh
Confidence            3577899999999999999887889999999999999999999987      4789999999999999999999988776


Q ss_pred             cccccc--CCCeEeecCCCCcC-CCCCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          210 WKFNVV--QTGVHHALNPDPYR-GVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       210 ~~~~~~--~~g~~~~~~p~~~~-~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      ++..+.  ..++..++.|..|+ +.+ .|.+.    ++++|++++....++++++||+||+++++|.++++++||++|++
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~  247 (459)
T 4a6r_A          169 MHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIER  247 (459)
T ss_dssp             TC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             hccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence            654332  25788888777655 222 34332    35778888875545689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhc---CCcccccCCCCh
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RRNYFNTFGGNP  358 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~---~~~~~~T~~~np  358 (447)
                      +|++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+.   ...+.+||++||
T Consensus       248 l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~  326 (459)
T 4a6r_A          248 ICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHP  326 (459)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCH
T ss_pred             HHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCH
Confidence            9999999999999999999999 688889999999999999999987 89999999999999886   445778999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCC---CCHHHHHHHHH
Q 013235          359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT---PAKAETLYIMD  434 (447)
Q Consensus       359 ~a~aaala~L~~i~~~~l~~~~~-~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~---p~~~~~~~~~~  434 (447)
                      ++|++++++|+.++++++.++++ ++++++++.|.+...+++.+..++|.|+|+++++.++..++.   |+.....++.+
T Consensus       327 ~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (459)
T 4a6r_A          327 VCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRD  406 (459)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHH
Confidence            99999999999998889999999 999999999944446788899999999999999986654433   23445678999


Q ss_pred             HHHhCCceeec
Q 013235          435 KMKGICALFFS  445 (447)
Q Consensus       435 ~l~~~Gvlv~~  445 (447)
                      .|+++||++++
T Consensus       407 ~l~~~Gv~v~~  417 (459)
T 4a6r_A          407 IFFRNNLIMRA  417 (459)
T ss_dssp             HHHHTTEECEE
T ss_pred             HHHHCCeEEec
Confidence            99999999875

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=3.7e-61  Score=496.14  Aligned_cols=380  Identities=27%  Similarity=0.397  Sum_probs=307.4

Q ss_pred             HHHHHHhhhcCCcccc---ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc-ccc
Q 013235           62 EILAKRKTFLSPSLFH---LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVL  137 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~---~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-~~~  137 (447)
                      ++.+..+++++.....   +.+.|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.+. ...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~   83 (448)
T 3dod_A            4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG   83 (448)
T ss_dssp             HHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS
T ss_pred             HHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence            5677778888754322   235699999999999999999999999999999999999999999999999988664 345


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh---cC---CCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TG---CNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~---t~---~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      ++++...+|+++|++.+|.+.++|+|+|||+|||+.|+++++.+   +|   +++||+++++|||.+.+++++++...++
T Consensus        84 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  163 (448)
T 3dod_A           84 MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFH  163 (448)
T ss_dssp             SEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccc
Confidence            77889999999999999877889999999999999999999988   78   8999999999999999999998866554


Q ss_pred             ccccC--CCeEeecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCCeEEEEEcccc-CCCceeeCCCChHHHHHHHH
Q 013235          212 FNVVQ--TGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSI  284 (447)
Q Consensus       212 ~~~~~--~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~-~~gG~~~~~~~~l~~l~~l~  284 (447)
                      ..+.+  .++..++.|+.|+.+ +.+.+.    .+++|++++... ++++++||+||++ +++|.++++++||++|+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~  241 (448)
T 3dod_A          164 HVYGPLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELC  241 (448)
T ss_dssp             ---------CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred             ccccCCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence            43322  567888888888776 433322    267788888632 3489999999998 99999999999999999999


Q ss_pred             HHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC-------CcccccCCC
Q 013235          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFGG  356 (447)
Q Consensus       285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~-------~~~~~T~~~  356 (447)
                      ++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+..       ..+.+||++
T Consensus       242 ~~~~~~lI~DEv~~g~g~~g-~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~  320 (448)
T 3dod_A          242 TTYDVLMIVDEVATGFGRTG-KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG  320 (448)
T ss_dssp             HHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred             HHhCCEEEEeccccCCCccc-chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence            99999999999999999999 688889999999999999999999 599999999999999876       457799999


Q ss_pred             ChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHH---HHHHHH
Q 013235          357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLYIM  433 (447)
Q Consensus       357 np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~---~~~~~~  433 (447)
                      ||+++++++++|+.++++++.++++++++++++.|.+ ..+++.+..+++.|+|+++++.++..++.+...   .+.+++
T Consensus       321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (448)
T 3dod_A          321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVS  399 (448)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHH
Confidence            9999999999999998889999999999999999999 667888999999999999999765444333221   246789


Q ss_pred             HHHHhCCceeec
Q 013235          434 DKMKGICALFFS  445 (447)
Q Consensus       434 ~~l~~~Gvlv~~  445 (447)
                      +.|+++||++.+
T Consensus       400 ~~l~~~Gv~~~~  411 (448)
T 3dod_A          400 LKMRELGMLTRP  411 (448)
T ss_dssp             HHHHHTTEECCE
T ss_pred             HHHHHCCcEEec
Confidence            999999999864

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.3e-58  Score=474.74  Aligned_cols=378  Identities=26%  Similarity=0.349  Sum_probs=312.0

Q ss_pred             CCCHHHHHHHHhhhcCCccc---ccc-----CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHH
Q 013235           57 GPSADEILAKRKTFLSPSLF---HLY-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI  128 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l  128 (447)
                      .|++.+++++.+++++....   ..|     ..|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+|+
T Consensus         5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~   84 (434)
T 3l44_A            5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA   84 (434)
T ss_dssp             CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence            35688999999998875431   111     4699999999999999999999999999999999999999999999999


Q ss_pred             HhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC
Q 013235          129 KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS  208 (447)
Q Consensus       129 ~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~  208 (447)
                      ++..  ...|+++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||.+..++..++..
T Consensus        85 ~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~  161 (434)
T 3l44_A           85 ENGV--LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSG  161 (434)
T ss_dssp             HHCS--CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC----
T ss_pred             HhCc--CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCc
Confidence            8852  245778899999999999998 5789999999999999999999999999999999999999999998877643


Q ss_pred             CccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          209 NWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       209 ~~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                      ......+. .++.....+.....++ +|    .++|+++++.. ++++++||+||+++++|.+.++++|+++|+++|++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  235 (434)
T 3l44_A          162 PSTLGTPDSAGVPQSIAQEVITVPF-NN----VETLKEALDKW-GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA  235 (434)
T ss_dssp             ---CCCBSSTTCCHHHHTTEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT
T ss_pred             ccccCCCCcCCCCCcCCCceEecCc-cc----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            32221111 1111000011111122 23    67788877643 247999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---CcccccCCCChHHHHHH
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAG  364 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~~~~~T~~~np~a~aaa  364 (447)
                      |++||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+..   ..+.+||++||++++++
T Consensus       236 ~illI~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa  313 (434)
T 3l44_A          236 GALVIYDEVITAF-RFM-YGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASG  313 (434)
T ss_dssp             TCEEEEECTTTTT-TSS-SSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred             CCEEEEeccccce-ecc-ccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHH
Confidence            9999999999999 999 678889999999999999999999999999999999998865   23678999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhC
Q 013235          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGI  439 (447)
Q Consensus       365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~  439 (447)
                      +++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.++...     ..|+.....++.+.|+++
T Consensus       314 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  393 (434)
T 3l44_A          314 IACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE  393 (434)
T ss_dssp             HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC
Confidence            999999988899999999999999999999888888889999999999999643211     113444567889999999


Q ss_pred             Cceeec
Q 013235          440 CALFFS  445 (447)
Q Consensus       440 Gvlv~~  445 (447)
                      ||++++
T Consensus       394 Gv~v~~  399 (434)
T 3l44_A          394 GVNLAP  399 (434)
T ss_dssp             TEECCS
T ss_pred             CeEEee
Confidence            999875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=9.7e-64  Score=515.52  Aligned_cols=364  Identities=23%  Similarity=0.309  Sum_probs=309.1

Q ss_pred             CCCHHHHHHHHhhhcCCcccc----ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235           57 GPSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~  132 (447)
                      .+++++++++.++++.+....    +...|+++++|+|+||||+|||+||||++|++++++||+||+|++|+.+|+++..
T Consensus        54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~  133 (465)
T 2yky_A           54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL  133 (465)
Confidence            456788899999888754322    3345999999999999999999999999999999999999999999999998852


Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~  212 (447)
                        ...|+++...+|+++|++.+| +.++|+|+|||+|||+.|+|+||.++++++||+++++|||++.+++  ++  ..  
T Consensus       134 --~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg--~~--  204 (465)
T 2yky_A          134 --NLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG--HA--  204 (465)
Confidence              345788899999999999998 5788999999999999999999999999999999999999999887  22  00  


Q ss_pred             cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                         ..|+..    +....+| +|    +++|++++++. ++++++||+||+++++|.++++++|+++|+++|++||++||
T Consensus       205 ---~~g~~~----~~~~~~~-~d----~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI  271 (465)
T 2yky_A          205 ---PTNAPY----HVVLGVY-ND----VEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLI  271 (465)
Confidence               112211    1111123 33    56777777643 35899999999999999999999999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---C--cccccCCCChHHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~--~~~~T~~~np~a~aaala~  367 (447)
                      +||||+ | |+| .+|+++++|+.||++||||++|+|+|+|++++++++++.+..   +  .+.+||++||++|++++++
T Consensus       272 ~DEv~~-~-r~g-~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aa  348 (465)
T 2yky_A          272 FDEVMT-S-RLS-GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA  348 (465)
Confidence            999999 7 999 688889999999999999999999999999999999998876   2  3679999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCC-----CCCCCCHHHHHHHHHHHHhCCce
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR-----QLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~-----~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                      |+.++++++.+++++++++|+++|+++.++++.+.+++|.|+|++++|.+++     ..+.++.....++++.|+++||+
T Consensus       349 L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~  428 (465)
T 2yky_A          349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIY  428 (465)
Confidence            9999888999999999999999999998888888899999999999997521     11223334467899999999999


Q ss_pred             eec
Q 013235          443 FFS  445 (447)
Q Consensus       443 v~~  445 (447)
                      +.+
T Consensus       429 v~p  431 (465)
T 2yky_A          429 LAP  431 (465)
Confidence            864

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=1.3e-58  Score=474.23  Aligned_cols=376  Identities=24%  Similarity=0.333  Sum_probs=303.8

Q ss_pred             CHHHHHHHHhhhcCCcccc---c----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc
Q 013235           59 SADEILAKRKTFLSPSLFH---L----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI  131 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~  131 (447)
                      ++.+++++.+++++.+...   .    ...|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+|++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~   85 (429)
T 4e77_A            6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG   85 (429)
T ss_dssp             HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence            5778999999998764321   1    23699999999999999999999999999999999999999999999999886


Q ss_pred             ccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       132 ~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      .+  ..|+++...+|+++|++.++ +.++++|+|||+||++.|+++++.++++++||+++++|||.+..++..++.....
T Consensus        86 ~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  162 (429)
T 4e77_A           86 LS--FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALT  162 (429)
T ss_dssp             SC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC---------------
T ss_pred             cc--cCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccc
Confidence            43  34678899999999999998 5789999999999999999999999999999999999999998776555432221


Q ss_pred             ccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235          212 FNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (447)
Q Consensus       212 ~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~l  290 (447)
                      ...+. .++.....+..++.++ +|    .++|++++++. ++++++||+||+++++|.+.++++|+++|+++|++||++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~l  236 (429)
T 4e77_A          163 LGQPNSPGVPTDFAKHTLTCTY-ND----LASVRQAFEQY-PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGAL  236 (429)
T ss_dssp             ---CCCTTSCGGGGTTEEEECT-TC----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred             cCCCCcCCCCCccCCceeecCC-CC----HHHHHHHHHhc-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            11111 1221111112222233 23    67788888754 347999999999999999999999999999999999999


Q ss_pred             EEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHHHHH
Q 013235          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaala~  367 (447)
                      ||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+...   .+.+||++||+++++++++
T Consensus       237 li~DEv~~g~-r~g-~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aa  314 (429)
T 4e77_A          237 LIIDEVMTGF-RVA-LAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFAC  314 (429)
T ss_dssp             EEEEETTTBT-TTB-TTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHH
T ss_pred             EEEeccccCc-ccC-cchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHH
Confidence            9999999999 999 6888899999999999999999999999999999999988753   3678999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC------CCCCHHHHHHHHHHHHhCCc
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL------KTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~------~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      |+.++++++.+++++++++++++|+++..+++.+..++|.|+|+++++.++...      ..++...+.++.+.|+++||
T Consensus       315 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  394 (429)
T 4e77_A          315 LTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGV  394 (429)
T ss_dssp             HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCe
Confidence            999988899999999999999999999888888889999999999999754210      12344456789999999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      ++.+
T Consensus       395 ~v~~  398 (429)
T 4e77_A          395 YLAP  398 (429)
T ss_dssp             ECCS
T ss_pred             EEee
Confidence            9875

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=3.8e-58  Score=470.85  Aligned_cols=377  Identities=23%  Similarity=0.324  Sum_probs=313.6

Q ss_pred             CCCHHHHHHHHhhhcCCccc---cc----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235           57 GPSADEILAKRKTFLSPSLF---HL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~  129 (447)
                      .|++.+++++.+++++....   ..    ...|+++++|+|+|+||.|||+||||++|+++++|||+||+|++|+.+|++
T Consensus         4 ~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~   83 (429)
T 3k28_A            4 FDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE   83 (429)
T ss_dssp             CHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh
Confidence            35688899999998875432   12    256999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      ++.+  ..|+++...+|+++|++.++ +.++|+|+|||+|||+.|+++++.++++++||+++++|||.+..++..++...
T Consensus        84 ~~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~  160 (429)
T 3k28_A           84 RGTS--FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV  160 (429)
T ss_dssp             HCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred             hCcC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence            8643  35678899999999999997 57899999999999999999999999999999999999999999987776443


Q ss_pred             ccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      .....+. .++.....+.....++ +|    .++|++++... ++++++||+||+++++|.+.++++|+++|+++|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~  234 (429)
T 3k28_A          161 ATLGLPDSPGVPEGVAKNTITVAY-ND----LESVKYAFEQF-GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG  234 (429)
T ss_dssp             -----CCCTTCCHHHHTTEEEEET-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred             cccCCCCcCCCCCcccCceeecCC-CC----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence            2222211 1111000011111122 23    67788777643 3479999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaal  365 (447)
                      ++||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+...   .+.+||++||+++++++
T Consensus       235 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~  312 (429)
T 3k28_A          235 ALLIFDEVMTGF-RVA-YNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY  312 (429)
T ss_dssp             CEEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred             CEEEEecccccc-ccC-cchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence            999999999999 999 6788899999999999999999999999999999999988642   36789999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCC
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~G  440 (447)
                      ++|+.++ +++.+++++++++++++|+++..+++.+..+++.|+|+++++.++...     +.|+.....++.+.|+++|
T Consensus       313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  391 (429)
T 3k28_A          313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQG  391 (429)
T ss_dssp             HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCC
Confidence            9999876 789999999999999999999888998999999999999998654321     2245556678999999999


Q ss_pred             ceeec
Q 013235          441 ALFFS  445 (447)
Q Consensus       441 vlv~~  445 (447)
                      |++++
T Consensus       392 v~v~~  396 (429)
T 3k28_A          392 VFLPP  396 (429)
T ss_dssp             EECCS
T ss_pred             eEEec
Confidence            99875

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=2.7e-57  Score=463.90  Aligned_cols=378  Identities=24%  Similarity=0.344  Sum_probs=316.0

Q ss_pred             CCCHHHHHHHHhhhcCCcccc---c----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235           57 GPSADEILAKRKTFLSPSLFH---L----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~  129 (447)
                      .+++.+++++.++++++....   .    ...|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.++++
T Consensus         3 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~   82 (427)
T 3fq8_A            3 TIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME   82 (427)
T ss_dssp             CHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHH
Confidence            356788999999988765432   1    256999999999999999999999999999999999999999999999998


Q ss_pred             hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      ++.+  ..++++...+|+++|++.++ +.++|+|+|||+||++.|+|+++.++++++||+++++|||.+..++..++...
T Consensus        83 ~~~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  159 (427)
T 3fq8_A           83 KGTS--FGAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGV  159 (427)
T ss_dssp             TCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHH
T ss_pred             hCCC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcc
Confidence            8754  23478889999999999997 57899999999999999999999999999999999999999998887765432


Q ss_pred             ccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      .....+. .++.....++....++ +|    .++|+++++.. ++++++||+||+++++|.+.++++|+++|+++|++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~  233 (427)
T 3fq8_A          160 ATLGLPSSPGVPKKTTANTLTTPY-ND----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD  233 (427)
T ss_dssp             HHHTCCSCSSSCHHHHTTEEEEET-TC----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred             cccCCCCCCCCCCcccCceeecCC-CC----HHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            2111111 1221100011111122 24    67888888754 4589999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaal  365 (447)
                      ++||+||||+|| |+| .+++.+++++.||+++|||++++|+|+|++++++++++.+...   .+.+||++||+++++++
T Consensus       234 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~  311 (427)
T 3fq8_A          234 ALLVFDEVITGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI  311 (427)
T ss_dssp             CEEEEECTTTBT-TTB-TTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred             CEEEEecccccc-ccC-cchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHH
Confidence            999999999999 999 6778889999999999999999999999999999999988652   36789999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCC
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~G  440 (447)
                      ++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.++...     ..++.....++.+.|+++|
T Consensus       312 aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G  391 (427)
T 3fq8_A          312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG  391 (427)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCC
Confidence            99999988899999999999999999999888888888999999999998654321     2345555678999999999


Q ss_pred             ceeec
Q 013235          441 ALFFS  445 (447)
Q Consensus       441 vlv~~  445 (447)
                      |++++
T Consensus       392 i~v~~  396 (427)
T 3fq8_A          392 IYLAP  396 (427)
T ss_dssp             EECCS
T ss_pred             cEEec
Confidence            99875

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=1.6e-56  Score=459.87  Aligned_cols=359  Identities=26%  Similarity=0.439  Sum_probs=292.9

Q ss_pred             CCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235           58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~  137 (447)
                      +++++++++.++++.+.   +...|+++++|+|+|+||.||++||||.+|++.+++||+||+|++|+.+|++++.+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~  103 (433)
T 1z7d_A           27 KTPEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA  103 (433)
T ss_dssp             CCHHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred             ccHHHHHHHHHHhcccc---cCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCC
Confidence            45778888888887654   334588999999999999999999999999999999999999999999999987665556


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      |+++...+|+++|++.++  .++|+|+|||+|||+.|+++++.+        +++++||+++++|||.+..++++++...
T Consensus       104 ~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~  181 (433)
T 1z7d_A          104 FFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK  181 (433)
T ss_dssp             SEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred             cCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence            778889999999999984  678999999999999999999864        2568999999999999998887766433


Q ss_pred             ccccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                      ++..+.+  .++..++.         +|    +++|+++++   .+++++||+||+++++|.++++++++++|+++|++|
T Consensus       182 ~~~~~~p~~~~v~~~~~---------~d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  245 (433)
T 1z7d_A          182 CTSNFGPFAPQFSKVPY---------DD----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY  245 (433)
T ss_dssp             ----------CEEEECT---------TC----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred             ccccCCCCCCCeEEeCC---------CC----HHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence            3322111  24444432         23    677888885   237899999999999999999999999999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHH
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA  366 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala  366 (447)
                      |++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+....+.+||++||++++++++
T Consensus       246 g~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  324 (433)
T 1z7d_A          246 NVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE  324 (433)
T ss_dssp             TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred             CCEEEEecCccCCCcCC-cchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence            99999999999999999 688889999999999999999999 8999999999999888766678999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +|+.++++++.+++++++++|+++|+++.++++.+..+++.|+|+++++.++.    .   ...++.+.|+++||++.+
T Consensus       325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~----~---~~~~~~~~l~~~Gv~v~~  396 (433)
T 1z7d_A          325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL----V---NVLDICLKLKENGLITRD  396 (433)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT----C---CHHHHHHHHHHTTEECCE
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh----h---HHHHHHHHHHHCCeEEec
Confidence            99999888899999999999999999987678888889999999999995321    0   145788999999999864

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=3.4e-56  Score=457.36  Aligned_cols=378  Identities=29%  Similarity=0.429  Sum_probs=319.3

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-cccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYL  139 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~  139 (447)
                      ++++++.++++.+....  ..|+++++|+|+|+||.+|++||||++|++++++||+||+|.+|+.++++++.+.+ ..++
T Consensus         7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~   84 (439)
T 3dxv_A            7 ALYDRDGAAIGNLQKLR--FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSAS   84 (439)
T ss_dssp             CHHHHHHHHBCGGGCCC--SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSE
T ss_pred             HHHHHHHHHhccCccCC--CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccC
Confidence            46778888877665433  26899999999999999999999999999999999999999999999999876544 4577


Q ss_pred             chHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC--ccccccC
Q 013235          140 NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN--WKFNVVQ  216 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~--~~~~~~~  216 (447)
                      ++...+++++|++.++.+. ++++|++||+||++.|+++++.++++++||+++++|||.+..++.+++...  ++..+..
T Consensus        85 ~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  164 (439)
T 3dxv_A           85 NAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADG  164 (439)
T ss_dssp             EHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------C
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCC
Confidence            8899999999999998666 799999999999999999999888999999999999999999998877543  4332221


Q ss_pred             --CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          217 --TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       217 --~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                        .++..++.++.+.+.   +.+..+++|++++....++++++||+||+++++|.+.++++|+++|+++|++||++||+|
T Consensus       165 ~~~~~~~~~~~~~~~~~---~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D  241 (439)
T 3dxv_A          165 LILLPYPDPYRPYRNDP---TGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD  241 (439)
T ss_dssp             EEEECCCCSSSCBTTBT---TSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCcEEcCCCcccccc---cHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence              233444444332211   111136788888853335689999999999999999999999999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~  374 (447)
                      |||+||||+| .+++++++++.||+++|||++++|+|+|++++++++++.+....+.+|| +||+++++++++|+.++++
T Consensus       242 E~~~g~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~  319 (439)
T 3dxv_A          242 EVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRD  319 (439)
T ss_dssp             CTTTCTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCcCc-hhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhc
Confidence            9999999999 6788899999999999999999999999999999999988876778999 9999999999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       375 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.++++++++++++.|.++..+++.+..+++.|+|+++++.++..++.|+.....++.+.|+++||++.+
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  390 (439)
T 3dxv_A          320 DLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYY  390 (439)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEee
Confidence            99999999999999999999888998999999999999999876655566666678899999999999864

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=3e-56  Score=458.67  Aligned_cols=359  Identities=26%  Similarity=0.449  Sum_probs=305.8

Q ss_pred             CCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235           57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      .+++++++++..+++.+.   +...|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+|++++.+.+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~  113 (439)
T 2oat_A           37 PPTSDDIFEREYKYGAHN---YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR  113 (439)
T ss_dssp             CCCHHHHHHHHHHHBCCC---CCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT
T ss_pred             CCCHHHHHHHHHHhcccc---cCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC
Confidence            456788888888887665   33468999999999999999999999999999999999999999999999998766555


Q ss_pred             cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCC
Q 013235          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~  208 (447)
                      .|+++...+++++|++.++  .++|+|+|||+||++.|+++++.+        +++++||+++++|||.+..++++++..
T Consensus       114 ~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~  191 (439)
T 2oat_A          114 AFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDP  191 (439)
T ss_dssp             TSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred             ccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCCh
Confidence            5677888999999999884  678999999999999999999864        255899999999999999888876643


Q ss_pred             CccccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235          209 NWKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (447)
Q Consensus       209 ~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~  286 (447)
                      .++..+.+  .++..++.         +|    +++|++.++   .+++++||+||+++++|.++++++++++|+++|++
T Consensus       192 ~~~~~~~p~~~~v~~~~~---------~d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  255 (439)
T 2oat_A          192 TSYDGFGPFMPGFDIIPY---------ND----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR  255 (439)
T ss_dssp             HHHTTSCSCCTTEEEECS---------SC----HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             hcccCCCCCCCCeEEeCC---------CC----HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            22222111  34444443         23    677888775   23789999999999999999999999999999999


Q ss_pred             hCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235          287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       287 ~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal  365 (447)
                      ||++||+||||+||||+| .+|+++++++.||+++|||++++| +|+|++++++++++.+....+.+||++||++++++.
T Consensus       256 ~gillI~DEv~~g~g~~g-~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~  334 (439)
T 2oat_A          256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAI  334 (439)
T ss_dssp             TTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHH
T ss_pred             cCCEEEEeccccCCccCC-cchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHH
Confidence            999999999999999999 688889999999999999999999 899999999999988876667899999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++|+.++++++.+++++++++|+++|+++  .++.+..+++.|+|+++++.++..   .   ...++.+.|+++||++.+
T Consensus       335 aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~---~---~~~~l~~~l~~~Gv~v~~  406 (439)
T 2oat_A          335 AALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETKD---W---DAWKVCLRLRDNGLLAKP  406 (439)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCSS---C---CHHHHHHHHHHTTEECCB
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCcc---H---HHHHHHHHHHHCCeEEec
Confidence            99999988889999999999999999887  467788899999999999964310   1   145788999999999864

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=2.8e-56  Score=457.02  Aligned_cols=384  Identities=33%  Similarity=0.508  Sum_probs=321.9

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~  138 (447)
                      ++.+++++.++++.+....+  .|+++++++|+++||.+|++||||.++.+++++||+||+|.+|+.+++++..+.+..|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~   82 (433)
T 1zod_A            5 DDATFWRNARHHLVRYGGTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEM   82 (433)
T ss_dssp             TCHHHHHHHHHHCCCCSSCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTC
T ss_pred             hhHHHHHHHHHhhccccccc--CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccccc
Confidence            34677888777776643322  5889999999999999999999999999999999999999999999998876555567


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc-CC
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QT  217 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~-~~  217 (447)
                      +++...+++++|++.++.+.++|+|++||+||++.|+++++.++++++||+++++|||.+..++++++...+..-.+ ..
T Consensus        83 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  162 (433)
T 1zod_A           83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV  162 (433)
T ss_dssp             CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence            78888999999999998767899999999999999999998878888999999999999999998876542221111 25


Q ss_pred             CeEeecCCCCcCCCCCCC----hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          218 GVHHALNPDPYRGVFGAD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d----~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                      ++..++.|..++.+|+.+    ....+++|++.+.+..++++++||+||+++++|.++++++|+++|+++|++||++||+
T Consensus       163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~  242 (433)
T 1zod_A          163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL  242 (433)
T ss_dssp             TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred             CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence            788888887777666431    1123677888886533357899999999999999999999999999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHH
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i  371 (447)
                      ||||+||||+| .+++++++++.||+++|||++++|+|+|++++++++++.+....  +.+||++||++++++.++|+.+
T Consensus       243 DEv~~~~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~  321 (433)
T 1zod_A          243 DEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV  321 (433)
T ss_dssp             ECTTTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred             eccccCCCcCc-hHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999 67777888999999999999999999999999999998886533  3489999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++++.+++++++++++++|+++..+++.+..+++.|+|+++++.++..+..++.....++.+.|+++||++.+
T Consensus       322 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  395 (433)
T 1zod_A          322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNI  395 (433)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCE
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEec
Confidence            88889999999999999999998777888888999999999999754222222222356788999999999864

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=4e-56  Score=455.58  Aligned_cols=360  Identities=27%  Similarity=0.410  Sum_probs=291.9

Q ss_pred             cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCC
Q 013235           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGN  157 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~  157 (447)
                      .+.|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.++++.+.+.+. .|+++...+++++|++.++.+
T Consensus         9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~   88 (430)
T 3i4j_A            9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP   88 (430)
T ss_dssp             SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred             CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence            4568999999999999999999999999999999999999999999999998765443 678889999999999999877


Q ss_pred             CceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccccC--C--CeEeecCCCC
Q 013235          158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--T--GVHHALNPDP  227 (447)
Q Consensus       158 ~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~--g~~~~~~p~~  227 (447)
                      .++|+|+|||+||++.|+++++.+      +++++||+++++|||.+..++++++...++.....  .  ++..++.++.
T Consensus        89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (430)
T 3i4j_A           89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDP  168 (430)
T ss_dssp             TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCT
T ss_pred             CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcc
Confidence            889999999999999999999887      78899999999999999998888775444332211  2  5556665554


Q ss_pred             cCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccC-CCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC
Q 013235          228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH  306 (447)
Q Consensus       228 ~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~-~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~  306 (447)
                      +++     ....+++|+++++...++++++||+||++| ++|.+.++++|+++|+++|++||++||+||||+||||+| .
T Consensus       169 ~~~-----~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g-~  242 (430)
T 3i4j_A          169 ARN-----GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-S  242 (430)
T ss_dssp             TSC-----HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S
T ss_pred             cch-----hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-c
Confidence            432     222357788888754445899999999999 999999999999999999999999999999999999999 6


Q ss_pred             ccccccc-CCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC----cccccCCCChHHHHHHHHHHHHHhhhhHHHHH
Q 013235          307 FWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA  380 (447)
Q Consensus       307 ~~~~~~~-gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~----~~~~T~~~np~a~aaala~L~~i~~~~l~~~~  380 (447)
                      +++++++ ++.||++||||++++| +|+|++++++++++.+...    .+.+||++||+++++++++|+.++++++.+++
T Consensus       243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~  322 (430)
T 3i4j_A          243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA  322 (430)
T ss_dssp             SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence            8888999 9999999999999999 9999999999999988753    57799999999999999999999888999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC--HHHHHHHHHHHHhCCceeec
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--KAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~--~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++++++++.|.++.++++.+..+++.|+|+++++.+ ..++.+.  +..+.++.+.|+++||++.+
T Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  388 (430)
T 3i4j_A          323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGD-LATGQAFETPGIASRIGAAALKRGLITYP  388 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-------------CHHHHHHHHHHTTEECC-
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecc-ccccCCCccHHHHHHHHHHHHhCCCEEEe
Confidence            9999999999999988899899999999999999963 2222121  12246789999999999875

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=3.6e-56  Score=462.16  Aligned_cols=372  Identities=23%  Similarity=0.329  Sum_probs=292.7

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc--c
Q 013235           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--Q  132 (447)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~--~  132 (447)
                      .++|++++++++..+++.+.   ..+.|+.+++|+|+||||.|||+||||++|+++++|||+||+|++|+.+|+...  .
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~   98 (472)
T 1ohv_A           22 VPGPRSRELMKQLNIIQNAE---AVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFI   98 (472)
T ss_dssp             SSCHHHHHHHHHHHHHSCCT---TCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHH
T ss_pred             CCCccHHHHHHHHHhhhccc---cccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccc
Confidence            44567888888888887443   223467789999999999999999999999999999999999999999987643  2


Q ss_pred             cccccc---cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-----------c-------------C--
Q 013235          133 HSTVLY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----------T-------------G--  183 (447)
Q Consensus       133 ~~~~~~---~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~-----------t-------------~--  183 (447)
                      +.+..+   ..+...+++++|++.++.+.++|+|+|||+|||+.|||+|+.+           |             |  
T Consensus        99 ~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~  178 (472)
T 1ohv_A           99 NRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCP  178 (472)
T ss_dssp             CCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSC
T ss_pred             cccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCC
Confidence            322111   2344555666666677767889999999999999999999754           1             4  


Q ss_pred             CCeEEEEcCCcccCchhhhhccCCCCc-cccccCCCeEeecCCCCcCCCCCCCh-------HHHHHHHHHHHHccCC--C
Q 013235          184 CNDIISLRNAYHGNAAGTMGATAQSNW-KFNVVQTGVHHALNPDPYRGVFGADG-------EMYAKDVQDLIDFGTS--G  253 (447)
Q Consensus       184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~-~~~~~~~g~~~~~~p~~~~~~~~~d~-------~~~~~~le~~i~~~~~--~  253 (447)
                      +++||+++++|||++.+++++++...+ ....+..++.++++|. ++.++..+.       ...+++|++++....+  .
T Consensus       179 r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  257 (472)
T 1ohv_A          179 DYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK  257 (472)
T ss_dssp             CCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCC
Confidence            589999999999999999999875433 1122223444455542 332221110       1136778888764211  2


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCC--CCEEEeecc-ccCCc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMAKG-IGNGI  330 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~--pDivt~sK~-lg~G~  330 (447)
                      ++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+| .+|+++++|+.  ||++||||+ ++||+
T Consensus       258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~gv~~~~Di~t~sK~~l~GG~  336 (472)
T 1ohv_A          258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGF  336 (472)
T ss_dssp             CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGCCSSCCSEEEECGGGSSEEE
T ss_pred             CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC-CchhccccCCCCCCCEEEEccccccCCc
Confidence            789999999999999999999999999999999999999999999999999 68889999987  999999999 78877


Q ss_pred             cccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecce
Q 013235          331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGF  409 (447)
Q Consensus       331 pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl  409 (447)
                      ++     ++++. .+....+++||++||+++++++++|+.++++++.+++++++++|+++|+++..+++ .+..+++.|+
T Consensus       337 ~~-----~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~  410 (472)
T 1ohv_A          337 FH-----KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT  410 (472)
T ss_dssp             EE-----CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred             cC-----chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCce
Confidence            53     55542 23334577999999999999999999998888999999999999999999877787 4888999999


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |+++++.+        .....++++.|+++||++.+
T Consensus       411 ~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~  438 (472)
T 1ohv_A          411 FCSFDTPD--------ESIRNKLISIARNKGVMLGG  438 (472)
T ss_dssp             EEEEECSS--------HHHHHHHHHHHHHTTEECEE
T ss_pred             EEEEEeCC--------hhHHHHHHHHHHHCCeEEec
Confidence            99998732        22456799999999999864

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=5.8e-56  Score=455.13  Aligned_cols=379  Identities=23%  Similarity=0.329  Sum_probs=307.2

Q ss_pred             CCCCHHHHHHHHhhhcCCcccc----c-cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235           56 DGPSADEILAKRKTFLSPSLFH----L-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (447)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~  130 (447)
                      ++|++++++++.++++.+....    + ...|+++++|+|+|+||.||++||||.+|++++++||+||+|.+|+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~   87 (434)
T 2epj_A            8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR   87 (434)
T ss_dssp             -CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence            4567889999999988654321    2 3459999999999999999999999999999999999999999999999988


Q ss_pred             cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      ..+  ..|+++...+++++|++.++ +.++|+|+|||+||+++|+++||.++++++||+++++|||.+..+++.++....
T Consensus        88 ~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  164 (434)
T 2epj_A           88 GWL--YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAA  164 (434)
T ss_dssp             CSC--CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC----
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcc
Confidence            532  34678889999999999987 578899999999999999999998899999999999999999988876653222


Q ss_pred             cccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      .+..+. .++.....++.+..++ +|    +++|++.+++. ++++++||+||+++++|.++++++|+++|+++|++||+
T Consensus       165 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~  238 (434)
T 2epj_A          165 HYGVPTSAGVPEAVARLTLVTPY-ND----VEALERVFAEY-GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA  238 (434)
T ss_dssp             --CEESSTTCCHHHHTTEEEEET-TC----HHHHHHHHHHH-GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCCCCCcccCceEecCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence            211111 1221000001111122 24    56788777643 24789999999999999999999999999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC-C--cccccCCCChHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA  366 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~-~--~~~~T~~~np~a~aaala  366 (447)
                      +||+||||+|| |+| .+++++++++.||+++|||++++|+|+|++++++++++.+.. .  .+.+||++||++++++.+
T Consensus       239 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a  316 (434)
T 2epj_A          239 LLILDEVVTGF-RLG-LEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA  316 (434)
T ss_dssp             EEEEEETTTTT-TSS-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred             EEEEEcchhce-eCC-cchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence            99999999999 888 577778899999999999999999999999999999988765 2  256899999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCC-----CCCCCHHHHHHHHHHHHhCCc
Q 013235          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~-----~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +|+.++++++.+++++++++|+++|+++..+++.+..+++.|+|+++++.+++.     .+.++.....++.+.|+++||
T Consensus       317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  396 (434)
T 2epj_A          317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGV  396 (434)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCe
Confidence            999998888999999999999999999877777777899999999999964210     112233446779999999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      ++.+
T Consensus       397 ~v~~  400 (434)
T 2epj_A          397 FIAP  400 (434)
T ss_dssp             ECCS
T ss_pred             EEec
Confidence            9874

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=4.7e-55  Score=447.08  Aligned_cols=376  Identities=25%  Similarity=0.358  Sum_probs=306.4

Q ss_pred             CCHHHHHHHHhhhcCCcccc----cc---CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235           58 PSADEILAKRKTFLSPSLFH----LY---SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~----~~---~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~  130 (447)
                      +++++++++.++++.++...    +.   ..|+++++++|+++||.||++||||.+|++++++||+||+|.+|+.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~   83 (424)
T 2e7u_A            4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER   83 (424)
T ss_dssp             HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence            46788999999998654321    21   248999999999999999999999999999999999999999999999988


Q ss_pred             cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      ..+  ..|+++...+++++|+++++ +.++|+|+|||+||++.|+++||.++++++||+++++|||.+..++..++....
T Consensus        84 ~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  160 (424)
T 2e7u_A           84 GLT--FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGAL  160 (424)
T ss_dssp             CSC--CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSC
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCccc
Confidence            532  34678889999999999997 578999999999999999999999999999999999999999988776543222


Q ss_pred             cccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      .+..+. .|+.....++.+..++ +|    +++|++.+++. ++++++||+||+++++|.+.++++|+++|+++ ++||+
T Consensus       161 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~  233 (424)
T 2e7u_A          161 TLGVPSSAGVPEEYAKLTLVLEY-ND----PEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV  233 (424)
T ss_dssp             CBCEESSTTCCHHHHTTEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC
T ss_pred             ccCCCCCCCCCCccCCceEeCCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC
Confidence            211111 1221000001111122 24    56788777642 24789999999999999999999999999999 99999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC-C--cccccCCCChHHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA  366 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~-~--~~~~T~~~np~a~aaala  366 (447)
                      +||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+.. .  .+.+||++||++++++++
T Consensus       234 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  311 (424)
T 2e7u_A          234 LLIADEVMTGF-RLA-FGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLA  311 (424)
T ss_dssp             EEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHH
T ss_pred             EEEEecCcccc-ccc-hhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHH
Confidence            99999999999 888 577778899999999999999999999999999999998865 2  256899999999999999


Q ss_pred             HHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCC-----CCCCCHHHHHHHHHHHHhCC
Q 013235          367 VLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       367 ~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~-----~~~p~~~~~~~~~~~l~~~G  440 (447)
                      +|+.+++ +++.+++++++++++++|+++.++++.+..+++.|+|+++++.+.+.     .+.++.....++.+.|+++|
T Consensus       312 al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  391 (424)
T 2e7u_A          312 TLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRG  391 (424)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCC
Confidence            9999988 88999999999999999999887788777899999999999854210     11223345678999999999


Q ss_pred             ceeec
Q 013235          441 ALFFS  445 (447)
Q Consensus       441 vlv~~  445 (447)
                      |++.+
T Consensus       392 v~v~~  396 (424)
T 2e7u_A          392 IYWPP  396 (424)
T ss_dssp             EECCS
T ss_pred             eEEec
Confidence            99874

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=2.6e-54  Score=436.86  Aligned_cols=340  Identities=30%  Similarity=0.515  Sum_probs=299.8

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN  157 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~  157 (447)
                      +.+.|+++++|+|+++||.||++||||++|++++++||+||+|.+|+.++++++.|....++++...+++++|++.++  
T Consensus        15 ~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--   92 (395)
T 3nx3_A           15 YKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA--   92 (395)
T ss_dssp             GGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--
T ss_pred             cCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--
Confidence            446789999999999999999999999999999999999999999999999988776666788999999999999985  


Q ss_pred             CceEEEcCCHHHHHHHHHHHHHhh-----cCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCC
Q 013235          158 LKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRG  230 (447)
Q Consensus       158 ~~~v~~~~sGseA~e~Aik~ar~~-----t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~  230 (447)
                      .++++|+|||+||++.|+++++.+     +++++||+++++|||.+..++++++...++.....  .++..++.+     
T Consensus        93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  167 (395)
T 3nx3_A           93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----  167 (395)
T ss_dssp             CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----
T ss_pred             CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----
Confidence            578999999999999999999887     67899999999999999999988875444333222  244444332     


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc
Q 013235          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (447)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~  310 (447)
                          |    +++|++.+.    +++++|++||+++++|.+.++++++++|+++|++||++||+||||+||||+| .++++
T Consensus       168 ----d----~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~  234 (395)
T 3nx3_A          168 ----D----ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAY  234 (395)
T ss_dssp             ----C----HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGG
T ss_pred             ----C----HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC-cchhH
Confidence                3    566776653    4789999999999999999999999999999999999999999999999999 68888


Q ss_pred             cccCCCCCEEEeeccccCCccccccccCHHH-HHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235          311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEI-AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       311 ~~~gv~pDivt~sK~lg~G~pigav~~~~~i-~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~  389 (447)
                      +++++.||++|+||++++|+|+|++++++++ ++.+....+..||++||+++++++++|+.++++++.++++++++++++
T Consensus       235 ~~~~~~~d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~  314 (395)
T 3nx3_A          235 EHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQ  314 (395)
T ss_dssp             GGGTCCCSEEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999 888877678899999999999999999999888999999999999999


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|.++..+++.+..+++.|+|+++++.+..        ...++.+.|+++||++++
T Consensus       315 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~  362 (395)
T 3nx3_A          315 SLDELINEFDFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLIS  362 (395)
T ss_dssp             HHHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHhCCCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEec
Confidence            999998888888999999999999985421        146788999999999874

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=6.8e-55  Score=449.77  Aligned_cols=368  Identities=25%  Similarity=0.331  Sum_probs=299.6

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEe-cCCCeEEEecCCcccccCCCCCHHHH-H-HHHH---HHHhcccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVV-D-SIVN---QIKRIQHS  134 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~-~-A~~~---~l~~~~~~  134 (447)
                      +++.++..+++...   .++.++.+++++|+|+|| .||++||||+++++++++||+||+|+ + |+.+   |++++.|.
T Consensus        18 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~   94 (449)
T 2cjg_A           18 DRVHEVLGRSMLVD---GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS   94 (449)
T ss_dssp             GGHHHHHHTTSCCC---SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHhhccc---CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            35666666665322   233344456999999999 99999999999999999999999999 9 9999   99887665


Q ss_pred             cccccchHHHHHHHHHHHhCC-CCCceEEEcCCHHHHHHHHHHHHHhhcC------------CCeEEEEcCCcccCchhh
Q 013235          135 TVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTG------------CNDIISLRNAYHGNAAGT  201 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~-~~~~~v~~~~sGseA~e~Aik~ar~~t~------------~~~ii~~~~~yHG~~~~~  201 (447)
                      +..|.++...+++++|+++++ .+.++|+|+|||+|||+.|+++++.+++            +++||+++++|||++.++
T Consensus        95 ~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~  174 (449)
T 2cjg_A           95 NSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT  174 (449)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred             CcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence            556778889999999999985 4578999999999999999999987765            789999999999999999


Q ss_pred             hhccCC-CCccccccC--CCeEeecCCC--CcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235          202 MGATAQ-SNWKFNVVQ--TGVHHALNPD--PYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (447)
Q Consensus       202 ~~~t~~-~~~~~~~~~--~g~~~~~~p~--~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~  276 (447)
                      +++++. +.++..+.+  .++..++.++  .+++.|..+....+++|++.++.. .+++++||+||+|+++|.++++++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~  253 (449)
T 2cjg_A          175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEF  253 (449)
T ss_dssp             GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHH
T ss_pred             hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHH
Confidence            988875 222222211  3455555443  211011001123356688888653 2478999999999999999999999


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhh-----cCCccc
Q 013235          277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL-----TRRNYF  351 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l-----~~~~~~  351 (447)
                      +++|+++|++||++||+||||+||||+| .+|+++++++.||++||||++    |+|++++++++++.+     ....+.
T Consensus       254 l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~  328 (449)
T 2cjg_A          254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLN  328 (449)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSC
T ss_pred             HHHHHHHHHHCCcEEEEeccccCCCccC-cceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccc
Confidence            9999999999999999999999999999 688888899999999999999    899999999998852     223567


Q ss_pred             ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC-eeeEeecceeEEEEEeeCCCCCCCCHHHHH
Q 013235          352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETL  430 (447)
Q Consensus       352 ~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~vrg~Gl~~giel~~~~~~~~p~~~~~~  430 (447)
                      +||++||+++++++++|+.++++++.+++++++++|+++|+++..+++. +..+++.|+|+++++.+        .....
T Consensus       329 ~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~  400 (449)
T 2cjg_A          329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT--------TADRD  400 (449)
T ss_dssp             CSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS--------HHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC--------hHHHH
Confidence            8999999999999999999988889999999999999999998877886 88899999999998732        12356


Q ss_pred             HHHHHHHhCCceeec
Q 013235          431 YIMDKMKGICALFFS  445 (447)
Q Consensus       431 ~~~~~l~~~Gvlv~~  445 (447)
                      ++.+.|+++||++.+
T Consensus       401 ~~~~~l~~~Gv~v~~  415 (449)
T 2cjg_A          401 ELIRQLWQRAVIVLP  415 (449)
T ss_dssp             HHHHHHHHTTEECEE
T ss_pred             HHHHHHHHCCeEEec
Confidence            789999999999864

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=8.4e-54  Score=437.77  Aligned_cols=356  Identities=29%  Similarity=0.481  Sum_probs=289.0

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~  140 (447)
                      .+++++..+++.+.   +.+.|+++++++|+|+||.||++||||.+|++++++||+||+|.+|+.++++++.+.+..|.+
T Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~   98 (420)
T 2pb2_A           22 AITRATFDEVILPV---YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTN   98 (420)
T ss_dssp             --------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCC
T ss_pred             HHHHHHHHHhhhcc---ccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCC
Confidence            34556666776554   335689999999999999999999999999999999999999999999999987665555778


Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      +...+++++|++.++  .++|+|+|||+||++.|+++++.+      +++++||+++++|||.+..++.+++...++..+
T Consensus        99 ~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~  176 (420)
T 2pb2_A           99 EPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF  176 (420)
T ss_dssp             HHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred             HHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence            899999999999984  578999999999999999999876      577799999999999999888776643222211


Q ss_pred             cC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                      .+  .++..++.         +|    +++|++.+.    +++++||+||+++++|+++++++++++|+++|++||++||
T Consensus       177 ~p~~~~~~~~~~---------~d----~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI  239 (420)
T 2pb2_A          177 GPKPADIIHVPF---------ND----LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLV  239 (420)
T ss_dssp             SSCCSCEEEECT---------TC----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCeEEecC---------CC----HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEE
Confidence            11  23444432         23    577777764    3789999999999999888899999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~  372 (447)
                      +||+|+||||+| .+++++.+++.||+++|||++++|+|+|++++++++++.+....+..||++||+++++++++|+.++
T Consensus       240 ~Dev~~g~~~~g-~~~~~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~  318 (420)
T 2pb2_A          240 FDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN  318 (420)
T ss_dssp             EECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS
T ss_pred             EEcCCcCcccCC-cHHHHHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence            999999999999 6777788899999999999999999999999999998887765577899999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       373 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+++++++++|+++|+++..+++.+..+++.|+|+++++.++..      ....++.+.|+++||++.+
T Consensus       319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~------~~~~~l~~~l~~~Gi~v~~  385 (420)
T 2pb2_A          319 TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYK------GRARDFLYAGAEAGVMVLN  385 (420)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGT------TCHHHHHHHHHHTTEECEE
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCch------HHHHHHHHHHHHCCCEEEe
Confidence            888999999999999999999876778788899999999999853210      0145788999999999864

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=8e-53  Score=434.28  Aligned_cols=373  Identities=22%  Similarity=0.285  Sum_probs=286.5

Q ss_pred             CCHHHHHHHHhhhcCCcccc----ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235           58 PSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~  133 (447)
                      |++++++++.++++.++...    +...|+++++|+|+++||.+|++||||.+|++++++||+||+|.+|+.++++...+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~   91 (453)
T 2cy8_A           12 EGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ   91 (453)
T ss_dssp             HHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS
T ss_pred             chhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC
Confidence            45778999999998765322    33459999999999999999999999999999999999999999999999987533


Q ss_pred             ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                        ..++++...+++++|++.++ +.++|+|+|||+||++.|+++||.++++++||+++++|||.+..++..++. .+...
T Consensus        92 --~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~  167 (453)
T 2cy8_A           92 --YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNS-HFDGQ  167 (453)
T ss_dssp             --SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC---------------------
T ss_pred             --CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCC-ccCCC
Confidence              24678889999999999987 578999999999999999999998889999999999999999887765432 11000


Q ss_pred             ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                      . ..++.....++.+..++ +|    +++|++.+++. ++++++||+||+++++|.++++++|+++|+++|++||++||+
T Consensus       168 ~-~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~  240 (453)
T 2cy8_A          168 P-APGVLPETTANTLLIRP-DD----IEGMREVFANH-GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL  240 (453)
T ss_dssp             ---------CGGGEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             c-CCCCCccccCceeecCC-CC----HHHHHHHHHhc-CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            0 01211100011111122 24    66788777643 247899999999999999999999999999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---C--cccccCCCChHHHHHHHHHH
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~--~~~~T~~~np~a~aaala~L  368 (447)
                      ||||+|| |+| .+++++++++.||++++||++++|+|+|++++++++++.+..   .  .+.+||++||++++++.++|
T Consensus       241 DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal  318 (453)
T 2cy8_A          241 DEVISGF-RVG-NHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI  318 (453)
T ss_dssp             ECTTTTT-TTC-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHH
T ss_pred             ecCcccc-ccC-chhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHH
Confidence            9999999 888 577788899999999999999999999999999999988865   1  25679999999999999999


Q ss_pred             HH-HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEee-----C------CCCCCCCHHHHHHHHHHH
Q 013235          369 KV-IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT-----D------RQLKTPAKAETLYIMDKM  436 (447)
Q Consensus       369 ~~-i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~-----~------~~~~~p~~~~~~~~~~~l  436 (447)
                      +. + ++++.+++++++++++++|+++..+++.+..+++.|+|+++++.+     +      ...+.++.....++.+.|
T Consensus       319 ~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  397 (453)
T 2cy8_A          319 DTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMAL  397 (453)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHH
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHH
Confidence            98 8 778999999999999999999877778777899999999999964     1      011122334456789999


Q ss_pred             HhCCceee
Q 013235          437 KGICALFF  444 (447)
Q Consensus       437 ~~~Gvlv~  444 (447)
                      +++||++.
T Consensus       398 ~~~Gv~v~  405 (453)
T 2cy8_A          398 ILEGVDIG  405 (453)
T ss_dssp             HHTTEECB
T ss_pred             HHCCeEEe
Confidence            99999985

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=3.2e-52  Score=429.20  Aligned_cols=361  Identities=25%  Similarity=0.369  Sum_probs=299.9

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCC
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~  158 (447)
                      +.|+++++|+|+++||.+|++||||.++++++++||+||+|++|+.++++++..... .+.++...+++++|++.++.+.
T Consensus        31 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~  110 (449)
T 3a8u_X           31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL  110 (449)
T ss_dssp             HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            368999999999999999999999999999999999999999999999987642222 5678888999999999998778


Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCC
Q 013235          159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRG  230 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~  230 (447)
                      ++|+|++||+||++.|+++++.++      ++++||+++++|||.+..++.+++...++..+.  ..++..++.|..++.
T Consensus       111 ~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~  190 (449)
T 3a8u_X          111 NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASN  190 (449)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGG
T ss_pred             CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccC
Confidence            899999999999999999998765      678999999999999998888776433222221  246777777765554


Q ss_pred             CCC-CC----hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC
Q 013235          231 VFG-AD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS  305 (447)
Q Consensus       231 ~~~-~d----~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~  305 (447)
                      +|. .|    ....+++|++.+.+..++++++||+||+++++|.+.++++|+++|+++|++||++||+||||+||||+| 
T Consensus       191 ~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-  269 (449)
T 3a8u_X          191 AYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-  269 (449)
T ss_dssp             TTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-
T ss_pred             ccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-
Confidence            321 12    223467888888754334789999999999999999999999999999999999999999999999999 


Q ss_pred             CcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC---------cccccCCCChHHHHHHHHHHHHHhhhh
Q 013235          306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR---------NYFNTFGGNPVCTAAGHAVLKVIQKDK  375 (447)
Q Consensus       306 ~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~---------~~~~T~~~np~a~aaala~L~~i~~~~  375 (447)
                      .+++++.+++.||++++||++++| +|+|++++++++++.+...         .+.+||++||++++++.++|+.+++++
T Consensus       270 ~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~  349 (449)
T 3a8u_X          270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKEN  349 (449)
T ss_dssp             SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcC
Confidence            677888899999999999999998 8999999999999888653         356799999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       376 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+++++++++++++|+++ .+++.+..+++.|+|+++++..+....  . ....++.+.|+++||++.+
T Consensus       350 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~--~-~~~~~~~~~l~~~Gv~v~~  415 (449)
T 3a8u_X          350 LVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGDA--I-VRPFEAGMALWKAGFYVRF  415 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTBS--S-HHHHHHHHHHHHHTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcccc--c-ccHHHHHHHHHHCCcEEec
Confidence            9999999999999999884 347777889999999999996432111  0 0123588899999999864

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=7.1e-51  Score=415.76  Aligned_cols=365  Identities=30%  Similarity=0.471  Sum_probs=297.1

Q ss_pred             HHHHHHHHhhh-cCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCC-CHHHHHHHHHHHHhcccc-cc
Q 013235           60 ADEILAKRKTF-LSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHS-TV  136 (447)
Q Consensus        60 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~~~-~~  136 (447)
                      +.++++++.++ +.+.... +..|+++++++|+++||.+|++||||.++.+++++||+ ||+|++|+.+++++..+. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~   81 (419)
T 2eo5_A            3 SRKIIEESDIYLATSTRDP-ELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAN   81 (419)
T ss_dssp             HHHHHHHHHHHSCCCCCSS-CCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCS
T ss_pred             hHHHHHHHHhhhccccccc-cCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcccccc
Confidence            45677777777 6665433 23689999999999999999999999999999999999 999999999999876542 24


Q ss_pred             cccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Cccccc
Q 013235          137 LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNV  214 (447)
Q Consensus       137 ~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~  214 (447)
                      .|+++...+++++|++.++.+ .++|+|+|||+||++.|+++++.++ +++||+++++|||.+..++++++.. .++...
T Consensus        82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~  160 (419)
T 2eo5_A           82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIV  160 (419)
T ss_dssp             CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence            577888899999999999866 5789999999999999999988766 7899999999999999999887653 333222


Q ss_pred             c--CCCeEeecCCCCcCCCCCCC----h--H--HHHHHHH-HHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235          215 V--QTGVHHALNPDPYRGVFGAD----G--E--MYAKDVQ-DLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (447)
Q Consensus       215 ~--~~g~~~~~~p~~~~~~~~~d----~--~--~~~~~le-~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~  282 (447)
                      .  ..++..++.++.++.+|+.+    .  +  ..+++|+ +.+... .++++++||+||+++++|.+.++++++++|++
T Consensus       161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  240 (419)
T 2eo5_A          161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK  240 (419)
T ss_dssp             CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence            1  14677777777666666531    0  0  1256787 777642 12478999999999999998889999999999


Q ss_pred             HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHH
Q 013235          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCT  361 (447)
Q Consensus       283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~  361 (447)
                      +|++||++||+||||+|||++| .+++++++++.||++||||++++| +|+|+++++++++ .+ ...+.+||++||+++
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~  317 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALAC  317 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHHHH
T ss_pred             HHHHcCCEEEEeccccCCccCc-chhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHHHH
Confidence            9999999999999999999999 577778889999999999999999 9999999999988 66 445678999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       362 aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +++.++|+.+++  +.+++++++++|++.|.++      +..+++.|+|+++++..       ...... +.+.|+++||
T Consensus       318 ~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~-------~~~~~~-~~~~l~~~Gv  381 (419)
T 2eo5_A          318 AIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE-------KKVRDR-IIGESFKRGL  381 (419)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------HHHHHH-HHHHHHHTTE
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------CccHHH-HHHHHHHCCC
Confidence            999999998765  8899999999999888664      45789999999998831       112245 8889999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      ++.+
T Consensus       382 ~v~~  385 (419)
T 2eo5_A          382 LLLP  385 (419)
T ss_dssp             ECEE
T ss_pred             EEec
Confidence            9874

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=4.3e-49  Score=403.32  Aligned_cols=366  Identities=26%  Similarity=0.362  Sum_probs=295.2

Q ss_pred             HHHhhhcCCccccc-cCCCeE-EEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-ccccch
Q 013235           65 AKRKTFLSPSLFHL-YSKPLN-VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYLNH  141 (447)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~p~~-~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~~~  141 (447)
                      ...+++++.....+ ...|++ +++++|+++||.+|++|||+.++.+++++||+||+|.+|+.+++++..+.. ..|+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~   86 (429)
T 1s0a_A            7 AFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHA   86 (429)
T ss_dssp             HHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECH
T ss_pred             hHHHHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCH
Confidence            33445554433222 223665 899999999999999999999999999999999999999999998764432 356788


Q ss_pred             HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC-----CCeEEEEcCCcccCchhhhhccCCCC-cccccc
Q 013235          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-----CNDIISLRNAYHGNAAGTMGATAQSN-WKFNVV  215 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~-----~~~ii~~~~~yHG~~~~~~~~t~~~~-~~~~~~  215 (447)
                      ...+++++|+++++.+.++|+|++||+||++.|+++++.+++     +++||+++++|||.+..++.+++... ++....
T Consensus        87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~  166 (429)
T 1s0a_A           87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK  166 (429)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence            889999999999987778999999999999999998876654     78999999999999998887765432 221111


Q ss_pred             --CCCeEeecCCCCc-CCCCC-CChHHHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235          216 --QTGVHHALNPDPY-RGVFG-ADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGL  290 (447)
Q Consensus       216 --~~g~~~~~~p~~~-~~~~~-~d~~~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~l  290 (447)
                        ..++..++.|..+ ...|+ .|    +++|++.+... ++++++|++||+ ++++|.+.++++++++|+++|++||++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~  241 (429)
T 1s0a_A          167 GYLPENLFAPAPQSRMDGEWDERD----MVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL  241 (429)
T ss_dssp             TTSCCCEEECCCCSBC-CCCCGGG----GHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred             CCCCCceEeCCCcccccccchHHH----HHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence              1355666655421 11221 23    56777777643 247899999999 999999999999999999999999999


Q ss_pred             EEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-----cccccCCCChHHHHHH
Q 013235          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAAG  364 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-----~~~~T~~~np~a~aaa  364 (447)
                      ||+||||+|||++| .+++++++++.||+++|||++++| +|+|++++++++++.+...     .+..||++|+++++++
T Consensus       242 li~De~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~  320 (429)
T 1s0a_A          242 LIADEIATGFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA  320 (429)
T ss_dssp             EEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred             EEEeehhhCCcccc-hHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHH
Confidence            99999999999999 567778889999999999999999 9999999999999888653     2557999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .++|+.++++++.+++++++++|+++|+++.. ++.+..+++.|+|+++++.+.     .   ...++.+.|+++||++.
T Consensus       321 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-----~---~~~~l~~~l~~~Gi~v~  391 (429)
T 1s0a_A          321 NASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-----V---NMAALQKFFVEQGVWIR  391 (429)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-----B---CHHHHHHHHHHTTEECC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-----c---cHHHHHHHHHHCCCEEe
Confidence            99999998888999999999999999988643 666777899999999998431     0   13568889999999986


Q ss_pred             c
Q 013235          445 S  445 (447)
Q Consensus       445 ~  445 (447)
                      +
T Consensus       392 ~  392 (429)
T 1s0a_A          392 P  392 (429)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=1.9e-48  Score=397.36  Aligned_cols=381  Identities=29%  Similarity=0.487  Sum_probs=310.0

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-cc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VL  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~  137 (447)
                      ++++++++..+++++....+  .|+++.+++|+++||.+|++||||.++.+++++||+||+|.+|+.++++...+.. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~   80 (426)
T 1sff_A            3 SNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV   80 (426)
T ss_dssp             CHHHHHHHHHHHSCTTBCCS--EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred             hHHHHHHHHHHhcCcccccc--CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccc
Confidence            56778888888887654432  3889999999999999999999999999999999999999999999998765432 34


Q ss_pred             ccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc
Q 013235          138 YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV  215 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~  215 (447)
                      ++++...+|+++|+++++++. ++|+|++||+||++.++++++.++++.+|++++++|||....++.+++.. .++....
T Consensus        81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~  160 (426)
T 1sff_A           81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  160 (426)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccC
Confidence            668889999999999996434 78999999999999999988877777799999999999998777766532 2221211


Q ss_pred             C--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          216 Q--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       216 ~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                      .  .++..++.+..+++   .+....+++|++.+... .++++++|++||+++++|.+.++++++++|.++|++||++||
T Consensus       161 ~~~~~v~~v~~~~~~~~---~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li  237 (426)
T 1sff_A          161 LMPGHVYRALYPCPLHG---ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  237 (426)
T ss_dssp             CCCSSEEEECCCBGGGT---BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCcEEeCCCccccc---cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            1  24555655432221   01111256788777631 124789999999988899888899999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~  372 (447)
                      +||+|+||+++| .+++++.+++.||+++|||++++|+|+|++++++++++.+....+..||++|+++++++.++|+.++
T Consensus       238 ~De~~~~~~~~g-~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~  316 (426)
T 1sff_A          238 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  316 (426)
T ss_dssp             EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             EechhhccCccc-chhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999 6777788899999999999999999999999999999888765567899999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       373 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+++++++++++++|+++...++.+..+++.|+|+++++......+.|......++.+.|+++||++.+
T Consensus       317 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~  389 (426)
T 1sff_A          317 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLS  389 (426)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEE
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEec
Confidence            8889999999999999999998666777778889999999999643222234444567789999999999874

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=7.6e-49  Score=396.19  Aligned_cols=348  Identities=26%  Similarity=0.457  Sum_probs=299.2

Q ss_pred             HHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchH
Q 013235           63 ILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA  142 (447)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~  142 (447)
                      ++++.++++.+.   +...|+++++|+|+++||.||++||||.++++++++||+||+|.+|+.++++.+.+....++++.
T Consensus         3 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~   79 (392)
T 3ruy_A            3 IIELTDTYGANN---YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQ   79 (392)
T ss_dssp             HHHHHHHHBCTT---CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETT
T ss_pred             HHHHHHhhhhcc---CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHH
Confidence            566667777654   44568999999999999999999999999999999999999999999999998877666677888


Q ss_pred             HHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       143 ~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..+++++|++.++  .++++|++||++|++.|+++++..        +++++||+..++|||.+..++++++...++...
T Consensus        80 ~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (392)
T 3ruy_A           80 LGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF  157 (392)
T ss_dssp             HHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC
T ss_pred             HHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc
Confidence            9999999999985  678999999999999999998876        667899999999999999999887765444332


Q ss_pred             cC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                      .+  .++..++.         +|    .++|++.+.    .++++|+++|+++++|.+.++++|+++|.++|++||++||
T Consensus       158 ~~~~~~~~~~~~---------~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li  220 (392)
T 3ruy_A          158 GPMLPGIIVIPY---------GD----LEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFV  220 (392)
T ss_dssp             CSCCSSEEEECT---------TC----HHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEE
T ss_pred             CCCCCCCeeeCc---------cc----HHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            21  23333322         23    577777765    3789999999999999999999999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      +||+|+|||++| ..++.+.+++.||+++|||++++| +|+|++++++++++.+....+..+|+.|+++++++.++|+.+
T Consensus       221 ~De~~~~~~~~g-~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  299 (392)
T 3ruy_A          221 ADEIQTGLGRTG-KVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVL  299 (392)
T ss_dssp             EECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH
T ss_pred             EeechhCCCccc-cchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999 677888899999999999999999 899999999999988877677889999999999999999998


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++++.++++++.+++++.|+++  .++.+..+++.|.++++.+..          ...++.+.|+++||++.+
T Consensus       300 ~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~g~~~~~~~~~----------~~~~l~~~l~~~gi~v~~  361 (392)
T 3ruy_A          300 EEEKLTERSLQLGEKLVGQLKEI--DNPMITEVRGKGLFIGIELNE----------PARPYCEQLKAAGLLCKE  361 (392)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHTTC--CCTTEEEEEEETTEEEEEESS----------CSHHHHHHHHTTTEECCC
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHh--cCCCceEEEeeeeEEEEEEcc----------hHHHHHHHHHHCCcEEec
Confidence            88889999999999999998876  335678899999999999742          135688999999999875

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=4.6e-48  Score=391.77  Aligned_cols=342  Identities=31%  Similarity=0.536  Sum_probs=295.7

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN  157 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~  157 (447)
                      +...|+++++|+|+++||.+|++||||.++.+++++||+||+|.+|+.++++++.+....+.++...+++++|++.++  
T Consensus        18 ~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--   95 (406)
T 4adb_A           18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--   95 (406)
T ss_dssp             CCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--
T ss_pred             cCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--
Confidence            345689999999999999999999999999999999999999999999999987666566778889999999999985  


Q ss_pred             CceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcC
Q 013235          158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYR  229 (447)
Q Consensus       158 ~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~  229 (447)
                      .++++|++||++|++.|+++++.+      +++++||+.+++||+....+...++...+...+..  .++..++.+    
T Consensus        96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  171 (406)
T 4adb_A           96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN----  171 (406)
T ss_dssp             CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT----
T ss_pred             CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC----
Confidence            458999999999999999988776      67899999999999999999888775544333222  244444332    


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       230 ~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                           |    .++|++.+.    +++++|+++|++++||+++++.+++++|.++|++||++||+||+|+||+++| ..++
T Consensus       172 -----d----~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~  237 (406)
T 4adb_A          172 -----D----INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYA  237 (406)
T ss_dssp             -----C----HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSH
T ss_pred             -----c----HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhHH
Confidence                 2    566766653    4789999999999999998899999999999999999999999999999999 6777


Q ss_pred             ccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235          310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       310 ~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~  389 (447)
                      ++.+++.||++||+|++++|+|+|++++++++++.+....+..||++|+++++++.++|+.++++++.++++++.+++++
T Consensus       238 ~~~~~~~~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~  317 (406)
T 4adb_A          238 YMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVE  317 (406)
T ss_dssp             HHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999998887777889999999999999999998888899999999999999


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|+++...+..+.++++.|+++++++.++..      ....++.+.|+++||++.+
T Consensus       318 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~  367 (406)
T 4adb_A          318 RLNTINHRYGLFSEVRGLGLLIGCVLNADYA------GQAKQISQEAAKAGVMVLI  367 (406)
T ss_dssp             HHHHHHHHHCCEEEEEEETTEEEEEECTTTT------TCHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHhCCCceEEEEEEEEEEEEEeCCcH------HHHHHHHHHHHHCCcEEee
Confidence            9999877778888999999999999954210      1246789999999999864

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=1.7e-44  Score=365.23  Aligned_cols=338  Identities=33%  Similarity=0.561  Sum_probs=280.7

Q ss_pred             cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC
Q 013235           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL  158 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~  158 (447)
                      ...|+++.+++|+++||.+|++||||.+++++.++||+||+|.+|+.++++...+.+..|+.+...+++++|+++++  .
T Consensus        20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~   97 (397)
T 2ord_A           20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--G   97 (397)
T ss_dssp             CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--S
T ss_pred             cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--C
Confidence            45689999999999999999999999999988999999999999999999887654445677889999999999984  5


Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhh-----cCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCC
Q 013235          159 KVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGV  231 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~-----t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~  231 (447)
                      ++++|++||++|++.|++.++.+     +++++||+++++|||....++...+...++..+.  ..++..++.       
T Consensus        98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------  170 (397)
T 2ord_A           98 GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------  170 (397)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------
T ss_pred             CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------
Confidence            78999999999999999988754     4677899999999999987666554321111110  123444432       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~  311 (447)
                        +|    .++|++.+.    +++++|+++|+++++|.+.++.+++++|.++|++||++||+||+|+||+++| ..+.++
T Consensus       171 --~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~  239 (397)
T 2ord_A          171 --NN----VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQ  239 (397)
T ss_dssp             --TC----HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHH
T ss_pred             --CC----HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc-cchhhh
Confidence              13    567777764    3789999999999999977789999999999999999999999999999998 566667


Q ss_pred             ccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       312 ~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L  391 (447)
                      .+++.||+++|+|.+++|+|+|+++++++++ .+....+..||++|+++++++.++|+.++++++.++++++++++++.|
T Consensus       240 ~~~~~~d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L  318 (397)
T 2ord_A          240 KYGVVPDVLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL  318 (397)
T ss_dssp             HHTCCCSEEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred             hhCCCCCeeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7888899999999999999999999999887 665445668999999999999999999887789999999999999999


Q ss_pred             HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++..+++.+..+++.|.++++++.++.        ...++.+.|+++||++.+
T Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~  364 (397)
T 2ord_A          319 QEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVP  364 (397)
T ss_dssp             HHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEcc
Confidence            9876567777778899999999884321        145788999999999864

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=1.1e-43  Score=358.88  Aligned_cols=355  Identities=29%  Similarity=0.478  Sum_probs=285.5

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~  140 (447)
                      +++++..++|++.....+...|+++++++|+++||.+|+.||||.++.+++++||++|+|.+|+.++++...+.+..|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~   86 (395)
T 1vef_A            7 EDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT   86 (395)
T ss_dssp             --CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred             HHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCC
Confidence            34566666675411012345688999999999999999999999999988899999999999999999886554445677


Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc-cC-CC
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-VQ-TG  218 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~-~~-~g  218 (447)
                      +...+++++|+++++.+.+++++++||++|++.+++.++.++++++||+++++||+....++...+...+.... +. .+
T Consensus        87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~  166 (395)
T 1vef_A           87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP  166 (395)
T ss_dssp             HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred             HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCC
Confidence            88899999999999766788999999999999999988766678899999999999988776654432111111 00 12


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  298 (447)
                      +..++.         .|    .++|++.+.    +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+
T Consensus       167 ~~~~~~---------~d----~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~  229 (395)
T 1vef_A          167 VEFIPY---------ND----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  229 (395)
T ss_dssp             EEEECT---------TC----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             eeEeCC---------Cc----HHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            222221         23    567777764    2689999999999999998899999999999999999999999999


Q ss_pred             CccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHH
Q 013235          299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN  378 (447)
Q Consensus       299 Gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~  378 (447)
                      ||+++| ..+.++.+++.||+++|+|.+++|+|+|++++++++++.+....+..|++.|+++++++.++|+.++++++.+
T Consensus       230 ~~~~~g-~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  308 (395)
T 1vef_A          230 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE  308 (395)
T ss_dssp             TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred             CCccCC-chhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            999988 5666677888999999999999999999999999998888765567889999999999999999887777889


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       379 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +++++.+++++.|+++.  .+.+..+++.|.++++++..+          ..++.+.|+ ++||++.+
T Consensus       309 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~  364 (395)
T 1vef_A          309 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQ  364 (395)
T ss_dssp             HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHHHHHHHHHhh--cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEec
Confidence            99999999999887752  244556788999999988421          256888898 89999864

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=2.2e-41  Score=339.09  Aligned_cols=330  Identities=35%  Similarity=0.580  Sum_probs=269.4

Q ss_pred             CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~  159 (447)
                      ..|+.+.+++|+++||.+|+.||||.++...+++||.+|.+.+|+.++++...+....|+++...+++++|+++++.+ +
T Consensus         9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~-~   87 (375)
T 2eh6_A            9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTE-G   87 (375)
T ss_dssp             CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSC-E
T ss_pred             CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCC-C
Confidence            468899999999999999999999999988789999999999999999987654444567778889999999998542 7


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCCC
Q 013235          160 VVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGVF  232 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~~  232 (447)
                      ++++++||++|++.++++++.++     ++++|++.+++||+....+...++...+.....  ..++..++.        
T Consensus        88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  159 (375)
T 2eh6_A           88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL--------  159 (375)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT--------
T ss_pred             eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC--------
Confidence            89999999999999999876544     558999999999999988777654332211110  123333332        


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~  312 (447)
                       .|    .++|++.+.    +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|+|||++| ..+.++.
T Consensus       160 -~d----~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~  229 (375)
T 2eh6_A          160 -ND----IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQH  229 (375)
T ss_dssp             -TC----HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGG
T ss_pred             -ch----HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhh
Confidence             12    566666553    3789999999999999998899999999999999999999999999999888 4556677


Q ss_pred             cCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013235          313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       313 ~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~  392 (447)
                      ++..||+++|||.+++|+|+|++++++++++.+....+..+|+.|+++++++.++|+.++  ++.++++++.+++++.|+
T Consensus       230 ~~~~~d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~  307 (375)
T 2eh6_A          230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLK  307 (375)
T ss_dssp             GTCCCSEEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999988877765567889999999999999998876  678888999999998887


Q ss_pred             HHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       393 ~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.    . ..+++.|+++++++..+          ..++++.|+++||++.+
T Consensus       308 ~~~----~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~  345 (375)
T 2eh6_A          308 ELG----K-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINC  345 (375)
T ss_dssp             HTT----S-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEE
T ss_pred             HHh----c-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEec
Confidence            752    2 45678899999987421          24688889999999864

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=1.2e-35  Score=303.11  Aligned_cols=330  Identities=13%  Similarity=0.065  Sum_probs=238.4

Q ss_pred             CCCeEEEeecccEEEecC--CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--
Q 013235           80 SKPLNVVDGKMQYLFDEN--GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--  155 (447)
Q Consensus        80 ~~p~~~~~g~G~~l~d~d--G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~--  155 (447)
                      ..+++.++|+|+++||.+  |+.||||..+..  .+ ++||+|.+|+.++++...+....+..+...++++.+.+.++  
T Consensus        40 ~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~  116 (421)
T 3l8a_A           40 FTTRPDRLNQFTYKWKTSENNPELLQMWVADM--DF-LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYA  116 (421)
T ss_dssp             CSCCCCCTTTTBTTTGGGTTCTTCEECCSSCC--CS-CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred             CCcccccCCCCCccccccCCCCCeeecccCCC--CC-CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            456778899999999999  899999976643  33 48999999999999875333222335666778888887765  


Q ss_pred             CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCC
Q 013235          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (447)
Q Consensus       156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (447)
                      ...++|+|+|||+||++.|++.+..  ++++|++..++||+....+...+.           .+..++.. +..+.|..|
T Consensus       117 ~~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~-----------~~~~~~~~-~~~~~~~~d  182 (421)
T 3l8a_A          117 VVKEDILFIDGVVPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDH-----------RLVENSLQ-IINGRFEID  182 (421)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTE-----------EEEEEECE-EETTEEECC
T ss_pred             CCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCC-----------EEEecccc-ccCCCeeeC
Confidence            4567899999999999999997643  457899999999997765544321           11122211 011112234


Q ss_pred             hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-----
Q 013235          236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-----  310 (447)
Q Consensus       236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-----  310 (447)
                          +++|++.+..   .++++|+++++++++|.+ ++++++++|+++|++||++||+||||++|+++|.....+     
T Consensus       183 ----~~~le~~i~~---~~~~~vil~~p~nptG~~-~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  254 (421)
T 3l8a_A          183 ----FEQLEKDIID---NNVKIYLLCSPHNPGGRV-WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA  254 (421)
T ss_dssp             ----HHHHHHHHHH---TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT
T ss_pred             ----HHHHHHHhhc---cCCeEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc
Confidence                6778887763   268899999999999954 578889999999999999999999999999988422222     


Q ss_pred             cccCCCCCEEEeecccc-CCccccccccC-HHHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHH
Q 013235          311 EAHGVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGS  385 (447)
Q Consensus       311 ~~~gv~pDivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~  385 (447)
                      +..+..+++.+++|+++ +|+|+|+++++ +++++.+.... ...++++|+++++++.++|+..++  +++.++++++.+
T Consensus       255 ~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~  334 (421)
T 3l8a_A          255 SYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIK  334 (421)
T ss_dssp             TGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            22355577888999998 89999999998 89988886543 345668999999999999985321  234444455555


Q ss_pred             HHHHHHHHHHHhcCCeeeEeecceeEE-EEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          386 YLKERLTALKDKYGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~g-iel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      +|++.|++    ++.+..+++.|.++. +++.....       ...++.+.|++ .||++.+
T Consensus       335 ~l~~~L~~----~~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~  385 (421)
T 3l8a_A          335 LVIKELEA----KTKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLND  385 (421)
T ss_dssp             HHHHHHHH----HCSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEE
T ss_pred             HHHHHHHh----CCCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEEC
Confidence            55555544    355777888888877 88743210       12467888875 5999864

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=8.9e-34  Score=289.88  Aligned_cols=333  Identities=14%  Similarity=0.100  Sum_probs=247.8

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEE-eecccEEEecCCCeEEEecCCcccccCC-CCCHHHHHHHHHHHHhcccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVV-DGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHSTV  136 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~l~~~~~~~~  136 (447)
                      .++++.++..+.......  ++.+..+. +++|+++|| ||++||||.+|.   ++| |+||+|.+|+.+++++......
T Consensus        26 ~~~~~~~~~~~~~~~g~~--~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~~   99 (427)
T 2w8t_A           26 KFDGLIAERQKLLDSGVT--DPFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGTC   99 (427)
T ss_dssp             GGHHHHHHHHHHHHTTCC--CTTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred             HHHHHHHHHHHHHHcCCc--ceeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCCc
Confidence            456677766666554411  23345677 999999999 999999999884   578 6899999999999987432111


Q ss_pred             -----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          137 -----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       137 -----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                           ...++...+|+++|+++++  .+.+++++||++||..+++..   +++.+.|.+...+|+....++...+     
T Consensus       100 ~~~~~~G~~~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~al~~l---~~~gd~vl~~~~~h~~~~~~~~~~g-----  169 (427)
T 2w8t_A          100 GSRMLNGTFHDHMEVEQALRDFYG--TTGAIVFSTGYMANLGIISTL---AGKGEYVILDADSHASIYDGCQQGN-----  169 (427)
T ss_dssp             SCTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHH---SCTTCEEEEETTCCHHHHHHHHHSC-----
T ss_pred             ccccccCCcHHHHHHHHHHHHHhC--CCceEEecCcHHHHHHHHHHh---cCCCCEEEECCcccHHHHHHHHHcC-----
Confidence                 1245778899999999984  356789999999999998864   3444555556667776655554432     


Q ss_pred             ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE
Q 013235          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (447)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll  291 (447)
                             ...+.+|.       +|    .++|++++....++++++|++||+++++|.+.+    +++|+++|++||+++
T Consensus       170 -------~~~~~~~~-------~d----~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~l  227 (427)
T 2w8t_A          170 -------AEIVRFRH-------NS----VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMV  227 (427)
T ss_dssp             -------SEEEEECT-------TC----HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEE
T ss_pred             -------CeeEEeCC-------CC----HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEE
Confidence                   22222221       34    677888887542237899999999999999886    999999999999999


Q ss_pred             EEeccccCc--cccCCCcccccccCCCCC----EEEeeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHH
Q 013235          292 IADEVQAGF--ARTGSHFWGFEAHGVVPD----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAA  363 (447)
Q Consensus       292 I~DEv~tGf--gr~G~~~~~~~~~gv~pD----ivt~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aa  363 (447)
                      |+||+|+++  +++| .. ..+.+++.||    +.+++|.+|  .|.|++++++++++.+...  .+..|++.||+.+++
T Consensus       228 i~Dea~~~~~~~~~g-~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa  303 (427)
T 2w8t_A          228 LVDEAHSMGFFGPNG-RG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVAT  303 (427)
T ss_dssp             EEECTTTTTTSSTTS-CC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHH
T ss_pred             EEECCccccccCCCC-Cc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHH
Confidence            999999974  4445 22 3466787776    668999996  5669999999998888754  234577889999999


Q ss_pred             HHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          364 GHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       364 ala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +.++|+.+++ +++.+++++++++|++.|+++  .+....  .+ .|.++++++.        +.....++.+.|+++||
T Consensus       304 ~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~Gi  371 (427)
T 2w8t_A          304 ATTSIRKLMTAHEKRERLWSNARALHGGLKAM--GFRLGT--ETCDSAIVAVMLE--------DQEQAAMMWQALLDGGL  371 (427)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH--TCEESC--SSCCSSEEEEEES--------SHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCcccC--CCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCe
Confidence            9999998876 678899999999999999886  332211  33 6788898883        22346789999999999


Q ss_pred             eeec
Q 013235          442 LFFS  445 (447)
Q Consensus       442 lv~~  445 (447)
                      ++.+
T Consensus       372 ~v~~  375 (427)
T 2w8t_A          372 YVNM  375 (427)
T ss_dssp             ECEE
T ss_pred             EEee
Confidence            9864

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=7.2e-31  Score=264.44  Aligned_cols=316  Identities=16%  Similarity=0.194  Sum_probs=234.4

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCC-CCCHHHHHHHHHHHHhcccccc--c---ccchHHHHHHHHHH
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHSTV--L---YLNHAIADFAEALA  151 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~l~~~~~~~~--~---~~~~~~~elae~L~  151 (447)
                      .++.|..+.+++|.|++| +|++||||.+|   .++| |++|++.+++.++++...+...  .   ...+...+++++|+
T Consensus        23 ~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la   98 (399)
T 3tqx_A           23 LYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDIS   98 (399)
T ss_dssp             CCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHH
T ss_pred             CccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHH
Confidence            345677889999999999 99999999988   4678 7999999999999987643221  1   24667889999999


Q ss_pred             HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      ++++.  +..++++||++|++.+++...  .+++.|++. ..+|+.........+            ...+..|.     
T Consensus        99 ~~~~~--~~~i~~~sGt~a~~~~l~~~~--~~gd~v~~~-~~~~~~~~~~~~~~g------------~~~~~~~~-----  156 (399)
T 3tqx_A           99 EFLGT--DDTILYSSCFDANGGLFETLL--GPEDAIISD-ELNHASIIDGIRLCK------------AQRYRYKN-----  156 (399)
T ss_dssp             HHHTC--SEEEEESCHHHHHHTTHHHHC--CTTCEEEEE-TTCCHHHHHHHHSCC------------SEEEEECT-----
T ss_pred             HHHCC--CcEEEECchHHHHHHHHHHhc--CCCCEEEEC-CcccHHHHHHHHHcC------------CceeEeCC-----
Confidence            99854  356677899999999987543  234455554 445555544444332            22222221     


Q ss_pred             CCCChHHHHHHHHHHHHccCC--CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCc-cccCCCc
Q 013235          232 FGADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGF-ARTGSHF  307 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~--~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGf-gr~G~~~  307 (447)
                        .|    .+++++.+.....  .++++|+++++++++|.+.+    +++|.++|++||+++|+||+| .|+ ++.| . 
T Consensus       157 --~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-  224 (399)
T 3tqx_A          157 --NA----MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENG-R-  224 (399)
T ss_dssp             --TC----TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-
T ss_pred             --CC----HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-C-
Confidence              22    3456666654221  27899999999999999886    999999999999999999999 464 5554 2 


Q ss_pred             ccccccCC--CCCEE--EeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHH-h-hhhHHHH
Q 013235          308 WGFEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVI-Q-KDKLQNN  379 (447)
Q Consensus       308 ~~~~~~gv--~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i-~-~~~l~~~  379 (447)
                      +..+.+++  .+|++  +++|.++ |+|.|++++++++++.+....  +..+...|+++++++.++|+.+ + .+++.++
T Consensus       225 ~~~~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  303 (399)
T 3tqx_A          225 GTPEYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQ  303 (399)
T ss_dssp             CHHHHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             chHHhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHH
Confidence            34466676  78999  7999999 778899999999998886532  2234578899999999999987 3 3567888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       380 ~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+++.+.|+++  .+..   +++.|.++++++.+        .....++.+.|+++||++.+
T Consensus       304 ~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~v~~  356 (399)
T 3tqx_A          304 LQENSRYFRAGMEKL--GFQL---VPGNHPIIPVMLGD--------AQLATNMADHLLQEGIYVVG  356 (399)
T ss_dssp             HHHHHHHHHHHHHHH--TCCB---CCCSSSEEEEEEEC--------HHHHHHHHHHHHHTTEECCE
T ss_pred             HHHHHHHHHHHHHHc--CCCc---CCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCCEEee
Confidence            999999999999887  3332   36788999998842        23457899999999999863

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.98  E-value=4.7e-31  Score=266.52  Aligned_cols=317  Identities=15%  Similarity=0.208  Sum_probs=234.7

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccc--cccc---chHHHHHHHHHH
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST--VLYL---NHAIADFAEALA  151 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~--~~~~---~~~~~elae~L~  151 (447)
                      .++.|..+.+++|+|+||.+|++||||.+|   .++|| ++|++.+|+.++++.+.+..  ..|.   .+...+++++|+
T Consensus        24 ~~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la  100 (401)
T 1fc4_A           24 LFKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA  100 (401)
T ss_dssp             CCCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred             CeeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHH
Confidence            345688899999999999999999999988   36897 89999999999998754321  1232   577889999999


Q ss_pred             HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      ++++.+  ..++++||++|++.+++.+.   ++.+.|.+...+|+....++...            |...+..|.     
T Consensus       101 ~~~g~~--~~i~~~sGs~a~~~~~~~~~---~~gd~v~~~~~~~~~~~~~~~~~------------g~~~~~~~~-----  158 (401)
T 1fc4_A          101 AFLGME--DAILYSSCFDANGGLFETLL---GAEDAIISDALNHASIIDGVRLC------------KAKRYRYAN-----  158 (401)
T ss_dssp             HHHTCS--EEEEESCHHHHHHTTHHHHC---CTTCEEEEETTCCHHHHHHHHTS------------CSEEEEECT-----
T ss_pred             HHhCCC--cEEEeCChHHHHHHHHHHHc---CCCCEEEEcchhHHHHHHHHHHc------------CCceEEECC-----
Confidence            998654  56678999999999988653   34444445555665554443322            222333221     


Q ss_pred             CCCChHHHHHHHHHHHHccCCC--CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCc-cccCCCc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGF-ARTGSHF  307 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~--~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGf-gr~G~~~  307 (447)
                        .|    .+++++.+....++  ++++|++++.++++|.+.+    +++|.++|++||+++|+||+| .|+ +++| ..
T Consensus       159 --~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~  227 (401)
T 1fc4_A          159 --ND----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENG-RG  227 (401)
T ss_dssp             --TC----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CC
T ss_pred             --CC----HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCC-Cc
Confidence              23    46677766532111  5789999999999999876    999999999999999999999 488 3566 33


Q ss_pred             ccccccCCCC--CEE--EeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhh-hhHHHHH
Q 013235          308 WGFEAHGVVP--DIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNA  380 (447)
Q Consensus       308 ~~~~~~gv~p--Div--t~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~-~~l~~~~  380 (447)
                      + .+.+++.+  |++  +++|.++++. .|++++++++++.+....  +..+++.|+++++++.++|+.+++ +++.+++
T Consensus       228 ~-~~~~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  305 (401)
T 1fc4_A          228 S-HEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRL  305 (401)
T ss_dssp             H-HHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             c-HHHcCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            2 34455544  888  7899997654 599999999998876532  334778899999999999998764 5688889


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.+++.+.|+++  .+..+   ++.|.++++++.+        .....++.+.|+++||++.+
T Consensus       306 ~~~~~~l~~~L~~~--g~~~~---~~~~~~~~~~~~~--------~~~~~~l~~~l~~~gi~v~~  357 (401)
T 1fc4_A          306 WANARQFREQMSAA--GFTLA---GADHAIIPVMLGD--------AVVAQKFARELQKEGIYVTG  357 (401)
T ss_dssp             HHHHHHHHHHHHHT--TCCBC---CSSSSEEEEEEEC--------HHHHHHHHHHHHHTTEECCE
T ss_pred             HHHHHHHHHHHHHc--CCccc---CCCCCEEEEEcCC--------hHHHHHHHHHHHHCCcEEee
Confidence            99999999998876  33332   5788999998832        22356789999999999864

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.97  E-value=1.4e-30  Score=261.53  Aligned_cols=327  Identities=9%  Similarity=-0.004  Sum_probs=229.7

Q ss_pred             eEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--CCCce
Q 013235           83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNLKV  160 (447)
Q Consensus        83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~--~~~~~  160 (447)
                      ++.++++|+++||.+|++||||..|..  .+ +.+|.|.+|+.++++...+.......+...++++.+.+.++  .+.++
T Consensus        11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~   87 (391)
T 3dzz_A           11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW   87 (391)
T ss_dssp             SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred             hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence            667789999999999999999997743  34 48999999999998864332111234556677777777654  45678


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cCCCCCCChHHH
Q 013235          161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGADGEMY  239 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~d~~~~  239 (447)
                      |+|++||++|++.+++...  .+++.|++..++||+....+...             |...+..|.. ..+.|..|    
T Consensus        88 i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d----  148 (391)
T 3dzz_A           88 CVFASGVVPAISAMVRQFT--SPGDQILVQEPVYNMFYSVIEGN-------------GRRVISSDLIYENSKYSVN----  148 (391)
T ss_dssp             EEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCHHHHHHHHHT-------------TCEEEECCCEEETTEEECC----
T ss_pred             EEECCCHHHHHHHHHHHhC--CCCCeEEECCCCcHHHHHHHHHc-------------CCEEEEeeeeecCCceeec----
Confidence            9999999999999999763  35688999999999876655433             2222222221 11222234    


Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCC
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPD  318 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pD  318 (447)
                      .++|++.+..   .++.+|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|++.|.....+..++. .||
T Consensus       149 ~~~l~~~l~~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d  224 (391)
T 3dzz_A          149 WADLEEKLAT---PSVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN  224 (391)
T ss_dssp             HHHHHHHHTS---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred             HHHHHHHHhc---cCceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence            6778887753   2667777777788888875 5677999999999999999999999999988843444444442 378


Q ss_pred             ----EEEeecccc-CCccccccccC-HHHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q 013235          319 ----IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       319 ----ivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~  389 (447)
                          +.+++|.+| +|+|+|+++++ +++++.+.... ...+++.|+++++++.++|+..+  -++..++.+++.+++.+
T Consensus       225 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  304 (391)
T 3dzz_A          225 WVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE  304 (391)
T ss_dssp             GEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence                446889998 89999999997 99988876532 34567899999999999997632  12344555556666666


Q ss_pred             HHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          390 RLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .|++.   ++.+..+... |.++.+++....       ....++.+.|+ ++||++.+
T Consensus       305 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~  352 (391)
T 3dzz_A          305 FLAKE---VPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISA  352 (391)
T ss_dssp             HHHHH---CTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEE
T ss_pred             HHHhh---CCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeC
Confidence            65552   2333333334 444557764211       01457888896 89999874

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=3.6e-29  Score=251.91  Aligned_cols=322  Identities=11%  Similarity=0.022  Sum_probs=201.2

Q ss_pred             EEEeecccEEEecCCC-----eEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc---ch-HHHHHHHHHHHhC
Q 013235           84 NVVDGKMQYLFDENGR-----RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL---NH-AIADFAEALASKM  154 (447)
Q Consensus        84 ~~~~g~G~~l~d~dG~-----~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~---~~-~~~elae~L~~~~  154 (447)
                      +-.+|+|+++||.+|+     ++|||..+..  .+| .+|+|.+|+.++++...   ..|.   .+ ...++++.+.+..
T Consensus         8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~~~~~lr~~la~~l~~~~   81 (390)
T 1d2f_A            8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGV---FGYSRWKNDEFLAAIAHWFSTQH   81 (390)
T ss_dssp             ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCC---CCCCCSCCHHHHHHHHHHHHHHS
T ss_pred             ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCC---CCCCCCChHHHHHHHHHHHHHhc
Confidence            4468999999999998     7899977654  577 78999999999986521   1222   23 4445555555444


Q ss_pred             C--CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          155 P--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       155 ~--~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                      +  .+.++|++++||++|++.+++...  .++++|++.+++||+....+...+.           .+..++.. ...+.|
T Consensus        82 g~~~~~~~v~~t~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~-~~~~~~  147 (390)
T 1d2f_A           82 YTAIDSQTVVYGPSVIYMVSELIRQWS--ETGEGVVIHTPAYDAFYKAIEGNQR-----------TVMPVALE-KQADGW  147 (390)
T ss_dssp             CCCCCGGGEEEESCHHHHHHHHHHHSS--CTTCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECE-ECSSSE
T ss_pred             CCCCCHHHEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHHHHHHHHHCCC-----------EEEEeecc-cCCCcc
Confidence            3  456789999999999999999653  2457899999999997765543211           11222211 001123


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~  312 (447)
                      ..|    .++|++.+..   .++++|++...++++|.+. +.+++++|.++|++||+++|+||+|++|.++|..+..+. 
T Consensus       148 ~~d----~~~l~~~l~~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~-  218 (390)
T 1d2f_A          148 FCD----MGKLEAVLAK---PECKIMLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS-  218 (390)
T ss_dssp             ECC----HHHHHHHHTS---TTEEEEEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG-
T ss_pred             ccC----HHHHHHHhcc---CCCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHH-
Confidence            234    5778877753   2566666555577788775 678999999999999999999999999988773222222 


Q ss_pred             cCCCC---C-EEEeecccc-CCccccccccC-HHHHHhhcCCcc-cccC-CCChHHHHHHHHHHHHHhh--hhHHHHHHH
Q 013235          313 HGVVP---D-IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNY-FNTF-GGNPVCTAAGHAVLKVIQK--DKLQNNAHV  382 (447)
Q Consensus       313 ~gv~p---D-ivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~~-~~T~-~~np~a~aaala~L~~i~~--~~l~~~~~~  382 (447)
                       .+.+   | +.+++|.++ +|+|+|+++++ +++++.+..... ..+| +.|+++++++.++|+..++  ++..+++++
T Consensus       219 -~~~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  297 (390)
T 1d2f_A          219 -NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKD  297 (390)
T ss_dssp             -GTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             -HcchhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             2222   3 788999998 89999999985 788887765444 4566 7899999999999975321  123334444


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeEeecc-eeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          383 VGSYLKERLTALKDKYGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~~vrg~G-l~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +.+++.+.|++.   ++.+..+++.| +++++++....       ....++.+.|+ ++||++.+
T Consensus       298 ~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~  352 (390)
T 1d2f_A          298 NLTYIADKMNAA---FPELNWQIPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMP  352 (390)
T ss_dssp             HHHHHHHHHHHH---CSSCCCCCCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEE
T ss_pred             HHHHHHHHHHhh---CCCCEEecCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeC
Confidence            444454444431   33344445555 45567774210       01356888998 68999864

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.97  E-value=1.3e-28  Score=247.28  Aligned_cols=313  Identities=16%  Similarity=0.180  Sum_probs=231.1

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCC-CCCHHHHHHHHHHHHhccc--ccccc---cchHHHHHHHHHH
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQH--STVLY---LNHAIADFAEALA  151 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~l~~~~~--~~~~~---~~~~~~elae~L~  151 (447)
                      +++.|+.+.+++|++++ .+|++||||.+|..   +| |.+|++.+|+.++++...+  ....|   ..+...+++++|+
T Consensus        19 ~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la   94 (384)
T 1bs0_A           19 ALRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELA   94 (384)
T ss_dssp             CCCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHH
T ss_pred             CccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHH
Confidence            34668889999999999 89999999998743   67 5899999999999987432  11222   3477889999999


Q ss_pred             HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      ++++.  +.+++++||++|+..+++..   .++.+.|.+...+|+....++...+            ...+..|.     
T Consensus        95 ~~~g~--~~~i~~~sGt~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~-----  152 (384)
T 1bs0_A           95 EWLGY--SRALLFISGFAANQAVIAAM---MAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAH-----  152 (384)
T ss_dssp             HHHTC--SEEEEESCHHHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECT-----
T ss_pred             HHhCC--CcEEEeCCcHHHHHHHHHHh---CCCCcEEEEcccccHHHHHHHHHcC------------CCEEEeCC-----
Confidence            99854  46778899999999999864   3445556666677776665554432            22222221     


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-Cc-cccCCCccc
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWG  309 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gf-gr~G~~~~~  309 (447)
                        .|    .++|++.+....+ ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. |+ +++| ..+ 
T Consensus       153 --~d----~~~l~~~l~~~~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~-  219 (384)
T 1bs0_A          153 --ND----VTHLARLLASPCP-GQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGS-  219 (384)
T ss_dssp             --TC----HHHHHHHHHSCCS-SCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCH-
T ss_pred             --CC----HHHHHHHHHhcCC-CCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCC-Cch-
Confidence              23    5678888875322 4689999999999999886    9999999999999999999995 43 5556 332 


Q ss_pred             ccccCCCCCEE--EeeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHH
Q 013235          310 FEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHV  382 (447)
Q Consensus       310 ~~~~gv~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~  382 (447)
                      .+.++..||++  +++|.++.  +.|++++++++++.+...  .+..+++.|+++++++.++|+.+++   +++.+++++
T Consensus       220 ~~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  297 (384)
T 1bs0_A          220 CWLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAA  297 (384)
T ss_dssp             HHHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            25566779998  89999973  448999999998877642  2334557899999999999998863   356777888


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          383 VGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+++.+.|+++    ++  .+ .+.|.++++++.+        .....++.+.|+++||++.+
T Consensus       298 ~~~~l~~~L~~~----g~--~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~gi~v~~  347 (384)
T 1bs0_A          298 LITRFRAGVQDL----PF--TLADSCSAIQPLIVGD--------NSRALQLAEKLRQQGCWVTA  347 (384)
T ss_dssp             HHHHHHHHHTTS----SC--EECSCCSSBCCEEEES--------HHHHHHHHHHHHHTTEECCE
T ss_pred             HHHHHHHHHHhc----CC--cccCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCcEEEe
Confidence            888888877664    21  23 3678888888732        22356789999999999864

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.97  E-value=1.2e-30  Score=261.09  Aligned_cols=319  Identities=13%  Similarity=0.046  Sum_probs=218.5

Q ss_pred             EEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHhCC--CCCce
Q 013235           84 NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASKMP--GNLKV  160 (447)
Q Consensus        84 ~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-~~~~~~~~~~elae~L~~~~~--~~~~~  160 (447)
                      ...+|+|+++||.+|++||||.+|..  .++ .+|+|.+|+.+++....+. .... .+....+++.+.+..+  .+.++
T Consensus         8 ~~~~~~g~~~~d~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~   83 (377)
T 3fdb_A            8 EDLRARNTMKWTRYGQGVLPLWVAES--DFS-TCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEW   83 (377)
T ss_dssp             HHHHHTCCHHHHSSCTTSEECCSSCC--CSC-CCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGG
T ss_pred             HHhcCCCCceeeccCCCeeeecccCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHH
Confidence            34589999999999999999998853  455 8999999999999863221 1111 3444445555544322  45678


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235          161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (447)
                      +++++||++|++.+++...  .+++.|++..++||+....+...+.           .+..++....      .|    .
T Consensus        84 i~~t~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~------~d----~  140 (377)
T 3fdb_A           84 IFPIPDVVRGLYIAIDHFT--PAQSKVIVPTPAYPPFFHLLSATQR-----------EGIFIDATGG------IN----L  140 (377)
T ss_dssp             EEEESCHHHHHHHHHHHHS--CTTCCEEEEESCCTHHHHHHHHHTC-----------CEEEEECTTS------CC----H
T ss_pred             EEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEccCCCC------CC----H
Confidence            9999999999999998653  2567899999999987765544321           1222322111      23    6


Q ss_pred             HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC-CCc---ccccccCCC
Q 013235          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHF---WGFEAHGVV  316 (447)
Q Consensus       241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G-~~~---~~~~~~gv~  316 (447)
                      +++++.+..   +..+.++.+| ++++|.+. +.+.+++|.++|++||+++|+||+|++|+++| ...   +.++..+..
T Consensus       141 ~~l~~~l~~---~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  215 (377)
T 3fdb_A          141 HDVEKGFQA---GARSILLCNP-YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC  215 (377)
T ss_dssp             HHHHHHHHT---TCCEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE
T ss_pred             HHHHHHhcc---CCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE
Confidence            778888764   2335555555 77888765 67779999999999999999999999998877 322   222223444


Q ss_pred             CCEEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH
Q 013235          317 PDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       317 pDivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~  392 (447)
                      +++.+++|.+| +|+|+|++++ ++++++.+....+..+++.|+++++++.++|+..++  ++..++.+++.+++.+.|+
T Consensus       216 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  295 (377)
T 3fdb_A          216 ITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIP  295 (377)
T ss_dssp             EEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778999997 7999997665 789988887666667899999999999999985422  3345555666666666665


Q ss_pred             HHHHhcCCeeeEeeccee-EEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          393 ALKDKYGIIGDVRGRGFL-LGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       393 ~l~~~~~~i~~vrg~Gl~-~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      +.   ++.+..++..|.+ +++++.....        ..++++.|+++ ||++.+
T Consensus       296 ~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gi~v~~  339 (377)
T 3fdb_A          296 KR---IPGAKITPMQATYLMWIDFRDTTI--------EGSPSEFFIEKAKVAMND  339 (377)
T ss_dssp             HH---STTCEECCCSBCSEEEEECTTSCC--------CSCHHHHHHHHHCEECEE
T ss_pred             hh---CCCceEecCCeeEEEEEECcccCC--------CHHHHHHHHHhCCEEecC
Confidence            53   2333334444444 4677743211        12467777776 999874

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.97  E-value=5e-30  Score=257.58  Aligned_cols=325  Identities=12%  Similarity=0.040  Sum_probs=224.0

Q ss_pred             eEEEeecccEEEecCCCeE-----EEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--
Q 013235           83 LNVVDGKMQYLFDENGRRY-----LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--  155 (447)
Q Consensus        83 ~~~~~g~G~~l~d~dG~~y-----lD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~--  155 (447)
                      ++..+++|+++||.+|++|     |||..+..   -.+.+|+|.+|+.+++....+....+..+...++++.|++.++  
T Consensus        11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~   87 (391)
T 4dq6_A           11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM---DFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK   87 (391)
T ss_dssp             CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC---SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccCCceeeeecccccCCCCceeccccCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4456889999999987655     99987753   2347899999999999864333233456677888888888765  


Q ss_pred             CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC--cCCCCC
Q 013235          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFG  233 (447)
Q Consensus       156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~--~~~~~~  233 (447)
                      .+.+++++++||++|++.+++.+.  .+++.|++..++||+....+...             |...+..|..  ..+.|.
T Consensus        88 ~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~  152 (391)
T 4dq6_A           88 IKSEWLIYSPGVIPAISLLINELT--KANDKIMIQEPVYSPFNSVVKNN-------------NRELIISPLQKLENGNYI  152 (391)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCTHHHHHHHHT-------------TCEEEECCCEECTTSCEE
T ss_pred             CcHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCHHHHHHHHHc-------------CCeEEeeeeeecCCCceE
Confidence            456789999999999999999763  35688999999999876655433             2222222222  112222


Q ss_pred             CChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc
Q 013235          234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH  313 (447)
Q Consensus       234 ~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~  313 (447)
                      .|    .+++++.+..     +.+++++..++++|.+. +++.+++|.++|++||+++|+||+|++|+++|.....+..+
T Consensus       153 ~d----~~~l~~~l~~-----~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  222 (391)
T 4dq6_A          153 MD----YEDIENKIKD-----VKLFILCNPHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI  222 (391)
T ss_dssp             CC----HHHHHHHCTT-----EEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             ee----HHHHHHHhhc-----CCEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHc
Confidence            34    5677777642     66677766688888765 67779999999999999999999999998887422222222


Q ss_pred             -----CCCCCEEEeecccc-CCccccccccCH-HHHHhhcCC-cccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 013235          314 -----GVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVV  383 (447)
Q Consensus       314 -----gv~pDivt~sK~lg-~G~pigav~~~~-~i~~~l~~~-~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~  383 (447)
                           +....+.+++|.+| +|+|+|++++++ ++++.+... .+..+++.|+++++++.++|+..++  ++..++.+++
T Consensus       223 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (391)
T 4dq6_A          223 SKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESN  302 (391)
T ss_dssp             CHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                 22233557899998 799999999875 888877653 2345678899999999999975321  2233444444


Q ss_pred             HHHHHHHHHHHHHhcCCeeeEeecceeEE-EEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          384 GSYLKERLTALKDKYGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g-iel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      .+++.+.|++.   ++.+..+++.|.++. +++....       ....++.+.|+++ ||++.+
T Consensus       303 ~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~  356 (391)
T 4dq6_A          303 IDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQ  356 (391)
T ss_dssp             HHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEE
T ss_pred             HHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeC
Confidence            44444444432   344445556665554 7764311       0145788999998 999864

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.97  E-value=1.2e-29  Score=257.26  Aligned_cols=302  Identities=16%  Similarity=0.092  Sum_probs=222.9

Q ss_pred             eecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccc---c--cccchHHHHHHHHHHHhCCCCCce
Q 013235           87 DGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST---V--LYLNHAIADFAEALASKMPGNLKV  160 (447)
Q Consensus        87 ~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~---~--~~~~~~~~elae~L~~~~~~~~~~  160 (447)
                      ++.+.+++|.+|++||||.++.   .+|+ .||+|.+|+.+++++.....   .  ....+...+++++|+++++.  +.
T Consensus        47 ~~~~~~~~~~~g~~~ld~~s~~---~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~  121 (409)
T 3kki_A           47 NGKHLVLGKQASPDDIILQSND---YLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--DE  121 (409)
T ss_dssp             TSSCTTCCCCCCTTSEECCCSC---TTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--SE
T ss_pred             CCCeeeeCCCCCCceEEeeccC---ccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--Ce
Confidence            5678889999999999998864   3444 58999999999998853211   1  11235567899999998853  45


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235          161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (447)
                      +++++||++|++.+++...   ++.+.|.+...+|+....++...+            ...++++.       .|    .
T Consensus       122 ~i~~~sGt~a~~~~l~~~~---~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~-------~d----~  175 (409)
T 3kki_A          122 CLLSQSGWNANVGLLQTIC---QPNTNVYIDFFAHMSLWEGARYAN------------AQAHPFMH-------NN----C  175 (409)
T ss_dssp             EEEESCHHHHHHHHHHHHC---CTTCEEEEETTSCHHHHHHHHHTT------------CEEEEECT-------TC----H
T ss_pred             EEEecchHHHHHHHHHHhc---CCCCEEEECCCcCHHHHHHHHHcC------------CeEEEecC-------CC----H
Confidence            6788999999999998543   444445555666666655554432            22222221       23    6


Q ss_pred             HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC--ccccCCCcccccccCC--C
Q 013235          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGV--V  316 (447)
Q Consensus       241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--fgr~G~~~~~~~~~gv--~  316 (447)
                      ++|++.+...   ++++|+++++++++|.+.+    +++|+++|++||++||+||+|++  ||++| ..+. +.+++  .
T Consensus       176 ~~le~~l~~~---~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~~~-~~~~~~~~  246 (409)
T 3kki_A          176 DHLRMLIQRH---GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG-AGLL-AELGLTRE  246 (409)
T ss_dssp             HHHHHHHHHH---CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHH-HHHTCGGG
T ss_pred             HHHHHHHHhc---CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Ccch-hhcCCCCC
Confidence            7788888642   3589999999999998876    99999999999999999999998  88888 3333 55666  5


Q ss_pred             CCE--EEeeccccCCccccccccCHHHHHhhcCCcc--cccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Q 013235          317 PDI--VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       317 pDi--vt~sK~lg~G~pigav~~~~~i~~~l~~~~~--~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L  391 (447)
                      +||  .+++|++++|  .|++++++++++.+.....  ..+...+++++++++++|+.+++ +++.++++++.++|++.|
T Consensus       247 ~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L  324 (409)
T 3kki_A          247 VHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGL  324 (409)
T ss_dssp             CSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            778  5789999876  5889999988877654322  23334789999999999998865 467788889999999988


Q ss_pred             HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++  .+.    +.+.|.++++.+.+        .....++.+.|+++||++.
T Consensus       325 ~~~--g~~----~~~~~~~~~~~~~~--------~~~~~~~~~~L~~~Gv~v~  363 (409)
T 3kki_A          325 SQL--GLT----IRSESQIIGLETGD--------ERNTEKVRDYLESNGVFGS  363 (409)
T ss_dssp             HTT--TCC----CCCSSSEEEEEEES--------HHHHHHHHHHHHHTTEECE
T ss_pred             HHc--CCc----cCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEe
Confidence            876  332    34688999999843        2335678999999999985

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.97  E-value=6.8e-29  Score=246.78  Aligned_cols=311  Identities=16%  Similarity=0.101  Sum_probs=212.3

Q ss_pred             CeEEEeecccEEEe-cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCce
Q 013235           82 PLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV  160 (447)
Q Consensus        82 p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~  160 (447)
                      ++.+.+|...+.++ .+|+++|||.+|..  +++ .+|+|.+|+.++++..    ..|+++...+++++|+++++.+.++
T Consensus         8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~   80 (361)
T 3ftb_A            8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNL----GVYPDVNYRRLNKSIENYLKLKDIG   80 (361)
T ss_dssp             --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGG----GSCCCTTCHHHHHHHHHHHTCCSCE
T ss_pred             CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHhCCCcce
Confidence            34455555444444 48999999999876  455 6899999999998874    2345566788999999998766789


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235          161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (447)
                      ++|++||++|++.+++.+      ++|++..++||+....+...             |...+..|....+.+  +    +
T Consensus        81 i~~~~g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~--~----~  135 (361)
T 3ftb_A           81 IVLGNGASEIIELSISLF------EKILIIVPSYAEYEINAKKH-------------GVSVVFSYLDENMCI--D----Y  135 (361)
T ss_dssp             EEEESSHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCTTSCC--C----H
T ss_pred             EEEcCCHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHc-------------CCeEEEeecCcccCC--C----H
Confidence            999999999999999855      78999999999876655433             222222222111122  2    4


Q ss_pred             HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE
Q 013235          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV  320 (447)
Q Consensus       241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv  320 (447)
                      +++++.+..    ..+.++.+| ++++|.+. +.+.+++|.++|++||+++|+||+|++|.+.+ ........+..++++
T Consensus       136 ~~l~~~l~~----~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i  208 (361)
T 3ftb_A          136 EDIISKIDD----VDSVIIGNP-NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP-SSSFVGEIKNYSCLF  208 (361)
T ss_dssp             HHHHHHTTT----CSEEEEETT-BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT-TSSSGGGTTTCSSEE
T ss_pred             HHHHHhccC----CCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCc-ccchhHhcccCCCEE
Confidence            677777652    234444555 66777765 67789999999999999999999999987752 233334444445544


Q ss_pred             ---Eeecccc-CCccccccc-cCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235          321 ---TMAKGIG-NGIPLGAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       321 ---t~sK~lg-~G~pigav~-~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                         +++|.++ +|+++|+++ .++++++.+...  ..+|+.|+++++++.++|+.   ++..++.++..+..++.|.+..
T Consensus       209 ~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l  283 (361)
T 3ftb_A          209 IIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEEL  283 (361)
T ss_dssp             EEEESSSTTSCGGGCCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeChhhcCCCCcceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHH
Confidence               6899998 799999998 899999988753  34788999999999998862   3444555555555555555555


Q ss_pred             HhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          396 DKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       396 ~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+. .+++.|.++++++...         ...++.+.|+++||++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~gi~v~~  325 (361)
T 3ftb_A          284 NKIGFIKRVFSPHANFVLCRLENI---------SGEKLYDSLLKEDIVIRR  325 (361)
T ss_dssp             HHSSSEEEEECCSSSEEEEEESSS---------CHHHHHHHHHTTTEECEE
T ss_pred             HhCCCCceecCCCCeEEEEEcCCC---------CHHHHHHHHHHCCeEEee
Confidence            5666666 7788899999888431         145788999999999875

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.96  E-value=3.5e-28  Score=245.34  Aligned_cols=313  Identities=12%  Similarity=0.110  Sum_probs=229.5

Q ss_pred             cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHH
Q 013235           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALAS  152 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~  152 (447)
                      ++.|+.+.+++|+|+| .+|+.||||.+|..   +|| .+|.+.+++.++++...+...     .+..+...++++.|++
T Consensus        24 ~~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   99 (398)
T 3a2b_A           24 YAYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSA   99 (398)
T ss_dssp             CCSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred             ccceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence            4568889999999999 99999999998754   677 799999999999877532111     1235678899999999


Q ss_pred             hCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       153 ~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                      .++  .+++++++||++|++.+++.+.  .+++.|++..++| +....++...+            ...+..|.      
T Consensus       100 ~~g--~~~v~~~~ggt~a~~~~~~~~~--~~gd~V~~~~p~~-~~~~~~~~~~g------------~~~~~v~~------  156 (398)
T 3a2b_A          100 YVG--KEAAILFSTGFQSNLGPLSCLM--GRNDYILLDERDH-ASIIDGSRLSF------------SKVIKYGH------  156 (398)
T ss_dssp             HHT--CSEEEEESSHHHHHHHHHHHSS--CTTCEEEEETTCC-HHHHHHHHHSS------------SEEEEECT------
T ss_pred             HhC--CCcEEEECCHHHHHHHHHHHHh--CCCCEEEECCccC-HHHHHHHHHcC------------CceEEeCC------
Confidence            885  3689999999999999998663  2345566665554 44444443332            22222221      


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc--cccCCCcccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGF  310 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf--gr~G~~~~~~  310 (447)
                       .|    .++|++.+....++++++|+++++++++|.+.+    +++|.++|++||+++|+||+|..+  ++++ ..+ .
T Consensus       157 -~d----~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~-~  225 (398)
T 3a2b_A          157 -NN----MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKG-AGT-A  225 (398)
T ss_dssp             -TC----HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred             -CC----HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCC-Cch-H
Confidence             23    577888887532226789999999999998875    999999999999999999999643  4545 222 3


Q ss_pred             cccCCC--CCEE--EeeccccC-CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHH
Q 013235          311 EAHGVV--PDIV--TMAKGIGN-GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHV  382 (447)
Q Consensus       311 ~~~gv~--pDiv--t~sK~lg~-G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~  382 (447)
                      +.+++.  +|++  +++|.++. |   |++++++++++.+...  .+..+...+++.++++.++|+.++. +++.+++++
T Consensus       226 ~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~  302 (398)
T 3a2b_A          226 SHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWK  302 (398)
T ss_dssp             HHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred             hhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            445653  6888  79999983 5   8899999998887652  2455667778888788888887643 367788888


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+++.+.|+++  .+..   +++.|.++++++.        ......++.+.|+++||++.+
T Consensus       303 ~~~~l~~~L~~~--g~~~---~~~~g~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~  352 (398)
T 3a2b_A          303 NTDYAKAQLLDH--GFDL---GATESPILPIFIR--------SNEKTFWVTKMLQDDGVFVNP  352 (398)
T ss_dssp             HHHHHHHHHHHT--TCCB---CSCCSSEEEEECC--------CHHHHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHhc--CCCc---CCCCCCEEEEEcC--------CHHHHHHHHHHHHHCCcEEEe
Confidence            899999888876  3332   3456889888872        223356789999999999875

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.96  E-value=1.6e-29  Score=255.06  Aligned_cols=323  Identities=11%  Similarity=0.004  Sum_probs=216.2

Q ss_pred             EEEeecccEEEecCCC-------eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh---
Q 013235           84 NVVDGKMQYLFDENGR-------RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK---  153 (447)
Q Consensus        84 ~~~~g~G~~l~d~dG~-------~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~---  153 (447)
                      +..+|+|+++||.+|+       .+|||.++..  .++ .+|.|.+|+.++++...   ..|... ..++++.|+++   
T Consensus         9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~-~~~l~~~la~~l~~   81 (399)
T 1c7n_A            9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETV---LGYTGP-TEEYKKTVKKWMKD   81 (399)
T ss_dssp             CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCC---CSSBCC-CHHHHHHHHHHHHH
T ss_pred             ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCC---CCCCCC-cHHHHHHHHHHHHH
Confidence            3457999999998884       7899987763  466 68999999999987531   223332 44555555554   


Q ss_pred             -CC--CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cC
Q 013235          154 -MP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YR  229 (447)
Q Consensus       154 -~~--~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~  229 (447)
                       ++  .+.++|++++||++|++.+++...  .++++|++.+++||+....+...             |...+..|.. ..
T Consensus        82 ~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~  146 (399)
T 1c7n_A           82 RHQWDIQTDWIINTAGVVPAVFNAVREFT--KPGDGVIIITPVYYPFFMAIKNQ-------------ERKIIECELLEKD  146 (399)
T ss_dssp             HHCCCCCGGGEEEESSHHHHHHHHHHHHC--CTTCEEEECSSCCTHHHHHHHTT-------------TCEEEECCCEEET
T ss_pred             HhCCCCChhhEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHc-------------CCEEEecccccCC
Confidence             33  446789999999999999998653  24578999999999977655432             2222222221 11


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       230 ~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                      +.|..|    .++|++.+..   .++++|++...++++|.+. |++++++|.++|++||+++|+||+|++|+++|.....
T Consensus       147 g~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~  218 (399)
T 1c7n_A          147 GYYTID----FQKLEKLSKD---KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV  218 (399)
T ss_dssp             TEEECC----HHHHHHHHTC---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred             CCEEEc----HHHHHHHhcc---CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc
Confidence            122234    6778877752   2567777766678888765 6789999999999999999999999999887732333


Q ss_pred             cccc-----CCCCCEEEeecccc-CCccccccccC-HHHHHhhcCCcccccC-CCChHHHHHHHHHHHHHhhhhHHHHHH
Q 013235          310 FEAH-----GVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAH  381 (447)
Q Consensus       310 ~~~~-----gv~pDivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l~~~~~  381 (447)
                      +..+     +...++.+++|.++ +|+|+|+++++ +++++.+.......++ +.|+++++++.++|+..  ++..++.+
T Consensus       219 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~  296 (399)
T 1c7n_A          219 FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCI  296 (399)
T ss_dssp             GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHH
T ss_pred             HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHH
Confidence            3222     22334457899999 89999999997 6788877654334444 57999999999998743  23344444


Q ss_pred             HHHHHHHHHHHHHHHh-cCCeeeEeeccee-EEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          382 VVGSYLKERLTALKDK-YGIIGDVRGRGFL-LGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~-~~~i~~vrg~Gl~-~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +..+..++.|.+..++ ++.+..+++.|.+ +++++....       ....++.+.|+ ++||++.+
T Consensus       297 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~  356 (399)
T 1c7n_A          297 KVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDE  356 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeC
Confidence            3334444444443333 4334445565554 467774210       01356888897 68999874

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.96  E-value=1.1e-28  Score=251.56  Aligned_cols=321  Identities=12%  Similarity=0.041  Sum_probs=213.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCc-eEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLK-VVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~-~v~~~~sGseA~  171 (447)
                      .+|||.+|..  .+| .+|.|.+|+.++++...+....|... ...+++++|++++    +  .+.+ +|+|++||++|+
T Consensus        38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  114 (429)
T 1yiz_A           38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL  114 (429)
T ss_dssp             CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence            5899988876  567 78999999999987632211223221 2344555555443    3  3456 899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC------cCCCCCCChHHHHHHHHH
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP------YRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~------~~~~~~~d~~~~~~~le~  245 (447)
                      +.+++.+.  .++++|++.+++||+....+... +.          .+..++....      ....|+.|    .++|++
T Consensus       115 ~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~-g~----------~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~  177 (429)
T 1yiz_A          115 YATIQGHV--DEGDEVIIIEPFFDCYEPMVKAA-GG----------IPRFIPLKPNKTGGTISSADWVLD----NNELEA  177 (429)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECBCCCSSSSEEGGGCBCC----HHHHHH
T ss_pred             HHHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEEeCCcccccccccccCcccC----HHHHHH
Confidence            99999764  24578999999999976654322 11          1122221110      00023344    567777


Q ss_pred             HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc----ccCCCCCEEE
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE----AHGVVPDIVT  321 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~----~~gv~pDivt  321 (447)
                      .+.    +++++|++++.++++|.+. |++++++|.++|++||+++|+||+|++|+++|.....+.    .++..+++.+
T Consensus       178 ~l~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s  252 (429)
T 1yiz_A          178 LFN----EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS  252 (429)
T ss_dssp             HCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEE
T ss_pred             Hhc----cCceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEec
Confidence            663    3678888888889999775 678999999999999999999999999988773222222    3445566778


Q ss_pred             eecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235          322 MAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-----IQKDKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       322 ~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~-----i~~~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      ++|.++ +|+|+|++++++++++.+....+..+|+.|+++++++.++|+.     .+.+++.+++++..+..++.|.+..
T Consensus       253 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  332 (429)
T 1yiz_A          253 AGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFL  332 (429)
T ss_dssp             HHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 7999999999999998887555567899999999999999987     4224444444444444444444333


Q ss_pred             HhcCCeeeEeecceeEEEEEeeCCCCC----CCCHHHHHHHHHHHH-hCCceeec
Q 013235          396 DKYGIIGDVRGRGFLLGVEFVTDRQLK----TPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       396 ~~~~~i~~vrg~Gl~~giel~~~~~~~----~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +++++....+..|+++++++.......    .+......++++.|+ ++||++.+
T Consensus       333 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~  387 (429)
T 1yiz_A          333 AEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIP  387 (429)
T ss_dssp             HHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBC
T ss_pred             HhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeC
Confidence            333433223345889999885321000    000012456888886 78999864

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.96  E-value=9.4e-29  Score=246.74  Aligned_cols=302  Identities=14%  Similarity=0.090  Sum_probs=208.2

Q ss_pred             EecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235           94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~  173 (447)
                      ++.+|+++|||.+|..  ++| .+|++.+|+.++++..    ..|+.+...+++++|+++++.+.++|+|++||++|++.
T Consensus        19 ~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~   91 (364)
T 1lc5_A           19 LGISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCI----ERYPDADYFHLHQALARHHQVPASWILAGNGETESIFT   91 (364)
T ss_dssp             HTSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred             cCCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence            3567889999998874  577 7899999999988653    23444556789999999987666789999999999999


Q ss_pred             HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      +++.+   ++ ++|++.+++||+....+...+.           .+..++..  ....+..        ++++++...+ 
T Consensus        92 ~~~~~---~g-d~vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~--------l~~~~~~~~~-  145 (364)
T 1lc5_A           92 VASGL---KP-RRAMIVTPGFAEYGRALAQSGC-----------EIRRWSLR--EADGWQL--------TDAILEALTP-  145 (364)
T ss_dssp             HHHHH---CC-SEEEEEESCCTHHHHHHHHTTC-----------EEEEEECC--GGGTTCC--------CTTHHHHCCT-
T ss_pred             HHHHc---CC-CeEEEeCCCcHHHHHHHHHcCC-----------eEEEEeCC--cccccch--------hHHHHHhccC-
Confidence            99977   34 8899999999997765543321           12222221  1001110        1122222222 


Q ss_pred             CeE-EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEEEeecccc-CCc
Q 013235          254 HVA-GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGI  330 (447)
Q Consensus       254 ~~a-avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~  330 (447)
                      +++ .++.+| ++++|.+. +.+++++|.++|++||+++|+||+|++|++.|..+... +.++....+.+++|.++ +|+
T Consensus       146 ~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  223 (364)
T 1lc5_A          146 DLDCLFLCTP-NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL  223 (364)
T ss_dssp             TCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT
T ss_pred             CCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCcc
Confidence            334 445567 66677664 77899999999999999999999999987655222221 22333334557999998 799


Q ss_pred             cccccc-cCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecce
Q 013235          331 PLGAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (447)
Q Consensus       331 pigav~-~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl  409 (447)
                      |+|+++ +++++++.+...  ..+|+.|+++++++.++|+.   .+..++.++..+..++.|.+..++++.+..+++.|.
T Consensus       224 r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~  298 (364)
T 1lc5_A          224 RLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN  298 (364)
T ss_dssp             CCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS
T ss_pred             ceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe
Confidence            999999 999998877642  25788999999998888863   234444444444444455444444544555577889


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++++.++          ..++.+.|+++||++.+
T Consensus       299 ~~~~~~~~~----------~~~l~~~l~~~gi~v~~  324 (364)
T 1lc5_A          299 YLLLRCERE----------DIDLQRRLLTQRILIRS  324 (364)
T ss_dssp             EEEEEESCT----------TCCHHHHHHTTTEECEE
T ss_pred             EEEEECCCc----------HHHHHHHHHHCCcEEee
Confidence            988887421          23578889999999875

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.93  E-value=3.7e-31  Score=267.03  Aligned_cols=324  Identities=12%  Similarity=0.053  Sum_probs=220.1

Q ss_pred             eEEEeecccEEEecCCC--eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC----C-
Q 013235           83 LNVVDGKMQYLFDENGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P-  155 (447)
Q Consensus        83 ~~~~~g~G~~l~d~dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~----~-  155 (447)
                      ++..+|+|+++||.+|+  .+|||..|..  .++ .+|++.+|+.++++...   ..|... ..++.+.|++++    + 
T Consensus        13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~-~~~l~~~la~~l~~~~g~   85 (392)
T 3b1d_A           13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLV---YGYTYA-SDELLQAVLDWEKSEHQY   85 (392)
Confidence            45677999999999999  9999988765  556 68999999999886531   223333 555666666543    2 


Q ss_pred             -CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cCCCCC
Q 013235          156 -GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFG  233 (447)
Q Consensus       156 -~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~~~~~  233 (447)
                       .+.++|++++||++|++.+++.+.  .++++|++..++||+....+...+             ...+..|.. ..+.|.
T Consensus        86 ~~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~g~~~  150 (392)
T 3b1d_A           86 SFDKEDIVFVEGVVPAISIAIQAFT--KEGEAVLINSPVYPPFARSVRLNN-------------RKLVSNSLKEENGLFQ  150 (392)
Confidence             345789999999999999998764  256789999999999876543321             111111110 001122


Q ss_pred             CChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC---Ccccc
Q 013235          234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGF  310 (447)
Q Consensus       234 ~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~---~~~~~  310 (447)
                      .|    .+++++.+..   .++++++++..++++|.+. +++++++|.++|++||+++|+||+|++|+++|.   .++++
T Consensus       151 ~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  222 (392)
T 3b1d_A          151 ID----FEQLENDIVE---NDVKLYLLCNPHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTV  222 (392)
Confidence            23    4566666642   2456777776778888764 678999999999999999999999999988763   23333


Q ss_pred             cc--cCCCCCEEEeecccc-CCccccccccCH-HHHHhhcCCcccccC-CCChHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013235          311 EA--HGVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (447)
Q Consensus       311 ~~--~gv~pDivt~sK~lg-~G~pigav~~~~-~i~~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l~~~~~~~g~  385 (447)
                      ..  .+..+++.++||.++ +|+|+|++++++ ++++.+.......++ +.|+++++++.++|+..  +++.+++++..+
T Consensus       223 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~  300 (392)
T 3b1d_A          223 SPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLE  300 (392)
Confidence            22  455677889999998 899999999875 588877765444444 46899999999998732  334444444444


Q ss_pred             HHHHHHHHHHHh-cCCeeeEeecceeEE-EEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          386 YLKERLTALKDK-YGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       386 ~l~~~L~~l~~~-~~~i~~vrg~Gl~~g-iel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ..++.|.+..++ ++.+..+++.|.|+. +++....       ....++.+.|+ ++||++.+
T Consensus       301 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~l~~~~gi~v~~  356 (392)
T 3b1d_A          301 ENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYG-------LTDDALFTLLHDQAKVILNR  356 (392)
Confidence            444545444433 334445666666654 7774210       12346888886 78999864

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.96  E-value=4.1e-28  Score=245.41  Aligned_cols=314  Identities=13%  Similarity=0.048  Sum_probs=215.2

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCceEEEcCCHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE  169 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~v~~~~sGse  169 (447)
                      .|+.+|||.+|... ..||++|.+.+|+.++++...+... |.. ....++.++|++++    +  ...++|++++||++
T Consensus        32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~  109 (407)
T 2zc0_A           32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG  109 (407)
T ss_dssp             SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred             CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence            37789999988864 3488999999999999987532222 332 23455666666554    4  34678999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |++.+++.+..  ++++|++.+++||+........ +.          .+..++..  ..   +.|    .++|++.+..
T Consensus       110 a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~----------~~~~v~~~--~~---~~d----~~~l~~~l~~  167 (407)
T 2zc0_A          110 ALDLLGRVLID--PGDVVITENPSYINTLLAFEQL-GA----------KIEGVPVD--ND---GMR----VDLLEEKIKE  167 (407)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTT-TC----------EEEEEEEE--TT---EEC----HHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHc-CC----------EEEEcccC--CC---CCC----HHHHHHHHHh
Confidence            99999997742  4678999999999865543221 11          12222211  11   123    5677777751


Q ss_pred             c--CCCCeEEEE-EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccC---CCCCEEEee
Q 013235          250 G--TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG---VVPDIVTMA  323 (447)
Q Consensus       250 ~--~~~~~aavi-~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~g---v~pDivt~s  323 (447)
                      .  ...++++|+ ++..++++|.+. |.+++++|.++|++||+++|+||+|++|.+.|.....+..++   ...++.+++
T Consensus       168 ~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  246 (407)
T 2zc0_A          168 LKAKGQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS  246 (407)
T ss_dssp             HHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred             hhcccCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence            1  112567764 555778888865 688999999999999999999999999987773233333333   233556799


Q ss_pred             ccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH--h---hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235          324 KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI--Q---KDKLQNNAHVVGSYLKERLTALKDKY  398 (447)
Q Consensus       324 K~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i--~---~~~l~~~~~~~g~~l~~~L~~l~~~~  398 (447)
                      |.+++|+|+|++++++++++.+.......+++.|+++++++.++|+..  +   -++..++.+++.+++.+.|++.....
T Consensus       247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  326 (407)
T 2zc0_A          247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA  326 (407)
T ss_dssp             TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999988876545567888999999999998754  1   12355566667777777766532112


Q ss_pred             CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       399 ~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      ..+  .+..|+++++++.+..        ...++.+.|+++ ||++.+
T Consensus       327 ~~~--~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~  364 (407)
T 2zc0_A          327 EFT--KPIAGMFVMFFLPEGA--------DGISFANELMEREGVVVVP  364 (407)
T ss_dssp             CBC--CCSBSSEEEEECSTTC--------CHHHHHHHHHHHTCEECBC
T ss_pred             EEe--cCCCcEEEEEEcCCCC--------CHHHHHHHHHHhCCeEEEC
Confidence            111  2456788888873210        145788899988 999864

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.96  E-value=1.4e-27  Score=236.83  Aligned_cols=307  Identities=14%  Similarity=0.048  Sum_probs=218.7

Q ss_pred             ecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCH
Q 013235           88 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSG  167 (447)
Q Consensus        88 g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sG  167 (447)
                      .+|.++++.+|+++|||.+|..  +++ .+|+|.+|+.++++..    ..|+++...+++++|+++++.+.+++++++||
T Consensus         5 ~~~~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~   77 (354)
T 3ly1_A            5 PESAAFTAPSTDNPIRINFNEN--PLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS   77 (354)
T ss_dssp             ----CCCCCCSSSCEECSSCCC--SSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred             cccccccCCCCCceEEccCCCC--CCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence            3567788999999999999875  555 7899999999988753    34667788899999999997667889999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|++.+++...  .+++.|++..++|++....+...             |...+..|...  .++.|    .++|++.+
T Consensus        78 ~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~--~~~~d----~~~l~~~l  136 (354)
T 3ly1_A           78 SEGIRAAIEAYA--SLEAQLVIPELTYGDGEHFAKIA-------------GMKVTKVKMLD--NWAFD----IEGLKAAV  136 (354)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECCCT--TSCCC----HHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCCeEEECCCCchHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHHHh
Confidence            999999998653  35678999999999876544332             22222222211  13345    67788877


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-c---ccc-CCCCCEEEe
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-F---EAH-GVVPDIVTM  322 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~---~~~-gv~pDivt~  322 (447)
                      .+.  .++.+|+++..++++|.+. +.+.+++|.++| +||+++|+||+|++|.+.|. ... .   +.+ +....+.++
T Consensus       137 ~~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~  211 (354)
T 3ly1_A          137 AAY--SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPR-FRSISPMITQGAENIILLKTF  211 (354)
T ss_dssp             HTC--SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT-CCCSHHHHHTTCSSEEEEEES
T ss_pred             ccC--CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccc-cCCHHHHhhhcCCCEEEEeeC
Confidence            631  2567777777788888776 555677777777 69999999999999987763 221 1   222 333445578


Q ss_pred             ecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       323 sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      +|.+| +|+++|++++++++++.+....  ..++.|+++++++.++|+..+ -++..++.+++.+++.+.|+++    + 
T Consensus       212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-  284 (354)
T 3ly1_A          212 SKIHAMAGMRVGYAVAHPTVIALMGRYV--AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K-  284 (354)
T ss_dssp             SSTTCCGGGCCEEEECCHHHHHHHGGGT--TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred             hhhccChhhhheeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence            99998 8999999999999999887543  337889999999999886321 1233445555555566555554    2 


Q ss_pred             eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       401 i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +..+++.|.++++++..          ...++.+.|+++||++.
T Consensus       285 ~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~  318 (354)
T 3ly1_A          285 LPYLPSEGNFVFHQLVV----------PLKDYQTHMADAGVLIG  318 (354)
T ss_dssp             CCBCCCCSSEEEEECSS----------CHHHHHHHHHHTTEECC
T ss_pred             CeECCCCceEEEEECCC----------CHHHHHHHHHHCCEEEe
Confidence            33346788998888742          14578889999999986

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.95  E-value=3.1e-28  Score=245.99  Aligned_cols=329  Identities=11%  Similarity=0.011  Sum_probs=214.8

Q ss_pred             EEEeecccEEEecCCC---eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHHhCCCC
Q 013235           84 NVVDGKMQYLFDENGR---RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPGN  157 (447)
Q Consensus        84 ~~~~g~G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~~~~~~~~elae~L~~~~~~~  157 (447)
                      ++..++|.++++.+++   ++|||.+|... +++ .+|+|.+|+.++++...   +....+..+...++++.|++.++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~   98 (407)
T 3nra_A           21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP   98 (407)
T ss_dssp             ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            3556677776555544   59999987653 455 78999999999987532   2222334567778888888876543


Q ss_pred             --C-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCC-CC-cCCCC
Q 013235          158 --L-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP-DP-YRGVF  232 (447)
Q Consensus       158 --~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p-~~-~~~~~  232 (447)
                        . ++++|++||++|++.+++..  ..+++.|++.+++|++....+.....           .+..++.. .. ....+
T Consensus        99 ~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~  165 (407)
T 3nra_A           99 VDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRKLVEFFEG-----------EMVPVQLDYVSADETRA  165 (407)
T ss_dssp             CCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHHHHHHTTC-----------EEEEEEBCCCSSCCSSC
T ss_pred             CCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHHHHHHcCC-----------EEEEeecccccccCcCC
Confidence              2 68999999999999999865  23568899999999976654433211           12222210 00 01223


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~  312 (447)
                      +.|    .++|++.+..    ++.+|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|+++|..+..+..
T Consensus       166 ~~d----~~~l~~~l~~----~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~  236 (407)
T 3nra_A          166 GLD----LTGLEEAFKA----GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA  236 (407)
T ss_dssp             CBC----HHHHHHHHHT----TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGG
T ss_pred             CcC----HHHHHHHHhh----CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhh
Confidence            334    6778777764    333444444477888765 7888999999999999999999999999888743333333


Q ss_pred             cC-----CCCCEEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013235          313 HG-----VVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY  386 (447)
Q Consensus       313 ~g-----v~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~  386 (447)
                      .+     ...++.+++|.++ +|+|+|++++++++++.+.......+++.++++++++.++|+.  .++..++..+..+.
T Consensus       237 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~  314 (407)
T 3nra_A          237 EAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQA  314 (407)
T ss_dssp             CTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHH
T ss_pred             cCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHH
Confidence            32     2334557899999 7999999999999999887655667788889988888777752  22333333333444


Q ss_pred             HHHHHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          387 LKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       387 l~~~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      +++.|.+..++++.+..++.. |+++++++....       ....++.+.|++ +||++.+
T Consensus       315 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~  368 (407)
T 3nra_A          315 IRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-------VAPAEFVKILRLQAGVVVTP  368 (407)
T ss_dssp             HHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-------SCHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-------CCHHHHHHHHHHhCCEEEeC
Confidence            444444444444434433444 578777764311       114568888876 5999864

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.95  E-value=1.5e-27  Score=240.11  Aligned_cols=307  Identities=14%  Similarity=0.086  Sum_probs=202.4

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCceEEEcCCHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLKVVFFTNSGT  168 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~~v~~~~sGs  168 (447)
                      .+|+++|||.+|...  ++ .+|+|.+|+.++++...   ..|... ...+++++|++++    +  .+.++|+|++||+
T Consensus        28 ~~g~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~  101 (391)
T 3h14_A           28 EAGRRIIHMEVGQPG--TG-APRGAVEALAKSLETDA---LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS  101 (391)
T ss_dssp             HTTCCCEECCCSSCS--SC-SCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred             hcCCCeEEccCCCCC--CC-CCHHHHHHHHHHHhcCC---CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChH
Confidence            478999999998864  45 37999999999886531   122222 1345555555543    2  4567899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|++.+++...  ..++.|++..++|++........             |...+..|....+.|..|    .+++++.  
T Consensus       102 ~al~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~--  160 (391)
T 3h14_A          102 GGFLLAFTALF--DSGDRVGIGAPGYPSYRQILRAL-------------GLVPVDLPTAPENRLQPV----PADFAGL--  160 (391)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEECCGGGTTSCC----HHHHTTS--
T ss_pred             HHHHHHHHHhc--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHhc--
Confidence            99999998664  25688999999999876544332             222222222212223334    4445432  


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-  327 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-  327 (447)
                           ++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|++|.++|......+..+....+.+++|.+| 
T Consensus       161 -----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  234 (391)
T 3h14_A          161 -----DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSM  234 (391)
T ss_dssp             -----CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC
T ss_pred             -----CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCC
Confidence                 445667767778888876 6777999999999999999999999999887732222232222223337899998 


Q ss_pred             CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~  407 (447)
                      +|+|+|++++++++++.+.......+++.|+++++++.++|+   .++..++.++..+..++.|.+..++++....+++.
T Consensus       235 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  311 (391)
T 3h14_A          235 TGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD  311 (391)
T ss_dssp             TTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC
T ss_pred             ccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence            899999999999999888765566788899999999988886   33344444444444444444444444544333444


Q ss_pred             -ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          408 -GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       408 -Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                       |+++++++....       ....++.+.|+++ ||++.+
T Consensus       312 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~  344 (391)
T 3h14_A          312 GAFYVYADVSDLT-------DDSRAFAAEILEKAGVAVTP  344 (391)
T ss_dssp             BTTEEEEECTTTC-------SCHHHHHHHHHHHHCEECEE
T ss_pred             eeEEEEEecCccC-------CCHHHHHHHHHHHCCEEEcC
Confidence             477777773211       0145688888876 999864

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.95  E-value=9.3e-28  Score=240.44  Aligned_cols=306  Identities=13%  Similarity=0.019  Sum_probs=207.9

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----CCC--Cc-eEEEcCCH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN--LK-VVFFTNSG  167 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~~~--~~-~v~~~~sG  167 (447)
                      .+|+++|||.+|..  .+| .+|.|.+|+.++++..  ....|.. ....+++++|++++    +.+  .+ +|+|++||
T Consensus        22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~   96 (376)
T 2dou_A           22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDP--TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS   96 (376)
T ss_dssp             HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCG--GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred             ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCC--CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            46889999999876  567 5899999999988652  1223444 35677888888765    433  24 79999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|++.+++...  .++++|++.+++||+....+...+.           .+..++.+    ..|..|    .+++++.+
T Consensus        97 ~~a~~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~----~~~~~d----~~~l~~~l  155 (376)
T 2dou_A           97 QEGLAHLLLALT--EPEDLLLLPEVAYPSYFGAARVASL-----------RTFLIPLR----EDGLAD----LKAVPEGV  155 (376)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHTTC-----------EEEEECBC----TTSSBC----GGGSCHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEECCCCcHhHHHHHHHcCC-----------EEEEeeCC----CCCCCC----HHHHHHhh
Confidence            999999998663  2457899999999997765543211           12222221    122234    34555555


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccc---cCCCCCEEEee
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEA---HGVVPDIVTMA  323 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~---~gv~pDivt~s  323 (447)
                      ..    ++++++++..++++|.+. +.+++++|.++|++||+++|+||+|++|.+.| .... .+.   .+...++.+++
T Consensus       156 ~~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~s  229 (376)
T 2dou_A          156 WR----EAKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLS  229 (376)
T ss_dssp             HH----HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHH
T ss_pred             cc----CceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecch
Confidence            42    567777765577788765 67899999999999999999999999998776 2221 222   23334455899


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      |.+| +|+|+|++++++++++.+.......+++.|+++++++.++|+..  ++..++.++..+..++.|.+..+++  +.
T Consensus       230 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~  305 (376)
T 2dou_A          230 KSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LS  305 (376)
T ss_dssp             HHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred             hhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence            9998 79999999999999988875445567788999999998888642  2333333333333344443333333  22


Q ss_pred             eEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          403 DVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       403 ~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+++ .|+++++++.+..        ...++.+.|+++||++.+
T Consensus       306 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~  341 (376)
T 2dou_A          306 LLPPRATMYLWGRLPEGV--------DDLEFGLRLVERGVALAP  341 (376)
T ss_dssp             ECCCCBSSEEEEECCTTC--------CHHHHHHHHHHTTEECEE
T ss_pred             ccCCCeeEEEEEECCCCC--------CHHHHHHHHHHCCEEEcC
Confidence            2333 4677888874210        135688999999999864

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.95  E-value=5.3e-27  Score=233.97  Aligned_cols=301  Identities=13%  Similarity=0.045  Sum_probs=217.6

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik  176 (447)
                      .+.+|||.+|..  +++ .+|+|.+|+.+++....  ...|+++...+++++|+++++. ..++++|++||++|++.+++
T Consensus        29 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~  103 (367)
T 3euc_A           29 SHGLVKLDAMEN--PYR-LPPALRSELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL  103 (367)
T ss_dssp             CTTCEECCSSCC--CCC-CCHHHHHHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred             CCCeeEccCCCC--CCC-CCHHHHHHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence            467999998874  455 78999999999987531  2345556678999999999865 55789999999999999998


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ...  ..+++|++.+++|++....+...+.           .+..++...    .+..|    .+++++.+...   +++
T Consensus       104 ~~~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~  159 (367)
T 3euc_A          104 AAA--RPGAKVMAPVPGFVMYAMSAQFAGL-----------EFVGVPLRA----DFTLD----RGAMLAAMAEH---QPA  159 (367)
T ss_dssp             HTC--CTTCEEEEEESCSCCSCHHHHTTTC-----------EEEEEECCT----TSCCC----HHHHHHHHHHH---CCS
T ss_pred             HHc--CCCCEEEEcCCCHHHHHHHHHHcCC-----------eEEEecCCC----CCCCC----HHHHHHHhhcc---CCC
Confidence            653  2567899999999988765543211           122232221    23345    56777777642   456


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA  334 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~piga  334 (447)
                      +|+++..++++|.+. +.+.+++|.++|++|  |+++|+||+|++|+..+ .....+.++..+++.+++|...+|+++|+
T Consensus       160 ~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~  237 (367)
T 3euc_A          160 IVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKLGLAGIRLGY  237 (367)
T ss_dssp             EEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCTTSCSCCEEE
T ss_pred             EEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhhcccccCcee
Confidence            777777788888876 667799999999999  99999999999987555 34444555555667789999446899999


Q ss_pred             cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                      +++++++++.+...  ..+|+.|+++++++.++|+.   .+..++..+..+.+++.|.+..++++.+..+++.|.+++++
T Consensus       238 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~  312 (367)
T 3euc_A          238 VAGDPQWLEQLDKV--RPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLAR  312 (367)
T ss_dssp             EEECHHHHHHHGGG--CCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEE
T ss_pred             eeeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEE
Confidence            99999999888643  35788999999999999875   22333333333444444444444454455567788898887


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.           ...++.+.|.++||++.+
T Consensus       313 ~~-----------~~~~l~~~l~~~gi~v~~  332 (367)
T 3euc_A          313 VP-----------DAAQTFDRLLARKVLIKN  332 (367)
T ss_dssp             CS-----------CHHHHHHHHHTTTEECEE
T ss_pred             CC-----------CHHHHHHHHHHCCeEEEE
Confidence            73           135688889999999874

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.95  E-value=5.8e-28  Score=243.26  Aligned_cols=324  Identities=12%  Similarity=0.069  Sum_probs=216.8

Q ss_pred             eEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCC---CC
Q 013235           83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG---NL  158 (447)
Q Consensus        83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~---~~  158 (447)
                      +....+.+.+++|.+|+++|||.+|..  .++ .+|.|.+|+.++++...+... .+..+...++++.|.+.++.   ..
T Consensus        14 ~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~   90 (396)
T 3jtx_A           14 FARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDA   90 (396)
T ss_dssp             HHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCT
T ss_pred             HHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Confidence            333456677778999999999999885  445 689999999998865432221 22345566677777666542   35


Q ss_pred             c-eEEEcCCHHHHHHHHHHHHHhhcC---CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCC
Q 013235          159 K-VVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGA  234 (447)
Q Consensus       159 ~-~v~~~~sGseA~e~Aik~ar~~t~---~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~  234 (447)
                      + +|++++||++|++.+++......+   ++.|++..++||+....+...+.           .+..++.+   ...|..
T Consensus        91 ~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~g~~~  156 (396)
T 3jtx_A           91 DNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGG-----------EIHFANCP---APSFNP  156 (396)
T ss_dssp             TTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECC---TTTCCC
T ss_pred             CCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEeecC---CCCCcc
Confidence            6 899999999999999997754211   26899999999987765543321           12222221   112222


Q ss_pred             ChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-c--
Q 013235          235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-E--  311 (447)
Q Consensus       235 d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~--  311 (447)
                      |    .++|++.+..    ++.+++++..++++|.+. +.+.+++|.++|++||+++|+||+|++|.++|...++. +  
T Consensus       157 d----~~~l~~~~~~----~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  227 (396)
T 3jtx_A          157 D----WRSISEEVWK----RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAA  227 (396)
T ss_dssp             C----GGGSCHHHHH----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHH
T ss_pred             C----HHHHHHhhcc----CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhh
Confidence            4    3455555543    456666655577888766 56679999999999999999999999998877323322 1  


Q ss_pred             -----ccCCCCCEEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013235          312 -----AHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (447)
Q Consensus       312 -----~~gv~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~  385 (447)
                           .++..+++.++||.++ +|+|+|++++++++++.+.......+++.|+++++++.++|+.   ++..++.++..+
T Consensus       228 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~  304 (396)
T 3jtx_A          228 AQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ  304 (396)
T ss_dssp             HHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred             hhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence                 1455566778999987 6899999999999999887655667888999999999998863   333333333333


Q ss_pred             HHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          386 YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ..++.+.+..+++-.+ .....|+++++++...         ...++.+.|+ ++||++.+
T Consensus       305 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~  355 (396)
T 3jtx_A          305 EKFERVIPILQQVFDV-KLPDASFYIWLKVPDG---------DDLAFARNLWQKAAIQVLP  355 (396)
T ss_dssp             HHHHHHHHHHTTTSCC-CCCSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHHHHHhcCCc-cCCCeeEEEEEECCCC---------CHHHHHHHHHHHCCEEEeC
Confidence            3333333333332111 1234478888887321         1356778885 46999864

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.95  E-value=5.4e-28  Score=244.04  Aligned_cols=310  Identities=11%  Similarity=0.045  Sum_probs=211.1

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      ++++|||.+|.... .||++|.+.+++.++++...+....|.. ....+++++|+++++.+.++|++++||++|++.+++
T Consensus        31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~  109 (397)
T 2zyj_A           31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK  109 (397)
T ss_dssp             STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence            45789999888643 5889999999999998764221223433 346788888888876556789999999999999998


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ...  .++++|++.+++||+....+...+.           .+..++..  ..   +.|    .++|++.+...   +++
T Consensus       110 ~~~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~--~~---~~d----~~~l~~~l~~~---~~~  164 (397)
T 2zyj_A          110 VFL--DEGSPVLLEAPSYMGAIQAFRLQGP-----------RFLTVPAG--EE---GPD----LDALEEVLKRE---RPR  164 (397)
T ss_dssp             HHC--CTTCEEEEEESCCHHHHHHHHTTCC-----------EEEEEEEE--TT---EEC----HHHHHHHHHHC---CCS
T ss_pred             HhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEecCcC--CC---CCC----HHHHHHHHhhc---CCe
Confidence            763  2457899999999987765443211           12222211  01   123    56787777642   345


Q ss_pred             EE-EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCC------CCEEEeeccccCC
Q 013235          257 GF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV------PDIVTMAKGIGNG  329 (447)
Q Consensus       257 av-i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~------pDivt~sK~lg~G  329 (447)
                      +| ++...++++|.+. +.+++++|.++|++||+++|+||+|++|+++|.....+..++..      ..+.+++|.+++|
T Consensus       165 ~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G  243 (397)
T 2zyj_A          165 FLYLIPSFQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG  243 (397)
T ss_dssp             CEEECCBSCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred             EEEECCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence            65 4455677788765 67899999999999999999999999998877322333333222      3345789999989


Q ss_pred             ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcC-Ceee-E
Q 013235          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYG-IIGD-V  404 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~-v  404 (447)
                      +|+|++++++++++.+....+..+++.|+++++++.++|+....   +++.+++++..+++.+.|++.   ++ .+.. .
T Consensus       244 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~  320 (397)
T 2zyj_A          244 LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTR  320 (397)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECC
T ss_pred             ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEcc
Confidence            99999999999998887544556788899999998888863211   122233334444444444332   23 1322 2


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.|+++++++.+..        ...++.+.|+++||++.+
T Consensus       321 ~~~g~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~  353 (397)
T 2zyj_A          321 PKGGMFVWMELPKGL--------SAEGLFRRALEENVAFVP  353 (397)
T ss_dssp             CSBSSEEEEECSTTC--------CHHHHHHHHHHTTEEEEE
T ss_pred             CCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEec
Confidence            456889988874210        135788999999999864

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.9e-27  Score=243.03  Aligned_cols=315  Identities=13%  Similarity=0.092  Sum_probs=213.4

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHh----CC--CCCceEEEcCCHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLKVVFFTNSGTE  169 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~----~~--~~~~~v~~~~sGse  169 (447)
                      .|+.+|||..|..  .++ .+|.|.+|+.++++...  ...|.. ....+|.+.|+++    ++  .+.++|++++||++
T Consensus        55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~  129 (447)
T 3b46_A           55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPM--VNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE  129 (447)
T ss_dssp             TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGG--GGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHH
T ss_pred             cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcC--CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHH
Confidence            4568999998876  455 78999999999987521  112322 1233444444444    33  23467999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC-CCC-------cCCCCCCChHHHHH
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN-PDP-------YRGVFGADGEMYAK  241 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~-p~~-------~~~~~~~d~~~~~~  241 (447)
                      |++.+++.+.  .++++|++.+++||+....+...+.           .+..++. +..       ....|..|    .+
T Consensus       130 al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~~~~~~~~~d----~~  192 (447)
T 3b46_A          130 GILSCLMGLL--NAGDEVIVFEPFFDQYIPNIELCGG-----------KVVYVPINPPKELDQRNTRGEEWTID----FE  192 (447)
T ss_dssp             HHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEEEECCGGGGTSCBCSTTSEEC----HH
T ss_pred             HHHHHHHHHc--CCCCEEEEeCCCchhHHHHHHHcCC-----------EEEEEeCCCccccccccccccCcccC----HH
Confidence            9999999763  3568899999999987665433221           1111221 100       00123334    56


Q ss_pred             HHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Ccccc--cccCCCC
Q 013235          242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGF--EAHGVVP  317 (447)
Q Consensus       242 ~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~--~~~gv~p  317 (447)
                      +|++.+.    .++++|+++..++++|.+. +++++++|.++|++||+++|+||+|++|.++|.  .+..+  +.++..+
T Consensus       193 ~l~~~l~----~~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i  267 (447)
T 3b46_A          193 QFEKAIT----SKTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTL  267 (447)
T ss_dssp             HHHTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEE
T ss_pred             HHHHhhc----cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEE
Confidence            6666553    3678888888888888775 688999999999999999999999999987762  12222  1346667


Q ss_pred             CEEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHH
Q 013235          318 DIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERL  391 (447)
Q Consensus       318 Divt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~----l~~~~~~~g~~l~~~L  391 (447)
                      ++.+++|.++ +|+|+|++++ ++++++.+....+..+|+.++++++++.++|+....++    +.++++++.+++.+.|
T Consensus       268 ~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L  347 (447)
T 3b46_A          268 TVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIF  347 (447)
T ss_dssp             EEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            7778999999 7999999999 99999888754456788999999999999998764344    4455556666666666


Q ss_pred             HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC----------HHHHHHHHHHHH-hCCceeec
Q 013235          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----------KAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~----------~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +++    ++....+..|+++++++...   ..|.          .....++++.|+ ++||++.+
T Consensus       348 ~~~----g~~~~~~~~g~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p  405 (447)
T 3b46_A          348 DEL----GLPYTAPEGTYFVLVDFSKV---KIPEDYPYPEEILNKGKDFRISHWLINELGVVAIP  405 (447)
T ss_dssp             HHH----TCCEECCSBSSEEEEECTTC---CCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBC
T ss_pred             HHC----CCeecCCCeeEEEEEecccc---cCccccccccccccCCCHHHHHHHHHHhCCEEEEC
Confidence            554    32222355688898888421   1111          012456888887 58999864

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.95  E-value=2.3e-27  Score=244.06  Aligned_cols=313  Identities=11%  Similarity=0.068  Sum_probs=211.4

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----CC-CCceEEEcCCHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG-NLKVVFFTNSGTEAN  171 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~~-~~~~v~~~~sGseA~  171 (447)
                      +..+|||.+|..... +|.++++.+|+.++++........|. .....+|++.|++++    +. +.++|++++||++|+
T Consensus        75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al  153 (448)
T 3aow_A           75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL  153 (448)
T ss_dssp             TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred             CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence            456899999887543 57889999999999876421112232 223455666666655    54 567899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc-
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-  250 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-  250 (447)
                      +.+++...  .+++.|++.+++||+....+...             |...+..|...   .+.|    .++|++.+... 
T Consensus       154 ~~~~~~l~--~~Gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~---~g~d----~~~L~~~l~~~~  211 (448)
T 3aow_A          154 DLIGRVFL--NPGDIVVVEAPTYLAALQAFNFY-------------EPQYIQIPLDD---EGMK----VEILEEKLKELK  211 (448)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCHHHHHHHHTT-------------CCEEEEEEEET---TEEC----HHHHHHHHHHHH
T ss_pred             HHHHHHHc--CCCCEEEEeCCChHHHHHHHHHc-------------CCEEEEeccCC---CCCC----HHHHHHHHhhhh
Confidence            99999763  25688999999999876654332             12222221111   1123    56777777510 


Q ss_pred             -CCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---cccccccCCCCCEEEeecc
Q 013235          251 -TSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKG  325 (447)
Q Consensus       251 -~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~~gv~pDivt~sK~  325 (447)
                       ...++++|++.| .++++|.+ .+.+++++|.++|++||+++|+||+|++|.+.|..   ++.++..+..+++.+|||.
T Consensus       212 ~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~  290 (448)
T 3aow_A          212 SQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI  290 (448)
T ss_dssp             HTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred             ccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence             112677876665 56778876 47889999999999999999999999998776632   2333334455677789999


Q ss_pred             ccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHhcC-C
Q 013235          326 IGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL----QNNAHVVGSYLKERLTALKDKYG-I  400 (447)
Q Consensus       326 lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l----~~~~~~~g~~l~~~L~~l~~~~~-~  400 (447)
                      +++|+|+|++++++++++.+.......+++.|+++++++.++|+...-++.    .+..+++.+++.+.|++.   ++ .
T Consensus       291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g  367 (448)
T 3aow_A          291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEG  367 (448)
T ss_dssp             TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTT
T ss_pred             ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence            999999999999999998887544556788899999999888864211222    233334444444444432   23 2


Q ss_pred             eeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          401 IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       401 i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +..+ +..|+++++++.+.        ....++++.|+++||++.+
T Consensus       368 ~~~~~p~~g~~~~v~~~~~--------~~~~~l~~~l~~~gV~v~p  405 (448)
T 3aow_A          368 VKWTKPEGGMFIWVTLPDG--------IDSKKMLERAIKKGVAYVP  405 (448)
T ss_dssp             CEECCCSBSSEEEEECSTT--------CCHHHHHHHHHHTTEECEE
T ss_pred             eEEeCCCccEEEEEEcCCC--------CCHHHHHHHHHHCCcEEEc
Confidence            3333 34588899888321        0135788999999999865

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.95  E-value=1.2e-26  Score=231.14  Aligned_cols=297  Identities=12%  Similarity=0.026  Sum_probs=207.2

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      ++.+|||.+|..  +++ .+|+|.+|+.++++..    ..|+++...+++++|+++++.+.++++|++||++|++.+++.
T Consensus        31 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~  103 (363)
T 3ffh_A           31 LTKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV  103 (363)
T ss_dssp             CSCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence            357999998866  556 7899999998876543    345666778999999999876678899999999999999986


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      ..  .++++|++.+++|++....+...+.           .+..++...    .+..|    .+++++.+.    +++++
T Consensus       104 ~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~----~~~~~  158 (363)
T 3ffh_A          104 LL--DTTTNTVMATPTFVQYRQNALIEGA-----------EVREIPLLQ----DGEHD----LEGMLNAID----EKTTI  158 (363)
T ss_dssp             HC--STTCEEEEEESSCHHHHHHHHHHTC-----------EEEEEECCT----TSCCC----HHHHHHHCC----TTEEE
T ss_pred             Hc--cCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCCC----CCCcC----HHHHHHhcc----cCCCE
Confidence            53  3568999999999986655443211           122333221    12234    566776663    25778


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC----EEEeecccc-CCccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAKGIG-NGIPL  332 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD----ivt~sK~lg-~G~pi  332 (447)
                      |+++..++++|.+.+ .+.+++|.+.|++ |+++|+||+|++|++ | +.+........+|    +.+++|.+| +|+|+
T Consensus       159 v~~~~p~nptG~~~~-~~~l~~l~~~~~~-~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~  234 (363)
T 3ffh_A          159 VWICNPNNPTGNYIE-LADIQAFLDRVPS-DVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASARV  234 (363)
T ss_dssp             EEEESSCTTTCCCCC-HHHHHHHHTTSCT-TSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC
T ss_pred             EEEeCCCCCcCCCcC-HHHHHHHHHhCCC-CcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchhce
Confidence            888877888898774 4445555555555 999999999999987 6 3443332222344    457899998 79999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g  412 (447)
                      |++++++++++.+....  .+|+.|+++++++.++|+.   .+..++.++..+..++.|.+..+++..+..+++.|.+++
T Consensus       235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~  309 (363)
T 3ffh_A          235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL  309 (363)
T ss_dssp             EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEE
T ss_pred             eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEE
Confidence            99999999998887543  4788999999999999962   234444444444444455444444333445677889988


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++..          ...++.+.|+++||++.+
T Consensus       310 ~~~~~----------~~~~~~~~l~~~gi~v~~  332 (363)
T 3ffh_A          310 IDLGI----------EAGTIFSYLEKNGYITRS  332 (363)
T ss_dssp             EECSS----------CHHHHHHHHHHTTEECEE
T ss_pred             EECCC----------CHHHHHHHHHHCCeEEEe
Confidence            88732          146788999999999875

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.95  E-value=9.8e-27  Score=237.62  Aligned_cols=317  Identities=15%  Similarity=0.096  Sum_probs=215.5

Q ss_pred             ecCCCeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC-----CCCceEEEcCCH
Q 013235           95 DENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-----GNLKVVFFTNSG  167 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~-----~~~~~v~~~~sG  167 (447)
                      +.+|+.+|||..|.... +-.+.+|.|.+|+.++++...  ...| +.....+++++|++++.     ...++|++++||
T Consensus        50 ~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~  127 (427)
T 3dyd_A           50 PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK--YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC  127 (427)
T ss_dssp             CCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC--SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred             ccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc--CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence            45688999999887532 123478999999999988742  1233 34456788888888876     456789999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|++.+++.+..  +++.|++.+++|++....+...+             .....+|......|+.|    ++++++.+
T Consensus       128 t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~l  188 (427)
T 3dyd_A          128 SQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMG-------------IEVKLYNLLPEKSWEID----LKQLEYLI  188 (427)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEEEGGGTTEEC----HHHHHSSC
T ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHHh
Confidence            9999999997643  66889999999998765544332             22222221111122223    45666555


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeec
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAK  324 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK  324 (447)
                      .   + ++.++++...++++|.+. +++.+++|.++|+++|+++|+||+|++|+++|..+..+..++..++++   +++|
T Consensus       189 ~---~-~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK  263 (427)
T 3dyd_A          189 D---E-KTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAK  263 (427)
T ss_dssp             C---T-TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTT
T ss_pred             c---c-CCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccc
Confidence            3   2 345555555578888765 788899999999999999999999999998884444556666667777   7999


Q ss_pred             ccc-CCccccccccC-------HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHH
Q 013235          325 GIG-NGIPLGAVVTT-------PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       325 ~lg-~G~pigav~~~-------~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~  393 (447)
                      .++ .|+|+|+++++       +++++.+... ...+++.|+++++++.++|+...++   +..++++++.+++.+.|++
T Consensus       264 ~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~  342 (427)
T 3dyd_A          264 RWLVPGWRLGWILIHDRRDIFGNEIRDGLVKL-SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA  342 (427)
T ss_dssp             TSSCGGGCCEEEEEECSTTSSHHHHHHHHHHH-HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCcceEEEEecCcchhhHHHHHHHHHHH-HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            976 68999999987       5677766532 2247889999999999999853322   2334444555555555544


Q ss_pred             HHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          394 LKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                          ++.+..+ +..|+++.+.+....   .|+.....++++.|+ ++||++.+
T Consensus       343 ----~~g~~~~~p~~g~~~~~~l~~~~---~~~~~~~~~~~~~l~~~~gV~v~~  389 (427)
T 3dyd_A          343 ----IPGLRPVRPSGAMYLMVGIEMEH---FPEFENDVEFTERLVAEQSVHCLP  389 (427)
T ss_dssp             ----STTEEEECCSBTTEEEEEECGGG---CTTCSSHHHHHHHHHHHHCEECEE
T ss_pred             ----CCCceecCCCeeEEEEEecCHhh---cCCCCCHHHHHHHHHHHCCEEEEC
Confidence                4445444 455778888874221   111112356778875 78999864

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=1.3e-27  Score=243.82  Aligned_cols=316  Identities=11%  Similarity=0.047  Sum_probs=211.2

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C---CCCceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P---GNLKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~---~~~~~v~~~~sGse  169 (447)
                      ++.+|||.+|.... .||++|.|.+|+.++++........|.. ....++.+.|++++    +   .+.++|++++||++
T Consensus        42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~  120 (425)
T 1vp4_A           42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ  120 (425)
T ss_dssp             STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred             CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence            56799999988643 5889999999999998763211122322 12344555555444    4   45678999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |++.+++...  .+++.|++.+++||+....+...+.           .+..++..  ..   +.|    .++|++.+..
T Consensus       121 al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~--~~---~~d----~~~l~~~l~~  178 (425)
T 1vp4_A          121 ALDLIGKLFL--DDESYCVLDDPAYLGAINAFRQYLA-----------NFVVVPLE--DD---GMD----LNVLERKLSE  178 (425)
T ss_dssp             HHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTTC-----------EEEEEEEE--TT---EEC----HHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEEeccC--CC---CCC----HHHHHHHHHh
Confidence            9999998653  2457899999999987765443211           11222211  11   123    5667766653


Q ss_pred             c----CCCCeEEEE-EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCC---CEEE
Q 013235          250 G----TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP---DIVT  321 (447)
Q Consensus       250 ~----~~~~~aavi-~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~p---Divt  321 (447)
                      .    ...++++|+ +...++++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.....+..++..+   .+.+
T Consensus       179 ~~~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s  257 (425)
T 1vp4_A          179 FDKNGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT  257 (425)
T ss_dssp             HHHTTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred             hhhcccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence            1    012567774 444667778765 678999999999999999999999999987773223333232222   3447


Q ss_pred             eeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHHHHHHHHh
Q 013235          322 MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K--DKLQNNAHVVGSYLKERLTALKDK  397 (447)
Q Consensus       322 ~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~--~~l~~~~~~~g~~l~~~L~~l~~~  397 (447)
                      ++|.+++|+|+|++++++++++.+.......+++.|+++++++.++|+...  +  ++..++++++.+++.+.|++....
T Consensus       258 ~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  337 (425)
T 1vp4_A          258 FSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD  337 (425)
T ss_dssp             STTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             cccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            899999999999999999999888754455678889999999999997641  1  234455556666676666654221


Q ss_pred             cCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          398 YGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       398 ~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+..+ ++.|+++++++.+..        ...++.+.|+++||++.+
T Consensus       338 ~~g~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~  378 (425)
T 1vp4_A          338 IPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVP  378 (425)
T ss_dssp             STTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEE
T ss_pred             CCceEEecCCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEEC
Confidence            1123222 456889999884211        023578888888999864

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.95  E-value=4.9e-27  Score=240.14  Aligned_cols=322  Identities=15%  Similarity=0.085  Sum_probs=210.6

Q ss_pred             EecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc---------ccccc-hHHHHHHHHHHHhCC--------
Q 013235           94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---------VLYLN-HAIADFAEALASKMP--------  155 (447)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~---------~~~~~-~~~~elae~L~~~~~--------  155 (447)
                      ||.++|.+.++..|...++++  ++.+.+++.++.....+..         ..|.. ....+|+++|++++.        
T Consensus        31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~  108 (435)
T 3piu_A           31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT  108 (435)
T ss_dssp             CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred             CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence            788888887877787777666  6888888888766543320         12332 234567777776653        


Q ss_pred             CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCC
Q 013235          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (447)
Q Consensus       156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (447)
                      ...++|+|++||++|++.+++....  +++.|++.+++|++.........            |...+..|....+.|..|
T Consensus       109 ~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~d  174 (435)
T 3piu_A          109 FDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRT------------GVEIVPIHCTSSNGFQIT  174 (435)
T ss_dssp             CCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTT------------CCEEEEEECCGGGTSCCC
T ss_pred             CCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhc------------CCEEEEeeCCCccCCcCC
Confidence            3467899999999999999987643  56789999999987655433122            222222222222234345


Q ss_pred             hHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc
Q 013235          236 GEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH  313 (447)
Q Consensus       236 ~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~  313 (447)
                          .++|++.+...  ...++++|++++.++++|.+. +.+.+++|.++|++||+++|+||+|++++++|..+......
T Consensus       175 ----~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  249 (435)
T 3piu_A          175 ----ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEV  249 (435)
T ss_dssp             ----HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHH
T ss_pred             ----HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHh
Confidence                45666666531  123677888887788888765 67789999999999999999999999988877433332222


Q ss_pred             CCC---------CC----EEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--h---
Q 013235          314 GVV---------PD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K---  373 (447)
Q Consensus       314 gv~---------pD----ivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~---  373 (447)
                      +..         +|    +.+++|++| +|+|+|++++ ++++.+.+..  +..++..|+++++++.++|+..+  +   
T Consensus       250 ~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (435)
T 3piu_A          250 LKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKLTKNYI  327 (435)
T ss_dssp             HHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence            111         44    557999998 8999999999 5777776653  34566788999998888876332  1   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecc-eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       374 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G-l~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      ++..+++++..+++++.|++    .+ +..+++.| +++++++.....  .+......++++.|+++ ||++.+
T Consensus       328 ~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~  394 (435)
T 3piu_A          328 AENHKRLKQRQKKLVSGLQK----SG-ISCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYEVHLNISP  394 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT----TT-CEECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHHTSCEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cC-CcccCCCeeEEEEEEcccccc--cCCchhHHHHHHHHHHHCCEEEeC
Confidence            12233344444444444443    33 33344554 899999854221  12222356788889887 999875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.95  E-value=4e-27  Score=238.95  Aligned_cols=311  Identities=14%  Similarity=0.079  Sum_probs=204.5

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----C--CCC-ceEEEcCCH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNL-KVVFFTNSG  167 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~-~~v~~~~sG  167 (447)
                      .+|+++|||.+|..  ++| .+|.|.+|+.++++...  ...|. .....++++.|++++    +  .+. ++|++++||
T Consensus        34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~  108 (412)
T 2x5d_A           34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQRED--THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGS  108 (412)
T ss_dssp             HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCH
T ss_pred             hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCCh
Confidence            57889999998875  567 78999999999886541  11232 233455666666555    4  234 589999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|++.+++...  .+++.|++.+++||+....+...+.           .+..++...  .    ++..--++++++.+
T Consensus       109 ~~a~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~--~----~~~~~d~~~l~~~i  169 (412)
T 2x5d_A          109 KEGLAHLMLATL--DHGDTILVPNPSYPIHIYGAVIAGA-----------QVRSVPLVP--G----IDFFNELERAIRES  169 (412)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHHTC-----------EEEEEECST--T----SCHHHHHHHHHHTE
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcCC-----------EEEEeecCC--c----cCCCCCHHHHHHhc
Confidence            999999998753  2457899999999987765543211           122222110  0    01001145555554


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc----cCCCCCEEEee
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMA  323 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~----~gv~pDivt~s  323 (447)
                      .   + ++++|++...++++|.+. +.+++++|.++|++||+++|+||+|++|.++|.....+..    .+....+.+++
T Consensus       170 ~---~-~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~s  244 (412)
T 2x5d_A          170 I---P-KPRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLS  244 (412)
T ss_dssp             E---S-CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC
T ss_pred             c---c-CceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCc
Confidence            3   2 445555543466677764 6789999999999999999999999999877632222222    23334455799


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      |.++ +|+|+|++++++++++.+.......+++.|+++++++.++|+..++  +++.++++++.+++.+.|+++  ....
T Consensus       245 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  322 (412)
T 2x5d_A          245 KSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWMV  322 (412)
T ss_dssp             -CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCCC
T ss_pred             cccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCEe
Confidence            9998 8999999999999998887554556889999999999999875322  345566777777777777765  2222


Q ss_pred             eeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       401 i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                         +++. |+++++++.+.-    . .....++.+.|++ +||++.+
T Consensus       323 ---~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~l~~~~gi~v~~  361 (412)
T 2x5d_A          323 ---ENPKASMYVWAKIPEPY----A-HLGSLEFAKKLLQDAKVSVSP  361 (412)
T ss_dssp             ---CCCSBSSEEEEECCTTT----G-GGCHHHHHHHHHHHHCEECEE
T ss_pred             ---cCCCeeeEEEEEcCCcc----C-CCCHHHHHHHHHHHCCEEEeC
Confidence               3344 677888873210    0 0013568888875 6999874

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.95  E-value=7.5e-27  Score=233.48  Aligned_cols=302  Identities=11%  Similarity=-0.039  Sum_probs=204.5

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCC--CCceEEEcCCHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANE  172 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~--~~~~v~~~~sGseA~e  172 (447)
                      .+| .+|||.+|..  +++ .+|.|.+|+.+++....+... ....+...++++.+.+.++.  +.++|+|++||++|++
T Consensus        21 ~~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~   96 (376)
T 3ezs_A           21 PKK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF   96 (376)
T ss_dssp             CSS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred             ccC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence            467 8999999885  556 689999999988744322111 11234445555555554443  5688999999999999


Q ss_pred             HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (447)
Q Consensus       173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (447)
                      .+++.....++++.|++.+++||+....+...+.           .+..++..  ....+  +    . ++++.+..   
T Consensus        97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~--~----~-~l~~~~~~---  153 (376)
T 3ezs_A           97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKA-----------KSLLMPLT--KENDF--T----P-SLNEKELQ---  153 (376)
T ss_dssp             HHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTC-----------EEEEEECC--GGGTS--C----C-CCCHHHHH---
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCC-----------EEEEcccC--CCCCc--c----h-hHHhhhcc---
Confidence            9999775433368999999999987665443321           11222211  11111  1    0 23333432   


Q ss_pred             CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-c--------ccCCCCCEEEee
Q 013235          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-E--------AHGVVPDIVTMA  323 (447)
Q Consensus       253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~--------~~gv~pDivt~s  323 (447)
                       ++.++++...++++|.+. +.+.+++|.++|++||+++|+||+|++|.++| ..+.. +        .++..+++.+++
T Consensus       154 -~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~s  230 (376)
T 3ezs_A          154 -EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLS  230 (376)
T ss_dssp             -HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred             -CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecch
Confidence             334555544477788766 67789999999999999999999999998887 34433 2        345556677899


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      |.+| +|+|+|++++++++++.+....+..+++.|+++++++.++|+.   ++..++.++..+..++.|.+..+  +. .
T Consensus       231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~  304 (376)
T 3ezs_A          231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L  304 (376)
T ss_dssp             TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C
T ss_pred             hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C
Confidence            9997 7999999999999999887655667889999999999998873   33333344333334444433332  22 2


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                       .++.|+++++++.           ...++++.|++ +||++.+
T Consensus       305 -~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~  336 (376)
T 3ezs_A          305 -IYPYSFYVYLPVQ-----------NGENFAKTLYQNEGIITLP  336 (376)
T ss_dssp             -CCSBSSEEEEECS-----------CHHHHHHHHHHHHCCBCEE
T ss_pred             -CCCcceEEEEECC-----------CHHHHHHHHHHhCCEEEeC
Confidence             5677899988873           13568888887 8999864

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.94  E-value=1.3e-25  Score=224.59  Aligned_cols=295  Identities=15%  Similarity=0.093  Sum_probs=210.8

Q ss_pred             EEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh------CCCCCceEEEcCCHHHHHHHHH
Q 013235          102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK------MPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus       102 lD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~------~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      |||.+|..  ++| .+|++.+++.+++++.......|.++...+++++|+++      ++.+.++|++++|+++|++.++
T Consensus        33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~  109 (369)
T 3cq5_A           33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL  109 (369)
T ss_dssp             EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred             eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence            89998876  567 78999999999997742222344444335777777777      5555678999999999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      +...  .+++.|++.+++||+....+...+.           .+..++..    ..|+.|    .+++++.+...   ++
T Consensus       110 ~~l~--~~gd~Vl~~~~~y~~~~~~~~~~g~-----------~~~~v~~~----~~~~~d----~~~l~~~i~~~---~~  165 (369)
T 3cq5_A          110 QAFG--GPGRTALGFQPSYSMHPILAKGTHT-----------EFIAVSRG----ADFRID----MDVALEEIRAK---QP  165 (369)
T ss_dssp             HHHC--STTCEEEEEESSCTHHHHHHHHTTC-----------EEEEEECC----TTSSCC----HHHHHHHHHHH---CC
T ss_pred             HHhc--CCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCC----cCCCCC----HHHHHHHhhcc---CC
Confidence            8763  2558899999999987664433211           12223221    123345    56677776532   45


Q ss_pred             EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccC-CCCCEEEeecccc-CCccc
Q 013235          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG-VVPDIVTMAKGIG-NGIPL  332 (447)
Q Consensus       256 aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~g-v~pDivt~sK~lg-~G~pi  332 (447)
                      ++|++++.++++|.+.+    ++++.++|+.+++++|+||+|++|++.. ..+.. +.++ ..+++.+++|.++ +|+|+
T Consensus       166 ~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  240 (369)
T 3cq5_A          166 DIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSP-SATTLLEKYPTKLVVSRTMSKAFDFAGGRL  240 (369)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSC-CGGGGTTTCTTTEEEEEESSSTTSCGGGCC
T ss_pred             CEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCc-chHHHHhhCCCCEEEEEechHhcCCcccce
Confidence            67888888999998876    7888888888899999999999987643 33332 3344 4456668999998 79999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      |++++++++++.+....  .+|+.|+++++++.++|+..+ -++..++.+++.+++.+.|++.    + +..+++.|.++
T Consensus       241 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~  313 (369)
T 3cq5_A          241 GYFVANPAFIDAVMLVR--LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFV  313 (369)
T ss_dssp             EEEEECTHHHHHHHTTS--CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEE
T ss_pred             EEEEeCHHHHHHHHHcC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEE
Confidence            99999999988886532  467899999999999997432 1345566667777777777653    2 33356778888


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++..          ...++.+.|.++||++.+
T Consensus       314 ~~~~~~----------~~~~l~~~l~~~gi~v~~  337 (369)
T 3cq5_A          314 FFGDFS----------DQHAAWQAFLDRGVLIRD  337 (369)
T ss_dssp             EEECCS----------SHHHHHHHHHHTTEECBC
T ss_pred             EEECCC----------CHHHHHHHHHHCCEEEEE
Confidence            887631          135688889999999865

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.94  E-value=1.5e-26  Score=234.41  Aligned_cols=307  Identities=12%  Similarity=0.051  Sum_probs=206.0

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----CCC---CceEEEcCCH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN---LKVVFFTNSG  167 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~~~---~~~v~~~~sG  167 (447)
                      ..|+++|||.+|..  .+| .+|.|.+|+.++++...  ...|.. ....+++++|++++    +.+   .+.|++++||
T Consensus        44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~  118 (404)
T 2o1b_A           44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPE--NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGT  118 (404)
T ss_dssp             CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHH--HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSH
T ss_pred             cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCc
Confidence            35788999999887  567 68999999999885421  112332 23455666666554    533   2679999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|++.+++...  .+++.|++.+++||+....+...+.           .+..++...   ..|..|    .++|++.+
T Consensus       119 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~---~~~~~d----~~~l~~~l  178 (404)
T 2o1b_A          119 KNGLVAVPTCVI--NPGDYVLLPDPGYTDYLAGVLLADG-----------KPVPLNLEP---PHYLPD----WSKVDSQI  178 (404)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCSSHHHHHHHTTC-----------EEEEEECCT---TTCCCC----GGGSCHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccCc---ccCcCC----HHHHHHhh
Confidence            999999998763  2457899999999997765543211           122222211   122234    34555555


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccc-ccCCCCCEEEeec
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFE-AHGVVPDIVTMAK  324 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~-~~gv~pDivt~sK  324 (447)
                      ..    ++++|+++..++++|.+. |.+++++|.++|++||+++|+||+|++|.++|.  .++.+. ..+....+.+++|
T Consensus       179 ~~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK  253 (404)
T 2o1b_A          179 ID----KTKLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSK  253 (404)
T ss_dssp             HH----HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTT
T ss_pred             cc----CceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecch
Confidence            42    567777775577788765 788999999999999999999999999877662  122221 1233345668999


Q ss_pred             ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      .++ +|+|+|++++++++++.+.......+++.|+++++++.++|+..++  ++..++++++.+++.+.|+++    + +
T Consensus       254 ~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~  328 (404)
T 2o1b_A          254 GYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----D-L  328 (404)
T ss_dssp             TTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-C
T ss_pred             hccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----C-C
Confidence            998 7999999999999998887544556788999999999999875311  223444555555565555553    3 2


Q ss_pred             eeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          402 GDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       402 ~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .-+++ .|+++++++.+..        ...++.+.|+ ++||++.+
T Consensus       329 ~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~  366 (404)
T 2o1b_A          329 PFVHAKGGIYVWLETPPGY--------DSEQFEQFLVQEKSILVAP  366 (404)
T ss_dssp             CEECCCBSSEEEEECCTTC--------CHHHHHHHHHHHHCEECEE
T ss_pred             eecCCCcceEEEEeCCCCC--------CHHHHHHHHHHHCCEEEeC
Confidence            22344 3667888874210        1356888887 57999874

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.94  E-value=3.9e-26  Score=229.45  Aligned_cols=305  Identities=13%  Similarity=0.115  Sum_probs=204.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHh----CC--CCCc-eEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLK-VVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~----~~--~~~~-~v~~~~sGseA~  171 (447)
                      .+|||.+|..  .++ .+|.+.+|+.++++...   ..|.. ....+++++|+++    ++  .+.+ +|++++||++|+
T Consensus        31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  104 (386)
T 1u08_A           31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGA---NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL  104 (386)
T ss_dssp             TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred             CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhc---cCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHH
Confidence            4789988776  466 78999999999987621   12222 1234455555554    33  3456 899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      +.+++...  .++++|++.+++||+....+... +.          .+..++...  . .|+.|    .++|++.+.   
T Consensus       105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-g~----------~~~~v~~~~--~-~~~~d----~~~l~~~l~---  161 (386)
T 1u08_A          105 YAAITALV--RNGDEVICFDPSYDSYAPAIALS-GG----------IVKRMALQP--P-HFRVD----WQEFAALLS---  161 (386)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECCT--T-TCCCC----HHHHHHHCC---
T ss_pred             HHHHHHhC--CCCCEEEEeCCCchhHHHHHHHc-CC----------EEEEeecCc--c-cCcCC----HHHHHHhhc---
Confidence            99998763  35678999999999866543222 11          122222211  0 23345    567777663   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---ccccc-ccCCCCCEEEeecccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFE-AHGVVPDIVTMAKGIG  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~-~~gv~pDivt~sK~lg  327 (447)
                       +++++|+++..++++|.+. |.+++++|.++|++||+++|+||+|++|.+.|..   ++.++ .++..+.+.+++|.++
T Consensus       162 -~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~  239 (386)
T 1u08_A          162 -ERTRLVILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH  239 (386)
T ss_dssp             -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT
T ss_pred             -ccCEEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC
Confidence             3677888887788888775 6789999999999999999999999998776631   22222 2455556678999999


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                       +|+|+|++++++++++.+....+..+|+.|+++++++.++|+..++  +++.++++++.+++.+.|++    +++....
T Consensus       240 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~  315 (386)
T 1u08_A          240 MTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE----SRLEILP  315 (386)
T ss_dssp             CGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS----SSCEECC
T ss_pred             CcccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH----CCCeecC
Confidence             7999999999999998887544556888999999999888875421  23344445555555554443    3322112


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ...|+++++++....  .    ....++.+.|+ ++||++.+
T Consensus       316 ~~~g~~~~~~~~~~~--~----~~~~~~~~~l~~~~gi~v~~  351 (386)
T 1u08_A          316 CEGTYFLLVDYSAVS--T----LDDVEFCQWLTQEHGVAAIP  351 (386)
T ss_dssp             CCBSSEEEEECTTTC--C----SCHHHHHHHHHHHSCEECEE
T ss_pred             CCceEEEEEecCCCC--C----CCHHHHHHHHHHhCCEEEeC
Confidence            234788888873210  0    01356778776 68999864

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.94  E-value=1.4e-26  Score=232.23  Aligned_cols=297  Identities=15%  Similarity=0.140  Sum_probs=211.5

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      +|||.+|..  .++ .+|.+.+++.++++..    ..|... ...+++++|+++++.+.+++++++||++|++.+++.+.
T Consensus        27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~   99 (381)
T 1v2d_A           27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV   99 (381)
T ss_dssp             CEECCCCSC--SSC-CCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             eEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence            789988876  456 7899999999988762    234433 46789999999987666789999999999999998763


Q ss_pred             hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                        .++++|++.+++||+....+... +.          .+..++.+. +...+..|    .++|++.+.    .++++|+
T Consensus       100 --~~gd~Vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~-~~~~~~~d----~~~l~~~l~----~~~~~v~  157 (381)
T 1v2d_A          100 --GPGDEVVVLEPFFDVYLPDAFLA-GA----------KARLVRLDL-TPEGFRLD----LSALEKALT----PRTRALL  157 (381)
T ss_dssp             --CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECEE-ETTEEECC----HHHHHTTCC----TTEEEEE
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEEeCCC-CCccCCcC----HHHHHHhcC----cCCEEEE
Confidence              36688999999999876543221 11          122232210 00012234    556665553    3678888


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC---CcccccccCCCCCEEEeecccc-CCcccccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~---~~~~~~~~gv~pDivt~sK~lg-~G~pigav  335 (447)
                      ++..++++|.+. |++++++|.++|++||+++|+||+|++|.. |.   .++.+ ..+..+++.+++|.++ +|+|+|++
T Consensus       158 ~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~G~~  234 (381)
T 1v2d_A          158 LNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-APERTFTVGSAGKRLEATGYRVGWI  234 (381)
T ss_dssp             EESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred             ECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-cCCCEEEEeechhhcCCcccceEEE
Confidence            888888888875 678999999999999999999999999854 42   22222 3566677778999998 79999999


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      ++++++++.+.......+|+.|+++++++.++|+...  +  +++.++++++.++|.+.|+++  .+....  ...|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~  310 (381)
T 1v2d_A          235 VGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM--GLRVYV--PEGTYFL  310 (381)
T ss_dssp             ECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT--TCCEEC--CSBSSEE
T ss_pred             EeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC--CCEecC--CCcceEE
Confidence            9999998887654455688899999999999998662  2  345666777777777777763  222211  2236788


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+.           . +.+.|.++||++.+
T Consensus       311 ~~~~~~~-----------~-~~~~l~~~gi~v~~  332 (381)
T 1v2d_A          311 MAELPGW-----------D-AFRLVEEARVALIP  332 (381)
T ss_dssp             EEECTTC-----------C-HHHHHHHTCEECEE
T ss_pred             EEecChH-----------h-HHHHHHhCCEEEec
Confidence            7776311           1 55667889999864

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=3.4e-26  Score=230.46  Aligned_cols=303  Identities=17%  Similarity=0.173  Sum_probs=210.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCceEEEcCCHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE  169 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~v~~~~sGse  169 (447)
                      +|+.+|||.+|..  .+++ +|.+.+|+.++++...   ..|.. ....++.+.|++++    +  ...+++++++||++
T Consensus        39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~---~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~  112 (389)
T 1o4s_A           39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGE---VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ  112 (389)
T ss_dssp             TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCC---CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHH
Confidence            5788999998876  5674 7999999999987632   12322 22345555555543    3  24578999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |++.+++.+.  .++++|++.+++||+....+...+.           .+..++..  ....|..|    .++|++.+. 
T Consensus       113 al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~-  172 (389)
T 1o4s_A          113 ALFNAFMALL--DPGDEVIVFSPVWVSYIPQIILAGG-----------TVNVVETF--MSKNFQPS----LEEVEGLLV-  172 (389)
T ss_dssp             HHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECC--GGGTTCCC----HHHHHHTCC-
T ss_pred             HHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcCC-----------EEEEEecC--CccCCCCC----HHHHHHhcc-
Confidence            9999998763  3567899999999987654432211           12222221  11123334    566776654 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC--CCC--EEEeecc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPD--IVTMAKG  325 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv--~pD--ivt~sK~  325 (447)
                        + ++++|+++..++++|.+. |++++++|.++|++||+++|+||+|++|.+.| .......++.  ..|  +.+++|.
T Consensus       173 --~-~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~  247 (389)
T 1o4s_A          173 --G-KTKAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKS  247 (389)
T ss_dssp             --T-TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTT
T ss_pred             --c-CceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhh
Confidence              2 567788877788888765 67899999999999999999999999988766 3333322221  224  4478999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                      ++ +|+|+|++++++++++.+.......+++.|+++++++.++|+.. -+++.++++++.+++.+.|+++  .+..+.  
T Consensus       248 ~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--  322 (389)
T 1o4s_A          248 HSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFVE--  322 (389)
T ss_dssp             TTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCCC--
T ss_pred             cCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeeec--
Confidence            98 79999999999999888765445567889999999888887532 3456778888888888888875  333321  


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ...|+++++++. .         ...++.+.|+ ++||++.+
T Consensus       323 ~~~~~~~~~~~~-~---------~~~~l~~~l~~~~gi~v~~  354 (389)
T 1o4s_A          323 PEGAFYLFFKVR-G---------DDVKFCERLLEEKKVALVP  354 (389)
T ss_dssp             CSBSSEEEEECS-S---------CHHHHHHHHHHHHCEECEE
T ss_pred             CCcceEEEEeCC-C---------CHHHHHHHHHHHCCEEEeC
Confidence            223667777763 0         1356888887 88999864

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.94  E-value=3.8e-26  Score=229.62  Aligned_cols=306  Identities=12%  Similarity=0.106  Sum_probs=207.1

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCce-EEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKV-VFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~-v~~~~sGseA  170 (447)
                      ..+|||.+|..  .++ .+|++.+++.++++...   ..|.. ....++.+.|++++    +  .+.++ +++++||++|
T Consensus        26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a   99 (389)
T 1gd9_A           26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGL---THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA   99 (389)
T ss_dssp             SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred             cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHH
Confidence            36799988875  466 68999999999987632   12222 12344555555443    4  34567 9999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      ++.+++.+.  .++++|++.+++||+....+...+.           .+..++..  ....|..|    .++|++.+.. 
T Consensus       100 ~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~~-  159 (389)
T 1gd9_A          100 FLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILAGG-----------KPVEVPTY--EEDEFRLN----VDELKKYVTD-  159 (389)
T ss_dssp             HHHHHTTTC--CTTCEEEEEESCCTTHHHHHHHHTC-----------EEEEEECC--GGGTTCCC----HHHHHHHCCT-
T ss_pred             HHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccC--CccCCCCC----HHHHHHhcCc-
Confidence            999998652  3567899999999987654432211           12223221  11123234    5677776642 


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CC-CCCEE--Eeeccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GV-VPDIV--TMAKGI  326 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv-~pDiv--t~sK~l  326 (447)
                         ++++|+++..++++|.+. |++.+++|.++|++||+++|+||+|++|.+.|.....+..+ +. ..|++  +++|.+
T Consensus       160 ---~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  235 (389)
T 1gd9_A          160 ---KTRALIINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF  235 (389)
T ss_dssp             ---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT
T ss_pred             ---CceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhc
Confidence               567777777788888764 67899999999999999999999999998776323333332 21 23544  689999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~----~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      + +|+|+|++++++++++.+.......+++.|+++++++.++|+..++    +++.++++++.+++.+.|+++  .+..+
T Consensus       236 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  313 (389)
T 1gd9_A          236 AMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM--GLPTV  313 (389)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCC
T ss_pred             CCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc--CCeec
Confidence            8 7999999999999998887555556788999999999999875443    234455666666676666654  23222


Q ss_pred             eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                        .+..|+++++++....       ....++.+.|+ ++||++.+
T Consensus       314 --~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~  349 (389)
T 1gd9_A          314 --KPKGAFYIFPRIRDTG-------LTSKKFSELMLKEARVAVVP  349 (389)
T ss_dssp             --CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHTCEECEE
T ss_pred             --CCCeeeEEEEeccCCC-------CCHHHHHHHHHHhCCEEEeC
Confidence              1233666777763210       01357888898 89999864

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.94  E-value=6.4e-26  Score=227.86  Aligned_cols=311  Identities=11%  Similarity=0.050  Sum_probs=208.2

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE  172 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e  172 (447)
                      +|+.+|||.+|..  .++ .+|.+.+|+.++++...  +.......+...++++.+.+..+  .+.++|++++||++|++
T Consensus        28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  104 (388)
T 1j32_A           28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence            6889999998876  566 68999999999886531  11111122333444444443322  34578999999999999


Q ss_pred             HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (447)
Q Consensus       173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (447)
                      .+++.+.  .++++|++.+++||+....+...             |...+..|......|..|    .++|++.+.   +
T Consensus       105 ~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---~  162 (388)
T 1j32_A          105 NLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT---P  162 (388)
T ss_dssp             HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC---T
T ss_pred             HHHHHhc--CCCCEEEEcCCCChhHHHHHHHc-------------CCEEEEecCCcccCCCCC----HHHHHHhcC---c
Confidence            9999763  35678999999999866543321             222222222111123334    567777664   2


Q ss_pred             CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---cccccc--cCCCCCEEEeecccc
Q 013235          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEA--HGVVPDIVTMAKGIG  327 (447)
Q Consensus       253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~--~gv~pDivt~sK~lg  327 (447)
                       ++++|++++.++++|.+. |++.+++|.++|++||+++|+||+|++|.+.|..   ++.+..  ++..+++.+++|.++
T Consensus       163 -~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~  240 (388)
T 1j32_A          163 -KTKLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA  240 (388)
T ss_dssp             -TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred             -CceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC
Confidence             577888887788888875 6789999999999999999999999999876632   222221  445566778999998


Q ss_pred             -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                       +|+|+|++++++++++.+.......+++.++++++++.++|+..++  +++.++++++.+++.+.|+++    +.+.-+
T Consensus       241 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~  316 (388)
T 1j32_A          241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM----PGLECP  316 (388)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC----TTCBCC
T ss_pred             CcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC----CCCccc
Confidence             7999999999999988876544557888999999999988874321  234556666666776666553    222222


Q ss_pred             ee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          405 RG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       405 rg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      .. .|+++++++....       ....++.+.|++ +||++.+
T Consensus       317 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~  352 (388)
T 1j32_A          317 KPDGAFYMFPSIAKTG-------RSSLDFCSELLDQHQVATVP  352 (388)
T ss_dssp             CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHHCEECEE
T ss_pred             CCCeeEEEEEecCCCC-------CCHHHHHHHHHHhCCEEEeC
Confidence            23 3555555552100       013568888886 7999864

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.94  E-value=4.5e-26  Score=231.18  Aligned_cols=310  Identities=13%  Similarity=0.060  Sum_probs=206.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhc--ccccccccchHHHHHHHHHHHhCC--CCCc-eEEEcCCHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--QHSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANELA  174 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~--~~~~~~~~~~~~~elae~L~~~~~--~~~~-~v~~~~sGseA~e~A  174 (447)
                      .+|||.+|..  .++ .+|.+.+|+.++++..  .+....+..+...++++.+.+.++  .+.+ +|++++||++|++.+
T Consensus        26 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~  102 (411)
T 2o0r_A           26 GAVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA  102 (411)
T ss_dssp             TCEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred             CeeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence            3789988875  466 6899999999999762  111111112333344444443323  3355 899999999999999


Q ss_pred             HHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      ++.+.  .++++|++.+++||+....+... +.          .+..++.... ...|..|    .++|++.+.    .+
T Consensus       103 ~~~~~--~~gd~Vl~~~~~y~~~~~~~~~~-g~----------~~~~v~~~~~-~~~~~~d----~~~l~~~l~----~~  160 (411)
T 2o0r_A          103 VLGLV--EPGSEVLLIEPFYDSYSPVVAMA-GA----------HRVTVPLVPD-GRGFALD----ADALRRAVT----PR  160 (411)
T ss_dssp             HHHHC--CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECEEE-TTEEECC----HHHHHHHCC----TT
T ss_pred             HHHhc--CCCCEEEEeCCCcHhHHHHHHHc-CC----------EEEEeecccc-ccCCCCC----HHHHHHhhc----cC
Confidence            98763  35688999999999865543322 11          1122221100 0012234    567777664    26


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc----cCCCCCEEEeecccc-CC
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMAKGIG-NG  329 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~----~gv~pDivt~sK~lg-~G  329 (447)
                      +++|+++..++++|.+. +.+++++|.++|++||+++|+||+|++|+++|.....+..    .+....+.+++|.++ +|
T Consensus       161 ~~~v~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  239 (411)
T 2o0r_A          161 TRALIINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG  239 (411)
T ss_dssp             EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred             ceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence            77888888888889775 6789999999999999999999999999887732222222    233344557899998 79


Q ss_pred             ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec
Q 013235          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~  407 (447)
                      +|+|++++++++++.+.......+|+.|+++++++.++|+..++  +++.++++++.+++.+.|+++    ++....+..
T Consensus       240 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~  315 (411)
T 2o0r_A          240 WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYG  315 (411)
T ss_dssp             TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCB
T ss_pred             ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCe
Confidence            99999999999998876544556788899999999999975422  245566666777777777664    221112344


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      |+++++++.....   .   ...++.+.|+ ++||++.+
T Consensus       316 g~~~~~~~~~~~~---~---~~~~~~~~l~~~~gi~v~~  348 (411)
T 2o0r_A          316 TYFLCADPRPLGY---D---DSTEFCAALPEKVGVAAIP  348 (411)
T ss_dssp             SSEEEEECGGGTC---C---CHHHHHHHHHHHHSEECEE
T ss_pred             eEEEEEecCCCCC---C---CHHHHHHHHHHhCCEEEcC
Confidence            7788888843100   0   1356778776 67999864

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.94  E-value=7.1e-26  Score=225.53  Aligned_cols=297  Identities=14%  Similarity=0.097  Sum_probs=206.1

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      .+|+.+|||.+|..  +++ .+|+|.+|+.++++...+....|+++...+++++|+++++.+.++|++++||++|++.++
T Consensus        23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~   99 (360)
T 3hdo_A           23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI   99 (360)
T ss_dssp             SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred             ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence            57789999998876  455 789999999999887422223455555678999999998766788999999999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      +...  ..+++|++.+++|++....+...+.           .+..++..+.    +.      +   +++++...   .
T Consensus       100 ~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~----~~------~---~~l~~~~~---~  150 (360)
T 3hdo_A          100 RAFA--AEGEEIGYVHPSYSYYGTLAEVQGA-----------RVRTFGLTGD----FR------I---AGFPERYE---G  150 (360)
T ss_dssp             HHHC--CTTCEEEEESSSCTHHHHHHHHHTC-----------EEEEECBCTT----SS------B---TTCCSSBC---S
T ss_pred             HHHh--CCCCEEEEcCCChHHHHHHHHHCCC-----------EEEEeeCCCC----CC------H---HHHHhhcC---C
Confidence            8653  2558899999999987655443321           1222222111    11      1   11222121   2


Q ss_pred             EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-CCccccc
Q 013235          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGA  334 (447)
Q Consensus       256 aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~piga  334 (447)
                      .+++++..++++|.+.+    ++++.++|+++|+++|+||+|++|+..+ .....+..+....+.+++|.++ +|+++|+
T Consensus       151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  225 (360)
T 3hdo_A          151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESN-ALELVRRHENVVVTRTLSKSYSLAGMRIGL  225 (360)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCC-CTHHHHHCSSEEEEEESTTTTSCTTSCCEE
T ss_pred             CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcc-hhHHhccCCCEEEEecchHhhcCCccceee
Confidence            25555556788888887    7899999999999999999999885433 2222244444455668999998 7999999


Q ss_pred             cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (447)
Q Consensus       335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi  413 (447)
                      +++++++++.+...  ..+|+.|+++++++.++|+..+ -++..++.+++.+++.+.|+++    + +..+++.|.++++
T Consensus       226 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~  298 (360)
T 3hdo_A          226 AIARPEVIAALDKI--RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----G-YDVIPSQGNYLFA  298 (360)
T ss_dssp             EECCHHHHHHHHHH--SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CEECCCSSSEEEE
T ss_pred             EeeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-CEEcCCCccEEEE
Confidence            99999999888643  2568899999999999997421 1233444555555555555543    3 3345778888887


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++...         ...++.+.|.++||++.+
T Consensus       299 ~~~~~---------~~~~l~~~l~~~gi~v~~  321 (360)
T 3hdo_A          299 TPPDR---------DGKRVYDGLYARKVLVRH  321 (360)
T ss_dssp             ECTTC---------CHHHHHHHHHHTTEECBC
T ss_pred             ECCCC---------CHHHHHHHHHHCCEEEEE
Confidence            65311         145788899999999864

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.94  E-value=1.2e-25  Score=228.47  Aligned_cols=321  Identities=12%  Similarity=0.044  Sum_probs=207.4

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-----chHHHHHHHHHHHhCC--CCC-ceEEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKMP--GNL-KVVFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-----~~~~~elae~L~~~~~--~~~-~~v~~~~sGseA  170 (447)
                      ..+|||..|..  .++ .+|.|.+|+.+++.... ....|.     .+...++++.+.+.++  ... ++|++++||++|
T Consensus        28 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a  103 (422)
T 3fvs_A           28 HDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA  103 (422)
T ss_dssp             SCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred             CCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCC-ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence            46789988875  444 78999999999987632 011222     2344455555554332  233 579999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCC-----C---cCCCCCCChHHHHHH
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-----P---YRGVFGADGEMYAKD  242 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~-----~---~~~~~~~d~~~~~~~  242 (447)
                      ++.+++.+.  .+++.|++.+++||+....+...+.           .+..++...     .   ....|..|    .++
T Consensus       104 ~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~G~~~~~~~~~~d----~~~  166 (422)
T 3fvs_A          104 LFTAFQALV--DEGDEVIIIEPFFDCYEPMTMMAGG-----------RPVFVSLKPGPIQNGELGSSSNWQLD----PME  166 (422)
T ss_dssp             HHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECBCCCCCSSSCCBGGGSBCC----HHH
T ss_pred             HHHHHHHHc--CCCCEEEEcCCCchhhHHHHHHcCC-----------EEEEEecccccccccccccccCCCCC----HHH
Confidence            999998763  3567899999999987654443221           111222110     0   00122234    456


Q ss_pred             HHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCC
Q 013235          243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPD  318 (447)
Q Consensus       243 le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pD  318 (447)
                      +++.+.    .++++|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|.++|.....+..+    +...+
T Consensus       167 l~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~  241 (422)
T 3fvs_A          167 LAGKFT----SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLT  241 (422)
T ss_dssp             HHTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEE
T ss_pred             HHhhcC----CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEE
Confidence            665543    2677888888888899876 78889999999999999999999999998887433333332    22344


Q ss_pred             EEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHH
Q 013235          319 IVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-----QKDKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       319 ivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i-----~~~~l~~~~~~~g~~l~~~L~  392 (447)
                      +.+++|.+| +|+|+|++++++++++.+.......+|+.|+++++++.++|+..     ..++..++.++..+..++.|.
T Consensus       242 ~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  321 (422)
T 3fvs_A          242 IGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMI  321 (422)
T ss_dssp             EEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            557899998 79999999999999988865555678999999999999999751     122333344444444444444


Q ss_pred             HHHHhcCCeeeEeecceeEEEEEeeCCCCCC--C---CHHHHHHHHHHHH-hCCceeec
Q 013235          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT--P---AKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       393 ~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~--p---~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +..+++++....+..|+++++++........  +   +.....++++.|+ ++||++.+
T Consensus       322 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~  380 (422)
T 3fvs_A          322 RSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP  380 (422)
T ss_dssp             HHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeC
Confidence            4444444433456678888888743100000  0   0001345677655 47998864

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.94  E-value=7.8e-26  Score=224.20  Aligned_cols=299  Identities=9%  Similarity=0.017  Sum_probs=195.0

Q ss_pred             EeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcC
Q 013235           86 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN  165 (447)
Q Consensus        86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~  165 (447)
                      .+++|.+++|.+|+++|||.+|..  +++ .+|+|.+|+.+++...    ..|+++...+++++|+++++.+.+++++++
T Consensus         2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~   74 (350)
T 3fkd_A            2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCI----RHYPEPDAGTLRQMLAKRNSVDNNAILVTN   74 (350)
T ss_dssp             --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred             cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHH----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence            468999999999999999999875  556 7899999999887433    234544447899999999977678899999


Q ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       166 sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      ||++|++.+++...    ++.|++..++|++....+...+.           .+..++.. .....+  +          
T Consensus        75 g~~~al~~~~~~l~----gd~Vi~~~p~~~~~~~~~~~~g~-----------~~~~v~~~-~~~~~~--~----------  126 (350)
T 3fkd_A           75 GPTAAFYQIAQAFR----GSRSLIAIPSFAEYEDACRMYEH-----------EVCFYPSN-EDIGEA--D----------  126 (350)
T ss_dssp             HHHHHHHHHHHHTT----TCEEEEEESCCHHHHHHHHHTTC-----------EEEEEETT-SCGGGS--C----------
T ss_pred             CHHHHHHHHHHHHC----CCEEEEeCCCcHHHHHHHHHcCC-----------eEEEEecC-CccccC--c----------
Confidence            99999999998665    68899999999987654433211           12222220 100011  0          


Q ss_pred             HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC-CEEEEeccccCccccCCCc-ccccccCCCCCEEEee
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIADEVQAGFARTGSHF-WGFEAHGVVPDIVTMA  323 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g-~llI~DEv~tGfgr~G~~~-~~~~~~gv~pDivt~s  323 (447)
                            ..++.+++++..++++|.+.+    .+++.++++.++ .++|+||+|++|++.+... ...+.++....+.+++
T Consensus       127 ------~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~s  196 (350)
T 3fkd_A          127 ------FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFS  196 (350)
T ss_dssp             ------CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESH
T ss_pred             ------cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCc
Confidence                  124556666666788888775    455555555554 5999999999998776311 1112223323344789


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      |.++ .|+++|++++++++++.+....  .+++.|+++++++.++|+..+  .+.+.+.. ++.+++.+.|++    ++.
T Consensus       197 K~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~----~~~  269 (350)
T 3fkd_A          197 HAYGIPGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNR----LDG  269 (350)
T ss_dssp             HHHSCGGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHH----STT
T ss_pred             hhccCcchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhc----CCC
Confidence            9999 8999999999999999887543  567889999999999987543  12233322 445555555543    444


Q ss_pred             eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       401 i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      +...++.|.++.+.+...         ...++.+.|++ +||++.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~~  306 (350)
T 3fkd_A          270 VEVHPSGTTFFLLRLKKG---------TAAELKKYMLEEYNMLIRD  306 (350)
T ss_dssp             EEECCCSSSEEEEEESSS---------CHHHHHHHHHHTTCEECEE
T ss_pred             cEECCCCCcEEEEECCCC---------CHHHHHHHHHHHCCEEEEe
Confidence            555677888888887431         14678899998 9999874

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.94  E-value=1.6e-25  Score=223.62  Aligned_cols=292  Identities=10%  Similarity=0.084  Sum_probs=204.2

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCceEEEcCCHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE  169 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~v~~~~sGse  169 (447)
                      +|+.+|||.+|..  .+|+ +|.+.+++.++++...   ..|.. ....++++.|++++    +  .+.++|++++||++
T Consensus        27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~---~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~  100 (370)
T 2z61_A           27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGK---THYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSL  100 (370)
T ss_dssp             TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCc---cCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHH
Confidence            4788999998876  5676 7999999999987632   12221 12344455554443    2  34578999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |++.+++.+.  .++++|++.+++||+....+...             |...+..|        .|    .++|++.+..
T Consensus       101 a~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~--------~d----~~~l~~~l~~  153 (370)
T 2z61_A          101 GLFFALSSII--DDGDEVLIQNPCYPCYKNFIRFL-------------GAKPVFCD--------FT----VESLEEALSD  153 (370)
T ss_dssp             HHHHHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEEC--------SS----HHHHHHHCCS
T ss_pred             HHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeC--------CC----HHHHHHhccc
Confidence            9999999763  35578999999999876654332             22222222        12    5677776642


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCC-CCE--EEeecc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVV-PDI--VTMAKG  325 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~-pDi--vt~sK~  325 (447)
                          ++++|+++..++++|.+.+    ++ |.++|++||+++|+||+|++|.+.| ....+..+ +.. .|+  .+++|.
T Consensus       154 ----~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~  223 (370)
T 2z61_A          154 ----KTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKL  223 (370)
T ss_dssp             ----SEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTT
T ss_pred             ----CceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhc
Confidence                5677788777888898876    44 9999999999999999999988777 34333333 121 243  468999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-IQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~-i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      ++ +|+|+|++++++++++.+....+..+++.|+++++++.++|+. .++  +++.++++++.+++.+.|+++  .+..+
T Consensus       224 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  301 (370)
T 2z61_A          224 YAMTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF--GWEVN  301 (370)
T ss_dssp             TTCGGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCBCC
T ss_pred             cCCccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc--CCeec
Confidence            98 7999999999999998887655556788999999999988875 221  345666777777777777765  22221


Q ss_pred             eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .  ...|+++++++..          ...++.+.|+ ++||++.+
T Consensus       302 ~--~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~  334 (370)
T 2z61_A          302 N--PIGAYYVFPNIGE----------DGREFAYKLLKEKFVALTP  334 (370)
T ss_dssp             C--CCBTTEECCBCSS----------CHHHHHHHHHHHHCEECEE
T ss_pred             C--CCcceEEEEecCC----------CHHHHHHHHHHhCCEEEeC
Confidence            1  2336777776632          1356888887 78999864

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.94  E-value=8.1e-26  Score=228.61  Aligned_cols=320  Identities=12%  Similarity=0.041  Sum_probs=206.6

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCC-ceEEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNL-KVVFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~-~~v~~~~sGseA  170 (447)
                      ..+|||..|..  .++ .+|.|.+|+.+++....  ...|... ...++++.|++++    +  ... ++|++++||++|
T Consensus        23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a   97 (410)
T 3e2y_A           23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDN--MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS   97 (410)
T ss_dssp             TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGG--GGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred             CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCcc--ccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence            45788888764  344 68999999999987531  1122221 1334444444443    2  233 689999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-------cCCCCCCChHHHHHHH
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-------YRGVFGADGEMYAKDV  243 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-------~~~~~~~d~~~~~~~l  243 (447)
                      ++.+++.+.  .+++.|++..++||+........+.           .+..++....       ....|..|    .+++
T Consensus        98 ~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~g~~~~~~~~~~d----~~~l  160 (410)
T 3e2y_A           98 LFNSIQGLV--DPGDEVIIMVPFYDCYEPMVRMAGA-----------VPVFIPLRSKPTDGMKWTSSDWTFD----PREL  160 (410)
T ss_dssp             HHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECEECCCCSSCCBGGGEECC----HHHH
T ss_pred             HHHHHHHhc--CCCCEEEEeCCCchhhHHHHHHcCC-----------EEEEEeccccccccccccccCCcCC----HHHH
Confidence            999998763  3567899999999977654433221           1111211100       00112223    4566


Q ss_pred             HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccC----CCCCE
Q 013235          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG----VVPDI  319 (447)
Q Consensus       244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~g----v~pDi  319 (447)
                      ++.+.    .++++|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|.++|.....+..+.    ...++
T Consensus       161 ~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  235 (410)
T 3e2y_A          161 ESKFS----SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI  235 (410)
T ss_dssp             HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEE
T ss_pred             HhhcC----CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEE
Confidence            65543    3678888888889999876 677899999999999999999999999988884333333332    22344


Q ss_pred             EEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHH
Q 013235          320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-----QKDKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       320 vt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i-----~~~~l~~~~~~~g~~l~~~L~~  393 (447)
                      .++||.+| +|+|+|++++++++++.+.......+++.|+++++++.++|+..     ..++..++..+..+..++.|.+
T Consensus       236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  315 (410)
T 3e2y_A          236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR  315 (410)
T ss_dssp             EEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            47899999 89999999999999988876556678999999999999998741     1133344444444444444444


Q ss_pred             HHHhcCCeeeEeecceeEEEEEeeCCCCCCC---CHHHHHHHHHHH-HhCCceeec
Q 013235          394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAETLYIMDKM-KGICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p---~~~~~~~~~~~l-~~~Gvlv~~  445 (447)
                      ..+++++....+..|+++++++.........   ......++++.+ .++||++.+
T Consensus       316 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~  371 (410)
T 3e2y_A          316 LLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIP  371 (410)
T ss_dssp             HHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEE
T ss_pred             HHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeC
Confidence            4444454444566788888888542211000   001123566655 467999864

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.94  E-value=7.9e-26  Score=230.77  Aligned_cols=323  Identities=9%  Similarity=0.021  Sum_probs=220.2

Q ss_pred             CeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhCC-----
Q 013235           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP-----  155 (447)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~~-----  155 (447)
                      ++....+....+++.+|+.+|||.+|..  +++ .+|+|.+|+.+++....  ...|... ...++++.|++++.     
T Consensus        27 ~~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~g~  101 (437)
T 3g0t_A           27 SIRDLVALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGV--ASIYPNLDGLPELKQEASRFAKLFVNI  101 (437)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTG--GGSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCc--CcCCCCCCChHHHHHHHHHHHHHhhCC
Confidence            3333344556667888999999999986  455 78999999999987521  1223322 23455555555543     


Q ss_pred             -CCCceEEEcCCHHHHHHHHHHHHHhhcCCC--eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235          156 -GNLKVVFFTNSGTEANELAIMMARLYTGCN--DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (447)
Q Consensus       156 -~~~~~v~~~~sGseA~e~Aik~ar~~t~~~--~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (447)
                       ...++|++++||++|++.+++......+++  +|++..++||+....+...+.           .+..++..   ...|
T Consensus       102 ~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~~~  167 (437)
T 3g0t_A          102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQ-----------KFESFDLF---EYRG  167 (437)
T ss_dssp             CCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTC-----------CCEEEEGG---GGCT
T ss_pred             CCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCC-----------EEEEEeec---CCCC
Confidence             346789999999999999998765213556  899999999987665544321           12222221   0111


Q ss_pred             CCChHHHHHHHHHHHHccCCCCeEEE-EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cc---
Q 013235          233 GADGEMYAKDVQDLIDFGTSGHVAGF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HF---  307 (447)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~aav-i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~---  307 (447)
                      ..|    .++|++.++.  + ++.+| ++.| ++++|.+. +.+.+++|.++|++||+++|+||+|++|.+.+. ..   
T Consensus       168 ~~d----~~~l~~~l~~--~-~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~  238 (437)
T 3g0t_A          168 EKL----REKLESYLQT--G-QFCSIIYSNP-NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGE  238 (437)
T ss_dssp             THH----HHHHHHHHTT--T-CCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTS
T ss_pred             ccC----HHHHHHHHhc--C-CceEEEEeCC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccc
Confidence            112    5678877742  2 34444 5566 67778765 677799999999999999999999998766541 11   


Q ss_pred             ----ccccc-cCCCCCEEEeecccc-CCccccccccCHHHHH-h-----------------hcCCcccccCCCChHHHHH
Q 013235          308 ----WGFEA-HGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE-V-----------------LTRRNYFNTFGGNPVCTAA  363 (447)
Q Consensus       308 ----~~~~~-~gv~pDivt~sK~lg-~G~pigav~~~~~i~~-~-----------------l~~~~~~~T~~~np~a~aa  363 (447)
                          ..+.. .+....+.+++|.++ .|+++|++++++++++ .                 +.......+++.|++++++
T Consensus       239 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  318 (437)
T 3g0t_A          239 PLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWG  318 (437)
T ss_dssp             SCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHH
T ss_pred             cchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHH
Confidence                22221 333333457899999 8999999999999998 7                 6554455688999999999


Q ss_pred             HHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------Ee-ecceeEEEEEeeCCCCCCCCHHHHHH
Q 013235          364 GHAVLKVIQ-----KDKLQNNAHVVGSYLKERLTALKDKYGIIGD------VR-GRGFLLGVEFVTDRQLKTPAKAETLY  431 (447)
Q Consensus       364 ala~L~~i~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------vr-g~Gl~~giel~~~~~~~~p~~~~~~~  431 (447)
                      +.++|+..+     -++..++++++.+++.+.|+++    ++...      .+ ..|+++++++. .        ....+
T Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~  385 (437)
T 3g0t_A          319 MAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYK-G--------MDSSK  385 (437)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEET-T--------CCHHH
T ss_pred             HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecC-C--------CCHHH
Confidence            999998765     2456667777777777777665    22111      24 67888888884 1        01457


Q ss_pred             HHHHHHhCCceeec
Q 013235          432 IMDKMKGICALFFS  445 (447)
Q Consensus       432 ~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++||++.+
T Consensus       386 l~~~L~~~gi~v~~  399 (437)
T 3g0t_A          386 LIEKFVRYGMCAIT  399 (437)
T ss_dssp             HHHHHHHTTEECEE
T ss_pred             HHHHHHHcCeEEee
Confidence            88999999999864

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.94  E-value=1.6e-26  Score=234.20  Aligned_cols=317  Identities=12%  Similarity=0.018  Sum_probs=204.0

Q ss_pred             CCCeEEEecCCcccccCCCC--CHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEE--cC
Q 013235           97 NGRRYLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--TN  165 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~--~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~--~~  165 (447)
                      +|+.+|||..|....+.||.  +|.|.+|+.+++..... ...| +.....+|+++|+++++.      ..++|+|  ++
T Consensus        28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~  106 (412)
T 1ajs_A           28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSL  106 (412)
T ss_dssp             CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred             CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECC
Confidence            36778999998864455554  48999999888732111 1223 344457788888887732      3478999  99


Q ss_pred             CHHHHHHHHHHHHHhhcCC-----CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235          166 SGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (447)
Q Consensus       166 sGseA~e~Aik~ar~~t~~-----~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (447)
                      ||++|++.++++++...++     ++|++..++||+....+...+..          .+..++..  ....++.|    .
T Consensus       107 gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~----------~~~~~~~~--~~~~~~~d----~  170 (412)
T 1ajs_A          107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK----------DIRSYRYW--DTEKRGLD----L  170 (412)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS----------CEEEEECE--ETTTTEEC----H
T ss_pred             CcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCc----------eeEEEeee--cCCCCccC----H
Confidence            9999999999877655556     88999999999877655443211          02222220  00122234    5


Q ss_pred             HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC--CCcccccccCCCCC
Q 013235          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGFEAHGVVPD  318 (447)
Q Consensus       241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G--~~~~~~~~~gv~pD  318 (447)
                      +++++.+....+ +..++++...++++|.+ ++.+++++|.++|++||+++|+||+|++|+++|  ...+.+..+...+|
T Consensus       171 ~~l~~~l~~~~~-~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
T 1ajs_A          171 QGFLSDLENAPE-FSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF  248 (412)
T ss_dssp             HHHHHHHHHSCT-TCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCC-CcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence            677777765333 34455444445555654 578999999999999999999999999998875  12334443322344


Q ss_pred             ----EEEeeccccC-Ccccccccc---CHHHHHh----hcCCcccccCC-CChHHHHHHHHHHHHHh--------hhhHH
Q 013235          319 ----IVTMAKGIGN-GIPLGAVVT---TPEIAEV----LTRRNYFNTFG-GNPVCTAAGHAVLKVIQ--------KDKLQ  377 (447)
Q Consensus       319 ----ivt~sK~lg~-G~pigav~~---~~~i~~~----l~~~~~~~T~~-~np~a~aaala~L~~i~--------~~~l~  377 (447)
                          +.+++|.+|. |+|+|++++   ++++++.    +.. .+..+++ .|+++++++.++|+..+        -+++.
T Consensus       249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  327 (412)
T 1ajs_A          249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK-IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA  327 (412)
T ss_dssp             CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence                4479999997 999999999   8874443    322 1335666 49999999999997542        13456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++++.+++.+.|+++..........+..|+++++++        +    ...+.+.+.++||++.+
T Consensus       328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~  383 (412)
T 1ajs_A          328 DRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL--------N----PKQVEYLINQKHIYLLP  383 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC--------C----HHHHHHHHHTTCEECCT
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC--------C----HHHHHHHHHhCCEEecC
Confidence            66777777777777665200001111233456665543        1    23344556688999864

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.94  E-value=1.1e-25  Score=229.38  Aligned_cols=313  Identities=12%  Similarity=0.050  Sum_probs=204.0

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHH---------hcccccccccchH-HHHHHHHHHHhCC--------CCCceE
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK---------RIQHSTVLYLNHA-IADFAEALASKMP--------GNLKVV  161 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~---------~~~~~~~~~~~~~-~~elae~L~~~~~--------~~~~~v  161 (447)
                      .+|||.++..  +++  +|.+.+++.++..         .+. ....|+++. ..+|.+.|+++++        .+.+++
T Consensus        37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i  111 (428)
T 1iay_A           37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV  111 (428)
T ss_dssp             SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred             ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence            5789987765  455  4788888875431         110 012344332 4566666666543        446789


Q ss_pred             EEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHH
Q 013235          162 FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK  241 (447)
Q Consensus       162 ~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~  241 (447)
                      ++++|++++++.+++.+..  +++.|++.+++||+.........            |+..+..|......|+.|    .+
T Consensus       112 ~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~d----~~  173 (428)
T 1iay_A          112 VMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRT------------GVQLIPIHCESSNNFKIT----SK  173 (428)
T ss_dssp             EEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTT------------CCEEEEECCCTTTTTCCC----HH
T ss_pred             EEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhc------------CCEEEEeecCCccCCcCC----HH
Confidence            9999999999999987643  45789999999998654332221            222222222111223345    55


Q ss_pred             HHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc------
Q 013235          242 DVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH------  313 (447)
Q Consensus       242 ~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~------  313 (447)
                      ++++.++..  ...++++|+++..++++|.+. +++++++|.++|++||+++|+||+|++|++.|..+..+..+      
T Consensus       174 ~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~  252 (428)
T 1iay_A          174 AVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM  252 (428)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence            666666431  122567666665567788765 78999999999999999999999999987766222122111      


Q ss_pred             -CCCCC----EEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh---h--hhHHHHHH
Q 013235          314 -GVVPD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---K--DKLQNNAH  381 (447)
Q Consensus       314 -gv~pD----ivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~---~--~~l~~~~~  381 (447)
                       ++.+|    +.+++|.+| +|+|+|++++ ++++++.+..  ...+++.|+++++++.++|+..+   +  +++.++++
T Consensus       253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  330 (428)
T 1iay_A          253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK--MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG  330 (428)
T ss_dssp             TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH--HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH--HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence             23478    457999998 8999999998 6888887753  23457789999999888886432   1  24556666


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          382 VVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      +..++|.+.|+++  .+.   -+++ .|+|+++++....  ..+......++.+.|+++ ||++.+
T Consensus       331 ~~~~~l~~~L~~~--g~~---~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~  389 (428)
T 1iay_A          331 KRHKHFTNGLEVV--GIK---CLKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSP  389 (428)
T ss_dssp             HHHHHHHHHHHHT--TCC---BCCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEE
T ss_pred             HHHHHHHHHHHhc--CCc---ccCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeC
Confidence            6777777777665  222   2344 6889999884321  112222345788999886 999874

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.94  E-value=3.4e-24  Score=216.38  Aligned_cols=299  Identities=18%  Similarity=0.184  Sum_probs=207.4

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc----ccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST----VLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~----~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~  171 (447)
                      ||++|+||.++.+ ..+|+ +|+|.+|+.++++......    ..| ..+...+++++|+++++. .+.+ +.+||++++
T Consensus        44 ~g~~~i~~~~~~~-~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i-~~~sG~~a~  119 (401)
T 2bwn_A           44 GKQDITVWCGNDY-LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAAL-VFSSAYNAN  119 (401)
T ss_dssp             CEEEEEECSCSCT-TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEE-EESCHHHHH
T ss_pred             CCCcEEEeeCCCc-ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEE-EECCcHHHH
Confidence            7899999987543 23453 7899999999998753211    112 356788999999999965 3445 458888899


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ..++++.....+++.|++..+.|++.... ....+.          .+..++.         +|    .+++++++....
T Consensus       120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~-~~~~g~----------~~~~v~~---------~d----~~~le~~l~~~~  175 (401)
T 2bwn_A          120 DATLSTLRVLFPGLIIYSDSLNHASMIEG-IKRNAG----------PKRIFRH---------ND----VAHLRELIAADD  175 (401)
T ss_dssp             HHHHHHHHHHSTTCEEEEETTCCHHHHHH-HHHSCC----------CEEEECT---------TC----HHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCCCCEEEECchhhHHHHHH-HHHcCC----------eEEEEcC---------CC----HHHHHHHHHhhc
Confidence            99988643222446777777666544432 222111          1222221         13    567888887543


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc--CccccCCCcccccccCC--CCCEE--Eeecc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWGFEAHGV--VPDIV--TMAKG  325 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--Gfgr~G~~~~~~~~~gv--~pDiv--t~sK~  325 (447)
                      ++++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+  .||++| ..+. ..+++  .+|++  ++||+
T Consensus       176 ~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~-~~~~~~~~~~i~~~s~sK~  249 (401)
T 2bwn_A          176 PAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVA-ERDGLMHRIDIFNGTLAKA  249 (401)
T ss_dssp             TTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHH-HHHTCGGGCSEEEEESSST
T ss_pred             cCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCC-ceee-eccCccccCcEEEeechhh
Confidence            346789999999999999876    9999999999999999999998  356666 3332 44444  34655  79999


Q ss_pred             ccC-CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          326 IGN-GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       326 lg~-G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      ++. |   |++++++++++.+...  .+..+.+.++++++++.++|+.+++.   ++.++++++.+++.+.|+++  .+.
T Consensus       250 ~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  324 (401)
T 2bwn_A          250 YGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMP  324 (401)
T ss_dssp             TCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCC
T ss_pred             ccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCc
Confidence            983 4   7888899988877532  12223345788999999999988763   67888899999999999886  443


Q ss_pred             CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       400 ~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .+   ...|.++++++.        ......++.+.|+ ++||++.+
T Consensus       325 ~~---~~~~~~~~~~~~--------~~~~~~~~~~~L~~~~gi~v~~  360 (401)
T 2bwn_A          325 II---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQP  360 (401)
T ss_dssp             BC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCE
T ss_pred             cc---CCCCCeEEEEeC--------ChHHHHHHHHHHHhcCCEEEee
Confidence            33   224557888763        1233567888896 78999853

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.93  E-value=1e-25  Score=231.14  Aligned_cols=314  Identities=13%  Similarity=0.095  Sum_probs=210.6

Q ss_pred             ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccc-chHHHHHHHHHHHhC----CCCCceEEEcCCH
Q 013235           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG  167 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~-~~~~~elae~L~~~~----~~~~~~v~~~~sG  167 (447)
                      +.+|+.+|||.+|..  .+. .+|.|.+|+.++++...  +....|. .....+|+++|++++    +...++|+|++|+
T Consensus        65 ~~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~  141 (449)
T 3qgu_A           65 KNPDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGS  141 (449)
T ss_dssp             HCTTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred             hCCCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCH
Confidence            346899999999865  344 68999999999998653  2223343 344678888888886    5566789999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      +++++.+..+   ..+++.|++.+++||+....+...+....++. .....+..++...  ...+..|       +++  
T Consensus       142 ~~al~~~~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~~~~--~~~~~~~-------~~~--  206 (449)
T 3qgu_A          142 KCDIARIQMM---FGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-TGFDGIEYMVCNP--DNHFFPD-------LSK--  206 (449)
T ss_dssp             HHHHHHHHHH---HCSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-SSBTTEEEEECCG--GGTTCCC-------GGG--
T ss_pred             HHHHHHHHHH---hCCCCEEEEcCCCChhHHHHHHHcCCcccccc-cccceeEEEeccc--ccCCcCC-------hhH--
Confidence            9999988332   23668899999999998876665543211110 0011233333221  1111112       111  


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCCEEEee
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMA  323 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pDivt~s  323 (447)
                        .  .++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|++|++.|.....+..+    ++..++.++|
T Consensus       207 --~--~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  281 (449)
T 3qgu_A          207 --A--KRTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFS  281 (449)
T ss_dssp             --C--CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECS
T ss_pred             --c--CCCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecch
Confidence              1  2456677767778888765 77889999999999999999999999998876322233332    3344566899


Q ss_pred             cccc-CCccccccccCHHHHH--------hhcCCcccccCCCChHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHH
Q 013235          324 KGIG-NGIPLGAVVTTPEIAE--------VLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERL  391 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~--------~l~~~~~~~T~~~np~a~aaala~L~~i~---~~~l~~~~~~~g~~l~~~L  391 (447)
                      |.+| +|+|+|++++++++++        .+.......+++.|+++++++.++|+...   -+++.++++++.++|++.|
T Consensus       282 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  361 (449)
T 3qgu_A          282 KYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTF  361 (449)
T ss_dssp             GGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 8999999999988765        22222233455789999999999886521   2345666777777777777


Q ss_pred             HHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          392 TALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      +++    ++ .-+.. .|+++++.+. .        ....++++.|+++ ||++.+
T Consensus       362 ~~~----g~-~~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~p  403 (449)
T 3qgu_A          362 TEM----GF-SVYGGDDAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTP  403 (449)
T ss_dssp             HHT----TC-CEEESSSSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEE
T ss_pred             HHC----CC-eeeCCCCeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEec
Confidence            665    22 22333 4788888873 1        0135688888876 999864

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.93  E-value=3.6e-25  Score=221.32  Aligned_cols=271  Identities=14%  Similarity=0.099  Sum_probs=193.0

Q ss_pred             chHHHHHHHHHHHhC-CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          140 NHAIADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       140 ~~~~~elae~L~~~~-~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      .....+|+++|++++ +.+.+++++++||++|++.+++...  .+++.|++..++|++........             |
T Consensus        62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g  126 (375)
T 3op7_A           62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--EPGDHVISLYPTYQQLYDIPKSL-------------G  126 (375)
T ss_dssp             TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEEESSCTHHHHHHHHT-------------T
T ss_pred             CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------C
Confidence            444678999999987 3456789999999999999998653  35688999999999866544322             2


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  298 (447)
                      ...+..|......|..|    .++|++.+.    .++++|++++.++++|.+. +++++++|.++|++||+++|+||+|+
T Consensus       127 ~~~~~v~~~~~~~~~~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~  197 (375)
T 3op7_A          127 AEVDLWQIEEENGWLPD----LEKLRQLIR----PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYR  197 (375)
T ss_dssp             CEEEEEEEEGGGTTEEC----HHHHHHHCC----TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred             CEEEEEeccccCCCCCC----HHHHHHhhc----cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            22222211111112223    567777664    2677888998889999766 78889999999999999999999999


Q ss_pred             CccccCCCcccccccCCCCCEEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH
Q 013235          299 GFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ  377 (447)
Q Consensus       299 Gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~  377 (447)
                      +|++.+ .....+.++..+++.+++|.++ +|+|+|++++++++++.+.......+++.++++++++.++|+..  +++.
T Consensus       198 ~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~  274 (375)
T 3op7_A          198 SFSELD-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY--QEIL  274 (375)
T ss_dssp             CCSSSC-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH--HHHH
T ss_pred             cccccC-CCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc--HHHH
Confidence            998764 3333456677788889999998 79999999999999999987767788899999999999988743  2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeec
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFS  445 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~  445 (447)
                      ++.++..+..++.|.+..++++.+..++.. |.+..+.+..+.        ...++++.| .++||++.+
T Consensus       275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~  336 (375)
T 3op7_A          275 ERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVP  336 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeC
Confidence            444444444445555544455555544444 455666663211        135677777 578999864

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.93  E-value=4.2e-26  Score=229.68  Aligned_cols=318  Identities=12%  Similarity=0.032  Sum_probs=196.8

Q ss_pred             EecCCCeEEEecCCcccccCC--CCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEE-
Q 013235           94 FDENGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF-  163 (447)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~-  163 (447)
                      .+..|+.+|||.+|.+..+.|  +.+|.|.+|+.++++.. . ...| +.....+|+++|++++..      +.++|++ 
T Consensus        21 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~   98 (396)
T 2q7w_A           21 RADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE-T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA   98 (396)
T ss_dssp             -------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred             hccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcc-c-ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence            334567899999998655556  56799999999887653 1 1223 344456777777777621      2467888 


Q ss_pred             -cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHH
Q 013235          164 -TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD  242 (447)
Q Consensus       164 -~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~  242 (447)
                       ++||++|++.++++++...++++|++.+++||+....+...+.           .+..++.  .....++.|    .++
T Consensus        99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~--~~~~~~~~d----~~~  161 (396)
T 2q7w_A           99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-----------EVREYAY--YDAENHTLD----FDA  161 (396)
T ss_dssp             EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-----------EEEEEEC--EETTTTEEC----HHH
T ss_pred             ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCC-----------ceEEEec--ccCCCCCcC----HHH
Confidence             9999999999999876556778999999999997765544321           1122221  100112234    677


Q ss_pred             HHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC-CCcccccccCCCCC---
Q 013235          243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGFEAHGVVPD---  318 (447)
Q Consensus       243 le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G-~~~~~~~~~gv~pD---  318 (447)
                      +++.+....+ +.+++++...++++|.+ .+.+++++|.++|++||+++|+||+|++|++.| ...+.+..++..+|   
T Consensus       162 l~~~l~~~~~-~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i  239 (396)
T 2q7w_A          162 LINSLNEAQA-GDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI  239 (396)
T ss_dssp             HHHHHTTCCT-TCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred             HHHHHHhCCC-CCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence            8877764322 34556655556666765 478899999999999999999999999997753 11233332322233   


Q ss_pred             -EEEeecccc-CCcccccccc---CHH----HHHhhcCCcccccCC-CChHHHHHHHHHHHHH------hh--hhHHHHH
Q 013235          319 -IVTMAKGIG-NGIPLGAVVT---TPE----IAEVLTRRNYFNTFG-GNPVCTAAGHAVLKVI------QK--DKLQNNA  380 (447)
Q Consensus       319 -ivt~sK~lg-~G~pigav~~---~~~----i~~~l~~~~~~~T~~-~np~a~aaala~L~~i------~~--~~l~~~~  380 (447)
                       +.+++|.+| +|+|+|++++   +++    +++.+... +..+++ .|+++++++.++|+..      ++  +++.+++
T Consensus       240 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~  318 (396)
T 2q7w_A          240 VASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAA-IRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI  318 (396)
T ss_dssp             EEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred             EEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHH-HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence             337899999 7999999986   563    44444321 223454 4899999998888643      01  1233445


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.+++.+.|+++....+.....+..|+++++++        +    ...+.+.|.++||++.+
T Consensus       319 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~  371 (396)
T 2q7w_A          319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--------T----KEQVLRLREEFGVYAVA  371 (396)
T ss_dssp             HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT
T ss_pred             HHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--------C----HHHHHHHHHhcCeeecC
Confidence            55556666655554100001111234466666544        1    13455667788999865

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.93  E-value=1.7e-25  Score=222.83  Aligned_cols=290  Identities=13%  Similarity=0.088  Sum_probs=200.6

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      .+.+|||.+|..  ++|+. |.+  +    +.    ....|+++...+++++|+++++.+.++|++++|++||++.+++.
T Consensus        28 ~~~~i~l~~~~~--~~~~~-~~v--a----~~----~~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~   94 (356)
T 1fg7_A           28 GNGDVWLNANEY--PTAVE-FQL--T----QQ----TLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA   94 (356)
T ss_dssp             TTCSEECSSCCC--SSCCC-CCC--C----CC----CTTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred             CCceEEeeCCCC--CCCCC-HhH--h----hh----hhccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence            357899999875  77874 666  2    11    12346655578899999999876667899999999999999986


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      ... .|+++|++.+++||+....+...+             ...+..|..  ..|+.|    .+++++.+.     ++.+
T Consensus        95 ~~~-~g~d~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~--~~~~~d----~~~l~~~i~-----~~~~  149 (356)
T 1fg7_A           95 FCE-PGKDAILYCPPTYGMYSVSAETIG-------------VECRTVPTL--DNWQLD----LQGISDKLD-----GVKV  149 (356)
T ss_dssp             HCC-TTTCEEEECSSSCTHHHHHHHHHT-------------CEEEECCCC--TTSCCC----HHHHHTSCT-----TEEE
T ss_pred             HhC-CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEeeCC--CCCCCC----HHHHHHHhc-----CCCE
Confidence            642 233789999999999776554332             222222221  123344    455554442     4566


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEEEeecccc-CCcccccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPLGAV  335 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pigav  335 (447)
                      +++...++++|.+. +.+.+++|.++|+ +|+++|+||+|++|++.. .++.. +.++....+.+++|.+| +|+|+|++
T Consensus       150 v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  226 (356)
T 1fg7_A          150 VYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCGFT  226 (356)
T ss_dssp             EEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG-CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEE
T ss_pred             EEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCC-cHHHHHhhCCCEEEEecchHhhcCchhhhEEE
Confidence            76666678888765 6788999999999 999999999999987433 33333 33333344558999998 89999999


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCe-eeEeecceeE
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERLTALKDKYGII-GDVRGRGFLL  411 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i-~~vrg~Gl~~  411 (447)
                      ++++++++.+..  ...+|+.|+++++++.++|+...   -++..+++++..+++.+.|++    ++.+ ...++.|+++
T Consensus       227 ~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~  300 (356)
T 1fg7_A          227 LANEEVINLLMK--VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYI  300 (356)
T ss_dssp             EECHHHHHHHHH--HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEE
T ss_pred             EeCHHHHHHHHH--hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeEE
Confidence            999999888764  23567899999999998886432   122334444555555555544    4432 3346778999


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++. +          ..++.+.|.++||++++
T Consensus       301 ~~~~~-~----------~~~l~~~L~~~gI~v~~  323 (356)
T 1fg7_A          301 LARFK-A----------SSAVFKSLWDQGIILRD  323 (356)
T ss_dssp             EEEET-T----------HHHHHHHHHHTTEECEE
T ss_pred             EEECC-C----------HHHHHHHHHHCCEEEEE
Confidence            88873 1          35688899999999976

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.93  E-value=4e-26  Score=229.82  Aligned_cols=316  Identities=13%  Similarity=0.052  Sum_probs=206.1

Q ss_pred             CCCeEEEecCCcccccCC--CCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC-C--CCceEEE--cCCHH
Q 013235           97 NGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP-G--NLKVVFF--TNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~-~--~~~~v~~--~~sGs  168 (447)
                      .|..+|||..|....+.+  +.+|.|.+|+.++++.. . ...|. .....+++++|++++. .  ..++|+|  ++||+
T Consensus        24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~  101 (394)
T 2ay1_A           24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE-T-TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGT  101 (394)
T ss_dssp             CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred             CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCc-c-cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCch
Confidence            356789999988655555  67899999999887652 1 12232 2345677777777652 2  3578988  99999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|++.++++++.+.++++|++.+++||+....+...+.           .+..++..  ....++.|    .+++++.+.
T Consensus       102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l~  164 (394)
T 2ay1_A          102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-----------PVQTYRYF--DAETRGVD----FEGMKADLA  164 (394)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-----------CEEEEECE--ETTTTEEC----HHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC-----------ceEEEecc--cccCCccC----HHHHHHHHH
Confidence            99999999877655678899999999997765544321           12222221  00112234    567887776


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccccccc-CCCCCEE---Eee
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH-GVVPDIV---TMA  323 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~-gv~pDiv---t~s  323 (447)
                      .. +.+.+++++...++++|.+. +.+++++|.++|++||+++|+||+|++|+++|. ..+.+..+ ...+|++   ++|
T Consensus       165 ~~-~~~~~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  242 (394)
T 2ay1_A          165 AA-KKGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS  242 (394)
T ss_dssp             TC-CTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred             hC-CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence            43 22456777777788888754 788999999999999999999999999987531 12222222 1234543   689


Q ss_pred             cccc-CCcccccccc---CHHHHHhhcCC---cccccCC-CChHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHH
Q 013235          324 KGIG-NGIPLGAVVT---TPEIAEVLTRR---NYFNTFG-GNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSYL  387 (447)
Q Consensus       324 K~lg-~G~pigav~~---~~~i~~~l~~~---~~~~T~~-~np~a~aaala~L~~i~--------~~~l~~~~~~~g~~l  387 (447)
                      |.+| +|+|+|++++   ++++++.+...   .+..+|+ .|+++++++.++|+..+        -+++.+++++..+++
T Consensus       243 K~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  322 (394)
T 2ay1_A          243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQL  322 (394)
T ss_dssp             TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 8999999998   67665433221   1224454 48999999999887541        123556666667777


Q ss_pred             HHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+.|+++....++....+..|+++++++        +    ...+.+.|.++||++.+
T Consensus       323 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~--------~----~~~~~~~l~~~gi~v~~  368 (394)
T 2ay1_A          323 AGELRDLSGSDRFGFVAEHRGMFSRLGA--------T----PEQVKRIKEEFGIYMVG  368 (394)
T ss_dssp             HHHHHHHHTSSTTTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT
T ss_pred             HHHHHhcCCCCCeeEEcCCceEEEeeCC--------C----HHHHHHHHHhCCEEecC
Confidence            7777665311011111123477777654        1    13466667789999865

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.93  E-value=5.6e-25  Score=222.70  Aligned_cols=309  Identities=14%  Similarity=0.053  Sum_probs=206.4

Q ss_pred             cCCCeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC------CCCCceEEEcCCH
Q 013235           96 ENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLKVVFFTNSG  167 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~------~~~~~~v~~~~sG  167 (447)
                      .+|+.+|||..|..+. .++ .+|++.+++.++++...   ..|.. ....++.+.|++++      +.+.++|++++||
T Consensus        35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~  110 (406)
T 1xi9_A           35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGH---NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV  110 (406)
T ss_dssp             HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred             HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCC---CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCCh
Confidence            4688999999887643 556 57999999999987642   12222 12334445554443      3456789999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|++.+++.+.  .+++.|++.+++||+....+...+.           .+..++..  ....|..|    .++|++.+
T Consensus       111 ~~al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l  171 (406)
T 1xi9_A          111 TEALQLIFGALL--DPGDEILVPGPSYPPYTGLVKFYGG-----------KPVEYRTI--EEEDWQPD----IDDIRKKI  171 (406)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHTTC-----------EEEEEEEE--GGGTSEEC----HHHHHHHC
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCCccHHHHHHHcCC-----------EEEEeecC--CCcCCcCC----HHHHHHhh
Confidence            999999998763  3567899999999987655432211           11222211  00112223    56777766


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCC--CEE--Eee
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP--DIV--TMA  323 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~p--Div--t~s  323 (447)
                      ..    ++++|+++..++++|.+. +++++++|.++|++||+++|+||+|++|.+.+ ....+..++ .+  |++  +++
T Consensus       172 ~~----~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-~~~~~i~~~s~s  244 (406)
T 1xi9_A          172 TD----RTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-KDVPVIVMNGLS  244 (406)
T ss_dssp             CT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-SSSCEEEEEEST
T ss_pred             Cc----CceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-CCceEEEEeccc
Confidence            42    577888888888888775 67899999999999999999999999987744 344444443 22  344  578


Q ss_pred             cccc-CCccccccc--cCH----HHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHH
Q 013235          324 KGIG-NGIPLGAVV--TTP----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       324 K~lg-~G~pigav~--~~~----~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      |.++ +|+|+|+++  +++    ++++.+....... ++.|+++++++.++|+...+  +++.++++++.+++.+.|++ 
T Consensus       245 K~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-  322 (406)
T 1xi9_A          245 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-  322 (406)
T ss_dssp             TTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             cccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            9998 799999999  898    9988776433223 78899999999999963322  34456666666666666654 


Q ss_pred             HHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          395 KDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       395 ~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                         ++.+..+++. |+++++++.....   .   ...++.+.|+ ++||++.+
T Consensus       323 ---~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~~~l~~~~gi~v~~  366 (406)
T 1xi9_A          323 ---IPGISTTKPQGAFYIFPKIEVGPW---K---NDKEFVLDVLHNAHVLFVH  366 (406)
T ss_dssp             ---STTEECCCCCBSSEECCEECSCSC---S---SHHHHHHHHHHHHCEECEE
T ss_pred             ---CCCCeeecCCeeEEEEEecCccCC---C---CHHHHHHHHHHhCCEEEeC
Confidence               3333333333 5666667742100   0   1356888887 88998864

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.93  E-value=1.1e-24  Score=218.21  Aligned_cols=303  Identities=12%  Similarity=0.034  Sum_probs=207.8

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc----cccc--hHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV----LYLN--HAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~----~~~~--~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      ++..|+|..      ..|+.+|.|.+|+.+++....+...    .|+.  +...+++++|+++++.+.+++++++||++|
T Consensus        15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   88 (390)
T 1elu_A           15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   88 (390)
T ss_dssp             TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence            455666643      3578889999999999876532111    3443  677899999999997666789999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      ++.+++.++ ..++++|++..++||+.......+....       ...+..++.+  ....+..|    .++|++.+.  
T Consensus        89 ~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~-------g~~~~~v~~~--~~~~~~~d----~~~l~~~i~--  152 (390)
T 1elu_A           89 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAARF-------GITYRFFPVA--ATLNQGDA----AAVLANHLG--  152 (390)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHHH-------CCEEEEECCG--GGSSSSCH----HHHHHTTCC--
T ss_pred             HHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHHh-------CcEEEEEcCC--CCCCccch----HHHHHHhcC--
Confidence            999999774 3456899999999998764321110000       0012223221  10112223    455655543  


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH----HhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eec
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK----KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAK  324 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK  324 (447)
                        +++++|+++++++++|.+.+    +++|.++|+    +||+++|+||+|+ +|...     .+.....+|+++  ++|
T Consensus       153 --~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~d~~~~s~~K  220 (390)
T 1elu_A          153 --PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP-----LDFSRLEVDYYAFTGHK  220 (390)
T ss_dssp             --TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC-----CCTTTSCCSEEEEESSS
T ss_pred             --CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC-----CChhhcCCCEEEccccc
Confidence              36889999999999998886    999999999    9999999999996 55432     122234578887  889


Q ss_pred             cccCCccccccccCHHHHHhhcCCc----------------------ccccCCCChHHHHHHHHHHHHHhhhh----HHH
Q 013235          325 GIGNGIPLGAVVTTPEIAEVLTRRN----------------------YFNTFGGNPVCTAAGHAVLKVIQKDK----LQN  378 (447)
Q Consensus       325 ~lg~G~pigav~~~~~i~~~l~~~~----------------------~~~T~~~np~a~aaala~L~~i~~~~----l~~  378 (447)
                      .+.+|.++|++++++++++.+....                      ...++..|+++++++.++|+.+++++    +.+
T Consensus       221 ~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~  300 (390)
T 1elu_A          221 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ  300 (390)
T ss_dssp             TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888999999999887765421                      12234567888888888888876544    456


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCeeeE---eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          379 NAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       379 ~~~~~g~~l~~~L~~l~~~~~~i~~v---rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+++.+++.+.|+++    +.+.-+   ++.|.|+.+++.++.        ...++.+.|.++||++.+
T Consensus       301 ~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~  358 (390)
T 1elu_A          301 AICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRT  358 (390)
T ss_dssp             HHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCCC--------CHHHHHHHHHHCCEEEEe
Confidence            6666667777766653    222222   567888888873210        135688899999999875

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.93  E-value=7.1e-26  Score=231.04  Aligned_cols=311  Identities=13%  Similarity=0.066  Sum_probs=204.4

Q ss_pred             CeEEEecCCcccccCCCCCHHH--HHHHHHHHHhcccccccccch-HHHHHHHHHHHhC-----CCCCce---EEEcCCH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYV--VDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM-----PGNLKV---VFFTNSG  167 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v--~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~-----~~~~~~---v~~~~sG  167 (447)
                      +.+|||..|... .+|+ +|.+  .+++.++++..  ....|... ...++++.|++++     +.+.++   |++++||
T Consensus        47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~  122 (430)
T 2x5f_A           47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL  122 (430)
T ss_dssp             TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred             CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence            568999988864 5674 6767  77777666441  11234332 3567777777766     555677   9999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhh-ccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~-~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      ++|++.+++...  .+++.|++.+++||+....+.. .             |...+..|..... |+.|    .+++++.
T Consensus       123 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~-------------g~~~~~~~~~~~~-~~~d----~~~l~~~  182 (430)
T 2x5f_A          123 THGLSLVGDLFV--NQDDTILLPEHNWGNYKLVFNTRN-------------GANLQTYPIFDKD-GHYT----TDSLVEA  182 (430)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCTHHHHHHTTTT-------------CCEEEEECCBCTT-SCBC----SHHHHHH
T ss_pred             hHHHHHHHHHHh--CCCCEEEEcCCcCccHHHHHHHhc-------------CCeEEEEeccCcc-CCcC----HHHHHHH
Confidence            999999998663  2458899999999987654433 2             2222222221111 3334    4677777


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-----hCCEEEEeccccCccccCCCcccc--cccCCCCC-
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-----AGGLCIADEVQAGFARTGSHFWGF--EAHGVVPD-  318 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tGfgr~G~~~~~~--~~~gv~pD-  318 (447)
                      +....++..+.++++| ++++|.+ .+.+++++|.++|++     ||+++|+||+|++|.+.|..+..+  ...+..++ 
T Consensus       183 l~~~~~~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (430)
T 2x5f_A          183 LQSYNKDKVIMILNYP-NNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNA  260 (430)
T ss_dssp             HHHCCSSEEEEEECSS-CTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTT
T ss_pred             HHhcCCCCEEEEEcCC-CCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCc
Confidence            7643222334556666 7778865 478899999999999     999999999999998776322222  22233455 


Q ss_pred             -----EEEeecccc-CCcccccccc---CHHHHHhhcCCccc----ccCCCChHHHHHHHHHHH-HH---hh-hhHHHHH
Q 013235          319 -----IVTMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNYF----NTFGGNPVCTAAGHAVLK-VI---QK-DKLQNNA  380 (447)
Q Consensus       319 -----ivt~sK~lg-~G~pigav~~---~~~i~~~l~~~~~~----~T~~~np~a~aaala~L~-~i---~~-~~l~~~~  380 (447)
                           +.+++|.++ +|+|+|++++   ++++++.+......    .+++.|+++++++.++|+ ..   +. ++..+++
T Consensus       261 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  340 (430)
T 2x5f_A          261 ILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTL  340 (430)
T ss_dssp             EEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence                 346899998 7999999999   99998887653333    678899999999999987 32   11 1134444


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      ++..+++.+.|++...+.+ +..++. .|+++++++. ..        ...++.+.|++ +||++.+
T Consensus       341 ~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~~--------~~~~~~~~l~~~~gi~v~~  397 (430)
T 2x5f_A          341 KERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-DV--------DPEALRKHLIDKYSIGVIA  397 (430)
T ss_dssp             HHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-SS--------CHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-CC--------CHHHHHHHHHHhCCEEEec
Confidence            5555555555442211222 322333 3577888884 10        13568889988 8999875

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.92  E-value=2.3e-24  Score=217.21  Aligned_cols=304  Identities=15%  Similarity=0.104  Sum_probs=202.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc-ccccc-----chHHHHHHHHHHHhCC--CCCceEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLYL-----NHAIADFAEALASKMP--GNLKVVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-~~~~~-----~~~~~elae~L~~~~~--~~~~~v~~~~sGs  168 (447)
                      +|+.+|||.+|..  .+ ..+|.|.+|+.++++..... ...|.     .+...++++.+.+.++  .+.++|+|++||+
T Consensus        33 ~~~~~i~l~~~~~--~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~  109 (398)
T 3ele_A           33 GKENVYDFSIGNP--SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA  109 (398)
T ss_dssp             CGGGCEECCSCCC--CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred             CCCCeEEeecCCC--CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence            3568999998743  23 37899999999998773211 11221     2334445555544433  4567899999999


Q ss_pred             HHHHHHHHHHHhhcCC-CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGC-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~-~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      +|++.+++....  ++ +.|++.+++||+....+...             |...+..|... ..|+.|    .++|++.+
T Consensus       110 ~al~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~l  169 (398)
T 3ele_A          110 ASLSICFRALTS--DAYDEFITIAPYFPEYKVFVNAA-------------GARLVEVPADT-EHFQID----FDALEERI  169 (398)
T ss_dssp             HHHHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCT-TTSSCC----HHHHHHTC
T ss_pred             HHHHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCC-cCCcCC----HHHHHHHh
Confidence            999999987632  44 89999999999876554332             22222222211 123334    56677665


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH------hCCEEEEeccccCccccCCCcc-cccccCCCCCEE
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------AGGLCIADEVQAGFARTGSHFW-GFEAHGVVPDIV  320 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tGfgr~G~~~~-~~~~~gv~pDiv  320 (447)
                      .   + ++.+|++...++++|.+. +.+.+++|.++|++      ||+++|+||+|++|.+.|.... ..+.++....+.
T Consensus       170 ~---~-~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~  244 (398)
T 3ele_A          170 N---A-HTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCY  244 (398)
T ss_dssp             C---T-TEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEE
T ss_pred             C---c-CCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEE
Confidence            3   2 567777766678888766 66779999999999      9999999999999988773221 123344444555


Q ss_pred             Eeecccc-CCccccccccCHHHH------HhhcCC-cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013235          321 TMAKGIG-NGIPLGAVVTTPEIA------EVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       321 t~sK~lg-~G~pigav~~~~~i~------~~l~~~-~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~  392 (447)
                      +++|.++ +|+|+|+++++++++      +.+... ....+++.++++++++.+.|+   +.+..+++++..+++.+.|+
T Consensus       245 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~  321 (398)
T 3ele_A          245 SYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLT  321 (398)
T ss_dssp             ESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHH
T ss_pred             ehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence            7999999 899999999998743      222211 122456677788877766654   44466788888888988888


Q ss_pred             HHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          393 ALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       393 ~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++  ..   .-+.. .|+++++++...         ...++.+.|.++||++.+
T Consensus       322 ~~--g~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~  361 (398)
T 3ele_A          322 RI--GY---HCFKPDGAFYMFVKALED---------DSNAFCEKAKEEDVLIVA  361 (398)
T ss_dssp             HH--TC---CEECCSBSSEEEEECSSS---------CHHHHHHHHHTTTEECEE
T ss_pred             Hc--CC---eecCCCeeEEEEEEcCCC---------CHHHHHHHHHHCCEEEeC
Confidence            76  22   22233 356577776321         145688889999999874

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.92  E-value=2.1e-24  Score=218.85  Aligned_cols=306  Identities=14%  Similarity=0.079  Sum_probs=202.9

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN  171 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~  171 (447)
                      .+|+.+|||.+|..  .++ .+|.+.+|+ ++++...  +....+..+...++++.+.+..+  .+.+++++++||++|+
T Consensus        40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~  115 (409)
T 2gb3_A           40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI  115 (409)
T ss_dssp             HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred             hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence            46889999998876  456 578999999 8886531  11111122333444444443322  3457899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      +.+++.+.  .++++|++.+++||+....+... +.          .+..++...  ...|..     .++|++.+.   
T Consensus       116 ~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~--~~~~~~-----~~~l~~~l~---  172 (409)
T 2gb3_A          116 LFSFAVIA--NPGDEILVLEPFYANYNAFAKIA-GV----------KLIPVTRRM--EEGFAI-----PQNLESFIN---  172 (409)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTHHHHHHHHH-TC----------EEEEEECCG--GGTSCC-----CTTGGGGCC---
T ss_pred             HHHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEeccCC--CCCCcc-----HHHHHHhhC---
Confidence            99999763  35688999999999876544322 11          122222210  001110     133444442   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEE--Eeecccc-
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAKGIG-  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDiv--t~sK~lg-  327 (447)
                       .++++|+++..++++|.+. |++++++|.++|++||+++|+||+|+++.++| ..+.. ..++ ..|++  +++|.++ 
T Consensus       173 -~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~-~~~~~~~~i~~~s~sK~~g~  248 (409)
T 2gb3_A          173 -ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA-LSIESDKVVVIDSVSKKFSA  248 (409)
T ss_dssp             -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred             -cCCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc-cccCCCCEEEEecchhccCC
Confidence             2677888888888888875 67899999999999999999999999998777 44443 1233 34766  6799998 


Q ss_pred             CCccccccccCH-HHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          328 NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       328 ~G~pigav~~~~-~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                      +|+|+|++++++ ++++.+.......+ +.|+++++++.++|+..+  -+++.++++++.+++.+.|+++  .+..+ ..
T Consensus       249 ~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~  324 (409)
T 2gb3_A          249 CGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH--GLKRF-TK  324 (409)
T ss_dssp             GGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCB-CC
T ss_pred             ccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc--Cceee-eC
Confidence            799999999998 89887765433444 889999999988885321  1234566667777777777665  33321 12


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC------Cceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI------CALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~------Gvlv~~  445 (447)
                      +..|+++++++. .     .   ...++.+.|+++      ||++.+
T Consensus       325 ~~~~~~~~~~~~-~-----~---~~~~l~~~l~~~~~~~~~gi~v~~  362 (409)
T 2gb3_A          325 PSGAFYITAELP-V-----E---DAEEFARWMLTDFNMDGETTMVAP  362 (409)
T ss_dssp             CSBSSEEEEECS-S-----S---CHHHHHHHHHHSCCBTTEEEECEE
T ss_pred             CCeeEEEEEEeC-C-----C---CHHHHHHHHHhccccccCcEEEeC
Confidence            344777777763 1     0   135688889887      999864

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.92  E-value=3e-24  Score=213.84  Aligned_cols=297  Identities=12%  Similarity=0.089  Sum_probs=201.9

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      +.+|||.+|..  +++ .+|+|.+|+.++++..    ..|+++...+++++|+++++.+.++|++++||++|++.+++..
T Consensus        30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l  102 (365)
T 3get_A           30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKA----HLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK  102 (365)
T ss_dssp             SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGT----TSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             CceEEecCCCC--CCC-CCHHHHHHHHHHHHhh----ccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence            67999998876  456 7899999999988753    2344444468999999998766788999999999999999865


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                      .  .++++|++..++|++....+...             |...+..|. ..    .+. --.+++++.+.    .++.+|
T Consensus       103 ~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~-~~----~~~-~d~~~l~~~l~----~~~~~v  157 (365)
T 3get_A          103 L--NSKNAFLQAGVTFAMYEIYAKQC-------------GAKCYKTQS-IT----HNL-DEFKKLYETHK----DEIKLI  157 (365)
T ss_dssp             C--CTTCEEEECSSCCTHHHHHHHHH-------------TCEEEECSS-SS----CCH-HHHHHHHHHTT----TTEEEE
T ss_pred             h--CCCCEEEEeCCChHHHHHHHHHc-------------CCEEEEEec-CC----CCC-CCHHHHHHHhC----CCCCEE
Confidence            3  35688999999998765544332             222222222 00    111 12566666664    367777


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc--cCCCcc-ccc---ccCCCCCEEEeecccc-CCcc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFW-GFE---AHGVVPDIVTMAKGIG-NGIP  331 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr--~G~~~~-~~~---~~gv~pDivt~sK~lg-~G~p  331 (447)
                      +++..++++|.+. +.+.+++|.++| ++|+++|+||+|++|..  .|.... ...   .++....+.+++|.++ +|++
T Consensus       158 ~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  235 (365)
T 3get_A          158 FLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLR  235 (365)
T ss_dssp             EEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTC
T ss_pred             EEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchh
Confidence            7776677788776 455566666666 67999999999998762  221111 112   2233334447899998 7999


Q ss_pred             ccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235          332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (447)
Q Consensus       332 igav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~  410 (447)
                      +|++++++++++.+...  ..+|+.|+++++++.++|+..+ -++..++.+++.+++.+.|++    ++ +..+++.|.+
T Consensus       236 ~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~~~  308 (365)
T 3get_A          236 IGYGIANANIISAFYKL--RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKK----HN-IKIIDSYTNF  308 (365)
T ss_dssp             CEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CEECCCSSSE
T ss_pred             eEEEEcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeE
Confidence            99999999999887642  2457799999999999886321 012334444444455554444    33 3345778888


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++++...         ...++.+.|+++||++.+
T Consensus       309 ~~~~~~~~---------~~~~~~~~l~~~gi~v~~  334 (365)
T 3get_A          309 ITYFFDEK---------NSTDLSEKLLKKGIIIRN  334 (365)
T ss_dssp             EEEECSSS---------CHHHHHHHHHTTTEECEE
T ss_pred             EEEECCCC---------CHHHHHHHHHHCCEEEEE
Confidence            88877321         146788999999999864

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.92  E-value=3e-24  Score=216.99  Aligned_cols=303  Identities=15%  Similarity=0.072  Sum_probs=204.1

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccc-chHHHHHHHHHHHhC--C-CCCceEEEcCCHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYL-NHAIADFAEALASKM--P-GNLKVVFFTNSGTEAN  171 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~--~~~~~-~~~~~elae~L~~~~--~-~~~~~v~~~~sGseA~  171 (447)
                      |+.+|||.+|..  .++ .+|.|.+|+.++++...+.  ...|. .....+|+++|++++  + ...++|++++|+++++
T Consensus        32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al  108 (400)
T 3asa_A           32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL  108 (400)
T ss_dssp             TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred             CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence            678999988875  344 6899999999998765321  12343 345678999999984  4 3567899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      +.++++.   +++++|++.+++||+........ +..         .+..++..  ..+.+..|       +++.     
T Consensus       109 ~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~~-g~~---------~~~~~~~~--~~~~~~~~-------l~~~-----  161 (400)
T 3asa_A          109 FRLLSFF---GPNQTVAIQDPSYPAYLDIARLT-GAK---------EIIALPCL--QENAFFPE-------FPED-----  161 (400)
T ss_dssp             HHHHHHH---CSSCEEEEEESCCHHHHHHHHHT-TCS---------EEEEEECC--GGGTTCCC-------CCTT-----
T ss_pred             HHHHHHc---CCCCEEEECCCCcHHHHHHHHHc-CCc---------ceEecccc--hhcCcccC-------hhhc-----
Confidence            9876543   45688999999999876543322 111         02222221  11111111       1111     


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC----EEEeecccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAKGIG  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD----ivt~sK~lg  327 (447)
                       .++++|+++..++++|.+. +.+.+++|.++|+++|+++|+||+|++|++.|........++..+|    +.++||.+|
T Consensus       162 -~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g  239 (400)
T 3asa_A          162 -THIDILCLCSPNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG  239 (400)
T ss_dssp             -CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred             -cCccEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence             2456777766678888775 7889999999999999999999999999876621222222222233    558999998


Q ss_pred             -CCccccccccCHHH-------HHhhcCCcccccC-CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235          328 -NGIPLGAVVTTPEI-------AEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY  398 (447)
Q Consensus       328 -~G~pigav~~~~~i-------~~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~  398 (447)
                       +|+|+|++++++++       ++.+....+..+| +.|+++++++.++|+...-+++.++++++.++|.+.|+++    
T Consensus       240 ~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----  315 (400)
T 3asa_A          240 FAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----  315 (400)
T ss_dssp             TTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred             CcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence             89999999999887       5544322233455 5899999999998876434467788888888888888764    


Q ss_pred             CCeeeEee-cceeEEEE-EeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          399 GIIGDVRG-RGFLLGVE-FVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       399 ~~i~~vrg-~Gl~~gie-l~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      + +.-+.+ .|++++++ +.+..    .    ..++.+.|++ +||++.+
T Consensus       316 g-~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~~gv~v~~  356 (400)
T 3asa_A          316 G-FEVFGGEHAPYLWVKPTQANI----S----DRDLFDFFLREYHIAITP  356 (400)
T ss_dssp             T-CEEEECSSSSEEEEECCCTTC----C----TTTHHHHHHHHHSEECEE
T ss_pred             C-CeeeCCCCceEEEEeccCCCC----C----HHHHHHHHHHhCCEEEeC
Confidence            2 222333 47888888 52210    0    1347777775 4999864

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.92  E-value=2.6e-24  Score=218.24  Aligned_cols=314  Identities=12%  Similarity=0.052  Sum_probs=197.3

Q ss_pred             CeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC------------CCCceEEEc
Q 013235           99 RRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP------------GNLKVVFFT  164 (447)
Q Consensus        99 ~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~------------~~~~~v~~~  164 (447)
                      +.+|||..|.... +-.+.+|.|.+|+.++++...  ...|. .....++++.|++++.            ...++|+++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~  110 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC  110 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc--cCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence            5689998887542 113478999999999987632  12232 2234455555555543            346789999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHH
Q 013235          165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (447)
Q Consensus       165 ~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (447)
                      +||++|++.+++...  .++++|++.+++||+....+...             |...+..|......|..|    .++|+
T Consensus       111 ~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~  171 (416)
T 1bw0_A          111 SGGSHGILMAITAIC--DAGDYALVPQPGFPHYETVCKAY-------------GIGMHFYNCRPENDWEAD----LDEIR  171 (416)
T ss_dssp             SHHHHHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEEEEGGGTTEEC----HHHHH
T ss_pred             CChHHHHHHHHHHhC--CCCCEEEEcCCCcHhHHHHHHHc-------------CcEEEEeecCcccCCCCC----HHHHH
Confidence            999999999998763  25688999999999876544322             121121111111112234    56677


Q ss_pred             HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC----CcccccccCCCCCE-
Q 013235          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS----HFWGFEAHGVVPDI-  319 (447)
Q Consensus       245 ~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~----~~~~~~~~gv~pDi-  319 (447)
                      +.+.   ++..+.++++| ++++|.+. +++++++|.++|++||+++|+||+|++|.++|.    .+..+..++..+++ 
T Consensus       172 ~~l~---~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i  246 (416)
T 1bw0_A          172 RLKD---DKTKLLIVTNP-SNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRV  246 (416)
T ss_dssp             HHCC---TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEE
T ss_pred             HHhc---cCCeEEEEeCC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEE
Confidence            7664   22345566666 66777764 788999999999999999999999999877763    22222222222233 


Q ss_pred             --EEeecccc-CCccccccccCHH--HHHhhcC---CcccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHH
Q 013235          320 --VTMAKGIG-NGIPLGAVVTTPE--IAEVLTR---RNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLK  388 (447)
Q Consensus       320 --vt~sK~lg-~G~pigav~~~~~--i~~~l~~---~~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~  388 (447)
                        .+++|.++ +|+|+|+++++++  +++.+..   ..+..+++.|+++++++.++|+.+.++   ++.++++++.+++.
T Consensus       247 ~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  326 (416)
T 1bw0_A          247 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLY  326 (416)
T ss_dssp             EEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence              36899986 6899999998663  4333321   112257889999999999999743222   33445555555555


Q ss_pred             HHHHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          389 ERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       389 ~~L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +.|++    ++.+..++ ..|+++++++....   .+......++++.|+ ++||++.+
T Consensus       327 ~~L~~----~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~~  378 (416)
T 1bw0_A          327 NHIGE----CIGLAPTMPRGAMYLMSRIDLEK---YRDIKTDVEFFEKLLEEENVQVLP  378 (416)
T ss_dssp             HHHTT----STTEEECCCCBTTEEEEEECGGG---BSSCCSHHHHHHHHHHHHCEECEE
T ss_pred             HHHHh----CCCCcccCCCeeEEEEEeCCHHH---cCCCCCHHHHHHHHHHHCCEEEec
Confidence            55543    33343333 34788888874210   000011356778875 78999875

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=3.7e-24  Score=213.19  Aligned_cols=297  Identities=15%  Similarity=0.081  Sum_probs=204.6

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-------cccccccchHHHHHHHH-HHHhCCCCCceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-------HSTVLYLNHAIADFAEA-LASKMPGNLKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-------~~~~~~~~~~~~elae~-L~~~~~~~~~~v~~~~sGse  169 (447)
                      +-.|||+.+     +.++.+|++.+|+.+++....       +....++.+...+++++ |+++++.+  .++|++||++
T Consensus         8 ~~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~   80 (371)
T 2e7j_A            8 DFINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGARE   80 (371)
T ss_dssp             CCEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHH
T ss_pred             CcEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHH
Confidence            346777643     345688999999999887642       11223356677899999 99999764  8999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |++.+++.+.  .++++|++.+++||+........             |...+..|.+....+.-|    .++|++.+.+
T Consensus        81 a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~~  141 (371)
T 2e7j_A           81 AKFAVMHSLA--KKDAWVVMDENCHYSSYVAAERA-------------GLNIALVPKTDYPDYAIT----PENFAQTIEE  141 (371)
T ss_dssp             HHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHT-------------TCEEEEECCCCTTTCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCEEEEccCcchHHHHHHHHc-------------CCeEEEeecccCCCCCcC----HHHHHHHHHh
Confidence            9999999773  36689999999999877653221             222222221011112234    5677777764


Q ss_pred             cCC-CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccc
Q 013235          250 GTS-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGI  326 (447)
Q Consensus       250 ~~~-~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~l  326 (447)
                      ... +++++|++++.++++|.+.+    +++|.++|++||+++|+||+|+.+ ..+   +....++  +|+++  ++|.+
T Consensus       142 ~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~--~di~~~s~sK~~  211 (371)
T 2e7j_A          142 TKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP---VSLKEIG--ADFIVGSGHKSM  211 (371)
T ss_dssp             HTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC---CCHHHHT--CSEEEEEHHHHS
T ss_pred             hcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC---CChhhcC--CCEEEecCCcCC
Confidence            211 36788999999999999886    799999999999999999999753 322   1223333  67775  58999


Q ss_pred             cCCccccccccCHHHHHh-hcCCcc--cc-----cCCCChHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHH
Q 013235          327 GNGIPLGAVVTTPEIAEV-LTRRNY--FN-----TFGGNPVCTAAGHAVLKVIQKDKLQNNA--HVVGSYLKERLTALKD  396 (447)
Q Consensus       327 g~G~pigav~~~~~i~~~-l~~~~~--~~-----T~~~np~a~aaala~L~~i~~~~l~~~~--~~~g~~l~~~L~~l~~  396 (447)
                      ++|.++|++++++++++. +.....  ..     ++..|+.+++++.++++.+++ ++.+++  +++.+++.+.|+++  
T Consensus       212 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~--  288 (371)
T 2e7j_A          212 AASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL--  288 (371)
T ss_dssp             SCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT--
T ss_pred             CCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--
Confidence            988899999999998776 654322  22     566788888888899988766 677788  88889998888876  


Q ss_pred             hcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       397 ~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .+..+...++.|.++++++.           ...++.+.|.++||++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~  325 (371)
T 2e7j_A          289 GIKQLGDNPHNHDLMFFHAE-----------VLYEISKKAKGGRFFLY  325 (371)
T ss_dssp             TCEEESSSSCCSSEEEEECH-----------HHHHHHHHSSSGGGHHH
T ss_pred             CcEEecCCCccCceEEEECC-----------CHHHHHHHHHHCCEEEE
Confidence            33222211114778888762           24568888888998874

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.91  E-value=8.5e-23  Score=205.44  Aligned_cols=302  Identities=12%  Similarity=0.017  Sum_probs=202.2

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---ccc-c---cccchHHHHHHHHHHHhCCC-CCceEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HST-V---LYLNHAIADFAEALASKMPG-NLKVVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~-~---~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGs  168 (447)
                      +|+.+++|..+..    |+.+|.|.+|+.++++...   +.. .   ....+...+++++|+++++. +.+.++|++||+
T Consensus        20 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t   95 (406)
T 1kmj_A           20 NGLPLAYLDSAAS----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT   95 (406)
T ss_dssp             TTEECEECCTTTC----CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred             CCCceEEecCCcc----CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence            4544444433332    4689999999999998752   111 1   11356678999999999976 567899999999


Q ss_pred             HHHHHHHHHHHh--hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          169 EANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       169 eA~e~Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      +|++.+++.++.  ..++++|++.+++|||.......+....       ...+..++.+.    .+..|    .++|++.
T Consensus        96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~----~~~~d----~~~l~~~  160 (406)
T 1kmj_A           96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-------GAELRVIPLNP----DGTLQ----LETLPTL  160 (406)
T ss_dssp             HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-------TCEEEEECBCT----TSCBC----GGGHHHH
T ss_pred             HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhC-------CCEEEEEecCC----CCCcC----HHHHHHH
Confidence            999999998753  3466899999999998764322111000       00122232221    12223    4566666


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eec
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAK  324 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK  324 (447)
                      +.    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+. |...   +....  ..+|+++  ++|
T Consensus       161 l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~---~~~~~--~~~d~~~~s~~K  226 (406)
T 1kmj_A          161 FD----EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP---VDVQA--LDCDFYVFSGHK  226 (406)
T ss_dssp             CC----TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC---CCHHH--HTCSEEEEEGGG
T ss_pred             hc----cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC---Ccccc--cCCCEEEEEchh
Confidence            54    26889999999999999886    99999999999999999999974 3321   12222  3478874  889


Q ss_pred             cccCCccccccccCHHHHHhhcCCccc---------------------ccCCCChHHHHHHH-HHHHHHhhh---hHHHH
Q 013235          325 GIGNGIPLGAVVTTPEIAEVLTRRNYF---------------------NTFGGNPVCTAAGH-AVLKVIQKD---KLQNN  379 (447)
Q Consensus       325 ~lg~G~pigav~~~~~i~~~l~~~~~~---------------------~T~~~np~a~aaal-a~L~~i~~~---~l~~~  379 (447)
                      .+|. ..+|++++++++++.+......                     .+.+.+++++++++ ++|+.++++   ++.++
T Consensus       227 ~~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  305 (406)
T 1kmj_A          227 LYGP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEY  305 (406)
T ss_dssp             TTSC-TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccCC-CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            9852 2289999999999887653221                     22345677777666 788887653   45666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCeeeEee--cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          380 AHVVGSYLKERLTALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       380 ~~~~g~~l~~~L~~l~~~~~~i~~vrg--~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+++.+++.+.|+++    +.+.-+..  .|.++.+.+. +     .+   ..++.+.|.++||++.+
T Consensus       306 ~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~-~-----~~---~~~~~~~l~~~gi~v~~  360 (406)
T 1kmj_A          306 EQNLMHYALSQLESV----PDLTLYGPQNRLGVIAFNLG-K-----HH---AYDVGSFLDNYGIAVRT  360 (406)
T ss_dssp             HHHHHHHHHHHHTTS----TTEEEESCTTCCSEEEEEET-T-----CC---HHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHhcC----CCeEEecCCCcCCEEEEEEC-C-----CC---HHHHHHHHhhCCcEEEe
Confidence            777777777776653    22333333  6888888762 1     01   34678889999999864

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.91  E-value=1e-22  Score=205.90  Aligned_cols=304  Identities=13%  Similarity=0.093  Sum_probs=206.8

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---c-cccccc---chHHHHHHHHHHHhCCC-CCceEEEcCCH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---H-STVLYL---NHAIADFAEALASKMPG-NLKVVFFTNSG  167 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~-~~~~~~---~~~~~elae~L~~~~~~-~~~~v~~~~sG  167 (447)
                      .+|+.+++|..+..    ++.+|.|.+|+.++++...   | ....|.   .+...+++++|+++++. +.+++++++||
T Consensus        24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~   99 (420)
T 1t3i_A           24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA   99 (420)
T ss_dssp             ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred             cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence            36778888876655    4688999999999998742   1 112232   35678999999999976 56789999999


Q ss_pred             HHHHHHHHHHHHh--hcCCCeEEEEcCCcccCchhhh---hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHH
Q 013235          168 TEANELAIMMARL--YTGCNDIISLRNAYHGNAAGTM---GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD  242 (447)
Q Consensus       168 seA~e~Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~---~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~  242 (447)
                      ++|++.+++.++.  ..++++|++.+++||+......   ...+.          .+..++.+.    .+..|    .++
T Consensus       100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~  161 (420)
T 1t3i_A          100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA----------VLKFVQLDE----QESFD----LEH  161 (420)
T ss_dssp             HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC----------EEEEECBCT----TSSBC----HHH
T ss_pred             HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCc----------EEEEeccCC----CCCcC----HHH
Confidence            9999999998742  3456889999999998642211   11110          122233221    12234    566


Q ss_pred             HHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe
Q 013235          243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM  322 (447)
Q Consensus       243 le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~  322 (447)
                      |++.+.    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +....++  +|++++
T Consensus       162 l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~di~~~  227 (420)
T 1t3i_A          162 FKTLLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLID--CDWLVA  227 (420)
T ss_dssp             HHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHHT--CSEEEE
T ss_pred             HHHhhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc---CchhhcC--CCEEEE
Confidence            777664    26889999999999999886    9999999999999999999997 43221   1233333  799987


Q ss_pred             e--ccccCCccccccccCHHHHHhhcCCccc--------------------ccCCCChHHHHHHHH-HHHHHhh---hhH
Q 013235          323 A--KGIGNGIPLGAVVTTPEIAEVLTRRNYF--------------------NTFGGNPVCTAAGHA-VLKVIQK---DKL  376 (447)
Q Consensus       323 s--K~lg~G~pigav~~~~~i~~~l~~~~~~--------------------~T~~~np~a~aaala-~L~~i~~---~~l  376 (447)
                      |  |.++ +..+|++++++++++.+......                    .+++.+++.++++++ +|+.+++   +++
T Consensus       228 s~sK~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  306 (420)
T 1t3i_A          228 SGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI  306 (420)
T ss_dssp             EGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ehhhhcC-CCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence            7  9655 33489999999999887653211                    123567777777766 7887765   456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeeeEe---ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          377 QNNAHVVGSYLKERLTALKDKYGIIGDVR---GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       377 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vr---g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .++.+++.+++.+.|+++. .+..+...+   +.|.++.+.+..      .   ...++.+.|.++||++.+.
T Consensus       307 ~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~~  369 (420)
T 1t3i_A          307 HNYEVELTHYLWQGLGQIP-QLRLYGPNPKHGDRAALASFNVAG------L---HASDVATMVDQDGIAIRSG  369 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTCT-TEEEESCCGGGSCBCSEEEEEETT------B---CHHHHHHHHHTTTEECBCS
T ss_pred             HHHHHHHHHHHHHHHHhCC-CeEEeCCCccccccCCEEEEEECC------C---CHHHHHHHHHHCCeEEeec
Confidence            6777778888887776641 111111111   248888887631      0   1346788899999998753

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=2.4e-22  Score=201.10  Aligned_cols=289  Identities=17%  Similarity=0.071  Sum_probs=193.3

Q ss_pred             CCCHHHHHHHHHHHHhcccccccc--cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-----------
Q 013235          115 HCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----------  181 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~~~~--~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~-----------  181 (447)
                      ..+|++.+|+.+++.........+  ..+...+++++|++.++.+.++++|++||++|++.+++.++..           
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~  120 (397)
T 3f9t_A           41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK  120 (397)
T ss_dssp             CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence            467999999999887642211222  2455668999999999877788999999999999999988764           


Q ss_pred             cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc
Q 013235          182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE  261 (447)
Q Consensus       182 t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E  261 (447)
                      ++++.|++.+++|++....+... +.          .+..++...    .+..|    .++|++.+...   ++++|+++
T Consensus       121 ~~gd~vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~----~~~~d----~~~l~~~i~~~---~~~~v~~~  178 (397)
T 3f9t_A          121 NEHPKIIVPITAHFSFEKGREMM-DL----------EYIYAPIKE----DYTID----EKFVKDAVEDY---DVDGIIGI  178 (397)
T ss_dssp             CSSCEEEEETTCCTHHHHHHHHH-TC----------EEEEECBCT----TSSBC----HHHHHHHHHHS---CCCEEEEE
T ss_pred             CCCeEEEECCcchhHHHHHHHHc-Cc----------eeEEEeeCC----CCcCC----HHHHHHHHhhc---CCeEEEEE
Confidence            24678999999988755443322 11          122333221    12224    67788877642   45677777


Q ss_pred             cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc--ccCC--------CcccccccCCCCCEEEeeccccCCcc
Q 013235          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGS--------HFWGFEAHGVVPDIVTMAKGIGNGIP  331 (447)
Q Consensus       262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg--r~G~--------~~~~~~~~gv~pDivt~sK~lg~G~p  331 (447)
                      +.++++|.+.+    +++|.++|++||+++|+||+|+++.  .+|.        ..+.++. ++.+.+.+++|.+++|++
T Consensus       179 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~  253 (397)
T 3f9t_A          179 AGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP  253 (397)
T ss_dssp             BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred             CCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence            77888888865    9999999999999999999998753  2331        0233334 554444567798888889


Q ss_pred             ccccccCHH-HHHhhcC-Ccc----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          332 LGAVVTTPE-IAEVLTR-RNY----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       332 igav~~~~~-i~~~l~~-~~~----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      +|+++++++ +.+.+.. ..+          .++.+.+++++.++++.+....-+++.++.+++.+++.+.|+++  .+.
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  331 (397)
T 3f9t_A          254 SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFK  331 (397)
T ss_dssp             CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred             ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCE
Confidence            999887654 4443321 111          12223356667666666654333557778888888888888876  444


Q ss_pred             CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       400 ~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+..  ..+.++.+.+.        .   ..++.+.|+++||++.+
T Consensus       332 ~~~~--~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~  364 (397)
T 3f9t_A          332 PVIE--PILNIVAIEDE--------D---YKEVCKKLRDRGIYVSV  364 (397)
T ss_dssp             BSSC--CSSSEEEEECT--------T---HHHHHHHHHHTTCBCEE
T ss_pred             EEcC--CCccEEEEEeC--------C---HHHHHHHHHhCCeEEec
Confidence            3332  34556655541        1   35788999999999864

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.90  E-value=8.1e-23  Score=205.39  Aligned_cols=295  Identities=16%  Similarity=0.083  Sum_probs=203.9

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAI  175 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~Ai  175 (447)
                      +++.|+|..+      -++.+|+|.+|+.+++..  +... ...+...+++++|++.++.+.+ +++|++||++|++.++
T Consensus        32 ~~~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~  102 (393)
T 1vjo_A           32 VPSRLLLGPG------PSNAHPSVLQAMNVSPVG--HLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI  102 (393)
T ss_dssp             CCCCEECSSS------CCCCCHHHHHHHSSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred             CccceeccCC------CCCCCHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence            4467888543      246889999998876643  1111 1245677899999998876656 8999999999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccC--chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          176 MMARLYTGCNDIISLRNAYHGN--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~--~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      +.+.  .++++|++.+++||+.  ...+... +          ..+..++.+.    .+..|    .++|++.+...   
T Consensus       103 ~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~-g----------~~~~~v~~~~----~~~~d----~~~l~~~l~~~---  158 (393)
T 1vjo_A          103 ANAV--EPGDVVLIGVAGYFGNRLVDMAGRY-G----------ADVRTISKPW----GEVFS----LEELRTALETH---  158 (393)
T ss_dssp             HHHC--CTTCEEEEEESSHHHHHHHHHHHHT-T----------CEEEEEECCT----TCCCC----HHHHHHHHHHH---
T ss_pred             Hhcc--CCCCEEEEEcCChhHHHHHHHHHHc-C----------CceEEEecCC----CCCCC----HHHHHHHHhhC---
Confidence            9773  3667899999999983  2221111 1          0122333221    12234    56777777632   


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCcc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIP  331 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~p  331 (447)
                      ++++|++++.++++|.+.+    +++|.++|+++|+++|+||+|+ ||...     .......+|+++.|  |.++++.+
T Consensus       159 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~di~~~s~sK~l~~~~~  228 (393)
T 1vjo_A          159 RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP-----IFLDAWGVDLAYSCSQKGLGCSPG  228 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC-----CCTTTTTCSEEECCSSSTTCSCSS
T ss_pred             CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC-----CcccccCccEEEEcCcccccCCCc
Confidence            4568888999999998875    8899999999999999999998 76432     12223467999866  99987669


Q ss_pred             ccccccCHHHHHhhcCC-----cc--------------cccC-CCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q 013235          332 LGAVVTTPEIAEVLTRR-----NY--------------FNTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLK  388 (447)
Q Consensus       332 igav~~~~~i~~~l~~~-----~~--------------~~T~-~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~  388 (447)
                      +|++++++++++.+...     ..              ..++ +.|+++++++.++|+.+.+   +++.++++++.+++.
T Consensus       229 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  308 (393)
T 1vjo_A          229 ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW  308 (393)
T ss_dssp             CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999998877321     11              2234 6789999999999998754   356788888889999


Q ss_pred             HHHHHHHHhcCCeeeEee--cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          389 ERLTALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       389 ~~L~~l~~~~~~i~~vrg--~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      +.|+++  .+..... .+  .+.++.+.+...        ....++.+.|+++ ||++.+
T Consensus       309 ~~L~~~--g~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~  357 (393)
T 1vjo_A          309 ERLEDI--GLSLHVE-KEYRLPTLTTVCIPDG--------VDGKAVARRLLNEHNIEVGG  357 (393)
T ss_dssp             HHHHHT--TCCBSSC-GGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHc--CCcccCC-ccccCCcEEEEEcCCC--------CCHHHHHHHHHhhCCEEEec
Confidence            888875  3433221 12  235566665211        0145788999988 999864

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.90  E-value=2.7e-23  Score=212.03  Aligned_cols=314  Identities=12%  Similarity=0.078  Sum_probs=202.5

Q ss_pred             ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--cccccc-chHHHHHHHHHHHhC----CCCCceEEEcCCH
Q 013235           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG  167 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~-~~~~~elae~L~~~~----~~~~~~v~~~~sG  167 (447)
                      +.+|+.+|||..|...  + ..+|.|.+|+.++++....  ....|. .....+|.++|++++    +...+.|+|++++
T Consensus        52 ~~~~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~  128 (432)
T 3ei9_A           52 KYPDAQVISLGIGDTT--E-PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA  128 (432)
T ss_dssp             HCTTCCCEECSSCCCC--S-CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred             cCCCCCeEEccCCCCC--C-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence            4467899999988664  2 4789999999999986532  122333 334567777777764    5566789999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc-CCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~-~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      ++++..+..+   ..+++.|++.+++||+....+........+..... ...+..++...  ...+..|       +++ 
T Consensus       129 ~~al~~l~~l---~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------l~~-  195 (432)
T 3ei9_A          129 KCDISRLQVM---FGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP--ENGFFPD-------LST-  195 (432)
T ss_dssp             HHHHHHHHHH---HCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCG--GGTTSCC-------GGG-
T ss_pred             HHHHHHHHHH---cCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCc--ccCCcCC-------hhh-
Confidence            9999875333   23678899999999998776654433221111000 01233333211  1111111       221 


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCCEEEe
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTM  322 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pDivt~  322 (447)
                          .+ ++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|++|...+ ...++..+    +....+.++
T Consensus       196 ----~~-~~~~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~  268 (432)
T 3ei9_A          196 ----VG-RTDIIFFCSPNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASF  268 (432)
T ss_dssp             ----CC-CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEES
T ss_pred             ----CC-CCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecc
Confidence                12 344555555577778765 67789999999999999999999999987665 33333222    222335579


Q ss_pred             ecccc-CCccccccccCHHH--------HHhhcCCcccccCCCChHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHH
Q 013235          323 AKGIG-NGIPLGAVVTTPEI--------AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKER  390 (447)
Q Consensus       323 sK~lg-~G~pigav~~~~~i--------~~~l~~~~~~~T~~~np~a~aaala~L~~i~---~~~l~~~~~~~g~~l~~~  390 (447)
                      ||.+| .|+|+|++++++++        .+.+.......+++.|+++++++.++|+...   -+++.++++++.+++++.
T Consensus       269 SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  348 (432)
T 3ei9_A          269 SNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDT  348 (432)
T ss_dssp             HHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 89999999999887        5655433333456688999999988875211   134556666677777777


Q ss_pred             HHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          391 LTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       391 L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      |+++    + +..+. ..|.++++++...         ...++++.|+++ ||++.+
T Consensus       349 L~~~----g-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gv~v~~  391 (432)
T 3ei9_A          349 FTSL----G-YDVYGGKNAPYVWVHFPNQ---------SSWDVFAEILEKTHVVTTP  391 (432)
T ss_dssp             HHHT----T-CCEEECSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEE
T ss_pred             HHHC----C-ceecCCCcceEEEEECCCC---------CHHHHHHHHHHHCCEEEeC
Confidence            6654    2 22233 3578888887411         134677777765 999864

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.90  E-value=1.1e-23  Score=214.24  Aligned_cols=314  Identities=14%  Similarity=0.031  Sum_probs=199.4

Q ss_pred             CeEEEecCCcccccCCCCC--HHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCCC------CCc--eEEEcCCH
Q 013235           99 RRYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNSG  167 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~--p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~~------~~~--~v~~~~sG  167 (447)
                      ..+|||..|++..+-|+.+  |.|.+|+.++++...  ...|. .....++.+.+++++..      ..+  +|++++||
T Consensus        49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~  126 (420)
T 4f4e_A           49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGL--PRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGG  126 (420)
T ss_dssp             SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred             CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCC--CCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCcc
Confidence            3579999987666677776  899999999887621  11222 23344555555555421      234  79999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|++.++++.....+++.|++.+++|++....+...+.           .+..++..+.  ..++.|    .+++++.+
T Consensus       127 t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~~~l  189 (420)
T 4f4e_A          127 TGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-----------EVVAYPYYDA--KTNGVN----FDGMLAAL  189 (420)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTC-----------CEEEEECEET--TTTEEC----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCC-----------eEEEeeeecc--ccCccC----HHHHHHHH
Confidence            999999988766566778999999999987655543321           1222322101  112224    67788887


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Ccccccc-cCCCCCEE---Ee
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEA-HGVVPDIV---TM  322 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~-~gv~pDiv---t~  322 (447)
                      .+. +.+..+++++..++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+. ..++... .+..++++   +|
T Consensus       190 ~~~-~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  267 (420)
T 4f4e_A          190 NGY-EPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSF  267 (420)
T ss_dssp             TTC-CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEEC
T ss_pred             HhC-CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeC
Confidence            644 23667888888888888765 778899999999999999999999999987642 1222221 12333333   68


Q ss_pred             ecccc-CCcccccccc---CHHHHHhhcCC----cccccCCCChHHHHHHHHHHHHHh--------hhhHHHHHHHHHHH
Q 013235          323 AKGIG-NGIPLGAVVT---TPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSY  386 (447)
Q Consensus       323 sK~lg-~G~pigav~~---~~~i~~~l~~~----~~~~T~~~np~a~aaala~L~~i~--------~~~l~~~~~~~g~~  386 (447)
                      ||.++ .|+|+|++++   ++++++.+...    ....+.+.++++++++.+.|+...        -+++.++++++.++
T Consensus       268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (420)
T 4f4e_A          268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG  347 (420)
T ss_dssp             TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 6999999753   56665543211    112344456777777776665311        12345566666667


Q ss_pred             HHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          387 LKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       387 l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++....+.....+..|+++++.+.            ...+.+.|.++||++.+
T Consensus       348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~  394 (420)
T 4f4e_A          348 LVERLKAAGIERDFSFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVS  394 (420)
T ss_dssp             HHHHHHHTTCSSCCTHHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCT
T ss_pred             HHHHHHhcCCCCCceeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecC
Confidence            777666652211221122445666665541            13456667788999865

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.90  E-value=2.4e-22  Score=200.97  Aligned_cols=296  Identities=15%  Similarity=0.095  Sum_probs=204.4

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~  177 (447)
                      +.|+|..+      -++.+|++.+|+.+++..  +... ...+...++++.|++.++.+ .+.+++++||++|++.+++.
T Consensus        20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~   90 (386)
T 2dr1_A           20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN   90 (386)
T ss_dssp             CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred             cceeecCC------CcCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence            46777643      346789999988776542  2111 12566788999999988654 46799999999999999986


Q ss_pred             HHhhcCCCeEEEEcCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ..  .++++|++.+++||+.... .....+.          .+..++.+.    .+..|    .++|++.+++.  .+++
T Consensus        91 l~--~~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~--~~~~  148 (386)
T 2dr1_A           91 GV--SKGGKVLVTIIGAFGKRYKEVVESNGR----------KAVVLEYEP----GKAVK----PEDLDDALRKN--PDVE  148 (386)
T ss_dssp             HS--CTTCEEEEEESSHHHHHHHHHHHHTTC----------EEEEEECCT----TCCCC----HHHHHHHHHHC--TTCC
T ss_pred             hh--cCCCeEEEEcCCchhHHHHHHHHHhCC----------ceEEEecCC----CCCCC----HHHHHHHHhcC--CCCc
Confidence            53  3568899999999984211 1111110          122233211    12234    56777777531  2577


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGA  334 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~piga  334 (447)
                      +|++++.++++|.+.+    +++|.++|++||+++|+||+|+. |...   +....  ..+|++++|  |.++++.++|+
T Consensus       149 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~---~~~~~--~~~di~~~s~sK~~~~~~g~G~  218 (386)
T 2dr1_A          149 AVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAM-GGAD---IKFDK--WGLDVVFSSSQKAFGVPPGLAI  218 (386)
T ss_dssp             EEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTB-TTBC---CCTTT--TTCSEEEEETTSTTCCCSSCEE
T ss_pred             EEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEccccc-cCcc---ccccc--cCCcEEEEeccccccCCCceEE
Confidence            8888999999999876    99999999999999999999973 3221   22222  246999877  99997656899


Q ss_pred             cccCHHHHHhhcCC------------------cccccCCCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHH
Q 013235          335 VVTTPEIAEVLTRR------------------NYFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       335 v~~~~~i~~~l~~~------------------~~~~T~~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~  392 (447)
                      +++++++++.+...                  ....+++.|+++++++.++|+.++++    ++.++.+++.+++.+.|+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~  298 (386)
T 2dr1_A          219 GAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVR  298 (386)
T ss_dssp             EEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999988876321                  12456678899999999999987654    577888888899988888


Q ss_pred             HHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          393 ALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       393 ~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++  .+.....- ...+.++++++...        ....++.+.|+++||++.+
T Consensus       299 ~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~  342 (386)
T 2dr1_A          299 EI--GLDILAEPGHESPTITAVLTPPG--------IKGDEVYEAMRKRGFELAK  342 (386)
T ss_dssp             HT--TCCBSSCTTCBCSSEEEEECCTT--------CCHHHHHHHHHHTTEECEE
T ss_pred             Hc--CCeeCcCccccCCceEEEEcCCC--------CCHHHHHHHHHHCCeEEec
Confidence            76  33322210 11477888877321        0145788999999999875

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.90  E-value=2.7e-22  Score=204.47  Aligned_cols=275  Identities=12%  Similarity=0.075  Sum_probs=181.9

Q ss_pred             chHHHHHHHHHHHhCCCC---------CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          140 NHAIADFAEALASKMPGN---------LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~---------~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      .+...++++.+.+..+..         .++|++++|+++|++.+++...  .+++.|++.+++|++....+...      
T Consensus        81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~------  152 (425)
T 2r2n_A           81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--NPGDNVLLDEPAYSGTLQSLHPL------  152 (425)
T ss_dssp             HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHGGG------
T ss_pred             HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHc------
Confidence            344555566665544322         2589999999999999998763  25688999999999876544322      


Q ss_pred             cccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--------CCCeEEEEEcc-ccCCCceeeCCCChHHHHH
Q 013235          211 KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--------SGHVAGFLSES-IQGVGGIIELAPGYLPAVY  281 (447)
Q Consensus       211 ~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--------~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~  281 (447)
                             |...+..|...   .+.|    .++|++.+....        ..++++|++.| .++++|.+. +.+.+++|.
T Consensus       153 -------g~~~~~v~~~~---~~~d----~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~  217 (425)
T 2r2n_A          153 -------GCNIINVASDE---SGIV----PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIY  217 (425)
T ss_dssp             -------TCEEEEECEET---TEEC----HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHH
T ss_pred             -------CCEEEEeCcCC---CCCC----HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHH
Confidence                   22222222111   1123    577888876321        13567887766 677788765 788999999


Q ss_pred             HHHHHhCCEEEEeccccCccccCCC---cccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCCh
Q 013235          282 KSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP  358 (447)
Q Consensus       282 ~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np  358 (447)
                      ++|++||+++|+||+|++|.+.|..   +..++..+....+.+|||.+++|+|+|++++++++++.+.......+++.|+
T Consensus       218 ~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~  297 (425)
T 2r2n_A          218 ELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPST  297 (425)
T ss_dssp             HHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCH
T ss_pred             HHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCH
Confidence            9999999999999999988776632   2222223333445589999999999999999999998887544556788999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHh-cCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHH-
Q 013235          359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER---LTALKDK-YGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLY-  431 (447)
Q Consensus       359 ~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~---L~~l~~~-~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~-  431 (447)
                      ++++++.++|+.+.++++.++++++.++++++   |.+..++ ++.+.  ..+..|+++++++....     +   ..+ 
T Consensus       298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----~---~~~~  369 (425)
T 2r2n_A          298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----D---VKEL  369 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----C---CHHH
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----C---HHHH
Confidence            99999999998654433444444443333322   2222223 23222  23567899999984311     0   123 


Q ss_pred             HHHHHHhCCceeec
Q 013235          432 IMDKMKGICALFFS  445 (447)
Q Consensus       432 ~~~~l~~~Gvlv~~  445 (447)
                      +.+.|.++||++.+
T Consensus       370 ~~~~l~~~gv~v~p  383 (425)
T 2r2n_A          370 IEEKAVKMGVLMLP  383 (425)
T ss_dssp             HHTHHHHTTEECEE
T ss_pred             HHHHHHHCCcEEec
Confidence            56788899999864

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.90  E-value=3.8e-23  Score=208.08  Aligned_cols=314  Identities=13%  Similarity=0.041  Sum_probs=197.1

Q ss_pred             CeEEEecCCcccccCCCCC--HHHHHHHHH-HHHhccccccccc-chHHHHHHHHHHHhCCC------CCc--eEEEcCC
Q 013235           99 RRYLDAFGGIATVCCGHCH--PYVVDSIVN-QIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNS  166 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~--p~v~~A~~~-~l~~~~~~~~~~~-~~~~~elae~L~~~~~~------~~~--~v~~~~s  166 (447)
                      ..+|||..|++..+-|+.+  |.|.+|+.+ +++...  ...|. .....++.+.|++++..      ..+  +|++++|
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g  103 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG--ASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG  103 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccc--cccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCC
Confidence            3579999887555566665  899999998 876521  12232 23345566666665432      345  7999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      |++|++.++++.....+++.|++.+++|++....+...+.           .+..++..  ....++.|    .+++++.
T Consensus       104 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~  166 (397)
T 3fsl_A          104 GSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-----------EVSTYPWY--DEATNGVR----FNDLLAT  166 (397)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-----------CEEEECCE--ETTTTEEC----HHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-----------ceEEEeee--eccCCcCc----HHHHHHH
Confidence            9999999988766566778999999999987655443221           12223220  01112224    6778888


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccccccc-CCCCC---EEE
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH-GVVPD---IVT  321 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~-gv~pD---ivt  321 (447)
                      +.+.. .+..++++...++++|.+. +.+.+++|.++|++||+++|+||+|++|...+. .......+ +..++   +.+
T Consensus       167 l~~~~-~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  244 (397)
T 3fsl_A          167 LKTLQ-AGSIVLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNS  244 (397)
T ss_dssp             HTTCC-TTCEEEECSSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred             HHhCC-CCCEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEec
Confidence            76542 3567777777778888765 677899999999999999999999999876531 22222211 22233   336


Q ss_pred             eecccc-CCcccccccc---CHHHHHhhcCC-c---ccccCCCChHHHHHHHHHHHHH------h--hhhHHHHHHHHHH
Q 013235          322 MAKGIG-NGIPLGAVVT---TPEIAEVLTRR-N---YFNTFGGNPVCTAAGHAVLKVI------Q--KDKLQNNAHVVGS  385 (447)
Q Consensus       322 ~sK~lg-~G~pigav~~---~~~i~~~l~~~-~---~~~T~~~np~a~aaala~L~~i------~--~~~l~~~~~~~g~  385 (447)
                      +||.++ .|+|+|++++   ++++++.+... .   ...+.+.++++++++.+.|+..      +  -+++.++++++.+
T Consensus       245 ~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~  324 (397)
T 3fsl_A          245 FSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQ  324 (397)
T ss_dssp             CTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999 7999999964   56665533221 1   1233344677777776666421      1  1245566667777


Q ss_pred             HHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          386 YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+.|+++....++....+..|+++++.+.            ...+.+.|.++||++.+
T Consensus       325 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~  372 (397)
T 3fsl_A          325 ELVKVLSTEMPERNFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIA  372 (397)
T ss_dssp             HHHHHHHHHCTTSCCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCT
T ss_pred             HHHHHHHhcCCCCCceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECC
Confidence            7777776653211111112334666665541            13466677889999875

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.90  E-value=3.8e-22  Score=200.58  Aligned_cols=309  Identities=12%  Similarity=0.062  Sum_probs=195.3

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE  172 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e  172 (447)
                      +|+.+|||..|..  .++ .+|.+.+++.+.++....  ....+..+...++++.+.+..+  ...++|++++||++|++
T Consensus        29 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~  105 (385)
T 1b5p_A           29 QGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF  105 (385)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence            3556789887765  345 468999999988865311  1111123334445555544333  24568999999999999


Q ss_pred             HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (447)
Q Consensus       173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (447)
                      .+++...  .+++.|++..++|++....+...             |...+..|......|..|    .+++++.+.   +
T Consensus       106 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---~  163 (385)
T 1b5p_A          106 NLFQAIL--DPGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT---P  163 (385)
T ss_dssp             HHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC---T
T ss_pred             HHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHHhcC---C
Confidence            9998653  35678999999998655433221             222222222111123334    456665553   2


Q ss_pred             CCeEEEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eeecccc-C
Q 013235          253 GHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG-N  328 (447)
Q Consensus       253 ~~~aavi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg-~  328 (447)
                       ++.+|++ +| ++++|.+. +++.+++|.++|++||+++|+||+|..|...| ....+..+.-..+++  +|||.++ .
T Consensus       164 -~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~  239 (385)
T 1b5p_A          164 -RTKALVVNSP-NNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMT  239 (385)
T ss_dssp             -TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCG
T ss_pred             -CCEEEEEeCC-CCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhcCCc
Confidence             4555544 55 55666654 67889999999999999999999999886655 333332221112333  6899998 6


Q ss_pred             CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH---Hhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV---IQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       329 G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~---i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      |+++|++++++++++.+.......+++.+++++.++.++|+.   ..+  ++..+++++..+++.+.|+++  .....  
T Consensus       240 G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--  315 (385)
T 1b5p_A          240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLKAV--  315 (385)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC--
T ss_pred             ccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCeec--
Confidence            999999999999988876544446778889999988888863   221  234455666666777776664  22211  


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ....|+++.+.+....       ....++.+.|+++||++.+
T Consensus       316 ~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~gv~v~~  350 (385)
T 1b5p_A          316 RPSGAFYVLMDTSPIA-------PDEVRAAERLLEAGVAVVP  350 (385)
T ss_dssp             CCSBTTEEEEECTTTC-------SSHHHHHHHHHHTTEECEE
T ss_pred             CCCeeEEEEEecCCCC-------CCHHHHHHHHHHCCeEEec
Confidence            1233556666652100       0135688889999999875

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.90  E-value=1.3e-22  Score=200.00  Aligned_cols=284  Identities=13%  Similarity=0.077  Sum_probs=190.4

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC---CCCceEEEcCCHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~---~~~~~v~~~~sGseA~e~Ai  175 (447)
                      .++|||.+|..  +++ .+|++.+|+.+++...  ....|+.....+++++|+++++   .+.++|++++||++|++.++
T Consensus        19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~   93 (335)
T 1uu1_A           19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSD--ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM   93 (335)
T ss_dssp             CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGG--GGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred             CcceECCCCCC--CCC-CCHHHHHHHHHHhhhh--hhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence            46899988876  455 6899999999887432  1223444446788999998886   55678999999999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      +.+     ++.|++. ++||+....+...             |...+..|..  ..|+.|.    +++        + ++
T Consensus        94 ~~~-----gd~Vl~~-p~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d~----~~l--------~-~~  139 (335)
T 1uu1_A           94 LMF-----DRSVFFP-PTYSCYRIFAKAV-------------GAKFLEVPLT--KDLRIPE----VNV--------G-EG  139 (335)
T ss_dssp             HHS-----SEEEECS-SSCHHHHHHHHHH-------------TCEEEECCCC--TTSCCCC----CCC--------C-TT
T ss_pred             HHh-----CCcEEEC-CCcHHHHHHHHHc-------------CCeEEEeccC--CCCCCCH----HHc--------C-CC
Confidence            865     4788888 9999876544332             1222222211  1122231    122        1 34


Q ss_pred             EEEE-EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccccCCCCCEEEeecccc-CCccc
Q 013235          256 AGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPL  332 (447)
Q Consensus       256 aavi-~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pi  332 (447)
                      ++|+ ++| ++++|.+.+    .+++.++++.+| ++|+||+|++|+. + .... .+..+....+.+++|.+| +|+|+
T Consensus       140 ~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~-~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~  211 (335)
T 1uu1_A          140 DVVFIPNP-NNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHG-E-SYVDFLKKYENLAVIRTFSKAFSLAAQRV  211 (335)
T ss_dssp             EEEEEESS-CTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHC-C-CCGGGGGTCSSEEEEEESTTTTTCGGGCC
T ss_pred             CEEEEeCC-CCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcc-h-hHHHHhhhCCCEEEEecchhhcCCcccCe
Confidence            4555 677 677787764    445555555558 9999999998753 2 2222 233333344558999998 79999


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~  411 (447)
                      |++++++++++.+...  ..+|+.|+++++++.++|+..+ -+++.++++++.+++.+.|+++  ...   -.++.|.++
T Consensus       212 G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~~~  284 (335)
T 1uu1_A          212 GYVVASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM--GYR---ITDSRGNFV  284 (335)
T ss_dssp             EEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH--TCC---BCCCCSSEE
T ss_pred             EEEEeCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CcE---EcCCCCeEE
Confidence            9999999998877642  2457899999999999987531 2345566777777777777665  222   235567888


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.        . ....++.+.|+++||++.+
T Consensus       285 ~~~~~--------~-~~~~~~~~~l~~~gi~v~~  309 (335)
T 1uu1_A          285 FVFME--------K-EEKERLLEHLRTKNVAVRS  309 (335)
T ss_dssp             EEECC--------T-HHHHHHHHHHHHHTEEEEE
T ss_pred             EEECC--------C-CCHHHHHHHHHHCCEEEEE
Confidence            87762        1 2245788899999999863

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.90  E-value=1.6e-23  Score=213.05  Aligned_cols=311  Identities=12%  Similarity=0.001  Sum_probs=202.7

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHH--HHHHhcccccccc-c-chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHH--HH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIV--NQIKRIQHSTVLY-L-NHAIADFAEALASKMPGNLKVVFFTNSGTEANE--LA  174 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~--~~l~~~~~~~~~~-~-~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e--~A  174 (447)
                      .|||..|.....+...+|.+.+|+.  +.+. .......| . .....+|++.|+++++.+.++|++++|+++|+.  .+
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~  105 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL  105 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence            4777776665333445567777775  3333 11222345 2 345679999999999877789999999999997  77


Q ss_pred             HHHHHhh-cC--------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          175 IMMARLY-TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       175 ik~ar~~-t~--------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      ++..... .|        ++.|++.+++|++........+             ...+..|....   +.|    .++|++
T Consensus       106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---g~d----~~~l~~  165 (423)
T 3ez1_A          106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG-------------FELLTVDMQSD---GPD----VDAVER  165 (423)
T ss_dssp             HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETT---EEC----HHHHHH
T ss_pred             HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEeccCCCC---CCC----HHHHHH
Confidence            7755432 33        5899999999998766544332             11111111111   123    677888


Q ss_pred             HHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHH-HHhCCEEEEeccccCccccC---C---Ccccc----ccc
Q 013235          246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTG---S---HFWGF----EAH  313 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tGfgr~G---~---~~~~~----~~~  313 (447)
                      .+.+  ..++++|+++| .++++|.+. +.+.+++|.++| ++||+++|+||+|+.+...+   .   .++.+    +..
T Consensus       166 ~l~~--~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (423)
T 3ez1_A          166 LAGT--DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYP  242 (423)
T ss_dssp             HHHS--CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCT
T ss_pred             HHhh--CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCC
Confidence            7752  23678888887 567788776 667799999999 99999999999998543222   0   11111    122


Q ss_pred             CCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHH-------HH
Q 013235          314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG-------SY  386 (447)
Q Consensus       314 gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g-------~~  386 (447)
                      +....+.+|||.+.+|+++|++++++++++.+.......+++.+++++.++.+.|+.+ .+.+.+++++..       +.
T Consensus       243 ~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  321 (423)
T 3ez1_A          243 DRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEY-PGGLEGLMRDHAAIIAPKFRA  321 (423)
T ss_dssp             TSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHH
Confidence            3334466899997789999999999999998876556678889999999998888741 022333333333       33


Q ss_pred             HHHHHHHHHHhcC-Cee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          387 LKERLTALKDKYG-IIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       387 l~~~L~~l~~~~~-~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+.|.+...+.+ .+. ..+..|+++++++...         ....+.+.|.++||++.+
T Consensus       322 l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~  373 (423)
T 3ez1_A          322 VDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTP  373 (423)
T ss_dssp             HHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCC
T ss_pred             HHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEec
Confidence            3333433222222 122 2345689999998432         135678889999999975

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.89  E-value=6.2e-22  Score=194.57  Aligned_cols=288  Identities=13%  Similarity=0.046  Sum_probs=197.9

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      +.+++|||.+|..  ++| .+|.|.+++.++++..    ..|+++...++.++|+++++...++++++++++++++.+++
T Consensus        14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~   86 (337)
T 3p1t_A           14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA   86 (337)
T ss_dssp             CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence            4568999998875  667 7899999999887654    34667788999999999997767789999999999999998


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ..    +++.|++.+++|++....+...             |+..+..|...  .++.|    .+++++.     . +..
T Consensus        87 ~~----~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~-----~-~~~  137 (337)
T 3p1t_A           87 EF----SSMRFVTAWPGFDGYRARIAVS-------------GLRHFEIGLTD--DLLLD----PNDLAQV-----S-RDD  137 (337)
T ss_dssp             HS----TTSEEEEESSSCSHHHHHHTTS-------------CCEEEEECBCT--TSSBC----HHHHTTC-----C-TTE
T ss_pred             hc----CCCeEEEeCCCcHHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHhh-----c-CCC
Confidence            65    5688999999998765443221             22222222211  12334    4455432     2 345


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-CCcccccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pigav  335 (447)
                      ++++...++++|.+.+    ++++.++|+++++ +|+||+|.+|+..+. .. ....+....+.+++|.+| .|+++|++
T Consensus       138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~-~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~  210 (337)
T 3p1t_A          138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRA-RG-LAYGENELVFRSFSKSYGLAGLRLGAL  210 (337)
T ss_dssp             EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSS-SC-CCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccc-cc-cccCCCEEEEeeCchhccCcchheEEE
Confidence            6666666778888887    8899999999997 566999998876552 11 111122122346899998 89999999


Q ss_pred             ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                      ++++++++.+...  ..+++.|+++++++.++|+..+ -++..++..+..+++.+.|+++    + +...+..|.++.+.
T Consensus       211 ~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~  283 (337)
T 3p1t_A          211 FGPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----G-YRVASSEANFVLVE  283 (337)
T ss_dssp             ECCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CCBCCCSSSEEEEE
T ss_pred             EeCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----c-CEECCCCCeEEEEE
Confidence            9999999988653  3457788898888888876322 1233444455555566655554    2 22345667777776


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+           ...+.+.|.++||++.+
T Consensus       284 ~~~-----------~~~~~~~l~~~gi~v~~  303 (337)
T 3p1t_A          284 NAA-----------GERTLRFLRERGIQVKD  303 (337)
T ss_dssp             CTT-----------THHHHHHHHHTTEECEE
T ss_pred             cCC-----------HHHHHHHHHHCCeEEEE
Confidence            521           13567788899999875

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.89  E-value=5.2e-22  Score=201.46  Aligned_cols=262  Identities=12%  Similarity=0.070  Sum_probs=180.3

Q ss_pred             ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH--hc-ccc------cccccchHHHHHHHHHHHhCCCCCceEEEcC
Q 013235           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK--RI-QHS------TVLYLNHAIADFAEALASKMPGNLKVVFFTN  165 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~--~~-~~~------~~~~~~~~~~elae~L~~~~~~~~~~v~~~~  165 (447)
                      +.++..|||+.++      |+.+|+|.+|+.+++.  .. ...      ......+...+++++|++.++.+.+.|+|++
T Consensus        19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~   92 (423)
T 3lvm_A           19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS   92 (423)
T ss_dssp             -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred             ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            4466788997643      4689999999999887  32 111      1112345667899999999887677899999


Q ss_pred             CHHHHHHHHHHHHHh-hc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235          166 SGTEANELAIMMARL-YT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (447)
Q Consensus       166 sGseA~e~Aik~ar~-~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (447)
                      ||++|++.+++.+.. ++ +++.|++..++|++.......+..          .|...+..|...  .+..|    .++|
T Consensus        93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l  156 (423)
T 3lvm_A           93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQR--NGIID----LKEL  156 (423)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCT--TSCCC----HHHH
T ss_pred             ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHH----------cCCEEEEeccCC--CCccC----HHHH
Confidence            999999999996653 33 368899999999886654432210          022222222111  12224    5677


Q ss_pred             HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee
Q 013235          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA  323 (447)
Q Consensus       244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s  323 (447)
                      ++.+.    +++++|+++++++++|.+.+    +++|.++|++||++||+||+|++ +..     ........+|++++|
T Consensus       157 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~di~~~s  222 (423)
T 3lvm_A          157 EAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVDLMSFS  222 (423)
T ss_dssp             HHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCSEEEEE
T ss_pred             HHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCCEEEec
Confidence            77664    26789999999999999886    99999999999999999999863 221     122233458999877


Q ss_pred             --ccccCCccccccccCHHHHHhhcCCcc-------cccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH
Q 013235          324 --KGIGNGIPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       324 --K~lg~G~pigav~~~~~i~~~l~~~~~-------~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~  392 (447)
                        |.+ |+.++|++++++++++.+.....       ..++..|+.+++++.++|+.+++  +++.++.+++.++|++.|+
T Consensus       223 ~sK~~-g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  301 (423)
T 3lvm_A          223 GHKIY-GPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK  301 (423)
T ss_dssp             STTTT-SCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHhc-CCCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              954 44458999999887665544321       23455678888888888887765  4566666777777766664


Q ss_pred             H
Q 013235          393 A  393 (447)
Q Consensus       393 ~  393 (447)
                      +
T Consensus       302 ~  302 (423)
T 3lvm_A          302 D  302 (423)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.89  E-value=5.3e-22  Score=200.92  Aligned_cols=297  Identities=11%  Similarity=0.049  Sum_probs=203.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc-ccccc--cc---cchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTV--LY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~-~~~~~--~~---~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      +|..|||+.+      .|+.+|.|.+|+.++++.. .....  .+   ..+...+++++|+++++.+.++|+|++||+++
T Consensus        27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a  100 (416)
T 1qz9_A           27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN  100 (416)
T ss_dssp             TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence            5788999753      3578999999999999753 11111  11   13667899999999997666789999999999


Q ss_pred             HHHHHHHHHhh----cCCCeEEEEcCCcccCchhhhh-ccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          171 NELAIMMARLY----TGCNDIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       171 ~e~Aik~ar~~----t~~~~ii~~~~~yHG~~~~~~~-~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      ++.+++.++..    .+++++|+..+.+|+....++. +...  ...   ...+..++.               .++|++
T Consensus       101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~--~~~---g~~~~~v~~---------------~~~l~~  160 (416)
T 1qz9_A          101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM--LQQ---GYTLRLVDS---------------PEELPQ  160 (416)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH--HCS---SCEEEEESS---------------GGGHHH
T ss_pred             HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH--hcC---CceEEEeCc---------------HHHHHH
Confidence            99999977533    3455677788888886554332 1100  000   001222221               245666


Q ss_pred             HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--  323 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--  323 (447)
                      .+.    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +..+.+  .+|++++|  
T Consensus       161 ~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~~  226 (416)
T 1qz9_A          161 AID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADYAIGCTY  226 (416)
T ss_dssp             HCS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSEEEECSS
T ss_pred             HhC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCEEEecCc
Confidence            553    26789999999999999876    9999999999999999999996 54332   222333  37998875  


Q ss_pred             ccccCCccc-cccccCHHHHHhhcCCcc-----------------------cccCCCChHHHHHHHHHHHHHhh---hhH
Q 013235          324 KGIGNGIPL-GAVVTTPEIAEVLTRRNY-----------------------FNTFGGNPVCTAAGHAVLKVIQK---DKL  376 (447)
Q Consensus       324 K~lg~G~pi-gav~~~~~i~~~l~~~~~-----------------------~~T~~~np~a~aaala~L~~i~~---~~l  376 (447)
                      |.+++|.++ |++++++++++.+....+                       ...+..|+.+++++.++|+.+.+   +++
T Consensus       227 K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  306 (416)
T 1qz9_A          227 KYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASL  306 (416)
T ss_dssp             STTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            999888887 999999988766654211                       11234678888888899998764   356


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--hcCCeeeE--eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          377 QNNAHVVGSYLKERLTALKD--KYGIIGDV--RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       377 ~~~~~~~g~~l~~~L~~l~~--~~~~i~~v--rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .++.+++.+++.+.|+++..  .+..+...  +..+.++++++.        +   ..++.+.|.++||++.
T Consensus       307 ~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~l~~~gi~~~  367 (416)
T 1qz9_A          307 RRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------E---GYAVIQALIDRGVIGD  367 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------T---HHHHHHHHHTTTEECE
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------C---HHHHHHHHHhCCcEec
Confidence            78888889999999887633  22211111  124667777762        1   3568889999999874

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.89  E-value=6.7e-22  Score=197.37  Aligned_cols=297  Identities=14%  Similarity=0.111  Sum_probs=199.2

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccc--c---cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HST--V---LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~--~---~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~  173 (447)
                      .|||+.++      |+.+|+|.+|+.++++... ...  .   ........+++++|+++++.+.+++++++||++|++.
T Consensus         3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~   76 (384)
T 1eg5_A            3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW   76 (384)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred             EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence            57887653      4789999999999987631 111  1   1124556889999999987666789999999999999


Q ss_pred             HHHHHHh--hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          174 AIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       174 Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      +++.++.  ..++++|++.+++||+.......+..          .|...+..|...  .+..|    .++|++.+.   
T Consensus        77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~---  137 (384)
T 1eg5_A           77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSM----------KGFKVKYVPVDS--RGVVK----LEELEKLVD---  137 (384)
T ss_dssp             HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHH----------TTCEEEECCBCT--TSCBC----HHHHHHHCC---
T ss_pred             HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHh----------cCCEEEEEccCC--CCccC----HHHHHHHhC---
Confidence            9998763  13568899999999986554421110          022222222211  12234    566776664   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC--CEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                       .++++|++++.++++|.+.+    +++|.++|++||  +++|+||+|+ ||...   +.++.  ..+|++++|  |.+|
T Consensus       138 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~sK~~g  206 (384)
T 1eg5_A          138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP---FSLEK--LEVDYASFSAHKFHG  206 (384)
T ss_dssp             -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC---CCCTT--TCCSEEEEEGGGGTS
T ss_pred             -CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc---cCchh--cCCCEEEecHHHhcC
Confidence             26788999999999998886    899999999999  9999999996 65432   22222  357999877  9765


Q ss_pred             C-CccccccccCHHH--HHhhcCC---cccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          328 N-GIPLGAVVTTPEI--AEVLTRR---NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       328 ~-G~pigav~~~~~i--~~~l~~~---~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      . |  +|++++++++  ...+...   ....+++.|+++++++.++|+.+++  +++.++.+++.+++.+.|++.  .+.
T Consensus       207 ~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  282 (384)
T 1eg5_A          207 PKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAH  282 (384)
T ss_dssp             CTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--TCE
T ss_pred             CCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--CeE
Confidence            3 4  7999999876  2222211   1235677889999999999987643  356677777788888777652  221


Q ss_pred             CeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          400 IIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       400 ~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+....+ .+.++.+.+...         ...++.+.|.++||++.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~  320 (384)
T 1eg5_A          283 IITPLEISLPNTLSVSFPNI---------RGSTLQNLLSGYGIYVST  320 (384)
T ss_dssp             ECSCTTSBCTTEEEEECTTC---------CHHHHHHHHHHTTEECBC
T ss_pred             EeCCcccCCCCEEEEEeCCC---------CHHHHHHHHhhCCeEEec
Confidence            1111111 345666665310         135688889999999875

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.89  E-value=3.4e-22  Score=205.83  Aligned_cols=317  Identities=15%  Similarity=0.132  Sum_probs=191.9

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      .|+.||||.+++.+       +.|.+++.+++....   ..| ..+...+|+++|+++++  .++++|++||++|++.|+
T Consensus        41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~ggt~A~~~al  108 (467)
T 1ax4_A           41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGD---EAYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILF  108 (467)
T ss_dssp             GGGCSEECSCSSSC-------CCEEHHHHHHHHTCC---CCSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHH
T ss_pred             CCceeeecccCcCC-------HHHHHHHHHHHhhcc---cccccCccHHHHHHHHHHHcC--CCcEEEcCCcHHHHHHHH
Confidence            47789999887753       778888887765431   223 45677899999999985  478999999999999999


Q ss_pred             HHHHhh---cCCCe--EEEEcCCcc-cCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC--CCChHHHHHHHHHHH
Q 013235          176 MMARLY---TGCND--IISLRNAYH-GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF--GADGEMYAKDVQDLI  247 (447)
Q Consensus       176 k~ar~~---t~~~~--ii~~~~~yH-G~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~--~~d~~~~~~~le~~i  247 (447)
                      +.++.+   +|+.+  ||+.  .+| +.+..++...+........      ....+.....+|  ..|    .++|++.+
T Consensus       109 ~~~~~~~~~~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~d----~~~le~~i  176 (467)
T 1ax4_A          109 PVLLKYKQKEGKAKNPVFIS--NFHFDTTAAHVELNGCKAINIVT------EKAFDSETYDDWKGDFD----IKKLKENI  176 (467)
T ss_dssp             HHHHHHHHHTTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECBC------GGGGCTTSCCTTTTCBC----HHHHHHHH
T ss_pred             HHHHHhhccCCCccceEEEe--ccccchhhHHHhccCCceecccc------cccccccccCCcccccC----HHHHHHHH
Confidence            998764   45431  5555  555 5445455444321110000      000000000111  224    67788887


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----c------cccCCCcccccccC---
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----F------ARTGSHFWGFEAHG---  314 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----f------gr~G~~~~~~~~~g---  314 (447)
                      .....+++++|+++|+++++|..+++.+++++|+++|++||++||+||++..    |      +..|..   ....+   
T Consensus       177 ~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  253 (467)
T 1ax4_A          177 AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT---IKEVIFDM  253 (467)
T ss_dssp             HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC---HHHHHHHH
T ss_pred             HhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc---hhhhhhhh
Confidence            6432237899999999998844566889999999999999999999999752    0      222210   00011   


Q ss_pred             -CCCCEEEeeccccCCccccccc-cC-H-HHHHhhcCC----cccccCCCChHHHHHHHH-HHHHHhhhhHHHHHHHHHH
Q 013235          315 -VVPDIVTMAKGIGNGIPLGAVV-TT-P-EIAEVLTRR----NYFNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGS  385 (447)
Q Consensus       315 -v~pDivt~sK~lg~G~pigav~-~~-~-~i~~~l~~~----~~~~T~~~np~a~aaala-~L~~i~~~~l~~~~~~~g~  385 (447)
                       ..+|+++++.+-+.|+|+|+++ ++ + ++++.+...    ....++++++..+.++.+ +|+.+.+++..++..++++
T Consensus       254 ~~~~d~~~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  333 (467)
T 1ax4_A          254 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVK  333 (467)
T ss_dssp             GGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccceEEEeccccCCCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence             1267776544334466776555 56 5 777765431    122466677666555444 6765554456666667788


Q ss_pred             HHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC-HHHHHHHHHHH-HhCCceeec
Q 013235          386 YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKM-KGICALFFS  445 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~-~~~~~~~~~~l-~~~Gvlv~~  445 (447)
                      ++++.|++.  .++.+...+  |.++++.+..- ....+. .....++.+.| .++||++.+
T Consensus       334 ~l~~~L~~~--~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gv~v~~  390 (467)
T 1ax4_A          334 YLGDRLREA--GIPIQYPTG--GHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVE  390 (467)
T ss_dssp             HHHHHHHHT--TCCBCSSCC--SSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHhC--CCCcccCCC--ceEEEEehhhh-ccccccCCCCHHHHHHHHHHhcCceeee
Confidence            888888772  444433333  44555552100 000011 11246788888 889999864

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.89  E-value=3.9e-22  Score=201.21  Aligned_cols=299  Identities=13%  Similarity=0.061  Sum_probs=193.1

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHh-ccc--ccccc--cchH---HHHHH-HHHHHhCCCCCceEEEcCCHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQH--STVLY--LNHA---IADFA-EALASKMPGNLKVVFFTNSGTE  169 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~-~~~--~~~~~--~~~~---~~ela-e~L~~~~~~~~~~v~~~~sGse  169 (447)
                      ++|||+.+|.+..     +|+|.+|+.+++.. ..+  ....+  ..+.   ..+++ ++|++.++.+. ..++++||++
T Consensus        23 ~~~i~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-~~i~~~sGt~   96 (407)
T 2dkj_A           23 REGLELIASENFV-----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-ANVQPHSGSQ   96 (407)
T ss_dssp             HTSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHH
T ss_pred             hcceeeccCCCCC-----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc-ceEEecchHH
Confidence            4689999888643     89999999999864 211  11111  1222   22222 47888876543 3356788999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCc--hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNA--AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~--~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      |++.+++.+.  .++++|++.+++|++..  ..++...+.          .+..++.+.. ...+..|    .+++++.+
T Consensus        97 a~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~-~~~~~~d----~~~l~~~l  159 (407)
T 2dkj_A           97 ANMAVYMALM--EPGDTLMGMDLAAGGHLTHGSRVNFSGK----------LYKVVSYGVR-PDTELID----LEEVRRLA  159 (407)
T ss_dssp             HHHHHHHHHC--CTTCEEEEECGGGTCCGGGTCTTSHHHH----------HSEEEEECCC-TTTSSCC----HHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCEEEEecccccCccchHHHHHhcCc----------eEEEEecCCC-cccCccC----HHHHHHHH
Confidence            9999999773  46688999999998773  222211110          0111221100 0123345    56777777


Q ss_pred             HccCCCCeEEEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC-ccccCCCcccccccCCCCCEE--Eee
Q 013235          248 DFGTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIV--TMA  323 (447)
Q Consensus       248 ~~~~~~~~aavi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-fgr~G~~~~~~~~~gv~pDiv--t~s  323 (447)
                      ...   ++++|++ +|+++   .+.+    +++|.++|++||+++|+||+|++ +...| ....  ..+ .+|++  +++
T Consensus       160 ~~~---~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~di~~~s~s  225 (407)
T 2dkj_A          160 LEH---RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAG-LHPN--PLP-YAHVVTSTTH  225 (407)
T ss_dssp             HHH---CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-CSCC--CTT-TCSEEEEESS
T ss_pred             hhc---CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccC-ccCC--ccc-cccEEEEecc
Confidence            532   3456666 78775   2332    89999999999999999999986 54455 2221  112 27888  689


Q ss_pred             ccccCCccccccccC-HHHHHhhcCC-cccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235          324 KGIGNGIPLGAVVTT-PEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY  398 (447)
Q Consensus       324 K~lg~G~pigav~~~-~~i~~~l~~~-~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~  398 (447)
                      |+++ |.++|+++++ +++++.+... .++.+.+.++..++++.++|+.+.+   +++.++.+++.+++.+.|+++  .+
T Consensus       226 K~l~-g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~  302 (407)
T 2dkj_A          226 KTLR-GPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GY  302 (407)
T ss_dssp             GGGC-CCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             ccCC-CCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cc
Confidence            9987 5578999999 8998877542 2344555678778788888887644   456778888888888888775  33


Q ss_pred             CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       399 ~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..+.. ++.|.++++++....       ....++.+.|.++||++.+
T Consensus       303 ~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~  341 (407)
T 2dkj_A          303 RIVTG-GTDNHLFLVDLRPKG-------LTGKEAEERLDAVGITVNK  341 (407)
T ss_dssp             EEGGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEE
T ss_pred             eeecC-CCCceEEEEECcccC-------CCHHHHHHHHHHcCceecC
Confidence            22211 457889998884311       0135688889999999875

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.89  E-value=6.2e-23  Score=209.02  Aligned_cols=310  Identities=13%  Similarity=0.027  Sum_probs=201.0

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHH-hcccccccccch-HHHHHHHHHHHhCCCCCceEEEcCCHHHHH--HHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAIM  176 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~~~~~~~~~-~~~elae~L~~~~~~~~~~v~~~~sGseA~--e~Aik  176 (447)
                      .|||..|.....+-..+|.+.+++.+++. ........|+.+ ...+|++.|+++++.+.++|++++++++++  ..+++
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~  113 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW  113 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence            68988777632111245677777765431 111112345543 377899999998877778899999999997  55556


Q ss_pred             HHHhh--cC--------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          177 MARLY--TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       177 ~ar~~--t~--------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      ....-  +|        ++.|++.+++|++....+...+             ...+..|....   +.|    .++|++.
T Consensus       114 ~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---g~d----~~~l~~~  173 (422)
T 3d6k_A          114 SYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFG-------------FEMINVPMTDE---GPD----MGVVREL  173 (422)
T ss_dssp             HHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETT---EEC----HHHHHHH
T ss_pred             HhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcC-------------CEEEecCCCCC---CCC----HHHHHHH
Confidence            44321  01        2369999999998876554332             11222111111   123    5677777


Q ss_pred             HHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHH-HhCCEEEEeccccC--ccccCCCcccc-------cccCC
Q 013235          247 IDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAG--FARTGSHFWGF-------EAHGV  315 (447)
Q Consensus       247 i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tG--fgr~G~~~~~~-------~~~gv  315 (447)
                      +..   .++++|++.| .++++|.+. +.+++++|.++|+ +||+++|+||+|..  |+..|.....+       +..+.
T Consensus       174 l~~---~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (422)
T 3d6k_A          174 VKD---PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNR  249 (422)
T ss_dssp             HTS---TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTC
T ss_pred             Hhc---CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCc
Confidence            752   2577878666 566778765 7889999999999 99999999999974  76554212222       12344


Q ss_pred             CCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHH
Q 013235          316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ-------NNAHVVGSYLK  388 (447)
Q Consensus       316 ~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~-------~~~~~~g~~l~  388 (447)
                      ..++.+|||..++|+|+|++++++++++.+.......+++.|+++++++.++|+..  +.+.       +.+++..+++.
T Consensus       250 ~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~  327 (422)
T 3d6k_A          250 FWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDV--AGLKAHMLKHAASLAPKFERVL  327 (422)
T ss_dssp             EEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHH
Confidence            55666899997789999999999999988876555567889999999988887521  2222       33333444555


Q ss_pred             HHHHHHHHhcCCeee-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          389 ERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       389 ~~L~~l~~~~~~i~~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.|.+...+++.+.- .+..|+++++++...      +   ...+.+.|.++||++.+
T Consensus       328 ~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------~---~~~~~~~l~~~gV~v~~  376 (422)
T 3d6k_A          328 EILDSRLSEYGVAKWTSPTGGYFISVDVVPG------T---ASRVVELAKEAGIALTG  376 (422)
T ss_dssp             HHHHHHHGGGTCEEECCCSBSSCEEEEESTT------C---HHHHHHHHHHTTEECCC
T ss_pred             HHHHHhcCcCCceEEeCCCcceEEEEECCCC------C---HHHHHHHHHHCCeEEEc
Confidence            555554333333332 234688999998421      1   34577888999999976

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.88  E-value=7.8e-23  Score=207.20  Aligned_cols=277  Identities=12%  Similarity=0.032  Sum_probs=177.6

Q ss_pred             CCCeEEEecCCcccccCCC--CCHHHHHHHHH-HHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEE--c
Q 013235           97 NGRRYLDAFGGIATVCCGH--CHPYVVDSIVN-QIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--T  164 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh--~~p~v~~A~~~-~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~--~  164 (447)
                      +|+.+|||..|.....-|+  .+|.|.+|+.+ +++..  ....| +.....++.+.+++++..      ..++|++  +
T Consensus        27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t  104 (412)
T 1yaa_A           27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS  104 (412)
T ss_dssp             CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred             CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--cccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEec
Confidence            3566789888875333343  46899999988 77531  11123 233456677777766521      2467999  9


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHH
Q 013235          165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (447)
Q Consensus       165 ~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (447)
                      +||++|++.++++++...+++.|++.+++|++....+...+.           .+..++..+.  ..++.|    .++|+
T Consensus       105 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~  167 (412)
T 1yaa_A          105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-----------KTATYPYWAN--ETKSLD----LNGFL  167 (412)
T ss_dssp             EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-----------CEEEEECEET--TTTEEC----HHHHH
T ss_pred             cchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCc-----------eEEEEeeecC--CCCccC----HHHHH
Confidence            999999999988776666778999999999987654433211           1222222010  112234    56777


Q ss_pred             HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC--CCcccccc-cCCCC----
Q 013235          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGFEA-HGVVP----  317 (447)
Q Consensus       245 ~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G--~~~~~~~~-~gv~p----  317 (447)
                      +.+....+ ..+++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.|  ...+.+.. .+..+    
T Consensus       168 ~~l~~~~~-~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
T 1yaa_A          168 NAIQKAPE-GSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP  245 (412)
T ss_dssp             HHHHHSCT-TCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred             HHHHhCCC-CCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence            77764321 234555455566677654 67889999999999999999999999997654  01222211 11223    


Q ss_pred             C--EEEeeccccC-Cccccccc--c-----CHH----HHHhhcCCcccccCCCChHHHHHHHHHHHHHh--------hhh
Q 013235          318 D--IVTMAKGIGN-GIPLGAVV--T-----TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDK  375 (447)
Q Consensus       318 D--ivt~sK~lg~-G~pigav~--~-----~~~----i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--------~~~  375 (447)
                      +  +.+++|.++. |+|+|+++  +     +++    +++.+.......+.+.|+++++++.++|+...        -++
T Consensus       246 ~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  325 (412)
T 1yaa_A          246 VFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT  325 (412)
T ss_dssp             EEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             eEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            2  3368999997 99999998  7     566    77666542222334458899999888887542        123


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013235          376 LQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       376 l~~~~~~~g~~l~~~L~~l  394 (447)
                      +.++++++.+++.+.|+++
T Consensus       326 ~~~~~~~~~~~l~~~L~~~  344 (412)
T 1yaa_A          326 MSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4556666667777776664

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.88  E-value=1e-21  Score=199.38  Aligned_cols=308  Identities=11%  Similarity=0.012  Sum_probs=190.8

Q ss_pred             CCeEEEecCCcc---cccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC--CCCc---eEEEcCCHH
Q 013235           98 GRRYLDAFGGIA---TVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP--GNLK---VVFFTNSGT  168 (447)
Q Consensus        98 G~~ylD~~~g~~---~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~--~~~~---~v~~~~sGs  168 (447)
                      |..+|||..|..   ...+. .++.|.+|+.+.....   ...|. .....+|.+.+++++.  .+.+   +|++++||+
T Consensus        37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~  112 (418)
T 3rq1_A           37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSE---HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGT  112 (418)
T ss_dssp             GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHH---HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHH
T ss_pred             CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccc---cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchH
Confidence            446677776643   12223 5677877776543321   11121 2223445555554331  0234   899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|++.+++...  .+++.|++.+++|++....+...             |...+..|.... .|+.|    .+++++.+.
T Consensus       113 ~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~  172 (418)
T 3rq1_A          113 GGIHHLIHNYT--EPGDEVLTADWYWGAYRVICSDT-------------GRTLVTYSLFDE-HNNFN----HEAFQNRVN  172 (418)
T ss_dssp             HHHHHHHHHHS--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECSBCT-TSSBC----HHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCCEEEECCCCchhHHHHHHHc-------------CCEEEEEeeeCC-CCCcC----HHHHHHHHH
Confidence            99999998553  35688999999998876654433             222222222111 13345    556666665


Q ss_pred             cc-CCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHH------HhCCEEEEeccccCccccCCC--cccccccCCCCC
Q 013235          249 FG-TSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIK------KAGGLCIADEVQAGFARTGSH--FWGFEAHGVVPD  318 (447)
Q Consensus       249 ~~-~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tGfgr~G~~--~~~~~~~gv~pD  318 (447)
                      .. .++..++++++ |.++++|.+. +.+.+++|.++|+      +||+++|+||+|.+|++.|..  .+.....++.+|
T Consensus       173 ~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  251 (418)
T 3rq1_A          173 ELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKE  251 (418)
T ss_dssp             HHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTT
T ss_pred             HhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCC
Confidence            31 01244466665 5478888776 6677999999999      899999999999999877621  122233456667


Q ss_pred             ---EE--Eeecccc-CCcccccccc---CHHHHHhhcCCcc---cccC-CCChHHHHHHHHHHHHHh------h--hhHH
Q 013235          319 ---IV--TMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNY---FNTF-GGNPVCTAAGHAVLKVIQ------K--DKLQ  377 (447)
Q Consensus       319 ---iv--t~sK~lg-~G~pigav~~---~~~i~~~l~~~~~---~~T~-~~np~a~aaala~L~~i~------~--~~l~  377 (447)
                         ++  +|||.++ .|+|+|++++   ++++++.+.....   ..++ ..++++++++.+.|+..+      +  +++.
T Consensus       252 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  331 (418)
T 3rq1_A          252 ILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYY  331 (418)
T ss_dssp             EEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               33  6899998 7999999999   9999988764321   1233 578888888887774321      1  1344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++++.+++.+.|+++  .+..+  ....|+++.+++.        +   ..++.+.|.++||++.+
T Consensus       332 ~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~  384 (418)
T 3rq1_A          332 QLIRDRADIFKQEAAQV--GLPML--PYRGGFFITIPTD--------S---ANAICEELKKEHIYVIA  384 (418)
T ss_dssp             HHHHHHHHHHHHHHHHH--TCCCC--CCCSSSEEEEECT--------T---HHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHhc--CCCCC--CCCceEEEEcCCC--------C---HHHHHHHHHhCCEEEec
Confidence            56666677777777665  33322  2233555555541        1   35677889999999875

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.88  E-value=1.2e-21  Score=196.71  Aligned_cols=299  Identities=12%  Similarity=0.061  Sum_probs=194.9

Q ss_pred             EEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235           92 YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        92 ~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~  171 (447)
                      .++|.+++.+.++...++..+++|..++..+.                   ..+++++|++.++.. +.++|++||++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------------------~~~~~~~l~~~~~~~-~~v~~~~sgt~a~   64 (379)
T 3ke3_A            5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEV-------------------MNDLLSNLKTVYNAE-AAVIIPGSGTYGM   64 (379)
T ss_dssp             ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHH-------------------HHHHHHHHHHHHTCS-EEEEEESCHHHHH
T ss_pred             hhccCCHHHHHHHHHhccCCCCCCCCHHHHHH-------------------HHHHHHHHHHHhCCC-CEEEEcCChhHHH
Confidence            46799999999998777777788887765532                   234566677777654 6789999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCC----CcCCCC-CCChHHHHHHHHHH
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD----PYRGVF-GADGEMYAKDVQDL  246 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~----~~~~~~-~~d~~~~~~~le~~  246 (447)
                      +++++.+   .++++||+++++|||.....+......       ...+..++.+.    .++.+| ..|    .+++++.
T Consensus        65 ~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~g~~~~~~~~~~~d----~~~l~~~  130 (379)
T 3ke3_A           65 EAVARQL---TIDEDCLIIRNGWFSYRWTQILEKGKF-------AKSSTVLTAERTEDTEAPKPFAPVD----IETAVAK  130 (379)
T ss_dssp             HHHHHHH---CTTCEEEEEECSHHHHHHHHHHHHHCC-------SSEEEEEECEESSCCSSCCCEECCC----HHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEeCCchhHHHHHHHHHhCC-------CCceEEEeccccccccccCCCCCCC----HHHHHHH
Confidence            9998643   467899999999998764433221100       00122232211    111111 134    5677777


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccc
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI  326 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~l  326 (447)
                      +...   ++.+|++..+.+.+|.+. |.+++++|.++|++||+++|+||+|+  |  + ..+..+.+++...+.+++|.+
T Consensus       131 i~~~---~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~-~~~~~~~~~~d~~~~s~~K~l  201 (379)
T 3ke3_A          131 IKED---KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--C-VWLDMKELGIDVLISAPQKGW  201 (379)
T ss_dssp             HHHH---TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--T-CCCCHHHHTCSEEEECTTTTT
T ss_pred             Hhhc---CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--C-ccccccccCCCEEEecchhhc
Confidence            7532   345677777777788665 67899999999999999999999996  3  3 345556667633334455999


Q ss_pred             cCCccccccccCHHHHHhhcCC---cc-------------------cccCCCChHHHHHHHHHHHHHhhh---hHHHHHH
Q 013235          327 GNGIPLGAVVTTPEIAEVLTRR---NY-------------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAH  381 (447)
Q Consensus       327 g~G~pigav~~~~~i~~~l~~~---~~-------------------~~T~~~np~a~aaala~L~~i~~~---~l~~~~~  381 (447)
                      +++.++|++++++++++.+...   .+                   ..+++.|+.++++..++|+.++++   ++.++.+
T Consensus       202 ~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~  281 (379)
T 3ke3_A          202 SSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQW  281 (379)
T ss_dssp             CSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence            8777789999999998877541   11                   012356778888888999988765   5677788


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          382 VVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.++|+++|+++  .+..+..- ...+.+..+.+  +      ...  ..+.+.|.++||++.+
T Consensus       282 ~l~~~l~~~l~~~--g~~~~~~~~~~~~~i~~~~~--~------~~~--~~~~~~L~~~Gi~v~~  334 (379)
T 3ke3_A          282 ELGNRVRKVLTDK--GIESVAAEGFEAPGVVVSYT--E------RDD--MHKGSAFAEAGLQIAA  334 (379)
T ss_dssp             HHHHHHHHHHHHT--TCCBSBCTTCBCSSEEEEEC--S------CHH--HHSSHHHHHTTCCCEE
T ss_pred             HHHHHHHHHHHHc--CCEecCCccccCceEEEEcc--C------Ccc--hHHHHHHHHCCeEEeC
Confidence            8888888888876  33332211 01122333322  1      111  1236778899998865

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.88  E-value=5.9e-22  Score=198.40  Aligned_cols=284  Identities=11%  Similarity=0.044  Sum_probs=193.5

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      .+|+|.+|+.+++..  |... ...+...+++++|++.++...+ .++|++||++|++.+++.+  ..++++|++...+|
T Consensus        34 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~  108 (393)
T 3kgw_A           34 LAPRVLAAGSLRMIG--HMQK-EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGI  108 (393)
T ss_dssp             CCHHHHHHTTCCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSH
T ss_pred             CCHHHHHHhcccccC--cccH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCc
Confidence            679999888765322  2111 1245667899999998865443 5899999999999999976  44678899999998


Q ss_pred             ccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          195 HGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       195 HG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      ||...... ...+.          .+..++.+  ..  +..|    .++|++.+...   ++++|++++.++++|.+.+ 
T Consensus       109 ~~~~~~~~~~~~g~----------~~~~~~~~--~~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~-  166 (393)
T 3kgw_A          109 WGMRAAEIADRIGA----------RVHQMIKK--PG--EHYT----LQEVEEGLAQH---KPVLLFLVHGESSTGVVQP-  166 (393)
T ss_dssp             HHHHHHHHHHHTTC----------EEEEEECC--TT--CCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred             hhHHHHHHHHHcCC----------ceEEEeCC--CC--CCCC----HHHHHHHHhhC---CCcEEEEeccCCcchhhcc-
Confidence            76532221 11110          12223221  11  1134    57788777642   5678899999999998876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCcc-
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY-  350 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~~-  350 (447)
                         +++|.++|++||+++|+||+|+ +|  + ..+..+.+  .+|+++++  |+++++.++|++++++++++.+..... 
T Consensus       167 ---l~~i~~l~~~~~~~li~De~~~-~g--~-~~~~~~~~--~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~  237 (393)
T 3kgw_A          167 ---LDGFGELCHRYQCLLLVDSVAS-LG--G-VPIYMDQQ--GIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTK  237 (393)
T ss_dssp             ---CTTHHHHHHHTTCEEEEECTTT-TT--T-SCCCTTTT--TCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred             ---HHHHHHHHHHcCCEEEEECCcc-cc--C-cccchhhc--CCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCC
Confidence               8899999999999999999996 32  1 22333333  35888766  999887789999999999988754211 


Q ss_pred             ----------------------cccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCee-e-
Q 013235          351 ----------------------FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIG-D-  403 (447)
Q Consensus       351 ----------------------~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~-  403 (447)
                                            ..+++.|+.+++++.++++.+++   +++.++++++.+++.+.|+++  .+.... + 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  315 (393)
T 3kgw_A          238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDP  315 (393)
T ss_dssp             CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSG
T ss_pred             CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCh
Confidence                                  12345678888888899988765   456788888888888888876  332221 1 


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      ....+.++.+.+.+.        ....++.+.|+++ ||++.+
T Consensus       316 ~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~  350 (393)
T 3kgw_A          316 EIRLPTITTVTVPAG--------YNWRDIVSYVLDHFSIEISG  350 (393)
T ss_dssp             GGBCSSEEEEECCTT--------BCHHHHHHHHHHHHCEECBC
T ss_pred             hhcCCeEEEEeCCCC--------CCHHHHHHHHHHhCCEEEeC
Confidence            122356666776321        1145788899988 999875

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.88  E-value=6.2e-23  Score=209.13  Aligned_cols=312  Identities=13%  Similarity=0.052  Sum_probs=201.8

Q ss_pred             EEEecCCcccccCCCCCHHHHHHH--HHHHHhcccccccccc-hHHHHHHHHHHHhCCCCCceEEEcCCHHHHH--HHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSI--VNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAI  175 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~--~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~~~~v~~~~sGseA~--e~Ai  175 (447)
                      .|||..|.....+...++.+.+++  .+++.........|.. ....+|++.|+++++.+.++|++++++++++  +.++
T Consensus        35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~  114 (427)
T 3ppl_A           35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS  114 (427)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred             eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence            578877665443332233465555  4444432222234443 4567899999998877778999999999999  5777


Q ss_pred             HHHHhh-cC---------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          176 MMARLY-TG---------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       176 k~ar~~-t~---------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      +..... ++         ++.|++.+++|++........             |...+..|....   +.|    .++|++
T Consensus       115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~---g~d----~~~l~~  174 (427)
T 3ppl_A          115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-------------GFEMISVPMNED---GPD----MDAVEE  174 (427)
T ss_dssp             HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT-------------TCEEEEEEEETT---EEC----HHHHHH
T ss_pred             HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc-------------CCEEEEeCCCCC---CCC----HHHHHH
Confidence            765432 21         688999999999876554433             222222221111   123    567777


Q ss_pred             HHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHH-HHhCCEEEEeccccCccccCCC-----cccc----cccC
Q 013235          246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTGSH-----FWGF----EAHG  314 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tGfgr~G~~-----~~~~----~~~g  314 (447)
                      .+.   ..++.+|+++| .++++|.+. +.+.+++|.++| ++||+++|+||+|+++...+..     ++.+    +..+
T Consensus       175 ~l~---~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (427)
T 3ppl_A          175 LVK---NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN  250 (427)
T ss_dssp             HTT---STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT
T ss_pred             HHh---cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC
Confidence            763   23678888887 667788776 566799999999 9999999999999985443311     1111    1334


Q ss_pred             CCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHH
Q 013235          315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI---QK--DKLQNNAHVVGSYLKE  389 (447)
Q Consensus       315 v~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i---~~--~~l~~~~~~~g~~l~~  389 (447)
                      ...++.+|||.+++|+++|++++++++++.+.......+++.+++++.++.+.|+..   ++  .+..+.+++..+.+.+
T Consensus       251 ~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (427)
T 3ppl_A          251 RFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE  330 (427)
T ss_dssp             SEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            455666899997789999999999999988876555678889999999888877531   11  1122333334444444


Q ss_pred             HHHHHHHhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          390 RLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       390 ~L~~l~~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .|.+.....+.+. ..+..|+++++++...         ...++.+.|.++||++.+
T Consensus       331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~  378 (427)
T 3ppl_A          331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTG  378 (427)
T ss_dssp             HHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCC
T ss_pred             HHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEec
Confidence            4444322222222 2344589999988421         135678889999999975

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.88  E-value=1.4e-21  Score=193.55  Aligned_cols=297  Identities=14%  Similarity=0.086  Sum_probs=197.9

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~a  178 (447)
                      ++||..|    +++ .+|+|.+|+.+++   .|....+.++...+++++|+++++..  .+.++|++||++|++.+++.+
T Consensus         5 ~~~~~~g----p~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~   76 (366)
T 1m32_A            5 YLLLTPG----PLT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA   76 (366)
T ss_dssp             CEECSSS----SCC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred             cccccCC----CcC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence            5787766    334 7899999987753   23211122266788999999988621  247999999999999999977


Q ss_pred             HhhcCCCeEEEEcCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      +.  ++++|++.++.||+.... .....+.          .+..++...    .+..|    .++|++.+...  .++.+
T Consensus        77 ~~--~gd~vi~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~--~~~~~  134 (366)
T 1m32_A           77 LG--PQDKVLIVSNGAYGARMVEMAGLMGI----------AHHAYDCGE----VARPD----VQAIDAILNAD--PTISH  134 (366)
T ss_dssp             CC--TTCCEEEEESSHHHHHHHHHHHHHTC----------CEEEEECCT----TSCCC----HHHHHHHHHHC--TTCCE
T ss_pred             cC--CCCeEEEEeCCCccHHHHHHHHHhCC----------ceEEEeCCC----CCCCC----HHHHHHHHhcC--CCeEE
Confidence            42  556788888888875322 1111111          223333221    12234    56788777642  13455


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCcccccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAV  335 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav  335 (447)
                      |++...++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +..+.  ..+|+++  ++|.++++.++|++
T Consensus       135 v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~~K~~~~~~g~G~~  204 (366)
T 1m32_A          135 IAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA--LHIDYLISSANKCIQGVPGFAFV  204 (366)
T ss_dssp             EEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT--TTCSEEEEESSSTTCCCSSEEEE
T ss_pred             EEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---ccccc--cCccEEEecCcccccCCCceEEE
Confidence            656666667888876    9999999999999999999996 44332   12222  2478885  67999877778999


Q ss_pred             ccCHHHHHhhcCCc--c----------------cccCCCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Q 013235          336 VTTPEIAEVLTRRN--Y----------------FNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       336 ~~~~~i~~~l~~~~--~----------------~~T~~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~  393 (447)
                      ++++++++.+....  +                ...++.|+.+++++.++|+.+++.    ++.++.+++.+++.+.|++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~  284 (366)
T 1m32_A          205 IAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA  284 (366)
T ss_dssp             EEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH
Confidence            99999887765421  0                013678899999999999887654    4677888888888888877


Q ss_pred             HHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          394 LKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +  .+...... ...|+++++++.+...      ....++.+.|.++||++.+
T Consensus       285 ~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~  329 (366)
T 1m32_A          285 L--GFNTLLDDELHSPIITAFYSPEDPQ------YRFSEFYRRLKEQGFVIYP  329 (366)
T ss_dssp             T--TCCBSSCGGGBCSSEEEEECCCCTT------CCHHHHHHHHHHTTEECEE
T ss_pred             C--CCeeccCchhcCceEEEEEcCccCC------CCHHHHHHHHHHCCEEEEC
Confidence            5  33322211 1246788888742000      1145788999999999865

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.88  E-value=5.6e-21  Score=192.77  Aligned_cols=303  Identities=16%  Similarity=0.071  Sum_probs=198.3

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-ccccc-----cchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~~-----~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      ++..|||+.++.      +.+|+|.+|+.++++.... ....|     ..+...+++++|+++++.+.+.|+|++||+++
T Consensus        25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   98 (406)
T 3cai_A           25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL   98 (406)
T ss_dssp             SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred             CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence            357889987543      4789999999999986421 11122     24567889999999987666789999999999


Q ss_pred             HHHHHHHH-HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          171 NELAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       171 ~e~Aik~a-r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ++.+++.. +...+++.|++..++|++.......+....       ...+..++.. +.  .+..|    .++|++.+. 
T Consensus        99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-------g~~v~~v~~~-~~--~~~~d----~~~l~~~l~-  163 (406)
T 3cai_A           99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRY-------GAKVKWAEVD-IE--TGELP----TWQWESLIS-  163 (406)
T ss_dssp             HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHH-------BCEEEEECCC-TT--TCCCC----GGGHHHHCC-
T ss_pred             HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhc-------CCeEEEEecC-cc--cCCcC----HHHHHHHhC-
Confidence            99998854 234466889999999987654433221000       0012223221 01  11123    456666653 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eecccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIG  327 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg  327 (447)
                         .++++|+++++++++|.+.+    +++|.++|+++|+++|+||+|+ +|..   .+..+.++  +|+++  ++|.+|
T Consensus       164 ---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~--~d~~~~s~~K~~g  230 (406)
T 3cai_A          164 ---KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR---LLDIRETD--ADVVTVNAHAWGG  230 (406)
T ss_dssp             ---TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC---CCCHHHHC--CSEEEEEGGGGTS
T ss_pred             ---CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---CCCchhcC--CCEEEeehhhhcC
Confidence               26789999999999998876    8999999999999999999996 3322   12233344  68876  469775


Q ss_pred             CCcccc-ccccCHHHHHhhcCCcc---------cccCCCChHHHHHHHHHHHHHhh-----------------hhHHHHH
Q 013235          328 NGIPLG-AVVTTPEIAEVLTRRNY---------FNTFGGNPVCTAAGHAVLKVIQK-----------------DKLQNNA  380 (447)
Q Consensus       328 ~G~pig-av~~~~~i~~~l~~~~~---------~~T~~~np~a~aaala~L~~i~~-----------------~~l~~~~  380 (447)
                      .+  +| ++++++++++.+....+         +..+..|+.+++++.++|+.+++                 +++.++.
T Consensus       231 ~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  308 (406)
T 3cai_A          231 PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYL  308 (406)
T ss_dssp             CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred             CC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHH
Confidence            43  89 99999999887765321         11344578888888888887764                 2345556


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.+++.+.|+++. .+.......+.+.++.+.+...         ...++.+.|.++||++..
T Consensus       309 ~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gi~v~~  363 (406)
T 3cai_A          309 NRVFDYLMVSLRSLP-LVMLIGRPEAQIPVVSFAVHKV---------PADRVVQRLADNGILAIA  363 (406)
T ss_dssp             HHHHHHHHHHHHTCT-TEEECCCCSSBCSEEEEEETTB---------CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHhcCC-CeEEcCCccccCCEEEEEECCc---------CHHHHHHHHHHCCcEEec
Confidence            666666666665531 1111111112345777776310         135688889999999875

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.87  E-value=4.2e-22  Score=203.77  Aligned_cols=319  Identities=12%  Similarity=0.053  Sum_probs=192.7

Q ss_pred             CeEE-EecCCcccccCCCCCHHHHHHHHHHHHhcccc-------c------cccc-chHHHHHHHHHHHhC------CCC
Q 013235           99 RRYL-DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-------T------VLYL-NHAIADFAEALASKM------PGN  157 (447)
Q Consensus        99 ~~yl-D~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-------~------~~~~-~~~~~elae~L~~~~------~~~  157 (447)
                      ..+| ||..|...     ..|.+.+++.+++.+....       .      ..|. .....+|+++|++++      +.+
T Consensus        31 ~~~i~~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~  105 (444)
T 3if2_A           31 DQPVNMLGGGNPA-----KIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT  105 (444)
T ss_dssp             SSCCEECSCCCCC-----CCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             chhhhccCCCCCC-----cccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence            3466 77665442     1466666666665543221       1      1233 223456666666665      445


Q ss_pred             CceEEEcCCHHHHHHHHHHHHHhhcCCC--------------eEEEE-cCCcccCchhhhhccCCCCccccccCCCeEee
Q 013235          158 LKVVFFTNSGTEANELAIMMARLYTGCN--------------DIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA  222 (447)
Q Consensus       158 ~~~v~~~~sGseA~e~Aik~ar~~t~~~--------------~ii~~-~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~  222 (447)
                      .++|+|++||++|++.+++....  .++              .||+. .++|++..........       ....+...+
T Consensus       106 ~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~  176 (444)
T 3if2_A          106 SENIALTNGSQNAFFYLFNLFGG--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH-------FAAVLPHID  176 (444)
T ss_dssp             GGGEEEESSHHHHHHHHHHHSSE--EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC-------EEECCCEEE
T ss_pred             HHHEEEecCcHHHHHHHHHHHhC--CCccccccccccccccceEEEeCCCCccchhhcccccch-------hhccCceEE
Confidence            68899999999999999987642  222              46554 8899877654321100       001122222


Q ss_pred             cCCCCc-CC--CCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC
Q 013235          223 LNPDPY-RG--VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (447)
Q Consensus       223 ~~p~~~-~~--~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG  299 (447)
                      +.|... .+  .|+.|    .++|++.+....+ ++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|..
T Consensus       177 ~~~~~~~~g~~~~~~d----~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~  250 (444)
T 3if2_A          177 EVTHDGEEGFFKYRVD----FEALENLPALKEG-RIGAICCSRPTNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGM  250 (444)
T ss_dssp             EEEETTEEEEEEEECC----HHHHHTCHHHHTT-CEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred             ecccccccCccccCCC----HHHHHHHHHhcCC-CceEEEeCCCCCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            222100 00  12234    5667665432223 566666655567788765 677899999999999999999999964


Q ss_pred             ccccCCCcccc--cccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh---
Q 013235          300 FARTGSHFWGF--EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---  374 (447)
Q Consensus       300 fgr~G~~~~~~--~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~---  374 (447)
                      +. .+..+...  ...+...++.+++|.+.+|+++|++++++++++.+....+..+++.++++++++.+.|+..+-.   
T Consensus       251 ~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  329 (444)
T 3if2_A          251 PF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLS  329 (444)
T ss_dssp             TT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHH
T ss_pred             cc-cccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHH
Confidence            31 11011111  1233444566899986679999999999999998876556678889999999998888642211   


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          375 --KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       375 --~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                        .+.++++++.+.+.+.|.+.....++....+..|+++++++....       ....++.+.|.++||++.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~  395 (444)
T 3if2_A          330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVP  395 (444)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEec
Confidence              133344445555555555433222222223466899999884311       0145688889999999874

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.87  E-value=5.5e-21  Score=190.71  Aligned_cols=284  Identities=15%  Similarity=0.119  Sum_probs=193.8

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC--ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~  193 (447)
                      .+|+|.+|+.+++...  . .....+...+++++|++.++.+.  ++++|++||++|++ +++.+  ..++++|++.+++
T Consensus        13 ~~~~v~~a~~~~~~~~--~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~~~~   86 (384)
T 3zrp_A           13 IKEDVLVAGLENNVGF--T-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVVSNG   86 (384)
T ss_dssp             CCHHHHHHTTCCSCCT--T-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEECSS
T ss_pred             CCHHHHHHhhcccccc--c-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEecCC
Confidence            5789988887765321  1 11235667889999999987665  78999999999999 88644  4567889999999


Q ss_pred             cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      ||+.....+...           .|...+..|....  +..|    .+++++.+...   ++++|+++++++++|.+.+ 
T Consensus        87 ~~~~~~~~~~~~-----------~g~~~~~v~~~~~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~-  145 (384)
T 3zrp_A           87 VFGDRWEQIFKR-----------YPVNVKVLRPSPG--DYVK----PGEVEEEVRKS---EYKLVALTHVETSTGVREP-  145 (384)
T ss_dssp             HHHHHHHHHHTT-----------SSCEEEEECCSTT--CCCC----HHHHHHHHHHS---CEEEEEEESEETTTTEECC-
T ss_pred             cchHHHHHHHHH-----------cCCcEEEecCCCC--CCCC----HHHHHHHHHhC---CCcEEEEeCCCCCCceECc-
Confidence            998543322110           1222222222211  1234    67788887642   5789999999999998886 


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhh-cCC--
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVL-TRR--  348 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l-~~~--  348 (447)
                         +++|.++|++||+++|+||+|+ ++..   .+..+.  ..+|+++++  |.++++.++|++++++++++.+ ...  
T Consensus       146 ---l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~  216 (384)
T 3zrp_A          146 ---VKDVINKIRKYVELIVVDGVSS-VGAE---EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI  216 (384)
T ss_dssp             ---HHHHHHHHGGGEEEEEEECTTT-TTTS---CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred             ---HHHHHHHHHhcCCEEEEECccc-ccCc---cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence               9999999999999999999996 3221   111222  346888766  9998777899999999998776 110  


Q ss_pred             ---------------c----ccccC-CCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-
Q 013235          349 ---------------N----YFNTF-GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDV-  404 (447)
Q Consensus       349 ---------------~----~~~T~-~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-  404 (447)
                                     .    ....+ +.|+.++++..++|+.+++.   ++.++.+++.+++.+.|+++  .+...... 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  294 (384)
T 3zrp_A          217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRP  294 (384)
T ss_dssp             CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSG
T ss_pred             CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcc
Confidence                           0    11223 44666777777888877654   56788888888888888876  33322211 


Q ss_pred             -eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          405 -RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       405 -rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                       ...+.++.+.+...         ...++.+.|+++||++.+.
T Consensus       295 ~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g  328 (384)
T 3zrp_A          295 ESYSNTVTGVILKVA---------DPQKVLAGTVNEGVEFAPG  328 (384)
T ss_dssp             GGBCSSEEEEECSSS---------CHHHHHHHHHTTTCCCEEC
T ss_pred             cccCccEEEEECCCC---------CHHHHHHHHHHCCEEEecC
Confidence             22466777776321         1467899999999998753

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.87  E-value=1e-21  Score=198.93  Aligned_cols=315  Identities=11%  Similarity=0.001  Sum_probs=188.5

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc------ccccccc-chHHHHHHHHHHHhC------CCCCceEEEcC
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTN  165 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~------~~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~  165 (447)
                      ..++||..|....     .|.+.+++.+++.+..      .....|. .....+|++.|++++      +.+.++|+|++
T Consensus        31 ~~~i~l~~g~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~  105 (417)
T 3g7q_A           31 PGAIMLGGGNPAH-----IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN  105 (417)
T ss_dssp             -CCEECSCCCCCC-----CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred             CCceEecCcCCCC-----CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence            4578887765421     3555555555444321      0011233 334567777777765      45567899999


Q ss_pred             CHHHHHHHHHHHHHhhc---CCCeEEEE-cCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHH
Q 013235          166 SGTEANELAIMMARLYT---GCNDIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK  241 (447)
Q Consensus       166 sGseA~e~Aik~ar~~t---~~~~ii~~-~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~  241 (447)
                      ||++|++.+++......   ++++|++. .++||+....+......     .  ..+....+.+.. ...|..|    .+
T Consensus       106 G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~-~~~~~~d----~~  173 (417)
T 3g7q_A          106 GSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLF-----V--SARPNIELLPEG-QFKYHVD----FE  173 (417)
T ss_dssp             CHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCE-----E--ECCCEEEEEGGG-EEEEECC----GG
T ss_pred             CcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhh-----c--cccCcccccCCc-ccccccC----HH
Confidence            99999999999775321   11277776 99999876554322110     0  001111111110 0011123    23


Q ss_pred             HHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc--cccCCCCCE
Q 013235          242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF--EAHGVVPDI  319 (447)
Q Consensus       242 ~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~--~~~gv~pDi  319 (447)
                      +++  +    ..++.+++++..++++|.+. +++.+++|.++|++||+++|+||+|..+. .+..+...  ...+....+
T Consensus       174 ~l~--~----~~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~  245 (417)
T 3g7q_A          174 HLH--I----GEETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVPF-PGIIFSEARPLWNPNIILC  245 (417)
T ss_dssp             GCC--C----CTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEE
T ss_pred             Hhc--c----ccCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCcccc-ccccccccccCCCCCEEEE
Confidence            343  1    23567777776678888776 67779999999999999999999996532 12111111  112222335


Q ss_pred             EEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHH
Q 013235          320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       320 vt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      .++||...+|+|+|++++++++++.+....+..+++.++++++++.+.|+..+-     +.+.++++++.+.+.+.|.+.
T Consensus       246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (417)
T 3g7q_A          246 MSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY  325 (417)
T ss_dssp             EESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689996557999999999999999887655667888899999999888863211     113344455555666666554


Q ss_pred             HHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       395 ~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..+.++....+..|+++++++....       ....++.+.|.++||++.+
T Consensus       326 l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~  369 (417)
T 3g7q_A          326 LSEERCLIHKPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVP  369 (417)
T ss_dssp             CCTTTCEEECCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEE
T ss_pred             cccCCceeeCCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEEC
Confidence            3322232233566889998884311       0135688889999999874

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.87  E-value=5e-21  Score=193.37  Aligned_cols=260  Identities=16%  Similarity=0.034  Sum_probs=183.4

Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~  212 (447)
                      |...++.++...+|+++|+++++.  +.+++++||++|++.+++.+  ..++++|++.+++||+.........       
T Consensus        58 ~~y~r~~~~~~~~l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~-------  126 (392)
T 3qhx_A           58 YEYARTGNPTRTALEAALAAVEDA--AFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVF-------  126 (392)
T ss_dssp             BCBTTTCCHHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTG-------
T ss_pred             ccccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHH-------
Confidence            344556788889999999999864  46889999999999999866  3366899999999987544331110       


Q ss_pred             cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                        ...|+.....|.       +|    .+++++.+.    +++++|++|++++++|.+.+    +++|.++|++||+++|
T Consensus       127 --~~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li  185 (392)
T 3qhx_A          127 --TGWNVEYTPVAL-------AD----LDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVL  185 (392)
T ss_dssp             --GGGTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred             --HhcCcEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEE
Confidence              011332222221       13    567777664    37899999999999999876    9999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~  367 (447)
                      +||+|+.+ .      ..+..+..+|+++  ++|.+++ | +++|+++++ +++++.+....+..++..+|+.+++++..
T Consensus       186 ~D~~~~~~-~------~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  258 (392)
T 3qhx_A          186 VDNTFASP-A------LQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRG  258 (392)
T ss_dssp             EECTTTCT-T------TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             EECCCccc-c------cCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence            99999632 1      1233345679987  8899996 4 789999987 68887776544556777889999998888


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEeeCCCCCCCCHHHH
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAET  429 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~  429 (447)
                      |+.++.  ..++..++.+++.+.|+    +++.+..|                  +|.|.|++|++..+       ...+
T Consensus       259 l~~l~~--~~~~~~~~~~~l~~~L~----~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-------~~~~  325 (392)
T 3qhx_A          259 LKTLVL--RMQRHSENAAAVAEFLA----EHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-------RTAA  325 (392)
T ss_dssp             HTTHHH--HHHHHHHHHHHHHHHHH----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-------HHHH
T ss_pred             hhHHHH--HHHHHHHHHHHHHHHHh----cCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-------HHHH
Confidence            865432  23444555555555554    34445444                  67799999999431       2345


Q ss_pred             HHHHHHHHhCCceee
Q 013235          430 LYIMDKMKGICALFF  444 (447)
Q Consensus       430 ~~~~~~l~~~Gvlv~  444 (447)
                      .++.+.|...|+.+.
T Consensus       326 ~~~~~~l~~~~~~~s  340 (392)
T 3qhx_A          326 EQLCAKTNIFILAES  340 (392)
T ss_dssp             HHHHHHCSSSEECSC
T ss_pred             HHHHHhCCCceECCC
Confidence            677777776666543

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.87  E-value=2.5e-21  Score=195.39  Aligned_cols=285  Identities=13%  Similarity=0.105  Sum_probs=192.8

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCce-EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV-VFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~-v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      .+|+|.+|+.+++  ..|.... ......+++++|++.++.+.+. +++++||++|++.+++.+  ..++++|++.+++|
T Consensus        24 ~~~~v~~a~~~~~--~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~   98 (411)
T 3nnk_A           24 ADPRVLRAMSSQL--IGQYDPA-MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR   98 (411)
T ss_dssp             CCHHHHHHHTSCC--CCTTCHH-HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred             CCHHHHHHhhccc--cccccHH-HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence            5789998887654  2222111 2355678999999988755444 789999999999999977  34778999999999


Q ss_pred             ccCchhh-hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          195 HGNAAGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       195 HG~~~~~-~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      |+..... ....+          ..+..++.+.    .+..|    .++|++.+...   ++++|+++++++++|.+.+ 
T Consensus        99 ~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~-  156 (411)
T 3nnk_A           99 FGHLLCEIARRCR----------AEVHTIEVPW----GEVFT----PDQVEDAVKRI---RPRLLLTVQGDTSTTMLQP-  156 (411)
T ss_dssp             HHHHHHHHHHHTT----------CEEEEEECCT----TCCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred             hHHHHHHHHHHcC----------CeEEEEecCC----CCCCC----HHHHHHHHhhC---CCeEEEEeCCCCCcceecc-
Confidence            9843211 11111          0122333221    11224    57777777642   5678899999999999876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcCCc--
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTRRN--  349 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~~~--  349 (447)
                         +++|.++|++||+++|+||+++ +|.   ..+..+.++  +|++++  +|.++++.++|++++++++++.+....  
T Consensus       157 ---l~~i~~l~~~~~~~li~Dea~~-~~~---~~~~~~~~~--~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~  227 (411)
T 3nnk_A          157 ---LAELGEICRRYDALFYTDATAS-LGG---NPLETDVWG--LDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCV  227 (411)
T ss_dssp             ---CTTHHHHHHHHTCEEEEECTTT-BTT---BCCCTTTTT--CSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCC
T ss_pred             ---HHHHHHHHHHcCCEEEEECCcc-cCC---cccchhccC--CcEEEecCccccCCCCceEEEEECHHHHHHHhhcccc
Confidence               8899999999999999999986 332   122233333  577765  498887778999999999988775421  


Q ss_pred             ----------------------------------ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Q 013235          350 ----------------------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLT  392 (447)
Q Consensus       350 ----------------------------------~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~  392 (447)
                                                        ...+++.|+.+++++.++|+.+.++   ++.++.+++.+++.+.|+
T Consensus       228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~  307 (411)
T 3nnk_A          228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQ  307 (411)
T ss_dssp             CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence                                              1122445788888888889887654   567788888888888888


Q ss_pred             HHHHhcCCeee-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          393 ALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       393 ~l~~~~~~i~~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                      ++  ....... ....+.++.+.+.+.        ....++.+.|+++ ||+++++
T Consensus       308 ~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g  353 (411)
T 3nnk_A          308 AM--GLETFGDLKHKMNNVLGVVIPQG--------INGDQARKLMLEDFGIEIGTS  353 (411)
T ss_dssp             HT--TCCBCSCGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHSEEEEEC
T ss_pred             Hc--CCEeCCCcccccccEEEEECCCC--------CCHHHHHHHHHHhcCeEEeCc
Confidence            75  3322211 123467777776321        1145788888887 9998754

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.87  E-value=2.4e-21  Score=191.54  Aligned_cols=290  Identities=11%  Similarity=0.001  Sum_probs=188.5

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHh
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL  180 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~  180 (447)
                      ++||.++.    .|+.+|+|.+|+.+++..+  ....+..+...+++++|++.++.+.++++|++||++|++.+++.++.
T Consensus        15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~   88 (359)
T 1svv_A           15 PYSFVNDY----SVGMHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR   88 (359)
T ss_dssp             CEECSCSC----SSCCCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred             eEEecCCC----cCCCCHHHHHHHHHHHhhc--cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence            56766533    4689999999999988753  22345577888999999998876677899999999999999998754


Q ss_pred             hcCCCeEEEEcCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc---CCCCeE
Q 013235          181 YTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVA  256 (447)
Q Consensus       181 ~t~~~~ii~~~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~---~~~~~a  256 (447)
                        ++++|++.+++||+.... .+...+          ..+..++..     .+..|    .++|++.+...   ...+++
T Consensus        89 --~gd~vl~~~~~~~~~~~~~~~~~~g----------~~~~~v~~~-----~~~~d----~~~l~~~l~~~~~~~~~~~~  147 (359)
T 1svv_A           89 --PWEAVIATQLGHISTHETGAIEATG----------HKVVTAPCP-----DGKLR----VADIESALHENRSEHMVIPK  147 (359)
T ss_dssp             --TTEEEEEETTSHHHHSSTTHHHHTT----------CCEEEECCT-----TSCCC----HHHHHHHHHHSCSTTSCEEE
T ss_pred             --CCCEEEEcccchHHHHHHHHHhcCC----------CeeEEEeCC-----CCeec----HHHHHHHHHHHHhccCCCce
Confidence              567899999999987653 111111          122333321     23334    56777777642   112478


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc--cccCCCcccccccC--CCCCEEEe--eccccCCc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHG--VVPDIVTM--AKGIGNGI  330 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf--gr~G~~~~~~~~~g--v~pDivt~--sK~lg~G~  330 (447)
                      +|++++. +++|.+. |++++++|.++|++||+++|+||+|.+|  |+.+. .  ....+  ..+|++++  .|. ++..
T Consensus       148 ~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~--~~~~~~~~~~d~~~~s~~K~-g~~~  221 (359)
T 1svv_A          148 LVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVN-D--LTLADIARLTDMFYIGATKA-GGMF  221 (359)
T ss_dssp             EEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-C--CCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred             EEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-c--hhhhhhhhcCCEEEEecccC-CCCC
Confidence            8888887 5678766 4699999999999999999999999766  44441 1  12111  35788876  463 3234


Q ss_pred             cccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          331 PLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       331 pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                      .+|+++.++++++.+....  +..++..++...++..+.   +++   +++.++++++.+++.+.| +. ..+..+.  .
T Consensus       222 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~~--~  294 (359)
T 1svv_A          222 GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLAW--P  294 (359)
T ss_dssp             CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBSS--C
T ss_pred             ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEcc--C
Confidence            5688888988876654321  223333232222322222   333   346677888888888888 43 2332221  2


Q ss_pred             ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Ccee
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALF  443 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv  443 (447)
                      ..+.++.+.+.             .++.+.|+++ ||++
T Consensus       295 ~~~~~~~~~~~-------------~~~~~~l~~~~gi~v  320 (359)
T 1svv_A          295 SASNQLFPILE-------------NTMIAELNNDFDMYT  320 (359)
T ss_dssp             CSSSEECBEEE-------------HHHHHHHTTTEECEE
T ss_pred             CccceEEEEcC-------------HHHHHHHHHhcCEEE
Confidence            23455555541             3688899999 9987

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.87  E-value=8.2e-21  Score=190.50  Aligned_cols=297  Identities=12%  Similarity=0.047  Sum_probs=200.2

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      ...|||..+      .++.+|.|.+|+.+++..  +. .....+...+++++|+++++.+.+++++++||++|++.+++.
T Consensus         8 ~~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~   78 (392)
T 2z9v_A            8 DPVITLTAG------PVNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS   78 (392)
T ss_dssp             CCSEECSSS------CCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred             CcceeecCC------CcCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence            446888642      246889999998876653  21 111244677899999999976667899999999999999987


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      +  ..++++|++.+++||+.....+ ...+.          .+..++.+.  .  +..|    .++|++.+++.  .+++
T Consensus        79 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~l~~~--~~~~  136 (392)
T 2z9v_A           79 L--ISPDDVVLNLASGVYGKGFGYWAKRYSP----------HLLEIEVPY--N--EAID----PQAVADMLKAH--PEIT  136 (392)
T ss_dssp             H--CCTTCCEEEEESSHHHHHHHHHHHHHCS----------CEEEEECCT--T--SCCC----HHHHHHHHHHC--TTCC
T ss_pred             h--cCCCCEEEEecCCcccHHHHHHHHHcCC----------ceEEeeCCC--C--CCCC----HHHHHHHHhcC--CCCc
Confidence            6  3456789999999998631111 11111          233333221  1  1134    56777777531  2567


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGA  334 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~piga  334 (447)
                      +|++++.++++|.+.+    +++|.++|++||+++|+||+|+ +|..   .+..+.+  .+|++++  +|.++++.++|+
T Consensus       137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~--~~d~~~~s~sK~~~~~~g~G~  206 (392)
T 2z9v_A          137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM---KTHPEDC--KADIYVTGPNKCLGAPPGLTM  206 (392)
T ss_dssp             EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB---SCCGGGG--TCSEEEECSSSTTCCCSCCEE
T ss_pred             EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc---ccccccc--cceEEEecCcccccCCCceeE
Confidence            8899999999998876    8999999999999999999996 4322   1222323  4788875  598887666799


Q ss_pred             cccCHHHHHhhcCC--------------------cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 013235          335 VVTTPEIAEVLTRR--------------------NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL  391 (447)
Q Consensus       335 v~~~~~i~~~l~~~--------------------~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L  391 (447)
                      +++++++++.+...                    ....++..|+.+++++.++|+.+++.   ++.++.+++.+++++.|
T Consensus       207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L  286 (392)
T 2z9v_A          207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV  286 (392)
T ss_dssp             EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99999988766421                    01123345677777777888877553   46777888888888888


Q ss_pred             HHHHHhcCCee-e-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          392 TALKDKYGIIG-D-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       392 ~~l~~~~~~i~-~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      +++  .+.... . ....+.++.+.+.+.        ....++.+.|.++ ||++.+
T Consensus       287 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~  333 (392)
T 2z9v_A          287 TAM--GLSVWAASDSIASPTTTAVRTPDG--------VDEKALRQAARARYGVVFSS  333 (392)
T ss_dssp             HHT--TCCBSSSSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEE
T ss_pred             HHc--CCeeccCCccccCCceEEEECCCC--------CCHHHHHHHHHhcCCEEEec
Confidence            775  333222 1 012467777776311        0135788899998 999865

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.86  E-value=4.6e-21  Score=191.39  Aligned_cols=284  Identities=15%  Similarity=0.103  Sum_probs=182.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      .+++++|.+.+++.+++.+.......++.+...+++++|+++++.  +.+++++||++|++.|++.++ ..++++|++..
T Consensus         6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~   82 (367)
T 3nyt_A            6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGA--KYCISCANGTDALQIVQMALG-VGPGDEVITPG   82 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEES
T ss_pred             cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECC
Confidence            456666555555555444332212334577889999999999854  478999999999999999774 33567899999


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      .+|++........             |...+..+... ..+..|    .+++++.+.    +++++|++++   ..|...
T Consensus        83 ~~~~~~~~~~~~~-------------G~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~  137 (367)
T 3nyt_A           83 FTYVATAETVALL-------------GAKPVYVDIDP-RTYNLD----PQLLEAAIT----PRTKAIIPVS---LYGQCA  137 (367)
T ss_dssp             SSCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----GGGTGGGCC----TTEEEECCBC---GGGCCC
T ss_pred             CccHHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHhcC----cCCcEEEeeC---CccChh
Confidence            9998766554332             22222211111 012224    345555542    3677887443   345443


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee----ccccC-Ccccccccc-CHHHHHh
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVT-TPEIAEV  344 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pigav~~-~~~i~~~  344 (447)
                          .+++|.++|++||+++|+||+|+ |+...|      ...+...|++++|    |.+++ |. .|++++ ++++++.
T Consensus       138 ----~~~~i~~la~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~  206 (367)
T 3nyt_A          138 ----DFDAINAIASKYGIPVIEDAAQSFGASYKG------KRSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATA  206 (367)
T ss_dssp             ----CHHHHHHHHHHTTCCBEEECTTTTTCEETT------EETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHH
T ss_pred             ----hHHHHHHHHHHcCCEEEEECccccCCeECC------eeccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHH
Confidence                39999999999999999999996 332233      2233344999987    99998 76 777777 5777766


Q ss_pred             hcCCc-c-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeecceeE
Q 013235          345 LTRRN-Y-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLL  411 (447)
Q Consensus       345 l~~~~-~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~Gl~~  411 (447)
                      +.... +           +.++..+++.++++++.|+.+  +++.++.+++.+++++.|.++.-..+... .......++
T Consensus       207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  284 (367)
T 3nyt_A          207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQY  284 (367)
T ss_dssp             HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSE
T ss_pred             HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEE
Confidence            54311 1           246788999999999998866  34667788888899998887621111111 111112233


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeeccC
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY  447 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~~  447 (447)
                      .+.+.           ...++.+.|.++||.++..|
T Consensus       285 ~~~~~-----------~~~~l~~~L~~~GI~~~~~~  309 (367)
T 3nyt_A          285 TVRMD-----------NRESVQASLKAAGVPTAVHY  309 (367)
T ss_dssp             EEECS-----------SHHHHHHHHHHHTCCCBCSC
T ss_pred             EEEeC-----------CHHHHHHHHHHCCCceeccC
Confidence            33331           14578899999999887543

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.86  E-value=7.5e-21  Score=189.70  Aligned_cols=288  Identities=13%  Similarity=0.024  Sum_probs=178.1

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC--ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~  193 (447)
                      .+|+|.+|+.+++..  |... ...+...+++++|++.++.+.  +.+++++||++|++.+++.+.  .++++||+.+++
T Consensus        30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--~~gd~vi~~~~~  104 (376)
T 3f0h_A           30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--TKKDKVLVIDGG  104 (376)
T ss_dssp             CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--CTTCCEEEEESS
T ss_pred             CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--CCCCeEEEEeCC
Confidence            578999888776532  2211 123566788889998875432  456669999999999998764  367889999999


Q ss_pred             cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      ||+..........         ...+..++.+.    .+..|    .+++++.+.    .++++|+++++++++|.+.+ 
T Consensus       105 ~~~~~~~~~~~~~---------g~~~~~v~~~~----~~~~d----~~~l~~~~~----~~~~~v~~~~~~nptG~~~~-  162 (376)
T 3f0h_A          105 SFGHRFVQLCEIH---------EIPYVALKLEH----GKKLT----KEKLYEYDN----QNFTGLLVNVDETSTAVLYD-  162 (376)
T ss_dssp             HHHHHHHHHHHHT---------TCCEEEEECCT----TCCCC----HHHHHTTTT----SCCCEEEEESEETTTTEECC-
T ss_pred             hhhHHHHHHHHHc---------CCceEEEeCCC----CCCCC----HHHHHHhhc----cCceEEEEecccCCcceecC-
Confidence            9885432111110         01223333321    12234    456665432    36778999988999999886 


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcc---
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY---  350 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~---  350 (447)
                         +++|.++|++||+++|+||+|+++++.    +..+.+++...+.+++|.++++.++|++++++++++.+.....   
T Consensus       163 ---l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~  235 (376)
T 3f0h_A          163 ---TMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTM  235 (376)
T ss_dssp             ---HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCS
T ss_pred             ---HHHHHHHHHHcCCEEEEEcCccccCcc----ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCce
Confidence               999999999999999999999865442    2344555533333456999876778999999999887764211   


Q ss_pred             --------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEE
Q 013235          351 --------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEF  415 (447)
Q Consensus       351 --------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel  415 (447)
                                    ...+..+..+++++.++++.+++++..++..+....+++.|.+..++.+..... ...+.++.+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~  315 (376)
T 3f0h_A          236 YFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHP  315 (376)
T ss_dssp             TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEE
T ss_pred             eecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeC
Confidence                          113344455557777888887665333333333344444444433333311100 11222333321


Q ss_pred             eeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          416 VTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       416 ~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                        +.       ....++.+.|+++ ||++.+.
T Consensus       316 --~~-------~~~~~l~~~l~~~~gi~v~~g  338 (376)
T 3f0h_A          316 --TT-------ANAYDIFLKLKDEYGIWICPN  338 (376)
T ss_dssp             --SS-------SCHHHHHHHHHHHSSEECEEC
T ss_pred             --CC-------CCHHHHHHHHHHhCCEEEecC
Confidence              11       1145788999998 9998754

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.86  E-value=5.8e-21  Score=188.15  Aligned_cols=280  Identities=14%  Similarity=0.058  Sum_probs=190.4

Q ss_pred             CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      .+|+|.+|+.+++..  |   .++  .+...+++++|+++++.+  .+.+++++||++|++.+++.+.   + ++|++.+
T Consensus        11 ~~~~v~~a~~~~~~~--~---~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~   81 (353)
T 2yrr_A           11 IPERVQKALLRPMRG--H---LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLV   81 (353)
T ss_dssp             CCHHHHGGGGSCCCC--T---TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEE
T ss_pred             CCHHHHHHHhccccc--c---cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEc
Confidence            679999998877654  2   222  345789999999998653  5689999999999999998654   3 7899999


Q ss_pred             CCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235          192 NAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (447)
Q Consensus       192 ~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~  270 (447)
                      ++||+.... .....+          ..+..++.+.    .+..|    .+++++.+...   ++++|++++.++++|.+
T Consensus        82 ~~~~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~  140 (353)
T 2yrr_A           82 NGAFSQRVAEMAALHG----------LDPEVLDFPP----GEPVD----PEAVARALKRR---RYRMVALVHGETSTGVL  140 (353)
T ss_dssp             CSHHHHHHHHHHHHTT----------CCEEEEECCT----TSCCC----HHHHHHHHHHS---CCSEEEEESEETTTTEE
T ss_pred             CCCchHHHHHHHHHcC----------CceEEEeCCC----CCCCC----HHHHHHHHHhC---CCCEEEEEccCCCccee
Confidence            999986111 111111          1233333221    12234    56777777642   45688888899999988


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcC-
Q 013235          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTR-  347 (447)
Q Consensus       271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~-  347 (447)
                      .+    +++|.++|++||+++|+||+| ++|...   ...+.+  .+|++++  +|.++++.++|++++++++++.+.. 
T Consensus       141 ~~----~~~i~~l~~~~~~~li~D~a~-~~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~  210 (353)
T 2yrr_A          141 NP----AEAIGALAKEAGALFFLDAVT-TLGMLP---FSMRAM--GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGK  210 (353)
T ss_dssp             CC----HHHHHHHHHHHTCEEEEECTT-TTTTSC---CCHHHH--TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCC
T ss_pred             cC----HHHHHHHHHHcCCeEEEEcCc-cccccc---cccccc--CceEEEecCcccccCCCceEEEEECHHHHHHhccC
Confidence            76    899999999999999999999 576442   223333  3688875  5988765568999999999877651 


Q ss_pred             C--------------cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235          348 R--------------NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (447)
Q Consensus       348 ~--------------~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~  410 (447)
                      .              ....+++.|+.+++++.++|+.++++   ++.++.+++.+++.+.|+++  .+.........+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~  288 (353)
T 2yrr_A          211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTV  288 (353)
T ss_dssp             SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTE
T ss_pred             CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeE
Confidence            0              11223455777888888888877554   45677888888888888775  33222111114556


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+++.+.        ....++.+.|.++||++.+
T Consensus       289 ~~~~~~~~--------~~~~~~~~~l~~~gi~v~~  315 (353)
T 2yrr_A          289 LVVRPPEG--------VDADRLVRALYAEGVAVAG  315 (353)
T ss_dssp             EEEECCTT--------CCHHHHHHHHHHTTEECEE
T ss_pred             EEEECCCC--------CCHHHHHHHHHHCCEEEeC
Confidence            67776211        0145788999999999874

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.86  E-value=1.8e-20  Score=192.50  Aligned_cols=308  Identities=13%  Similarity=0.042  Sum_probs=192.3

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      .|+.||||.++.++..+   .+++.+++.    .. . ......+...+|+++|+++++  .+.+++++||++|++.+++
T Consensus        40 ~~~~ylD~~~~~~~~~~---~~~~~~a~~----~~-~-~~y~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~al~  108 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNAM---SDKQWAGMM----MG-D-EAYAGSENFYHLERTVQELFG--FKHIVPTHQGRGAENLLSQ  108 (456)
T ss_dssp             GGGCSEECSCSSSCCCC---CHHHHHHHT----TC-C-CCSSSCHHHHHHHHHHHHHHC--CSEEEEESSHHHHHHHHHH
T ss_pred             cccceeeeccccCCccC---CHHHHHHhh----cc-h-hhcccChhHHHHHHHHHHHhC--CCcEEEeCCcHHHHHHHHH
Confidence            46789999988775432   466666654    21 1 112236678899999999985  4579999999999999998


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCC-----CCcCC-CCCCChHHHHHHHHHHHHcc
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP-----DPYRG-VFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p-----~~~~~-~~~~d~~~~~~~le~~i~~~  250 (447)
                      .+.   ++.+ |+..++||+.+..++...+..          +..++..     ..... .++.|    .++|++.+...
T Consensus       109 ~l~---~~gd-i~~~~~~~~~~~~~~~~~G~~----------~~~v~~~~~~~~~~~~~~~~~~d----~~~l~~~i~~~  170 (456)
T 2ez2_A          109 LAI---KPGQ-YVAGNMYFTTTRYHQEKNGAV----------FVDIVRDEAHDAGLNIAFKGDID----LKKLQKLIDEK  170 (456)
T ss_dssp             HHC---CTTC-EEEESSCCHHHHHHHHHTTCE----------EEECBCGGGGCTTCCCSCTTCBC----HHHHHHHHHHH
T ss_pred             HhC---CCCC-EeccccccchhHHHHHHcCCE----------EEEecccccccccccccccCCCC----HHHHHHHHHhc
Confidence            763   2333 788999988766555444321          1111110     00000 12334    56777777643


Q ss_pred             CCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----------ccccCCCcccc-cccCCCCC
Q 013235          251 TSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSHFWGF-EAHGVVPD  318 (447)
Q Consensus       251 ~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----------fgr~G~~~~~~-~~~gv~pD  318 (447)
                      .+..+++|+++ |+++++|. ..+.+++++|.++|++||+++|+||+|+.          +.+.|..+..+ +..+..+|
T Consensus       171 t~~~~~~v~l~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d  249 (456)
T 2ez2_A          171 GAENIAYICLAVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD  249 (456)
T ss_dssp             CGGGEEEEEEESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS
T ss_pred             cccceeEEEEeccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCC
Confidence            22356888888 66668886 45788999999999999999999999985          44555211111 12344589


Q ss_pred             EEEee-ccccC-Ccccccccc-CHHHHHhhcCCc-c---cccCCC-ChHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235          319 IVTMA-KGIGN-GIPLGAVVT-TPEIAEVLTRRN-Y---FNTFGG-NPVCTAA-GHAVLKVIQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       319 ivt~s-K~lg~-G~pigav~~-~~~i~~~l~~~~-~---~~T~~~-np~a~aa-ala~L~~i~~~~l~~~~~~~g~~l~~  389 (447)
                      ++++| |.+++ | ..|++++ ++++++.+.... +   ..++.+ |+..+++ +.+.++.++ +++.++.+++.+++++
T Consensus       250 ~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~  327 (456)
T 2ez2_A          250 GCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGD  327 (456)
T ss_dssp             EEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred             EEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence            99885 66654 3 4788887 688877654311 1   123333 4444444 566665553 4677788888888888


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEEEee--CCCCCCCCHHH-HHHHHHHH-HhCCcee
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAE-TLYIMDKM-KGICALF  443 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~--~~~~~~p~~~~-~~~~~~~l-~~~Gvlv  443 (447)
                      .|+++  .+..+.  ...|.++.+.+..  +...  . ... ...+.+.| .++||.+
T Consensus       328 ~L~~~--g~~~~~--p~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~L~~~~gv~~  378 (456)
T 2ez2_A          328 KLKAA--GVPIVE--PVGGHAVFLDARRFCEHLT--Q-DEFPAQSLAASIYVETGVRS  378 (456)
T ss_dssp             HHHHT--TCCBCS--SCCSSEEEEEHHHHTTTSC--G-GGCHHHHHHHHHHHHHSEEC
T ss_pred             HHhcC--CCcccc--CCCceEEEEEhHHhcCCCC--h-hhccHHHHHHHHHHhcCeee
Confidence            88774  333322  3347777777642  1111  1 111 44567777 5789875

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.86  E-value=2.3e-20  Score=187.25  Aligned_cols=298  Identities=12%  Similarity=0.054  Sum_probs=194.4

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELA  174 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~A  174 (447)
                      .+|+.|+|..+.     ++ .+|+|.+|+.+++..  +. ..+..+...+++++|+++++.+.+ ++++++||++|++.+
T Consensus        16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   86 (393)
T 2huf_A           16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT   86 (393)
T ss_dssp             CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred             CCCCeEEecCCC-----CC-CCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence            456777765442     22 689999998776543  11 123456778999999999876554 799999999999999


Q ss_pred             HHHHHhhcCCCeEEEEcCCcccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235          175 IMMARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (447)
Q Consensus       175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (447)
                      ++.+.  .++++|++.+++||+.....+ ...+          ..+..++.+.    .+..|    .+++++.+...   
T Consensus        87 ~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~~~i~~~---  143 (393)
T 2huf_A           87 LCNLL--EDGDVILIGHTGHWGDRSADMATRYG----------ADVRVVKSKV----GQSLS----LDEIRDALLIH---  143 (393)
T ss_dssp             HHHHC--CTTCEEEEEESSHHHHHHHHHHHHTT----------CEEEEEECCT----TCCCC----HHHHHHHHHHH---
T ss_pred             HHHHh--CCCCEEEEECCCcchHHHHHHHHHcC----------CeeEEEeCCC----CCCCC----HHHHHHHHhcc---
Confidence            98763  356789999999998421111 0011          0122333211    11234    56777777531   


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCcc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIP  331 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~p  331 (447)
                      ++.+|++++.++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +..+.  ..+|++++  +|.++++.+
T Consensus       144 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~~d~~~~s~sK~l~g~~G  213 (393)
T 2huf_A          144 KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGAP---MFMDR--WEIDAMYTGSQKVLGAPPG  213 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCSEEECCSSSTTCCCSS
T ss_pred             CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---cchhh--cCccEEEECCCcccccCCC
Confidence            4567888888889999876    8899999999999999999985 54321   22222  24788875  499876555


Q ss_pred             ccccccCHHHHHhhcCC-----cc-----------------cccCC-CChHHHHHHHHHHHHHhhh---hHHHHHHHHHH
Q 013235          332 LGAVVTTPEIAEVLTRR-----NY-----------------FNTFG-GNPVCTAAGHAVLKVIQKD---KLQNNAHVVGS  385 (447)
Q Consensus       332 igav~~~~~i~~~l~~~-----~~-----------------~~T~~-~np~a~aaala~L~~i~~~---~l~~~~~~~g~  385 (447)
                      +|++++++++++.+...     .+                 ..+++ .|..+++++.++|+.+.++   ++.++.+++.+
T Consensus       214 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  293 (393)
T 2huf_A          214 ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAK  293 (393)
T ss_dssp             CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            69999999998877542     11                 11222 3556666666788877543   46677888888


Q ss_pred             HHHHHHHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          386 YLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      ++.+.|+++  .+....... ..+.++.+.+...        ....++.+.|+++ ||++.+
T Consensus       294 ~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~  345 (393)
T 2huf_A          294 RLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG--------VDWLKAAQYAMKTYLVEISG  345 (393)
T ss_dssp             HHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBC
T ss_pred             HHHHHHHHc--CCeeccCccccCCcEEEEEcCCC--------CCHHHHHHHHHHhCCEEEec
Confidence            888888776  333322111 1245677776311        0135688888875 999875

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.85  E-value=3.8e-20  Score=186.12  Aligned_cols=259  Identities=14%  Similarity=0.066  Sum_probs=173.7

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..+|+++...+++++|+++++.+ + .++++||++|++.+++.+.  .++++|++.+++||+..........        
T Consensus        46 ~~~~~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~~~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~--------  113 (386)
T 1cs1_A           46 YSRRGNPTRDVVQRALAELEGGA-G-AVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK--------  113 (386)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTCS-E-EEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHHT--------
T ss_pred             eeCCCCccHHHHHHHHHHHhCCC-c-EEEeCCHHHHHHHHHHHHh--CCCCEEEEecCCcHhHHHHHHHHHH--------
Confidence            34567788889999999998754 4 4455888999999999763  3568899999999874332111100        


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                       ..|+.....|.       .|    .+++++.+..    ++++|+++++++++|.+.+    +++|.++|++||+++|+|
T Consensus       114 -~~g~~~~~~~~-------~d----~~~l~~~i~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D  173 (386)
T 1cs1_A          114 -RGCYRVLFVDQ-------GD----EQALRAALAE----KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVD  173 (386)
T ss_dssp             -TTSCEEEEECT-------TC----HHHHHHHHHT----CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred             -hcCCEEEEeCC-------CC----HHHHHHhhcc----CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEE
Confidence             01222222221       13    5778877762    5789999999999999885    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCH-HHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~-~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      |+|+++...-  .  . .+  .+|++  +++|.+++ |.++ |++++++ ++++.+....+..+++.||++++++++.++
T Consensus       174 e~~~~~~~~~--~--~-~~--~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~  246 (386)
T 1cs1_A          174 NTFLSPALQN--P--L-AL--GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR  246 (386)
T ss_dssp             CTTTCTTTCC--G--G-GG--TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred             CCCcccccCC--c--c-cc--CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence            9998775431  1  1 23  35666  68899986 4666 9998886 788877654344456689999988888876


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHH---h-cCCee----------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHH
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKD---K-YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK  435 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~---~-~~~i~----------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~  435 (447)
                      .+.  ...++..+..+.+.+.|+++..   . ++.+.          .+++.|.++.+++.+.          ...+.+.
T Consensus       247 ~~~--~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  314 (386)
T 1cs1_A          247 TLV--PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRF  314 (386)
T ss_dssp             THH--HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHH
Confidence            542  2334444444555554444210   0 11111          1256799999997421          2456777


Q ss_pred             HHhCCceee
Q 013235          436 MKGICALFF  444 (447)
Q Consensus       436 l~~~Gvlv~  444 (447)
                      |.++||+++
T Consensus       315 l~~~gi~~~  323 (386)
T 1cs1_A          315 LGGLSLFTL  323 (386)
T ss_dssp             HHTCSSSEE
T ss_pred             HHhCCcceE
Confidence            888999886

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.85  E-value=1.8e-20  Score=189.26  Aligned_cols=288  Identities=17%  Similarity=0.106  Sum_probs=190.4

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      +.||||.+|....  +   |+|.+|+.++++...+    +..+...+++++|+++++.  +.+++++||++|++.+++.+
T Consensus        30 ~~~id~~~~~~~~--~---~~v~~a~~~~~~~~~y----~~~~~~~~l~~~la~~~~~--~~~v~~~~Gt~a~~~~l~~~   98 (399)
T 2oga_A           30 VPFLDLKAAYEEL--R---AETDAAIARVLDSGRY----LLGPELEGFEAEFAAYCET--DHAVGVNSGMDALQLALRGL   98 (399)
T ss_dssp             BCSCCHHHHHHHT--H---HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHTTS--SEEEEESCHHHHHHHHHHHT
T ss_pred             CcccccCcCCCCC--C---HHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHCC--CeEEEecCHHHHHHHHHHHh
Confidence            6799999877643  2   8999999998876322    2356788999999999864  36789999999999999876


Q ss_pred             HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                      + ..+++.|++..++||+..... ...+.          .+..++..  . ..+..|    .+++++.+..    ++++|
T Consensus        99 ~-~~~gd~vl~~~~~~~~~~~~~-~~~g~----------~~~~~~~~--~-~~~~~d----~~~l~~~i~~----~~~~v  155 (399)
T 2oga_A           99 G-IGPGDEVIVPSHTYIASWLAV-SATGA----------TPVPVEPH--E-DHPTLD----PLLVEKAITP----RTRAL  155 (399)
T ss_dssp             T-CCTTCEEEEESSSCTHHHHHH-HHTTC----------EEEEECBC--S-SSSSBC----HHHHHHHCCT----TEEEE
T ss_pred             C-CCCcCEEEECCCccHHHHHHH-HHCCC----------EEEEEecC--C-CCCCcC----HHHHHHhcCC----CCeEE
Confidence            3 235678999999999854332 22211          12222221  1 012234    5677776642    56777


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc-ccCCCcccccccCCCCCEEEee----ccccC-Cccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPL  332 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg-r~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pi  332 (447)
                      +++   +.+|.+.+    +++|.++|+++|+++|+||+|+.+. ..|      ..++..+|++++|    |.+++ | +.
T Consensus       156 ~~~---n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~------~~~~~~~di~~~S~~~sK~~~~~G-~~  221 (399)
T 2oga_A          156 LPV---HLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG------RRIGAGSSVAAFSFYPGKNLGCFG-DG  221 (399)
T ss_dssp             CCB---CGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT------EETTCTTCEEEEECCTTSSSCCSS-CC
T ss_pred             EEe---CCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC------eecccccCEEEEeCCCCccCCcCC-ce
Confidence            744   34676654    9999999999999999999996331 222      2234447999885    99997 8 89


Q ss_pred             cccccC-HHHHHhhcCCc-c-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          333 GAVVTT-PEIAEVLTRRN-Y-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       333 gav~~~-~~i~~~l~~~~-~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      |+++++ +++++.+.... .           ..++..++++++++.++|+.++  ++.++.+++.+++++.|.++. .+.
T Consensus       222 g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-g~~  298 (399)
T 2oga_A          222 GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP-GIG  298 (399)
T ss_dssp             EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT-TCB
T ss_pred             EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC-Ccc
Confidence            999886 88876654311 1           2235668999999999998664  356667777777777766531 111


Q ss_pred             CeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          400 IIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       400 ~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      ..... .+.++++.+.+...         ...++.+.|.++||+++..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~~  337 (399)
T 2oga_A          299 LPVTAPDTDPVWHLFTVRTE---------RRDELRSHLDARGIDTLTH  337 (399)
T ss_dssp             CCCCCTTEECCCSSEEEECS---------SHHHHHHHHHHTTBCCBCS
T ss_pred             ccCCCCCCcceeEEEEEECC---------CHHHHHHHHHHCCCceecC
Confidence            11100 12233323444211         1457889999999998753

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.85  E-value=5.2e-21  Score=196.94  Aligned_cols=314  Identities=15%  Similarity=0.060  Sum_probs=184.8

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      |+.||||.++.++       |+|.+|+.+++....   ..| ..+...+|+++|+++++  .++++|++||+||++.|++
T Consensus        40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~~gt~A~~~al~  107 (467)
T 2oqx_A           40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIP  107 (467)
T ss_dssp             GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHC--CSEEEEEC--CCSHHHHHH
T ss_pred             CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhC--cCcEEEcCCcHHHHHHHHH
Confidence            6689999887663       889999988875431   223 35677899999999985  4789999999999999999


Q ss_pred             HHHhhc----C--C-CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcC--CCCCCChHHHHHHHHHHH
Q 013235          177 MARLYT----G--C-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR--GVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       177 ~ar~~t----~--~-~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~--~~~~~d~~~~~~~le~~i  247 (447)
                      .++..+    |  + +.||..  .||+.+..............     ++.....+....  ..+..|    .++|++.+
T Consensus       108 ~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d----~~~Le~~i  176 (467)
T 2oqx_A          108 VLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN-----VYIKEAFDTGVRYDFKGNFD----LEGLERGI  176 (467)
T ss_dssp             HHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE-----CBCTTTTCTTSCCTTTTCBC----HHHHHHHH
T ss_pred             HHhccccccCCCCccceEEec--ccccccchhhhhccCcceee-----ccccccccCCCCCCccCCcC----HHHHHHHH
Confidence            987652    4  2 556654  68876544332211110000     100000110000  011124    67788888


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----------ccccCCC--cccccccCC
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSH--FWGFEAHGV  315 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----------fgr~G~~--~~~~~~~gv  315 (447)
                      .....+++++|++|++++++|..+++.+++++|+++|++||++||+|++|..          .+..|..  .++.+.+ .
T Consensus       177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~  255 (467)
T 2oqx_A          177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-K  255 (467)
T ss_dssp             HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-G
T ss_pred             HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-c
Confidence            6432236889999999888644566889999999999999999999976643          1333311  1110000 1


Q ss_pred             CCCEE--EeeccccCCccccc-cccCHH-HHHhhcC---C----cccccCCCChHHHHHHHHH-HHHHhhhhHHHHHHHH
Q 013235          316 VPDIV--TMAKGIGNGIPLGA-VVTTPE-IAEVLTR---R----NYFNTFGGNPVCTAAGHAV-LKVIQKDKLQNNAHVV  383 (447)
Q Consensus       316 ~pDiv--t~sK~lg~G~piga-v~~~~~-i~~~l~~---~----~~~~T~~~np~a~aaala~-L~~i~~~~l~~~~~~~  383 (447)
                      .+|++  +++|+++  .|+|+ ++++++ +++.+..   .    ....++++.+.+..++++. |+...+++..++..++
T Consensus       256 ~~d~~~~s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~  333 (467)
T 2oqx_A          256 YADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQ  333 (467)
T ss_dssp             GCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCeEEEecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHH
Confidence            24554  5678774  46554 556656 4443321   1    1123445444433333332 3332223455667788


Q ss_pred             HHHHHHHHHHHHHhcCCeeeEeecceeEEEEEee--CCCCCCCCHHH-HHHHHHHH-HhCCceeec
Q 013235          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAE-TLYIMDKM-KGICALFFS  445 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~--~~~~~~p~~~~-~~~~~~~l-~~~Gvlv~~  445 (447)
                      ++++.+.|+++  .++.+ .  ..|.++.+++.+  +..   +.... ..++.+.| .++||++.+
T Consensus       334 ~~~l~~~L~~~--~~~~~-~--~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~L~~~~gv~~~~  391 (467)
T 2oqx_A          334 VQYLVDGLEEI--GVVCQ-Q--AGGHAAFVDAGKLLPHI---PADQFPAQALACELYKVAGIRAVE  391 (467)
T ss_dssp             HHHHHHHHHHT--TCCEE-E--ECSSCEEEEHHHHSTTS---CGGGCHHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHHHHC--CCeee-c--CCceEEEEechhhcccC---CcccccHHHHHHHHHHhcCceecc
Confidence            89999999886  45444 3  345666676632  110   11111 45678888 889999864

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.85  E-value=4.8e-20  Score=186.22  Aligned_cols=291  Identities=12%  Similarity=0.024  Sum_probs=190.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHhCCCCCceEE-EcCCHHHHHHHHHHHHHhhcCCCeEEEE
Q 013235          113 CGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASKMPGNLKVVF-FTNSGTEANELAIMMARLYTGCNDIISL  190 (447)
Q Consensus       113 lGh~~p~v~~A~~~~l~~~~~~-~~~~~~~~~~elae~L~~~~~~~~~~v~-~~~sGseA~e~Aik~ar~~t~~~~ii~~  190 (447)
                      +++.++.+.+++.+++.+.... ......+...+++++|+++++.+.+.++ +++||++|++.+++..  ..++++|++.
T Consensus        15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~   92 (416)
T 3isl_A           15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP   92 (416)
T ss_dssp             CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred             ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence            4444444445555555442111 1111245678899999999976656554 8999999999999865  4577899999


Q ss_pred             cCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235          191 RNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (447)
Q Consensus       191 ~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~  269 (447)
                      +++||+.... .....+.          .+..++.+.  .  +..|    .++|++.+.+.   ++++|+++.+++++|.
T Consensus        93 ~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~  151 (416)
T 3isl_A           93 IYGRFGYLLTEIAERYGA----------NVHMLECEW--G--TVFD----PEDIIREIKKV---KPKIVAMVHGETSTGR  151 (416)
T ss_dssp             ESSHHHHHHHHHHHHTTC----------EEEEEECCT--T--CCCC----HHHHHHHHHHH---CCSEEEEESEETTTTE
T ss_pred             cCCcccHHHHHHHHhcCC----------eeEEEecCC--C--CCCC----HHHHHHHHhhC---CCcEEEEEccCCCCce
Confidence            9999983322 1111111          122333221  1  1124    56777777632   4578899999999998


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcC
Q 013235          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTR  347 (447)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~  347 (447)
                      +.+    +++|.++|++||+++|+||+|+ +|..   .+..+.  ..+|+++++  |.+.++.++|++++++++++.+..
T Consensus       152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~  221 (416)
T 3isl_A          152 IHP----LKAIGEACRTEDALFIVDAVAT-IGGC---EVKVDE--WKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA  221 (416)
T ss_dssp             ECC----CHHHHHHHHHTTCEEEEECTTT-TTTS---CCCTTT--TTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred             ecC----HHHHHHHHHHcCCEEEEECCcc-ccCC---Ccchhh--cCCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence            876    9999999999999999999996 3321   112222  236888755  988887889999999999877652


Q ss_pred             C-------------------------------------c-ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHH
Q 013235          348 R-------------------------------------N-YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSY  386 (447)
Q Consensus       348 ~-------------------------------------~-~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~  386 (447)
                      .                                     . ....+..|..+++++.++|+.+++.   ++.++.+++.++
T Consensus       222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  301 (416)
T 3isl_A          222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA  301 (416)
T ss_dssp             C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            1                                     0 1123345777888888888877654   677888888888


Q ss_pred             HHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       387 l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                      +.+.|+++  .+...... ...+.++.+.+.+.        ....++.+.|+++ ||++.+.
T Consensus       302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g  353 (416)
T 3isl_A          302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASS  353 (416)
T ss_dssp             HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCC
T ss_pred             HHHHHHHc--CCEeccCccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecC
Confidence            88888875  33322211 12356777776321        1145788899887 9998753

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.85  E-value=4.9e-21  Score=193.86  Aligned_cols=272  Identities=17%  Similarity=0.135  Sum_probs=173.3

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC-CC-----CceEE--EcCCHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-GN-----LKVVF--FTNSGTE  169 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~-~~-----~~~v~--~~~sGse  169 (447)
                      ..+|||..|....  ..++|.+.+++.++...   ....| +.....+|.+.+++++. ..     .++|.  .+++|++
T Consensus        41 ~~~i~l~~g~~~d--~~~~~~v~~a~~~a~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g  115 (409)
T 4eu1_A           41 KRKVNLSIGVYRD--DADQPFVLECVKQATLG---TNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG  115 (409)
T ss_dssp             SSCEECCCSSCCC--TTSCCCCCHHHHTCCCC---SCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred             cCceeeeeeEEEC--CCCCEeecHHHHhcCcc---ccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence            3578888776411  23567788888776222   12233 23345677777777652 22     34564  4899999


Q ss_pred             HHHHHHHHHHhhcC-CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          170 ANELAIMMARLYTG-CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       170 A~e~Aik~ar~~t~-~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      |++++..+++.+.+ ++.|++.+++|++........             |...+..|......++.|    .+++++.+.
T Consensus       116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~  178 (409)
T 4eu1_A          116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-------------GMELTPYSYYDPATKGLN----LAGMLECLD  178 (409)
T ss_dssp             HHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCEETTTTEEC----HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-------------CCeEEEEEeecCcCCcCc----HHHHHHHHH
Confidence            99999888777655 488999999998765544332             222222222111122334    677777776


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccc-ccCCCCCEE---Ee
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFE-AHGVVPDIV---TM  322 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~-~~gv~pDiv---t~  322 (447)
                      ... ++.+++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+.  ..+... ..+..++++   +|
T Consensus       179 ~~~-~~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  256 (409)
T 4eu1_A          179 KAP-EGSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSF  256 (409)
T ss_dssp             HSC-TTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEEC
T ss_pred             hCC-CCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecC
Confidence            432 2445555444466677655 677899999999999999999999999976551  123332 235556665   68


Q ss_pred             ecccc-CCcccccc---ccCHH----HHHhhcCCcccccCCCChHHHHHHHHHHHHHh--------hhhHHHHHHHHHHH
Q 013235          323 AKGIG-NGIPLGAV---VTTPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSY  386 (447)
Q Consensus       323 sK~lg-~G~pigav---~~~~~----i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--------~~~l~~~~~~~g~~  386 (447)
                      ||.+| .|+|+|++   +.+++    +++.+.......+++.++++++++.++|+...        -+++.++++++.++
T Consensus       257 SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (409)
T 4eu1_A          257 SKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKR  336 (409)
T ss_dssp             TTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 79999995   67777    55555432234566677888888888886321        12345566666666


Q ss_pred             HHHHHHHH
Q 013235          387 LKERLTAL  394 (447)
Q Consensus       387 l~~~L~~l  394 (447)
                      +.+.|+++
T Consensus       337 l~~~L~~~  344 (409)
T 4eu1_A          337 LVSELKAC  344 (409)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            76666654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.84  E-value=3e-20  Score=186.88  Aligned_cols=303  Identities=15%  Similarity=0.123  Sum_probs=188.9

Q ss_pred             EEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc------cccccccchHHHHHHHHHHHhCCCCCceEEEcCC
Q 013235           93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS  166 (447)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~------~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~s  166 (447)
                      .++.++..|||+.++.      ..+|.|.+|+.+++....      +....+..+...+++++|++.++.+.+++++++|
T Consensus        15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g   88 (400)
T 3vax_A           15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG   88 (400)
T ss_dssp             -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred             CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence            3566778899987543      478999999999987531      1111223456788999999999876678999999


Q ss_pred             HHHHHHHHHHHHHhh--cCCC-eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235          167 GTEANELAIMMARLY--TGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (447)
Q Consensus       167 GseA~e~Aik~ar~~--t~~~-~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (447)
                      |++|++.+++.+..+  .+++ .|++....|++.......+..          .|...+..|...  .+..|    .++|
T Consensus        89 ~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l  152 (400)
T 3vax_A           89 ATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGP--SGRIS----VEGV  152 (400)
T ss_dssp             HHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCT--TCCCC----HHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCC--CCCcC----HHHH
Confidence            999999999976522  2456 888888888765443332211          122222222111  12224    5666


Q ss_pred             HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee
Q 013235          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA  323 (447)
Q Consensus       244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s  323 (447)
                      ++.+.    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ++..     ..+..+. +|++++|
T Consensus       153 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~-----~~~~~~~-~d~~~~s  217 (400)
T 3vax_A          153 MERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV-----PGDLTTP-IDMISIS  217 (400)
T ss_dssp             HTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS-----GGGGGSC-CSEEEEE
T ss_pred             HHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC-----CcChhhc-CcEEEEe
Confidence            66553    36789999999999998876    8999999999999999999996 3322     1222234 8999766


Q ss_pred             --ccccCCccccccc-cCHH-HH---HhhcCCc-------ccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHH
Q 013235          324 --KGIGNGIPLGAVV-TTPE-IA---EVLTRRN-------YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYL  387 (447)
Q Consensus       324 --K~lg~G~pigav~-~~~~-i~---~~l~~~~-------~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l  387 (447)
                        | +.|+.++|+++ ++++ +.   ..+....       ...++..|+.++++..++++.+++  +++.++.+++.+++
T Consensus       218 ~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l  296 (400)
T 3vax_A          218 GHK-IGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRL  296 (400)
T ss_dssp             TGG-GTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             HHH-hCCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              9 44434578887 7651 11   1122111       122444577888878888887755  45667777777788


Q ss_pred             HHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          388 KERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+.|+ + ..+...... ...+.++.+.+...         ...++.+.|. +||++.+
T Consensus       297 ~~~L~-~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~gi~v~~  343 (400)
T 3vax_A          297 LAGLA-S-TSFQVNGDQDHVVPHILNLSFEDV---------DAEAFLVTLK-DLVAVAT  343 (400)
T ss_dssp             HHHHT-T-TTCEECSCTTSBCTTEEEEECTTC---------CHHHHHHHHH-HHHHHTT
T ss_pred             HHhhC-C-CCEEEeCCcccCCCCEEEEEeCCC---------CHHHHHHHHh-cCcEEEe
Confidence            77776 2 122111110 11245666655211         1356788888 8987754

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.84  E-value=2.4e-19  Score=182.07  Aligned_cols=274  Identities=12%  Similarity=0.074  Sum_probs=181.7

Q ss_pred             cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      .++|.+|+..+++.+  ....|....+.++...+++++|+++++.  +.++|++||++|++.+++.+  ..++++|++..
T Consensus        29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~  102 (412)
T 2cb1_A           29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGA--LEAVVLASGQAATFAALLAL--LRPGDEVVAAK  102 (412)
T ss_dssp             BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTT--CCTTCEEEEET
T ss_pred             eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence            567888876665544  2333333344567889999999999854  47899999999999999865  33567899999


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      +.||+..........         ..|+.....+.        |    .++|++.+.    .++++|++|++++++|.+.
T Consensus       103 ~~~~~~~~~~~~~~~---------~~g~~~~~~~~--------~----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~  157 (412)
T 2cb1_A          103 GLFGQTIGLFGQVLS---------LMGVTVRYVDP--------E----PEAVREALS----AKTRAVFVETVANPALLVP  157 (412)
T ss_dssp             TCCHHHHHHHHHTTT---------TTTCEEEEECS--------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCC
T ss_pred             CCchhHHHHHHHHHH---------HcCCEEEEECC--------C----HHHHHHHhc----cCCeEEEEeCCCCCCcccc
Confidence            999764432211100         11333222221        2    467777664    2688999999999999988


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccC-CccccccccCH---------
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVTTP---------  339 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pigav~~~~---------  339 (447)
                      +    +++|.++|++||+++|+||+|++++...      ...+..+|+++  ++|.+++ |.|+|+++..+         
T Consensus       158 ~----l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~  227 (412)
T 2cb1_A          158 D----LEALATLAEEAGVALVVDNTFGAAGALC------RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYP  227 (412)
T ss_dssp             C----HHHHHHHHHHHTCEEEEECGGGTTTTSC------CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSG
T ss_pred             c----HHHHHHHHHHcCCEEEEECCCccccccC------CccccCCeEEEECCcccccCCCCcEEEEEEecccccccccc
Confidence            6    9999999999999999999998763222      12234579887  7899975 68899887543         


Q ss_pred             -------------------HHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          340 -------------------EIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       340 -------------------~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                                         ++.+.+.... ....+..+|..++.++..++.++  ...++..++.++|.+.|.+.    +
T Consensus       228 ~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~  301 (412)
T 2cb1_A          228 QFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVA--LRVARMSETARFLAERLQGH----P  301 (412)
T ss_dssp             GGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTC----T
T ss_pred             ccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHH--HHHHHHHHHHHHHHHHHHcC----C
Confidence                               3333332211 11123457888888877776552  34455566777777776553    3


Q ss_pred             CeeeE------------------eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          400 IIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       400 ~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      .+..+                  +|.|.++.|++ .+          ...+.+.|.+.||++
T Consensus       302 ~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~  352 (412)
T 2cb1_A          302 KVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK  352 (412)
T ss_dssp             TCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE
T ss_pred             CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee
Confidence            34333                  46788999998 32          234555666778876

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.84  E-value=3.1e-20  Score=188.15  Aligned_cols=254  Identities=14%  Similarity=0.050  Sum_probs=169.4

Q ss_pred             ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      ...++.++...+|+++|+++.+.  +.+++++||++|++++++++   ..++.|++.+++|||.........        
T Consensus        60 ~y~r~~~p~~~~l~~~la~l~g~--~~~~~~~sG~~Ai~~~~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~--------  126 (400)
T 3nmy_A           60 EYSRTHNPTRFAYERCVAALEGG--TRAFAFASGMAATSTVMELL---DAGSHVVAMDDLYGGTFRLFERVR--------  126 (400)
T ss_dssp             CBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTTS---CTTCEEEEESSCCHHHHHHHHHTH--------
T ss_pred             ccccCCCHHHHHHHHHHHHHhCC--CCEEEecCHHHHHHHHHHHc---CCCCEEEEeCCCchHHHHHHHHhh--------
Confidence            34567788999999999999854  46888999999999865432   356789999999987654432210        


Q ss_pred             ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                      ....|+.....+.       +|    .+++++.+.    .++++|++|++++++|.+.+    +++|.++|++||+++|+
T Consensus       127 ~~~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~liv  187 (400)
T 3nmy_A          127 RRTAGLDFSFVDL-------TD----PAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVV  187 (400)
T ss_dssp             HHHHCCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEE
T ss_pred             HhhcCeEEEEECC-------CC----HHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEE
Confidence            0001222222211       13    567777664    37899999999999999886    99999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEEeeccccC-Cccccc--c-ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGA--V-VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~piga--v-~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      ||+|+.. ...    ....+|..+.+.+++|.+++ |.++|.  + +.++++++.+.......+...+|+.+++++..|+
T Consensus       188 De~~~~~-~~~----~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~  262 (400)
T 3nmy_A          188 DNTFASP-MLQ----RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK  262 (400)
T ss_dssp             ECTTTHH-HHC----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT
T ss_pred             ECCCccc-ccC----ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh
Confidence            9999621 111    11223443333458999996 467655  3 3477888777654444566778999988888876


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEeeCCCCCCCCHHHHHH
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLY  431 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~~~  431 (447)
                      .++.  ..++..++.+++.+.|+    +++.+..|                  +|.|.|++|++..+       .+.+.+
T Consensus       263 ~l~~--r~~~~~~~a~~l~~~L~----~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-------~~~~~~  329 (400)
T 3nmy_A          263 TLPL--RMRAHCENALALAQWLE----THPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-------FDAAKR  329 (400)
T ss_dssp             THHH--HHHHHHHHHHHHHHHHT----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-------HHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-------HHHHHH
Confidence            5532  33444455555544443    45667777                  88999999999421       123455


Q ss_pred             HHHHHH
Q 013235          432 IMDKMK  437 (447)
Q Consensus       432 ~~~~l~  437 (447)
                      +.+.|.
T Consensus       330 ~~~~l~  335 (400)
T 3nmy_A          330 FCEKTE  335 (400)
T ss_dssp             HHHHCS
T ss_pred             HHHcCC
Confidence            666554

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.84  E-value=5.7e-20  Score=181.28  Aligned_cols=279  Identities=16%  Similarity=0.061  Sum_probs=186.2

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yH  195 (447)
                      .+|+|.+|+.+++..  +. .....+...+++++|+++++.+.+.+++++||++|++.+++.+.  .++++|++.+++|+
T Consensus        12 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~~   86 (352)
T 1iug_A           12 LHPKALEALARPQLH--HR-TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGKF   86 (352)
T ss_dssp             CCHHHHHHHHSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSHH
T ss_pred             CCHHHHHHhccCCCC--cc-CHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--CCCCeEEEEeCCch
Confidence            679999999877642  11 11123456889999999987655789999999999999999763  35678999999999


Q ss_pred             cCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235          196 GNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (447)
Q Consensus       196 G~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~  274 (447)
                      +.....+ ...+.          .+..++.+.  .  +..|    .+++++       .++++|+++..++++|.+.+  
T Consensus        87 ~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~-------~~~~~v~~~~~~nptG~~~~--  139 (352)
T 1iug_A           87 SERFYEIALEAGL----------VVERLDYPY--G--DTPR----PEDVAK-------EGYAGLLLVHSETSTGALAD--  139 (352)
T ss_dssp             HHHHHHHHHHTTC----------EEEEEECCT--T--CCCC----TTTSCC-------SSCSEEEEESEETTTTEECC--
T ss_pred             hHHHHHHHHHcCC----------ceEEEeCCC--C--CCCC----HHHHhc-------cCCcEEEEEEecCCcceecC--
Confidence            8651111 10110          122333211  1  1122    223332       25668888889999999876  


Q ss_pred             ChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcC---
Q 013235          275 GYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTR---  347 (447)
Q Consensus       275 ~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~---  347 (447)
                        +++|.++|++|  |+++|+||+|+ +|...   +..+.+  .+|++++  +|.+.++.++|++++++++++.+..   
T Consensus       140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~  211 (352)
T 1iug_A          140 --LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY  211 (352)
T ss_dssp             --HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS
T ss_pred             --HHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCc
Confidence              99999999999  99999999996 54321   222323  3688865  5988766668999999987754210   


Q ss_pred             -----------CcccccCCCChHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235          348 -----------RNYFNTFGGNPVCTAAGHAVLKVIQKD--KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       348 -----------~~~~~T~~~np~a~aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                                 .....+++.|+.+++++.++|+.+++.  ++.++.+++.+++.+.|+++  .+...... ..+.+++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~  288 (352)
T 1iug_A          212 YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFY  288 (352)
T ss_dssp             TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEE
T ss_pred             eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEE
Confidence                       012234556788888888899887654  56677778888888888775  22211111 257788887


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+.        ....++.+.|.++||++.+
T Consensus       289 ~~~~--------~~~~~~~~~l~~~gi~v~~  311 (352)
T 1iug_A          289 LPEG--------VPYARVKEAFAQRGAVIAG  311 (352)
T ss_dssp             CCTT--------CCHHHHHHHHHTTTEECEE
T ss_pred             cCCC--------CCHHHHHHHHHHCCEEEEe
Confidence            7321        0135688999999999875

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.84  E-value=1e-19  Score=190.11  Aligned_cols=288  Identities=15%  Similarity=0.060  Sum_probs=180.8

Q ss_pred             CCCHHHHHHHHHHHHhccccc----cccc--chHHHHHHHHHHHhCCCCC--ceE--EEcCCHHHHHHHHHHHHHhhcC-
Q 013235          115 HCHPYVVDSIVNQIKRIQHST----VLYL--NHAIADFAEALASKMPGNL--KVV--FFTNSGTEANELAIMMARLYTG-  183 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~----~~~~--~~~~~elae~L~~~~~~~~--~~v--~~~~sGseA~e~Aik~ar~~t~-  183 (447)
                      |.++.+.+++.+++......+    ..++  .....+++++|++.++.+.  +.+  +|++||++|++.+++.++...+ 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~  186 (514)
T 3mad_A          107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA  186 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence            456888888877776542211    1111  2233456677788886442  456  9999999999999999886542 


Q ss_pred             -----CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          184 -----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       184 -----~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                           ++.|++..++|++....+... +.          .+..++...    .+..|    .++|++.+.    +++++|
T Consensus       187 ~~g~~~d~Vi~~~~~~~~~~~~~~~~-G~----------~v~~v~~~~----~~~~d----~~~Le~~i~----~~~~~v  243 (514)
T 3mad_A          187 TKGITAPEAVVPVSAHAAFDKAAQYF-GI----------KLVRTPLDA----DYRAD----VAAMREAIT----PNTVVV  243 (514)
T ss_dssp             HHCCSSCEEEEETTSCTHHHHHHHHH-TC----------EEEEECBCT----TSCBC----HHHHHHHCC----TTEEEE
T ss_pred             hcCCCCCeEEEeCccchHHHHHHHHc-CC----------eeEEeeeCC----CCCCC----HHHHHHHhc----cCCEEE
Confidence                 278999999988754433322 11          233343321    12234    677777764    268899


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc-----cccCC--CcccccccCCCCCEEEe--eccccCC
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF-----ARTGS--HFWGFEAHGVVPDIVTM--AKGIGNG  329 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf-----gr~G~--~~~~~~~~gv~pDivt~--sK~lg~G  329 (447)
                      ++++.++++|.+.+    +++|.++|++||++||+||+|++|     +++|.  ..+.+...|+  |++++  +|.+.+|
T Consensus       244 ~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~~K~l~~~  317 (514)
T 3mad_A          244 AGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV--TSVSADTHKYGYGA  317 (514)
T ss_dssp             EEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTC--CEEEECTTTTTCCC
T ss_pred             EEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCC--cEEEECchhccCCC
Confidence            99999999999876    999999999999999999999987     34552  1233444555  66654  5998888


Q ss_pred             ccccccccCHHHHHhhcCCc--------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235          330 IPLGAVVTTPEIAEVLTRRN--------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~--------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      +++|+++++++.........              .+++++.+.+++.+++..+....-+++.+++.++.+++.+.|+++ 
T Consensus       318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-  396 (514)
T 3mad_A          318 KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI-  396 (514)
T ss_dssp             SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred             CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence            99999998877654432100              111111223444444444432222456777888888888888764 


Q ss_pred             HhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       396 ~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                         +.+.-+.....++.+....      .   ...++.+.|+++||++.
T Consensus       397 ---~g~~~~~~~~~~~~~~~~~------~---~~~~l~~~L~~~Gi~v~  433 (514)
T 3mad_A          397 ---PSLKILGDPLWVIAVASDE------L---NIYQVMEEMAGRGWRLN  433 (514)
T ss_dssp             ---TTCEESSCCSSEEEEECSS------S---CHHHHHHHHHTTTCBCE
T ss_pred             ---CCeEEeCCCeEEEEEeCCC------C---CHHHHHHHHHhcCCEec
Confidence               2121111123355554311      0   14578999999999873

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.84  E-value=1.5e-19  Score=181.49  Aligned_cols=285  Identities=12%  Similarity=0.076  Sum_probs=188.8

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      .+|++.+|+.+++..  +. ..++.....++.++|+++++.+.+ ++++++||++|++.+++.+.  .++++|++.+++|
T Consensus        29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~~~~~  103 (396)
T 2ch1_A           29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--EEGDRVLIAVNGI  103 (396)
T ss_dssp             CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred             CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--CCCCeEEEEcCCc
Confidence            568888887665432  11 112334578999999999876666 79999999999999998763  3567899999999


Q ss_pred             ccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          195 HGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       195 HG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      ++... ......+.          .+..++.+.    .+..|    .+++++.+...   ++++|++++.++++|.+.+ 
T Consensus       104 ~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~-  161 (396)
T 2ch1_A          104 WAERAVEMSERYGA----------DVRTIEGPP----DRPFS----LETLARAIELH---QPKCLFLTHGDSSSGLLQP-  161 (396)
T ss_dssp             HHHHHHHHHHHTTC----------EEEEEECCT----TSCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred             ccHHHHHHHHHcCC----------ceEEecCCC----CCCCC----HHHHHHHHHhC---CCCEEEEECCCCCCceecC-
Confidence            98531 11111110          122333221    12234    56777777532   3567888888888898876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc--
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN--  349 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~--  349 (447)
                         +++|.++|+++|+++|+||+|. +|...   +..+.  ..+|+++++  |.++++.++|++++++++++.+....  
T Consensus       162 ---~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~  232 (396)
T 2ch1_A          162 ---LEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMDK--WEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTK  232 (396)
T ss_dssp             ---CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred             ---HHHHHHHHHHcCCEEEEEcccc-ccCCc---cchhh--cCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCc
Confidence               8899999999999999999997 65321   22222  347988766  99987777899999999887764210  


Q ss_pred             ---------------------ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          350 ---------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       350 ---------------------~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                                           ....++.|..+++++.++|+.+.++   ++.++.+++.+++.+.|+++  .+..+....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  310 (396)
T 2ch1_A          233 SKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDP  310 (396)
T ss_dssp             CSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSG
T ss_pred             ccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCc
Confidence                                 1122345677888888889876443   45677888888888888876  333322111


Q ss_pred             --ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          406 --GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       406 --g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                        ..+.++.+.+.+.        ....++.+.|+++ ||++.+.
T Consensus       311 ~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g  346 (396)
T 2ch1_A          311 RHRLPTVTGIMIPKG--------VDWWKVSQYAMNNFSLEVQGG  346 (396)
T ss_dssp             GGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCBCCBCC
T ss_pred             cccCCceEEEEcCCC--------CCHHHHHHHHHHhCCEEEecC
Confidence              1244677766211        0145788889876 9998753

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.83  E-value=5.1e-20  Score=181.97  Aligned_cols=293  Identities=14%  Similarity=0.069  Sum_probs=180.0

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      ..+|||.++.    .++.+|+|.+|+.+++..  +.......+...+++++|++.++ ....++|++||++|++.+++.+
T Consensus         7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~   79 (356)
T 1v72_A            7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAM   79 (356)
T ss_dssp             CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTS
T ss_pred             CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHh
Confidence            4689998753    367999999999988632  22222246777899999999986 3345899999999999999976


Q ss_pred             HhhcCCCeEEEEcCCcccCchhh--hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH-HHHcc---CC
Q 013235          179 RLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD-LIDFG---TS  252 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~~~--~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~-~i~~~---~~  252 (447)
                      +.  .++.|++..+ +|+.....  +.....          |...+..|..   .+..|    .++|++ .+...   ..
T Consensus        80 ~~--~gd~vi~~~~-~~~~~~~~~~~~~~~~----------g~~~~~v~~~---~~~~d----~~~l~~~~i~~~~~~~~  139 (356)
T 1v72_A           80 TP--PWGNIYCHPA-SHINNDECGAPEFFSN----------GAKLMTVDGP---AAKLD----IVRLRERTREKVGDVHT  139 (356)
T ss_dssp             CC--TTEEEEECTT-SHHHHSSTTHHHHHTT----------SCEEEECCCG---GGCCC----HHHHHHHTTSSTTCTTS
T ss_pred             cC--CCCEEEEcCc-cchhhhhchHHHHHhC----------CcEEEEecCC---CCeEc----HHHHHHHhhhcchhhcc
Confidence            43  4455665554 44443322  222100          2222222221   12234    567777 66531   11


Q ss_pred             CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc--cCCCcccccccC--CCCCEEE--eeccc
Q 013235          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWGFEAHG--VVPDIVT--MAKGI  326 (447)
Q Consensus       253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr--~G~~~~~~~~~g--v~pDivt--~sK~l  326 (447)
                      .++++|++++.+ ++|.+ ++.+++++|.++|++||+++|+||+|..+..  .|..   ....+  ...|+++  ++|. 
T Consensus       140 ~~~~~v~~~~~~-~tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~~~~~~d~~~~s~sK~-  213 (356)
T 1v72_A          140 TQPACVSITQAT-EVGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS---PAEMTWKAGVDALSFGATKN-  213 (356)
T ss_dssp             CEEEEEEEESSC-TTSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC---TTTTTGGGTCCEEEECCGGG-
T ss_pred             CCceEEEEEcCC-CCCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC---HHHhhhhhcCCEEEEecccC-
Confidence            268899999865 47865 5789999999999999999999999975421  1211   11121  2457765  5676 


Q ss_pred             cCCcccc--ccccCHHHHHhhcCC-cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          327 GNGIPLG--AVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       327 g~G~pig--av~~~~~i~~~l~~~-~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                        |.|+|  ++++++++++.+... .+.++...  .+..++.++++.++++   ++.++.+++.+++++.|+++    +.
T Consensus       214 --g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g  285 (356)
T 1v72_A          214 --GVLAAEAIVLFNTSLATEMSYRRKRAGHLSS--KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----GG  285 (356)
T ss_dssp             --TCSSCEEEEESSGGGHHHHHHHHHHTTCCCS--STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----TT
T ss_pred             --CCcCccEEEEECHHHHhhHHHHhhccCchhh--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----CC
Confidence              45888  777899888766432 11122111  1223344456666543   24556666677777666543    22


Q ss_pred             eee-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          401 IGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       401 i~~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.- .+..+.++.+.+.             .++.+.|.++||++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gi~v~~  318 (356)
T 1v72_A          286 VEVLGGTEANILFCRLD-------------SAMIDALLKAGFGFYH  318 (356)
T ss_dssp             EEEESCCCSSEEEEEEC-------------HHHHHHHHHTTCBCBC
T ss_pred             cEEccCCCccEEEEEcC-------------HHHHHHHHhcCeEEec
Confidence            221 1344666666651             2588889999999874

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.83  E-value=1.3e-19  Score=183.12  Aligned_cols=281  Identities=12%  Similarity=0.012  Sum_probs=179.1

Q ss_pred             CCHHHHHHHHHHHHh-cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKR-IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~-~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      ..+.+.+++..+... ..+....+.++...+++++|+++++.+  .+++++||++|++.+++.+.  .+++.|++.+++|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~--~~gd~vi~~~~~~  113 (398)
T 2rfv_A           38 VFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC--QQGDHIVSASAIY  113 (398)
T ss_dssp             CCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESSSC
T ss_pred             ccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCCc
Confidence            345666665522221 123334556888999999999998643  67788899999999998763  3568899999999


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~  274 (447)
                      |+..........         ..|+..+..|.       .|    .+++++.+.    +++++|+++++++++|.+.+  
T Consensus       114 ~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~--  167 (398)
T 2rfv_A          114 GCTHAFLSHSMP---------KFGINVRFVDA-------AK----PEEIRAAMR----PETKVVYIETPANPTLSLVD--  167 (398)
T ss_dssp             HHHHHHHHTHHH---------HTTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSBTTTTBCCC--
T ss_pred             ccHHHHHHHHHH---------HcCCEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccC--
Confidence            876554311100         01222222221       12    566776664    26889999999999999886  


Q ss_pred             ChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCHHHHH-hhcCCc
Q 013235          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRN  349 (447)
Q Consensus       275 ~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~~i~~-~l~~~~  349 (447)
                        +++|.++|++||+++|+||+|..+ ..+ ...   .++  +|++  +++|.+++ |.|+ |++++++++++ .+....
T Consensus       168 --l~~i~~l~~~~~~~li~De~~~~~-~~~-~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~  238 (398)
T 2rfv_A          168 --IETVAGIAHQQGALLVVDNTFMSP-YCQ-QPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL  238 (398)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTTCT-TTC-CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH
T ss_pred             --HHHHHHHHHHcCCEEEEECCCccc-ccC-Cch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH
Confidence              999999999999999999999743 222 111   233  5664  68899975 7898 99999999886 555333


Q ss_pred             ccc-cCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------HhcCCee----eEeecceeEEEE
Q 013235          350 YFN-TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK----------DKYGIIG----DVRGRGFLLGVE  414 (447)
Q Consensus       350 ~~~-T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~----------~~~~~i~----~vrg~Gl~~gie  414 (447)
                      +.. +.+.||++++++.++|+.+.  ...++..+..+.+.+.|++..          .+++.+.    ..++.|.|+.++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~  316 (398)
T 2rfv_A          239 KDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE  316 (398)
T ss_dssp             HHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred             HhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence            333 56788999999999986542  223344444455555554320          0011110    013678999998


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +...       .....++.+++...|+.+.
T Consensus       317 ~~~~-------~~~~~~l~~~~~~~~i~~~  339 (398)
T 2rfv_A          317 IAGG-------LEAGRRMINSVELCLLAVS  339 (398)
T ss_dssp             ETTH-------HHHHHHHHTTCSSSEECSC
T ss_pred             EcCC-------HHHHHHHHHhCCcceeccC
Confidence            8421       1234556666655566543

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.83  E-value=1.2e-19  Score=182.77  Aligned_cols=299  Identities=9%  Similarity=0.031  Sum_probs=185.7

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHH-hccc--cccc-cc-chHHHHHH----HHHHHhCCCCCceEEEcCCHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQH--STVL-YL-NHAIADFA----EALASKMPGNLKVVFFTNSGTE  169 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~--~~~~-~~-~~~~~ela----e~L~~~~~~~~~~v~~~~sGse  169 (447)
                      +.++|+.++.   ++   +|+|.+|+.+++. ...+  .... +. .+...++.    ++|++.++.+ ...++++||++
T Consensus        24 ~~~~~~~~~~---~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~   96 (405)
T 2vi8_A           24 AKIELIASEN---FV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQ   96 (405)
T ss_dssp             HSEECCTTCC---CC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred             cceeeccCcc---cC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHH
Confidence            3577775442   22   8999999999885 3321  1111 21 23344444    6888888654 33456788899


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhh--hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~--~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      |++.+++.+.  .+++.|++..++|++.....  +...+.          ++..++.+... ..+..|    .+++++.+
T Consensus        97 a~~~a~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i  159 (405)
T 2vi8_A           97 ANMAVYFTVL--EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVDP-ETHVID----YDDVREKA  159 (405)
T ss_dssp             HHHHHHHHHC--CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBCT-TTCSBC----HHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCEEEEecccccchhcccchhhhccc----------eeEEEeccccc-ccCCcC----HHHHHHHH
Confidence            9999999773  35678888888765443211  111110          01122222100 112234    56777777


Q ss_pred             HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEE--Eeec
Q 013235          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAK  324 (447)
Q Consensus       248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDiv--t~sK  324 (447)
                      ...   ++++|++.|.+  .|    ....+++|.++|++||+++|+||+|+ +|+.+...   ...++ .+|++  +++|
T Consensus       160 ~~~---~~~~v~~~~~~--~~----~~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~---~~~~~~~~di~~~s~sK  226 (405)
T 2vi8_A          160 RLH---RPKLIVAAAAA--YP----RIIDFAKFREIADEVGAYLMVDMAHI-AGLVAAGL---HPNPVPYAHFVTTTTHK  226 (405)
T ss_dssp             HHH---CCSEEEECCSS--CC----SCCCHHHHHHHHHHHTCEEEEECTTT-HHHHHTTS---SCCSTTTCSEEEEESSS
T ss_pred             Hhc---CCeEEEEeCCC--CC----ccCCHHHHHHHHHHcCCEEEEEcccc-ccccccCc---CCCccccCCEEEEeccc
Confidence            632   34567775422  12    22238999999999999999999998 66543111   11222 57887  6889


Q ss_pred             cccCCccccccccCHHHHHhhcCCcccccCCC-ChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       325 ~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~-np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      .++++.. |++++++++++.+.......++++ |+..++++.++|+.+++   +++.++++++.+++.+.|+++  .+..
T Consensus       227 ~~~g~~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  303 (405)
T 2vi8_A          227 TLRGPRG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTL  303 (405)
T ss_dssp             TTCCCSC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred             cCCCCCC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeE
Confidence            9985444 999999999887754322334454 67777777788887654   467788888888888888875  3322


Q ss_pred             eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       401 i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.. ++.+.++++++....       .....+.+.|.++||++.+
T Consensus       304 ~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~  340 (405)
T 2vi8_A          304 VSG-GTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNK  340 (405)
T ss_dssp             GGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEE
T ss_pred             ecC-CCCceEEEEEccCCC-------CCHHHHHHHHHHcCceecc
Confidence            111 246888888874211       0135678888899999875

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.83  E-value=1.7e-20  Score=192.66  Aligned_cols=274  Identities=12%  Similarity=0.058  Sum_probs=166.4

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcc----ccccccc-chHHHHHHHHHHHhC-CCC-----CceEEE--cCCH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----HSTVLYL-NHAIADFAEALASKM-PGN-----LKVVFF--TNSG  167 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~----~~~~~~~-~~~~~elae~L~~~~-~~~-----~~~v~~--~~sG  167 (447)
                      .|||..|....  .+++|.+.+++.+++.++.    .....|. .....++.+.+++++ ...     .++|++  ++||
T Consensus        51 ~i~l~~g~~~d--~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg  128 (448)
T 3meb_A           51 KVNLGVGAYRD--ESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG  128 (448)
T ss_dssp             CEEESSCCCCC--TTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred             eEEeecccccC--CCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence            46766665422  2344555555555533321    2223343 345567888888776 333     368999  9999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhh----hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM----GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~----~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (447)
                      ++|++.++.+.....+++.|++.+++|++......    .. +.          .+..++..+.. +.++.|    ++++
T Consensus       129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~-G~----------~v~~~~~~~~~-~~~~~d----~e~l  192 (448)
T 3meb_A          129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKL-KV----------PYKEYTYLRKD-GELEID----FSNT  192 (448)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTT-TS----------CCEEECCBCTT-SCSSBC----HHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhC-CC----------eEEEEeccccc-cCCCcC----HHHH
Confidence            99999977766556677899999999987654443    21 11          12222221110 023335    5677


Q ss_pred             HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccccc-CCCCC--
Q 013235          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEAH-GVVPD--  318 (447)
Q Consensus       244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~~~-gv~pD--  318 (447)
                      ++.+.... .+..++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+.  ..+....+ +..++  
T Consensus       193 ~~~l~~~~-~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  270 (448)
T 3meb_A          193 KKDIQSAP-EKSIFLFHACAHNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVL  270 (448)
T ss_dssp             HHHHHHSC-TTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEE
T ss_pred             HHHHHhCC-CCcEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEE
Confidence            77776432 2345555555567777764 678899999999999999999999999986541  12333322 33456  


Q ss_pred             -EEEeecccc-CCcccccc--cc---------CH----HHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--------h
Q 013235          319 -IVTMAKGIG-NGIPLGAV--VT---------TP----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------K  373 (447)
Q Consensus       319 -ivt~sK~lg-~G~pigav--~~---------~~----~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--------~  373 (447)
                       +.++||.+| .|+|+|++  ++         ++    ++++.+.......+.+.+.+++.++.+.|+..+        -
T Consensus       271 ~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~  350 (448)
T 3meb_A          271 VAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNV  350 (448)
T ss_dssp             EEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             EEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHH
Confidence             336899999 69999997  55         45    555555432233444566777777777764311        1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 013235          374 DKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       374 ~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      +++.++++++.++|.+.|+++
T Consensus       351 ~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          351 KEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            234455556666666666554

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.83  E-value=3.7e-20  Score=184.69  Aligned_cols=282  Identities=13%  Similarity=0.121  Sum_probs=175.5

Q ss_pred             ccCCCCCHH---HHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235          111 VCCGHCHPY---VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI  187 (447)
Q Consensus       111 ~~lGh~~p~---v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~i  187 (447)
                      .++||++|.   +.+++.+.+...    ..++.+...+++++|+++++.  +.+++++||++|++.+++.++ ..++++|
T Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~-~~~gd~v   81 (374)
T 3uwc_A            9 SYLERQFADIEPYLNDLREFIKTA----DFTLGAELEKFEKRFAALHNA--PHAIGVGTGTDALAMSFKMLN-IGAGDEV   81 (374)
T ss_dssp             CCHHHHTSSCHHHHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEE
T ss_pred             eccccCCCCchHHHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEE
Confidence            344555444   455555544433    234577889999999999964  478899999999999998763 2356889


Q ss_pred             EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCC
Q 013235          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG  267 (447)
Q Consensus       188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~g  267 (447)
                      ++..++||+........             |...+..|..  ..+..|    .+++++.+.    .++++|+  |. +++
T Consensus        82 ~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~--~~~~~d----~~~l~~~~~----~~~~~v~--~~-n~~  135 (374)
T 3uwc_A           82 ITCANTFIASVGAIVQA-------------GATPVLVDSE--NGYVID----PEKIEAAIT----DKTKAIM--PV-HYT  135 (374)
T ss_dssp             EEESSSCHHHHHHHHHT-------------TCEEEEECBC--TTSSBC----GGGTGGGCC----TTEEEEC--CB-CGG
T ss_pred             EECCCccHHHHHHHHHc-------------CCEEEEEecC--CCCCcC----HHHHHHhCC----CCceEEE--Ee-CCc
Confidence            99999999866543322             2222222211  112223    344555443    2566666  44 456


Q ss_pred             ceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccC-CccccccccC-HHH
Q 013235          268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEI  341 (447)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pigav~~~-~~i  341 (447)
                      |.+.+    +++|.++|++||+++|+||+|+.+.     .+..+..+..+|++++|    |.+++ |. .|+++++ +++
T Consensus       136 G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~-----~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~  205 (374)
T 3uwc_A          136 GNIAD----MPALAKIAKKHNLHIVEDACQTILG-----RINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEY  205 (374)
T ss_dssp             GCCCC----HHHHHHHHHHTTCEEEEECTTCTTC-----EETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHH
T ss_pred             CCcCC----HHHHHHHHHHcCCEEEEeCCCccCc-----eeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHH
Confidence            76654    9999999999999999999997432     23335566668999988    99987 75 7777765 456


Q ss_pred             HHhhcCCc------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-ecc
Q 013235          342 AEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRG  408 (447)
Q Consensus       342 ~~~l~~~~------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~G  408 (447)
                      .+.+....            ...++..+++.+++++..++.+  +++.++.+++.+++++.|.++...+....... +..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  283 (374)
T 3uwc_A          206 AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYH  283 (374)
T ss_dssp             HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEEC
T ss_pred             HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCce
Confidence            55443210            1233445777777776666544  34677788888888888776531011111100 112


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .++.+.+...         ...++.+.|.++||.+++.
T Consensus       284 ~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~  312 (374)
T 3uwc_A          284 VFHIYVLRVK---------YRDQLFQYLKDNGIEVKIH  312 (374)
T ss_dssp             CCSSEEEEET---------THHHHHHHHHHTTBCCBCS
T ss_pred             eeEEEEEEcC---------CHHHHHHHHHHCCCccccC
Confidence            2222222111         1457889999999998764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.83  E-value=4.7e-19  Score=178.64  Aligned_cols=276  Identities=13%  Similarity=-0.008  Sum_probs=179.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      .+.+.+++...++.+. ....+...++.++...+|+++|+++++.+  .+++++||++|++.+++.+  ..++++|++.+
T Consensus        31 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~  105 (389)
T 3acz_A           31 TFCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAF--LQKGDHLIAGD  105 (389)
T ss_dssp             BBCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTT--CCTTCEEEEES
T ss_pred             ceecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence            4456666544443322 12234445677889999999999998653  6778899999999999855  23568899999


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      ++||+..........         ..|+.....|.       .|    .+++++.+.    +++++|++|++++++|.+.
T Consensus       106 ~~y~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~  161 (389)
T 3acz_A          106 TLYGCTVSLFTHWLP---------RFGIEVDLIDT-------SD----VEKVKAAWK----PNTKMVYLESPANPTCKVS  161 (389)
T ss_dssp             SCCHHHHHHHHHHHH---------HTTCEEEEECT-------TC----HHHHHHTCC----TTEEEEEEESSCTTTCCCC
T ss_pred             CCchHHHHHHHHHHH---------HcCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCeec
Confidence            999975443211000         01222222221       13    566666653    2678999999999999988


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCH-HHHHhhc
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTP-EIAEVLT  346 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~-~i~~~l~  346 (447)
                      +    +++|.++|+++|+++|+||+|+++. .+ .     ..+..+|++  +++|.+++ |.|+ |++++++ ++++.+.
T Consensus       162 ~----l~~i~~~~~~~~~~livD~~~~~~~-~~-~-----~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~  230 (389)
T 3acz_A          162 D----IKGIAVVCHERGARLVVDATFTSPC-FL-K-----PLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIK  230 (389)
T ss_dssp             C----HHHHHHHHHHHTCEEEEECTTTCTT-TC-C-----GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHH
T ss_pred             C----HHHHHHHHHHcCCEEEEECCCcccc-cc-C-----ccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHH
Confidence            6    9999999999999999999998552 12 1     123457988  58899986 6888 9999998 8888775


Q ss_pred             CCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------Eeecc
Q 013235          347 RRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRG  408 (447)
Q Consensus       347 ~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~G  408 (447)
                      ..........+|+.++++++.|+.+.  ...++..+..+.+.+.|++.    +.+..                  .+|.|
T Consensus       231 ~~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~----~~v~~~~~~~L~~~~~~~~~~~~~~g~g  304 (389)
T 3acz_A          231 FYRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQH----EKIVKVNHPGLESFPGHDIAKKQMTGYG  304 (389)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHC----TTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred             HHHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcC----CCeeEEECCCCCCCccHHHHHhhCCCCC
Confidence            43221233457888888888886542  12233334444444444443    11111                  25678


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .|+.+++..           ...+.+.|.+.|+++.
T Consensus       305 ~~~~~~l~~-----------~~~~~~~l~~~~i~~~  329 (389)
T 3acz_A          305 STFLFEMKS-----------FEAAKKLMEHLKVCTL  329 (389)
T ss_dssp             SEEEEEESS-----------HHHHHHHHTTCSSSEE
T ss_pred             eEEEEEECC-----------HHHHHHHHHhCCCcEE
Confidence            899999831           1234455666787764

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.83  E-value=3.6e-19  Score=178.69  Aligned_cols=277  Identities=13%  Similarity=0.093  Sum_probs=184.6

Q ss_pred             CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG  196 (447)
                      +|++.+++.++++...+    ++.+...+++++|+++++.  +.+++++||++|++.+++.++ ..++++|++..++|++
T Consensus        19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~   91 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVS   91 (393)
T ss_dssp             CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHH
T ss_pred             CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHh
Confidence            48899999998877522    2467788999999999854  578999999999999999763 2356789999999988


Q ss_pred             CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (447)
Q Consensus       197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~  276 (447)
                      ...... ..            |...+..|... ..+..|    .+++++.+..    ++++|++++   ..|.+.+    
T Consensus        92 ~~~~~~-~~------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~~----~~~~v~~~~---~~G~~~~----  142 (393)
T 1mdo_A           92 TLNMIV-LL------------GANPVMVDVDR-DTLMVT----PEHIEAAITP----QTKAIIPVH---YAGAPAD----  142 (393)
T ss_dssp             HHHHHH-HT------------TCEEEEECBCT-TTCCBC----HHHHHHHCCT----TEEEECCBC---GGGCCCC----
T ss_pred             HHHHHH-HC------------CCEEEEEeccC-CcCCCC----HHHHHHhcCC----CceEEEEeC---CCCCcCC----
Confidence            654332 21            22222222111 112234    5677776642    577888776   3455543    


Q ss_pred             HHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcCC-c
Q 013235          277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR-N  349 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~~-~  349 (447)
                      +++|.++|+++|+++|+||+|+ |+...| ..     ++. +|++++|    |.+++| +.|+++++ +++++.+... .
T Consensus       143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~  214 (393)
T 1mdo_A          143 LDAIYALGERYGIPVIEDAAHATGTSYKG-RH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF  214 (393)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHcCCeEEEECccccCCeECC-ee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh
Confidence            9999999999999999999998 343444 22     233 8999877    999876 68889886 7887765431 1


Q ss_pred             cc-------------------cc----CCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe--e--
Q 013235          350 YF-------------------NT----FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII--G--  402 (447)
Q Consensus       350 ~~-------------------~T----~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i--~--  402 (447)
                      +.                   .+    +..+++.++++++.++.++  ++.++.+++.+++++.|.++.  +...  .  
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~  290 (393)
T 1mdo_A          215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADLP--FQPLSLPSW  290 (393)
T ss_dssp             TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTSS--CEECCCCSS
T ss_pred             cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC--cccccCCCC
Confidence            10                   01    2347888888888777553  456666777777877776641  1111  1  


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +.++.+.++.+.+.++..     .....++.+.|.++||+++..
T Consensus       291 ~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~  329 (393)
T 1mdo_A          291 EHIHAWHLFIIRVDEARC-----GITRDALMASLKTKGIGTGLH  329 (393)
T ss_dssp             CEECCCSCEEEECCHHHH-----SSCHHHHHHHHHHTTBCCBCC
T ss_pred             CCCceeEEEEEEeccccc-----ccCHHHHHHHHHhCCCCcccc
Confidence            244566788888742000     001457889999999998753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.83  E-value=8.9e-20  Score=185.57  Aligned_cols=265  Identities=16%  Similarity=0.080  Sum_probs=172.7

Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~  212 (447)
                      +...+|.++...+|+++|+++.+  .+.+++++||++|++.+++.+.  ..++.||+.+++||+.........       
T Consensus        73 ~~y~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~-------  141 (414)
T 3ndn_A           73 YVYSRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALL--GAGDRLVAARSLFGSCFVVCSEIL-------  141 (414)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--CTTCEEEEESCCCHHHHHHHHTHH-------
T ss_pred             cCcCCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCccchHHHHHHHHH-------
Confidence            44456788999999999999985  4678999999999999998652  356889999999998543321100       


Q ss_pred             cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                        ...|+..+..|.       +|    .++|++.+..    ++++|++|++++++|.+.+    +++|.++|+++|+++|
T Consensus       142 --~~~g~~~~~v~~-------~d----~~~l~~ai~~----~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~li  200 (414)
T 3ndn_A          142 --PRWGVQTVFVDG-------DD----LSQWERALSV----PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVV  200 (414)
T ss_dssp             --HHTTCEEEEECT-------TC----HHHHHHHTSS----CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             --HHcCcEEEEeCC-------CC----HHHHHHhcCC----CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEE
Confidence              011333222221       13    5677777642    5779999999999998876    9999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccC-C-ccccccccCHHHHH-hhcCCcccccCCCChHHHHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-G-IPLGAVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G-~pigav~~~~~i~~-~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      +||+|+    +| .++....+|....+.+++|.+++ | +++|+++++++.+. .+...........+|+.+++++..++
T Consensus       201 vDe~~~----~~-~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~  275 (414)
T 3ndn_A          201 LDNVFA----TP-LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE  275 (414)
T ss_dssp             EECTTT----HH-HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred             EECCCc----cc-ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            999996    22 12222244553334457899987 7 89999999988765 44321111112236787777777665


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEeeCCCCCCCCHHHHHH
Q 013235          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLY  431 (447)
Q Consensus       370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~~~  431 (447)
                      .+..  ..++..+..+++.+.|++    ++.+..|                  +|.|.|++|++.....   ...+.+.+
T Consensus       276 ~l~~--r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~  346 (414)
T 3ndn_A          276 TLAI--RVQHSNASAQRIAEFLNG----HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFE  346 (414)
T ss_dssp             GHHH--HHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHHhc----CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHH
Confidence            5432  334444555555555543    3434333                  6789999999942100   00234667


Q ss_pred             HHHHHHhCCcee
Q 013235          432 IMDKMKGICALF  443 (447)
Q Consensus       432 ~~~~l~~~Gvlv  443 (447)
                      +.+.|...++.+
T Consensus       347 ~~~~l~~~~~~~  358 (414)
T 3ndn_A          347 VLDKMRLIDISN  358 (414)
T ss_dssp             HHHHCSSSEECS
T ss_pred             HHHhCccceEcC
Confidence            888777655443

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.82  E-value=4.1e-19  Score=177.14  Aligned_cols=293  Identities=13%  Similarity=0.047  Sum_probs=188.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccc-----chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~~~~-----~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~  173 (447)
                      .|||+.++      |+.+|.|.+|+.+++.... .....|.     .+...+++++|+++++.+.+++++++||++|++.
T Consensus         2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~   75 (382)
T 4eb5_A            2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL   75 (382)
T ss_dssp             CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred             eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence            37787654      4689999999999987631 1111122     3567889999999987656789999999999999


Q ss_pred             HHHHHHhh--cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       174 Aik~ar~~--t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      +++.+...  .+++.|++.+++|++.......+..          .|...+..|...  .+..|    .++|++.+.   
T Consensus        76 ~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~---  136 (382)
T 4eb5_A           76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR---  136 (382)
T ss_dssp             HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred             HHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCC--CCccC----HHHHHHHhc---
Confidence            99987621  3567899999999876544432211          122222222111  12224    567777664   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCC
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNG  329 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G  329 (447)
                       .++.+|+++..++++|.+.+    +++|.++|++||++ |+||+|+ +|...   +..+.+  .+|++++  +|.+|. 
T Consensus       137 -~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~---~~~~~~--~~di~~~s~sK~~g~-  203 (382)
T 4eb5_A          137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE---VDVEKI--GADMLTISSNDIYGP-  203 (382)
T ss_dssp             -TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC---CCHHHH--TCSEEEEETGGGTCC-
T ss_pred             -CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc---cCcccc--CCCEEEeehHHhcCC-
Confidence             25788999999999999876    89999999999999 9999996 54321   122222  4688865  597542 


Q ss_pred             ccccccccCHHHHHhhcCC-------cccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          330 IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~-------~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      ..+|+++++++.  .+...       .....+..|+.+++++.++|+.+++  +++.++.+++.+++.+.|+++    +.
T Consensus       204 ~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~  277 (382)
T 4eb5_A          204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE  277 (382)
T ss_dssp             SSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred             CceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CC
Confidence            137888887763  12211       1122344567777777788887654  245566666666766666543    22


Q ss_pred             eeeEee----cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          401 IGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       401 i~~vrg----~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.-+..    .+.++.+.+...         ...++.+.|.++||++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~  317 (382)
T 4eb5_A          278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQAST  317 (382)
T ss_dssp             EEECSCSSSBCTTEEEEEETTS---------CHHHHHHHHHHHTCBCBC
T ss_pred             eEEeCCcccCCCCEEEEEeCCc---------CHHHHHHHHHHCCEEEec
Confidence            221111    256777776310         135688888899999865

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.82  E-value=1e-19  Score=181.70  Aligned_cols=283  Identities=14%  Similarity=0.081  Sum_probs=175.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEE
Q 013235          111 VCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL  190 (447)
Q Consensus       111 ~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~  190 (447)
                      .+++|++|.+.+.+.+++.+.......+..+...+++++|+++++.  +.++|++||++|++.+++.+. ..++++|++.
T Consensus         6 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~   82 (373)
T 3frk_A            6 ASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNV--NYCIGCGNGLDALHLILKGYD-IGFGDEVIVP   82 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEE
T ss_pred             cCCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-CCCcCEEEEC
Confidence            3566666665555555444322112234577889999999999854  578999999999999998763 2356789999


Q ss_pred             cCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (447)
Q Consensus       191 ~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~  270 (447)
                      ..+|++........ +.          .+..++..  . ..+..|    .+++++.+.    +++++|+  | +++.|..
T Consensus        83 ~~~~~~~~~~~~~~-g~----------~~~~~~~~--~-~~~~~d----~~~l~~~l~----~~~~~v~--~-~n~~G~~  137 (373)
T 3frk_A           83 SNTFIATALAVSYT-GA----------KPIFVEPD--I-RTYNID----PSLIESAIT----EKTKAII--A-VHLYGQP  137 (373)
T ss_dssp             TTSCTHHHHHHHHH-SC----------EEEEECEE--T-TTTEEC----GGGTGGGCC----TTEEEEE--E-ECCTTCC
T ss_pred             CCCcHHHHHHHHHc-CC----------EEEEEecc--c-cccCcC----HHHHHHhcC----CCCeEEE--E-ECCCcCc
Confidence            99998855443222 11          11122111  0 011123    344555443    2667777  3 3456665


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccC-CccccccccC-HHHHHh
Q 013235          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEIAEV  344 (447)
Q Consensus       271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pigav~~~-~~i~~~  344 (447)
                      .+    +++|.++|+++|+++|+||+|+.    | ..+..+..+..+|++++|    |.+++ |. .|+++++ +++.+.
T Consensus       138 ~~----l~~i~~l~~~~~~~li~D~a~~~----g-~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~  207 (373)
T 3frk_A          138 AD----MDEIKRIAKKYNLKLIEDAAQAH----G-SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEK  207 (373)
T ss_dssp             CC----HHHHHHHHHHHTCEEEEECTTCT----T-CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHH
T ss_pred             cc----HHHHHHHHHHcCCEEEEECCccc----C-CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHH
Confidence            54    99999999999999999999972    2 122334556668999988    99987 64 6777765 456554


Q ss_pred             hcCC------------cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-ecc--e
Q 013235          345 LTRR------------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRG--F  409 (447)
Q Consensus       345 l~~~------------~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~G--l  409 (447)
                      +...            ..+.++..+++.+++++..++.+  +++.++.+++.+++++.|.++.  ........ +..  .
T Consensus       208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~  283 (373)
T 3frk_A          208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWY  283 (373)
T ss_dssp             HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCS
T ss_pred             HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeE
Confidence            4321            11235566888888887777654  3466777778888777776542  11111000 111  2


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .+.+..  .         ...++.+.|.++||.++..
T Consensus       284 ~~~~~~--~---------~~~~l~~~L~~~gI~v~~~  309 (373)
T 3frk_A          284 TFVIRS--E---------KRDELQKYLNNNGIGTLIH  309 (373)
T ss_dssp             SEEEEE--S---------SHHHHHHHHHHTTBCCBCS
T ss_pred             EEEEEe--C---------CHHHHHHHHHHCCCCcccC
Confidence            222322  1         1467889999999998854

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.82  E-value=1e-18  Score=176.87  Aligned_cols=296  Identities=13%  Similarity=0.080  Sum_probs=168.6

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHH-hcccc--ccc-cc----chHHHHHH-HHHHHhCCCCCceE-EEcCCHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHS--TVL-YL----NHAIADFA-EALASKMPGNLKVV-FFTNSGTE  169 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~~--~~~-~~----~~~~~ela-e~L~~~~~~~~~~v-~~~~sGse  169 (447)
                      +.+++.++..     +.||+|.+|+.+++. .+.+.  ... +.    .+...+++ +++++.++.  +.+ ++++||++
T Consensus        33 ~~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~v~~~~Gs~  105 (425)
T 3ecd_A           33 SQVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GHANVQPHSGAQ  105 (425)
T ss_dssp             HSEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SEEECCCSSHHH
T ss_pred             cceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CCceeecCchHH
Confidence            3566665443     348999999999884 32111  111 11    12445555 667777643  334 46999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccC-chhhhh-ccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGN-AAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~-~~~~~~-~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      |++.+++.+  ..+++.|++.+++||+. ..+... ..+          .++..++.+... ..+..|    .++|++.+
T Consensus       106 a~~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~-~~~~~d----~~~l~~~i  168 (425)
T 3ecd_A          106 ANGAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSG----------KWFNALQYGVSR-DTMLID----YDQVEALA  168 (425)
T ss_dssp             HHHHHHHHH--CCTTCEEEEECC----------------------------CEEEEECCCT-TTSSCC----HHHHHHHH
T ss_pred             HHHHHHHHc--cCCCCEEEEcccccccceecchhhhhcc----------cceeeeecCCCc-ccCccC----HHHHHHHH
Confidence            999999876  34678999999999872 222211 111          112222222110 113334    57787777


Q ss_pred             HccCCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCccccCCCcccccccCCCCCEEE--ee
Q 013235          248 DFGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVT--MA  323 (447)
Q Consensus       248 ~~~~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGfgr~G~~~~~~~~~gv~pDivt--~s  323 (447)
                      ...   ++++|+++ |++|       ....+++|+++|++||+++|+||+| +|+.+.| ..+..  .. .+|+++  ++
T Consensus       169 ~~~---~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~~~~--~~-~~di~~~s~s  234 (425)
T 3ecd_A          169 QQH---KPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAG-RHANP--VE-HAHVVTSTTH  234 (425)
T ss_dssp             HHH---CCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCG--GG-TCSEEEEESS
T ss_pred             hhc---CCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcc-cccCc--hh-cCcEEEecCC
Confidence            532   35677777 5553       3445899999999999999999995 5655555 23221  11 168875  55


Q ss_pred             ccccCCccccccccC-HHHHHhhcCCcccccC-CCChHHHHHHHHHH-HHHhh--hhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235          324 KGIGNGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVL-KVIQK--DKLQNNAHVVGSYLKERLTALKDKY  398 (447)
Q Consensus       324 K~lg~G~pigav~~~-~~i~~~l~~~~~~~T~-~~np~a~aaala~L-~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~  398 (447)
                      |++ +|.+.|+++++ +++.+.+.......+. +.++..++++.+++ +.+++  +++.++++++.+++++.|.+.  .+
T Consensus       235 K~l-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~  311 (425)
T 3ecd_A          235 KTL-RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG--GV  311 (425)
T ss_dssp             GGG-CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             ccc-CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence            999 45678999988 5677666542222222 23333333333334 33333  267788888888888888773  22


Q ss_pred             CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       399 ~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ..+. -.+.+.++++.+.....       ....+.+.|.++||++.
T Consensus       312 ~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~  349 (425)
T 3ecd_A          312 DLVT-GGTDNHLLLVDLRPKGL-------KGAQVEQALERAGITCN  349 (425)
T ss_dssp             EEGG-GSCSSSEEEEECGGGTC-------CHHHHHHHHHHTTEECE
T ss_pred             eecc-CCCCceEEEEEeCCCCC-------CHHHHHHHHHHcCCEec
Confidence            1111 01457788887743210       13567778888999987

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.82  E-value=4.9e-19  Score=178.88  Aligned_cols=261  Identities=14%  Similarity=0.017  Sum_probs=167.5

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..++.++...+++++|+++++.  +.+++++||++|++.+++.+.  .+++.|++.+++||+.......+..        
T Consensus        59 ~~r~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~--------  126 (398)
T 1gc0_A           59 YSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHGIG--------  126 (398)
T ss_dssp             ----CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHTGG--------
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--cCCCEEEEeCCCchhHHHHHHHHHH--------
Confidence            3456788899999999999865  367788999999999999763  3567899999999986554322111        


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                       ..|+.....+.       .|    .+++++.+.    +++++|++|++++++|.+.+    +++|.++|++||+++|+|
T Consensus       127 -~~g~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D  186 (398)
T 1gc0_A          127 -EFGVKLRHVDM-------AD----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVD  186 (398)
T ss_dssp             -GGTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEE
T ss_pred             -HcCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEE
Confidence             01222222221       13    566776664    27889999999999998875    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEEeeccccC-Cccc-cccccCHHHHH-hhcCCccc-ccCCCChHHHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYF-NTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-gav~~~~~i~~-~l~~~~~~-~T~~~np~a~aaala~L~~  370 (447)
                      |+|+.+ ..+ ..   ..++....+.+++|.+++ |.|+ |++++++++++ .+....+. .+...||+++++++++|+.
T Consensus       187 ~~~~~~-~~~-~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  261 (398)
T 1gc0_A          187 NTYCTP-YLQ-RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT  261 (398)
T ss_dssp             CTTTHH-HHC-CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred             CCCccc-ccC-Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch
Confidence            999744 223 11   123443334468899995 6887 88999988765 45433333 3456789999998888875


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHH----------Hh---cCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALK----------DK---YGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM  436 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~----------~~---~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l  436 (447)
                      +.  ...++..+..+.+.+.|++..          ..   +.+.. ..++.|.|+.+++..+          ...+.+.+
T Consensus       262 ~~--~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~l  329 (398)
T 1gc0_A          262 LN--LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IGAGRRFM  329 (398)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH----------HHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HHHHHHHH
Confidence            42  234444555555555554421          00   01111 1246789999988321          12344455


Q ss_pred             HhCCceee
Q 013235          437 KGICALFF  444 (447)
Q Consensus       437 ~~~Gvlv~  444 (447)
                      .+.|+.+.
T Consensus       330 ~~~~i~~~  337 (398)
T 1gc0_A          330 NALQLFSR  337 (398)
T ss_dssp             HHCSSSEE
T ss_pred             HhCCCcee
Confidence            66676653

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.82  E-value=1e-19  Score=187.61  Aligned_cols=311  Identities=12%  Similarity=0.048  Sum_probs=202.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-c----c--ccchHHHHHHHHHHHhCCCCCceEEEcCCHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-V----L--YLNHAIADFAEALASKMPGNLKVVFFTNSGTE  169 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~----~--~~~~~~~elae~L~~~~~~~~~~v~~~~sGse  169 (447)
                      ++..|+|..      ++|+.++.+.+++.++++...... .    .  ...+...+++++|+++++.+.++|+|++|+++
T Consensus        66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~  139 (465)
T 3e9k_A           66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV  139 (465)
T ss_dssp             CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred             CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence            456677742      568778889888888876542111 0    0  11234467888899988776788999999999


Q ss_pred             HHHHHHHHHHhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          170 ANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       170 A~e~Aik~ar~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +++.+++..... ..+++|++..++||+......+..........  ...+...+.+.    .+..|    .+++++.++
T Consensus       140 al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~--~~~v~~~~~~~----~~~~d----~~~l~~~i~  209 (465)
T 3e9k_A          140 NLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIE--ESMRMIKPREG----EETLR----IEDILEVIE  209 (465)
T ss_dssp             HHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHH--HHEEEECCCTT----CSSCC----HHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcce--eeeEEEecCCC----CCccC----HHHHHHHHH
Confidence            999999866322 24567999999999866533322110000000  00011122111    12124    577887776


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccc
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGI  326 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~l  326 (447)
                      +.. +++++|+++.+++.+|.+.+    +++|.++|++||+++|+|++|+ +|..   ....+.+  ..|+++  +.|.+
T Consensus       210 ~~~-~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~---~~~~~~~--~~D~~~~s~~K~l  278 (465)
T 3e9k_A          210 KEG-DSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV---ELYLHDW--GVDFACWCSYKYL  278 (465)
T ss_dssp             HHG-GGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---CCCHHHH--TCCEEEECSSSTT
T ss_pred             hcC-CCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc---CCchhhc--CCCEEEECccccc
Confidence            432 37899999999999999987    8999999999999999999996 3322   1122223  357776  45999


Q ss_pred             cCC-ccccccccCHHHHHhhcCCccc---c----------------------cCCCChHHHHHHHHHHHHHhh---hhHH
Q 013235          327 GNG-IPLGAVVTTPEIAEVLTRRNYF---N----------------------TFGGNPVCTAAGHAVLKVIQK---DKLQ  377 (447)
Q Consensus       327 g~G-~pigav~~~~~i~~~l~~~~~~---~----------------------T~~~np~a~aaala~L~~i~~---~~l~  377 (447)
                      .+| .++|++++++++.+.+.....+   +                      ....|++++++..++|+.+++   +++.
T Consensus       279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~  358 (465)
T 3e9k_A          279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR  358 (465)
T ss_dssp             CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence            544 4689999999887665432110   0                      014567888888889988765   4577


Q ss_pred             HHHHHHHHHHHHHHHHHHH---------hcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          378 NNAHVVGSYLKERLTALKD---------KYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~---------~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++.+++.+++.+.|+++..         .+.++.  +.+++|.++.+.+..+          ..++.+.|.++||++.
T Consensus       359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~  426 (465)
T 3e9k_A          359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCD  426 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECE
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEe
Confidence            8888888888888877521         111111  2234588888887421          2358889999999875

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.82  E-value=6.5e-19  Score=175.16  Aligned_cols=293  Identities=13%  Similarity=0.043  Sum_probs=187.7

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-cc-----ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-ST-----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~-----~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~  173 (447)
                      .|||+.++      +..+|.|.+|+.+++..... ..     ..+..+...+++++|++.++.+.+++++++||++|++.
T Consensus         2 iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~   75 (382)
T 4hvk_A            2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL   75 (382)
T ss_dssp             CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred             EeecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence            37776543      35789999999999876421 11     11234566789999999998766789999999999999


Q ss_pred             HHHHHHhh--cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       174 Aik~ar~~--t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      +++.....  .+++.|++.++.|++.......+..          .|+..+..|...  .+..|    .++|++.+.   
T Consensus        76 ~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~---  136 (382)
T 4hvk_A           76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR---  136 (382)
T ss_dssp             HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHH----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred             HHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHh----------cCCEEEEeccCC--CCCcC----HHHHHHHhc---
Confidence            99866421  3567899988888876554332210          122222222111  11124    567777664   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCC
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNG  329 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G  329 (447)
                       +++++|++++.++++|.+.+    +++|.++|++||+ +|+||+|+ +|..   .+..+.++  +|+++++  |.+| +
T Consensus       137 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~---~~~~~~~~--~d~~~~s~~K~~g-~  203 (382)
T 4hvk_A          137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI---EVDVEKIG--ADMLTISSNDIYG-P  203 (382)
T ss_dssp             -TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB---CCCHHHHT--CSEEEEESGGGTS-C
T ss_pred             -cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC---CCCchhcC--CCEEEEeHHHhcC-C
Confidence             26789999999999998876    9999999999999 99999986 3321   12223333  5787654  9543 3


Q ss_pred             ccccccccCHHHHHhhcCCcc-------cccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          330 IPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~-------~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      ..+|+++++++.  .+....+       ..+...|+.++++..++|+.+++  +++.++.+++.+++.+.|+++    +.
T Consensus       204 ~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~  277 (382)
T 4hvk_A          204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE  277 (382)
T ss_dssp             TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred             CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CC
Confidence            347888877654  2222111       12344577888888888886654  345666667777777666543    22


Q ss_pred             eeeEe----ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          401 IGDVR----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       401 i~~vr----g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.-..    +.+.++.+.+...         ...++.+.|.++||++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~  317 (382)
T 4hvk_A          278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQAST  317 (382)
T ss_dssp             EEECSCSSSBCTTEEEEEETTC---------CHHHHHHHHHHTTCBCBC
T ss_pred             eEEeCCccccCCCEEEEEECCC---------CHHHHHHHHHHCCEEEee
Confidence            22111    1134566665211         135688899999999874

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.82  E-value=4.3e-20  Score=183.14  Aligned_cols=301  Identities=14%  Similarity=0.079  Sum_probs=180.5

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccc-chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~-~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai  175 (447)
                      |+|+|.+++..-..+| +||.+.+++.++++...  .....|. ++...+|+++|+++++.  +..++++||++|++.++
T Consensus         3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~~~i~~~~G~~a~~~al   79 (357)
T 3lws_A            3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM--DDAVFFPSGTMAQQVAL   79 (357)
T ss_dssp             CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHH
T ss_pred             chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHH
Confidence            4566644444434556 57888888888887632  1122343 57788999999999854  44567799999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      +.+... +.+++|+..+.+|..........         ...|+..++.|..   .+..|    .+++++.     + ++
T Consensus        80 ~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~---~~~~d----~~~l~~~-----~-~~  136 (357)
T 3lws_A           80 RIWSDE-TDNRTVAYHPLCHLEIHEQDGLK---------ELHPIETILVGAA---DRLMT----LDEIKAL-----P-DI  136 (357)
T ss_dssp             HHHHHH-HTCCEEEECTTCHHHHSSTTHHH---------HHSSCEEEECSCT---TSCCC----HHHHHTC-----C-SC
T ss_pred             HHHhhc-CCCcEEEecccceeeeeccchhh---------hccCcEEEEecCC---CCCcC----HHHHhcC-----c-Cc
Confidence            876543 22225666666664332210000         0013333333321   11234    4555543     2 26


Q ss_pred             EEEEEccccCCC-ceeeCCCChHHHHHHHHHHhCCEEEEecccc-----CccccCCCcccccccCCCCCEE--Eeecccc
Q 013235          256 AGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQA-----GFARTGSHFWGFEAHGVVPDIV--TMAKGIG  327 (447)
Q Consensus       256 aavi~Epi~~~g-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-----Gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg  327 (447)
                      +++++++.++++ |. .++.+.+++|.++|++||++||+||+|.     .++++. ..+     ....|++  +++|+++
T Consensus       137 ~~v~~~~p~np~~G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~-----~~~~d~~~~s~sK~~~  209 (357)
T 3lws_A          137 ACLLLELPQREIGGV-APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTA-AEI-----AGLFDSIYISFYKGLG  209 (357)
T ss_dssp             SEEEEESSBGGGTSB-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCH-HHH-----HTTSSEEEEESSSTTC
T ss_pred             ceEEEEcccccCCce-eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCCh-HHH-----HhcCCEEEEeccccCC
Confidence            778888777665 65 4578899999999999999999999875     122222 111     1123555  7999995


Q ss_pred             CCccccccccCHHHHHhhcCCc--cc-ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee-
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRN--YF-NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD-  403 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~--~~-~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-  403 (447)
                      +... |++++++++++.+....  +. +++..++. ++++.++|+... + ..++..+..+++.+.|+++    +.+.- 
T Consensus       210 ~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~-~~~~~~~~~~~l~~~L~~~----~g~~~~  281 (357)
T 3lws_A          210 GIAG-AILAGPAAFCQTARIWKRRYGGDLISLYPY-IVSADYYYELRK-D-RMGQYYEQAKQLAEQFNAL----PGVHTT  281 (357)
T ss_dssp             CSSC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHH-HHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHTS----TTEEEE
T ss_pred             CCce-EEEEcCHHHHHHHHHHHHHhcCCcccchHH-HHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhC----CCCeec
Confidence            4222 88889999988775321  11 22333344 445556776522 2 2334456666777766553    32322 


Q ss_pred             -EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          404 -VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       404 -vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                       .+..+.++++++...      ......++.+.|.++||++.+.
T Consensus       282 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~Gi~v~~g  319 (357)
T 3lws_A          282 PEVPVSNMFHLHFDGQ------AADISPKLEQVQEETGLGFVGY  319 (357)
T ss_dssp             SSSCSSSEEEEEEESC------HHHHHHHHHHHHHHHCEESCSC
T ss_pred             cCCCcceEEEEEecCC------hHHHHHHHHHHHHhcCeEEecc
Confidence             245678888887431      1122467888999999998764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.82  E-value=1.5e-19  Score=181.76  Aligned_cols=278  Identities=17%  Similarity=0.138  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      +++.+++.+.+......   ...+...+++++|+++++.  +.+++++||++|++.+++.++ ..++++|++..++|++.
T Consensus        36 ~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~--~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~  109 (391)
T 3dr4_A           36 GNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGV--KHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIAS  109 (391)
T ss_dssp             SSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHH
T ss_pred             HHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHH
Confidence            66777777777653221   2467889999999999854  478899999999999999773 23567899999999987


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      ...+...+.           .+..++..  . ..+..|    .+++++.+.    .++++|+++   +++|.+.+    +
T Consensus       110 ~~~~~~~g~-----------~~~~~~~~--~-~~~~~d----~~~l~~~~~----~~~~~v~~~---n~tG~~~~----~  160 (391)
T 3dr4_A          110 ANSVTYCGA-----------TPVLVDND--P-RTFNLD----AAKLEALIT----PRTKAIMPV---HLYGQICD----M  160 (391)
T ss_dssp             HHHHHHTTC-----------EEEEECBC--T-TTCSBC----GGGSGGGCC----TTEEEECCB---CGGGCCCC----H
T ss_pred             HHHHHHCCC-----------EEEEEecC--c-cccCcC----HHHHHHhcC----CCceEEEEE---CCCCChhh----H
Confidence            655433211           12222211  0 112223    344554443    266777743   35666554    9


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcCC-cc-
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR-NY-  350 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~~-~~-  350 (447)
                      ++|.++|+++|+++|+||+|+. |.    .+.-...+..+|++++|    |++++| +.|+++++ +++.+.+... .+ 
T Consensus       161 ~~i~~l~~~~~~~li~D~a~~~-g~----~~~~~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g  234 (391)
T 3dr4_A          161 DPILEVARRHNLLVIEDAAEAV-GA----TYRGKKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQG  234 (391)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCT-TC----EETTEETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTT
T ss_pred             HHHHHHHHHcCCEEEEECcccc-cc----eECCeeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcC
Confidence            9999999999999999999972 21    11112344557899888    999875 46777765 5565554321 11 


Q ss_pred             ------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee-----EeecceeEEE
Q 013235          351 ------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD-----VRGRGFLLGV  413 (447)
Q Consensus       351 ------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-----vrg~Gl~~gi  413 (447)
                                  ...+..+++.+++++..++.+  +++.++.+++.+++++.|.++  .......     .+..+.++.+
T Consensus       235 ~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i  310 (391)
T 3dr4_A          235 MDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTV  310 (391)
T ss_dssp             CCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEE
T ss_pred             CCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEE
Confidence                        123567788888877777655  346778888888888888876  3322221     2334455677


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .+.+...      ....++.+.|.++||.++..
T Consensus       311 ~~~~~~~------~~~~~l~~~L~~~GI~v~~~  337 (391)
T 3dr4_A          311 RLGEGLS------TTRDQVIKDLDALGIESRPV  337 (391)
T ss_dssp             EECSSCS------SCHHHHHHHHHHTTCCCEEC
T ss_pred             EECCccc------hhHHHHHHHHHHCCCceeec
Confidence            7643100      11467899999999998754

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.81  E-value=5.9e-20  Score=185.78  Aligned_cols=289  Identities=12%  Similarity=0.054  Sum_probs=162.2

Q ss_pred             CCCHHHHHHHHHHHHh-c--cccccc-c----cchHHHHHH-HHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCC
Q 013235          115 HCHPYVVDSIVNQIKR-I--QHSTVL-Y----LNHAIADFA-EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~-~--~~~~~~-~----~~~~~~ela-e~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~  185 (447)
                      |.||+|.+|+.+++.. .  .+.... +    ..+...+++ +++++.++.+.+. ++++||++|++.+++...  .+++
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-v~~~sGs~a~~~a~~~~~--~~gd  117 (420)
T 3gbx_A           41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYAN-VQPHSGSQANFAVYTALL--QPGD  117 (420)
T ss_dssp             CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHHC--CTTC
T ss_pred             CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCce-eEecCcHHHHHHHHHHhc--CCCC
Confidence            4689999999998844 2  111111 1    122334434 6777777654443 356889999999998653  3567


Q ss_pred             eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE-cccc
Q 013235          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS-ESIQ  264 (447)
Q Consensus       186 ~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~-Epi~  264 (447)
                      .|++..++|++..........        ...++..++.+..  ..+..|    .++|++.+...   ++++|++ +|++
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~--~~~~~d----~~~l~~~i~~~---~~~~v~~~~~~~  180 (420)
T 3gbx_A          118 TVLGMNLAQGGHLTHGSPVNF--------SGKLYNIVPYGID--ESGKID----YDEMAKLAKEH---KPKMIIGGFSAY  180 (420)
T ss_dssp             EEEEEEEC------------C--------HHHHSEEEEEEEC--TTCSCC----HHHHHHHHHHH---CCSEEEECCTTC
T ss_pred             EEEecchhhcceeccchhhhh--------cccceeEEeccCC--ccCCcC----HHHHHHHHHhc---CCeEEEEecCcc
Confidence            788777776552211110000        0001122222111  122245    56777777642   3567777 5555


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCccccCCCcccccccCCCCCEEE--eeccccCCccccccccCH--
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTP--  339 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav~~~~--  339 (447)
                      +   ...+    +++|+++|++||++||+||+| .|+.+.| .+...  .. .+|+++  ++|+++ |.+.|++++++  
T Consensus       181 ~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~  248 (420)
T 3gbx_A          181 S---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAG-VYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGD  248 (420)
T ss_dssp             C---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTT-SSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCC
T ss_pred             C---CccC----HHHHHHHHHHcCCEEEEECCcchhceecc-cCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCc
Confidence            3   2332    999999999999999999997 4555555 22221  11 389997  569997 44458888887  


Q ss_pred             -HHHHhhcCCcccccCCCChHHHH-HHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235          340 -EIAEVLTRRNYFNTFGGNPVCTA-AGHAVLKVIQ-K--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       340 -~i~~~l~~~~~~~T~~~np~a~a-aala~L~~i~-~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                       ++++.+....+.+++++++.... ++..++..+. +  +++.++++++.+++++.|.+.  .+..+. -...+.++++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~~~~~~~  325 (420)
T 3gbx_A          249 EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR--GYKVVS-GGTENHLFLLD  325 (420)
T ss_dssp             HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-GSCSSSEEEEE
T ss_pred             HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc--CCeecc-CCCCCeEEEEE
Confidence             77777654333344444433333 3233444332 2  346777888888888888763  221111 01356777777


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.....       ....+.+.|.++||++.+
T Consensus       326 ~~~~~~-------~~~~~~~~l~~~gi~v~~  349 (420)
T 3gbx_A          326 LVDKNL-------TGKEADAALGRANITVNK  349 (420)
T ss_dssp             CGGGTC-------CHHHHHHHHHHTTEECEE
T ss_pred             cCCCCC-------CHHHHHHHHHHCCcEecc
Confidence            643210       134577788889999875

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.81  E-value=2.1e-19  Score=182.90  Aligned_cols=293  Identities=17%  Similarity=0.143  Sum_probs=177.5

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccc-----chHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~~~~-----~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      ++..|||+.++.      +.+|.|.+|+.+++.... +....|.     .+...+++++|+++++.+.++|+|++||++|
T Consensus        17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   90 (432)
T 3a9z_A           17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES   90 (432)
T ss_dssp             -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred             CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence            577899876542      689999999999987632 1112221     2345789999999987666789999999999


Q ss_pred             HHHHHHHHHh-h-----cCCCeEEEEcCCcccCchhhhhc-cCCCC---ccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235          171 NELAIMMARL-Y-----TGCNDIISLRNAYHGNAAGTMGA-TAQSN---WKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (447)
Q Consensus       171 ~e~Aik~ar~-~-----t~~~~ii~~~~~yHG~~~~~~~~-t~~~~---~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (447)
                      ++.+++.+.. +     .++++|++..++||+......+. ...+.   +..-....|...+..|.... .+..|    .
T Consensus        91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d----~  165 (432)
T 3a9z_A           91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVE----V  165 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCC----H
T ss_pred             HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcC----H
Confidence            9999998741 1     25588999999999863111100 00000   00000012333322222110 11123    5


Q ss_pred             HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC----------CEEEEeccccCccccCCCcccc
Q 013235          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG----------GLCIADEVQAGFARTGSHFWGF  310 (447)
Q Consensus       241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~tGfgr~G~~~~~~  310 (447)
                      ++|++.+.    .++++|+++++++++|.+.+    +++|.++|+++|          +++|+||+| ++|...   ...
T Consensus       166 ~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~---~~~  233 (432)
T 3a9z_A          166 EDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRR---VDV  233 (432)
T ss_dssp             HHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSC---CCH
T ss_pred             HHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCcc---cCh
Confidence            66666553    26789999999999999887    899999999999          999999999 455432   112


Q ss_pred             cccCCCCCEEEe--eccccCCccccccccCHHH-HHhhcCC-------cccccCCCChHHHHHHHHHHHHHhh--hhHHH
Q 013235          311 EAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEI-AEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQN  378 (447)
Q Consensus       311 ~~~gv~pDivt~--sK~lg~G~pigav~~~~~i-~~~l~~~-------~~~~T~~~np~a~aaala~L~~i~~--~~l~~  378 (447)
                      .  ...+|++++  +|.+  |.++|++++++++ ...+...       ....++..|+.+++++.++|+.+++  +++.+
T Consensus       234 ~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~  309 (432)
T 3a9z_A          234 E--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEA  309 (432)
T ss_dssp             H--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHH
Confidence            2  234788865  8976  4569999998775 2223221       1223456788888888889987765  46778


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCe--e---eEeecceeEEEEEee
Q 013235          379 NAHVVGSYLKERLTALKDKYGII--G---DVRGRGFLLGVEFVT  417 (447)
Q Consensus       379 ~~~~~g~~l~~~L~~l~~~~~~i--~---~vrg~Gl~~giel~~  417 (447)
                      +++++.++|.+.|+++.. ..+.  .   ..+..+.++.+.+.+
T Consensus       310 ~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  352 (432)
T 3a9z_A          310 HMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQG  352 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECS
T ss_pred             HHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCC
Confidence            888888899888887531 1111  1   112346677777753

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.81  E-value=2.5e-18  Score=174.97  Aligned_cols=283  Identities=14%  Similarity=0.070  Sum_probs=180.9

Q ss_pred             EecCCcccccCCCCCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHh
Q 013235          103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL  180 (447)
Q Consensus       103 D~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~  180 (447)
                      ||..|..  .++ .+|++.+++.+.++...     |.  .+...+++++|+++++  .+++++++||++|++.+++.+. 
T Consensus        20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~l~~l~-   88 (424)
T 2po3_A           20 PLLVGRP--NRI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAG--VRHAVATCNATAGLQLLAHAAG-   88 (424)
T ss_dssp             CEETTCC--CCC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHHT-
T ss_pred             cccccCC--CCC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcC-
Confidence            4554444  445 46799999988887532     34  3778899999999985  3689999999999999999764 


Q ss_pred             hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235          181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (447)
Q Consensus       181 ~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~  260 (447)
                        .+++|++.+++|++........             |...+..|... ..+..|    .++|++.+.   + ++++|++
T Consensus        89 --~gd~Vlv~~~~~~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~---~-~~~~v~~  144 (424)
T 2po3_A           89 --LTGEVIMPSMTFAATPHALRWI-------------GLTPVFADIDP-DTGNLD----PDQVAAAVT---P-RTSAVVG  144 (424)
T ss_dssp             --CCSEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCT-TTSSBC----HHHHGGGCC---T-TEEEEEE
T ss_pred             --CCCEEEECCCccHHHHHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhhC---c-CCcEEEE
Confidence              3488999999999876543221             22222222111 112223    456665553   2 5667776


Q ss_pred             ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee----ccccCCcccccc
Q 013235          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAV  335 (447)
Q Consensus       261 Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav  335 (447)
                      .+   .+|...    .+++|.++|+++|+++|+||+|+ |+.+.| ..     .+..+|++++|    |++++ .++|++
T Consensus       145 ~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~-~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~  210 (424)
T 2po3_A          145 VH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDG-RP-----AGSLGDAEVFSFHATKAVNA-FEGGAV  210 (424)
T ss_dssp             EC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EE-----TTSSSSEEEEECCTTSSSCC-SSCEEE
T ss_pred             EC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECC-ee-----cccccCEEEEeCCCCCCccC-CCCeEE
Confidence            43   456543    49999999999999999999998 776655 21     22336888766    88877 689999


Q ss_pred             ccC-HHHHHhhcCCc-c-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          336 VTT-PEIAEVLTRRN-Y-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       336 ~~~-~~i~~~l~~~~-~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      +++ +++++.+.... +           ..++..+++++++++..++.++  ++.++.+++.+++++.|.++    +.+.
T Consensus       211 v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~  284 (424)
T 2po3_A          211 VTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLADL----PGVL  284 (424)
T ss_dssp             EESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC----TTEE
T ss_pred             EeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCcc
Confidence            998 88877654311 1           0122345788887777666543  35666666666666665543    2222


Q ss_pred             eEe---e-c--ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          403 DVR---G-R--GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       403 ~vr---g-~--Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      -+.   | .  ..++.+.+.+....     ....++.+.|.++||++..
T Consensus       285 ~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~L~~~gI~v~~  328 (424)
T 2po3_A          285 VADHDRHGLNNHQYVIVEIDEATTG-----IHRDLVMEVLKAEGVHTRA  328 (424)
T ss_dssp             ECCGGGGSCCCCCCEEEEECHHHHS-----SCHHHHHHHHHHTTEECBC
T ss_pred             ccCCCCCCccccEEEEEEECCccch-----hhHHHHHHHHHHCCCceec
Confidence            111   2 1  14566666320000     0135688889999999875

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.81  E-value=7.4e-19  Score=180.40  Aligned_cols=298  Identities=14%  Similarity=0.095  Sum_probs=175.7

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHH-hcccc--ccccc--c---hHHHHHH-HHHHHhCCCCCceEEE-cCCHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHS--TVLYL--N---HAIADFA-EALASKMPGNLKVVFF-TNSGTEA  170 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~~--~~~~~--~---~~~~ela-e~L~~~~~~~~~~v~~-~~sGseA  170 (447)
                      .|++.++-.     +.+|+|.+|+.+++. .+.+.  ...+.  .   ....+++ +++++.++.  +.+.+ ++||++|
T Consensus        47 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~--~~~~v~~~sGs~a  119 (447)
T 3h7f_A           47 TLEMIASEN-----FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA--EFANVQPHSGAQA  119 (447)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHHH
T ss_pred             ceeEecCCC-----CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC--CceEEEeCCHHHH
Confidence            355554332     348999999998885 33221  11111  1   1335567 888888854  34555 9999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCc-hhh-hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNA-AGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~-~~~-~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      ++.+++.++.  .++.|++.+++|++.. .+. +...+.          .+..++.|... ..+..|    .+++++.+.
T Consensus       120 ~~~a~~~~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i~  182 (447)
T 3h7f_A          120 NAAVLHALMS--PGERLLGLDLANGGHLTHGMRLNFSGK----------LYENGFYGVDP-ATHLID----MDAVRATAL  182 (447)
T ss_dssp             HHHHHHHHCC--TTCEEEEECGGGTCCGGGTCTTSHHHH----------SSEEEEECCCT-TTCSCC----HHHHHHHHH
T ss_pred             HHHHHHHhcC--CCCEEEecCcccccccchhhhhhhcCC----------eeEEEEcCcCc-ccCCcC----HHHHHHHHH
Confidence            9999987653  5688999999987732 211 111110          11222222110 112234    577777775


Q ss_pred             ccCCCCeEEEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCccccCCCcccccccCCCCCEE--Eeec
Q 013235          249 FGTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMAK  324 (447)
Q Consensus       249 ~~~~~~~aavi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGfgr~G~~~~~~~~~gv~pDiv--t~sK  324 (447)
                      ..   ++.++++ .|+++.++       ++++|+++|++||++||+||+| +|+.+.| .....  .. ..|++  +++|
T Consensus       183 ~~---~~~~i~~~~~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~--~~-~~di~~~s~sK  248 (447)
T 3h7f_A          183 EF---RPKVIIAGWSAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSP--VP-HADVVSTTVHK  248 (447)
T ss_dssp             HH---CCSEEEEECSSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCS--TT-TCSEEEEESSG
T ss_pred             hc---CCeEEEEcCCCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCC--CC-CCcEEEecCCc
Confidence            42   2335555 56665432       5999999999999999999996 5555555 22211  11 24777  4689


Q ss_pred             cccCCccccccccCHHHHHhhcCCcccccCCCChH-HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235          325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPV-CTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI  400 (447)
Q Consensus       325 ~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~-a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~  400 (447)
                      +++ |.+.|++++++++++.+....+..++++++. .++++.+++..+.+   +++.+++.++.+++.+.|.++..+.+.
T Consensus       249 ~l~-G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g  327 (447)
T 3h7f_A          249 TLG-GGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG  327 (447)
T ss_dssp             GGC-CCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred             CCC-CCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            995 6788999999998887765433344554333 34555555655443   246777888888888888765211111


Q ss_pred             eeeEe--ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          401 IGDVR--GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       401 i~~vr--g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +..+.  ..+.++.+++....    .   ....+.+.|.++||++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~l~~~GI~v~  366 (447)
T 3h7f_A          328 VSVVSGGTDVHLVLVDLRDSP----L---DGQAAEDLLHEVGITVN  366 (447)
T ss_dssp             CEEGGGSCSSSEEEEECTTSS----C---CHHHHHHHHHHTTEECB
T ss_pred             eEEecCCCCCCEEEEEcCCCC----C---CHHHHHHHHHHCCeEEe
Confidence            21111  23456666653211    0   12345556667799987

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.81  E-value=6.3e-20  Score=192.66  Aligned_cols=210  Identities=14%  Similarity=0.043  Sum_probs=137.2

Q ss_pred             cccCCCCCHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHh----CCCC-CceEEEcCCHHHHHHHHHHHH--H-h
Q 013235          110 TVCCGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASK----MPGN-LKVVFFTNSGTEANELAIMMA--R-L  180 (447)
Q Consensus       110 ~~~lGh~~p~v~~A~~~~l~~~~~~-~~~~~~~~~~elae~L~~~----~~~~-~~~v~~~~sGseA~e~Aik~a--r-~  180 (447)
                      ....++.+|++++++.+++....+. ...+......++++.+.+.    .+.. .++|++++||++|+..+++..  + .
T Consensus       110 ~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l  189 (533)
T 3f6t_A          110 HTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL  189 (533)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence            3445667899999999888764443 2233345556666666554    2211 368999999999999999852  1 1


Q ss_pred             hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235          181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (447)
Q Consensus       181 ~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~  260 (447)
                      ..+++.|++.+++|++..........           .+..++.+......|+.|    .++|++.+.   + ++.+|++
T Consensus       190 ~~~gd~Viv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~d----~~~l~~~l~---~-~~k~v~l  250 (533)
T 3f6t_A          190 LKKGDKIAINEPIFTPYLRIPELKDY-----------ELVEVDLHSYEKNDWEIE----PNEIEKLKD---P-SIKALIV  250 (533)
T ss_dssp             SCTTCEEEEESSCCHHHHTSGGGGGS-----------EEEEECCCEETTTTSEEC----HHHHHHHSC---T-TEEEEEE
T ss_pred             cCCcCEEEEcCCCcHHHHHHHHHcCC-----------eEEEEEecCCcccCCCCC----HHHHHHHhC---C-CCeEEEE
Confidence            23458899999999876544332211           223333221111223334    566776653   2 5666666


Q ss_pred             ccccCCCceeeCCCChHHHHHHHHH-HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-CCccccccccC
Q 013235          261 ESIQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTT  338 (447)
Q Consensus       261 Epi~~~gG~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pigav~~~  338 (447)
                      +..++++|.+. +.+.+++|.++|+ +||+++|+||+|.+|...+..+.. ...+....+.+|||.+| .|+|+|+++++
T Consensus       251 ~~p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~  328 (533)
T 3f6t_A          251 VNPTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYS-VVPYNTMLVYSYSKLFGCTGWRLGVIALN  328 (533)
T ss_dssp             ESSCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHH-HSGGGEEEEEESHHHHTCGGGCEEEEEEE
T ss_pred             eCCCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhh-cCCCCEEEEecCcccCCCcccceEEEEEC
Confidence            55567777765 6778999999999 689999999999998765422222 12233455668999998 79999999998


Q ss_pred             HH
Q 013235          339 PE  340 (447)
Q Consensus       339 ~~  340 (447)
                      ++
T Consensus       329 ~~  330 (533)
T 3f6t_A          329 EK  330 (533)
T ss_dssp             SS
T ss_pred             cH
Confidence            76

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.81  E-value=2.8e-19  Score=177.31  Aligned_cols=291  Identities=15%  Similarity=0.039  Sum_probs=175.2

Q ss_pred             CcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCe
Q 013235          107 GIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND  186 (447)
Q Consensus       107 g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~  186 (447)
                      +.+.+++| .||+|.+|+.+.+..    ...++++...+|+++|+++++.  +..++++||++|++.+++.+... +.+.
T Consensus        19 ~~~~~~~g-~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~i~~~~g~~a~~~a~~~~~~~-g~~~   90 (359)
T 3pj0_A           19 GNGPRNVG-VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGK--QSAVFFPSGTMAQQIALRIWADR-KENR   90 (359)
T ss_dssp             SSSCCBHH-HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHHHH-HTCC
T ss_pred             CCCccccC-CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHHhc-CCCc
Confidence            33444555 578888877763322    2234577889999999999854  34467799999999999977653 3344


Q ss_pred             EEEEcCCcccCch--hhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccc
Q 013235          187 IISLRNAYHGNAA--GTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (447)
Q Consensus       187 ii~~~~~yHG~~~--~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi  263 (447)
                      +|+....+|....  ... ...            |...+..|..   .+..|    .++|++.     .+++++|++++.
T Consensus        91 vvi~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~---~~~~d----~~~l~~~-----~~~~~~v~~~~p  146 (359)
T 3pj0_A           91 RVAYHPLSHLEIHEQDGLKELQ------------QITPLLLGTA---NQLLT----IDDIKSL-----REPVSSVLIELP  146 (359)
T ss_dssp             EEEECTTCHHHHSSTTHHHHHH------------CCEEEECSCT---TSCCC----HHHHHTC-----SSCCSEEEEESS
T ss_pred             EEEEeccceeeehhcchHHHhc------------CceEEecCCc---CCCcC----HHHHHhc-----cCCceEEEEEec
Confidence            5666666654322  111 111            2233333321   12234    4555544     236788888877


Q ss_pred             cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc--ccCCCcccccccCCCCCEE--EeeccccCCccccccccCH
Q 013235          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTP  339 (447)
Q Consensus       264 ~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg--r~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pigav~~~~  339 (447)
                      ++++|....+.+.+++|.++|++||++||+||+|..+.  ..|..   ...+....|++  +++|+++++.. |++++++
T Consensus       147 ~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~  222 (359)
T 3pj0_A          147 QREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKS---AEEICALFDSVYVSFYKGIGGIAG-AILAGND  222 (359)
T ss_dssp             BGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC---HHHHHTTCSEEEEESSSTTCCSSC-EEEEECH
T ss_pred             ccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC---HHHhhccCCEEEEeccccCCCcce-EEEECCH
Confidence            66653344578899999999999999999999985332  11211   11111234776  78898876533 6778899


Q ss_pred             HHHHhhcCC--cc-cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE--eecceeEEEE
Q 013235          340 EIAEVLTRR--NY-FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV--RGRGFLLGVE  414 (447)
Q Consensus       340 ~i~~~l~~~--~~-~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v--rg~Gl~~gie  414 (447)
                      ++++.+...  .+ .+++..++.+ +++.++|+...  +..++..+..+++.+.|+++    +.+.-.  +..+.++.+.
T Consensus       223 ~l~~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~  295 (359)
T 3pj0_A          223 DFVQEAKIWKRRYGGDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVY  295 (359)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEE
T ss_pred             HHHHHHHHHHHHhCCCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEE
Confidence            999877541  11 1333344444 44456665432  33445666777777777653    223221  3556677777


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +..      +.......+.+.|.++||++.+.
T Consensus       296 ~~~------~~~~~~~~l~~~l~~~GV~v~~g  321 (359)
T 3pj0_A          296 FEN------SADEIGAILTKIQDETGVGISGY  321 (359)
T ss_dssp             ESS------CHHHHHHHHHHHHHHHCEECCSC
T ss_pred             ecC------ccchhHHHHHHHHHhcCcEecCC
Confidence            632      11123567889999999999764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.81  E-value=1.9e-18  Score=174.65  Aligned_cols=300  Identities=12%  Similarity=0.039  Sum_probs=170.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHh-ccc--cc-cccc-chH----HHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQH--ST-VLYL-NHA----IADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~-~~~--~~-~~~~-~~~----~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      ..|++.++..     +.||+|.+|+.+++.. ..+  .. ..|. ...    ...+++++++.++.+.+++ +++||++|
T Consensus        26 ~~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a   99 (417)
T 3n0l_A           26 EGLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQA   99 (417)
T ss_dssp             HSEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHH
T ss_pred             cCeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHH
Confidence            3466655443     4589999999988843 211  11 1111 122    2234557788776544444 56888999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      ++.+++.+  ..+++.|++..++|++..........        ...++..++.+..  ..+..|    .++|++.+...
T Consensus       100 ~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~--~~~~~d----~~~l~~~i~~~  163 (417)
T 3n0l_A          100 NQGVYAAL--INPGDKILGMDLSHGGHLTHGAKVSS--------SGKMYESCFYGVE--LDGRID----YEKVREIAKKE  163 (417)
T ss_dssp             HHHHHHHH--SCTTCEEEEECC------------------------CCSEEEEECCC--TTSSCC----HHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCCCEEEecccccccccchhhhhhh--------hcceeeeEeccCC--CCCCcC----HHHHHHHHHhc
Confidence            99999876  33668999999999865331111000        0012222222211  123244    67777777632


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee--cccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                         ++++|++.+.  ..|.+.+    +++|.++|++||+++|+||+|+ |+...| ....  ... ..|++++|  |++ 
T Consensus       164 ---~~~~v~~~~~--~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~di~~~s~sK~l-  229 (417)
T 3n0l_A          164 ---KPKLIVCGAS--AYARVID----FAKFREIADEIGAYLFADIAHIAGLVVAG-EHPS--PFP-YAHVVSSTTHKTL-  229 (417)
T ss_dssp             ---CCSEEEECCS--SCCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCC--CTT-TCSEEEEESSTTT-
T ss_pred             ---CCeEEEECCc--ccCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcc-cCCC--ccc-cceEEEeeCcccc-
Confidence               3456665432  2366554    9999999999999999999974 332233 1110  011 35898877  999 


Q ss_pred             CCccccccccC-HHHHHhhcCCcc-cccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235          328 NGIPLGAVVTT-PEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (447)
Q Consensus       328 ~G~pigav~~~-~~i~~~l~~~~~-~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  402 (447)
                      +|.+.|+++++ +++++.+..... ..+.+.++..+++..++++.+.+   +++.+++.++.+++.+.|.+.  .+..+.
T Consensus       230 ~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~  307 (417)
T 3n0l_A          230 RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--KFKLVS  307 (417)
T ss_dssp             CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG
T ss_pred             CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--Cceecc
Confidence            56678999998 788887754322 23334456666666666765432   256667777778888877763  221111


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                       -...+.++.+.+....       .....+.+.|.++||++..
T Consensus       308 -~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~  342 (417)
T 3n0l_A          308 -DGTDNHLVLMSFLDRE-------FSGKDADLALGNAGITANK  342 (417)
T ss_dssp             -GSCSSSEEEEECTTSS-------SCHHHHHHHHHHTTEECEE
T ss_pred             -CCCCceEEEEEcccCC-------CCHHHHHHHHHHcCeEEec
Confidence             0123446666653211       0134677788899999873

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.80  E-value=1.6e-18  Score=176.59  Aligned_cols=257  Identities=16%  Similarity=0.107  Sum_probs=171.4

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..++.++...+++++|+++++..  ..++++||++|++.+++.+  ..+++.||+..++||+.......+..        
T Consensus        52 y~~~~~~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~--------  119 (421)
T 2ctz_A           52 YSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLK--------  119 (421)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHH--------
T ss_pred             ccCCCChHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHH--------
Confidence            34556788899999999998643  4577888999999999865  34678899999999987654421110        


Q ss_pred             cCCCeEeecC-CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235          215 VQTGVHHALN-PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (447)
Q Consensus       215 ~~~g~~~~~~-p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~  293 (447)
                       ..|+..... +.       +|    .+++++.+.    +++++|++|++++++|.+.+    +++|.++|++||+++|+
T Consensus       120 -~~g~~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~liv  179 (421)
T 2ctz_A          120 -RLGIEVRFTSRE-------ER----PEEFLALTD----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIV  179 (421)
T ss_dssp             -HTTCEEEECCTT-------CC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEE
T ss_pred             -HcCCEEEEECCC-------CC----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEE
Confidence             013333322 21       13    567777764    27889999999999999886    99999999999999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEE--EeeccccC-CccccccccC---HHH----HHhhcCC---cc----------
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTT---PEI----AEVLTRR---NY----------  350 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pigav~~~---~~i----~~~l~~~---~~----------  350 (447)
                      ||+|+++|..+ ..+     +..+|++  +++|.+++ |.|+|+++..   +++    .+.+...   .+          
T Consensus       180 D~~~~~~g~~~-~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~  253 (421)
T 2ctz_A          180 DNTFGMGGYLL-RPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGE  253 (421)
T ss_dssp             ECGGGGGGTSC-CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGG
T ss_pred             ECCcccccccC-Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcch
Confidence            99997787665 332     3458998  68899996 7889887764   222    1222110   00          


Q ss_pred             -----------cc--cCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-------------
Q 013235          351 -----------FN--TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-------------  404 (447)
Q Consensus       351 -----------~~--T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-------------  404 (447)
                                 ..  ....+|+.+++++..|+.+..  ..++..++.+++.+.|.+    ++.+..+             
T Consensus       254 ~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~~~  327 (421)
T 2ctz_A          254 LAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSL--RAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHHDR  327 (421)
T ss_dssp             GHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCHHH
Confidence                       01  125689998888888875532  233334555555555544    4445444             


Q ss_pred             ------eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235          405 ------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       405 ------rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                            +|.|.|++|++..+       ...+.++.+.|...++.
T Consensus       328 ~~~~~~~~~g~ivsf~l~~~-------~~~~~~~~~~l~~~~~~  364 (421)
T 2ctz_A          328 AQKYFKGKPGAVLTFGLKGG-------YEAAKRFISRLKLISHL  364 (421)
T ss_dssp             HHHHHTTCCCSEEEEEETTH-------HHHHHHHHHTCSSSEEC
T ss_pred             HHHhccCCCceEEEEEeCCC-------HHHHHHHHHhCCcceec
Confidence                  58899999999421       12345566665444433

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.80  E-value=5.6e-19  Score=178.02  Aligned_cols=273  Identities=15%  Similarity=0.057  Sum_probs=160.8

Q ss_pred             EEEecCCcccccCCCC--CHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhCCCC------CceEEE--cCCHHH
Q 013235          101 YLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGN------LKVVFF--TNSGTE  169 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~--~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~------~~~v~~--~~sGse  169 (447)
                      .|||..|......++.  .|.+.+++.+.+...  ....|.. ....++.+.+++++...      .++|++  ++||++
T Consensus        30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~  107 (401)
T 7aat_A           30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG  107 (401)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             ceeeeeeeEECCCCCEechHHHHHHHHHhcccc--cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence            5777777652223332  246777776655431  2223332 33456666666655321      467777  999999


Q ss_pred             HHHHHHHHHHhhc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          170 ANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       170 A~e~Aik~ar~~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      |+..+++..+.+. +++.|++.+++|++........             |...+..|......++.|    .+++++.++
T Consensus       108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~  170 (401)
T 7aat_A          108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-------------GLQLQAYRYYDPKTCSLD----FTGAMEDIS  170 (401)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECEETTTTEEC----HHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-------------CCeeEeeeeeccccCccC----HHHHHHHHH
Confidence            9999998766443 4688999999998765443322             222222221111122234    455555555


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccccc-CCCCCE---EEe
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEAH-GVVPDI---VTM  322 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~~~-gv~pDi---vt~  322 (447)
                      +. ..++.++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+.  ..+....+ +..+++   .++
T Consensus       171 ~~-~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  248 (401)
T 7aat_A          171 KI-PEKSIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSY  248 (401)
T ss_dssp             TS-CTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEEC
T ss_pred             hC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecC
Confidence            43 33567777777788888764 778899999999999999999999999876541  12223221 233444   479


Q ss_pred             ecccc-CCcccccccc---CHHHH----HhhcCCcccccCCCChHHHHHHHHHHHH--H----h--hhhHHHHHHHHHHH
Q 013235          323 AKGIG-NGIPLGAVVT---TPEIA----EVLTRRNYFNTFGGNPVCTAAGHAVLKV--I----Q--KDKLQNNAHVVGSY  386 (447)
Q Consensus       323 sK~lg-~G~pigav~~---~~~i~----~~l~~~~~~~T~~~np~a~aaala~L~~--i----~--~~~l~~~~~~~g~~  386 (447)
                      ||.++ .|+++|++++   +++..    +.+.......+.+.+.++++++.+.|+.  +    .  -++..++++++.++
T Consensus       249 sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~  328 (401)
T 7aat_A          249 AKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ  328 (401)
T ss_dssp             TTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 7999999775   66633    3333211223334444444444444421  0    0  12334555566666


Q ss_pred             HHHHHHHH
Q 013235          387 LKERLTAL  394 (447)
Q Consensus       387 l~~~L~~l  394 (447)
                      |.+.|+++
T Consensus       329 l~~~L~~~  336 (401)
T 7aat_A          329 LVSNLKKE  336 (401)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            66666554

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.80  E-value=3.7e-18  Score=171.20  Aligned_cols=281  Identities=15%  Similarity=0.113  Sum_probs=177.4

Q ss_pred             CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG  196 (447)
                      .|++.+|+.++++...  ...+..+...+++++|+++++..  ..++++||++|++.+++.++ ..++++|++..++||+
T Consensus        16 ~~~~~~a~~~~l~~~~--~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~   90 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQ--WWRMGGDEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFIS   90 (388)
T ss_dssp             CHHHHHHHHHHHHTSC--CBTTTCSHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTH
T ss_pred             CHHHHHHHHHHHHcCC--eeecCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHH
Confidence            3899999999987632  12345677889999999999643  45667788999999999763 2356789999999998


Q ss_pred             CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (447)
Q Consensus       197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~  276 (447)
                      ........             |...+..|... ..+..|    .++|++.+.    .++++|+  |++ .+|.+.+    
T Consensus        91 ~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~--~~n-~tG~~~~----  141 (388)
T 1b9h_A           91 SSQAAQRL-------------GAVTVPVDVDA-ATYNLD----PEAVAAAVT----PRTKVIM--PVH-MAGLMAD----  141 (388)
T ss_dssp             HHHHHHHT-------------TCEEEEECBCT-TTCCBC----HHHHHHHCC----TTEEEEC--CBC-GGGCCCC----
T ss_pred             HHHHHHHc-------------CCEEEEEecCC-CcCCCC----HHHHHHhcC----cCceEEE--EeC-CccCcCC----
Confidence            76544322             22222222111 112234    567777664    2566666  655 4566654    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccC-ccccCCCcccccccCCCCCEEEee----ccccCCccccccccCHH-H--HHhhcC-
Q 013235          277 LPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTTPE-I--AEVLTR-  347 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~tG-fgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~~~-i--~~~l~~-  347 (447)
                      +++|.++|++||+++|+||+|+. +...| ..  +..+   +|++++|    |++++| ++|+++++++ +  ++.+.. 
T Consensus       142 l~~i~~la~~~~~~li~D~a~~~g~~~~~-~~--~~~~---~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~  214 (388)
T 1b9h_A          142 MDALAKISADTGVPLLQDAAHAHGARWQG-KR--VGEL---DSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLR  214 (388)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE--GGGS---SSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEecchhcCCccCC-ee--cccc---cceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHH
Confidence            99999999999999999999973 33333 11  2222   2565554    888765 6899998875 6  454421 


Q ss_pred             Ccc--------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee----Eeecce
Q 013235          348 RNY--------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD----VRGRGF  409 (447)
Q Consensus       348 ~~~--------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~----vrg~Gl  409 (447)
                      ..+              +.++..+++.++++.+.++.+++  ..++.+++.+++.+.|+++ ........    .+..+.
T Consensus       215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~--~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~  291 (388)
T 1b9h_A          215 HSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDE--QIAVRDERWTLLSRLLGAI-DGVVPQGGDVRADRNSHY  291 (388)
T ss_dssp             TBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTS-TTCEECCCCTTCCBCCCS
T ss_pred             HhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC-CCccccCCCcCCCccceE
Confidence            110              12233567777777676665533  5566677777777777654 11111110    123467


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeeccC
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY  447 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~~  447 (447)
                      ++.+.+...      ......++.+.|.++||.++..|
T Consensus       292 ~~~~~~~~~------~~~~~~~l~~~L~~~gI~v~~~~  323 (388)
T 1b9h_A          292 MAMFRIPGL------TEERRNALVDRLVEAGLPAFAAF  323 (388)
T ss_dssp             EEEEECTTC------CHHHHHHHHHHHHHTTCCEEECC
T ss_pred             EEEEEeCCc------CcccHHHHHHHHHHCCCCccccc
Confidence            888877311      11235678999999999997643

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.80  E-value=3.8e-18  Score=171.99  Aligned_cols=287  Identities=13%  Similarity=0.066  Sum_probs=181.8

Q ss_pred             CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG  196 (447)
                      +|++.+++.+.++.. +...  ..+...+++++|++++.  .+.+++++||++|++.+++.++ ..++++|++..++|++
T Consensus        11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~   84 (394)
T 1o69_A           11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIA   84 (394)
T ss_dssp             -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGG
T ss_pred             CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHH
Confidence            467888888887652 1111  13557899999999985  3789999999999999999763 2356789999999998


Q ss_pred             CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (447)
Q Consensus       197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~  276 (447)
                      ........             |...+..|..  ..+..|    .+++++.+... ++++++|++++   +.|..    ..
T Consensus        85 ~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~i~~~-~~~~~~v~~~~---~~G~~----~~  137 (394)
T 1o69_A           85 SVAPICYL-------------KAKPVFIDCD--ETYNID----VDLLKLAIKEC-EKKPKALILTH---LYGNA----AK  137 (394)
T ss_dssp             GTHHHHHT-------------TCEEEEECBC--TTSSBC----HHHHHHHHHHC-SSCCCEEEEEC---GGGCC----CC
T ss_pred             HHHHHHHc-------------CCEEEEEEeC--CCCCcC----HHHHHHHHhcc-cCCceEEEEEC---CCCCh----hh
Confidence            77654432             2222222211  122234    56777777642 12467888876   34433    44


Q ss_pred             HHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEe--eccccCCccccccccC-HHHHHhhcCC-ccc
Q 013235          277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTT-PEIAEVLTRR-NYF  351 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~-~~i~~~l~~~-~~~  351 (447)
                      +++|.++|+++|+++|+||+|+ |+.+.|. ..+  .++ .+|+.++  +|++++ ..+|+++++ +++++.+... .+.
T Consensus       138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~~-~~~~~s~s~~K~l~~-~~~G~~~~~~~~l~~~l~~~~~~~  212 (394)
T 1o69_A          138 MDEIVEICKENDIVLIEDAAEALGSFYKNK-ALG--TFG-EFGVYSYNGNKIITT-SGGGMLIGKNKEKIEKARFYSTQA  212 (394)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETTE-ETT--SSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTC
T ss_pred             HHHHHHHHHHcCCEEEEECcCcccceeCCc-ccc--ccc-CcEEEEEeCCccCCC-CCceEEEECCHHHHHHHHHHHHhc
Confidence            9999999999999999999998 7655552 111  111 3688888  577764 579999995 7887766431 111


Q ss_pred             -------------ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe--ecce-eEEEEE
Q 013235          352 -------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGF-LLGVEF  415 (447)
Q Consensus       352 -------------~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--g~Gl-~~giel  415 (447)
                                   ..++.+++.++++++.++.+++  ..++.+++.+++++.|.++   ........  ..+. ++.+.+
T Consensus       213 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~i~~  287 (394)
T 1o69_A          213 RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY---FSFLDELENSRSNRWLSTALI  287 (394)
T ss_dssp             CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT---EECCCCCTTEECCCSSEEEEE
T ss_pred             cccCccccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc---ccccCCCCCCcceeEEEEEEe
Confidence                         1122567888888777766543  6678888888888888775   21111110  1122 355665


Q ss_pred             eeCC-----------CCCCC--CHHHHHHHHHHHHhCCceeecc
Q 013235          416 VTDR-----------QLKTP--AKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       416 ~~~~-----------~~~~p--~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      ..+.           ....+  ......++.+.|.++||.+++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~  331 (394)
T 1o69_A          288 NFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL  331 (394)
T ss_dssp             SCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred             cchhhccccccccccccccccccccCHHHHHHHHHHcCCccccc
Confidence            3210           00000  0123567889999999998764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.79  E-value=8e-18  Score=174.08  Aligned_cols=285  Identities=15%  Similarity=0.128  Sum_probs=181.9

Q ss_pred             CCCCCHHHHHHHHHHHHhccccc----ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-------
Q 013235          113 CGHCHPYVVDSIVNQIKRIQHST----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-------  181 (447)
Q Consensus       113 lGh~~p~v~~A~~~~l~~~~~~~----~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~-------  181 (447)
                      .+|.+|++++++.+++..+....    .........+++++|++.++.+ ..+++++||++|+..|+++++.+       
T Consensus        75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~-~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~  153 (474)
T 1wyu_B           75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMD-AITLEPAAGAHGELTGILIIRAYHEDRGEG  153 (474)
T ss_dssp             CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC-ceeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence            35888999998887622211000    0011245678888888887543 24568899999999999988754       


Q ss_pred             cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc
Q 013235          182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE  261 (447)
Q Consensus       182 t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E  261 (447)
                      +++++||+.+ .+|+....+....+.          .+..++...    .+..|    +++|++.+.    +++++|+++
T Consensus       154 ~~r~~Vlv~~-~~h~~~~~~~~~~G~----------~vv~v~~~~----~~~~d----~~~L~~~i~----~~t~~v~~~  210 (474)
T 1wyu_B          154 RTRRVVLVPD-SAHGSNPATASMAGY----------QVREIPSGP----EGEVD----LEALKRELG----PHVAALMLT  210 (474)
T ss_dssp             TTCCEEEEET-TSCTHHHHHHHHTTC----------EEEEECBCT----TSSBC----HHHHHHHCS----TTEEEEEEC
T ss_pred             cCCCEEEEeC-CcChhhHHHHHHCCC----------EEEEecCCC----CCCcC----HHHHHHhhC----CCceEEEEE
Confidence            2234777776 566766655443321          123333211    12224    677777764    267888888


Q ss_pred             cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccC-----Cccccc
Q 013235          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-----GIPLGA  334 (447)
Q Consensus       262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-----G~piga  334 (447)
                      .. +..|.+.   +.+++|.++|++||+++|+||+|..+ ..| .. ....++  +|++++  +|.+++     |+++|+
T Consensus       211 ~p-n~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g-~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~  281 (474)
T 1wyu_B          211 NP-NTLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMG-WA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGP  281 (474)
T ss_dssp             SS-CTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTT-TC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCC
T ss_pred             CC-CCCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hcc-CC-CcccCC--CcEEEEeCccccccCCCCCCCCeEE
Confidence            74 4577762   34999999999999999999999533 233 11 112233  799987  798862     469999


Q ss_pred             cccCHHHHHhhcCCc-------------------ccccCCCChHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Q 013235          335 VVTTPEIAEVLTRRN-------------------YFNTFGGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLT  392 (447)
Q Consensus       335 v~~~~~i~~~l~~~~-------------------~~~T~~~np~a~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~  392 (447)
                      +++++++++.+....                   ...++.+|+++++++.+.|+.+..+.+   .++..++.+++.++|+
T Consensus       282 ~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~  361 (474)
T 1wyu_B          282 VGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLK  361 (474)
T ss_dssp             EEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999887765210                   113455789999999998876654444   6777888888888888


Q ss_pred             HHHHhcCCeeeEeeccee--EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          393 ALKDKYGIIGDVRGRGFL--LGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       393 ~l~~~~~~i~~vrg~Gl~--~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ++  .+..+.   +.+.+  +.+.+ ..     .  ....++.+.|+++||++
T Consensus       362 ~~--g~~~~~---~~~~~~~~~~~~-~~-----~--~~~~~l~~~L~~~Gi~~  401 (474)
T 1wyu_B          362 EK--GYRVPY---DGPSMHEFVAQP-PE-----G--FRALDLAKGLLELGFHP  401 (474)
T ss_dssp             HT--TCBCSS---CSSCCSCEEEBC-ST-----T--CCHHHHHHHHHHTTCCC
T ss_pred             hc--CcEecC---CCCcceEEEEEc-CC-----C--CCHHHHHHHHHHCCccc
Confidence            75  333211   11222  23333 11     0  12467889999999976

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.79  E-value=1.2e-17  Score=167.70  Aligned_cols=276  Identities=14%  Similarity=0.123  Sum_probs=179.2

Q ss_pred             CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH-----hhcCCCeEEEEc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-----LYTGCNDIISLR  191 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar-----~~t~~~~ii~~~  191 (447)
                      +|++.+|+.++++...+    ++.+...+++++|+++++.  +.++|++||++|++.+++.++     ...++++|++..
T Consensus        14 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~   87 (390)
T 3b8x_A           14 DDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPA   87 (390)
T ss_dssp             CHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEES
T ss_pred             CHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECC
Confidence            68999999999877432    3567888999999999864  468899999999999999773     134567899999


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      .+||+........ +.          .+..++..  .. .+..|    .++|++.+.   + ++++|++...   .|.. 
T Consensus        88 ~~~~~~~~~~~~~-g~----------~~~~~~~~--~~-~~~~d----~~~l~~~i~---~-~~~~v~~~~~---~g~~-  141 (390)
T 3b8x_A           88 VSWSTTYYPLQQY-GL----------RVKFVDID--IN-TLNID----IESLKEAVT---D-STKAILTVNL---LGNP-  141 (390)
T ss_dssp             SSCHHHHHHHHHT-TC----------EEEEECBC--TT-TCSBC----HHHHHHHCC---T-TEEEEEEECG---GGCC-
T ss_pred             CCcHHHHHHHHHc-CC----------EEEEEecC--cc-ccCcC----HHHHHHHhC---c-CCeEEEEECC---ccCh-
Confidence            9999877654322 11          12222211  10 12234    567777664   2 5667776432   2333 


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEeeccccCCc---cccccccCH-HHHHhhc
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI---PLGAVVTTP-EIAEVLT  346 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~---pigav~~~~-~i~~~l~  346 (447)
                         ..+++|.++|++||+++|+||+|+ |...      ..+.+|..+|+.+++|..+.++   ..|++++++ ++.+.+.
T Consensus       142 ---~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~  212 (390)
T 3b8x_A          142 ---NNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILL  212 (390)
T ss_dssp             ---CCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHH
Confidence               349999999999999999999997 3222      2245678899999987655322   236777775 6654332


Q ss_pred             C---Cc----------------------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235          347 R---RN----------------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       347 ~---~~----------------------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      .   ..                            .+.++..+++.++++++.|+.++  +..++.+++.+++.+.|+++ 
T Consensus       213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~-  289 (390)
T 3b8x_A          213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH-  289 (390)
T ss_dssp             HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC-
Confidence            1   11                            01233478999999999887764  46777788888888877653 


Q ss_pred             HhcCCeeeEee---cc--eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          396 DKYGIIGDVRG---RG--FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       396 ~~~~~i~~vrg---~G--l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                         +.+ .+.+   ..  .++.+.+..+..      ....++.+.|.++||.++..
T Consensus       290 ---~~~-~~~~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~L~~~gI~v~~~  335 (390)
T 3b8x_A          290 ---PYL-DVQQETGESSWFGFSFIIKKDSG------VIRKQLVENLNSAGIECRPI  335 (390)
T ss_dssp             ---SSE-EECCCCSBCCCCEEEEEECTTSC------CCHHHHHHHHHHTTBCCBCS
T ss_pred             ---CCc-ccCCCCCCcccEEEEEEecCcCc------ccHHHHHHHHHHCCCCeeee
Confidence               212 1111   22  234455531100      01457888999999998763

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.1e-18  Score=179.15  Aligned_cols=292  Identities=13%  Similarity=0.073  Sum_probs=178.8

Q ss_pred             CCCHHHHHHHHHHHHhccccccc----cc--chHHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhhc----
Q 013235          115 HCHPYVVDSIVNQIKRIQHSTVL----YL--NHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT----  182 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~~~----~~--~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~t----  182 (447)
                      |+++.+.+++.+++....+.+..    ++  .....++++++++.++.+  .+.+++++||++|+..+++.++.+.    
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~  154 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR  154 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence            45689999999998875432221    11  233456777788887654  5679999999999999999987642    


Q ss_pred             C--CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235          183 G--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (447)
Q Consensus       183 ~--~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~  260 (447)
                      |  ++.|++..++|.+ ...+....+.          .+..++...   ..+..|    .++|++.+.    +++++|++
T Consensus       155 g~~~~~Vi~~~~~h~~-~~~~~~~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~----~~~~~v~~  212 (497)
T 3mc6_A          155 GITEPEIIAPVTAHAG-FDKAAYYFGM----------KLRHVELDP---TTYQVD----LGKVKKFIN----KNTVLLVG  212 (497)
T ss_dssp             CCSSCEEEEETTSCHH-HHHHHHHSCC----------EEEEECBCT---TTCSBC----TTTTGGGCC----SSEEEEEE
T ss_pred             CCCCceEEEeCCccHH-HHHHHHHcCC----------eEEEEecCc---ccCcCC----HHHHHHHHh----hCCEEEEE
Confidence            2  3567777766654 3333332221          233333221   011123    345655553    26789999


Q ss_pred             ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcccc-----CC-Cc--ccccccCCCCCEEEee--ccccCCc
Q 013235          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-----GS-HF--WGFEAHGVVPDIVTMA--KGIGNGI  330 (447)
Q Consensus       261 Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~-----G~-~~--~~~~~~gv~pDivt~s--K~lg~G~  330 (447)
                      +..++.+|.+.+    +++|.++|++||+++|+||+|+|+.+.     |. ..  +.+...|+  |+++++  |.+.+|.
T Consensus       213 ~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~  286 (497)
T 3mc6_A          213 SAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK  286 (497)
T ss_dssp             ETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS
T ss_pred             ECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC
Confidence            998888998876    889999999999999999999876543     10 11  33334444  777655  8887888


Q ss_pred             cccccccCHHHHHhhcCCc----cc-----ccCCCC--hHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHH
Q 013235          331 PLGAVVTTPEIAEVLTRRN----YF-----NTFGGN--PVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       331 pigav~~~~~i~~~l~~~~----~~-----~T~~~n--p~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      ++|+++++++.+.......    ..     .++.+.  ....++..++++.+.++   ++.++..++.+++++.|++...
T Consensus       287 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~  366 (497)
T 3mc6_A          287 GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIP  366 (497)
T ss_dssp             SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999998877665442110    01     111111  22233444555555444   4556677778888887777311


Q ss_pred             hcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       397 ~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+..+.  ...+.++.+..  ..       ....++.+.|.++||++..
T Consensus       367 g~~~~~--~~~~~~v~~~~--~~-------~~~~~l~~~L~~~Gi~v~~  404 (497)
T 3mc6_A          367 DLDIMG--NPRYSVISFSS--KT-------LNIHELSDRLSKKGWHFNA  404 (497)
T ss_dssp             TCEECS--CCCSSEEEEEC--TT-------TTHHHHHHHHHTTTCBCEE
T ss_pred             CEEEec--CCCeeEEEEeC--CC-------CCHHHHHHHHHhCCEEEec
Confidence            222111  23445554442  11       1246789999999998763

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.79  E-value=5.6e-18  Score=169.03  Aligned_cols=284  Identities=11%  Similarity=0.077  Sum_probs=179.8

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC----CceEEEcCCHHHHHHHHHHHHH-hhcCCCeEEEE
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN----LKVVFFTNSGTEANELAIMMAR-LYTGCNDIISL  190 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~----~~~v~~~~sGseA~e~Aik~ar-~~t~~~~ii~~  190 (447)
                      .+|+|.+|+.+++..  +.... ......++.+++++.+...    .++++|++||++|++.+++.+. ...++++|++.
T Consensus        16 ~~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~   92 (385)
T 2bkw_A           16 LSGAVQKALDVPSLG--HTSPE-FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV   92 (385)
T ss_dssp             CCHHHHHTTSCCCCC--TTSHH-HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred             chHHHHHHHhccccc--cCCHH-HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence            467888777654332  11110 1224567778888877542    3689999999999999998763 11355788788


Q ss_pred             c-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235          191 R-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (447)
Q Consensus       191 ~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~  269 (447)
                      + +.||..........+          ..+..++.+ ..  .+..|    .++|++.+..   +++++|+++++++++|.
T Consensus        93 ~~~~~~~~~~~~~~~~g----------~~~~~v~~~-~~--~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~  152 (385)
T 2bkw_A           93 STGTFSDRFADCLRSYG----------AQVDVVRPL-KI--GESVP----LELITEKLSQ---NSYGAVTVTHVDTSTAV  152 (385)
T ss_dssp             CSSHHHHHHHHHHHHTT----------CEEEEECCS-ST--TSCCC----HHHHHHHHHH---SCCSEEEEESEETTTTE
T ss_pred             cCCcchHHHHHHHHHcC----------CceEEEecC-CC--CCCCC----HHHHHHHHhc---CCCCEEEEEccCCCcCe
Confidence            4 456654222221111          012233321 11  12234    5677777764   25678889999999999


Q ss_pred             eeCCCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHH-h
Q 013235          270 IELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAE-V  344 (447)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~-~  344 (447)
                      +.+    +++|.++|++|  |+++|+||+|+ +|..   .+..+.+  .+|++++  +|.++++..+|++++++++++ .
T Consensus       153 ~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~  222 (385)
T 2bkw_A          153 LSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYA  222 (385)
T ss_dssp             ECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHH
T ss_pred             EcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc---ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHH
Confidence            886    99999999999  99999999996 4322   1222322  4688865  699886555699999998876 4


Q ss_pred             hcC------------------C--cc----cc-cCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH-HHHH
Q 013235          345 LTR------------------R--NY----FN-TFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL-TALK  395 (447)
Q Consensus       345 l~~------------------~--~~----~~-T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L-~~l~  395 (447)
                      +..                  .  .+    .. .+..|+.+++++.++|+.+++.   ++.++.+++.+++.+.| +++ 
T Consensus       223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-  301 (385)
T 2bkw_A          223 LNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-  301 (385)
T ss_dssp             TCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             HhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            420                  0  00    01 1356788888888889887643   34677777778887777 554 


Q ss_pred             HhcCCeeeEe---ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          396 DKYGIIGDVR---GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       396 ~~~~~i~~vr---g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                       .+..+..-.   ..+.++.+.+.        .   ..++.+.|.++||.+.+
T Consensus       302 -g~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~  342 (385)
T 2bkw_A          302 -QLTSVSRYPSNMSAHGLTAVYVA--------D---PPDVIAFLKSHGVVIAG  342 (385)
T ss_dssp             -CCEESSCSSSTTBCSSCEEEECS--------C---HHHHHHHHHHTTEECBC
T ss_pred             -CceecccCcccccCCceEEEecC--------C---HHHHHHHHHHCCeEEeC
Confidence             221111000   24778888762        1   35688889999999875

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.79  E-value=2.9e-18  Score=170.70  Aligned_cols=277  Identities=16%  Similarity=0.069  Sum_probs=175.1

Q ss_pred             CCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHh-hcCCCeEEEEcCC
Q 013235          115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL-YTGCNDIISLRNA  193 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~-~t~~~~ii~~~~~  193 (447)
                      ..+|++.+|+.++++....    ++.+...+++++|+++++.  +++++++||++|++.+++.++. ..++++|++..++
T Consensus        10 ~~~~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~   83 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS   83 (375)
T ss_dssp             CCCHHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred             CCCHHHHHHHHHHHHcCcc----cCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCc
Confidence            3579999999999876421    2456788999999999854  4899999999999999997742 2355789999999


Q ss_pred             cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      ||+........             |...+..|....+  ..|    .++|++.+.   + ++.+|++...   +|.+.+ 
T Consensus        84 ~~~~~~~~~~~-------------g~~~~~~~~~~~~--~~d----~~~l~~~i~---~-~~~~v~~~~~---tG~~~~-  136 (375)
T 2fnu_A           84 FVATANMLLES-------------GYTPVFAGIKNDG--NID----ELALEKLIN---E-RTKAIVSVDY---AGKSVE-  136 (375)
T ss_dssp             CTHHHHHHHHT-------------TCEEEECCBCTTS--SBC----GGGSGGGCC---T-TEEEEEEECG---GGCCCC-
T ss_pred             cHhHHHHHHHC-------------CCEEEEeccCCCC--CCC----HHHHHhhcC---c-CceEEEEeCC---cCCccC-
Confidence            99876544322             2222222211111  123    344554443   2 4566544433   677665 


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eee--ccccCCcccccccc-C-HHHHHhhcC
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMA--KGIGNGIPLGAVVT-T-PEIAEVLTR  347 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~s--K~lg~G~pigav~~-~-~~i~~~l~~  347 (447)
                         +++|.++|++||+++|+||+|+. |...    .....+..+|++  +++  |.++.|  +|++++ + +++++.+..
T Consensus       137 ---l~~i~~l~~~~~~~li~D~a~~~-~~~~----~~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~  206 (375)
T 2fnu_A          137 ---VESVQKLCKKHSLSFLSDSSHAL-GSEY----QNKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKL  206 (375)
T ss_dssp             ---HHHHHHHHHHHTCEEEEECTTCT-TCEE----TTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCEEEEECcccc-CCeE----CCeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHH
Confidence               89999999999999999999973 3221    112233334665  677  999664  688777 3 777665543


Q ss_pred             Cc----------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee---eEeecc
Q 013235          348 RN----------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG---DVRGRG  408 (447)
Q Consensus       348 ~~----------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---~vrg~G  408 (447)
                      ..                ...+++.+++.+++++..++.+  +++.++.+++.+++.+.|+++. .+....   ..++.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~  283 (375)
T 2fnu_A          207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNP-YFTPLHPLLKDKSSN  283 (375)
T ss_dssp             HTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCS-SEEESGGGCSSCCCC
T ss_pred             HHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CccccCCCCCCCcce
Confidence            11                1123456788887777666544  3466777777888877776641 111111   012234


Q ss_pred             eeEEEEEeeCCCCCCCCHH-HHHHHHHHHHhCCceee
Q 013235          409 FLLGVEFVTDRQLKTPAKA-ETLYIMDKMKGICALFF  444 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~-~~~~~~~~l~~~Gvlv~  444 (447)
                      .++.+.+....       . ...++.+.|.++||.++
T Consensus       284 ~~~~~~~~~~~-------~~~~~~l~~~L~~~gi~v~  313 (375)
T 2fnu_A          284 HLYPILMHQKF-------FTCKKLILESLHKRGILAQ  313 (375)
T ss_dssp             SCEEEEECGGG-------GGGHHHHHHHHHHTTEECB
T ss_pred             EEEEEEeCccc-------cchHHHHHHHHHHCCCCcc
Confidence            55567763210       0 24678889999999987

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.77  E-value=9.9e-18  Score=174.55  Aligned_cols=276  Identities=16%  Similarity=0.134  Sum_probs=169.0

Q ss_pred             CCHHHHHHHHHHHHhccc-cccccc-chHHHHHHHHHHHhC------CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235          116 CHPYVVDSIVNQIKRIQH-STVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDI  187 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~-~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~i  187 (447)
                      .++++++++.+++..... ....|. .....++.+.+++++      +.+.+.|++++||++|+..+++.... ..++.|
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~V  185 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR-NEKDGI  185 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-STTEEE
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCEE
Confidence            467788888888876421 222333 222344444444443      24567899999999999999986531 256789


Q ss_pred             EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccC
Q 013235          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQG  265 (447)
Q Consensus       188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~  265 (447)
                      ++.+++|++........             |...+.+|......|+.|    +++|++.+...  ...++.+|++...++
T Consensus       186 lv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~ivl~~p~N  248 (500)
T 3tcm_A          186 LVPIPQYPLYSASIALH-------------GGALVPYYLNESTGWGLE----TSDVKKQLEDARSRGINVRALVVINPGN  248 (500)
T ss_dssp             EEEESCCTHHHHHHHHT-------------TCEEEEEECBTTTTSBCC----HHHHHHHHHHHHHTTCEEEEEEEESSCT
T ss_pred             EEeCCCcHhHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence            99999998766544332             222233322222335556    55666666531  111454544444466


Q ss_pred             CCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Ccccc----cccCC-C--CC-EE--Eeeccc-c-CCccc
Q 013235          266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGF----EAHGV-V--PD-IV--TMAKGI-G-NGIPL  332 (447)
Q Consensus       266 ~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~----~~~gv-~--pD-iv--t~sK~l-g-~G~pi  332 (447)
                      ++|.+. +.+.+++|.++|++||+++|+||+|.++...+. .+..+    ..++. .  ++ ++  +|||++ | .|+++
T Consensus       249 PtG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~  327 (500)
T 3tcm_A          249 PTGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG  327 (500)
T ss_dssp             TTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred             CCcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence            777665 677899999999999999999999998765431 22222    12222 1  22 33  789999 5 59999


Q ss_pred             ccccc---CHHHHHhhcCCcccccCCCChHHHHHHHHHHH-----------HHh-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 013235          333 GAVVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQ-KDKLQNNAHVVGSYLKERLTALKDK  397 (447)
Q Consensus       333 gav~~---~~~i~~~l~~~~~~~T~~~np~a~aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~~l~~~  397 (447)
                      ||+++   ++++++.+.... ..+++.|+.+++++..+|+           ..+ .+.+.++++++.+++.+.|+++   
T Consensus       328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---  403 (500)
T 3tcm_A          328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL---  403 (500)
T ss_dssp             EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred             EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            99998   888888776422 2456678888888777774           221 1344556666666666666553   


Q ss_pred             cCCeeeEeec-ceeEEEEE
Q 013235          398 YGIIGDVRGR-GFLLGVEF  415 (447)
Q Consensus       398 ~~~i~~vrg~-Gl~~giel  415 (447)
                       +.+..+... |+++.+.+
T Consensus       404 -~g~~~~~~~g~~~~~~~~  421 (500)
T 3tcm_A          404 -EGITCNEAEGAMYVFPQI  421 (500)
T ss_dssp             -TTEECCCCCBTTEECCEE
T ss_pred             -CCcEEecCCeEEEEeeee
Confidence             333333333 45555444

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.77  E-value=6.5e-18  Score=166.59  Aligned_cols=298  Identities=16%  Similarity=0.147  Sum_probs=182.1

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a  178 (447)
                      .++|||.++....    .+|++.+++.+....   ....++++...+|+++|+++++.  +.+++++||++|+..+++..
T Consensus         3 ~~~i~~~~~~~~~----p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~~~~~~   73 (347)
T 1jg8_A            3 HMMIDLRSDTVTK----PTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAH   73 (347)
T ss_dssp             --CEECSCGGGCC----CCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH
T ss_pred             ceEEEeccccCCC----CCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCC--ceEEEecCcHHHHHHHHHHh
Confidence            3578998877632    668888887654211   11223567788999999999853  56789999999999998764


Q ss_pred             HhhcCCCeEEEEcCCcccCch-h-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCC
Q 013235          179 RLYTGCNDIISLRNAYHGNAA-G-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGH  254 (447)
Q Consensus       179 r~~t~~~~ii~~~~~yHG~~~-~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~  254 (447)
                      .  ..+++|++.+++|..... . .....            |...+...+.   .+..|    .+++++.+....  ..+
T Consensus        74 ~--~~gd~Vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~---~~~~d----~~~l~~~i~~~~~~~~~  132 (347)
T 1jg8_A           74 T--QRGDEVILEADSHIFWYEVGAMAVLS------------GVMPHPVPGK---NGAMD----PDDVRKAIRPRNIHFPR  132 (347)
T ss_dssp             C--CTTCEEEEETTCHHHHSSTTHHHHHT------------CCEEEEECEE---TTEEC----HHHHHHHSCCSCTTSCC
T ss_pred             c--CCCCEEEEcCcchhhhccccchhhcc------------CeEEEEecCC---CCccC----HHHHHHHhccccccccC
Confidence            3  256788888887643221 1 11111            2222221110   01113    567777765311  125


Q ss_pred             eEEEEEccccCCC-ceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc---ccCCCcccccccCCCCCE--EEeeccccC
Q 013235          255 VAGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA---RTGSHFWGFEAHGVVPDI--VTMAKGIGN  328 (447)
Q Consensus       255 ~aavi~Epi~~~g-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg---r~G~~~~~~~~~gv~pDi--vt~sK~lg~  328 (447)
                      +++|++++.++++ |.+. |.+.+++|.++|++||+++|+||+|. ++   ..|..   ........|.  ++++|.+++
T Consensus       133 ~~~v~~~~~~npt~G~~~-~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~---~~~~~~~~d~~~~s~sK~l~~  207 (347)
T 1jg8_A          133 TSLIAIENTHNRSGGRVV-PLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP---VKEYAGYADSVMFCLSKGLCA  207 (347)
T ss_dssp             EEEEEEESSBTTTTSBCC-CHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC---HHHHHHTCSEEEEESSSTTCC
T ss_pred             ceEEEEeccccccCCccC-cHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC---hHHhcccccEEEEecccccCC
Confidence            7889999888887 7654 67789999999999999999999874 32   12211   1111112344  368999975


Q ss_pred             Cccccc-cccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          329 GIPLGA-VVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       329 G~piga-v~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                        |+|+ +++++++++.+...  .+.+++..+++.++++..+|+...+ .+ ++..+..+++.+.|+++  .+... ..+
T Consensus       208 --~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~l~~~L~~~--~~~~~-~~~  280 (347)
T 1jg8_A          208 --PVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVD-RL-KEDHENARFLALKLKEI--GYSVN-PED  280 (347)
T ss_dssp             --SSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSST-TH-HHHHHHHHHHHHHHHHH--TCBCC-GGG
T ss_pred             --CceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHhc--Cceec-cCC
Confidence              5785 56788887765431  1223344456777777778875322 23 33445667888888765  23211 113


Q ss_pred             ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..|.++++++....       ....++.+.|+++||++.+
T Consensus       281 ~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~  313 (347)
T 1jg8_A          281 VKTNMVILRTDNLK-------VNAHGFIEALRNSGVLANA  313 (347)
T ss_dssp             CCSSEEEEECTTSS-------SCHHHHHHHHHHHTEECEE
T ss_pred             CcceEEEEEccccc-------CCHHHHHHHHHHCCCEEec
Confidence            45677777763100       0145788899999998863

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.77  E-value=1.8e-17  Score=169.37  Aligned_cols=291  Identities=11%  Similarity=0.025  Sum_probs=185.8

Q ss_pred             CCHHHHHHHHHHHHhc---cc-ccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235          116 CHPYVVDSIVNQIKRI---QH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII  188 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~---~~-~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii  188 (447)
                      ++++|.+|+.++....   .. ....|......+++++|++.++..  ...+   ++||++|++.+++...  ..++.|+
T Consensus        36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al~--~~Gd~Vl  111 (431)
T 3ht4_A           36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGIL--RPGDELL  111 (431)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTTC--CTTCEEE
T ss_pred             HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHhC--CCCCEEE
Confidence            5678888887753221   11 122456778889999999998543  2333   5699999999997442  3567888


Q ss_pred             EEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc-ccCCC
Q 013235          189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVG  267 (447)
Q Consensus       189 ~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep-i~~~g  267 (447)
                      +.++..|+.+...+.+++.  ++......|+.....|...  .+..|    .++|++.+.    .++++|++|+ .++.+
T Consensus       112 ~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~--~~~~d----~e~l~~~l~----~~tk~V~i~~sp~np~  179 (431)
T 3ht4_A          112 YITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTE--GGLVD----FEAVAAAIH----SNTKMIGIQRSKGYAT  179 (431)
T ss_dssp             ECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCT--TSSBC----HHHHHHHCC----TTEEEEEEECSCTTSS
T ss_pred             EeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCC--CCCcC----HHHHHhhcC----CCCeEEEEECCCCCCC
Confidence            8885666777666655543  2211222344444333221  12234    567777664    3688999995 44444


Q ss_pred             ceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC--ccccccccCHHH
Q 013235          268 GIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVTTPEI  341 (447)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pigav~~~~~i  341 (447)
                      |.. .+...+++|.++|++  +|+++|+||+|..+...+ ...   .++  .|++  +++|.+++|  .+.|++++++++
T Consensus       180 ~~~-~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~-~~~---~~g--~Di~~~S~sK~lgg~~~~~GG~v~~~~~l  252 (431)
T 3ht4_A          180 RPS-FTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ-EPC---HVG--ADLMAGSLIKNPGGGIVKTGGYIVGKEQY  252 (431)
T ss_dssp             SCC-CCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC-CGG---GTT--CSEEEEETTSGGGTTTCSSCEEEEECHHH
T ss_pred             CCc-CCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC-Ccc---ccC--CeEEEcCccccCCCCCCCceEEEEecHHH
Confidence            443 356669999999999  999999999998876544 221   224  4666  588999975  567889999999


Q ss_pred             HHhhcCC----cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCeeeEeecceeEEEEEe
Q 013235          342 AEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YGIIGDVRGRGFLLGVEFV  416 (447)
Q Consensus       342 ~~~l~~~----~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~~~i~~vrg~Gl~~giel~  416 (447)
                      ++.+...    ....+.+.++..+.+++..|+.+  +...++..+...++.+.|+++--+ ++. .+.++.+++++|++.
T Consensus       253 i~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~  329 (431)
T 3ht4_A          253 VEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD  329 (431)
T ss_dssp             HHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC
T ss_pred             HHHHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC
Confidence            8877541    12223333233244455556544  346677778888888888876321 111 234677889999984


Q ss_pred             eCCCCCCCCHHHHHHHHHHHHhCC
Q 013235          417 TDRQLKTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       417 ~~~~~~~p~~~~~~~~~~~l~~~G  440 (447)
                              +.+.+.++++.|.+..
T Consensus       330 --------~~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          330 --------DKDRMIAFCQAIQYAS  345 (431)
T ss_dssp             --------CHHHHHHHHHHHHHTS
T ss_pred             --------CHHHHHHHHHHHHhcC
Confidence                    2345678888888764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.77  E-value=7.1e-18  Score=169.11  Aligned_cols=294  Identities=12%  Similarity=0.018  Sum_probs=173.4

Q ss_pred             CC-eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHH
Q 013235           98 GR-RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAI  175 (447)
Q Consensus        98 G~-~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Ai  175 (447)
                      |. .++|+..+.+..   -.+|++.+|+.    .  +.   .+.....++++.+++.++. +.+.+++++||++|++.++
T Consensus        26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~--~~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~   93 (374)
T 2aeu_A           26 GRDALYDLSGLSGGF---LIDEKDKALLN----T--YI---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI   93 (374)
T ss_dssp             CGGGCEECSSCCCCC---CCCHHHHHHHT----S--TT---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             CccceeeecccCCCC---CCCHHHHHHHH----H--hc---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence            44 455876544322   24677877774    1  11   1233335667777666643 1267899999999999999


Q ss_pred             HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (447)
Q Consensus       176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (447)
                      +..    ++++|++.+++||+.......+.          ..|...+..         .|    .+++++. .    +++
T Consensus        94 ~~~----~gd~Vl~~~~~y~~~~~~~~~~~----------~~g~~~~~v---------~d----~~~l~~~-~----~~~  141 (374)
T 2aeu_A           94 LAL----KPKKVIHYLPELPGHPSIERSCK----------IVNAKYFES---------DK----VGEILNK-I----DKD  141 (374)
T ss_dssp             HHH----CCSEEEEECSSSSCCTHHHHHHH----------HTTCEEEEE---------SC----HHHHHTT-C----CTT
T ss_pred             HhC----CCCEEEEecCCCCccHHHHHHHH----------HcCcEEEEe---------CC----HHHHHhc-C----CCc
Confidence            855    56899999999998543111110          012222221         12    4566554 2    256


Q ss_pred             EE-EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCccc
Q 013235          256 AG-FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPL  332 (447)
Q Consensus       256 aa-vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pi  332 (447)
                      ++ |++++.++++|.   +...+++|.++|++||+++|+||++..+. .|. ..........+|+++  ++|.++ |+++
T Consensus       142 ~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~~-~~~~~~~~~~~di~~~S~sK~l~-g~~~  215 (374)
T 2aeu_A          142 TLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RLL-FNQPPALKLGADLVVTSTDKLME-GPRG  215 (374)
T ss_dssp             EEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HHH-TTCCCHHHHTCSEEEEETTSSSS-SCSC
T ss_pred             cEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-ccc-cccCCccccCCcEEEecCccccc-Ccce
Confidence            78 889888888884   33459999999999999999999886442 110 000001123468885  889987 4799


Q ss_pred             cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHhc----CCeeeE
Q 013235          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL----KERLTALKDKY----GIIGDV  404 (447)
Q Consensus       333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l----~~~L~~l~~~~----~~i~~v  404 (447)
                      |++++++++++.+.........+.+++.++++.++|+.+..+ ..++..+..+.+    ++.|.+.....    +.....
T Consensus       216 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~  294 (374)
T 2aeu_A          216 GLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER  294 (374)
T ss_dssp             EEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred             EEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceee
Confidence            999999999987764322223356899999999999876432 233333444444    45554433222    111234


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeecc
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFSQ  446 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~~  446 (447)
                      ++.|.++...  +....  .......+++..+ .++||++.+.
T Consensus       295 ~~~g~~~~~~--~~~~~--~~~~~~~~~~~~ll~~~gV~v~~g  333 (374)
T 2aeu_A          295 TPTGFVIKRV--YKDDT--INIKKLIEIGFNLLKNYGIITITV  333 (374)
T ss_dssp             CSSEEEEEEE--ESSHH--HHHHHHHHHHHHHHHHHCEECSTT
T ss_pred             CCceEEEEee--ccccc--ccccchHHHHHHHHHhCCEEEecC
Confidence            5666665442  11000  0000112355444 4689998753

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.75  E-value=1.8e-17  Score=167.97  Aligned_cols=252  Identities=14%  Similarity=0.042  Sum_probs=164.8

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh---hhhccCCCCcccccc
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG---TMGATAQSNWKFNVV  215 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~---~~~~t~~~~~~~~~~  215 (447)
                      .++...+|+++|+++++.  +.+++++||++|+..+++...  .+++.|++.++.|++....   ....           
T Consensus        60 ~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~~~-----------  124 (404)
T 1e5e_A           60 GNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL--KAGDHLISDECLYGCTHALFEHALTK-----------  124 (404)
T ss_dssp             CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH-----------
T ss_pred             cChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHh--CCCCEEEEeCCCchhHHHHHHHHHHH-----------
Confidence            457778999999999854  467889999999999998542  3567899999999875431   1111           


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-hCCEEEEe
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIAD  294 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-~g~llI~D  294 (447)
                       .|+..+..|.       +|    .+++++.+.    +++++|+++..++++|.+.+    +++|.++|++ +|+++|+|
T Consensus       125 -~g~~~~~v~~-------~d----~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~D  184 (404)
T 1e5e_A          125 -FGIQVDFINT-------AI----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIAD  184 (404)
T ss_dssp             -TTCEEEEECT-------TS----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEE
T ss_pred             -cCCEEEEECC-------CC----HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEE
Confidence             1333332221       12    356666654    26789999999999998875    9999999999 99999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCHHHHH-hhcCCcccc-cCCCChHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYFN-TFGGNPVCTAAGHAVL  368 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~~i~~-~l~~~~~~~-T~~~np~a~aaala~L  368 (447)
                      |+|+.+...  ..  .+ ++  .|++  +++|.+++ |.++ |++++++++++ .+....... +.+.+|++++++.++|
T Consensus       185 e~~~~~~~~--~~--~~-~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l  257 (404)
T 1e5e_A          185 NTFCSPMIT--NP--VD-FG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGL  257 (404)
T ss_dssp             CTTTCTTTC--CG--GG-GT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             CCCchhhhC--Cc--cc-cC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhH
Confidence            999876432  11  12 33  5766  58899985 7898 99999999887 776543333 4567899999888888


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHH----HhcCCee----------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHH
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALK----DKYGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD  434 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~----~~~~~i~----------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~  434 (447)
                      +.+.  ...++..+..+.+.+.|++..    .-++.+.          ..+|.|.|+.+++.+        .  ...+.+
T Consensus       258 ~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~--------~--~~~~~~  325 (404)
T 1e5e_A          258 STLN--IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS--------G--FEGAKK  325 (404)
T ss_dssp             TTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT--------H--HHHHHH
T ss_pred             hHHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC--------C--HHHHHH
Confidence            6432  122333333344444333321    0011110          134668999998731        1  123444


Q ss_pred             HHHhCCceee
Q 013235          435 KMKGICALFF  444 (447)
Q Consensus       435 ~l~~~Gvlv~  444 (447)
                      .+.+.||++.
T Consensus       326 ~l~~~~i~~~  335 (404)
T 1e5e_A          326 LLDNLKLITL  335 (404)
T ss_dssp             HHHTCSSSEE
T ss_pred             HHHhCCCcee
Confidence            5566787543

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.75  E-value=9.9e-18  Score=164.43  Aligned_cols=249  Identities=16%  Similarity=0.056  Sum_probs=162.5

Q ss_pred             HHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC
Q 013235          145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN  224 (447)
Q Consensus       145 elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~  224 (447)
                      +++++|++.++.+  ..++++||++|++.+++...  .++++|++..++||+.......+..         ..|+.....
T Consensus         2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~--~~g~~v~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~   68 (331)
T 1pff_A            2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQLR---------KFGVEVDFI   68 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHH---------HTTCEEEEE
T ss_pred             hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcchHHHHHHHHHH---------hcCCEEEEe
Confidence            5778888888653  56678889999999998652  3567899999999986544322100         012222221


Q ss_pred             CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-hCCEEEEeccccCcccc
Q 013235          225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEVQAGFART  303 (447)
Q Consensus       225 p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tGfgr~  303 (447)
                      |.       .|    .+++++.+.    +++++|+++++++++|.+.+    +++|.++|++ +|+++|+||+|+.+ ..
T Consensus        69 ~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~  128 (331)
T 1pff_A           69 DM-------AV----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-IL  128 (331)
T ss_dssp             CT-------TS----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HH
T ss_pred             CC-------CC----HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-cc
Confidence            11       12    345665553    36789999999999999886    9999999999 99999999999732 22


Q ss_pred             CCCcccccccCCCCCEE--EeeccccC-Ccc-ccccccCH-HHHHhhcCCccc-ccCCCChHHHHHHHHHHHHHhh--hh
Q 013235          304 GSHFWGFEAHGVVPDIV--TMAKGIGN-GIP-LGAVVTTP-EIAEVLTRRNYF-NTFGGNPVCTAAGHAVLKVIQK--DK  375 (447)
Q Consensus       304 G~~~~~~~~~gv~pDiv--t~sK~lg~-G~p-igav~~~~-~i~~~l~~~~~~-~T~~~np~a~aaala~L~~i~~--~~  375 (447)
                      . .  .. .++  +|++  +++|.+++ |.| +|++++++ ++++.+...... .+...|++++.++.+.++.+..  +.
T Consensus       129 ~-~--~~-~~~--~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  202 (331)
T 1pff_A          129 T-N--PL-DLG--VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKR  202 (331)
T ss_dssp             C-C--GG-GGT--CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-C--hh-hcC--CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHH
Confidence            1 1  11 234  5666  58899985 678 78999998 998888765555 5667889998888788875532  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh-cCCee----------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          376 LQNNAHVVGSYLKERLTALKDK-YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       376 l~~~~~~~g~~l~~~L~~l~~~-~~~i~----------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.+++..+.+++.+. ..+.+. ++.+.          ..++.|.++.+++. +          ...+.+.|.++||+++
T Consensus       203 ~~~~~~~~~~~l~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~  270 (331)
T 1pff_A          203 AAENAQKVAEFLHEH-KAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSL  270 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEE
T ss_pred             HHHHHHHHHHHHHcC-CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCcee
Confidence            344444444444332 010000 01111          12467889998874 1          2456777888999764

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.75  E-value=1.6e-16  Score=162.77  Aligned_cols=252  Identities=17%  Similarity=0.132  Sum_probs=166.0

Q ss_pred             cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (447)
Q Consensus       133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~  212 (447)
                      |...++.++...+++++|+++++..  ..++++||++|+..+++...  ..++.||+.++.|++.........       
T Consensus       106 ~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~-------  174 (445)
T 1qgn_A          106 FEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETIL-------  174 (445)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS--CSSCEEEEETTSCHHHHHHHHHTG-------
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHHH-------
Confidence            4445567889999999999998653  56778999999999998542  245789999998887433211000       


Q ss_pred             cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                        ...|+.....|.       +|    .+++++.+..   +.+++|++|++++++|.+.+    +++|.++|++||+++|
T Consensus       175 --~~~G~~v~~v~~-------~d----~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~li  234 (445)
T 1qgn_A          175 --PKMGITATVIDP-------AD----VGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVC  234 (445)
T ss_dssp             --GGGTCEEEEECS-------SC----HHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             --HHcCCEEEEeCC-------CC----HHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence              011332222221       13    5778887763   23489999999999999886    9999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEE--eeccccCC--ccccccccCHHHHHhhcCCcccccCCC--ChHHHHHHHH
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNG--IPLGAVVTTPEIAEVLTRRNYFNTFGG--NPVCTAAGHA  366 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G--~pigav~~~~~i~~~l~~~~~~~T~~~--np~a~aaala  366 (447)
                      +||+|+.+ ..      ....+..+|+++  ++|.++++  +++|++++++++++.+...  ..++++  +|+.+..++.
T Consensus       235 vD~a~~~~-~~------~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~--~~~~g~~~~~~~a~~~~~  305 (445)
T 1qgn_A          235 IDGTFATP-LN------QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL--HHILGGALNPNAAYLIIR  305 (445)
T ss_dssp             EECTTTCT-TT------CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH--HHHHCCCCCHHHHHHHHH
T ss_pred             EECCCccc-cc------CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH--HHHhCCCCCHHHHHHHHH
Confidence            99999632 11      122345679987  77999863  4799999999998877532  233444  6777777766


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------EeecceeEEEEEeeCCCCCCCCHHH
Q 013235          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAE  428 (447)
Q Consensus       367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~Gl~~giel~~~~~~~~p~~~~  428 (447)
                      .|+.+..  ..++..+..+++.+.|++.    +.+..                  ++|.|.|+.|++..+       ...
T Consensus       306 ~l~~l~~--r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-------~~~  372 (445)
T 1qgn_A          306 GMKTLHL--RVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLT  372 (445)
T ss_dssp             HGGGHHH--HHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-------HHH
Confidence            6654421  2233334455555555443    33322                  246789999998431       123


Q ss_pred             HHHHHHHHH
Q 013235          429 TLYIMDKMK  437 (447)
Q Consensus       429 ~~~~~~~l~  437 (447)
                      +.++.+.|.
T Consensus       373 ~~~~l~~l~  381 (445)
T 1qgn_A          373 TAKFVDALK  381 (445)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHHhCC
Confidence            556666654

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.73  E-value=2.7e-16  Score=163.68  Aligned_cols=276  Identities=12%  Similarity=0.058  Sum_probs=165.3

Q ss_pred             CCHHHHHHHHHHHHhccc-ccccc-----cchHHHHHHHHHHHhC---CCCCceEEEcCCHHHHHHHHHHHHHhhcC---
Q 013235          116 CHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKM---PGNLKVVFFTNSGTEANELAIMMARLYTG---  183 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~-~~~~~-----~~~~~~elae~L~~~~---~~~~~~v~~~~sGseA~e~Aik~ar~~t~---  183 (447)
                      .+..+.+++.+.++.... ....|     ..+...++++.+.+..   +...++|++++++++|+..++++... .+   
T Consensus       102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~-~gd~~  180 (498)
T 3ihj_A          102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS-GGGKS  180 (498)
T ss_dssp             SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC-CCGGG
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCC
Confidence            356677777777776421 11122     2345556666666553   23567899999999999999985532 11   


Q ss_pred             CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC-CeEEEEEcc
Q 013235          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG-HVAGFLSES  262 (447)
Q Consensus       184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~-~~aavi~Ep  262 (447)
                      ++.|++..++|..........             |...+.++......|+.|    +++|++.+.....+ ++.+|++..
T Consensus       181 ~d~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~k~i~l~n  243 (498)
T 3ihj_A          181 RTGVMIPIPQYPLYSAVISEL-------------DAIQVNYYLDEENCWALN----VNELRRAVQEAKDHCDPKVLCIIN  243 (498)
T ss_dssp             SEEEEEEESCCTHHHHHHHHT-------------TCEEEEEECBGGGTTBCC----HHHHHHHHHHHTTTSEEEEEEEES
T ss_pred             CCEEEEeCCCchhHHHHHHHc-------------CCEEEEeeccccccCCCC----HHHHHHHHHhhhccCCCeEEEEEC
Confidence            248999999998665443322             222233322222335556    66777777643221 355555555


Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccccccc--CC------CCCEE---Eeeccc-c-C
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH--GV------VPDIV---TMAKGI-G-N  328 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~--gv------~pDiv---t~sK~l-g-~  328 (447)
                      .++++|.+. +.+.+++|.++|++||+++|+||+|..+...+. .+..+...  +.      ...++   +|||.+ | .
T Consensus       244 p~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~  322 (498)
T 3ihj_A          244 PGNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC  322 (498)
T ss_dssp             SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS
T ss_pred             CCCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc
Confidence            566777665 677899999999999999999999988765441 22222111  01      11222   689999 4 7


Q ss_pred             Cccccccc---cCHHHHHhhcCCcccccCCCChHHHHHHHHHHH-----------HHh-hhhHHHHHHHHHHHHHHHHHH
Q 013235          329 GIPLGAVV---TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQ-KDKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       329 G~pigav~---~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~~  393 (447)
                      |+++||++   .++++++.+.... ....+.|+++++++.++++           .++ .+.+.++++++.+++.+.|++
T Consensus       323 G~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~  401 (498)
T 3ihj_A          323 GYRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ  401 (498)
T ss_dssp             SSCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998   6899988876432 2344556777766655552           111 123445555556666655554


Q ss_pred             HHHhcCCeeeEeec-ceeEEEEE
Q 013235          394 LKDKYGIIGDVRGR-GFLLGVEF  415 (447)
Q Consensus       394 l~~~~~~i~~vrg~-Gl~~giel  415 (447)
                          ++.+..+... |+++.+.+
T Consensus       402 ----~~g~~~~~p~gg~~~~~~l  420 (498)
T 3ihj_A          402 ----VPGIHCNPLQGAMYAFPRI  420 (498)
T ss_dssp             ----STTEECCCCCBSSEECCEE
T ss_pred             ----CCCcEecCCCeEEEEEEec
Confidence                3334434444 45555555

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.73  E-value=1.5e-16  Score=160.60  Aligned_cols=253  Identities=16%  Similarity=0.100  Sum_probs=161.5

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..++.++...+++++|+++++..  .+++++||+||++.+++ .  ...++.||+..+.||+..........        
T Consensus        49 ~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~~--------  115 (393)
T 1n8p_A           49 YSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVAN--------  115 (393)
T ss_dssp             BTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTST--------
T ss_pred             eecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHHH--------
Confidence            34566778889999999998653  57788899999999998 3  23457899999999874332110000        


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh----CCE
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA----GGL  290 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~----g~l  290 (447)
                       ..|+.....|.        +  .  +++++.+.    +++++|+++++++++|.+.+    +++|.++|+++    |++
T Consensus       116 -~~G~~v~~v~~--------~--d--~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~  174 (393)
T 1n8p_A          116 -AHGVETSFTND--------L--L--NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVI  174 (393)
T ss_dssp             -TTCSCCEEESS--------H--H--HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCE
T ss_pred             -HcCcEEEEeCC--------C--h--HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCE
Confidence             01221111111        1  1  45665553    26889999999999999886    99999999999    999


Q ss_pred             EEEeccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccC-HHHHHhhcCCcccccCCCChHHHHHHH
Q 013235          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~-~~i~~~l~~~~~~~T~~~np~a~aaal  365 (447)
                      +|+||+|+++.+ . ..+.   ++  +|++  +++|.+++ |+++ |+++++ +++++.+...........+|..++++.
T Consensus       175 livD~a~~~~~~-~-~~~~---~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  247 (393)
T 1n8p_A          175 LVVDNTFLSPYI-S-NPLN---FG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTH  247 (393)
T ss_dssp             EEEECTTTHHHH-C-CGGG---GT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             EEEeCCcccccc-C-CHHH---cC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            999999987654 2 2321   23  6887  58899995 7889 888884 788887754322122334688887777


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC-eeeE------------------ee-c-ceeEEEEEeeCCCCCCC
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDV------------------RG-R-GFLLGVEFVTDRQLKTP  424 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~v------------------rg-~-Gl~~giel~~~~~~~~p  424 (447)
                      ..++.+..  ..++..+..+.+.+.|++.    +. +..+                  +| . |.+++|++...      
T Consensus       248 ~~l~~~~~--~~~~~~~~~~~l~~~L~~~----~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~------  315 (393)
T 1n8p_A          248 RGLKTLHL--RVRQAALSANKIAEFLAAD----KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG------  315 (393)
T ss_dssp             HHHTTHHH--HHHHHHHHHHHHHHHHTSC----TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC------
T ss_pred             hccchHHH--HHHHHHHHHHHHHHHHHhC----CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc------
Confidence            77764421  2233333444444444332    22 2222                  34 5 88999998421      


Q ss_pred             CHHHHHHHHHHHHhCCc
Q 013235          425 AKAETLYIMDKMKGICA  441 (447)
Q Consensus       425 ~~~~~~~~~~~l~~~Gv  441 (447)
                       .....++.+.|...|+
T Consensus       316 -~~~~~~~l~~l~~~~~  331 (393)
T 1n8p_A          316 -AEAASKFASSTRLFTL  331 (393)
T ss_dssp             -HHHHHHHHHHCSSSEE
T ss_pred             -HHHHHHHHhhCCcceE
Confidence             2345566666544343

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.73  E-value=3.3e-16  Score=158.83  Aligned_cols=281  Identities=13%  Similarity=0.063  Sum_probs=170.1

Q ss_pred             CHHHHHHHHHHHHhcccc---cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235          117 HPYVVDSIVNQIKRIQHS---TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~---~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~  193 (447)
                      +|++.+++.++++.....   ......+...+++++|++.++.  +.+++++||++|++.+++.++. ..+++|++..++
T Consensus        15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--~~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~~~~~   91 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--PYCVPTTSGSTALMLALEALGI-GEGDEVIVPSLT   91 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSS
T ss_pred             CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCc
Confidence            689999999999875322   1112234478899999998854  3578899999999999997632 345789999999


Q ss_pred             cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (447)
Q Consensus       194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~  273 (447)
                      |++........             |...+..|... ..+..|    .++|++.+.    .++++|+++.   ..|...  
T Consensus        92 ~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~--  144 (418)
T 2c81_A           92 WIATATAVLNV-------------NALPVFVDVEA-DTYCID----PQLIKSAIT----DKTKAIIPVH---LFGSMA--  144 (418)
T ss_dssp             CTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHGGGCC----TTEEEECCBC---CTTCCC--
T ss_pred             cHhHHHHHHHc-------------CCEEEEEecCC-CCCCcC----HHHHHHhhC----CCCeEEEEeC---CcCCcc--
Confidence            99876544322             22222222111 122234    556665553    2577777654   455543  


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCcc-ccCCCcccccccCCCCCEEE--e--eccccCCccccccccC-HHHHHhhcC
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVT--M--AKGIGNGIPLGAVVTT-PEIAEVLTR  347 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfg-r~G~~~~~~~~~gv~pDivt--~--sK~lg~G~pigav~~~-~~i~~~l~~  347 (447)
                        .+++|.++|++||+++|+||+|+.+. ..|      ...+..+|+++  |  +|.+++| +.|+++++ +++++.+..
T Consensus       145 --~~~~i~~~~~~~~~~li~D~a~~~~~~~~~------~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~  215 (418)
T 2c81_A          145 --NMDEINEIAQEHNLFVIEDCAQSHGSVWNN------QRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQ  215 (418)
T ss_dssp             --CHHHHHHHHHHTTCEEEEECTTCTTCEETT------EETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHH
T ss_pred             --cHHHHHHHHHHCCCEEEEECcccccCccCC------EecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHH
Confidence              39999999999999999999998764 223      12223346664  4  8999988 89999984 777665542


Q ss_pred             C-cccc-----------cCC--------------CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          348 R-NYFN-----------TFG--------------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       348 ~-~~~~-----------T~~--------------~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      . .+..           .|.              .+++.++.++..++.+  +++.++.+++.+++.+.|.++    +.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~  289 (418)
T 2c81_A          216 LRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----DGI  289 (418)
T ss_dssp             HHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----TTE
T ss_pred             HHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCc
Confidence            1 0100           011              2455444444445433  235566666677777766543    222


Q ss_pred             eeE-eecc----e--eEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cce---eecc
Q 013235          402 GDV-RGRG----F--LLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CAL---FFSQ  446 (447)
Q Consensus       402 ~~v-rg~G----l--~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvl---v~~~  446 (447)
                      .-. ...|    .  ++.+.+.+....    .....++.+.|.++ ||.   ++..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~~gI~~~~v~~~  341 (418)
T 2c81_A          290 KVMKRPPQVSRQTYYGYVFRFDPVKFG----GLNADQFCEILREKLNMGTFYLHPP  341 (418)
T ss_dssp             EECCCCTTEEECCCSEEEEEECGGGTT----TCCHHHHHHHHHHHHTCCTTTEECC
T ss_pred             ccCCCCCCCcccccEEEEEEEcccccc----ccCHHHHHHHHHHcCCCCccccccc
Confidence            111 1122    2  344555320000    00145788999999 999   7653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.73  E-value=6.7e-16  Score=160.50  Aligned_cols=313  Identities=11%  Similarity=0.044  Sum_probs=180.4

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHH----HHHHHHHHhCCCCC-ceEEEcCCHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIA----DFAEALASKMPGNL-KVVFFTNSGTE  169 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~----elae~L~~~~~~~~-~~v~~~~sGse  169 (447)
                      ..+..|+|+..+      ++.+|.+.+++...+-...  ...+ ..+...    ++.++|+++++.+. +.++|++|||+
T Consensus        98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~  169 (497)
T 2qma_A           98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQS--MDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ  169 (497)
T ss_dssp             TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCCC--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred             CCCCCeeEeCCC------CCcHHHHHHHHHHHhhccc--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence            456678888754      4567888888765443211  1112 123333    44566888885433 67999999999


Q ss_pred             HHHHHHHHHHhh------------cC-----CC-eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          170 ANELAIMMARLY------------TG-----CN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       170 A~e~Aik~ar~~------------t~-----~~-~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      ||..|++.+|.+            .|     ++ .|++. ...|.....+....+..       ...+..++...    .
T Consensus       170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s-~~~h~s~~~~~~~~g~g-------~~~v~~v~~~~----~  237 (497)
T 2qma_A          170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCS-KKSHFTVQKSASWMGLG-------EKAVMTVDANA----D  237 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEE-TTSCTHHHHHHHHTTSC-------GGGEEEECBCT----T
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEEC-CCchHHHHHHHHHcCCC-------cccEEEEecCC----C
Confidence            999999998642            12     23 44444 44554444443332210       00233444321    1


Q ss_pred             CCCChHHHHHHHHHHHHccC-CC-CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235          232 FGADGEMYAKDVQDLIDFGT-SG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~-~~-~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~  309 (447)
                      +..|    .++|++.++... .+ ++.+|++...++++|.+.+    +++|.++|++||+++++||+|.|+...+ . +.
T Consensus       238 ~~~d----~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~-~-~~  307 (497)
T 2qma_A          238 GTMD----ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILS-S-HK  307 (497)
T ss_dssp             SSBC----GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGS-T-TG
T ss_pred             CcCC----HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhC-c-ch
Confidence            2234    345666554321 11 3557777766777787665    9999999999999999999999887655 3 33


Q ss_pred             ccccCC-CCCEEEe--eccccCCccccccccCHH-HHHhhcCCc-cc---ccCCCChHHH----------HHHHHHHHHH
Q 013235          310 FEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-IAEVLTRRN-YF---NTFGGNPVCT----------AAGHAVLKVI  371 (447)
Q Consensus       310 ~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~-i~~~l~~~~-~~---~T~~~np~a~----------aaala~L~~i  371 (447)
                      ....++ .+|++++  +|.+++++++|+++.+++ .++.+.... +.   .+...+++..          .+..++|+.+
T Consensus       308 ~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l  387 (497)
T 2qma_A          308 SRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV  387 (497)
T ss_dssp             GGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT
T ss_pred             HhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh
Confidence            334566 7899987  899988889999987644 344443211 11   1111222222          1223455555


Q ss_pred             hhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          372 QKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       372 ~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ..+   ++.++..+++++|.+.|+++. .+.++.  ...+.++.+.+.....   .......++.+.|.++|+++.
T Consensus       388 g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~--~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~~G~~~~  457 (497)
T 2qma_A          388 GPKALGDMYDHLLAQTLEVADMIRTND-QFELLA--EPSLSTVLFRATHETA---DLDELNKALRLEALTRGIAVL  457 (497)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCT-TEEECS--CCSSSEEEEEECCSSS---CHHHHHHHHHHHHHHHTSCBC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEc--CCCceEEEEEEcCCcc---CHHHHHHHHHHHHHhCCCEEE
Confidence            443   456667777888887776541 222222  2345577777753211   111234567888999998874

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.72  E-value=8.7e-18  Score=176.73  Aligned_cols=220  Identities=11%  Similarity=0.066  Sum_probs=137.2

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHH-HhCCC-----CCceEEEcCCHHHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALA-SKMPG-----NLKVVFFTNSGTEANELA  174 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~-~~~~~-----~~~~v~~~~sGseA~e~A  174 (447)
                      ++||..|.    .++.+|.+++++.+++....+....+..+...++++.+. +....     +.++|+++++++||+..+
T Consensus       106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~  181 (546)
T 2zy4_A          106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI  181 (546)
T ss_dssp             HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred             hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence            46665544    367788899988887753322222222334445454443 22211     347899999999999999


Q ss_pred             HHHH--Hhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          175 IMMA--RLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       175 ik~a--r~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ++..  +.. .+++.|++.+++|++....+....           .|...++.|....+.|..|    .++|++.+.   
T Consensus       182 ~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~-----------~g~~~~~v~~~~~~~~~~d----~~~l~~~~~---  243 (546)
T 2zy4_A          182 FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQ-----------YALEEVAINADPSLNWQYP----DSELDKLKD---  243 (546)
T ss_dssp             HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTT-----------SCCEEEEEECBGGGTTBCC----HHHHGGGGS---
T ss_pred             HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcC-----------CCcEEEEEecCcccCCCCC----HHHHHHhhC---
Confidence            9863  323 346789999999998776543211           0222222222222223334    455655432   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHH--HHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-C
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI--KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-N  328 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~--~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~  328 (447)
                       .++.+|++...++++|.+. +.+.+++|.++|  +++|+++|+||+|.+|......+... ..+....+.+|||.+| .
T Consensus       244 -~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~-~~~~~i~~~S~SK~~g~~  320 (546)
T 2zy4_A          244 -PAIKIFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAI-CPENTLLVYSFSKYFGAT  320 (546)
T ss_dssp             -TTEEEEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHH-CGGGEEEEEESTTTTTCG
T ss_pred             -CCCeEEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHh-CCCCEEEEEeCccccCCC
Confidence             2566666556677778765 678899999999  78999999999999886532112111 1122223447999997 7


Q ss_pred             CccccccccCHH-HHHhh
Q 013235          329 GIPLGAVVTTPE-IAEVL  345 (447)
Q Consensus       329 G~pigav~~~~~-i~~~l  345 (447)
                      |+|+|+++++++ +++.+
T Consensus       321 GlRiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          321 GWRLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             GGCEEEEEEESSCHHHHH
T ss_pred             CcceEEEEECCHHHHHHH
Confidence            999999999875 76655

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.71  E-value=5e-17  Score=167.59  Aligned_cols=259  Identities=17%  Similarity=0.090  Sum_probs=164.9

Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      +.++...+++++|+++++.  +.+++++||++|+..+++   ...+++.||+.+++||+.........         ...
T Consensus       130 ~g~~~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~l~---~~~~Gd~Vi~~~~~y~~~~~~~~~~~---------~~~  195 (464)
T 1ibj_A          130 SGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQVV---------PRS  195 (464)
T ss_dssp             TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTS---------GGG
T ss_pred             CCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHH---HhCCCCEEEEECCCchhHHHHHHHHH---------HHc
Confidence            4566788899999998854  467888999999998875   23466889999999987542210000         011


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~  297 (447)
                      |...+..|.       .|    .+++++.+.    +++++|++++.++++|.+.+    +++|.++|++||+++|+||+|
T Consensus       196 G~~v~~v~~-------~d----~~~l~~~i~----~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~  256 (464)
T 1ibj_A          196 GVVVKRVNT-------TK----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSI  256 (464)
T ss_dssp             TCEEEEECT-------TS----HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTT
T ss_pred             CCEEEEeCC-------CC----HHHHHHHhc----cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCC
Confidence            232222221       13    567777664    36889999999999998885    999999999999999999999


Q ss_pred             cCccccCCCcc-cccccCCCCCEE--EeeccccC--CccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          298 AGFARTGSHFW-GFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       298 tGfgr~G~~~~-~~~~~gv~pDiv--t~sK~lg~--G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      +.    | ..+ ..+   ..+|++  +++|.+++  |+++|+++++ +++++.+........++.+|+++.+++++|+.+
T Consensus       257 ~~----g-~~~~~~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~  328 (464)
T 1ibj_A          257 MS----P-VLSRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_dssp             TC----T-TTCCGGG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred             cc----c-ccCChhh---cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence            63    2 121 122   346888  48899986  8899999998 478777653221123445788888888887543


Q ss_pred             hh--hhHHHHHHHHHHHHHHHH------HHHHHhcCCe----eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC
Q 013235          372 QK--DKLQNNAHVVGSYLKERL------TALKDKYGII----GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI  439 (447)
Q Consensus       372 ~~--~~l~~~~~~~g~~l~~~L------~~l~~~~~~i----~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~  439 (447)
                      ..  +...+++..+.+++++.-      .+..++++.+    ...+|.|.|+++++. +       .....++.+.|+..
T Consensus       329 ~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~-------~~~~~~~~~~L~~~  400 (464)
T 1ibj_A          329 ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-S-------VALSKHLVETTKYF  400 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-C-------HHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-C-------HHHHHHHHHhcCcc
Confidence            21  222344444444443210      0000111111    123467889999872 1       12244677887777


Q ss_pred             Cceeec
Q 013235          440 CALFFS  445 (447)
Q Consensus       440 Gvlv~~  445 (447)
                      ||.++.
T Consensus       401 gi~v~~  406 (464)
T 1ibj_A          401 SIAVSF  406 (464)
T ss_dssp             EECSCC
T ss_pred             eEeecC
Confidence            777653

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.71  E-value=9.2e-16  Score=151.46  Aligned_cols=277  Identities=10%  Similarity=-0.035  Sum_probs=173.9

Q ss_pred             CCHHHHHHHHHHHHhccc-cccccc--chHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          116 CHPYVVDSIVNQIKRIQH-STVLYL--NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~-~~~~~~--~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      .+|+|.+++.+.+..... ....++  .+...++.+++++.+.. +.+.+++++||++|++.+++...   .+ ++++..
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---~~-~~i~~~   90 (362)
T 3ffr_A           15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---EK-KSFHCV   90 (362)
T ss_dssp             CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---SS-EEEEEE
T ss_pred             CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---CC-cEEEEc
Confidence            578999888888765321 111222  24567888999998854 34679999999999999998544   33 777777


Q ss_pred             CCcccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235          192 NAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (447)
Q Consensus       192 ~~yHG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~  270 (447)
                      ..+++...... ...+          ..+..++.+.    .+..|    .++++  +    ..++.+|+++..++++|.+
T Consensus        91 ~~~~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~--~----~~~~~~v~~~~~~nptG~~  146 (362)
T 3ffr_A           91 NGSFSKRFYEFAGELG----------REAYKEEAAF----GKGFY----PADIT--V----PADAEIICLTHNETSSGVS  146 (362)
T ss_dssp             CSHHHHHHHHHHHHTT----------CEEEEEECCT----TCCCC----GGGCC--C----CTTCCEEEEESEETTTTEE
T ss_pred             CcHHHHHHHHHHHHhC----------CCeEEEecCC----CCCCC----HHHHh--c----cCCccEEEEEcCCCCccee
Confidence            76666221111 1111          0122333221    12223    23444  1    2366788888888899988


Q ss_pred             eCCCChHHHHHHHHHHh-CCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcC
Q 013235          271 ELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTR  347 (447)
Q Consensus       271 ~~~~~~l~~l~~l~~~~-g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~  347 (447)
                      .+    +++|.++|++| |+++|+||+|..+...    .  +...  .|+++++  |.++++..+|++++++++++.+..
T Consensus       147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~----~--~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~  214 (362)
T 3ffr_A          147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK----F--DWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA  214 (362)
T ss_dssp             CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC----C--CTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred             CC----HHHHHHHHHhCCCCEEEEecccccCCcc----c--ChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence            87    99999999999 9999999998633211    1  1111  6888654  999844446788889988776643


Q ss_pred             Ccc--------------------c-ccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          348 RNY--------------------F-NTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       348 ~~~--------------------~-~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      ...                    . ..+..+..+++++.++++.+.++   ++.++.+++.+++.+.|+++    +.+.-
T Consensus       215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~  290 (362)
T 3ffr_A          215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSF  290 (362)
T ss_dssp             HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEE
T ss_pred             ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCcee
Confidence            111                    1 14455677777777888877654   45566666666776666553    22221


Q ss_pred             Ee-----ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          404 VR-----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       404 vr-----g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +.     ..+.++.+.+.+          ...++.+.|+++||.+.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g  328 (362)
T 3ffr_A          291 GVEDAKLRSMTTIVANTTM----------LPGEINKILEPFDMAVGAG  328 (362)
T ss_dssp             SSSCGGGBCSSEEEEEESS----------CHHHHHHHHGGGTEEEEEC
T ss_pred             ccCChhhcCCceEEEecCC----------CHHHHHHHHHHCCeEEecC
Confidence            11     124566666632          1467899999999998754

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.70  E-value=2.8e-16  Score=159.17  Aligned_cols=196  Identities=13%  Similarity=0.047  Sum_probs=136.8

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|+++...+|+++|+++++..  ..++++||++|+..+++ .  ...++.|++.++.||+.........         .
T Consensus        62 ~r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~---------~  127 (403)
T 3cog_A           62 SRSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVA---------S  127 (403)
T ss_dssp             ----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTG---------G
T ss_pred             cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHH---------H
Confidence            3567888899999999998653  45677889999999997 3  3356789999999987543221110         0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC-CEEEEe
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIAD  294 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g-~llI~D  294 (447)
                      ..|+.....|.       +|    .+++++.+.    +++.+|++|.+++++|.+.+    +++|.++|+++| +++|+|
T Consensus       128 ~~G~~v~~v~~-------~d----~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD  188 (403)
T 3cog_A          128 EFGLKISFVDC-------SK----IKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVD  188 (403)
T ss_dssp             GGTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEE
T ss_pred             HcCCEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEE
Confidence            11333222221       12    566776664    26789999999999999886    999999999999 999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEE--EeeccccC-C-ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~  369 (447)
                      |+|+++.. + .     ..+..+|++  +++|.+++ | .++|+++++ +++++.+.......+...+|+.+++++..|+
T Consensus       189 ~~~~~~~~-~-~-----~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~  261 (403)
T 3cog_A          189 NTFMSPYF-Q-R-----PLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK  261 (403)
T ss_dssp             CTTTCTTT-C-C-----TTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             CCCccccc-C-C-----ccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence            99986532 2 1     122457888  57899985 4 689999985 7888777643333445578999888888876


Q ss_pred             HH
Q 013235          370 VI  371 (447)
Q Consensus       370 ~i  371 (447)
                      .+
T Consensus       262 ~l  263 (403)
T 3cog_A          262 TL  263 (403)
T ss_dssp             TH
T ss_pred             HH
Confidence            54

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.69  E-value=2.6e-16  Score=159.43  Aligned_cols=246  Identities=11%  Similarity=0.046  Sum_probs=148.5

Q ss_pred             eEEEecCCcccccCC--CCCHHHHHHHHHHH-Hhccccccccc-chHHHHHHHHHHHhC----C--CCCc--eEEEcCCH
Q 013235          100 RYLDAFGGIATVCCG--HCHPYVVDSIVNQI-KRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK--VVFFTNSG  167 (447)
Q Consensus       100 ~ylD~~~g~~~~~lG--h~~p~v~~A~~~~l-~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~~--~v~~~~sG  167 (447)
                      ..|||..|....+=|  ...+.|.+|.. .+ +..  ....|. .....+|.+.+++++    .  ...+  .++.+++|
T Consensus        30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~  106 (405)
T 3k7y_A           30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENY--KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGG  106 (405)
T ss_dssp             SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHC--CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHH
T ss_pred             CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCC--CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCch
Confidence            357777665322112  23577777765 32 221  112232 334456666666543    1  1123  36899999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (447)
Q Consensus       168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (447)
                      ++|+..++++.....+ +.|++.+++|.+........             |...+..|......|+-|    .+++++.+
T Consensus       107 ~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l  168 (405)
T 3k7y_A          107 TGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-------------GFNLKYINFFDYNLIDIN----YDLFLNDL  168 (405)
T ss_dssp             HHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-------------TCEEEEECCEETTTTEEC----HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-------------CCeEEEEeccccccCCcC----HHHHHHHH
Confidence            9999999986654446 99999999998776544332             333333332111123345    56777777


Q ss_pred             HccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Ccccccc-cCCCCCEE---
Q 013235          248 DFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEA-HGVVPDIV---  320 (447)
Q Consensus       248 ~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~~-~gv~pDiv---  320 (447)
                      ... + +..++++.| .++++|.+. +.+.+++|.++|++||+++|.||+|.+|...+.  ..+.... ....+.++   
T Consensus       169 ~~~-~-~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  245 (405)
T 3k7y_A          169 RNI-P-NGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQ  245 (405)
T ss_dssp             HHS-C-SSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEE
T ss_pred             HhC-C-CCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEe
Confidence            542 1 334666665 578888775 788999999999999999999999999865431  1111211 12223444   


Q ss_pred             Eeecccc-CCccccccc---cCHHHHHhhcCC---cccccCC-CChHHHHHHHHHHH
Q 013235          321 TMAKGIG-NGIPLGAVV---TTPEIAEVLTRR---NYFNTFG-GNPVCTAAGHAVLK  369 (447)
Q Consensus       321 t~sK~lg-~G~pigav~---~~~~i~~~l~~~---~~~~T~~-~np~a~aaala~L~  369 (447)
                      +|||.++ .|+|+|+++   .++++++.+...   ....+++ .+.++++++.+.|+
T Consensus       246 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~  302 (405)
T 3k7y_A          246 SFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLN  302 (405)
T ss_dssp             ECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred             eCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhC
Confidence            6999999 899999975   367766544321   1123343 34566666666664

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.66  E-value=5e-15  Score=151.10  Aligned_cols=252  Identities=17%  Similarity=0.121  Sum_probs=156.9

Q ss_pred             cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ..++.++...+|+++|+++.+.  +.+++++||++|+..+++..  ..+++.||+.+++|++.........         
T Consensus        76 y~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~---------  142 (430)
T 3ri6_A           76 YSRSSNPTVEDLEQRLKNLTGA--LGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTL---------  142 (430)
T ss_dssp             ----CCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHH---------
T ss_pred             ccCCCCHHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH---------
Confidence            3456788999999999999854  45778899999999999865  3366889999999986554221000         


Q ss_pred             cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                      ...|+.....+.       +|    .+++++.+.    .++++|++|..++++|.+.+    +++|.++|+++|+++|+|
T Consensus       143 ~~~G~~~~~v~~-------~d----~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD  203 (430)
T 3ri6_A          143 PSFGIEVRFVDV-------MD----SLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVD  203 (430)
T ss_dssp             HHTTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEE
T ss_pred             HHcCCEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence            011333222221       13    567777664    26889999999999998886    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEE--EeeccccC-Ccccccccc---CHHH------------------HHhhcCCcc
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVT---TPEI------------------AEVLTRRNY  350 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pigav~~---~~~i------------------~~~l~~~~~  350 (447)
                      |+++    +| .++....+|.  |++  +++|.+++ |..+|.++.   +..+                  ++.+... .
T Consensus       204 ~a~~----~~-~~~~~~~~g~--div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-~  275 (430)
T 3ri6_A          204 TTMT----PP-YLLEAKRLGV--DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-V  275 (430)
T ss_dssp             CTTS----CT-TTCCGGGGTC--SEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-H
T ss_pred             CCCc----cc-ccCChHHcCC--EEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-H
Confidence            9996    23 2222234555  555  57799986 444555443   2111                  1111110 1


Q ss_pred             cccCC--CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-----------------ecce-e
Q 013235          351 FNTFG--GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-----------------GRGF-L  410 (447)
Q Consensus       351 ~~T~~--~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-----------------g~Gl-~  410 (447)
                      ..+++  .+|+.++.++..|+.+..  ..++..++.+++.+.|+    +++.+..|.                 |.|. |
T Consensus       276 ~~~~g~~~~~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~----~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~  349 (430)
T 3ri6_A          276 FQNLGPSLSPHNAYLQSLGLETMAL--RIERSCQNAQELAHWLL----SIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSI  349 (430)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT----TCTTCEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred             HHhcCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHh----CCCCccEEECCCCCCCccHHHHHHhCCCCceE
Confidence            12223  367777777777765532  23444455555555443    456666665                 3466 9


Q ss_pred             EEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235          411 LGVEFVTDRQLKTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~G  440 (447)
                      ++|++.        ..+.+.++.+.|+-.+
T Consensus       350 lsf~l~--------~~~~~~~~~~~l~~~~  371 (430)
T 3ri6_A          350 LTFELE--------SKEASYRFMDALKLIR  371 (430)
T ss_dssp             EEEECS--------SHHHHHHHHHHCSSSE
T ss_pred             EEEEEC--------CHHHHHHHHHhCCcce
Confidence            999984        2234567777665443

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.65  E-value=2.6e-14  Score=144.83  Aligned_cols=287  Identities=12%  Similarity=0.085  Sum_probs=173.3

Q ss_pred             CCHHHHHHHHHHHHh---ccc-ccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235          116 CHPYVVDSIVNQIKR---IQH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII  188 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~---~~~-~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii  188 (447)
                      |+++|.+|+.+....   ... +...|......+|++++++++..  +..++   ++||++|+..+++...  ..++.|+
T Consensus        30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~~GD~Vl  105 (409)
T 3jzl_A           30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT--EAALVRPQIISGTHAISTVLFGIL--RPDDELL  105 (409)
T ss_dssp             HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHC--CTTCEEE
T ss_pred             hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhc--CCCCEEE
Confidence            457788887775321   111 12246667788999999999854  34445   8999999999997542  3567888


Q ss_pred             EEc-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc----c
Q 013235          189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I  263 (447)
Q Consensus       189 ~~~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep----i  263 (447)
                      +.+ +.|.+.. .....++.  +.......|+.....|...  .+..|    .+++++.+.    .++.+|++|+    .
T Consensus       106 ~~~~~~y~~~~-~~~~~~g~--~~~~l~~~G~~~~~v~~~~--~g~~d----~e~l~~ai~----~~tklV~i~~s~g~p  172 (409)
T 3jzl_A          106 YITGQPYDTLE-EIVGIRKQ--GQGSLKDFHIGYSSVPLLE--NGDVD----FPRIAKKMT----PKTKMIGIQRSRGYA  172 (409)
T ss_dssp             ECSSSCCTTHH-HHHTSSSS--SSSCTGGGTCEEEECCCCT--TSCCC----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred             EeCCCCcHhHH-HHHhcccc--hhhHHHHcCCEEEEeCCCC--CCCcC----HHHHHHhcc----CCCeEEEEECCCCCC
Confidence            887 5554432 22221111  0000111233333332211  12234    566776664    2678999998    8


Q ss_pred             cCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC-cc-cccccc
Q 013235          264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG-IP-LGAVVT  337 (447)
Q Consensus       264 ~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G-~p-igav~~  337 (447)
                      .++.|.+.+    +++|.++|++  +|+++|+||+|..+....      +......|++  +++|.++++ -+ .|++++
T Consensus       173 ~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~------~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~  242 (409)
T 3jzl_A          173 DRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQ------EPPEVGADIIAGSLIKNPGGGLAKTGGYIAG  242 (409)
T ss_dssp             SSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSC------CSGGGTCSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred             CCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccC------CccccCCeEEEECccccCCccCCceEEEEEe
Confidence            888888876    9999999999  999999999986432111      1112235887  578999975 34 588999


Q ss_pred             CHHHHHhhcCC--c--ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCeeeEeecceeEE
Q 013235          338 TPEIAEVLTRR--N--YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLG  412 (447)
Q Consensus       338 ~~~i~~~l~~~--~--~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~i~~vrg~Gl~~g  412 (447)
                      ++++++.+...  .  ...+.+..+..+.+++..|+.+  +...++..+...++.+.|+++-.+. +. .+-++..+++.
T Consensus       243 ~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~-~~~~~~~~i~~  319 (409)
T 3jzl_A          243 KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV-WDAPRTDLIQS  319 (409)
T ss_dssp             CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC-TTSCCSSSCCE
T ss_pred             CHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCCccEEEE
Confidence            99999887642  1  1123333332233444445433  3456667777888888887752110 00 01123344888


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~G  440 (447)
                      |++.        +.+.+.++++.|.+..
T Consensus       320 i~l~--------~~~~~~~~~~~L~~~~  339 (409)
T 3jzl_A          320 VSFH--------NKEKMVAFAQAIQAAS  339 (409)
T ss_dssp             EECS--------CHHHHHHHHHHHHHTS
T ss_pred             EEeC--------CHHHHHHHHHHHHhcC
Confidence            8873        2355778888888765

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.63  E-value=1.3e-15  Score=156.25  Aligned_cols=255  Identities=11%  Similarity=0.006  Sum_probs=155.4

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      +.....++.+.+++ ++.+ +.++|+|||++|+..+++.+.  .++++|++.+++|++........ +..          
T Consensus        55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--~~gd~Vlv~~~~h~s~~~~~~~~-G~~----------  119 (446)
T 2x3l_A           55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--QKKGDILMARNVHKSVLHALDIS-QQE----------  119 (446)
T ss_dssp             CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--TSSSCEEECTTCCHHHHHHHHHH-TCC----------
T ss_pred             cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--CCCCEEEEecCccHHHHHHHHHc-CCe----------
Confidence            34566788888888 7654 678999999999999998663  36688999999888766544332 211          


Q ss_pred             eEeecC--CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          219 VHHALN--PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       219 ~~~~~~--p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      +..++.  ...+...+..|    .+++   +.   + +++++++++ ++.+|.+.+    +++|.++|++||+++|+||+
T Consensus       120 ~~~v~~~~~~~~~~~~~~d----~~~l---~~---~-~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea  183 (446)
T 2x3l_A          120 GHFIETHQSPLTNHYNKVN----LSRL---NN---D-GHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEA  183 (446)
T ss_dssp             EEECEEEECTTTSSEEEEE----C--------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECT
T ss_pred             EEEEeCeeccccCcCCCCC----HHHH---cC---C-CceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcch
Confidence            111111  00000001112    1223   11   2 456677776 555788776    99999999999999999999


Q ss_pred             ccC-ccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHH--hhcCC-cccccCCCChHHHHHHHHHHHH
Q 013235          297 QAG-FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAE--VLTRR-NYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       297 ~tG-fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~--~l~~~-~~~~T~~~np~a~aaala~L~~  370 (447)
                      |++ +...| ..+.....  .+|+++.|  |.++++.++|++++++++++  .+... ....+.+.+...+++..++++.
T Consensus       184 ~~~~~~f~~-~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~  260 (446)
T 2x3l_A          184 HGAHFGLQG-FPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF  260 (446)
T ss_dssp             TCTTTTSTT-SCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred             hhhhhccCC-CCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            986 32333 22222223  37999876  98887778899998877643  22211 1223455666766666667777


Q ss_pred             Hhhh--h-HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          371 IQKD--K-LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       371 i~~~--~-l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++.  + +.++.+++.+++++.      .+..+.  ...+..+.+.+. .        ....++.+.|+++||.+.
T Consensus       261 l~~~g~~~~~~~~~~l~~~l~~~------g~~~~~--~~~~~~l~i~~~-~--------~~~~~l~~~L~~~GI~v~  320 (446)
T 2x3l_A          261 YKTYDSTLFFAKRAQLIECLENK------GFEMLQ--VDDPLKLLIKYE-G--------FTGHDIQNWFMNAHIYLE  320 (446)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHH------TCEEEE--CSSTTEEEEECT-T--------SCHHHHHHHHHHTTEEES
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHc------CCEECc--CCCCeEEEEEeC-C--------cCHHHHHHHHHHCCCEEE
Confidence            7653  2 677777777777665      221111  112334555542 0        013568889999999986

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.63  E-value=9.7e-15  Score=148.36  Aligned_cols=240  Identities=13%  Similarity=0.040  Sum_probs=152.9

Q ss_pred             ccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       132 ~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      .|...++.++...+++++|+++.+.  +.+++++||++|+.++++...  ..++.||+....|++.........      
T Consensus        73 ~~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssGt~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~l------  142 (415)
T 2fq6_A           73 ELFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAYEPSQDFCSKIL------  142 (415)
T ss_dssp             SCCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEETTSCHHHHHHHHHTG------
T ss_pred             CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHH------
Confidence            3555667789999999999999864  356677999999999998432  256789999999886442211100      


Q ss_pred             ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH--hCC
Q 013235          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGG  289 (447)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~--~g~  289 (447)
                         ...|+.....+.       +|    .+++++.+.    .++.+|++|.+++++|.+.+    +++|.++|++  +|+
T Consensus       143 ---~~~G~~v~~v~~-------~d----~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~  200 (415)
T 2fq6_A          143 ---SKLGVTTSWFDP-------LI----GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDA  200 (415)
T ss_dssp             ---GGGTCEEEEECT-------TC----GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTC
T ss_pred             ---HHcCcEEEEECC-------CC----HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCC
Confidence               011332222111       12    345665553    25789999999999999887    9999999999  999


Q ss_pred             EEEEeccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal  365 (447)
                      ++|+||+|... ..+ ..     .....|+++  ++|.+++ | ...|++++++++++.+...........+|..++.++
T Consensus       201 ~livD~a~a~~-~~~-~p-----~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~  273 (415)
T 2fq6_A          201 IIMIDNTWAAG-VLF-KA-----LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITS  273 (415)
T ss_dssp             EEEEECTTTTT-TSS-CG-----GGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             EEEEECCCccc-ccC-Cc-----cccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999632 112 11     123468884  6799986 4 456899998887776653211111123577666666


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEe
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFV  416 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~  416 (447)
                      ..|+.+..  ..++..++...+.+.|++.    +.+..+                  +|.|.++.|++.
T Consensus       274 ~~l~~l~~--r~~~~~~n~~~l~~~L~~~----~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~  336 (415)
T 2fq6_A          274 RGLRTLGV--RLRQHHESSLKVAEWLAEH----PQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK  336 (415)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES
T ss_pred             hhhhHHHH--HHHHHHHHHHHHHHHHHcC----CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence            66665422  2333344455555555443    222221                  356889999984

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.62  E-value=7.3e-14  Score=140.06  Aligned_cols=284  Identities=12%  Similarity=0.018  Sum_probs=173.8

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHH-HHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L-~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      ..|++.+|+.+.++....+.   ..+...+|++++ ++++. ..+.+++++||++|+..+++.+. ...++.||+...+|
T Consensus        14 ~~~~i~~a~~~~~~~~~~~~---~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~-~~~Gd~Vi~~~~~~   88 (377)
T 3ju7_A           14 PVIEYLDELKEIDASHIYTN---YGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKK-RKKGKYALMPSFTF   88 (377)
T ss_dssp             CGGGGHHHHHHHHHHTCCSS---SCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHS-CTTCCEEEEESSSC
T ss_pred             CcHHHHHHHHHHHHcCCccc---CCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCc
Confidence            45788999998887753211   256788999999 99985 24678899999999999998652 23568899999998


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~  274 (447)
                      .+........             |...+..+... ..|..|    .+++++.+.... .++.+|+  |++ ..|...+  
T Consensus        89 ~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~~~~-~~tk~v~--~~~-~~G~~~~--  144 (377)
T 3ju7_A           89 PATPLAAIWC-------------GLEPYFIDISI-DDWYMD----KTVLWDKIEELK-EEVAIVV--PYA-TFGSWMN--  144 (377)
T ss_dssp             THHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHHHHHHHHG-GGEEEEC--CBC-GGGBCCC--
T ss_pred             HHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHHHhcCC-CCceEEE--EEC-CCCCccC--
Confidence            7644332221             22222222110 123335    567777663210 1266666  333 4566554  


Q ss_pred             ChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCCCCEEEee----ccccCCcccccccc-CHHHHHhhcCC
Q 013235          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMA----KGIGNGIPLGAVVT-TPEIAEVLTRR  348 (447)
Q Consensus       275 ~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~pDivt~s----K~lg~G~pigav~~-~~~i~~~l~~~  348 (447)
                        +++|.++|+ ||+++|+|++|+ +|.    .+..... +...|+.++|    |.+++| ..|++++ ++++++.+...
T Consensus       145 --~~~i~~la~-~~~~vi~D~a~a-~g~----~~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~  215 (377)
T 3ju7_A          145 --LEEYEELEK-KGVPVVVDAAPG-FGL----MNGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRM  215 (377)
T ss_dssp             --CHHHHHHHH-TTCCBEEECTTC-TTC----EETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHH
T ss_pred             --HHHHHHHHh-cCCEEEEECCCc-cCC----eECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHH
Confidence              899999999 999999999996 432    1111223 2336888776    999875 4566665 46666554321


Q ss_pred             -cc-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCeee--EeecceeEEE
Q 013235          349 -NY-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YGIIGD--VRGRGFLLGV  413 (447)
Q Consensus       349 -~~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~~~i~~--vrg~Gl~~gi  413 (447)
                       .+           +..+.-+++.++.+++.|+.++  ...++.+++.+++.+.|.++..- ......  ....-+++.+
T Consensus       216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  293 (377)
T 3ju7_A          216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWD--DKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPI  293 (377)
T ss_dssp             TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEE
T ss_pred             HhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEE
Confidence             11           2345567888888888887553  45667777788888887765210 111100  0111123334


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHhCCceeeccC
Q 013235          414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY  447 (447)
Q Consensus       414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~~  447 (447)
                      .+.+.        ....++.+.|.++||.++..|
T Consensus       294 ~~~~~--------~~~~~l~~~L~~~gI~~~~~~  319 (377)
T 3ju7_A          294 LCPEE--------VRNKQVIEDLKKQKIEARLYF  319 (377)
T ss_dssp             ECCTT--------SCHHHHHHHHHTTTBCCBCTT
T ss_pred             EeCCh--------hhHHHHHHHHHHCCCceeccc
Confidence            33210        014679999999999887643

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.59  E-value=3.6e-13  Score=138.07  Aligned_cols=292  Identities=14%  Similarity=0.021  Sum_probs=163.7

Q ss_pred             CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCCCc-----eEEEcCCHHHHHHHHHHHHHhh-------
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLK-----VVFFTNSGTEANELAIMMARLY-------  181 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~~~-----~v~~~~sGseA~e~Aik~ar~~-------  181 (447)
                      .||.+.+++.+.++........++  .....++.+.|+++++.+.+     .+++++||+||+..+++.++..       
T Consensus        54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~  133 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA  133 (452)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            568999998887764321111222  23345677778888865443     3899999999999999887641       


Q ss_pred             cC----CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          182 TG----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       182 t~----~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      .|    ++.||+.+  .|.....+....            |+..+..|... ..+..|    .++|++.+..    ++.+
T Consensus       134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~------------G~~v~~v~~~~-~~~~~d----~~~l~~~i~~----~t~~  190 (452)
T 2dgk_A          134 AGKPTDKPNLVCGP--VQICWHKFARYW------------DVELREIPMRP-GQLFMD----PKRMIEACDE----NTIG  190 (452)
T ss_dssp             TTCCCSCCEEEESS--CCHHHHHHHHHT------------TCEEEECCCBT-TBCSCC----HHHHHHHCCT----TEEE
T ss_pred             cCCCCCCcEEEECC--CcHHHHHHHHHc------------CceEEEEecCC-CCCeEC----HHHHHHHHhh----CCEE
Confidence            23    34666655  664444333222            22222222211 123334    5677777642    4566


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHh------CCEEEEeccccCccc---cCCCcccccccCCCCCEEEee--ccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KGI  326 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tGfgr---~G~~~~~~~~~gv~pDivt~s--K~l  326 (447)
                      |++.-..+.+|.+.+    +++|.++|+++      |+++++||+|.++..   .+...+.++.  ...|.++++  |.+
T Consensus       191 v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~  264 (452)
T 2dgk_A          191 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFG  264 (452)
T ss_dssp             EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTT
T ss_pred             EEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECccccc
Confidence            666655556788766    99999999996      999999999987632   1211111111  135777665  865


Q ss_pred             cCCccccccccCHH-HH-HhhcCC-ccc----cc--CCCC--hHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 013235          327 GNGIPLGAVVTTPE-IA-EVLTRR-NYF----NT--FGGN--PVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLT  392 (447)
Q Consensus       327 g~G~pigav~~~~~-i~-~~l~~~-~~~----~T--~~~n--p~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~  392 (447)
                      .+|+.+|+++++++ ++ +.+... .+.    .+  ..+.  .....+..++|+.+..+.   ..++..++.++|.+.|+
T Consensus       265 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~  344 (452)
T 2dgk_A          265 LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA  344 (452)
T ss_dssp             CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999998643 32 433211 111    01  1111  112233334454443333   44555566666666665


Q ss_pred             HHHHhcCCeeeE-e----ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          393 ALKDKYGIIGDV-R----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       393 ~l~~~~~~i~~v-r----g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++    +.+.-+ +    ....++.+.+........    ...++.+.|.++|++++
T Consensus       345 ~~----~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~----~~~~l~~~L~~~Gi~v~  393 (452)
T 2dgk_A          345 KL----GPYEFICTGRPDEGIPAVCFKLKDGEDPGY----TLYDLSERLRLRGWQVP  393 (452)
T ss_dssp             TT----SSEEEEEECCTTTBSSEEEEEECTTCCCSC----CHHHHHHHHHHTTCBCC
T ss_pred             hC----CCeEEecCCCCCCCeEEEEEEecCcccccC----CHHHHHHHHHhcCCeee
Confidence            43    323222 2    245666676642110000    13568899999999764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.58  E-value=3.5e-13  Score=137.11  Aligned_cols=284  Identities=13%  Similarity=0.078  Sum_probs=170.6

Q ss_pred             CCHHHHHHHHHHHHhc---c-cccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235          116 CHPYVVDSIVNQIKRI---Q-HSTVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII  188 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~---~-~~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii  188 (447)
                      |+++|.+|+.+.....   . .....|......+|++++++++..  +..++   ++||++||..++...  ..+++.|+
T Consensus        45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~--e~alv~p~~~sGt~A~~~al~al--l~pGD~Vl  120 (427)
T 3hvy_A           45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT--ESAFVRPHFVNGTHAIGAALFGN--LRPNDTMM  120 (427)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHT--CCTTCEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC--CceEEeCCCCcHHHHHHHHHHHh--cCCCCEEE
Confidence            4578888877643211   1 111235566788899999999854  44455   899999999998754  33568888


Q ss_pred             EEc-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc----c
Q 013235          189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I  263 (447)
Q Consensus       189 ~~~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep----i  263 (447)
                      +.+ +.|++..... ..... .+.......|+.....|. .  .+..|    .+++++.+.+.  .++.+|++++    .
T Consensus       121 ~~~~~~y~~~~~~~-g~~~~-~~~~~l~~~G~~~~~v~~-~--~~~~d----~e~l~~~i~~~--~~tklV~i~~s~gyp  189 (427)
T 3hvy_A          121 SICGMPYDTLHDII-GMDDS-KKVGSLREYGVKYKMVDL-K--DGKVD----INTVKEELKKD--DSIKLIHIQRSTGYG  189 (427)
T ss_dssp             ECSSSCCGGGHHHH-TCCTT-CCSCCTGGGTCEEEECCC-B--TTBCC----HHHHHHHHHHC--TTEEEEEEESSCCSS
T ss_pred             EeCCCCchhHHHHh-ccccc-hhhhHHHHcCCEEEEecC-C--CCCcC----HHHHHHHhhCC--CCCEEEEEECCCCCC
Confidence            888 7776554111 11100 000001112444333332 1  12234    56777777631  2678999999    7


Q ss_pred             cCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC--cccccccc
Q 013235          264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVT  337 (447)
Q Consensus       264 ~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pigav~~  337 (447)
                      .++.|.+.+    +++|.++|++  +|+++|+||++..+.... .     ......|++  +++|.++++  ...|++++
T Consensus       190 ~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~-~-----p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~  259 (427)
T 3hvy_A          190 WRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEK-E-----PTDVGADIIAGSLIKNIGGGIATTGGYIAG  259 (427)
T ss_dssp             SSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSS-C-----GGGGTCSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred             CCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCC-C-----CcccCCeEEEECCcccccccccceEEEEEE
Confidence            777777765    9999999999  899999999986442111 1     111234777  578999974  34588889


Q ss_pred             CHHHHHhhcCCc----ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-----ecc
Q 013235          338 TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-----GRG  408 (447)
Q Consensus       338 ~~~i~~~l~~~~----~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-----g~G  408 (447)
                      ++++++.+....    ...+.+.++..+..++..|+.+  +...++..+...++.+.|+++    +.-. .+     +..
T Consensus       260 ~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~  332 (427)
T 3hvy_A          260 KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTD  332 (427)
T ss_dssp             CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSS
T ss_pred             CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCce
Confidence            999998876421    1112222122234444444432  345666777777887777665    2211 22     233


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGI  439 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~  439 (447)
                      +++.|.+.        +.+.+.++++.|...
T Consensus       333 li~~~~l~--------~~~~~~~f~~~l~~~  355 (427)
T 3hvy_A          333 IIQAIKFN--------DEKKLIDFIKGIQTA  355 (427)
T ss_dssp             SEEEEECS--------SHHHHHHHHHHHHHT
T ss_pred             EEEEEeCC--------CHHHHHHHHHHhccc
Confidence            47788773        234567888888764

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.56  E-value=2.1e-13  Score=141.79  Aligned_cols=277  Identities=11%  Similarity=-0.017  Sum_probs=157.3

Q ss_pred             HHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhh-------cC----CC-eEEEEcCCcccCchhhhhccCCCC
Q 013235          144 ADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-------TG----CN-DIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       144 ~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~-------t~----~~-~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      .++.++|+++++.+  .+.++|++||||||..|++.+|.+       .|    ++ .|++.+.+ |.....+....+.. 
T Consensus       135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~-h~s~~~~~~~~g~g-  212 (504)
T 2okj_A          135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGFG-  212 (504)
T ss_dssp             HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSC-
T ss_pred             HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcc-hHHHHHHHHHcCCC-
Confidence            44556677777654  567999999999999999998753       23    13 45554444 44443333322210 


Q ss_pred             ccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                            ...+..++...    .+..|    .++|++.++..  ...++++|++....+..|.+.+    +++|.++|++|
T Consensus       213 ------~~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~  274 (504)
T 2okj_A          213 ------TDNVILIKCNE----RGKII----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKY  274 (504)
T ss_dssp             ------GGGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHH
T ss_pred             ------cccEEEEecCC----CCCCC----HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHc
Confidence                  00233444321    12234    56677666531  1125788888777777888766    99999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCH-HHHHh-hcCC-ccc---cc-----
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP-EIAEV-LTRR-NYF---NT-----  353 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~-~i~~~-l~~~-~~~---~T-----  353 (447)
                      |+++++|++|.|+..... -+.....++ .+|+++++  |.+++++++|++++++ ++++. +... .+.   .+     
T Consensus       275 g~~lhvD~a~~~~~~~~~-~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (504)
T 2okj_A          275 NLWLHVDAAWGGGLLMSR-KHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVS  353 (504)
T ss_dssp             TCEEEEEETTGGGGGGCT-TTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGG
T ss_pred             CCEEEEehhhhhHHHhCH-hhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCc
Confidence            999999999988754331 111222344 68999886  9888778899999876 46553 2111 111   00     


Q ss_pred             -----C------CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCC-C
Q 013235          354 -----F------GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-L  421 (447)
Q Consensus       354 -----~------~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~-~  421 (447)
                           +      ..+.+++.++++++..-.-+++.++..++.++|.+.|+++ ..+.++......+.++.+.+..... .
T Consensus       354 ~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~p~~~~v~f~~~~~~~~~  432 (504)
T 2okj_A          354 YDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRG  432 (504)
T ss_dssp             GCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEESSSSCCSSSCEEEEECCGGGSS
T ss_pred             CCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccccc
Confidence                 0      1235666666555542111235566667777777776653 1222221101234444555432110 0


Q ss_pred             CCCCH-------HHHHHHHHHHHhCCce
Q 013235          422 KTPAK-------AETLYIMDKMKGICAL  442 (447)
Q Consensus       422 ~~p~~-------~~~~~~~~~l~~~Gvl  442 (447)
                      .....       ....++.+.|.++|++
T Consensus       433 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~  460 (504)
T 2okj_A          433 VPDSPQRREKLHKVAPKIKALMMESGTT  460 (504)
T ss_dssp             CCCCHHHHHHHTTHHHHHHHHHHHHTSC
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhCCcE
Confidence            00000       1135688899999964

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.56  E-value=8.8e-13  Score=134.18  Aligned_cols=285  Identities=14%  Similarity=0.107  Sum_probs=169.4

Q ss_pred             CHHHHHHHHHHHH--h-ccc-ccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEEE
Q 013235          117 HPYVVDSIVNQIK--R-IQH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDIIS  189 (447)
Q Consensus       117 ~p~v~~A~~~~l~--~-~~~-~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii~  189 (447)
                      .++|.+|+.+...  . +.. ....|......+|++++++++..  +..++   ++||++|+..++....  .+++.|++
T Consensus        45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~pGD~Vl~  120 (427)
T 3i16_A           45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNT--ESALVRPHFVNGTHALGAALFGNL--RPGNTMLS  120 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHHC--CTTCEEEE
T ss_pred             HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCC--cceEEeCCCccHHHHHHHHHHHHh--CCCCEEEE
Confidence            3677777765421  1 111 11235567788999999999864  33344   8999999999987542  35678888


Q ss_pred             Ec-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc----cc
Q 013235          190 LR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----IQ  264 (447)
Q Consensus       190 ~~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep----i~  264 (447)
                      .+ +.|++..... ....... .......|+.....|....  ...|    .+++++.+.+.  .++.+|++++    ..
T Consensus       121 ~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~--g~~D----~e~l~~~l~~~--~~tklV~i~~s~~~p~  190 (427)
T 3i16_A          121 VCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKED--GKPN----LEEIEKVLKED--ESITLVHIQRSTGYGW  190 (427)
T ss_dssp             SSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTT--SSCC----HHHHHHHHHTC--TTEEEEEEECSCCSSS
T ss_pred             eCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccC--CCcC----HHHHHHHhhCC--CCCEEEEEEcCCCCCC
Confidence            87 6665543211 1111000 0001112444333332111  1134    57788777631  3678999999    77


Q ss_pred             CCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC--ccccccccC
Q 013235          265 GVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVTT  338 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pigav~~~  338 (447)
                      ++.|.+.+    +++|.++|++  +|+++|+||+|..+.... .     ......|++  +++|.++++  ...|+++++
T Consensus       191 nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~-~-----p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~  260 (427)
T 3i16_A          191 RRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTK-E-----PTDVGADLIAGSLIKNIGGGIAPTGGYLAGT  260 (427)
T ss_dssp             SCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSS-C-----GGGGTCSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred             CCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccC-C-----ccccCCeEEEecCcccCCCCCCceEEEEEEC
Confidence            88887766    9999999999  999999999996442111 1     111234777  578999874  346889999


Q ss_pred             HHHHHhhcCCcccccCC--CCh-HH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec-----ce
Q 013235          339 PEIAEVLTRRNYFNTFG--GNP-VC-TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-----GF  409 (447)
Q Consensus       339 ~~i~~~l~~~~~~~T~~--~np-~a-~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-----Gl  409 (447)
                      +++++.+........++  ..| +. +..++..|+.+  +...++..+...++.+.|+++    +.- -.++.     .+
T Consensus       261 ~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~-V~p~~~~~~~~~  333 (427)
T 3i16_A          261 KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFE-VMPKYDEKRSDI  333 (427)
T ss_dssp             HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCE-EESCTTSCCSSS
T ss_pred             HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCe-ecCCCCCCCccE
Confidence            99998876521111111  112 32 33334444332  345566777777777777665    221 12233     33


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~G  440 (447)
                      ++.|++.        +.+.+.++++.|....
T Consensus       334 i~~i~l~--------~~~~~~~f~~~l~~~~  356 (427)
T 3i16_A          334 IQSIKFN--------DKDKLIEFCKGIQTGS  356 (427)
T ss_dssp             CEEEECS--------SHHHHHHHHHHHHHTC
T ss_pred             EEEEEEC--------CHHHHHHHHHHHhhcC
Confidence            8888874        2345778888887753

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.56  E-value=5.6e-13  Score=139.10  Aligned_cols=232  Identities=13%  Similarity=0.045  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-------cCC----C-eEEEEcCCcccCchhhhhccCCCC
Q 013235          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-------TGC----N-DIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~-------t~~----~-~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      ...++.++|+++++.+.+.++|++||||||..|++.+|.+       .|.    + .|++.+. .|.....+....+.. 
T Consensus       149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~-~h~s~~~~~~~~g~g-  226 (515)
T 2jis_A          149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKE-CHYSIQKGAAFLGLG-  226 (515)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETT-SCTHHHHHHHHTTSC-
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCC-ccHHHHHHHHHcCCC-
Confidence            3456777788888655568999999999999999998743       131    2 4555544 455555444333210 


Q ss_pred             ccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                            ...+..++...    .+..|    .++|++.++..  ...++++|++...++..|.+.+    +++|.++|++|
T Consensus       227 ------~~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~  288 (515)
T 2jis_A          227 ------TDSVRVVKADE----RGKMV----PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRH  288 (515)
T ss_dssp             ------GGGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHH
T ss_pred             ------CCcEEEEecCC----CCcCC----HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHc
Confidence                  01233444321    12234    56677666531  1125788899888888888876    99999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCC-CCCEEEe--eccccCCccccccccCHH--HHHh-hc---CCc-c-------
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE--IAEV-LT---RRN-Y-------  350 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~--i~~~-l~---~~~-~-------  350 (447)
                      |+++++|++|+++.... ..+.....++ .+|++++  .|.+++++++|+++++++  +++. +.   ... .       
T Consensus       289 g~~l~vD~a~~~~~~~~-~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~  367 (515)
T 2jis_A          289 GLWLHVDAAWGGSVLLS-QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV  367 (515)
T ss_dssp             TCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred             CCeEEEehhhhhHHHhC-hhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence            99999999999876654 2222233455 7899987  799887778999998866  6553 11   100 0       


Q ss_pred             ---cccCC------CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013235          351 ---FNTFG------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       351 ---~~T~~------~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  394 (447)
                         ..++.      ...+++.++++++....-+++.++..++.++|.+.|+++
T Consensus       368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~  420 (515)
T 2jis_A          368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR  420 (515)
T ss_dssp             GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               01111      113444444444432111345667777788888877664

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.54  E-value=6.5e-14  Score=138.39  Aligned_cols=276  Identities=9%  Similarity=0.008  Sum_probs=158.0

Q ss_pred             CCHHHHHHHHHHHHhc---c---ccc-cccc--chHHHHHHHHHHHhCCCC-CceEEEcCCH-HHHHHHHHHHHHhhcCC
Q 013235          116 CHPYVVDSIVNQIKRI---Q---HST-VLYL--NHAIADFAEALASKMPGN-LKVVFFTNSG-TEANELAIMMARLYTGC  184 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~---~---~~~-~~~~--~~~~~elae~L~~~~~~~-~~~v~~~~sG-seA~e~Aik~ar~~t~~  184 (447)
                      .+|.|.+|+.+.++..   .   +.. .+++  .+...+++++|+++++.. .+.|+|++++ ++|+++++.......++
T Consensus        14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~   93 (360)
T 1w23_A           14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTI   93 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred             CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCc
Confidence            6799999999887542   0   000 0111  235678999999988654 3578899887 99999988754321112


Q ss_pred             CeEEEEcCCcccCchhhhhccCCCCccccccCCC-eEeecCCCCcCCCCCCChHHHHHHHHH-HHHccCCCCeEEEEEcc
Q 013235          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-VHHALNPDPYRGVFGADGEMYAKDVQD-LIDFGTSGHVAGFLSES  262 (447)
Q Consensus       185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~d~~~~~~~le~-~i~~~~~~~~aavi~Ep  262 (447)
                      .+.|....-.|.. ......            .| +..++.. +..+ + .|    .+++++ .+    ..++.+|++..
T Consensus        94 g~~vi~~~~~~~~-~~~~~~------------~g~~~~v~~~-~~~~-~-~d----~~~l~~~~i----~~~~k~v~~~~  149 (360)
T 1w23_A           94 GNYVLTGSWSEKA-LKEAKL------------LGETHIAAST-KANS-Y-QS----IPDFSEFQL----NENDAYLHITS  149 (360)
T ss_dssp             EEEEECSHHHHHH-HHHHHT------------TSEEEEEEEC-GGGT-S-CS----CCCGGGCCC----CTTEEEEEEES
T ss_pred             ccEEEecchhHHH-HHHHHH------------hCCeEEeecc-cccC-c-CC----ccchHhhcc----CCCCCEEEEeC
Confidence            2233322212211 111110            12 1222211 0001 1 12    233444 33    23678888888


Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHH
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPE  340 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~  340 (447)
                      .++++|.+.+         +++++||+++|+||+|+.+...-    ....+    |++++  +|.++. ..+|+++++++
T Consensus       150 ~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~~----~~~~~----di~~~s~sK~~~~-~G~G~~~~~~~  211 (360)
T 1w23_A          150 NNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRPL----KVNQF----GMIYAGAQKNLGP-SGVTVVIVKKD  211 (360)
T ss_dssp             EETTTTEECS---------SCCCCCSSCEEEECTTTTTSSCC----CGGGC----SEEEEETTTTTSC-TTCEEEEEEHH
T ss_pred             CCCCcceecc---------cccccCCceEEEechhhcCCCCc----CcccC----CEEEEEcccccCC-CCcEEEEEcHH
Confidence            8888998764         12238999999999997543221    12222    77765  499973 24899999999


Q ss_pred             HHHhhcCCc-----------ccccCC-CChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHhcC-Ceee
Q 013235          341 IAEVLTRRN-----------YFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYG-IIGD  403 (447)
Q Consensus       341 i~~~l~~~~-----------~~~T~~-~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~  403 (447)
                      +++.+....           ...+++ .|..+++++.++|+.++++    ++.++.+++.+++.+.|+++    + +...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~  287 (360)
T 1w23_A          212 LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYVG  287 (360)
T ss_dssp             HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSEE
T ss_pred             HHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCcccc
Confidence            877664421           112233 3566666777788876543    34566666667776666554    3 2121


Q ss_pred             E--e-ec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          404 V--R-GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       404 v--r-g~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .  . +. +.++++.+.        ......++.+.|.++||.+.+
T Consensus       288 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~~~~  325 (360)
T 1w23_A          288 HAEKGSRSLMNVTFNLR--------NEELNQQFLAKAKEQGFVGLN  325 (360)
T ss_dssp             SSCGGGBCSSEEEEECS--------SHHHHHHHHHHHHHTTEESCB
T ss_pred             cCCchhccCcEEEEEcC--------CCccHHHHHHHHHHCCeeeec
Confidence            1  2 12 457777762        222356788889999998864

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.54  E-value=3e-13  Score=139.01  Aligned_cols=265  Identities=14%  Similarity=0.003  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEcCCHH-HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeE
Q 013235          142 AIADFAEALASKMPGNLKVVFFTNSGT-EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v~~~~sGs-eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~  220 (447)
                      ...+++++++++++.+.+ ++|+++|+ .+|..++..++...+++.||+.+..| .....+....+.          .+.
T Consensus       134 ~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h-~s~~~~~~~~G~----------~~~  201 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASH-KSPIKAVSFVGM----------NMR  201 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCC-HHHHHHHHHTTC----------EEE
T ss_pred             HHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCc-HHHHHHHHHcCC----------Cce
Confidence            445688889998876545 89999999 57777887766543555677777744 443333322211          122


Q ss_pred             eecCCCCcCCCCCCChHHHHHHHHHHH-HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC
Q 013235          221 HALNPDPYRGVFGADGEMYAKDVQDLI-DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (447)
Q Consensus       221 ~~~~p~~~~~~~~~d~~~~~~~le~~i-~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG  299 (447)
                      .++.. +....+..|    .++|++.+ +.....++.+|++...+++.|.+.+    +++|.++|+++|+++++||++.+
T Consensus       202 ~v~~~-~~~~~~~~d----~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~  272 (456)
T 2z67_A          202 LVETV-LDGDRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAI  272 (456)
T ss_dssp             EECCE-EETTEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTT
T ss_pred             EEEEe-ccCCCCCcC----HHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchH
Confidence            22210 001112234    56777777 3210124555655544456787766    99999999999999999999876


Q ss_pred             ccccCCCcccccccCCCCCEEEe--eccccCCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh--
Q 013235          300 FARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD--  374 (447)
Q Consensus       300 fgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~--  374 (447)
                      +.. |......+.....+|++++  .|.+++++.+|++++ ++++++.+..... ....+++  ..++.+++..+.++  
T Consensus       273 ~~~-g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~-g~~~~~~--~~~~~aal~~l~~~~~  348 (456)
T 2z67_A          273 QNN-YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYP-GRASATP--VVNTLVSLLSMGSKNY  348 (456)
T ss_dssp             TCH-HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSC-SCBCSHH--HHHHHHHHHHHHHHHH
T ss_pred             HHH-HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCC-CCCCCCH--HHHHHHHHHHHHHHHH
Confidence            532 2000001111116798876  597777788999999 5778776643222 2222332  33344445444333  


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          375 -KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       375 -~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                       +..++..++.++|.++|+++..+.+.. -+... .++.+.+..+.    .    ..++.+.|.++|+
T Consensus       349 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~-v~~~~-~~v~~~~~~~~----~----~~~l~~~L~~~gi  406 (456)
T 2z67_A          349 LELVKNQKNSKKLLDELLNDLSKKTGGK-FLDVE-SPIASCISVNS----D----PVEIAAKLYNLRV  406 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCC-BCCCC-CSSEEEEECSS----C----HHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCE-ecCCC-CeEEEEEeccc----H----HHHHHHHHHHcCC
Confidence             456778888899999988874322211 11112 44555553211    0    3467888888886

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.52  E-value=4.6e-13  Score=138.70  Aligned_cols=302  Identities=14%  Similarity=0.060  Sum_probs=166.6

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhc---cccccc-cc-ch----HHHHHHHHHHHhCCCCCc---eEEEcCCHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRI---QHSTVL-YL-NH----AIADFAEALASKMPGNLK---VVFFTNSGT  168 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~---~~~~~~-~~-~~----~~~elae~L~~~~~~~~~---~v~~~~sGs  168 (447)
                      .|++.++..     ..+|.|.+|+.+.+...   ++...+ |. .+    ...++++++++.++.+.+   ..+..+||+
T Consensus        46 ~i~L~a~e~-----~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs  120 (483)
T 1rv3_A           46 GLELIASEN-----FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS  120 (483)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred             CeEEEcCCC-----CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence            356555432     35799999998877642   111111 11 12    233455888888865543   224667888


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC--eEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG--VHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g--~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      +||.++++..  ..++++|++.+..|.|...-....     ++......|  +..++++... ..+..|    .++|++.
T Consensus       121 ~an~~~~~al--l~pGD~Vl~~~~~~~~~~~~~~~~-----~~~~v~~~G~~~~~v~~~~~~-~~~~iD----~d~le~~  188 (483)
T 1rv3_A          121 PANFAVYTAL--VEPHGRIMGLDLPDGGHLTHGFMT-----DKKKISATSIFFESMAYKVNP-DTGYID----YDRLEEN  188 (483)
T ss_dssp             HHHHHHHHHH--TCTTCEEEEECGGGTCCGGGCCBC-----SSCBCSHHHHHSEEEEECBCT-TTCSBC----HHHHHHH
T ss_pred             HHHHHHHHHh--cCCCCEEEEecCccCcCcchhhhh-----cccCcccccceEEEEECcccc-CCCcCC----HHHHHHH
Confidence            9999888754  346688999988776553211100     000000011  3334332110 112234    6778887


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee--
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--  323 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s--  323 (447)
                      +...   ++.+|++ ...+.+ .+.+    +++|+++|+++|++||+||+|. |+-..|.+.+.+.    ..|+++++  
T Consensus       189 i~~~---~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~  255 (483)
T 1rv3_A          189 ARLF---HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTH  255 (483)
T ss_dssp             HHHH---CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESS
T ss_pred             Hhhc---CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCc
Confidence            7632   4457777 444444 4443    9999999999999999999985 3322231111111    35888654  


Q ss_pred             ccccCCccccccccCHH---------------HHHhhcCCcccccCCC-ChHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 013235          324 KGIGNGIPLGAVVTTPE---------------IAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVG  384 (447)
Q Consensus       324 K~lg~G~pigav~~~~~---------------i~~~l~~~~~~~T~~~-np~a~aaala~L~~i~~---~~l~~~~~~~g  384 (447)
                      |.++ |.+.|+++++++               +.+.+.........++ +...+++..++|+.+.+   +++.+++.++.
T Consensus       256 K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~  334 (483)
T 1rv3_A          256 KTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANC  334 (483)
T ss_dssp             GGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence            9985 567799988764               3333321111111233 23334444456776643   34667777888


Q ss_pred             HHHHHHHHHHHHhcCCeeeEeecc-eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          385 SYLKERLTALKDKYGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       385 ~~l~~~L~~l~~~~~~i~~vrg~G-l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++|.+.|.++  .+.++.  .|.+ .+..+.+....    -   ...++.+.|.+.||.+.
T Consensus       335 ~~l~~~L~~~--g~~~~~--~~~~~~~~~v~~~~~g----~---~~~~~~~~L~~~gI~v~  384 (483)
T 1rv3_A          335 RALSAALVEL--GYKIVT--GGSDNHLILVDLRSKG----T---DGGRAEKVLEACSIACN  384 (483)
T ss_dssp             HHHHHHHHHT--TCEEGG--GSCSSSEEEEEGGGGT----C---CHHHHHHHHHHTTEECE
T ss_pred             HHHHHHHHhc--CCEecc--CCCCCceEEEeccCCC----C---CHHHHHHHHHhCCcEEe
Confidence            8888888765  332221  1211 34455553211    0   13456777888999987

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.52  E-value=1.2e-13  Score=140.36  Aligned_cols=204  Identities=11%  Similarity=0.027  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC---CCC--ceEEEcCCHHHHHHHHHHHHHh-h-cCCCeEEE
Q 013235          118 PYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP---GNL--KVVFFTNSGTEANELAIMMARL-Y-TGCNDIIS  189 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~---~~~--~~v~~~~sGseA~e~Aik~ar~-~-t~~~~ii~  189 (447)
                      |.|.+|.++.++..  .+..| +.....+|.+.+++++-   ...  ....-+.+|+.|...++.+... + .+++.|++
T Consensus        65 ~~Vk~A~~~~~~~~--~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~i  142 (420)
T 4h51_A           65 RVVRKAEQLLLDMN--LDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYL  142 (420)
T ss_dssp             HHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEE
T ss_pred             HHHHHHHHHHhcCC--CCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEE
Confidence            77888876655442  11123 34455667776666531   111  2334578999999988876543 3 35678999


Q ss_pred             EcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (447)
Q Consensus       190 ~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~  269 (447)
                      .+++|-.+.......+...          +...++.+  ...++.|    .+.+.+.+....+ +...++..+-++++|.
T Consensus       143 p~P~w~~y~~i~~~aG~~~----------V~~~~~~~--~~~~~~d----~~~~~~~l~~~~~-~~~vll~~~p~NPtG~  205 (420)
T 4h51_A          143 SDPTWPNHYGVVKAAGWKN----------ICTYAYYD--PKTVSLN----FEGMKKDILAAPD-GSVFILHQCAHNPTGV  205 (420)
T ss_dssp             EESCCTHHHHHHHHTTCCC----------EEEEECEE--GGGTEEC----HHHHHHHHHHSCS-SCEEEEESSSCTTTCC
T ss_pred             ecCCchhHHHHHHHcCCeE----------EEeecccc--ccccCCC----HHHHHHHHhccCC-CcEEEEeCCCCCCCCC
Confidence            9999965544333332211          11111111  1112223    3444444544433 4456666666777776


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC--ccccc-ccCCCCCEE---Eeecccc-CCccccccccCHHH
Q 013235          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGFE-AHGVVPDIV---TMAKGIG-NGIPLGAVVTTPEI  341 (447)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~--~~~~~-~~gv~pDiv---t~sK~lg-~G~pigav~~~~~i  341 (447)
                      +. +++.+++|.++|+++++++|.||+|.||...+..  .+... ..+..+.++   +|||.++ .|+|+|++++..+.
T Consensus       206 ~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~  283 (420)
T 4h51_A          206 DP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKD  283 (420)
T ss_dssp             CC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSC
T ss_pred             CC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccC
Confidence            65 8999999999999999999999999999754311  11111 112223333   6899998 59999998875443

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.50  E-value=3.8e-13  Score=135.31  Aligned_cols=276  Identities=8%  Similarity=-0.035  Sum_probs=160.1

Q ss_pred             CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCC-CceEEE-cCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~-~~~v~~-~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      .+|+|.+|+.+...........++  .+...+++++|++.++.+ .++++| ++||++|++.+++...   ++. ++...
T Consensus        51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~~g-v~~v~  126 (398)
T 2fyf_A           51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---DKR-SLHLT  126 (398)
T ss_dssp             CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---SSC-EEEEE
T ss_pred             CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---CCC-eEEEe
Confidence            678999988763111111112222  235678999999998764 247888 9999999999998653   222 33336


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~  271 (447)
                      .++|+..........  .|     ...+..++.++.    +..+.     +    +    ..++.+|++...++++|.+.
T Consensus       127 ~~~~~~~~~~~~~~~--~~-----g~~~~~v~~~~g----~~~~~-----~----i----~~~~~~v~~~~~~nptG~~~  182 (398)
T 2fyf_A          127 YGEFSAKFASAVSKN--PF-----VGEPIIITSDPG----SAPEP-----Q----T----DPSVDVIAWAHNETSTGVAV  182 (398)
T ss_dssp             CSHHHHHHHHHHHHC--TT-----SCCCEEEECCTT----CCCCC-----C----C----CTTCSEEEEESEETTTTEEC
T ss_pred             CCHHHHHHHHHHHHh--CC-----CCceEEEecCCC----CCCCc-----c----c----cCCCCEEEEeCcCCCcceec
Confidence            677754322111110  00     012223332211    11110     0    1    12556777777788889887


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCC-
Q 013235          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRR-  348 (447)
Q Consensus       272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~-  348 (447)
                      +.    ++|.++   +|+++|+||+|+.+...-    ..+    .+|+++++  |.++.+-.+|++++++++++.+... 
T Consensus       183 ~~----~~i~~~---~~~~vivD~a~~~~~~~~----~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~  247 (398)
T 2fyf_A          183 AV----RRPEGS---DDALVVIDATSGAGGLPV----DIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA  247 (398)
T ss_dssp             CC----CCCTTC---C-CEEEEECTTTTTTSCC----CGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHH
T ss_pred             ch----HHhhhh---cCCeEEEEeccccCCccc----Ccc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhccc
Confidence            63    333333   899999999997543211    111    26888765  9998643489999999988766210 


Q ss_pred             -------c------------ccccC-CCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235          349 -------N------------YFNTF-GGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (447)
Q Consensus       349 -------~------------~~~T~-~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  404 (447)
                             .            ...++ +.|..+++++.++|+.+.++    ++.++.+++.+++.+.|+++    +.+.-+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~  323 (398)
T 2fyf_A          248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPF  323 (398)
T ss_dssp             HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEES
T ss_pred             ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceec
Confidence                   0            01233 34566677777888876543    34566667777777777654    212111


Q ss_pred             ---e-ec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          405 ---R-GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       405 ---r-g~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                         + +. +.++.+.+.+.        ....++.+.|.++||++++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~g  362 (398)
T 2fyf_A          324 VTDPGLRSQVVGTIDFVDD--------VDAGTVAKILRANGIVDTEP  362 (398)
T ss_dssp             CCSGGGBCSSEEEEEECTT--------SCHHHHHHHHHHTTCBCCSC
T ss_pred             cCChhhcCCcEEEEECCCC--------CCHHHHHHHHHHCCcEEecC
Confidence               1 12 34788887321        01457889999999998653

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.50  E-value=3.3e-13  Score=139.52  Aligned_cols=287  Identities=13%  Similarity=0.072  Sum_probs=150.5

Q ss_pred             CCHHHHHHHHHHHH-hccc--cccccc--chHHHHHH----HHHHHhCCCCCc---eEEEcCCHHHHHHHHHHHHHhhcC
Q 013235          116 CHPYVVDSIVNQIK-RIQH--STVLYL--NHAIADFA----EALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTG  183 (447)
Q Consensus       116 ~~p~v~~A~~~~l~-~~~~--~~~~~~--~~~~~ela----e~L~~~~~~~~~---~v~~~~sGseA~e~Aik~ar~~t~  183 (447)
                      .+|+|.+|+...+. ++.+  ...+|.  ++...++.    ++++++++...+   ..++++||++||.++++...  .+
T Consensus        66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--~p  143 (490)
T 2a7v_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--QP  143 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--CS
T ss_pred             CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--CC
Confidence            47999999988764 3322  122221  12222333    888898865543   34567799999999998542  35


Q ss_pred             CCeEEEEcCCcccCch-h------hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          184 CNDIISLRNAYHGNAA-G------TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       184 ~~~ii~~~~~yHG~~~-~------~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      +++|++.+..|.|... +      ...+++.          .+..++++... ..+..|    .++|++.+...   ++.
T Consensus       144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~----------~~~~~~~~vd~-~~~~iD----~d~le~~l~~~---~~k  205 (490)
T 2a7v_A          144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSI----------FFESMPYKLNP-KTGLID----YNQLALTARLF---RPR  205 (490)
T ss_dssp             CEECCC-----------------------------------------CCBCT-TTCSBC----HHHHHHHHHHH---CCS
T ss_pred             CCEecccCccccccccchhhhcchhHHHcCC----------eEEEEeccccc-ccCCcC----HHHHHHHHhhc---CCc
Confidence            6778877766543221 1      1111110          11111211000 012234    67788777543   234


Q ss_pred             EEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEE--eeccccCCccc
Q 013235          257 GFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPL  332 (447)
Q Consensus       257 avi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pi  332 (447)
                      +|++. |.++.   ..+    +++|+++|++||++||+|++|. |+...|.....++    ..|+++  ++|+++ |.+.
T Consensus       206 lIi~~~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~G  273 (490)
T 2a7v_A          206 LIIAGTSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARS  273 (490)
T ss_dssp             EEEECCSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSC
T ss_pred             EEEEcCCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccc
Confidence            55654 44432   222    8999999999999999999975 3322331111111    258875  679995 4456


Q ss_pred             cccccCHH---------------HHHhhcCCcccccCCCC-hHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 013235          333 GAVVTTPE---------------IAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       333 gav~~~~~---------------i~~~l~~~~~~~T~~~n-p~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~  393 (447)
                      |+++++++               +.+.+.......+.++. +..+++..++++.+.+   +++.+++.++.++|.+.|.+
T Consensus       274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~  353 (490)
T 2a7v_A          274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE  353 (490)
T ss_dssp             EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77887764               33444332223344443 3334444446665533   35678888899999999887


Q ss_pred             HHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          394 LKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       394 l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +  .+.++.  .+. ..++.+.+....       ....++.+.|.+.||.+..
T Consensus       354 ~--G~~v~~--~~t~t~lv~vdl~~~g-------~~~~~~~~~L~~~GI~v~~  395 (490)
T 2a7v_A          354 R--GYSLVS--GGTDNHLVLVDLRPKG-------LDGARAERVLELVSITANK  395 (490)
T ss_dssp             T--TCEEGG--GSCSSSEEEEECTTTT-------CCHHHHHHHHHHTTEECEE
T ss_pred             c--CcEEec--CCCCCeEEEEEeCCCC-------CCHHHHHHHHHhCCeEEec
Confidence            4  332221  111 245556553211       0134577788889999864

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.50  E-value=1.3e-12  Score=129.49  Aligned_cols=290  Identities=11%  Similarity=0.061  Sum_probs=165.7

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-------cccccc--chHHHHHHHHHHHhCCCCCc-e-EEEcCC
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-------STVLYL--NHAIADFAEALASKMPGNLK-V-VFFTNS  166 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-------~~~~~~--~~~~~elae~L~~~~~~~~~-~-v~~~~s  166 (447)
                      ++.|+|..+.     .. .+|+|.+|+.+.+.....       ....++  .+...++++++++.++.+.+ + +++++|
T Consensus         3 ~~~~l~~~~~-----~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g   76 (362)
T 2c0r_A            3 ERAYNFNAGP-----AA-LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG   76 (362)
T ss_dssp             CCCEECCSSS-----CC-CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred             cceeeccCCC-----CC-CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence            4566664432     22 689999999988754210       011222  23467889999998876542 4 577899


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (447)
Q Consensus       167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (447)
                      |++|+..+++...  .++++|++...++++... ......+           .+..++.+..  ..++.+.+  .++++ 
T Consensus        77 ~t~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~~~g-----------~~~~v~~~~~--~~~~~~~~--~~~~~-  138 (362)
T 2c0r_A           77 ASTQFAMIPMNFL--KEGQTANYVMTGSWASKALKEAKLIG-----------DTHVAASSEA--SNYMTLPK--LQEIQ-  138 (362)
T ss_dssp             HHHHHHHHHHHHC--CTTCEEEEEECSHHHHHHHHHHHHHS-----------CEEEEEECGG--GTTCSCCC--GGGCC-
T ss_pred             chHHHHHHHHhcC--CCCCeEEEEecCcHhHHHHHHHHHhC-----------CeEEEecccc--cccccCCC--HHHcc-
Confidence            9999999998543  345778877766655321 1111111           1222222100  00111000  11121 


Q ss_pred             HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--ee
Q 013235          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MA  323 (447)
Q Consensus       246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~s  323 (447)
                       +   . .++.+|++...++.+|.+..+   +++|      +|+++|+||+|. +|..   ....+.  .  |+++  ++
T Consensus       139 -i---~-~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~---~~~~~~--~--d~~~~s~~  196 (362)
T 2c0r_A          139 -L---Q-DNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR---PFDLNQ--F--GLVYAGAQ  196 (362)
T ss_dssp             -C---C-TTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS---CCCGGG--C--SEEEEETT
T ss_pred             -c---C-CCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC---ccchhH--C--cEEEEecc
Confidence             1   2 256777777667888886322   4444      899999999996 3311   111221  2  7764  67


Q ss_pred             cccc-CCccccccccCHHHHHhhcCCc------------ccccCCCChHHHHHHHHHHHHHhh----hhHHHHHHHHHHH
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSY  386 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l~~~~------------~~~T~~~np~a~aaala~L~~i~~----~~l~~~~~~~g~~  386 (447)
                      |.+| .|  +|++++++++++.+....            ....++.|+.+++++.++|+.+++    ++..++.+++.++
T Consensus       197 K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~  274 (362)
T 2c0r_A          197 KNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASL  274 (362)
T ss_dssp             TTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9997 35  799999998876654310            012345677888888899988765    3455666666666


Q ss_pred             HHHHHHHHHHhc-CCeee--EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          387 LKERLTALKDKY-GIIGD--VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       387 l~~~L~~l~~~~-~~i~~--vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +.+.|+++- .+ .....  .++ +.++.+.+        |......++.+.|.++||.+.+
T Consensus       275 l~~~L~~~~-~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~L~~~gi~~~~  326 (362)
T 2c0r_A          275 IYDAIDQSG-GFYRGCVDVDSRS-DMNITFRL--------ASEELEKEFVKASEQEGFVGLK  326 (362)
T ss_dssp             HHHHHHTST-TSSEESSCGGGBC-SSEEEEEC--------SCHHHHHHHHHHHHHTTEESCB
T ss_pred             HHHHHHHcC-CccccCCChHHcC-CcEEEEEc--------CCcchHHHHHHHHHHCCCeecc
Confidence            666665541 01 11110  112 33445554        2223456788899999998764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.47  E-value=5.3e-14  Score=141.63  Aligned_cols=240  Identities=12%  Similarity=0.075  Sum_probs=139.4

Q ss_pred             HHHHHHHHHhCC------CCCceEEEcCCHHHHHHHHHHHHHhhcCCC----eEEEEcCCcccCchhhhhccCCCCcccc
Q 013235          144 ADFAEALASKMP------GNLKVVFFTNSGTEANELAIMMARLYTGCN----DIISLRNAYHGNAAGTMGATAQSNWKFN  213 (447)
Q Consensus       144 ~elae~L~~~~~------~~~~~v~~~~sGseA~e~Aik~ar~~t~~~----~ii~~~~~yHG~~~~~~~~t~~~~~~~~  213 (447)
                      .+|.+.+++++.      ...++|++++++++|+..+++....  +++    .|++.+++|.+....+.... ..     
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g-~~-----  142 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVR-SG-----  142 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTC-BT-----
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcC-Ce-----
Confidence            667777777653      1225899999999999999986543  445    89999999986554433221 11     


Q ss_pred             ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC--CEE
Q 013235          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLC  291 (447)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g--~ll  291 (447)
                           +..++.          |    .+.++      .+ ++.++++...++++|.+..      +|.+  ++|+  +++
T Consensus       143 -----~~~~~~----------d----~~~l~------~~-~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~i  188 (391)
T 3bwn_A          143 -----MYKWEG----------D----AWGFD------KK-GPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKV  188 (391)
T ss_dssp             -----TEEEEE----------E----STTCC------CC-SCEEEEEESSCTTTCCCCC------CCC-------CCCEE
T ss_pred             -----EEEecC----------C----HHHcC------CC-CCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEE
Confidence                 111110          0    01111      02 3445544444566777763      2322  2266  999


Q ss_pred             EEeccccCccccCCCccccc-ccCCCCCEEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHH
Q 013235          292 IADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (447)
Q Consensus       292 I~DEv~tGfgr~G~~~~~~~-~~gv~pDivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L  368 (447)
                      |+||+|.. +    +...+. ..+..--+-+|||.+| .|+++|++++ ++++++.+.......+++.+++++.++.++|
T Consensus       189 i~De~y~~-~----~~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l  263 (391)
T 3bwn_A          189 IHDFAYYW-P----HYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL  263 (391)
T ss_dssp             EEECTTCS-T----TTSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEeCCCCC-C----CCCccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            99999962 2    111111 1222222336899998 7999999997 8999888765433446778899999988888


Q ss_pred             HHHhh--------hhH----HHHHHHHHHHHHHHHHHHHHhcCCee------e--------EeecceeEEEEEeeCCCCC
Q 013235          369 KVIQK--------DKL----QNNAHVVGSYLKERLTALKDKYGIIG------D--------VRGRGFLLGVEFVTDRQLK  422 (447)
Q Consensus       369 ~~i~~--------~~l----~~~~~~~g~~l~~~L~~l~~~~~~i~------~--------vrg~Gl~~giel~~~~~~~  422 (447)
                      +.-.+        ++.    .+.++++.+++.+.|++    ++.+.      .        ++..|+++++++.+.    
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----  335 (391)
T 3bwn_A          264 NVLKETCKSESESENFFKYGREMMKNRWEKLREVVKE----SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----  335 (391)
T ss_dssp             HHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHT----CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----
T ss_pred             hCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccccCCccccccccccCCCcceEEEecCCcH----
Confidence            75321        223    33344444444444443    32111      0        123466788887421    


Q ss_pred             CCCHHHHHHHHHHHHhCCceeec
Q 013235          423 TPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       423 ~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                             ..+.+.|.++||++.+
T Consensus       336 -------~~~~~~l~~~gV~v~p  351 (391)
T 3bwn_A          336 -------TDLVSELRRHKVMSRA  351 (391)
T ss_dssp             -------CCHHHHHHHTTEECEE
T ss_pred             -------HHHHHHHHHCCEEEcc
Confidence                   1355667789999875

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.47  E-value=8e-12  Score=129.96  Aligned_cols=292  Identities=15%  Similarity=0.055  Sum_probs=162.0

Q ss_pred             CCCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCC--Cc---eEEEcCCHHHHHHHHHHHHHhh------
Q 013235          115 HCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN--LK---VVFFTNSGTEANELAIMMARLY------  181 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~--~~---~v~~~~sGseA~e~Aik~ar~~------  181 (447)
                      +.+|.+.+++.+.++........++  .....++++.|+++++.+  .+   ...+++||+|||..++..++..      
T Consensus        67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~  146 (502)
T 3hbx_A           67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK  146 (502)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence            3579999998887765322111222  233346677788887544  22   3346999999999999877542      


Q ss_pred             -cC----CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          182 -TG----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       182 -t~----~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                       .|    +..|++.+.++.. ...+....+.          .+..++...   ..+..|    .++|++.+..    ++.
T Consensus       147 ~~G~~~~~~~vi~~~~~h~s-~~~~~~~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~~----~t~  204 (502)
T 3hbx_A          147 AEGKPVDKPNIVTGANVQVC-WEKFARYFEV----------ELKEVKLSE---GYYVMD----PQQAVDMVDE----NTI  204 (502)
T ss_dssp             HTTCCCSCCEEEEETTCCHH-HHHHHHHTTC----------EEEEECCBT---TBCSCC----HHHHHHHCCT----TEE
T ss_pred             hcCCCCCCcEEEEcCCchHH-HHHHHHHcCc----------eeEEEecCC---CcCcCC----HHHHHHHHhh----CCE
Confidence             02    1267776666543 2222222211          233333211   112234    5677776642    456


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHh------CCEEEEeccccCccc---cCCCcccccccCCCCCEEEee--cc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KG  325 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tGfgr---~G~~~~~~~~~gv~pDivt~s--K~  325 (447)
                      +|++.-..+++|.+.+    +++|.++|+++      |+++++|++|.|+..   .+...|.+..  ...|+++++  |.
T Consensus       205 ~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~  278 (502)
T 3hbx_A          205 CVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKY  278 (502)
T ss_dssp             EEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTT
T ss_pred             EEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccc
Confidence            6666655556677766    99999999999      999999999987631   2211111111  134766543  76


Q ss_pred             ccCCccccccccC-HHHH-HhhcCC-cc------ccc--CCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 013235          326 IGNGIPLGAVVTT-PEIA-EVLTRR-NY------FNT--FGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL  391 (447)
Q Consensus       326 lg~G~pigav~~~-~~i~-~~l~~~-~~------~~T--~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L  391 (447)
                      +.++..+|+++.+ ++.+ +.+... .+      ..+  ++.+....++..++|+.+..+   +..++..++.++|.+.|
T Consensus       279 l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L  358 (502)
T 3hbx_A          279 GLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL  358 (502)
T ss_dssp             TCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666778877765 4433 222110 00      011  222222334444555555444   34566666777777777


Q ss_pred             HHHHHhcCCeeeEee--cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          392 TALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       392 ~~l~~~~~~i~~vrg--~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++    +.+.-+..  ...++.+.+..+..      ....++.+.|.++|+++.
T Consensus       359 ~~~----~~~~~~~~~~~~~~v~f~~~~~~~------~~~~~l~~~L~~~Gi~v~  403 (502)
T 3hbx_A          359 EKT----ERFNIVSKDEGVPLVAFSLKDSSC------HTEFEISDMLRRYGWIVP  403 (502)
T ss_dssp             HTT----TCEEECSCSSSSSEEEEEESSCSS------CCHHHHHHHHHTTTCBCC
T ss_pred             HhC----CCEEEEeCCCCceEEEEEecCCCc------CCHHHHHHHHHhCCcEEe
Confidence            654    32222221  34566677643210      013478899999999874

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.42  E-value=3.1e-11  Score=125.78  Aligned_cols=278  Identities=13%  Similarity=0.017  Sum_probs=150.7

Q ss_pred             HHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhhc-------C----CCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235          145 DFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT-------G----CNDIISLRNAYHGNAAGTMGATAQSNWK  211 (447)
Q Consensus       145 elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~t-------~----~~~ii~~~~~yHG~~~~~~~~t~~~~~~  211 (447)
                      ++++.++++++.+  ...++|++|||+||..|+..++...       |    .+.+|......|-....+....+...  
T Consensus       139 ~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~--  216 (511)
T 3vp6_A          139 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT--  216 (511)
T ss_dssp             HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG--
T ss_pred             HHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCC--
Confidence            3445556655433  3578999999999999999887531       2    23344444445544444433332100  


Q ss_pred             ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                           ..+..++...    .+..|    .++|++.|...  ....+.+|++....++.|.+.+    +++|.++|++||+
T Consensus       217 -----~~~~~v~~d~----~~~~d----~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~  279 (511)
T 3vp6_A          217 -----DNVILIKCNE----RGKII----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNL  279 (511)
T ss_dssp             -----GGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTC
T ss_pred             -----CcEEEeecCC----CCccC----HHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCC
Confidence                 0133333221    12234    56777777532  1123778888888888888866    9999999999999


Q ss_pred             EEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCH-HHHHhh-cCC-cccc-----------
Q 013235          290 LCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP-EIAEVL-TRR-NYFN-----------  352 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~-~i~~~l-~~~-~~~~-----------  352 (447)
                      ++++|++|.|...... -+.....|+ ..|+++++  |.++..+..|+++.+. ++.... ... .+..           
T Consensus       280 ~lhvD~a~~~~~~~~~-~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~  358 (511)
T 3vp6_A          280 WLHVDAAWGGGLLMSR-KHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYD  358 (511)
T ss_dssp             EEEEEETTGGGGGGCT-TTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGC
T ss_pred             EEEEEccchhhHhhCh-hhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccC
Confidence            9999999976433221 111122233 46888754  8887655667777654 444432 111 1110           


Q ss_pred             ----cC-CCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCC
Q 013235          353 ----TF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP  424 (447)
Q Consensus       353 ----T~-~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p  424 (447)
                          +. .+.+.......++|+.+..   +++.++..++.+++++.|+++ ..+.++..-.....++.+.+........+
T Consensus       359 ~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~-pg~~l~~~~~p~~~~v~f~~~p~~~~~~~  437 (511)
T 3vp6_A          359 TGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVP  437 (511)
T ss_dssp             CGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-TTEEESSSSCCSSSCEEEEECCGGGSSCC
T ss_pred             ccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccccccc
Confidence                11 1112223333444554433   345677777788888877654 12221211012344445554322110001


Q ss_pred             -CH-------HHHHHHHHHHHhCCcee
Q 013235          425 -AK-------AETLYIMDKMKGICALF  443 (447)
Q Consensus       425 -~~-------~~~~~~~~~l~~~Gvlv  443 (447)
                       ..       ....++.+.|+++|+++
T Consensus       438 ~~~~~~~~l~~~~~~l~~~L~~~G~~~  464 (511)
T 3vp6_A          438 DSPQRREKLHKVAPKIKALMMESGTTM  464 (511)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCEE
Confidence             10       12346888999999654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.38  E-value=3.8e-13  Score=137.09  Aligned_cols=286  Identities=12%  Similarity=-0.020  Sum_probs=161.4

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch--H---HHHHHHHHHHhCC------CCCceEEEcC
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH--A---IADFAEALASKMP------GNLKVVFFTN  165 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~--~---~~elae~L~~~~~------~~~~~v~~~~  165 (447)
                      ..+..|||..|...  ++ .++.+.+++.+.+.........|...  .   ..+|.+.|++++.      .+.++|++++
T Consensus        54 ~~~~~i~l~~g~~~--~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~  130 (427)
T 2hox_A           54 IQGCSADVASGDGL--FL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV  130 (427)
T ss_dssp             CTTCCEECCSCCCG--GG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred             CCCceEEecCcCCC--CC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence            34567888776652  33 34667777776653211111113322  2   4566666666552      3457899999


Q ss_pred             CHHHHHHHHHHHHHh------hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHH
Q 013235          166 SGTEANELAIMMARL------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (447)
Q Consensus       166 sGseA~e~Aik~ar~------~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (447)
                      ++++|+..+++....      ..+++.|++..++|.+........+. ..            +.        |..|    
T Consensus       131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~-~~------------~~--------~~~d----  185 (427)
T 2hox_A          131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK-KG------------YV--------WAGN----  185 (427)
T ss_dssp             HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB-TT------------EE--------EEEE----
T ss_pred             CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCC-ee------------ee--------ecCC----
Confidence            999999999986510      22457889999999765544433221 10            00        1112    


Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCE
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI  319 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDi  319 (447)
                      .++|++.+.   + ++.++++...++++|.+.+  +.+       +  ++..|.||++-+  ..- .+.... .  ..+|
T Consensus       186 ~~~l~~~~~---~-~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~--~~~-s~~~~~-~--~~~i  244 (427)
T 2hox_A          186 AANYVNVSN---P-EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW--PHY-TPIKYK-A--DEDI  244 (427)
T ss_dssp             GGGGTTCSC---G-GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS--TTT-SCCCSC-B--CCSE
T ss_pred             HHHHHHhhc---C-CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC--CCC-CccccC-C--CceE
Confidence            233443332   1 3444544444566777664  332       2  566788887732  100 111111 1  2345


Q ss_pred             E--Eeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---------hhHH----HHHHH
Q 013235          320 V--TMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---------DKLQ----NNAHV  382 (447)
Q Consensus       320 v--t~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---------~~l~----~~~~~  382 (447)
                      +  +|||.++ .|+++|++++ ++++++.+.......+++.+++++.++.+.|+...+         +++.    +.+++
T Consensus       245 ~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~  324 (427)
T 2hox_A          245 LLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE  324 (427)
T ss_dssp             EEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHH
T ss_pred             EEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHH
Confidence            5  6899998 7999999999 589988886544445577888888888888864321         2222    33333


Q ss_pred             HHHHHHHHHHHHHHhcCCee---------------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          383 VGSYLKERLTALKDKYGIIG---------------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       383 ~g~~l~~~L~~l~~~~~~i~---------------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ..++|.+.|    ++++.+.               .....|+++++++..+          ..++++.|+ ++||++.+
T Consensus       325 ~~~~l~~~L----~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~p  389 (427)
T 2hox_A          325 RWVNITALL----DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQN  389 (427)
T ss_dssp             HHHHHHHHH----TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEE
T ss_pred             HHHHHHHHH----HhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcC
Confidence            333443333    3332111               1222378888888421          134666765 78999875

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.32  E-value=3.5e-10  Score=116.85  Aligned_cols=251  Identities=11%  Similarity=0.018  Sum_probs=137.5

Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhc-------C---------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeec
Q 013235          160 VVFFTNSGTEANELAIMMARLYT-------G---------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHAL  223 (447)
Q Consensus       160 ~v~~~~sGseA~e~Aik~ar~~t-------~---------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~  223 (447)
                      ..+|++|||+||..|+..+|...       +         ...+|+.....|-....+..+.+.          .+..++
T Consensus       147 ~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~----------~~~~v~  216 (481)
T 4e1o_A          147 GGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV----------KMKFLP  216 (481)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTC----------EEEEEC
T ss_pred             ceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCC----------ceEEEE
Confidence            56899999999999999997541       1         233444455555554444333221          233333


Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc
Q 013235          224 NPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA  301 (447)
Q Consensus       224 ~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg  301 (447)
                      ...    .+..|    .++|++.|+...  ...+.+|++.-...+.|.+.+    +++|.++|++||+++++|+++.++.
T Consensus       217 ~~~----~~~~d----~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~  284 (481)
T 4e1o_A          217 VDD----NFSLR----GEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTA  284 (481)
T ss_dssp             CCT----TSCCC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGG
T ss_pred             cCC----CCcCC----HHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHH
Confidence            211    12235    566777765321  112555666655666787766    9999999999999999999997653


Q ss_pred             ccCCCcccccccCC-CCCEEEe--eccccCCccccccccCHH-HH-HhhcCCc-ccc-------------cC-CCChHHH
Q 013235          302 RTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-IA-EVLTRRN-YFN-------------TF-GGNPVCT  361 (447)
Q Consensus       302 r~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~-i~-~~l~~~~-~~~-------------T~-~~np~a~  361 (447)
                      ..+. .+.....|+ ..|.+++  .|.++.-+..|+++.+++ .. +.+.... +..             +. .+.+...
T Consensus       285 ~~~~-~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~  363 (481)
T 4e1o_A          285 FLCP-EFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRS  363 (481)
T ss_dssp             GGSG-GGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTH
T ss_pred             HhCh-hhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccH
Confidence            3331 111111243 4588876  488876555666666543 32 2221110 100             01 1111122


Q ss_pred             HHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh
Q 013235          362 AAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG  438 (447)
Q Consensus       362 aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~  438 (447)
                      ....++|+.+..   +++.++..++.+++.+.|+++. .+.++.  .....++.+.+..       ......++.+.|.+
T Consensus       364 l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~--~~~~~~v~f~~~~-------~~~~~~~l~~~L~~  433 (481)
T 4e1o_A          364 VKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDP-SFEIPA--KRHLGLVVFRLKG-------PNSLTENVLKEIAK  433 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TEECCS--CCCSSEEEEEESS-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEec--CCceeEEEEEeCC-------chHHHHHHHHHHHh
Confidence            223334444333   3455667777788877776541 222221  1223445555521       22345678899999


Q ss_pred             CCcee
Q 013235          439 ICALF  443 (447)
Q Consensus       439 ~Gvlv  443 (447)
                      +|+++
T Consensus       434 ~g~~~  438 (481)
T 4e1o_A          434 AGRLF  438 (481)
T ss_dssp             HCSSB
T ss_pred             CCeEE
Confidence            88543

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.30  E-value=2.5e-10  Score=117.79  Aligned_cols=265  Identities=9%  Similarity=-0.029  Sum_probs=143.0

Q ss_pred             HHHHHHHHhCCCCC---------ceEEEcCCHHHHHHHHHHHHHhhc-------C---------CCeEEEEcCCcccCch
Q 013235          145 DFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT-------G---------CNDIISLRNAYHGNAA  199 (447)
Q Consensus       145 elae~L~~~~~~~~---------~~v~~~~sGseA~e~Aik~ar~~t-------~---------~~~ii~~~~~yHG~~~  199 (447)
                      ++.+.+++.++.+.         ...+|++|||+||..|+..+|...       +         .+.+|+.....|-...
T Consensus       117 ~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~  196 (475)
T 3k40_A          117 VMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVE  196 (475)
T ss_dssp             HHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHH
T ss_pred             HHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHH
Confidence            34455666664432         257899999999999999997542       1         1234444555554444


Q ss_pred             hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChH
Q 013235          200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       200 ~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      .+....+.          .+..++.  ...  + .|    .++|++.|....  ...+.+|++.-..++.|.+.+    +
T Consensus       197 ~~~~~~g~----------~~~~v~~--d~~--~-~d----~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l  253 (475)
T 3k40_A          197 RAGLLGGV----------KLRSVQS--ENH--R-MR----GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----L  253 (475)
T ss_dssp             HHHHHHTC----------EEEEECC--BTT--B-CC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----H
T ss_pred             HHHHHcCC----------ceEEEEC--CCC--C-cC----HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----H
Confidence            44333221          1233332  111  2 34    567777775421  112455555545556777766    9


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCHH-H-HHhhcCC-ccc
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE-I-AEVLTRR-NYF  351 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~~-i-~~~l~~~-~~~  351 (447)
                      ++|.++|++||+++++|++|.+....+. .+.....++ ..|.++++  |.+++.+..|+++.+++ . .+.+... .+.
T Consensus       254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~-~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl  332 (475)
T 3k40_A          254 DECGPVGNKHNLWIHVDAAYAGSAFICP-EYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL  332 (475)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGGGGSG-GGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred             HHHHHHHHHhCCeEEEeHHhHHHHHhCH-hhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcccc
Confidence            9999999999999999999976422221 111111233 45888764  88876556677666543 2 1222110 000


Q ss_pred             -------------ccC-CCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235          352 -------------NTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       352 -------------~T~-~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                                   .+. .+-+.......++|+.+..   +++.++..++.+++.++|+++ ..+.++..  ....++.+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~g~~l~~~--~~~~iv~f~  409 (475)
T 3k40_A          333 KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD-SRFELAAE--INMGLVCFR  409 (475)
T ss_dssp             ----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTEEESSC--CBTTEEEEE
T ss_pred             CCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEecC--CceEEEEEE
Confidence                         011 1212223333444554433   345667777888888888765 12222221  223445555


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          415 FVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      +..       ......++.+.|.++|.++
T Consensus       410 ~~~-------~~~~~~~l~~~L~~~g~~~  431 (475)
T 3k40_A          410 LKG-------SNERNEALLKRINGRGHIH  431 (475)
T ss_dssp             ESS-------CHHHHHHHHHHHHHHTSCB
T ss_pred             eCC-------chHHHHHHHHHHHhCCcEE
Confidence            521       2234578889999988754

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.29  E-value=9.4e-10  Score=113.60  Aligned_cols=262  Identities=10%  Similarity=0.007  Sum_probs=141.5

Q ss_pred             HHHHHHHHhCCCCC---------ceEEEcCCHHHHHHHHHHHHHhh--c------CC-------Ce--EEEEcCCcccCc
Q 013235          145 DFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLY--T------GC-------ND--IISLRNAYHGNA  198 (447)
Q Consensus       145 elae~L~~~~~~~~---------~~v~~~~sGseA~e~Aik~ar~~--t------~~-------~~--ii~~~~~yHG~~  198 (447)
                      ++++.++++++.+.         ..++|++||||||..|+..+|..  .      |.       .+  |++.+.+|+. .
T Consensus       117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s-~  195 (486)
T 1js3_A          117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS-V  195 (486)
T ss_dssp             HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH-H
T ss_pred             HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH-H
Confidence            45556677765432         35789999999999999888642  1      21       24  4555555543 2


Q ss_pred             hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-CC-CeEEEEEccccCCCceeeCCCCh
Q 013235          199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-SG-HVAGFLSESIQGVGGIIELAPGY  276 (447)
Q Consensus       199 ~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~~-~~aavi~Epi~~~gG~~~~~~~~  276 (447)
                      ..+....+.          .+..++..    ..+..|    .++|++.|.... .+ .+.+|++.-..++.|.+.+    
T Consensus       196 ~~~~~~~G~----------~v~~v~~d----~~~~~d----~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~----  253 (486)
T 1js3_A          196 ERAGLIGGV----------KLKAIPSD----GKFAMR----ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----  253 (486)
T ss_dssp             HHHHHHHTC----------EEEEECCC----TTSCCC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred             HHHHHhCCC----------ceEEeecC----CCCCCC----HHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----
Confidence            222222211          23334321    122245    567777775321 11 2335555444456677765    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEe--eccccCCccccccccCHH-H-HHhhcCCc-c
Q 013235          277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-I-AEVLTRRN-Y  350 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~-i-~~~l~~~~-~  350 (447)
                      +++|.++|++||+++++|++|.++......+- ....++ ..|.+++  .|.++..+.+|+++.+++ . .+.+.... +
T Consensus       254 l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~-~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~y  332 (486)
T 1js3_A          254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFR-HLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY  332 (486)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTG-GGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-----
T ss_pred             HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHH-HHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchh
Confidence            99999999999999999999976533221110 001122 3588875  498876678898888644 2 34432100 0


Q ss_pred             c-c----------------cC--CCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecc
Q 013235          351 F-N----------------TF--GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (447)
Q Consensus       351 ~-~----------------T~--~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G  408 (447)
                      . .                ..  ....+++.++   |+.+..+   ++.++..++.+++.+.|+++ ..+.++.  ...+
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~a---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~--~~~~  406 (486)
T 1js3_A          333 LKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFV---FRMYGVKGLQAYIRKHVQLSHEFEAFVLQD-PRFEVCA--EVTL  406 (486)
T ss_dssp             -------CCSCCCGGGSSSCSCCCCTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTEEECS--CCCS
T ss_pred             hCCCcccccCCCCccccCCCCCCchhHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEeC--CCce
Confidence            0 0                00  1123344444   4433333   34566666777777777663 1121111  1234


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      .++.+.+..       ......++.+.|.++|+++
T Consensus       407 ~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~  434 (486)
T 1js3_A          407 GLVCFRLKG-------SDGLNEALLERINSARKIH  434 (486)
T ss_dssp             SEEEEEESS-------CHHHHHHHHHHHHHHTSCB
T ss_pred             eEEEEEecC-------hHHHHHHHHHHHHhcCCEE
Confidence            455555421       1223467888898888653

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.23  E-value=3.4e-10  Score=115.33  Aligned_cols=279  Identities=13%  Similarity=0.061  Sum_probs=148.0

Q ss_pred             CCCCHHHHHHHHHHHHhcccccc------cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235          114 GHCHPYVVDSIVNQIKRIQHSTV------LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI  187 (447)
Q Consensus       114 Gh~~p~v~~A~~~~l~~~~~~~~------~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~i  187 (447)
                      +|..|++++++.++.+.+.+.+.      ....+...++.++++++++.+.+++.++++++.++++++..++ ..++++|
T Consensus        75 ~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~V  153 (438)
T 1wyu_A           75 SHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGV  153 (438)
T ss_dssp             CCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEE
T ss_pred             CCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEE
Confidence            45567766666422222211111      1123456789999999886554556789999955555544333 3467888


Q ss_pred             EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCC
Q 013235          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG  267 (447)
Q Consensus       188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~g  267 (447)
                      |+.+.+|+...........         ..|+..+..|..   .+..|.+       + +.   + ++++|++... +.+
T Consensus       154 iv~~~~h~s~~~~~~~~a~---------~~G~~v~~v~~~---~~~~d~~-------~-i~---~-~t~~v~i~~p-n~t  208 (438)
T 1wyu_A          154 LVSQGVHPEYRAVLRAYLE---------AVGAKLLTLPLE---GGRTPLP-------E-VG---E-EVGAVVVQNP-NFL  208 (438)
T ss_dssp             EEETTSCHHHHHHHHHHHH---------HTTCEEEEECCB---TTBCCCC-------C-CC---T-TEEEEEEESS-CTT
T ss_pred             EEcCccCHhHHHHHHHHHH---------HCCCEEEEEcCc---CCccCHH-------H-hC---C-CeEEEEEECC-CCC
Confidence            8887776543322111000         012222222210   1112211       1 21   2 5667666654 778


Q ss_pred             ceeeCCCChHHHHHHHHHHhCCEEEEe--ccccCccccCCCcccccccCCCCCEEEee-cccc-----CCccccccccCH
Q 013235          268 GIIELAPGYLPAVYKSIKKAGGLCIAD--EVQAGFARTGSHFWGFEAHGVVPDIVTMA-KGIG-----NGIPLGAVVTTP  339 (447)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~tGfgr~G~~~~~~~~~gv~pDivt~s-K~lg-----~G~pigav~~~~  339 (447)
                      |.+.+    +++|.++|+++|+++|+|  +..  +|... .   ...+  .+|+++++ |.++     +|..+|++++++
T Consensus       209 G~~~~----l~~i~~la~~~g~~vivd~d~~a--~g~~~-~---~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~  276 (438)
T 1wyu_A          209 GALED----LGPFAEAAHGAGALFVAVADPLS--LGVLK-P---PGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKK  276 (438)
T ss_dssp             SBCCC----HHHHHHHHHHTTCEEEEECCTTG--GGTBC-C---HHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECG
T ss_pred             eEEec----HHHHHHHHHHcCCEEEEEechhh--ccCcC-C---CccC--CCCEEEECCcccCCCccCCCCCeeEEEEcH
Confidence            88775    999999999999999955  332  32211 0   1122  36999874 7543     345789999999


Q ss_pred             HHHHhhcCCcc--------------------------cccCCC---ChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHH
Q 013235          340 EIAEVLTRRNY--------------------------FNTFGG---NPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYL  387 (447)
Q Consensus       340 ~i~~~l~~~~~--------------------------~~T~~~---np~a~aaala~L~~i~~~---~l~~~~~~~g~~l  387 (447)
                      ++++.+....+                          ..|++-   +.++..++...|+.+.++   ++.++.+++.+++
T Consensus       277 ~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l  356 (438)
T 1wyu_A          277 AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKL  356 (438)
T ss_dssp             GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            88776532210                          122222   223222222235544433   3455566666677


Q ss_pred             HHHHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          388 KERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      .++|+++    +.+ .+.+. ..+..+.+..+.        ...++.+.|.++||.+
T Consensus       357 ~~~L~~~----~g~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~gi~v  400 (438)
T 1wyu_A          357 HALLLEV----PGV-RPFTPKPFFNEFALALPK--------DPEAVRRALAERGFHG  400 (438)
T ss_dssp             HHHHTTS----TTC-EECSCSSBCSEEEEECSS--------CHHHHHHHHHHTTCCC
T ss_pred             HHHHhcC----CCe-EECCCCCeEEEEEEeCCC--------CHHHHHHHHHHCCcee
Confidence            6666553    111 22222 233323332110        1467889999999998

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.12  E-value=1.9e-09  Score=117.21  Aligned_cols=228  Identities=12%  Similarity=0.082  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeE
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~  220 (447)
                      ....++.+.+++.++.+ +.++++|++++||.+++....  .+++.|++.+++|+..... +..++            ..
T Consensus       205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~--~~GD~Vlv~~~~h~s~~~~-~~~~G------------~~  268 (755)
T 2vyc_A          205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM--TDNDVVVVDRNCHKSIEQG-LMLTG------------AK  268 (755)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHH-HHHHC------------CE
T ss_pred             cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc--CCCCEEEECCCchHHHHHH-HHHcC------------CE
Confidence            45567777788777543 456667777799999998653  2567888888887654433 22222            11


Q ss_pred             eecCCCCcCCCCC----C-----ChHHHHHHHHHHHHccCC------CC-eEEEEEccccCCCceeeCCCChHHHHHHHH
Q 013235          221 HALNPDPYRGVFG----A-----DGEMYAKDVQDLIDFGTS------GH-VAGFLSESIQGVGGIIELAPGYLPAVYKSI  284 (447)
Q Consensus       221 ~~~~p~~~~~~~~----~-----d~~~~~~~le~~i~~~~~------~~-~aavi~Epi~~~gG~~~~~~~~l~~l~~l~  284 (447)
                      .+..+... ..|+    .     |    .++|++.+.....      .+ .+.++++|.  ..|.+.+    +++|.++|
T Consensus       269 ~v~v~~~~-~~~g~~g~i~~~~~d----~e~le~~i~~~~~~k~~~~~~~klvil~~pn--~~G~v~d----l~~I~~ia  337 (755)
T 2vyc_A          269 PVYMVPSR-NRYGIIGPIYPQEMQ----PETLQKKISESPLTKDKAGQKPSYCVVTNCT--YDGVCYN----AKEAQDLL  337 (755)
T ss_dssp             EEEECCCB-CTTSCBCCCCGGGGS----HHHHHHHHHHCTTTGGGTTCCCSCEEEESSC--TTSEEEC----HHHHHHHH
T ss_pred             EEEEeCCC-CccccccccCcCCCC----HHHHHHHHHhCccccccccCCCeEEEEECCC--CCceecC----HHHHHHHH
Confidence            11111111 0111    1     3    5677777754211      01 256667763  4688876    99999999


Q ss_pred             HHhCCEEEEeccccCccccCCCcccccc-cCCCCCE------E--EeeccccCCcc-ccccccCHH---H-HHhhcCC-c
Q 013235          285 KKAGGLCIADEVQAGFARTGSHFWGFEA-HGVVPDI------V--TMAKGIGNGIP-LGAVVTTPE---I-AEVLTRR-N  349 (447)
Q Consensus       285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~-~gv~pDi------v--t~sK~lg~G~p-igav~~~~~---i-~~~l~~~-~  349 (447)
                      ++||++||+||+|.+.-..+..+..... .+...|+      +  +++|.++ |++ .|++..+++   + ...+... .
T Consensus       338 ~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~-g~~~g~~i~~~~~~~~i~~~~~~~~~~  416 (755)
T 2vyc_A          338 EKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQAYM  416 (755)
T ss_dssp             TTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS-CCTTCEEEEEECCBTCCCHHHHHHHHH
T ss_pred             HHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc-CcCCeeeeeecCcccccCHHHHHHHHH
Confidence            9999999999999743112211100111 2200132      3  4679876 343 344544333   1 1112111 1


Q ss_pred             ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHH
Q 013235          350 YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       350 ~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      ...+.+.|...+++..++++.++.+   ++.++..++.++++++|+++..
T Consensus       417 ~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          417 MHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             HTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2233445667777777788877653   5788899999999999998754

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.09  E-value=1.1e-09  Score=117.51  Aligned_cols=230  Identities=11%  Similarity=0.130  Sum_probs=138.2

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCH-HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSG-TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sG-seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      +...+.++.+++++.++.  +..+|+.+| +.||.+++....  ..++.|++.+++|.. ...++.+++..         
T Consensus       193 ~~g~i~eaE~~lA~~fGa--~~a~~v~nGts~An~~ai~al~--~pGD~VLv~r~~H~S-~~~~l~lsGa~---------  258 (715)
T 3n75_A          193 HSGPHKEAEQYIARVFNA--DRSYMVTNGTSTANKIVGMYSA--PAGSTILIDRNCHKS-LTHLMMMSDVT---------  258 (715)
T ss_dssp             TBTHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHH-HHHHHHHSCCE---------
T ss_pred             CcHHHHHHHHHHHHHhCC--CCceEECcHHHHHHHHHHHHhC--CCCCEEEECCCccHH-HHHHHHHcCCE---------
Confidence            455678899999999854  555666666 699988887542  356677777666543 33344444321         


Q ss_pred             CeEeecCCCCcCCCCC----CChHH-HHHHHHHHHHccCCCC--eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235          218 GVHHALNPDPYRGVFG----ADGEM-YAKDVQDLIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~----~d~~~-~~~~le~~i~~~~~~~--~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~l  290 (447)
                         .+..+... ..|+    .+... -.++|++.+......+  .+.++++|  +..|.+.+    +++|.++|++++  
T Consensus       259 ---pv~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--  326 (715)
T 3n75_A          259 ---PIYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--  326 (715)
T ss_dssp             ---EEEECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--
T ss_pred             ---EEEEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--
Confidence               11111000 1121    10000 0677888887532111  15777788  67888887    999999998774  


Q ss_pred             EEEeccccCccccCCCc---ccccccCCCCCEE-----EeeccccCCcc-ccccccCHHHH-HhhcC-CcccccCCCChH
Q 013235          291 CIADEVQAGFARTGSHF---WGFEAHGVVPDIV-----TMAKGIGNGIP-LGAVVTTPEIA-EVLTR-RNYFNTFGGNPV  359 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~---~~~~~~gv~pDiv-----t~sK~lg~G~p-igav~~~~~i~-~~l~~-~~~~~T~~~np~  359 (447)
                      +|+||+|.+.-..+..+   .+.+ .+..+|++     +++|.+++ +. -|++.++.++. +.+.. .....|.+-|+.
T Consensus       327 livDEAH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~  404 (715)
T 3n75_A          327 IHFDSAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYMMHTTTSPHYG  404 (715)
T ss_dssp             EEEECTTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHH
T ss_pred             EEEccccccccccCCccccccccc-cCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHHHhhcCCCchHH
Confidence            79999997431112111   1111 12236754     46799864 22 24444544321 12221 123356667888


Q ss_pred             HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHH
Q 013235          360 CTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       360 a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      .+|+..++++.+++   +++.+++.++.++++++|+++..
T Consensus       405 ~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~  444 (715)
T 3n75_A          405 IVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT  444 (715)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            88888889988863   46889999999999999999864

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.07  E-value=2.8e-09  Score=115.11  Aligned_cols=231  Identities=13%  Similarity=0.072  Sum_probs=129.2

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      +.....++.+++++.++.+ ..++++|++++||.+++....  ..++.|++.+++|+....+.+..++            
T Consensus       171 ~~~~i~e~e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~--~pGD~VLv~~~~H~S~~~~~~~l~G------------  235 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV--SNGDLVLFDRNNHKSVYNSALAMAG------------  235 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHTTTTC------------
T ss_pred             ChHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhc--CCCCEEEEcCCchHHHHHHHHHHCC------------
Confidence            4567789999999999653 345566666699999998643  2567888888876554433132222            


Q ss_pred             eEeecCCCCcCCCCC----CChHHH-HHHHHHHHHcc------CCCC-eEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235          219 VHHALNPDPYRGVFG----ADGEMY-AKDVQDLIDFG------TSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~----~d~~~~-~~~le~~i~~~------~~~~-~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~  286 (447)
                      ...+..+... ..|+    .|.+.+ .+.|++.+...      .+.. .+.++.+|.  ..|.+.+    +++|.++|++
T Consensus       236 a~~v~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~  308 (730)
T 1c4k_A          236 GRPVYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGH  308 (730)
T ss_dssp             CEEEEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGG
T ss_pred             CEEEEEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHH
Confidence            1111111100 0111    132222 23347666532      1111 345666674  4788876    9999999999


Q ss_pred             hCCEEEEeccccCc-cccCCCc---ccc--cccCCC-CC-EEE--eeccccCCccccccc-cCHHH-------H--Hhhc
Q 013235          287 AGGLCIADEVQAGF-ARTGSHF---WGF--EAHGVV-PD-IVT--MAKGIGNGIPLGAVV-TTPEI-------A--EVLT  346 (447)
Q Consensus       287 ~g~llI~DEv~tGf-gr~G~~~---~~~--~~~gv~-pD-ivt--~sK~lg~G~pigav~-~~~~i-------~--~~l~  346 (447)
                      ||++||+||+|.+. +..+ ..   ...  +.++.. |+ +++  ++|.++ |++.|+++ .+++.       +  ..+.
T Consensus       309 ~g~~livDeAh~~~~~f~~-~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~  386 (730)
T 1c4k_A          309 LCDYIEFDSAWVGYEQFIP-MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFN  386 (730)
T ss_dssp             GBSEEEEECTTCCGGGSSG-GGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHH
T ss_pred             cCCeEEEEcccccccccCc-ccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHH
Confidence            99999999999632 2111 11   111  122431 22 554  679875 34333333 22211       1  1111


Q ss_pred             CC-cccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 013235          347 RR-NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA  393 (447)
Q Consensus       347 ~~-~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~  393 (447)
                      .. ....+.+.++..+++..++++.++.   +++.+++.++.++++++|++
T Consensus       387 ~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~  437 (730)
T 1c4k_A          387 NSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIK  437 (730)
T ss_dssp             HHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            10 1122334566666666667777654   45678888888889888877

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=98.94  E-value=2.1e-08  Score=100.16  Aligned_cols=288  Identities=11%  Similarity=0.055  Sum_probs=155.6

Q ss_pred             CCCCCHHHHHHHHHHHHhccc-cc------cc--ccchHHHHHHHHHHHhCCCCC-ceEEE-cCCHHHHHHHHHHHHHhh
Q 013235          113 CGHCHPYVVDSIVNQIKRIQH-ST------VL--YLNHAIADFAEALASKMPGNL-KVVFF-TNSGTEANELAIMMARLY  181 (447)
Q Consensus       113 lGh~~p~v~~A~~~~l~~~~~-~~------~~--~~~~~~~elae~L~~~~~~~~-~~v~~-~~sGseA~e~Aik~ar~~  181 (447)
                      -+--+|+|.+|+.+.+..... ..      .+  -....+.+.+++|++++..+. ++|+| +.|||++++++++-....
T Consensus        21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~  100 (377)
T 3e77_A           21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL  100 (377)
T ss_dssp             SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred             cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence            344689999999987754311 00      01  113456778888888886543 45777 589999999999854332


Q ss_pred             cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc
Q 013235          182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE  261 (447)
Q Consensus       182 t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E  261 (447)
                      ..++++++...+.++... ...+          ...|+.....|....  ++.+.    ++++..+   .+ ++..|.+-
T Consensus       101 ~~Gd~v~~~~~g~~~~~~-~~~a----------~~~G~~~~~~~~~~~--~~~~~----~~~~~~i---~~-~t~lV~~~  159 (377)
T 3e77_A          101 KAGRCADYVVTGAWSAKA-AEEA----------KKFGTINIVHPKLGS--YTKIP----DPSTWNL---NP-DASYVYYC  159 (377)
T ss_dssp             STTCEEEECCCSHHHHHH-HHHH----------TTTSEEEECSCCCSS--SCSCC----CGGGCCC---CT-TCSCEEEE
T ss_pred             CCCCeEEEEECCHHHHHH-HHHH----------HHhCCceEEeccCCC--cCCCC----ChHHhcc---CC-CccEEEEe
Confidence            224677776666665321 1111          112333222222111  11121    1222212   12 44455554


Q ss_pred             cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCH
Q 013235          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP  339 (447)
Q Consensus       262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~  339 (447)
                      -+....|.+.|    +     +|+++|+++++|-+|+ +|.   ...-++.++    ++++|  |.+| .--+|+++.++
T Consensus       160 h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~---~~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~  221 (377)
T 3e77_A          160 ANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS---KPVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRD  221 (377)
T ss_dssp             SEETTTTEECS----S-----CCCCTTCCEEEECTTT-TTS---SCCCGGGCS----EEEEEGGGTTS-CTTCEEEEEET
T ss_pred             CccCchheEch----h-----hhccCCCEEEEEcccc-cCC---CCCchhhcC----EEEEecccccC-CCccEEEEEcH
Confidence            45555688876    2     4788999999999997 432   222334444    45555  9884 22357777777


Q ss_pred             HHHHhhcCC-----------cccccCCCChHH-HHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCe-e
Q 013235          340 EIAEVLTRR-----------NYFNTFGGNPVC-TAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGII-G  402 (447)
Q Consensus       340 ~i~~~l~~~-----------~~~~T~~~np~a-~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i-~  402 (447)
                      ++.+.+.+.           ....+++..++. ..+..++|++++++ +   ..++.+++.++|+++|+++.   ++. .
T Consensus       222 ~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~  298 (377)
T 3e77_A          222 DLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVC  298 (377)
T ss_dssp             TSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEEC
T ss_pred             HHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---Cceec
Confidence            664332210           012344444444 44455789988765 2   45566667777777766541   111 1


Q ss_pred             --eEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          403 --DVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       403 --~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                        +-..+ +..+.+.+..-    .|+......+.+.+.++||.+.++
T Consensus       299 ~~~~~~rs~~ivsf~~~~~----~~~~~~~~~~l~~l~~~Gi~~~~g  341 (377)
T 3e77_A          299 PVEPQNRSKMNIPFRIGNA----KGDDALEKRFLDKALELNMLSLKG  341 (377)
T ss_dssp             CSCGGGBCSSEEEEEESST----TCCHHHHHHHHHHHHHTTEESCBC
T ss_pred             CCCHHHcCCcEEEEEcCCC----CCchhHHHHHHHHHHHCCcEEeCC
Confidence              10112 33466666321    122222246778888999998654

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.83  E-value=9.1e-08  Score=96.46  Aligned_cols=252  Identities=13%  Similarity=0.070  Sum_probs=148.1

Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhh--cCCCeEEEEcCCcccCchhhhhccCCCC-ccccccCCCeEeecCCCCcCCCCCCC
Q 013235          159 KVVFFTNSGTEANELAIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGAD  235 (447)
Q Consensus       159 ~~v~~~~sGseA~e~Aik~ar~~--t~~~~ii~~~~~yHG~~~~~~~~t~~~~-~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (447)
                      ...|++|++|-++.+++..+...  .+.++||+ .-.-|=+...++.+.+... |-.+.        ..++    .++.|
T Consensus       135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~--------~d~~----~~~id  201 (501)
T 3hl2_A          135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENV--------LEGD----ELRTD  201 (501)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEE--------EETT----EEEEC
T ss_pred             CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeee--------eccc----ccCCC
Confidence            35778888887777766655332  13467776 4555766667766655321 11110        0011    12234


Q ss_pred             hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc--cccccc
Q 013235          236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF--WGFEAH  313 (447)
Q Consensus       236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~--~~~~~~  313 (447)
                          .+++++.|++.+++.+++|+..|-...++...+    +++|.++|++||+++++||+|-+.-....++  .+++ +
T Consensus       202 ----~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~-~  272 (501)
T 3hl2_A          202 ----LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGAR-V  272 (501)
T ss_dssp             ----HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHH-H
T ss_pred             ----HHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHh-c
Confidence                678888888765568888888764433333344    9999999999999999999985432111000  0111 2


Q ss_pred             CCCCCEEEee--ccccCCccccc-cc-c-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q 013235          314 GVVPDIVTMA--KGIGNGIPLGA-VV-T-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGS  385 (447)
Q Consensus       314 gv~pDivt~s--K~lg~G~piga-v~-~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~  385 (447)
                      | ..|+++.|  |-+  =.|+|. ++ . ++++++.+.. .+..|-++.|..  ....+|..+-.   .+++++..++.+
T Consensus       273 G-rAD~vVqS~HK~l--lvpIGG~ii~~~d~e~l~~~~~-~yPGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~  346 (501)
T 3hl2_A          273 G-RIDAFVQSLDKNF--MVPVGGAIIAGFNDSFIQEISK-MYPGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFS  346 (501)
T ss_dssp             S-CCCEEEEEHHHHH--CCCSSCEEEEESCHHHHHHHHH-TSCSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcEEEecccccc--eeecCceEEEeCCHHHHHHHHH-hCCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 47999988  433  235544 33 2 5667665532 233444454543  23334443333   356788888999


Q ss_pred             HHHHHHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235          386 YLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA  441 (447)
Q Consensus       386 ~l~~~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv  441 (447)
                      +|+++|+++...++ .+.+.+..-.-+++.+.....   +.......+-..|+.|+|
T Consensus       347 ~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~r~v  400 (501)
T 3hl2_A          347 YLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFTRQV  400 (501)
T ss_dssp             HHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHhcCC
Confidence            99999999998775 355666666666777643311   111124467777888776

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.79  E-value=9.3e-08  Score=97.00  Aligned_cols=217  Identities=12%  Similarity=0.011  Sum_probs=123.7

Q ss_pred             ceEEEcCCHH-HHHHHHHHHHHhhc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCCh
Q 013235          159 KVVFFTNSGT-EANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG  236 (447)
Q Consensus       159 ~~v~~~~sGs-eA~e~Aik~ar~~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~  236 (447)
                      ...+++|++| .++..++..+|... +.+.||+.+. -|-+...++.+.+...          ..+. |.+.....+-| 
T Consensus       117 ~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~-aHkSv~kAl~l~Gl~p----------~~v~-~~~~~~~~~id-  183 (450)
T 3bc8_A          117 ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI-DQKSCFKSMVTAGFEP----------VVIE-NVLEGDELRTD-  183 (450)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC-CCHHHHHHHHHTTCEE----------EEEC-CEEETTEEECC-
T ss_pred             ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC-cHHHHHHHHHHcCCee----------EEEE-eeecCccCCcC-
Confidence            3458889887 66666777777632 2456666655 8888888877765321          1111 10000011234 


Q ss_pred             HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-
Q 013235          237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-  315 (447)
Q Consensus       237 ~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-  315 (447)
                         .+.|++.|++..++.+++|++.|-....|.+.+    +++|.++|++||+++++||+|-++-+...++. -+.+.. 
T Consensus       184 ---~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~-~~a~~~~  255 (450)
T 3bc8_A          184 ---LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLI-QQGARVG  255 (450)
T ss_dssp             ---HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH-HHHHHHS
T ss_pred             ---HHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHH-HHHhccc
Confidence               678888887654457889999875554455555    99999999999999999999865322110110 011111 


Q ss_pred             CCCEEEee--ccccCCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHH
Q 013235          316 VPDIVTMA--KGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKE  389 (447)
Q Consensus       316 ~pDivt~s--K~lg~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~  389 (447)
                      ..|.+++|  |-+..-+.-+.+.. +++..+.+.. .+..+-+.+|.  .....+|..+-.+.   +.++..++.+++++
T Consensus       256 ~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~-~~~g~~s~Sps--L~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~  332 (450)
T 3bc8_A          256 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK-MYPGRASASPS--LDVLITLLSLGCSGYRKLLKERKEMFVYLST  332 (450)
T ss_dssp             CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH-HSCSCBCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCccCCCchhccEEEEecCHHHHHHHHH-HhhcCCcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999888  65543233344443 5555554432 11111223342  11122222222222   34444777899999


Q ss_pred             HHHHHHHhcC
Q 013235          390 RLTALKDKYG  399 (447)
Q Consensus       390 ~L~~l~~~~~  399 (447)
                      .|+++..+++
T Consensus       333 ~l~~~~~~~g  342 (450)
T 3bc8_A          333 QLKKLAEAHN  342 (450)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHhhHHhcC
Confidence            9999887765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.69  E-value=5.7e-07  Score=89.21  Aligned_cols=279  Identities=10%  Similarity=-0.013  Sum_probs=148.3

Q ss_pred             CCHHHHHHHHHHHHhccc-cc------cc--ccchHHHHHHHHHHHhCCCC-CceEEE-cCCHHHHHHHHHHHHHhhcCC
Q 013235          116 CHPYVVDSIVNQIKRIQH-ST------VL--YLNHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGC  184 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~-~~------~~--~~~~~~~elae~L~~~~~~~-~~~v~~-~~sGseA~e~Aik~ar~~t~~  184 (447)
                      -+|+|.+|+.+.+..... ..      .+  -....+.+.+++|++++..+ ..+|+| +.||||+++++++-..   .+
T Consensus        16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~   92 (361)
T 3m5u_A           16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN   92 (361)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred             CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence            479999999987753211 00      01  11345677888899888654 346777 9999999999998543   33


Q ss_pred             CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc
Q 013235          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (447)
Q Consensus       185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~  264 (447)
                      +++.....+.++... .....     ++   ...+..++.+.  .+.+..+.    ++ +  +.   + ++..|.+--+.
T Consensus        93 ~~~~~i~~~~~~~~~-~~~a~-----~~---G~~v~~~~~~~--~g~~~~~~----~~-~--l~---~-~t~lv~~~~~e  150 (361)
T 3m5u_A           93 GVCEYANTGVWTKKA-IKEAQ-----IL---GVNVKTVASSE--ESNFDHIP----RV-E--FS---D-NADYAYICSNN  150 (361)
T ss_dssp             SCEEEEECSHHHHHH-HHHHH-----HT---TCCEEEEEECT--TTTSCSCC----CC-C--CC---T-TSSEEEEESEE
T ss_pred             CeEEEEeCCHHHHHH-HHHHH-----Hc---CCceEEEeccc--CcCCCcCC----hh-h--cC---C-CCCEEEEeCCC
Confidence            444333334444321 11110     00   01233443321  11110011    11 2  22   2 34455554444


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHH
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA  342 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~  342 (447)
                      ...|.+.++         +++ +|+++++|-+|+ +|..   ..-++    ..|++++|  |.+| .--+|+++.++++.
T Consensus       151 ~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~---~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~~~~  211 (361)
T 3m5u_A          151 TIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR---KVDFS----NIALFYGGVQKNAG-ISGLSCIFIRKDML  211 (361)
T ss_dssp             TTTTEECSS---------CCC-CSSCEEEECGGG-TTSS---CCCCT----TEEEEEEETTTTSS-CTTCEEEEEEHHHH
T ss_pred             CCcceeCCc---------ccc-cCCEEEEEcccc-cCCC---CCCcc----cCCEEEEechhccC-CCccEEEEEcHHHH
Confidence            455887542         333 499999999997 4421   11122    24888877  8884 22368888999887


Q ss_pred             HhhcC---Cc---------ccccCCC-ChHHHHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCeee--
Q 013235          343 EVLTR---RN---------YFNTFGG-NPVCTAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIGD--  403 (447)
Q Consensus       343 ~~l~~---~~---------~~~T~~~-np~a~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~--  403 (447)
                      +.+.+   ..         ...+++. |..+..+..++|+.+++. +   ..++.+++.++|+++|+++-.-+....+  
T Consensus       212 ~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~  291 (361)
T 3m5u_A          212 ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKK  291 (361)
T ss_dssp             HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGG
T ss_pred             hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHH
Confidence            66543   00         1123343 344455556789988765 3   4566667777777777654100000011  


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .|. ...+.+.+.+.     + ... ..+...|.++||.+..+
T Consensus       292 ~rs-~~ivsf~~~~~-----~-~~~-~~~~~~L~~~gI~~~~g  326 (361)
T 3m5u_A          292 DRS-LMNVSFNIAKN-----K-DLE-PLFVKEAEEAGMIGLKG  326 (361)
T ss_dssp             GBC-SSEEEEEESSC-----T-THH-HHHHHHHHHTTEECCBC
T ss_pred             HcC-CeEEEEECCCc-----h-hhh-HHHHHHHHHCCCEEecC
Confidence            111 23455555220     0 111 35778888999988643

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=98.66  E-value=8.3e-08  Score=96.16  Aligned_cols=288  Identities=10%  Similarity=0.023  Sum_probs=149.1

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc----------cccccccchHHHHHHHHHHHhCCCCC-ceEEE-cCC
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----------HSTVLYLNHAIADFAEALASKMPGNL-KVVFF-TNS  166 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~----------~~~~~~~~~~~~elae~L~~~~~~~~-~~v~~-~~s  166 (447)
                      +.|||-.+...      -+|+|.+|+.+.+....          |... -....+.+.+++|++++..+. ++|+| +.|
T Consensus        27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~-~~~~~~~~ar~~la~ll~~~~~~evif~t~~   99 (386)
T 3qm2_A           27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGK-EFIQVAEEAEQDFRDLLNIPSNYKVLFCHGG   99 (386)
T ss_dssp             CCEECCSSSCC------CCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESC
T ss_pred             cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCC
Confidence            46787543222      47999999987664321          1000 012344677788888886543 45777 699


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCC--CChHHHHHHHH
Q 013235          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG--ADGEMYAKDVQ  244 (447)
Q Consensus       167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~--~d~~~~~~~le  244 (447)
                      |||+++++++-..  ..++++++...+.++.. +......   +      ..+..++.+..   .++  .+    .++++
T Consensus       100 ~T~a~n~ai~~l~--~~gd~v~~~~~~~~~~~-~~~~a~~---~------G~v~~v~~~~~---~~G~~~~----~~~~~  160 (386)
T 3qm2_A          100 GRGQFAGVPLNLL--GDKTTADYVDAGYWAAS-AIKEAKK---Y------CAPQIIDAKIT---VDGKRAV----KPMRE  160 (386)
T ss_dssp             TTHHHHHHHHHHC--TTCCEEEEEESSHHHHH-HHHHHTT---T------SEEEEEECEEE---ETTEEEE----CCGGG
T ss_pred             chHHHHHHHHhcc--CCCCeEEEEeCCHHHHH-HHHHHHH---h------CCeEEEecCcc---cCCCCCC----chHHH
Confidence            9999999997542  24567766666666542 2111100   0      01333332200   011  01    12233


Q ss_pred             HHHHccCCCCeEEEEEccccCCCcee-eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee
Q 013235          245 DLIDFGTSGHVAGFLSESIQGVGGII-ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA  323 (447)
Q Consensus       245 ~~i~~~~~~~~aavi~Epi~~~gG~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s  323 (447)
                      +.+.    .++..|.+--+....|.+ .|    +++|   +  +|+++++|=+|+ +|.   ...-++.+|    ++++|
T Consensus       161 ~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i---~--~g~~~~vDa~qs-~g~---~pidv~~~~----~~~~s  219 (386)
T 3qm2_A          161 WQLS----DNAAYLHYCPNETIDGIAIDE----TPDF---G--PEVVVTADFSST-ILS---APLDVSRYG----VIYAG  219 (386)
T ss_dssp             CCCC----TTCSCEEECSEETTTTEECCC----CCCC---C--TTCCEEEECTTT-TTS---SCCCGGGCS----EEEEE
T ss_pred             hhcC----CCCcEEEEECCcCCcCEecCc----hhhh---c--CCCEEEEEcccc-cCC---CCCCccccC----EEEEe
Confidence            2222    245556666666667886 54    3333   2  899999999996 542   122234443    45555


Q ss_pred             --ccccCCccccccccCHHHHHhhcCC-----------cccccCC-CChHHHHHHHHHHHHHhhh----hHHHHHHHHHH
Q 013235          324 --KGIGNGIPLGAVVTTPEIAEVLTRR-----------NYFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGS  385 (447)
Q Consensus       324 --K~lg~G~pigav~~~~~i~~~l~~~-----------~~~~T~~-~np~a~aaala~L~~i~~~----~l~~~~~~~g~  385 (447)
                        |.+| -.-+|++..++++.+.+.+.           .....++ -|..+.++..++|+.+.++    +..++.+++.+
T Consensus       220 ~hK~lG-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~  298 (386)
T 3qm2_A          220 AQKNIG-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAE  298 (386)
T ss_dssp             TTTTTC-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccccC-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              8884 22367788887764332210           0011222 2344555566788887664    34556666777


Q ss_pred             HHHHHHHHHHHhcCCeeeE---eec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          386 YLKERLTALKDKYGIIGDV---RGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~~v---rg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +|+++|+++    ++....   ..+ ...+.+.+.+.       ... ..+...|.++||.++.+
T Consensus       299 ~l~~~l~~~----~~~~~~~~~~~rs~~iv~f~~~~~-------~~~-~~~~~~L~~~gI~~~~g  351 (386)
T 3qm2_A          299 LLYGVIDNS----DFYRNDVAQANRSRMNVPFQLADN-------TLD-KVFLEESFAAGLHALKG  351 (386)
T ss_dssp             HHHHHHHTC----SSEECCBCGGGBCSSEEEEEESSG-------GGH-HHHHHHHHHTTEECCBC
T ss_pred             HHHHHHHHC----CCcccCCCHHHcCceEEEEECCCc-------ccc-HHHHHHHHHCCCEEeCC
Confidence            777777654    322111   111 23455655211       111 45777788999987653

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=97.87  E-value=0.00039  Score=69.91  Aligned_cols=182  Identities=11%  Similarity=0.035  Sum_probs=99.6

Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCC
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPD  318 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pD  318 (447)
                      .++++++..+.   ++..||+-.      ..-+-+--+++++++|++.|++|++|=+|. |+--.|  .+- .-+. ..|
T Consensus       192 yd~~~~~A~~~---kPklIi~G~------SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g--~~p-sP~~-~AD  258 (490)
T 3ou5_A          192 YNQLALTARLF---RPRLIIAGT------SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAK--VIP-SPFK-HAD  258 (490)
T ss_dssp             HHHHHHHHHHH---CCSEEEECC------SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT--SSC-CGGG-TCS
T ss_pred             HHHHHHHHhhc---CCCeEEECC------ccCccccCHHHHHHHHhhcccEEEechhhhhhhhccc--ccC-Cccc-cce
Confidence            57787777665   445677643      122222338999999999999999999864 332222  221 1122 269


Q ss_pred             EEEee--ccccCCccccccccCH---------------HHHHhhcCCcccccCCCChHHHHHHHHH-HHHHhh---hhHH
Q 013235          319 IVTMA--KGIGNGIPLGAVVTTP---------------EIAEVLTRRNYFNTFGGNPVCTAAGHAV-LKVIQK---DKLQ  377 (447)
Q Consensus       319 ivt~s--K~lg~G~pigav~~~~---------------~i~~~l~~~~~~~T~~~np~a~aaala~-L~~i~~---~~l~  377 (447)
                      +||.+  |.|.| -+-|.+++++               ++.+.+....+....+|+-.-..||+++ +....+   .+++
T Consensus       259 vVTtTTHKTLrG-PrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya  337 (490)
T 3ou5_A          259 IVTTTTHKTLRG-ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYS  337 (490)
T ss_dssp             EEEEESSSTTCS-CSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             EEeccccccccC-CCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHH
Confidence            99876  88864 2224455544               3444454433445555654444455543 433222   2466


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.++.+.|-+.|.+.  .+.++..-.- --++.+++....       ....+..+.|-+-||.+..
T Consensus       338 ~qVv~NAkaLA~~L~~~--G~~vvsGgTd-nHlvLvDl~~~g-------~tG~~ae~~Le~agItvNk  395 (490)
T 3ou5_A          338 LQVLKNARAMADALLER--GYSLVSGGTD-NHLVLVDLRPKG-------LDGARAERVLELVSITANK  395 (490)
T ss_dssp             HHHHHHHHHHHHHHHHT--TCEEGGGSCS-SSEEEEECGGGT-------CCHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHhC--CCeeecCCCC-ceEEEEeccccC-------CCHHHHHHHHHHcCcEECC
Confidence            77777788887777664  4443321000 123344543211       0123444556677988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	4e-76
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	5e-73
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	9e-71
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	5e-66
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	3e-62
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	2e-56
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	1e-43
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	3e-43
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	4e-17
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	5e-16
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	1e-10
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	3e-05
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	5e-05
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	0.003

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  242 bits (617), Expect = 4e-76
 Identities = 108/382 (28%), Positives = 178/382 (46%), Gaps = 6/382 (1%)

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  E++ +R   +   +  ++  P+     +   ++D  GR YLD  GGIA +  GH HP
Sbjct: 2   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 59

Query: 119 YVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANELAIM 176
            VV ++  Q+K++ H+    L +    +  E +  K+PG+  K      +G+EA E A+ 
Sbjct: 60  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 119

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGAD 235
           +AR  T  +  I+   AYHG    T+  T + N +   +     H      P      ++
Sbjct: 120 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 179

Query: 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
            +  A   +   +      +A  + E +QG GG    +P ++  +     + G + IADE
Sbjct: 180 DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE 239

Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG 355
           VQ+G  RT    +  E  GV PD+ T AK I  G PL  V    E+ + +       T+ 
Sbjct: 240 VQSGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA 298

Query: 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           GNP+   A   VLKV +++ L   A+ +G  LK+ L A+ +K+  IGDVRG G ++ +E 
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358

Query: 416 VTDRQLKTPAKAETLYIMDKMK 437
             D     P    T  I+ + +
Sbjct: 359 FEDGDHNKPDAKLTAEIVARAR 380

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  232 bits (593), Expect = 5e-73
 Identities = 110/361 (30%), Positives = 174/361 (48%), Gaps = 27/361 (7%)

Query: 62  EILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
            +L   KT  S     +Y+K  L +V G+   ++D  G  Y+D  GG      GH +P V
Sbjct: 3   ALLEAEKTLDS----GVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEV 58

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V+++  Q + +             +F   L + +P  L  VF  NSGTEANE A+  AR 
Sbjct: 59  VEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA 118

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEM 238
           +TG    ++    + G   G++  T +  ++  F  +   V       PY  V       
Sbjct: 119 HTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFI----PYNDV------- 167

Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
             + ++  +D       A  + E +QG GG+    P +L A  +  ++ G L I DE+Q 
Sbjct: 168 --EALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 221

Query: 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
           G  RTG  F  FE  G+VPDI+T+AK +G G+PLG  V   E+A  + +  +  TFGGNP
Sbjct: 222 GMGRTGKRFA-FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNP 280

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +  AAG A ++ +++ +L   A  +G +  E+L A+      I +VRG G ++G+E    
Sbjct: 281 LAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLELKEK 338

Query: 419 R 419
            
Sbjct: 339 A 339

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  227 bits (579), Expect = 9e-71
 Identities = 97/371 (26%), Positives = 164/371 (44%), Gaps = 23/371 (6%)

Query: 58  PSADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           P++D+I  +   + +    H     P+ +  GK  YL+D  GR+Y D    I+ V  GHC
Sbjct: 3   PTSDDIFEREYKYGA----HNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHC 58

Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176
           HP +V+++ +Q+ ++  ++  + N+ + ++ E        N   V   N+G EA E A  
Sbjct: 59  HPKIVNALKSQVDKLTLTSRAFYNNVLGEYEE--YITKLFNYHKVLPMNTGVEAGETACK 116

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG 236
           +AR +      I    A              +   +    + +  + +P  Y G      
Sbjct: 117 LARKWGYTVKGIQKYKAKI---------VFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP 167

Query: 237 EMYA---KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
                   D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 168 GFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 227

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ART   +   +   V PDIV + K +  G  P+ AV+   +I   +    +F+
Sbjct: 228 DEIQTGLART-GRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS 286

Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L  
Sbjct: 287 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNA 344

Query: 413 VEFVTDRQLKT 423
           +     +    
Sbjct: 345 IVIKETKDWDA 355

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  215 bits (547), Expect = 5e-66
 Identities = 79/363 (21%), Positives = 151/363 (41%), Gaps = 15/363 (4%)

Query: 59  SADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           + ++ +     + +    H Y   P+ +   K  +++D N +RY D     ++V  GHCH
Sbjct: 2   TPEDYINNELKYGA----HNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCH 57

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P ++++++NQ K +   +  + +  +      L + +  +  ++  T +        +  
Sbjct: 58  PNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCR 117

Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE 237
                   ++  +              + ++    +   T    +     +        +
Sbjct: 118 KW----GYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS----NFGPFAPQFSK 169

Query: 238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
           +   D++ L +     +V  F+ E IQG  G+I  +  YL  VY   KK   L +ADEVQ
Sbjct: 170 VPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ 229

Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGG 356
            G  RT         + V PD++ + K +  G  P+ AV+   +I  V+    + +T+GG
Sbjct: 230 TGLGRT-GKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGG 288

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
           NP+  +     L V+  +KL  NA  +G    E L        I+ DVRG+G L  +EF 
Sbjct: 289 NPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFK 348

Query: 417 TDR 419
            + 
Sbjct: 349 NEL 351

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  205 bits (523), Expect = 3e-62
 Identities = 90/397 (22%), Positives = 152/397 (38%), Gaps = 29/397 (7%)

Query: 61  DEILAKRKTFL-------SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
           DEI A  +  +         +   +  +P+     K  Y +D +G RY+D  G      C
Sbjct: 7   DEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAIC 66

Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173
           GH HP V++++   +++           A+ +    + +    ++++V F NSGTEA   
Sbjct: 67  GHAHPEVIEALKVAMEKGTS---FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMA 123

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHALNPDPYRGVF 232
            + + R YTG + II     YHG+A   +           +  + GV      +      
Sbjct: 124 VLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT--- 180

Query: 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
                   + V+ L      G +AG + E I G  G I    G+L  + +   +   L +
Sbjct: 181 --TPYNDLEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLV 237

Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLT---RRN 349
            DEV  GF     +    E  GV PD+ T+ K IG G+P+GA     EI +++       
Sbjct: 238 FDEVMTGFRIA--YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 295

Query: 350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
              T  GNP+   AG   L+++++         +   L + L A+  + G          
Sbjct: 296 QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355

Query: 410 LLGVEFVTD-----RQLKTPAKAETLYIMDKM--KGI 439
           + G  F           K     +       M  +GI
Sbjct: 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGI 392

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score =  190 bits (483), Expect = 2e-56
 Identities = 127/362 (35%), Positives = 179/362 (49%), Gaps = 8/362 (2%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+ 
Sbjct: 24  PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
            + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG     
Sbjct: 84  PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143

Query: 202 MGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL----IDFGTSGHVA 256
             AT  +          G      P  YR  F  +G        D     ID  +SG++A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203

Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV 316
            F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F      GV 
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR-DGVT 262

Query: 317 PDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKVIQKD 374
           PDI+T++K +G G+PL A+VT+  I E      Y    T   +P+  A G  VL V+Q+D
Sbjct: 263 PDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD 434
            L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA      I  
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITR 382

Query: 435 KM 436
           + 
Sbjct: 383 EC 384

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (395), Expect = 1e-43
 Identities = 90/371 (24%), Positives = 148/371 (39%), Gaps = 19/371 (5%)

Query: 75  LFHLYS------KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI 128
           + H ++          VV  +   L   +GRR +D          G+ HP +  ++ +QI
Sbjct: 13  ILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI 72

Query: 129 KRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT----- 182
             + H     + HA A +    L +  P  L+ VF  +SG+ A E+A+ MA  Y      
Sbjct: 73  DAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132

Query: 183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242
                ++ RN YHG+  G M      N   ++ +  +   L     +     + +     
Sbjct: 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192

Query: 243 VQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
               +       +A  + E I  G GG+    P +L  + K   + G L IADE+  GF 
Sbjct: 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-----NYFNTFGG 356
           RTG  F    A      +       G  + L A +TT E+AE ++        +  TF G
Sbjct: 253 RTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMG 312

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
           NP+  AA +A L +++    Q     +   L+E+L   +D   ++ DVR  G +  VE  
Sbjct: 313 NPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETT 371

Query: 417 TDRQLKTPAKA 427
               +    K 
Sbjct: 372 HPVNMAALQKF 382

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  155 bits (393), Expect = 3e-43
 Identities = 75/417 (17%), Positives = 130/417 (31%), Gaps = 54/417 (12%)

Query: 48  FDYSPP----PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLD 103
           FDY  P       GP + E++ +     +    H      N  + +  YL D +G R LD
Sbjct: 1   FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVDVDGNRMLD 57

Query: 104 AFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-----AIADFAEALASKMPGNL 158
            +  I+++  G+ HP +V  +              L        +    E+L S  P  +
Sbjct: 58  LYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM 117

Query: 159 KVVFFTNSGTEANELAIMMARLY--------------------------TGCNDIISLRN 192
             +     G+ +NE A     ++                               I+S   
Sbjct: 118 SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMG 177

Query: 193 AYHGNAAGTMGATAQS-------NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245
           A+HG   G +  T                +          + +      +     ++V+D
Sbjct: 178 AFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVED 237

Query: 246 LIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV-QAGFAR 302
           LI         VAG + E IQ  GG    +  +   +    +K G   + DEV   G + 
Sbjct: 238 LIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST 297

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
                          D++T +K +  G         P     +      +      +   
Sbjct: 298 GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 357

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTD 418
                   I+++ L +NA   G  L   L  L+ +Y   I  VRGRG     +   +
Sbjct: 358 INI-----IKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDE 409

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 81.1 bits (199), Expect = 4e-17
 Identities = 40/364 (10%), Positives = 92/364 (25%), Gaps = 50/364 (13%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYV---VDSIVNQIKRIQHSTVLYLNHAIAD--- 145
                  R       G+          ++    DS    + +   + ++  + A +    
Sbjct: 16  KRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRS 75

Query: 146 ---FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHG 196
               AE++ +      +    T+ G  A ++ I +             + +++  N +  
Sbjct: 76  YYALAESVKNIF--GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133

Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
               T G +  +          V+     D     +   G    + ++  I+     +V 
Sbjct: 134 T---TQGHSQINGCTVRN----VYIKEAFDTG-VRYDFKGNFDLEGLERGIEEVGPNNVP 185

Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWGFEAHG 314
             ++       G   ++   L A+Y   KK     + D  +              ++   
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245

Query: 315 V---------VPDIVTMAKGIGNGIPLGAVVTT---PEIAEVLTRRNYFNTFGGNP---- 358
           +           D++ M+      +P+G ++              R       G P    
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG 305

Query: 359 ---VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY----GIIGDVRGRGFLL 411
                       L                 YL + L  +        G    V     L 
Sbjct: 306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLP 365

Query: 412 GVEF 415
            +  
Sbjct: 366 HIPA 369

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 77.7 bits (190), Expect = 5e-16
 Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 33/302 (10%)

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHG 196
           +    D  +            +   + G  A  +   +   Y    G        + +H 
Sbjct: 74  SRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHF 131

Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
           +                V +         D         G+   K +++ I    + ++ 
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDW-------KGDFDIKKLKENIAQHGADNIV 184

Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-----FWGFE 311
             +S       G   ++   L  VY+  K+ G   + D  +              +    
Sbjct: 185 AIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT 244

Query: 312 AHGVVPDIV------TMAKGIGNGIPLGAVVTTPEIAE-------VLTRRNYFNTFGGNP 358
              V+ D+       TM+      + +G +V   +  E              F T+GG  
Sbjct: 245 IKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA 304

Query: 359 -VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
               AA    L+   +++  +       YL +RL        I     G    +  + + 
Sbjct: 305 GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIP--IQYPTGGHAVFVDCKKLV 362

Query: 418 DR 419
            +
Sbjct: 363 PQ 364

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 60.2 bits (144), Expect = 1e-10
 Identities = 29/303 (9%), Positives = 64/303 (21%), Gaps = 20/303 (6%)

Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173
               P V  ++V        +     +   A        ++      VF   +GT AN L
Sbjct: 13  AGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFC-EIFERDVEVFLVPTGTAANAL 69

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG 233
            +       G        +  +                      G        P   +  
Sbjct: 70  CLSAMTPPWGNIYCHPASHINNDEC-----------GAPEFFSNGAKLMTVDGPAAKLDI 118

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
                  ++    +       V+   +  +  +  +       + A+    K +      
Sbjct: 119 VRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-----EIEAIGDVCKSSSLGLHM 173

Query: 294 DEVQAGFARTGSHFWGFEAHGVV-PDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN 352
           D  +   A         E       D ++        +   A+V                
Sbjct: 174 DGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKR 233

Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
               +         +   +  D    NA    +  +     L+   G+         +L 
Sbjct: 234 AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILF 293

Query: 413 VEF 415
              
Sbjct: 294 CRL 296

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 32/280 (11%), Positives = 64/280 (22%), Gaps = 20/280 (7%)

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
            V   +  I +     A       +   F  SGT  N+++IM          + +  + +
Sbjct: 28  DVYGEDPTINELERLAAETF--GKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIF 85

Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
                              +           DP                           
Sbjct: 86  WYEVGAMA------VLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFP-----------R 128

Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
            +    E+     G   +    +  +    K+ G     D  +   A   S     E  G
Sbjct: 129 TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG 188

Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374
               ++              VV   +  E   +       G       A   ++ + +  
Sbjct: 189 YADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV 248

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
                 H    +L  +L  +        DV+    +L  +
Sbjct: 249 DRLKEDHENARFLALKLKEIGYSV-NPEDVKTNMVILRTD 287

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 31/283 (10%), Positives = 63/283 (22%), Gaps = 22/283 (7%)

Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175
            HP ++D +               +   A  A  +   +      V F + GT+ N +A 
Sbjct: 12  MHPKILDLMARDNM--TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69

Query: 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD 235
            +                            A      +  +TG   A             
Sbjct: 70  SL-------------------ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110

Query: 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
               A     L +  +   V   L           +     L  +  S K+ G     D 
Sbjct: 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 170

Query: 296 V-QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
              A    +  +         + D+  +      G+   A++   +  +   R       
Sbjct: 171 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRG 230

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK 397
                    G     +++ +                   L+  
Sbjct: 231 ALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC 273

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 6/54 (11%), Positives = 14/54 (25%)

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
            + +      S      +      SGT   ++      L    N  + + +   
Sbjct: 41  VLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGT 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.97
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.94
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.88
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.87
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.86
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.86
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.85
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.82
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.82
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.81
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.8
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.8
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.8
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.79
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.78
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.77
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.77
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.77
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.75
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.74
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.74
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.73
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.73
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.73
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.71
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.7
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.64
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.64
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.61
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.55
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.54
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.54
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.53
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.52
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.51
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.51
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.47
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.42
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.4
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.39
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.38
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.35
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.34
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.3
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.24
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.23
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.19
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.18
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.18
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.17
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.15
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.15
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.14
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.13
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.1
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.08
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.08
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.05
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.03
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.01
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	98.97
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	98.96
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.88
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.85
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	98.81
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	98.77
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	98.77
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.57
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.57
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	98.54
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.52
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.4
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.07
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	97.9
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	97.9
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	97.79
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	97.56

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-76  Score=603.83  Aligned_cols=381  Identities=29%  Similarity=0.480  Sum_probs=331.8

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-c
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-L  137 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~  137 (447)
                      ++++++++++++++......  .|+++++|+|+||||.|||+||||++|+++++|||+||+|++|+.+|++++.|.+. .
T Consensus         2 ~~~~l~~r~~~~~~~g~~~~--~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~   79 (425)
T d1sffa_           2 SNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV   79 (425)
T ss_dssp             CHHHHHHHHHHHSCTTBCCS--EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred             chHHHHHHHHHhcCCCCCCC--CCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccc
Confidence            47889999999988764433  48999999999999999999999999999999999999999999999999887653 4


Q ss_pred             ccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          138 YLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      +.++...+|+++|.+.+|.+ .++++|+||||||+|.|+|+||.+|+|.+||+++++|||++.+++++++..........
T Consensus        80 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~  159 (425)
T d1sffa_          80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  159 (425)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcc
Confidence            56889999999999999865 57899999999999999999999999999999999999999999999986544332211


Q ss_pred             ---CCeEeecCCCCcCCCCCCChHHHHHHHHHHH-HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235          217 ---TGVHHALNPDPYRGVFGADGEMYAKDVQDLI-DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (447)
Q Consensus       217 ---~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i-~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI  292 (447)
                         ......+.|......+   ........++++ .....+++||||+||||+++|+++++++||++|+++|++||++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI  236 (425)
T d1sffa_         160 LMPGHVYRALYPCPLHGIS---EDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  236 (425)
T ss_dssp             CCCSSEEEECCCBGGGTBC---HHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cccCCccccCCcccccccc---chhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEE
Confidence               2333344443332211   111122222322 233456899999999999999999999999999999999999999


Q ss_pred             EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (447)
Q Consensus       293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~  372 (447)
                      +|||||||||+| .+|+++++|+.|||+|+||+||||+|+|++++++++++.+....+++||+|||++|++|+++|++|+
T Consensus       237 ~DEV~tG~gR~g-~~~a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~  315 (425)
T d1sffa_         237 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  315 (425)
T ss_dssp             EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             eccccccCCCcc-hhhHHHhcCCCccceecccccCCCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999 7999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       373 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++.+++++++++|+++|+++.++++.+.+|||.|+|++++|.++.....|+.....++.++|+++||++.+
T Consensus       316 ~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~  388 (425)
T d1sffa_         316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLS  388 (425)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEE
T ss_pred             HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEec
Confidence            9999999999999999999999999999999999999999999987777778888888999999999998853

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=6.5e-75  Score=593.56  Aligned_cols=379  Identities=34%  Similarity=0.514  Sum_probs=331.1

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch
Q 013235           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH  141 (447)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~  141 (447)
                      .+..+.++|+......  ..|++|++|+|+||||.|||+||||.+|+++++|||+||+|.+|+.+|++++.|....++++
T Consensus         6 ~~~~~~~~~~~~~~~~--~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~   83 (431)
T d1zoda1           6 TFWRNARHHLVRYGGT--FEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR   83 (431)
T ss_dssp             HHHHHHHHHCCCCSSC--CCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCH
T ss_pred             HHHHhhHHHhhccCCC--CCCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccH
Confidence            5566667776553211  14899999999999999999999999999999999999999999999999998877777889


Q ss_pred             HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC-CCeE
Q 013235          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVH  220 (447)
Q Consensus       142 ~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~-~g~~  220 (447)
                      ...+|+++|++..|.++++|+|+||||||||.|||+||.+|+|++|++|+++|||++.++++++....+....+. .++.
T Consensus        84 ~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
T d1zoda1          84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSF  163 (431)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEE
T ss_pred             HHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCce
Confidence            999999999999988889999999999999999999999999999999999999999999999876544433332 5677


Q ss_pred             eecCCCCcCCCCCC----ChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          221 HALNPDPYRGVFGA----DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       221 ~~~~p~~~~~~~~~----d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .++.|..++..+..    +....++.+++.+....++++||||+|||||++|++++|++||++|+++|++||++||+|||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV  243 (431)
T d1zoda1         164 AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA  243 (431)
T ss_dssp             EECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred             eeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccc
Confidence            77766555443321    12223445555555555779999999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD  374 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~  374 (447)
                      ||||||+| .+|+++++|++|||+|+||+|+||+|++++++++++++.+...  .+++||++||++|++++++|++++++
T Consensus       244 ~tG~gRtG-~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~  322 (431)
T d1zoda1         244 QTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD  322 (431)
T ss_dssp             TTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred             cccccccc-cccccccCCCCcchhccccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhh
Confidence            99999999 7999999999999999999999999999999999998876543  47799999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       375 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ++.+++.+++++++++|+++.++++.+.+|||.|+|++|+|++++.+..|......++.++|+++|+++
T Consensus       323 ~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~  391 (431)
T d1zoda1         323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSM  391 (431)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEEC
T ss_pred             hhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999999999887777776667788999999999864

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-72  Score=571.56  Aligned_cols=358  Identities=27%  Similarity=0.474  Sum_probs=316.0

Q ss_pred             CCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235           58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (447)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~  137 (447)
                      |++++++++.++|.+.+   +++.|++|++|+|+||||.|||+||||++|+++++|||+||+|++|+++|++++.+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~---~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~   79 (404)
T d2byla1           3 PTSDDIFEREYKYGAHN---AHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRA   79 (404)
T ss_dssp             CCHHHHHHHHHHHBCSC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTT
T ss_pred             CcHHHHHHHHHHhccCC---CCCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccc
Confidence            67899999999996654   456699999999999999999999999999999999999999999999999998877666


Q ss_pred             ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc--------CCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t--------~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      +.++...++++++.+..  +.+.++|+||||||++.|+|+||.++        ++.+|+.+.++|||.+.++++.+..+.
T Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~  157 (404)
T d2byla1          80 FYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPT  157 (404)
T ss_dssp             EEESSHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHH
T ss_pred             cccchHHHHHHhhhhcc--cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcc
Confidence            66777778888888775  45789999999999999999999875        567899999999999999999887655


Q ss_pred             ccccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235          210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (447)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~  287 (447)
                      ++..+.+  .++..++.         +|    ++++++.+.   .+++||||+||+||++|+++++++||++|+++|++|
T Consensus       158 ~~~~~~p~~~~~~~~p~---------~d----~~~l~~~l~---~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~  221 (404)
T d2byla1         158 SYDGFGPFMPGFDIIPY---------ND----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH  221 (404)
T ss_dssp             HHTTSCSCCTTEEEECT---------TC----HHHHHHHHT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCeeEecc---------cC----HHHHHHhcC---CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc
Confidence            4433322  34555543         23    677888775   358999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHH
Q 013235          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA  366 (447)
Q Consensus       288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala  366 (447)
                      |++||+|||||||||+| ++|+++++|++|||+||||+|+|| +|+|++++++++++.+....|++||+|||++|++|++
T Consensus       222 g~llI~DEV~tGfgR~G-~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a  300 (404)
T d2byla1         222 QVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIA  300 (404)
T ss_dssp             TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHH
T ss_pred             CeEEEeecccccccccc-ccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHH
Confidence            99999999999999999 799999999999999999999998 7999999999999999888899999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +|++|+++++.+++++++++|+++|.++.  .+.+.+|||.|+|++|++.+++..      .+.++.++|+++||++.+
T Consensus       301 ~L~~i~~~~l~~~~~~~g~~l~~~l~~l~--~~~i~~vRg~Gl~~~i~~~~~~~~------~~~~~~~~l~~~Gvl~~~  371 (404)
T d2byla1         301 ALEVLEEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVIKETKDW------DAWKVCLRLRDNGLLAKP  371 (404)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHTSC--TTTEEEEEEETTEEEEEECCCSSC------CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHhcCchhhhhHhhHHHHHHHHhhc--cccceeeeecccEEEEEEecCCch------hHHHHHHHHHhCCeEEec
Confidence            99999999999999999999999999984  467999999999999999754321      245788999999999864

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-72  Score=566.20  Aligned_cols=353  Identities=31%  Similarity=0.511  Sum_probs=313.3

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc
Q 013235           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (447)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~  140 (447)
                      +++++..+.+....   |.+.|++|++|+|+||||.|||+||||.+++++++|||+||+|.+|+.+|++++.+.+..+.+
T Consensus         2 ~~~~~~~~~~~~~~---y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~   78 (387)
T d1vefa1           2 RALLEAEKTLDSGV---YNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT   78 (387)
T ss_dssp             HHHHHHHHHHBCSC---SCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred             hhHHhhhhhccCCC---CCCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCC
Confidence            45677777776554   556799999999999999999999999999999999999999999999999998776666778


Q ss_pred             hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CC
Q 013235          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TG  218 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g  218 (447)
                      +...+|+++|.+..+...++|+|++|||||||.|||+||.+++|++|++++++|||++.+++++++.+.++..+.+  .+
T Consensus        79 ~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~  158 (387)
T d1vefa1          79 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP  158 (387)
T ss_dssp             HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred             chHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCC
Confidence            8999999999999988888999999999999999999999999999999999999999999999986654433322  34


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  298 (447)
                      +.++++         +|    ++.|++.++    +++||||+|||||++|+++++++||++|+++|++||+++|+|||+|
T Consensus       159 ~~~~p~---------~d----~~~l~~~~~----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t  221 (387)
T d1vefa1         159 VEFIPY---------ND----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  221 (387)
T ss_dssp             EEEECT---------TC----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ceEeCC---------CC----HHHHHHhcC----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc
Confidence            555543         23    566776653    5899999999999999999999999999999999999999999999


Q ss_pred             CccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHH
Q 013235          299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN  378 (447)
Q Consensus       299 Gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~  378 (447)
                      ||||+| .+|+++++|++|||+|+||+|+||+|++++++++++++.+....|++||+|||++|++|+++|++++++++.+
T Consensus       222 GfgR~G-~~~~~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~  300 (387)
T d1vefa1         222 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE  300 (387)
T ss_dssp             TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccCccC-CCcccccCCcCCceeeecccCCCCccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccc
Confidence            999999 7999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       379 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++++++++|+++|+++.  .+.+.+|||.|+|++|++.++.         ...+.+.++++|+++..
T Consensus       301 ~v~~~g~~l~~~L~~l~--~~~v~~vrg~Gl~~~ie~~~~~---------~~~~~~~~~~~g~l~~~  356 (387)
T d1vefa1         301 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEKA---------APYIARLEKEHRVLALQ  356 (387)
T ss_dssp             HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSCS---------HHHHHHHHHHHCEECEE
T ss_pred             hHhhhhHHHHHHHHhcC--CCceEEEeecceEEEEEEeCCc---------hHHHHHHHHHCCCeEEe
Confidence            99999999999999884  4678999999999999996432         34567778888988653

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=8.6e-72  Score=569.26  Aligned_cols=378  Identities=24%  Similarity=0.344  Sum_probs=322.0

Q ss_pred             CCCHHHHHHHHhhhcCCccc-------cccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235           57 GPSADEILAKRKTFLSPSLF-------HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (447)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~  129 (447)
                      ..++++++++.+++++....       .+...|+++++++|+||||.|||+||||.++++++++||+||+|++|+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~   82 (427)
T d2gsaa_           3 TIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME   82 (427)
T ss_dssp             CHHHHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHH
Confidence            45688999999999763321       12356999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (447)
Q Consensus       130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~  209 (447)
                      ++.+.  ...+....++++++.+..|. .+.++|++||+||||.|+|+||.+|+|++||+++++|||++.+++++++...
T Consensus        83 ~~~~~--~~~~~~~~~la~~~~~~~~~-~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~  159 (427)
T d2gsaa_          83 KGTSF--GAPCALENVLAEMVNDAVPS-IEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGV  159 (427)
T ss_dssp             TCSCC--SSCCHHHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHH
T ss_pred             hcCcc--ccchhHHHHHHHHHHhhCCc-cccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcc
Confidence            87543  23466677899999888774 6889999999999999999999999999999999999999999999987654


Q ss_pred             ccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      ++...+. +++.....++....++ +|    ++.+|+++++. ++++|+||+||+||++|+++||++||++|+++|++||
T Consensus       160 ~~~~~p~~~~~~~~~~~~~~~~~~-~~----~~~le~~~~~~-~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~  233 (427)
T d2gsaa_         160 ATLGLPSSPGVPKKTTANTLTTPY-ND----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD  233 (427)
T ss_dssp             HHTTCCSCSSSCHHHHTTEEEECT-TC----HHHHHHHHTTS-TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTT
T ss_pred             cccCCCCCCCCcccCccceeccCc-ch----HHHHHHHHHhC-CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhc
Confidence            4433332 2333333333333333 23    67888888764 6799999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---CcccccCCCChHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGH  365 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~~~~~T~~~np~a~aaal  365 (447)
                      ++||+||||||| |+| ++|+++++|+.|||+|+||+++||+|+|++++++++++.+..   ..|++||++||++|++|+
T Consensus       234 ~llI~DEv~tG~-r~g-~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAal  311 (427)
T d2gsaa_         234 ALLVFDEVMTGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI  311 (427)
T ss_dssp             CEEEEECTTTBT-TTB-TTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred             eeeeeccccccc-eec-ccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHH
Confidence            999999999999 789 799999999999999999999999999999999999998865   347799999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCC
Q 013235          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGIC  440 (447)
Q Consensus       366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~G  440 (447)
                      ++|++++++++.+++++++++|+++|+++.++++....+++.|.|+++.+..++..     +..+.....++.+.|+++|
T Consensus       312 a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~G  391 (427)
T d2gsaa_         312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG  391 (427)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999998888888889999998654321     2234455678899999999


Q ss_pred             ceeec
Q 013235          441 ALFFS  445 (447)
Q Consensus       441 vlv~~  445 (447)
                      |++.+
T Consensus       392 v~l~p  396 (427)
T d2gsaa_         392 IYLAP  396 (427)
T ss_dssp             EECCS
T ss_pred             EEECC
Confidence            99864

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-70  Score=553.65  Aligned_cols=370  Identities=25%  Similarity=0.344  Sum_probs=309.8

Q ss_pred             HHHHHhhhcCCccccc-cCCCeE-EEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccc
Q 013235           63 ILAKRKTFLSPSLFHL-YSKPLN-VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYL  139 (447)
Q Consensus        63 ~~~~~~~~~~~~~~~~-~~~p~~-~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~  139 (447)
                      .+..+++|+++.+... ...|+. +++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.|... .+.
T Consensus         5 ~~~~d~~h~~~p~~~~~~~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~   84 (429)
T d1s0aa_           5 DLAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGIT   84 (429)
T ss_dssp             HHHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEE
T ss_pred             HHHHHHHhcCCCcccCCCCCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCcc
Confidence            3446677877654322 234554 8999999999999999999999999999999999999999999999887544 567


Q ss_pred             chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~  214 (447)
                      ++...+++++|.+..|.++++|+|++|||||+|.|+|+||.++     ++.+||+++++|||++.+++++++...++...
T Consensus        85 ~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~  164 (429)
T d1s0aa_          85 HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSL  164 (429)
T ss_dssp             CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGG
T ss_pred             chHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccc
Confidence            8889999999999999889999999999999999999999875     35689999999999999999999866554432


Q ss_pred             cC---CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc-CCCceeeCCCChHHHHHHHHHHhCCE
Q 013235          215 VQ---TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSIKKAGGL  290 (447)
Q Consensus       215 ~~---~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~-~~gG~~~~~~~~l~~l~~l~~~~g~l  290 (447)
                      ..   ......+.+....... .| ....+++++.+... ++++||||+||++ +.||++++|++||++|+++|++||++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gil  241 (429)
T d1s0aa_         165 WKGYLPENLFAPAPQSRMDGE-WD-ERDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL  241 (429)
T ss_dssp             GTTTSCCCEEECCCCSBC-CC-CC-GGGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred             cCccccccccccccccccccc-cc-hhhhhhhhhhhhhc-CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcc
Confidence            22   2233333322221111 12 22245566655544 4699999999987 77889999999999999999999999


Q ss_pred             EEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-----cccccCCCChHHHHHH
Q 013235          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAAG  364 (447)
Q Consensus       291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-----~~~~T~~~np~a~aaa  364 (447)
                      ||+|||||||||+| ++|+++++|+.|||+|+||+|+|| +|+|++++++++++.+...     .|.+||+|||++|++|
T Consensus       242 lI~DEV~tGfGRtG-~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa  320 (429)
T d1s0aa_         242 LIADEIATGFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA  320 (429)
T ss_dssp             EEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred             eehhhccccccccc-cccccccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhh
Confidence            99999999999999 799999999999999999999987 7999999999999988643     3679999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +++|++++++++.++++++|++|+++|+++. +++.+.+|||.|+|+++++..+.        ...++.+.|+++||++.
T Consensus       321 ~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~-~~~~v~~vrg~Gl~~~~e~~~~~--------~~~~~~~~~~~~Gl~~~  391 (429)
T d1s0aa_         321 NASLAILESGDWQQQVADIEVQLREQLAPAR-DAEMVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIR  391 (429)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHGGGG-GCTTEEEEEEETTEEEEEESSCB--------CHHHHHHHHHHTTEECC
T ss_pred             hccccccccccccchhhHHHHHHHHHHHHhc-cCCceEEEeecccEEEEEecCcc--------cHHHHHHHHHHCCcEEE
Confidence            9999999999999999999999999999985 57899999999999999996532        14578899999999986


Q ss_pred             c
Q 013235          445 S  445 (447)
Q Consensus       445 ~  445 (447)
                      +
T Consensus       392 ~  392 (429)
T d1s0aa_         392 P  392 (429)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.3e-69  Score=556.03  Aligned_cols=374  Identities=23%  Similarity=0.296  Sum_probs=303.9

Q ss_pred             CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235           54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (447)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~  133 (447)
                      .+|+|++++++++..++..+...   ..|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+.+|+++..+
T Consensus        11 ~~pgp~s~~l~~~~~~~~~~~~~---~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~   87 (461)
T d1ohwa_          11 EVPGPRSRELMKQLNIIQNAEAV---HFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF   87 (461)
T ss_dssp             CSSCHHHHHHHHHHHHHSCCTTC---CCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH
T ss_pred             CCCChHHHHHHHHHHHhcCCCCC---CCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhh
Confidence            47889999999998888766533   348999999999999999999999999999999999999999999999987654


Q ss_pred             ccc-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------------------------c
Q 013235          134 STV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------------------------T  182 (447)
Q Consensus       134 ~~~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------------------------t  182 (447)
                      ...     ..+.....+|+++|.+..+.++++|+|+||||||||.|||+||.|                          +
T Consensus        88 ~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
T d1ohwa_          88 INRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGC  167 (461)
T ss_dssp             HCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTS
T ss_pred             cccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCC
Confidence            322     122344567888888778888999999999999999999999876                          3


Q ss_pred             CCCeEEEEcCCcccCchhhhhccCCCCccccccC-CCeEeecCCCC-cCCCCCCC-----hHHHHHHHHHHHHc--cCCC
Q 013235          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDP-YRGVFGAD-----GEMYAKDVQDLIDF--GTSG  253 (447)
Q Consensus       183 ~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~-~g~~~~~~p~~-~~~~~~~d-----~~~~~~~le~~i~~--~~~~  253 (447)
                      ++.+||+++++|||++.+++++|+.+.++..... ......+.+.. +...+..+     .....+++++++..  ..++
T Consensus       168 ~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  247 (461)
T d1ohwa_         168 PDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK  247 (461)
T ss_dssp             CCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCC
Confidence            4668999999999999999999987654433222 22222222111 11111000     11234566666542  2467


Q ss_pred             CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC--CCCEEEeeccccCCcc
Q 013235          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIP  331 (447)
Q Consensus       254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv--~pDivt~sK~lg~G~p  331 (447)
                      ++||||+||+||++|++++|++||++|+++|++||++||+||||||||||| ++|+++++|+  .|||+|+||+++||.+
T Consensus       248 ~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG-~~~~~e~~gi~~~PDiv~~gK~l~~g~~  326 (461)
T d1ohwa_         248 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGF  326 (461)
T ss_dssp             CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTS-SSSGGGGGCCSSCCSEEEECGGGSSEEE
T ss_pred             ccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccc-ccccccccccccCchhhhhhhccccccc
Confidence            999999999999999999999999999999999999999999999999999 7999999998  4999999999998754


Q ss_pred             -ccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecce
Q 013235          332 -LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGF  409 (447)
Q Consensus       332 -igav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl  409 (447)
                       .++++..      .....+.+||++||++|++|+++|++++++++++++++++++|+++|+++.++++ .+++|||.|+
T Consensus       327 ~~~~~~~~------~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl  400 (461)
T d1ohwa_         327 FHKEEFRP------NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT  400 (461)
T ss_dssp             EECGGGSC------SSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred             cccccccc------ccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeE
Confidence             4433322      1234578999999999999999999999999999999999999999999999995 7899999999


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |++|++.        +...+.++++.|+++||++..
T Consensus       401 ~~~ie~~--------~~~~~~~i~~~~~~~Gll~~~  428 (461)
T d1ohwa_         401 FCSFDTP--------DESIRNKLISIARNKGVMLGG  428 (461)
T ss_dssp             EEEEECS--------SHHHHHHHHHHHHHTTEECEE
T ss_pred             EEEEEcC--------CHHHHHHHHHHHHHCCeEEee
Confidence            9999984        345677899999999999864

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=1.7e-68  Score=541.35  Aligned_cols=358  Identities=27%  Similarity=0.436  Sum_probs=290.6

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (447)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~  138 (447)
                      +.+++++...+|.+..   |.+.|++|++++|.||||.|||+||||.+|+++++|||+||+|++|+++|++++.+.+..+
T Consensus         2 ~~~~~~~~~~~~~~~~---y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~   78 (404)
T d1z7da1           2 TPEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAF   78 (404)
T ss_dssp             CHHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTS
T ss_pred             CHHHHHHHHHhcCCCC---CCCCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCccccc
Confidence            3578888888898775   4456999999999999999999999999999999999999999999999999987765555


Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC--------CCeEEEEcCCcccCchhhhhccCCCCc
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG--------CNDIISLRNAYHGNAAGTMGATAQSNW  210 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~--------~~~ii~~~~~yHG~~~~~~~~t~~~~~  210 (447)
                      .+....++++.+.+. ++ .+.++|++||++|++.|+|++|.++.        +.+++.+.++|||.+..+.+.++...+
T Consensus        79 ~~~~~~~~~~~~~~~-~~-~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~  156 (404)
T d1z7da1          79 FSVPLGICERYLTNL-LG-YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKC  156 (404)
T ss_dssp             EEHHHHHHHHHHHHH-HT-CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-----------------
T ss_pred             chHHHHHHHHhhhhc-cc-cceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccccccccccc
Confidence            455555555555554 43 57899999999999999999998753        357999999999999999988776554


Q ss_pred             cccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235          211 KFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (447)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g  288 (447)
                      +....+  ..+.+.+.         ++    .+.++..+.   ++++||||+||+||++|++++|++||++|+++|++||
T Consensus       157 ~~~~~~~~~~~~~~~~---------~~----~~~l~~~~~---~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g  220 (404)
T d1z7da1         157 TSNFGPFAPQFSKVPY---------DD----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYN  220 (404)
T ss_dssp             ---------CEEEECT---------TC----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred             ccCCCCCCcccccccc---------ch----HHHHHHHhc---CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcC
Confidence            433211  23333332         12    344554443   5689999999999999999999999999999999999


Q ss_pred             CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHH
Q 013235          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (447)
Q Consensus       289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~  367 (447)
                      ++||+|||||||||+| .+|+++++|+.|||+|+||+|+|| +|+|++++++++++.+....+++||+|||++|+||+++
T Consensus       221 ~llI~DEV~tGfgRtG-~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~  299 (404)
T d1z7da1         221 VLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEA  299 (404)
T ss_dssp             CEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHH
T ss_pred             CEEEEEcCccCCCccc-ccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhh
Confidence            9999999999999999 799999999999999999999998 79999999999999998888999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      |++++++++.+++.+++++++++|.++.++++.+.+|||.|+|++++|.++...       ..++.++|+++||++.+
T Consensus       300 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~-------~~~~~~~l~~~Gl~~~~  370 (404)
T d1z7da1         300 LNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVN-------VLDICLKLKENGLITRD  370 (404)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCC-------HHHHHHHHHHTTEECCE
T ss_pred             hhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCccc-------HHHHHHHHHhCCeEEec
Confidence            999999999999999999999999999999999999999999999999765321       45688899999999853

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-32  Score=276.37  Aligned_cols=317  Identities=15%  Similarity=0.193  Sum_probs=232.0

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCC-CHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHH
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALA  151 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~  151 (447)
                      .|+...++.+++|+++||.||++||||+++.+   ||+. ||+|++|+++++++++..+.     ....+.+.+|+++|+
T Consensus        24 ~~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA  100 (401)
T d1fc4a_          24 LFKEERIITSAQQADITVADGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA  100 (401)
T ss_dssp             CCCCCCCBCSCSSSEEEBTTSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred             CCCcceeccCCCCCeEEecCCCEEEEEEcccc---ccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHH
Confidence            34556678899999999999999999987653   6765 99999999999998754322     124677889999999


Q ss_pred             HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      +++  +.+.++++|||++||..+++.   +.++.++|+.+...|.+....+..+....++          ++.       
T Consensus       101 ~~~--g~e~al~~~SG~~An~~~i~~---l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~----------~~~-------  158 (401)
T d1fc4a_         101 AFL--GMEDAILYSSCFDANGGLFET---LLGAEDAIISDALNHASIIDGVRLCKAKRYR----------YAN-------  158 (401)
T ss_dssp             HHH--TCSEEEEESCHHHHHHTTHHH---HCCTTCEEEEETTCCHHHHHHHHTSCSEEEE----------ECT-------
T ss_pred             Hhh--cCCceEEecchhhhhHHHHHH---hcCCCcEEEeCCcchHHHHccccccCceEEE----------EcC-------
Confidence            998  467899999999999999974   3456666666666666665544443322111          111       


Q ss_pred             CCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcc-
Q 013235          232 FGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW-  308 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~-  308 (447)
                        +|    .++++++++..  ...+.+++++|+++++.|.+.+    |++|++||++||++||+||+|+++ ..|.... 
T Consensus       159 --~d----~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g-~~g~~G~G  227 (401)
T d1fc4a_         159 --ND----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVG-FVGENGRG  227 (401)
T ss_dssp             --TC----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTT-TSSTTSCC
T ss_pred             --CC----hHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccc-cccCCCCc
Confidence              34    34444444321  2346689999999999998887    999999999999999999999753 4442222 


Q ss_pred             cccccCC--CCCEE--EeeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhh-hhHHHHHH
Q 013235          309 GFEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAH  381 (447)
Q Consensus       309 ~~~~~gv--~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~  381 (447)
                      ..+++++  .+|++  |++|+++ |.+.|++++++++++.+...  .+..+.+.+|..+++++++++.+.+ ++++++++
T Consensus       228 ~~~~~~~~~~~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~  306 (401)
T d1fc4a_         228 SHEYCDVMGRVDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLW  306 (401)
T ss_dssp             HHHHTTCTTCCSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchhccCCCCCeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHH
Confidence            3466776  45666  7999995 56678899999999988643  3445666789999999999998764 56789999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ++.++|++.+.+..  ++.   ....+.++.|.+.+        ...+.++.++|+++||++.
T Consensus       307 ~~~~~~~~~l~~~g--~~~---~~~~~pIv~v~~~~--------~~~a~~~~~~L~~~Gi~v~  356 (401)
T d1fc4a_         307 ANARQFREQMSAAG--FTL---AGADHAIIPVMLGD--------AVVAQKFARELQKEGIYVT  356 (401)
T ss_dssp             HHHHHHHHHHHHTT--CCB---CCSSSSEEEEEEEC--------HHHHHHHHHHHHHTTEECC
T ss_pred             HHHHHHHhhhcccC--Ccc---CCCCCCEEEEEECC--------HHHHHHHHHHHHHCCceEE
Confidence            99999999888762  221   12234566666643        3456789999999999975

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-29  Score=253.68  Aligned_cols=314  Identities=15%  Similarity=0.179  Sum_probs=234.4

Q ss_pred             ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccc---c--cccchHHHHHHHHHH
Q 013235           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST---V--LYLNHAIADFAEALA  151 (447)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~---~--~~~~~~~~elae~L~  151 (447)
                      .++.+..+.+++|.|+. .||++||||+++.+   ||. .||+|++|+.+++++++..+   .  .+..+.+.+|+++|+
T Consensus        18 ~~~~~~~~~~~~g~~i~-~~g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA   93 (383)
T d1bs0a_          18 ALRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELA   93 (383)
T ss_dssp             CCCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHH
T ss_pred             CCccccccCCCCCCeEE-ECCeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHH
Confidence            34556667899999995 99999999988654   555 49999999999999874321   1  245788899999999


Q ss_pred             HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235          152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (447)
Q Consensus       152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (447)
                      +++  +.+.+++++||+.||..++.   .+.++.++++.+...|.........+......          .+.       
T Consensus        94 ~~~--g~e~al~~~SG~~an~~~i~---al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~----------~~h-------  151 (383)
T d1bs0a_          94 EWL--GYSRALLFISGFAANQAVIA---AMMAKEDRIAADRLSHASLLEAASLSPSQLRR----------FAH-------  151 (383)
T ss_dssp             HHH--TCSEEEEESCHHHHHHHHHH---HHCCTTCEEEEETTCCHHHHHHHHTSSSEEEE----------ECT-------
T ss_pred             Hhc--CCCceEEecccchhhHHHHH---hhcCCCceEEeeccccHHHhhccccCCCcceE----------ecc-------
Confidence            999  45788999999999999997   45577888888888998887766554332111          111       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-c
Q 013235          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-F  310 (447)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~  310 (447)
                        +|    .+++++.+....+ +...|++|++.+++|.+.|    +++|.++|++||++||+||+|+ +|-.|....+ .
T Consensus       152 --nd----~~~le~~l~~~~~-~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~  219 (383)
T d1bs0a_         152 --ND----VTHLARLLASPCP-GQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSC  219 (383)
T ss_dssp             --TC----HHHHHHHHHSCCS-SCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHH
T ss_pred             --hH----HHHHHHHhcccCC-CceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchH
Confidence              44    6778888876544 5578999999999999988    9999999999999999999996 4433422223 4


Q ss_pred             cccCCCCCEEE--eeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHH
Q 013235          311 EAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVV  383 (447)
Q Consensus       311 ~~~gv~pDivt--~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~  383 (447)
                      +++++.+|+++  +||++|  .+.|+++++.++++.+...  .+..+...+|..+++++++++.+++.   ..+++.+++
T Consensus       220 ~~~~~~~~~~~~t~~ka~g--~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~  297 (383)
T d1bs0a_         220 WLQKVKPELLVVTFGKGFG--VSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAAL  297 (383)
T ss_dssp             HHTTCCCSEEEEESSSTTS--SCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             HHcCCcccccccccccccc--ccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            88899999886  556554  4567899999999988653  35567778899999999999988754   355666677


Q ss_pred             HHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      ..++++.|.++    +. .-+.+...++.|.+.        ++..+.++.+.|+++||++.
T Consensus       298 ~~~~~~~l~~~----g~-~~~~~~s~Ii~v~~g--------~~~~a~~~~~~L~~~Gi~v~  345 (383)
T d1bs0a_         298 ITRFRAGVQDL----PF-TLADSCSAIQPLIVG--------DNSRALQLAEKLRQQGCWVT  345 (383)
T ss_dssp             HHHHHHHHTTS----SC-EECSCCSSBCCEEEE--------SHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHHHHHHhc----CC-ccCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCceEE
Confidence            77777777554    21 112344555566553        23457789999999999985

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.94  E-value=4.3e-25  Score=219.90  Aligned_cols=318  Identities=18%  Similarity=0.199  Sum_probs=228.3

Q ss_pred             cCCCeEEEeecccEE------EecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc--c---cccchHHHHHH
Q 013235           79 YSKPLNVVDGKMQYL------FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST--V---LYLNHAIADFA  147 (447)
Q Consensus        79 ~~~p~~~~~g~G~~l------~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~--~---~~~~~~~~ela  147 (447)
                      |+....+.+..|.+.      .+.++++++||+|+.+ ..|. .||+|++|+.+.+++++..+  .   ....+.+.+|+
T Consensus        19 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndY-LGL~-~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE   96 (396)
T d2bwna1          19 YRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDY-LGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLE   96 (396)
T ss_dssp             CCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCT-TSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHH
T ss_pred             CccccccccccCCCCcceEeecCCCCeEEEEEEcccc-cCcC-CCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHH
Confidence            344445666666531      2335689999998765 3344 59999999999999875322  1   23467888999


Q ss_pred             HHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC
Q 013235          148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP  227 (447)
Q Consensus       148 e~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~  227 (447)
                      ++|++++.  .+.+++++||..||..++..... .++.++|..+.-.|......+.+++....++.+             
T Consensus        97 ~~lA~~~g--~e~all~~sG~~An~~~i~~l~~-~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H-------------  160 (396)
T d2bwna1          97 AEIAGLHQ--KEAALVFSSAYNANDATLSTLRV-LFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH-------------  160 (396)
T ss_dssp             HHHHHHTT--CSEEEEESCHHHHHHHHHHHHHH-HSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT-------------
T ss_pred             HHHHHHhC--CCceeeeecchHHHHHHHHHHhc-ccCCCceeehhhhhhccchhhhccccCceEeec-------------
Confidence            99999994  57788999999999999975422 256788888999998877776666543322221             


Q ss_pred             cCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc
Q 013235          228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF  307 (447)
Q Consensus       228 ~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~  307 (447)
                            +|    .+++++++....+.+...|++|.+.++.|.+.|    |++|.+||++||+.||+||++ |||-.|+..
T Consensus       161 ------nd----~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAH-s~Gv~G~~G  225 (396)
T d2bwna1         161 ------ND----VAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVH-AVGMYGPRG  225 (396)
T ss_dssp             ------TC----HHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTT-TTTTSSTTS
T ss_pred             ------ch----HHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccce-eeeeecccc
Confidence                  45    566777777666667778999999999999998    999999999999999999999 576655432


Q ss_pred             ccc-cccCC--CCCEE--EeeccccC-CccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhhh---hH
Q 013235          308 WGF-EAHGV--VPDIV--TMAKGIGN-GIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKD---KL  376 (447)
Q Consensus       308 ~~~-~~~gv--~pDiv--t~sK~lg~-G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~~---~l  376 (447)
                      .+. +++++  ..||+  ||||++|. |   |+|++++++++.+....  +..+-+.+|..+++++++++++..+   .+
T Consensus       226 ~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~  302 (396)
T d2bwna1         226 AGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKL  302 (396)
T ss_dssp             CCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             ccchhhcCCceeeeeeeecccccccccc---cccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHH
Confidence            233 56666  34776  79999984 4   56889999999987543  3344455688888889999988643   34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          377 QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       377 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +++.+.+.+++++.|.++  .+++.   .....++.|.+.        ++..+.++.++|+ ++||++..
T Consensus       303 r~~l~~~~~~~~~~l~~~--g~~~~---~~~spIvpv~ig--------~~~~~~~~a~~lL~e~Gi~v~~  359 (396)
T d2bwna1         303 RDAQQMHAKVLKMRLKAL--GMPII---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQP  359 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHH--TCCBC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCE
T ss_pred             HHHHHHHHHHHHHHHHhc--CCCcC---CCCCCEEEEEeC--------CHHHHHHHHHHHHHhCCEEEEE
Confidence            566777888888888776  33322   123455556552        2345677888866 68998853

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=9.7e-22  Score=195.37  Aligned_cols=311  Identities=14%  Similarity=0.077  Sum_probs=190.1

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHH----hC--CCCCceEEEcCCHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALAS----KM--PGNLKVVFFTNSGT  168 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~----~~--~~~~~~v~~~~sGs  168 (447)
                      .+|+.+|||..|..  .+. .+|.|.+|+.+.++...   ..|. .....+|.+.+++    ..  +.+.++|+++++++
T Consensus        28 ~~G~~vi~l~~g~p--~~~-~p~~i~~a~~~~~~~~~---~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~  101 (382)
T d1b5pa_          28 RQGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGK---TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGS  101 (382)
T ss_dssp             HTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred             hCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCC---cCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHH
Confidence            45778899988765  334 57899999999887632   2232 2223444444444    33  33467899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|+..+++...  ..++.|++.+++|.+....+...             |...+..|......|..|    ++++++.+.
T Consensus       102 ~al~~~~~~l~--~~gd~vl~~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~  162 (382)
T d1b5pa_         102 QALFNLFQAIL--DPGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT  162 (382)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCcHHHHHHHHHh-------------cCeEEEEecccccccCCC----HHHHHHhCC
Confidence            99999998543  24578999999998765544332             222222222222234344    455554432


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecc
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKG  325 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~  325 (447)
                         ++..+.++..| ++++|.+. +.+.+++|.++|++||+++|.||+|..|...|.+.-....  ....++   ++||.
T Consensus       163 ---~~~~~i~~~~P-~NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~  235 (382)
T d1b5pa_         163 ---PRTKALVVNSP-NNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAKA  235 (382)
T ss_dssp             ---TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEESTTT
T ss_pred             ---CCCeEEEECCC-CCCcchhC-CHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecchhh
Confidence               33345566667 66677664 7889999999999999999999999998776642221111  111233   58999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~-i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      ++ .|+++||+++++++++.+.......+.+.+.....++.+.+.. ...+.+.+..++.-+..++.+.+.....++...
T Consensus       236 ~~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  315 (382)
T d1b5pa_         236 FAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAV  315 (382)
T ss_dssp             TTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred             ccCcHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEe
Confidence            98 8999999999999988775433334445555555555444431 112223333333322233333333333343222


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+..|+++++++....    .   ....+.+.|+++||++.+
T Consensus       316 ~p~gg~~~~~~~~~~~----~---~~~~~~~~l~e~gV~v~P  350 (382)
T d1b5pa_         316 RPSGAFYVLMDTSPIA----P---DEVRAAERLLEAGVAVVP  350 (382)
T ss_dssp             CCSBTTEEEEECTTTC----S---SHHHHHHHHHHTTEECEE
T ss_pred             cCCceEEEeEeCCCCC----C---CHHHHHHHHHHCCEEEEe
Confidence            3445788888873211    1   135677889999999875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=3.2e-21  Score=191.65  Aligned_cols=307  Identities=12%  Similarity=0.093  Sum_probs=189.7

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC-------CCCCceEEEcCCHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM-------PGNLKVVFFTNSGTEA  170 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~-------~~~~~~v~~~~sGseA  170 (447)
                      +.+|||..|..  .++ .++.|.+++.+.++...   ..|. .....+|.+.|++++       ....++|+++++++++
T Consensus        25 ~dvi~l~~g~p--~~~-~p~~v~~~~~~a~~~~~---~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~   98 (388)
T d1gdea_          25 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGL---THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA   98 (388)
T ss_dssp             TTCEECCCCSC--CSC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred             CCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCc---cCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchH
Confidence            45789887765  344 57899999999887631   2233 223455555555543       1234579999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..++....  ..++.|++.+++|.+....+...             |...+..|......|+.|    .++|++.+.  
T Consensus        99 l~~~~~~l~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~~~--  157 (388)
T d1gdea_          99 FLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILA-------------GGKPVEVPTYEEDEFRLN----VDELKKYVT--  157 (388)
T ss_dssp             HHHHHTTTC--CTTCEEEEEESCCTTHHHHHHHH-------------TCEEEEEECCGGGTTCCC----HHHHHHHCC--
T ss_pred             HHHHHHHhc--CCCCEEEECCCCcHHHHHHHHHc-------------CCEEEEeecccccCCCCC----HHHHHHhCc--
Confidence            999886432  35688999999998776555443             222233332223345455    566776653  


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC-EE---Eeeccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-IV---TMAKGI  326 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD-iv---t~sK~l  326 (447)
                       ++....++..| ++++|.+. +++.+++|.++|++||+++|.||+|..|...+...-........+| ++   +|||.+
T Consensus       158 -~~~~~i~~~~P-~NPtG~~~-s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  234 (388)
T d1gdea_         158 -DKTRALIINSP-CNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF  234 (388)
T ss_dssp             -TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT
T ss_pred             -cCCeEEEECCC-cCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc
Confidence             22345555566 56677665 7889999999999999999999999988665533322322322233 33   689999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHhcCCee
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE---RLTALKDKYGIIG  402 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~---~L~~l~~~~~~i~  402 (447)
                      + .|+++|++++++++++.+.......+++.+.+...++.++|+   +++..+++.+..+.+.+   .+.+...+.....
T Consensus       235 ~~~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  311 (388)
T d1gdea_         235 AMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALK---DERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPT  311 (388)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cCccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHh---hccchhHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            8 799999999999988877654444556666666666666553   33333333322222222   2222223333322


Q ss_pred             eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ..+..|+++++++.+...       ...++++.|+ +.||++.+
T Consensus       312 ~~p~gg~fl~~~l~~~~~-------~~~~~~~~ll~e~gV~v~P  348 (388)
T d1gdea_         312 VKPKGAFYIFPRIRDTGL-------TSKKFSELMLKEARVAVVP  348 (388)
T ss_dssp             CCCCBTTEECCBCGGGTC-------CHHHHHHHHHHHTCEECEE
T ss_pred             cCCCceEEEEEECCCCCC-------CHHHHHHHHHHhCCEEEEe
Confidence            234457788887742110       1346777665 57999864

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.86  E-value=4.3e-22  Score=203.09  Aligned_cols=295  Identities=16%  Similarity=0.155  Sum_probs=186.7

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~A  174 (447)
                      ..++.+|||.+..++..++|.++   .+    +... .  ..| .++...+|++++++++  +.+.++|++||++||+.|
T Consensus        39 ~~~~~~id~~sd~~t~~~~~~~~---a~----~~~g-d--~~y~~~~~~~~le~~~a~l~--g~~~~~~~~sGt~A~~~a  106 (465)
T d1ax4a_          39 PSSAVYIDLLTDSGTNAMSDHQW---AA----MITG-D--EAYAGSRNYYDLKDKAKELF--NYDYIIPAHQGRGAENIL  106 (465)
T ss_dssp             CGGGCSEECSCSSSCCCEEHHHH---HH----HHTC-C--CCSSSCHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHH
T ss_pred             CccCeeeecccccchhhhhHHHH---HH----Hhhh-h--hhhccChHHHHHHHHHHHHH--CCCEEEECCCcHHHHHHH
Confidence            35778999999888766654322   22    2221 1  123 3677789999999998  468899999999999999


Q ss_pred             HHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          175 IMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       175 ik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      +++++.+.     .+..++  .+.+|+.+..+.......... ............+++..  +..|    .++++++|..
T Consensus       107 ~~~~~~~g~~~~~~~~~~i--~~~~h~~t~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--~~~d----~~~l~~~i~~  177 (465)
T d1ax4a_         107 FPVLLKYKQKEGKAKNPVF--ISNFHFDTTAAHVELNGCKAI-NIVTEKAFDSETYDDWK--GDFD----IKKLKENIAQ  177 (465)
T ss_dssp             HHHHHHHHHHTTCCSSCEE--EESSCCHHHHHHHHHTTCEEE-ECBCGGGGCTTSCCTTT--TCBC----HHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCeEE--eccchhhhhHHHHHHcCCeee-cccccccCCCCCCCCcc--CccC----HHHHHHHHHh
Confidence            99998653     122333  356777766554332211000 00000000000011111  1224    6788888877


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc------CccccCCCcccccccCCC------C
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA------GFARTGSHFWGFEAHGVV------P  317 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t------Gfgr~G~~~~~~~~~gv~------p  317 (447)
                      ..++.++++++|++++.+|..+++.++|++|+++|++||++||+||+|+      +++|++ .+|+.+..++.      .
T Consensus       178 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~  256 (465)
T d1ax4a_         178 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP-KYKNATIKEVIFDMYKYA  256 (465)
T ss_dssp             HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCG-GGTTCCHHHHHHHHGGGC
T ss_pred             hccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccc-cccccchhhhcccccccc
Confidence            6667899999999999999999999999999999999999999999987      345555 45555444333      5


Q ss_pred             CEEEeeccccCCccc-cccccCHH--HHHhhcC----CcccccCCCChHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHH
Q 013235          318 DIVTMAKGIGNGIPL-GAVVTTPE--IAEVLTR----RNYFNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGSYLKE  389 (447)
Q Consensus       318 Divt~sK~lg~G~pi-gav~~~~~--i~~~l~~----~~~~~T~~~np~a~aaala-~L~~i~~~~l~~~~~~~g~~l~~  389 (447)
                      |+++++|..++|.|. |+++++++  +.+....    ..+..++++....+.++.+ .+.....+++.++..+..++|.+
T Consensus       257 d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~  336 (465)
T d1ax4a_         257 DALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGD  336 (465)
T ss_dssp             SEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHH
Confidence            788999988876554 45555532  2222211    1233455554444444333 34444456677777888899999


Q ss_pred             HHHHHHHhcCCeeeEeecceeEEEE
Q 013235          390 RLTALKDKYGIIGDVRGRGFLLGVE  414 (447)
Q Consensus       390 ~L~~l~~~~~~i~~vrg~Gl~~gie  414 (447)
                      +|+++  ..+.+...++.++++.++
T Consensus       337 ~L~~~--g~~~v~~~~~~~~~~~~~  359 (465)
T d1ax4a_         337 RLREA--GIPIQYPTGGHAVFVDCK  359 (465)
T ss_dssp             HHHHT--TCCBCSSCCSSEEEEEST
T ss_pred             HHHhh--cCccccCCCcceeeeehh
Confidence            99886  455566666666555443

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.86  E-value=1e-20  Score=188.51  Aligned_cols=310  Identities=10%  Similarity=0.043  Sum_probs=189.1

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccccchHHHHHHHHHHHhC--CCCCceEEEcCCHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKM--PGNLKVVFFTNSGTEAN  171 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~~~~~~elae~L~~~~--~~~~~~v~~~~sGseA~  171 (447)
                      .+|+.+|||..|..  .+. .+|.|.+|+++.++...+  +...+..+.+..+++.+.+..  +...++|++++++++|+
T Consensus        27 ~~g~~vi~l~~G~p--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al  103 (388)
T d1j32a_          27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             HCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence            34667899987764  333 578999999998876321  111111223334444444432  34567899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      ..+++...  .+++.|++.+++|.+........             +...+..|......|..|    .+++++.+.   
T Consensus       104 ~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~d----~~~l~~~~~---  161 (388)
T d1j32a_         104 FNLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT---  161 (388)
T ss_dssp             HHHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC---
T ss_pred             HHHHHHHh--CCCCEEEEcCCCcHHHHHHHHHh-------------cCeEEEEecccccccCCC----HHHHHHhCC---
Confidence            99987542  35688999999997665433222             222333333333344445    566666553   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-----CCCCCEEEeeccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-----GVVPDIVTMAKGI  326 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-----gv~pDivt~sK~l  326 (447)
                      ++..+.++..| ++++|.+. +++.+++|.++|+++|+++|.||+|..+...+...-.....     +..--+-+|||.+
T Consensus       162 ~~~~~~~~~~P-~NPTG~~~-~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  239 (388)
T d1j32a_         162 PKTKLLVFNTP-SNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY  239 (388)
T ss_dssp             TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred             CCCeEEEECCC-CCCCCccc-chhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh
Confidence            33455666777 56777665 78999999999999999999999998876655322211111     1111123689999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHhcCCe
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDKYGII  401 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~~~~i  401 (447)
                      + .|+|+||+++++++++.+.......+.+.+..++.++...++..  ++..    +..++..+.+.+.|    ++++.+
T Consensus       240 ~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l----~~~~g~  313 (388)
T d1j32a_         240 AMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDAL----NAMPGL  313 (388)
T ss_dssp             TCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHH----HTCTTC
T ss_pred             hcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccch--HHHHHHHHHHHHHHHHHHHHHH----HhCCCC
Confidence            8 79999999999999987765433345566677777766666422  2222    22333333333333    333333


Q ss_pred             ee-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          402 GD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       402 ~~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .- .+..|+++++++.....       ...+++++|+ +.||.+.+
T Consensus       314 ~~~~p~gg~~l~~~l~~~~~-------~~~~~~~~ll~~~gV~v~p  352 (388)
T d1j32a_         314 ECPKPDGAFYMFPSIAKTGR-------SSLDFCSELLDQHQVATVP  352 (388)
T ss_dssp             BCCCCCBTTEECCBCGGGTC-------CHHHHHHHHHHHHCEECEE
T ss_pred             EecCCCceEEEEEECCCCCC-------CHHHHHHHHHHhCCEEEEe
Confidence            32 23447777777632210       1245777765 56999864

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.85  E-value=1.2e-20  Score=185.38  Aligned_cols=295  Identities=15%  Similarity=0.107  Sum_probs=190.0

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      ....+|||++|..  ++| .+|.+.+|+.+++..+    ..|+++...+|.+.|++++..+.++|++++++++++..++.
T Consensus        20 ~p~~~idls~~~n--p~~-~p~~~~~a~~~~~~~~----~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~   92 (355)
T d1lc5a_          20 SPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCI----ERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS   92 (355)
T ss_dssp             CGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             ChhheEEccCCCC--CCC-CCHHHHHHHHHHHHHh----ccCCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHh
Confidence            3446899988654  678 5789999999887765    23666666789999999998777889999999888877665


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ..    .+..+++..+.|+..........           .++..++.+..  ..|..+     +.+++.   ..++..+
T Consensus        93 ~~----~~~~~~v~~p~~~~~~~~~~~~~-----------~~~~~v~~~~~--~~~~~~-----~~~~~~---~~~~~~~  147 (355)
T d1lc5a_          93 GL----KPRRAMIVTPGFAEYGRALAQSG-----------CEIRRWSLREA--DGWQLT-----DAILEA---LTPDLDC  147 (355)
T ss_dssp             HH----CCSEEEEEESCCTHHHHHHHHTT-----------CEEEEEECCGG--GTTCCC-----TTHHHH---CCTTCCE
T ss_pred             hh----ccccccccCCccceecccccccc-----------ccceeeeeecc--CCccce-----eeeeec---cccccce
Confidence            32    34555667777765443332221           12333433221  122222     122222   2233334


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCccc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  332 (447)
                      .+|+.| ++++|.+. +.+.+++|.++|++|++++|.||++..|...+....  ......+.++   ++||.++ .|+++
T Consensus       148 v~l~nP-~NPtG~~~-~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~--~~~~~~~~~i~~~S~SK~~~l~GlR~  223 (355)
T d1lc5a_         148 LFLCTP-NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI--PALKDNPHIWVLRSLTKFYAIPGLRL  223 (355)
T ss_dssp             EEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG--GGCTTCTTEEEEEESTTTTTCTTTCC
T ss_pred             eeeecc-cCcccccc-hhhhhhhhhhhccccccccccccceeeeeeeccccc--ccccccccceeecccccccccccccc
Confidence            555555 67777755 789999999999999999999999998876553221  1122233333   6899999 89999


Q ss_pred             cccccCHH-HHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHhcCCeeeEeecc
Q 013235          333 GAVVTTPE-IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (447)
Q Consensus       333 gav~~~~~-i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G  408 (447)
                      |+++++.+ +.+.+.  .+..++..+.+++.++.++|+.  .+.+   .+.+++..+++.+.|.    +.+.+.-.++.|
T Consensus       224 G~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~p~~~  295 (355)
T d1lc5a_         224 GYLVNSDDAAMARMR--RQQMPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALC----QLPLLTVYPGRA  295 (355)
T ss_dssp             EEEECCCHHHHHHHH--HHSCTTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHH----TSTTEEECCCSS
T ss_pred             cceeccchhhhHHHH--hhcCCccccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHh----hcCCcEECCCCC
Confidence            99998765 444443  2345678888988888887752  1122   2233333333333333    334454456778


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .++.+++..+          ..++++.|+++||++++
T Consensus       296 ~f~~~~~~~~----------~~~~~~~L~~~gv~vr~  322 (355)
T d1lc5a_         296 NYLLLRCERE----------DIDLQRRLLTQRILIRS  322 (355)
T ss_dssp             SEEEEEESCT----------TCCHHHHHHTTTEECEE
T ss_pred             EEEEEECCCC----------HHHHHHHHHHCCcEEEe
Confidence            8888887432          13578889999999975

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=1.2e-19  Score=179.01  Aligned_cols=302  Identities=14%  Similarity=0.101  Sum_probs=191.5

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      .||+..|..  .+. .+|.+++|+.+.++..    ..|+.+ ...+|.+.+++++..+.++|+++++++|++..+++...
T Consensus        27 ~I~ls~g~p--~~~-~p~~i~~al~~~l~~~----~~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~   99 (368)
T d1v2da_          27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV   99 (368)
T ss_dssp             CEECCCCSC--SSC-CCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             CEEecCCCC--CCC-CCHHHHHHHHHHhhcc----cCCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc
Confidence            488776654  233 5789999999887653    235433 46789999999988888899999999999999997543


Q ss_pred             hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (447)
Q Consensus       180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi  259 (447)
                        .+.+.|++.+++|+...........           .+..++.+. ....|..|    .+++++.+.   ++....++
T Consensus       100 --~~~d~v~~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~-~~~~~~~d----~~~l~~~~~---~~~~~i~~  158 (368)
T d1v2da_         100 --GPGDEVVVLEPFFDVYLPDAFLAGA-----------KARLVRLDL-TPEGFRLD----LSALEKALT---PRTRALLL  158 (368)
T ss_dssp             --CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECEE-ETTEEECC----HHHHHTTCC---TTEEEEEE
T ss_pred             --cccccccccCCcchhhhhHHHhcCC-----------ccceecccc-ccccccCC----HHHHHHhhc---cCceEEEE
Confidence              2567888889998866654443321           112222111 11112233    455555543   33445566


Q ss_pred             EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc--cCCCCCEEEeecccc-CCccccccc
Q 013235          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA--HGVVPDIVTMAKGIG-NGIPLGAVV  336 (447)
Q Consensus       260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~--~gv~pDivt~sK~lg-~G~pigav~  336 (447)
                      +.| ++++|.+. +.+.+++|.++|++||+++|.||++..+..... ......  .+..-.+.++||.++ .|+++|+++
T Consensus       159 ~~p-~NPtG~~~-~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~  235 (368)
T d1v2da_         159 NTP-MNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYYGER-PRRLREFAPERTFTVGSAGKRLEATGYRVGWIV  235 (368)
T ss_dssp             ESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred             cCC-CCcccccC-CHHHHHHHHHHHHHcCCeeeechhhhhhccccc-ccccccccccccceeeccccccccccccccccc
Confidence            666 56677665 788899999999999999999999976544331 111111  111223446888777 589999999


Q ss_pred             cCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEe
Q 013235          337 TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV  416 (447)
Q Consensus       337 ~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~  416 (447)
                      .++++++.+.......+++.++..+.++.++|...+..++.+++++.-+.-++.+.+..++++.....+..|+++++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~  315 (368)
T d1v2da_         236 GPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELP  315 (368)
T ss_dssp             CCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECT
T ss_pred             ccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCC
Confidence            99999887776555567777888877777777655544454444433333333344444444432222333678888762


Q ss_pred             eCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          417 TDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       417 ~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..            ...+.|.++||++.+
T Consensus       316 ~~------------~~~~ll~~~gI~v~p  332 (368)
T d1v2da_         316 GW------------DAFRLVEEARVALIP  332 (368)
T ss_dssp             TC------------CHHHHHHHTCEECEE
T ss_pred             cc------------HHHHHHHhCCEEEEe
Confidence            11            122346688999864

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.82  E-value=9.6e-20  Score=181.85  Aligned_cols=319  Identities=11%  Similarity=0.060  Sum_probs=184.2

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-----cccccccchHHHHHHHHHHHhC--CCCCceEEEcCCHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-----HSTVLYLNHAIADFAEALASKM--PGNLKVVFFTNSGTEA  170 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-----~~~~~~~~~~~~elae~L~~~~--~~~~~~v~~~~sGseA  170 (447)
                      +..+|||..|.....+ ...+.+.+++.+.++...     ++...+..+....+++.+.+..  +.+.++|+++++++++
T Consensus        28 ~~~~i~l~~G~P~~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~a  106 (403)
T d1wsta1          28 TSDVISLAGGLPAPET-FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQA  106 (403)
T ss_dssp             SSSCEECCCCCCCGGG-SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHH
T ss_pred             CCCcEECCCCCCCccc-cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHH
Confidence            3346788665432211 123466667766665432     2222222333344455554433  3456889999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..+++...  ..++.|++.+++|...........             ...+..|....+   .+........++.....
T Consensus       107 l~~~~~~l~--~~gd~v~~~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~  168 (403)
T d1wsta1         107 LDLIGRVFL--NPGDPIVVEAPTYLAAIQAFKYYD-------------PEFISIPLDDKG---MRVDLLEEKLEELRKQG  168 (403)
T ss_dssp             HHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTC-------------CEEEEEEEETTE---ECHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHh--hcCCccccCCCcchhhhHHHhhcc-------------ccceeEeecccC---Cccccccccchhhhhcc
Confidence            999998643  256889999999987766554332             222221111111   12222223333343333


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc---cCCCCCEEEeecccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA---HGVVPDIVTMAKGIG  327 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~---~gv~pDivt~sK~lg  327 (447)
                       ......+++-+.++++|.+. +.+.+++|.++|++|+++||.||+|..|.+.|...-....   ++...-+-++||.++
T Consensus       169 -~~~~~~~~~~~p~NPtG~~~-s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  246 (403)
T d1wsta1         169 -KRVKIVYTVSTFQNPAGVTM-SVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA  246 (403)
T ss_dssp             -CCCCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC
T ss_pred             -ccccccccccccCCCCCccC-CHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec
Confidence             22444454444566677665 7888999999999999999999999988766632222222   222223346899998


Q ss_pred             CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCeeeE
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-Y--GIIGDV  404 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~--~~i~~v  404 (447)
                      .|+++|++++++++++.+.......+.+.++..+.+..+.++....+...++.++.-...++.+.+...+ .  .+....
T Consensus       247 ~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  326 (403)
T d1wsta1         247 PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTK  326 (403)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred             CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeC
Confidence            8999999999999988776543344555666665555554443223333333333332333333222222 2  222233


Q ss_pred             eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +..|+++++++.+.-        ....+.+.|+++||++.+
T Consensus       327 p~gg~~~~~~~~~~~--------~~~~~~~~l~~~gV~v~p  359 (403)
T d1wsta1         327 PEGGMFVRVTLPEGI--------DTKLMMERAVAKGVAYVP  359 (403)
T ss_dssp             CSBSSEEEEECCTTC--------CTTTTHHHHHHTTEECEE
T ss_pred             CCceeEEEEECCCCC--------CHHHHHHHHHHCCEEEEe
Confidence            455888888884321        124578889999999864

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=9.5e-20  Score=175.06  Aligned_cols=303  Identities=11%  Similarity=-0.028  Sum_probs=171.1

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar  179 (447)
                      .+|||.|.    +.++.||+|++|+.++..  .|....+.++...+++++|++++.. ...++|++||||||+.|++.++
T Consensus         3 ~~~~f~s~----n~~g~~P~v~~A~~~a~~--~~~~~~~~~~~~~~l~~~la~~~g~-~~~v~f~~sGt~An~~a~~~~~   75 (345)
T d1v72a1           3 PALGFSSD----NIAGASPEVAQALVKHSS--GQAGPYGTDELTAQVKRKFCEIFER-DVEVFLVPTGTAANALCLSAMT   75 (345)
T ss_dssp             CCCBCSCG----GGCCCCHHHHHHHHHTTS--SCCCSTTCSHHHHHHHHHHHHHHTS-CCEEEEESCHHHHHHHHHHTSC
T ss_pred             CCcCcCCC----CCCCCCHHHHHHHHHHhc--cCccccCCCHHHHHHHHHHHHHHCC-CcEEEECCchHHHHHHHHHHHH
Confidence            36888753    234589999999987643  2334445788889999999999964 3468899999999999999776


Q ss_pred             hhcCCCeEEEEcC--CcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCCe
Q 013235          180 LYTGCNDIISLRN--AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHV  255 (447)
Q Consensus       180 ~~t~~~~ii~~~~--~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~  255 (447)
                      ..  ...++....  .+|.........++            ....+.+....+.  .+    .+.+++.+....  ...+
T Consensus        76 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~--~~----~~~l~~~~~~~~~~~~~~  135 (345)
T d1v72a1          76 PP--WGNIYCHPASHINNDECGAPEFFSN------------GAKLMTVDGPAAK--LD----IVRLRERTREKVGDVHTT  135 (345)
T ss_dssp             CT--TEEEEECTTSHHHHSSTTHHHHHTT------------SCEEEECCCGGGC--CC----HHHHHHHTTSSTTCTTSC
T ss_pred             hc--CCccccccccceeeechhhHHHhcC------------ccccccccccccc--cc----HHHhhhhhcccccccccc
Confidence            53  223222211  12222111111111            1111111111111  12    556666664321  2245


Q ss_pred             EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC--CCCEEEeeccccCCcccc
Q 013235          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLG  333 (447)
Q Consensus       256 aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv--~pDivt~sK~lg~G~pig  333 (447)
                      ..+++++++++.+....+.+.++++.++|++||+++++||+|+++++++ ..+.......  .++.++++|..+++...+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (345)
T d1v72a1         136 QPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVS-LGCSPAEMTWKAGVDALSFGATKNGVLAAE  214 (345)
T ss_dssp             EEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH-HTCCTTTTTGGGTCCEEEECCGGGTCSSCE
T ss_pred             cceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccc-cccCHHHhhccccccccccCcccccccccc
Confidence            6677777666655566677889999999999999999999999877665 3444444333  456677777777654444


Q ss_pred             ccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-eecceeE
Q 013235          334 AVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLL  411 (447)
Q Consensus       334 av~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~  411 (447)
                      ..... ..............+. ..+....++.+.+..+.+... .+......++...+.+...+.+.+... .+.+.++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~aa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv  292 (345)
T d1v72a1         215 AIVLFNTSLATEMSYRRKRAGH-LSSKMRFLSAQIDAYLTDDLW-LRNARKANAAAQRLAQGLEGLGGVEVLGGTEANIL  292 (345)
T ss_dssp             EEEESSGGGHHHHHHHHHHTTC-CCSSTHHHHHHHHHHTSTTHH-HHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEE
T ss_pred             ccccchhhhhhhcccccccccc-ccchhhHHhhhhHHHHHHhhh-hhhccchhhHHHHHHHHHHhcCCcEeccCCCccEE
Confidence            44433 3322222211111222 222333333444444443332 222333333444444444455544333 3345666


Q ss_pred             EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+.+.             ..+.+.|+++|+.+..
T Consensus       293 ~~~~~-------------~~~~~~L~~~gi~v~~  313 (345)
T d1v72a1         293 FCRLD-------------SAMIDALLKAGFGFYH  313 (345)
T ss_dssp             EEEEC-------------HHHHHHHHHTTCBCBC
T ss_pred             EEEcC-------------HHHHHHHHHcCCCccc
Confidence            66652             2467889999998753

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.6e-19  Score=173.72  Aligned_cols=306  Identities=12%  Similarity=0.013  Sum_probs=183.3

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHh
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL  180 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~  180 (447)
                      +|||.+-..+.    .+|+|++|+.++..  +. ...+..+...+|+++|+++++  .+.++|++||++||++||+.++.
T Consensus         1 ~~~~~~~~~t~----p~p~v~~A~~~a~~--g~-~~yg~~p~~~~le~~lA~~~G--~~~~~~~~sGt~A~~~al~a~~~   71 (343)
T d1m6sa_           1 MIDLRSDTVTK----PTEEMRKAMAQAEV--GD-DVYGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMAHTQ   71 (343)
T ss_dssp             CEECSCGGGCC----CCHHHHHHHHTCCC--CC-GGGTCCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHCC
T ss_pred             CcccccccCCC----CCHHHHHHHHhhhc--CC-cccCCCHHHHHHHHHHHHHHC--CCeEEEeCCHHHHHHHHHHHHhc
Confidence            37887766666    47999999876432  11 123457888999999999984  56789999999999999987665


Q ss_pred             hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCCeEEE
Q 013235          181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGF  258 (447)
Q Consensus       181 ~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~aav  258 (447)
                        ..+.++.....++.............        ..+..++.+.     ...|    .+.+++.+....  ..++..+
T Consensus        72 --~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-----~~~~----~~~~~~~i~~~~~~~~~~~~~  132 (343)
T d1m6sa_          72 --RGDEVILEADSHIFWYEVGAMAVLSG--------VMPHPVPGKN-----GAMD----PDDVRKAIRPRNIHFPRTSLI  132 (343)
T ss_dssp             --TTCEEEEETTCHHHHSSTTHHHHHTC--------CEEEEECEET-----TEEC----HHHHHHHSCCSCTTSCCEEEE
T ss_pred             --cCCceeccccccceeeeccccccccc--------ceeecccccc-----CccC----HHHHHHhhhhhhccccccccc
Confidence              45666666655543332222111100        0111111110     0012    445555554321  1356777


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccC-Ccccccccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGAVVT  337 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pigav~~  337 (447)
                      ++++.+++.|...++.+.+++|+++|++||+++|+||+++++...+ ..+.........+.++++|..+. |.+.++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  211 (343)
T d1m6sa_         133 AIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIA-SGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVG  211 (343)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHH-HCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEE
T ss_pred             ccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccc-cccchhhhccccccccccccccccccccccccc
Confidence            7777666666666688999999999999999999999998875544 33333333345667777777764 567888888


Q ss_pred             CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEee
Q 013235          338 TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT  417 (447)
Q Consensus       338 ~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~  417 (447)
                      .++.+...........++..+.+.+++.......+.....+...+...++.+.+.++.... ...  .....++.+++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~v~~~~~~  288 (343)
T d1m6sa_         212 DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSV-NPE--DVKTNMVILRTDN  288 (343)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBC-CGG--GCCSSEEEEECTT
T ss_pred             cHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCc-cCC--CCCceEEEEEeCC
Confidence            8887765543222222222233333333322222333444555566666666666653211 111  1234566666532


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          418 DRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       418 ~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..       ..+.++.+.|+++||++++
T Consensus       289 ~~-------~~a~~l~~~L~~~Gi~v~~  309 (343)
T d1m6sa_         289 LK-------VNAHGFIEALRNSGVLANA  309 (343)
T ss_dssp             SS-------SCHHHHHHHHHHHTEECEE
T ss_pred             Cc-------ccHHHHHHHHHHCCCEEec
Confidence            21       1246799999999999863

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1e-20  Score=193.02  Aligned_cols=276  Identities=13%  Similarity=0.109  Sum_probs=180.7

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      ++.+||+.+..++..+.|   .    +...+...   ...| -++...+|++++++++  +.+.++|++||++||+.|++
T Consensus        40 ~~~~idl~sd~~t~~~~~---~----~~a~~~~g---d~~Y~~~~~~~~le~~~a~l~--G~~~~~~~~sGt~A~~~a~~  107 (467)
T d2v1pa1          40 EDVFIDLLTDSGTGAVTQ---S----MQAAMMRG---DEAFSGSRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYIP  107 (467)
T ss_dssp             GGCSEECSCCTTCSCCCH---H----HHHHTTSC---CCCSSSCHHHHHHHHHHHHHT--CCSEEEEECSSTTTHHHHHH
T ss_pred             cceeeeccccccchhhHH---H----HHhhcccc---chhhcCCchHHHHHHHHHHHH--CCCEEEECCCCHHHHHHHHH
Confidence            446899998777553332   1    22222211   1122 3678889999999999  46789999999999999999


Q ss_pred             HHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          177 MARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       177 ~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +++..      .++..+++..+.||+.+.+....++.........  ...........  ....|    .+++++.+...
T Consensus       108 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~--~~~~d----~~~l~~~i~~~  179 (467)
T d2v1pa1         108 VLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIK--EAFDTGVRYDF--KGNFD----LEGLERGIEEV  179 (467)
T ss_dssp             HHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCT--TTTCTTSCCTT--TTCBC----HHHHHHHHHHH
T ss_pred             HHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccc--ccccccccccc--ccCCC----HHHHHHHHhhc
Confidence            88764      3456678889999999988887776321100000  00000000000  11134    67888888776


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC---ccccCCCcccccccC---------CCCC
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG---FARTGSHFWGFEAHG---------VVPD  318 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG---fgr~G~~~~~~~~~g---------v~pD  318 (447)
                      .++.++++++|++++.+|..+++.+++++|+++|++||++||+||++..   ++..+ ..+++...+         -..|
T Consensus       180 ~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~d  258 (467)
T d2v1pa1         180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ-REAEYKDWTIEQITRETYKYAD  258 (467)
T ss_dssp             CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHH-HCGGGTTSCHHHHHHHHGGGCS
T ss_pred             CccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhcccccccc-ccccccCCcccccchhhcccCC
Confidence            6678999999999999988888999999999999999999999999852   11122 222222222         2479


Q ss_pred             EEEeeccccCCcccccccc-CHH-HHHhhc-------CCcccccCCCChHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHH
Q 013235          319 IVTMAKGIGNGIPLGAVVT-TPE-IAEVLT-------RRNYFNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGSYLK  388 (447)
Q Consensus       319 ivt~sK~lg~G~pigav~~-~~~-i~~~l~-------~~~~~~T~~~np~a~aaala-~L~~i~~~~l~~~~~~~g~~l~  388 (447)
                      ++++++..+.+.|.|++++ +++ +.....       ...++.++++.+.+.+++.+ .+.....+++.++..+++++|.
T Consensus       259 ~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~  338 (467)
T d2v1pa1         259 MLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLV  338 (467)
T ss_dssp             EEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHH
Confidence            9999877765556666554 333 322221       12344566666555544444 4555556788888899999999


Q ss_pred             HHHHHH
Q 013235          389 ERLTAL  394 (447)
Q Consensus       389 ~~L~~l  394 (447)
                      ++|.+.
T Consensus       339 ~~L~~~  344 (467)
T d2v1pa1         339 DGLEEI  344 (467)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999875

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.80  E-value=2e-18  Score=173.25  Aligned_cols=320  Identities=11%  Similarity=0.069  Sum_probs=191.7

Q ss_pred             EEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-----chHHHHHHHHHHHhCC--CC-CceEEEcCCHHHHHH
Q 013235          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKMP--GN-LKVVFFTNSGTEANE  172 (447)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-----~~~~~elae~L~~~~~--~~-~~~v~~~~sGseA~e  172 (447)
                      .||+..|...  + ..++.+.+|+.+.++........|.     .+.+..+++.+.+..+  .. .++|++++++++|+.
T Consensus        28 ~I~L~~G~Pd--~-~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~  104 (418)
T d2r5ea1          28 PLNLGQGFPD--Y-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY  104 (418)
T ss_dssp             CEECSSSCCS--S-CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CEEccCCCCC--C-CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence            3777766542  2 2467899999998865432222333     2334455555655433  22 467999999999999


Q ss_pred             HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCC-CC-----cCCCCCCChHHHHHHHHHH
Q 013235          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP-DP-----YRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p-~~-----~~~~~~~d~~~~~~~le~~  246 (447)
                      .+++....  +++.|++.+++|.............           +..++.. +.     ....|..+    .+++++.
T Consensus       105 ~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~  167 (418)
T d2r5ea1         105 ATIQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGI-----------PRFIPLKPNKTGGTISSADWVLD----NNELEAL  167 (418)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEECEESCCSSCEEGGGEECC----HHHHHHH
T ss_pred             hhhhhccc--cccceeccccccchhhHHHHHcCCe-----------EEEEEecccccccchhhhhhhhh----HHHHhhh
Confidence            99986543  6789999999998776655544321           1111110 00     00011112    2333333


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEE---Ee
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIV---TM  322 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDiv---t~  322 (447)
                      .    ...+.++++.+.++++|.+. +++.+++|.++|++||+++|.||+|..|...+...-.. ...+..+.++   ++
T Consensus       168 ~----~~~~~~~~i~~p~NPtG~~~-s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~  242 (418)
T d2r5ea1         168 F----NEKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSA  242 (418)
T ss_dssp             C----CTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEH
T ss_pred             h----hccccceecCCcCccccccc-cHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecC
Confidence            2    23566666655667777665 78899999999999999999999998876554222122 2223333333   68


Q ss_pred             ecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHH
Q 013235          323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-----KDKLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       323 sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-----~~~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      ||.++ .|+++|++++++++++.+.......+++.+...+.++.+.+..-.     .+++.++.++.-+..++.|.+..+
T Consensus       243 SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  322 (418)
T d2r5ea1         243 GKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLA  322 (418)
T ss_dssp             HHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHh
Confidence            99998 899999999999999887654444566666666666655553211     123333333333333333444444


Q ss_pred             hcCCeeeEeecceeEEEEEeeCCCC----CCCCHHHHHHHHHHHHh-CCceeec
Q 013235          397 KYGIIGDVRGRGFLLGVEFVTDRQL----KTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       397 ~~~~i~~vrg~Gl~~giel~~~~~~----~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      +.++....+.-|+++++++..-...    .........++++.|++ .||++.+
T Consensus       323 ~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~P  376 (418)
T d2r5ea1         323 EVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIP  376 (418)
T ss_dssp             HTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBC
T ss_pred             hcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeC
Confidence            4455445566788999998532211    11112234568888775 4998864

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=2.3e-18  Score=169.99  Aligned_cols=304  Identities=16%  Similarity=0.149  Sum_probs=181.8

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC------CCCCceEEEcCCHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLKVVFFTNSGTE  169 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~------~~~~~~v~~~~sGse  169 (447)
                      .|+.+||+..|...  +. .++.+.+++.+.++...+   .|.. ....+|.+.+++++      +.+.+++++++++++
T Consensus        26 ~G~~vI~l~~G~p~--~~-~p~~i~~~~~~~~~~~~~---~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~   99 (375)
T d1o4sa_          26 KGEDVINLTAGEPD--FP-TPEPVVEEAVRFLQKGEV---KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ   99 (375)
T ss_dssp             TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHTTCCC---CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred             CCCCeEECCCcCCC--CC-CCHHHHHHHHHHHhcCCc---CCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHH
Confidence            46778998877653  34 578999999988765321   2332 23445555555442      345678999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..+++....  .++.|++.+++|...........             ......+......|..|    .+.++..   
T Consensus       100 al~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----~~~~~~~---  157 (375)
T d1o4sa_         100 ALFNAFMALLD--PGDEVIVFSPVWVSYIPQIILAG-------------GTVNVVETFMSKNFQPS----LEEVEGL---  157 (375)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECCGGGTTCCC----HHHHHHT---
T ss_pred             HHHHHHHHHhC--CCCEEEEccCccccchhhhhccc-------------cccccccccccccccch----hHHHHHh---
Confidence            99999875432  56789999999976544333221             11111111112222223    2333322   


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC---EEEeeccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD---IVTMAKGI  326 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD---ivt~sK~l  326 (447)
                      ..++....++..| ++++|.+. +.+.+++|.++|++|+++||.||++..+...+...-.....+....   +-++||.+
T Consensus       158 ~~~~~~~~~l~nP-~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  235 (375)
T d1o4sa_         158 LVGKTKAVLINSP-NNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH  235 (375)
T ss_dssp             CCTTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT
T ss_pred             hccCccEEEEeCC-CCCccCCC-CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhc
Confidence            2233445666666 67777765 7899999999999999999999999877554421111122222223   33689999


Q ss_pred             c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (447)
Q Consensus       327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  405 (447)
                      + .|+++|++++++++++.+.......+..........+...++.. .....+..++..+.+.+.|++.    ++-...+
T Consensus       236 ~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~~----g~~~~~p  310 (375)
T d1o4sa_         236 SMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM----GVKFVEP  310 (375)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT----TCCCCCC
T ss_pred             cCCccccccccccccchhhhhhhhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHhc----CceEecC
Confidence            9 79999999999999887764333333334444443333332211 1234455556666666666554    3222223


Q ss_pred             ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      ..|+++++++..+          ..+++.+|+ ++||++.+
T Consensus       311 ~gg~f~~~~~~~~----------~~~~~~~ll~~~gV~v~p  341 (375)
T d1o4sa_         311 EGAFYLFFKVRGD----------DVKFCERLLEEKKVALVP  341 (375)
T ss_dssp             SBSSEEEEECSSC----------HHHHHHHHHHHHCEECEE
T ss_pred             CccEEEEEECCCC----------HHHHHHHHHHhCCEEEEE
Confidence            3478888887321          234556655 67999875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.78  E-value=1.8e-18  Score=172.32  Aligned_cols=312  Identities=13%  Similarity=-0.013  Sum_probs=181.3

Q ss_pred             cCCCeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhccc--ccccccchHHHHHHHHHHHhC--CCCCceEEEcCCHHHH
Q 013235           96 ENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKM--PGNLKVVFFTNSGTEA  170 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~--~~~~~~~~~~~elae~L~~~~--~~~~~~v~~~~sGseA  170 (447)
                      .+|+.+||+..|.... .+. .++.+.+|+.+.++...+  +...+..+....+++.+.+..  +...++++++++++++
T Consensus        27 ~~G~~vi~l~~G~P~~~df~-~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~  105 (395)
T d1xi9a_          27 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA  105 (395)
T ss_dssp             HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred             HCCCCeEECCCCCCCCCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence            4688899998876422 233 567899999998876421  111112223334444444443  3456789999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +.++++....  .++.|++.+++|+.....+....             ...+..|......|..|    .+++++.+.  
T Consensus       106 ~~~~~~~~~~--~Gd~vlv~~P~y~~~~~~~~~~g-------------~~~v~v~~~~~~~~~~d----~~~~~~~~~--  164 (395)
T d1xi9a_         106 LQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYG-------------GKPVEYRTIEEEDWQPD----IDDIRKKIT--  164 (395)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTT-------------CEEEEEEEEGGGTSEEC----HHHHHHHCC--
T ss_pred             hhhhhhhhcC--CCCEEEEcCCccccchhhhhhcC-------------CEEEEEeccccccccch----HHHHHHhhc--
Confidence            9998875433  56789999999987665544332             22222222222223334    445554443  


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG  327 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg  327 (447)
                       ++....+++.| ++++|.+. +.+.+++|.++|++||+++|.||++..+...+ .........-...++   +|||.++
T Consensus       165 -~~~~~v~l~~P-~NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~  240 (395)
T d1xi9a_         165 -DRTKAIAVINP-NNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLSKVYF  240 (395)
T ss_dssp             -TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred             -ccccEEEecCC-CCCccchh-hHHHHHHHHhhhhhcCeeEEeccccccccccc-cccchhhcCCCCCEEEEeCcchhcc
Confidence             33455666777 56677655 78899999999999999999999998875544 222221111222334   6999998


Q ss_pred             -CCcccccccc--CHHHHHhhcC---CcccccCCCChHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHh
Q 013235          328 -NGIPLGAVVT--TPEIAEVLTR---RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ----NNAHVVGSYLKERLTALKDK  397 (447)
Q Consensus       328 -~G~pigav~~--~~~i~~~l~~---~~~~~T~~~np~a~aaala~L~~i~~~~l~----~~~~~~g~~l~~~L~~l~~~  397 (447)
                       .|+++|+++.  ..+.+..+..   .....+++.+.+++.++...|+.  .+++.    +.+++..+.+.+.|+    +
T Consensus       241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~----~  314 (395)
T d1xi9a_         241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG--PMDYLKEYMKKLKERRDYIYKRLN----E  314 (395)
T ss_dssp             CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHH----T
T ss_pred             cchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence             6999998764  2222221111   11123455566777777666642  22233    333344444444443    3


Q ss_pred             cCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          398 YGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       398 ~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      .+.+... +..|+++++++.....   .+   ..+++++|+ +.||++.+
T Consensus       315 ~~~~~~~~p~gg~~~~~~l~~~~~---~~---~~~~~~~ll~~~gV~v~P  358 (395)
T d1xi9a_         315 IPGISTTKPQGAFYIFPKIEVGPW---KN---DKEFVLDVLHNAHVLFVH  358 (395)
T ss_dssp             STTEECCCCCBSSEECCEECSCSC---SS---HHHHHHHHHHHHCEECEE
T ss_pred             CCCceecCCCeeEEEeEECCCCCC---CC---HHHHHHHHHHhCCEEEEc
Confidence            4443333 3347888888843211   11   234555554 66998864

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-17  Score=168.00  Aligned_cols=330  Identities=12%  Similarity=0.051  Sum_probs=188.4

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-----chHHHHHHHHHHHhCCCC---CceEEEcCCHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKMPGN---LKVVFFTNSGTE  169 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-----~~~~~elae~L~~~~~~~---~~~v~~~~sGse  169 (447)
                      +..+||+..|...  +. .++.|.+|+.+.+.... ....|+     .+....+++.+.+.++..   .++|++++++++
T Consensus        24 ~~dvI~l~~G~p~--~~-~p~~v~~a~~~al~~~~-~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~   99 (418)
T d1w7la_          24 EHDVVNLGQGFPD--FP-PPDFAVEAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYG   99 (418)
T ss_dssp             TSCCEECCCCSCS--SC-CCHHHHHHHHHHTSSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHH
T ss_pred             CCCCEECCCCCCC--CC-CCHHHHHHHHHHHhCCC-cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHH
Confidence            3457898877753  33 46788899988876431 112233     233344555554443333   247999999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      |+..+++....  +++.|++.+++|+.............. .............  ......|..|    .+++   ...
T Consensus       100 al~~~~~~l~~--~g~~vlv~~p~~~~y~~~~~~~g~~~v-~~~~~~~~~~~~~--~~~~~~~~~d----~~~~---~~~  167 (418)
T d1w7la_         100 ALFTAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPV-FVSLKPGPIQNGE--LGSSSNWQLD----PMEL---AGK  167 (418)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEE-EEECEECC---CC--SEEGGGEECC----HHHH---HHH
T ss_pred             HHHHHHHhhcc--CCceeeccccccchhHHHHHHcCCEee-ccccccccccccc--cccccCcccc----hhhh---hcc
Confidence            99999876543  568899999999877655544332110 0000000000000  0000011111    1222   222


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCCCCEE---Eeecc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIV---TMAKG  325 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~pDiv---t~sK~  325 (447)
                      ..+ .+.++++-..++++|.+. +++.+++|.++|++|++++|.||+|..|.+.+........+ +..+.++   ++||.
T Consensus       168 ~~~-~~~~i~~~~p~NPtG~~~-s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  245 (418)
T d1w7la_         168 FTS-RTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKT  245 (418)
T ss_dssp             CCT-TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHH
T ss_pred             ccc-cccceeccCcCCcccccc-cHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCcc
Confidence            223 444444444455666654 78889999999999999999999999987766433333222 2223333   68999


Q ss_pred             cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      ++ .|+|+|++++++++++.+.......+++.+.+++.++.+.|..-..     .++..+.++.-+..++.|.+..++.+
T Consensus       246 ~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g  325 (418)
T d1w7la_         246 FSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG  325 (418)
T ss_dssp             TTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcC
Confidence            88 6999999999999988876544446677778887777777653221     12333333322223333333334445


Q ss_pred             CeeeEeecceeEEEEEeeCCC-----CCCCCHHHHHHHHHHHH-hCCceeec
Q 013235          400 IIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMK-GICALFFS  445 (447)
Q Consensus       400 ~i~~vrg~Gl~~giel~~~~~-----~~~p~~~~~~~~~~~l~-~~Gvlv~~  445 (447)
                      +....+..|.++++++.+...     ....+.....+++++|+ +.||++.+
T Consensus       326 ~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~P  377 (418)
T d1w7la_         326 LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP  377 (418)
T ss_dssp             CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEE
T ss_pred             CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEc
Confidence            433445568889998843100     00001112345777665 56998864

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.5e-18  Score=174.17  Aligned_cols=320  Identities=11%  Similarity=0.074  Sum_probs=187.0

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHH----hCC---CCCceEEEcCCHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALAS----KMP---GNLKVVFFTNSGT  168 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~----~~~---~~~~~v~~~~sGs  168 (447)
                      .+..+|||..|.....+= ..+.+.+++.+.++........|. .....+|.+.|++    ..+   .+.++|+++++++
T Consensus        36 ~~~~~I~l~~G~Pd~~~~-P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~  114 (420)
T d1vp4a_          36 ADKDAISFGGGVPDPETF-PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ  114 (420)
T ss_dssp             TSTTCEECCCCSCCGGGS-CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred             CCCCcEecCCcCCCCccC-CHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence            556789998776432221 235566666666654322112232 2223444444444    332   3567899999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +|+..++....  .+++.|++.+++|..........             |...+..|...   .+.|.+.....+++...
T Consensus       115 ~al~~~~~~~~--~~Gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~~~~~~---~~~~~~~l~~~~~~~~~  176 (420)
T d1vp4a_         115 QALDLIGKLFL--DDESYCVLDDPAYLGAINAFRQY-------------LANFVVVPLED---DGMDLNVLERKLSEFDK  176 (420)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTT-------------TCEEEEEEEET---TEECHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhh--ccccccccccccccchhHHHHHH-------------hhhcccccccc---cccccchhhhhhhhhHH
Confidence            99999887533  25688999999998665443322             22222222111   11232221122222211


Q ss_pred             ccC-CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC----EEEee
Q 013235          249 FGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMA  323 (447)
Q Consensus       249 ~~~-~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD----ivt~s  323 (447)
                      ... .+..+.+++.+.++++|.+. +.+.+++|.++|++|++++|.||+|..|...+.........+ .++    +.+++
T Consensus       177 ~~~~~~~~~~~~~~~p~NPtG~~~-s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~s~s  254 (420)
T d1vp4a_         177 NGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFS  254 (420)
T ss_dssp             TTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEEST
T ss_pred             HhhccccceeeEecCCCCccchhh-hhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-cccceeEEeccc
Confidence            111 22334444545566777665 788999999999999999999999998876663222111111 222    22467


Q ss_pred             ccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235          324 KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSYLKERLTALKDKYG  399 (447)
Q Consensus       324 K~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~----~~l~~~~~~~g~~l~~~L~~l~~~~~  399 (447)
                      |.+..|+++|++++++++++.+.......+.+.+.+..+++...++.-.-    .+..+..++..+.+.+.|++...+.+
T Consensus       255 k~~~~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  334 (420)
T d1vp4a_         255 KVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP  334 (420)
T ss_dssp             TTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred             cccccccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCC
Confidence            77778999999999999999887654445566667776666666643211    12334445555556666665544433


Q ss_pred             CeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          400 IIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       400 ~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+.-.+. -|+++++++.+...        ..++.+.|+++||++.+
T Consensus       335 g~~~~~p~gg~f~~~~~~~~~d--------~~~~~~~l~~~gV~v~P  373 (420)
T d1vp4a_         335 GVKWVKSEGGLFIWLTLPEGFD--------TWEMFEYAKRKKVFYVP  373 (420)
T ss_dssp             TCEECCCSBSSEEEEECCTTCC--------TTTTHHHHHHHTEECEE
T ss_pred             CcEEecCCceEEEEEECCCCCC--------HHHHHHHHHHCCeEEEe
Confidence            3433333 36788888742211        23467788999999864

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.77  E-value=1.7e-17  Score=165.08  Aligned_cols=310  Identities=11%  Similarity=0.035  Sum_probs=175.8

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC------CCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~------~~~~~~v~~~~sGseA  170 (447)
                      .|+.+|||..|..  .+. .+|.|++|+.+.++...+   .|+. ...+|++.+++++      +...++|++++++++|
T Consensus        29 ~g~~vi~l~~g~p--df~-~p~~v~~al~~~~~~~~~---~Y~~-g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~a  101 (394)
T d1c7na_          29 VGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVL---GYTG-PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPA  101 (394)
T ss_dssp             CCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCC---SSBC-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred             cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCCCc---CCCC-CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhh
Confidence            4677888876665  344 689999999999876422   2332 1235555555543      3456789999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cCCCCCCChHHHHHHHHHHHHc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      +..+++...  .+++.|++..+.|.+.........             ...+..+.. ....|..|    .+.++..+. 
T Consensus       102 l~~~~~~~~--~pgd~vi~~~p~~~~~~~~~~~~g-------------~~~v~~~~~~~~~~~~~d----~~~~~~~~~-  161 (394)
T d1c7na_         102 VFNAVREFT--KPGDGVIIITPVYYPFFMAIKNQE-------------RKIIECELLEKDGYYTID----FQKLEKLSK-  161 (394)
T ss_dssp             HHHHHHHHC--CTTCEEEECSSCCTHHHHHHHTTT-------------CEEEECCCEEETTEEECC----HHHHHHHHT-
T ss_pred             hhhhhcccc--ccccccccccCcccchhhHHhhhh-------------hcccccccccccccccch----hhhhhhhhc-
Confidence            999998543  266889999999976655444332             222222211 11122223    344554443 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc--cCCCCCEE---Eeec
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA--HGVVPDIV---TMAK  324 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~--~gv~pDiv---t~sK  324 (447)
                        ..++.++++...++++|.+. +.+.+++|.++|++|++++|.||+|..|-..+........  .+.....+   ++||
T Consensus       162 --~~~~~~i~l~~P~NPTG~v~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK  238 (394)
T d1c7na_         162 --DKNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSK  238 (394)
T ss_dssp             --CTTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHH
T ss_pred             --cccceEEEecccccccceec-cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccc
Confidence              22444444444455667665 7888999999999999999999999988655421111111  11111222   4789


Q ss_pred             ccc-CCccccccccCH-HHHHhhcCCcccccCCCC-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 013235          325 GIG-NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GI  400 (447)
Q Consensus       325 ~lg-~G~pigav~~~~-~i~~~l~~~~~~~T~~~n-p~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~  400 (447)
                      .++ .|+++|++++++ ++.+.+.......+.... ....+++....+.  .++..+...+.-+.-++.+.++.+.+ ..
T Consensus       239 ~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  316 (394)
T d1c7na_         239 TFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRIVKDFFEVNHPE  316 (394)
T ss_dssp             HHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcc--hhhhhcccccccchhhhhhhhhhhccccc
Confidence            998 799999888764 565655432222222222 2222333222221  12233333333333344444443332 22


Q ss_pred             eeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          401 IGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       401 i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      +.... ..|.++++++.....       ...++++.|+++ ||++.+
T Consensus       317 ~~~~~p~g~~~~~~~~~~~~~-------~~~~~~~~Ll~~~gV~v~p  356 (394)
T d1c7na_         317 IKAPLIEGTYLQWIDFRALKM-------DHKAMEEFMIHKAQIFFDE  356 (394)
T ss_dssp             SBCCCCSBSSEEEEECGGGCC-------CHHHHHHHHHHTTCCCCEE
T ss_pred             eeecCCCceeEEEEECCCCCC-------CHHHHHHHHHHhCCEEEEc
Confidence            33333 346677787742110       135688888766 998864

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=6.8e-17  Score=160.10  Aligned_cols=303  Identities=15%  Similarity=0.108  Sum_probs=173.6

Q ss_pred             cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHH
Q 013235           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE  172 (447)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e  172 (447)
                      ..|+.+||+..|...  +. .++.+.+|+.+...... +....+..+.+..+++.+.+..+  ...++|++++++++++.
T Consensus        25 ~~g~~vi~l~~G~p~--~~-~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~  101 (389)
T d2gb3a1          25 KRGVRIHHLNIGQPD--LK-TPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  101 (389)
T ss_dssp             HTTCEEEECSSCCCC--SC-CCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             HcCCCEEECCCCCCC--CC-CCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence            358888999877653  33 36778888876543321 11111222333445555554433  34678999999999999


Q ss_pred             HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (447)
Q Consensus       173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (447)
                      .+++....  .++.|++.+++|..........             |+..+..+......+..+     +.+.   ... .
T Consensus       102 ~~~~~l~~--~gd~V~i~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~-----~~~~---~~~-~  157 (389)
T d2gb3a1         102 FSFAVIAN--PGDEILVLEPFYANYNAFAKIA-------------GVKLIPVTRRMEEGFAIP-----QNLE---SFI-N  157 (389)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTHHHHHHHHH-------------TCEEEEEECCGGGTSCCC-----TTGG---GGC-C
T ss_pred             cccccccc--CCCeEEEeCCCCcccccccccc-------------Cccccccccccccccchh-----hhhh---hhc-c
Confidence            98875543  5678999999997655444333             222222222111111111     1111   112 2


Q ss_pred             CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eeecccc-CC
Q 013235          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG-NG  329 (447)
Q Consensus       253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg-~G  329 (447)
                      +++.++++...++++|.+. +.+.+++|.++|++|++++|.||++..+...+ .........-...++  .++|.++ .|
T Consensus       158 ~~~~~~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~~~~v~~s~sK~~~~~G  235 (389)
T d2gb3a1         158 ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSACG  235 (389)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTCGG
T ss_pred             cCccEEEeCCCCccccccc-hHHHHHHHHhhcccCCEEEEEecccccccccc-ccccccccccccccccccccccccCcc
Confidence            3455554444466677665 78999999999999999999999999887766 222222111122233  4679988 59


Q ss_pred             ccccccccCHH-HHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeec
Q 013235          330 IPLGAVVTTPE-IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGR  407 (447)
Q Consensus       330 ~pigav~~~~~-i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~  407 (447)
                      +++|+++++.+ +...+.. ...+.++.+++...++.+.++.  .+...+.+++.-+..++.+.+..++++... .....
T Consensus       236 lRiG~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~  312 (389)
T d2gb3a1         236 ARVGCLITRNEELISHAMK-LAQGRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSG  312 (389)
T ss_dssp             GCCEEEECSCHHHHHHHHH-HHHHSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSB
T ss_pred             cceeeeeccchhHHHHHhh-hhhccccccccccccccccccc--cchhcccccccccccchhhhhhhhhhccccccCCCc
Confidence            99999998665 4443322 2334555667777766666532  223333333333333444444444455433 33566


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI  439 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~  439 (447)
                      |+++++++...      +   ..++++.|+++
T Consensus       313 g~~~~~~lp~~------~---~~~~~~~ll~e  335 (389)
T d2gb3a1         313 AFYITAELPVE------D---AEEFARWMLTD  335 (389)
T ss_dssp             SSEEEEECSSS------C---HHHHHHHHHHS
T ss_pred             eEEEEEeCCCC------C---HHHHHHHHHHh
Confidence            88999987321      1   34566666543

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.74  E-value=2e-16  Score=159.10  Aligned_cols=280  Identities=16%  Similarity=0.121  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHhC----CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          142 AIADFAEALASKM----PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       142 ~~~elae~L~~~~----~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      ...++++.+.+..    +.+.++|++++++++|++.+++...  .+++.|++.+++|++........            .
T Consensus        89 LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~--~pGd~Vlv~~P~y~~~~~~~~~~------------~  154 (431)
T d1m7ya_          89 FKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--DPGEAVLIPTPYYPGFDRDLKWR------------T  154 (431)
T ss_dssp             HHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--CTTCEEEEEESCCTTHHHHTTTT------------T
T ss_pred             HHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHh------------c
Confidence            3444555555443    2345789999999999999998543  25688999999997654433211            1


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE-EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG-FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa-vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      |+..++.+......|..|.+.+.+.+++... ..+ ++.+ ++..| ++++|.+. +++.+++|.++|++||+++|+||+
T Consensus       155 g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~-~~~-~~~~i~~~nP-~NPtG~~~-s~~~l~~i~~~a~~~~~~vI~De~  230 (431)
T d1m7ya_         155 GVEIVPIHCTSSNGFQITETALEEAYQEAEK-RNL-RVKGVLVTNP-SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEI  230 (431)
T ss_dssp             CCEEEEEECCGGGTSCCCHHHHHHHHHHHHH-TTC-CEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             CceeccccccchhcccccHHHhhhhhhhhhh-ccC-cceEEEecCc-cccccccc-cccccccccccccccCcceeeccc
Confidence            3444444333333454564443333333322 223 4444 44555 55666554 789999999999999999999999


Q ss_pred             ccCccccCCCcccc-cc---cCC------CCCEE---Eeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHH
Q 013235          297 QAGFARTGSHFWGF-EA---HGV------VPDIV---TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA  362 (447)
Q Consensus       297 ~tGfgr~G~~~~~~-~~---~gv------~pDiv---t~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~a  362 (447)
                      |..+-..+..+... +.   ...      ...++   +|||.++ .|+++|+++++++++...... .......++....
T Consensus       231 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~-~~~~~~~~~~~~~  309 (431)
T d1m7ya_         231 YSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MSSFGLVSSQTQH  309 (431)
T ss_dssp             TGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-HGGGSCCCHHHHH
T ss_pred             ccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHH-Hhccccccccccc
Confidence            99876655332222 11   011      11133   5899999 799999999988765443321 1222333444444


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-
Q 013235          363 AGHAVLKVIQKDKLQNNAHVVGSYLKE---RLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-  437 (447)
Q Consensus       363 aala~L~~i~~~~l~~~~~~~g~~l~~---~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-  437 (447)
                      ++.+.+...  +...+...++.+.+++   .+.+..++.++ .-+++ .|+++++++...-.  ........+++++|+ 
T Consensus       310 ~~~a~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi-~~~~p~gg~f~w~~l~~~~~--~~~~~~~~~l~~~ll~  384 (431)
T d1m7ya_         310 LLSAMLSDK--KLTKNYIAENHKRLKQRQKKLVSGLQKSGI-SCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVY  384 (431)
T ss_dssp             HHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHH
T ss_pred             hhhhhhccc--hhhhhhhhhhhhhhhhhhhhhhhhhhcCCc-EEecCCceeEEEEECccccc--cCcccCHHHHHHHHHH
Confidence            444443211  1111222222222322   23333333333 33333 47889898843211  112233456778776 


Q ss_pred             hCCceeec
Q 013235          438 GICALFFS  445 (447)
Q Consensus       438 ~~Gvlv~~  445 (447)
                      +.||++.+
T Consensus       385 ~~gV~v~P  392 (431)
T d1m7ya_         385 EVHLNISP  392 (431)
T ss_dssp             TSCEECEE
T ss_pred             HCCEEEEe
Confidence            46999865

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.9e-16  Score=155.32  Aligned_cols=307  Identities=10%  Similarity=0.014  Sum_probs=170.1

Q ss_pred             EEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHHHHHHH
Q 013235          102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANELAIMM  177 (447)
Q Consensus       102 lD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e~Aik~  177 (447)
                      |+|.-|..  -+. .+|.|.+|+.+.++...+  +.... .+....+++.+.+.+.  .+.++|++++++++++..++..
T Consensus         2 ~~~~~~~~--df~-~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~   77 (361)
T d1d2fa_           2 LPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ   77 (361)
T ss_dssp             EECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred             cCcCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhh
Confidence            55555444  344 679999999988765321  11111 2344455556655543  3467899999999999998875


Q ss_pred             HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (447)
Q Consensus       178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa  257 (447)
                      ..  ..+++|++.+++|.+..........           .+..++... ..+.|..|    .+.+++.+..   .++++
T Consensus        78 l~--~~gd~Vlv~~P~y~~~~~~~~~~g~-----------~~~~v~~~~-~~~~~~~d----~~~~~~~~~~---~~~~~  136 (361)
T d1d2fa_          78 WS--ETGEGVVIHTPAYDAFYKAIEGNQR-----------TVMPVALEK-QADGWFCD----MGKLEAVLAK---PECKI  136 (361)
T ss_dssp             SS--CTTCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECEE-CSSSEECC----HHHHHHHHTS---TTEEE
T ss_pred             cc--ccccccccccccccchhHHHHhhcc-----------eEEeecccc-cccccccc----cccchhhccc---CCcee
Confidence            42  2567899999999766543322211           111111110 11112223    4566666642   35656


Q ss_pred             EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-CCcccc
Q 013235          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLG  333 (447)
Q Consensus       258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig  333 (447)
                      +++...++++|.+. +.+.+++|.++|+++|+++|+||+|.+|-+.+...-.+... ...+.+   ++||.++ +|+++|
T Consensus       137 i~l~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~v~~~s~SK~~~~~g~R~g  214 (361)
T d1d2fa_         137 MLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV-ARGDWALLTSGSKSFNIPALTGA  214 (361)
T ss_dssp             EEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT-CCSSEEEEECSHHHHTCGGGCCE
T ss_pred             EEeccccccccccc-chhhhhhhhhhhhhhheeeeecccccccccccccccccccc-cccccccccccccccccccccce
Confidence            65555577777654 78889999999999999999999999886555211111111 122343   4689888 689999


Q ss_pred             ccccCH-HHHHhhcCC-ccc-ccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeec
Q 013235          334 AVVTTP-EIAEVLTRR-NYF-NTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGR  407 (447)
Q Consensus       334 av~~~~-~i~~~l~~~-~~~-~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~  407 (447)
                      +++... ...+..... ... .....+..++++++..++...+  +.+....+++.+.+.+.+.+.   .+.+. ..+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~p~g  291 (361)
T d1d2fa_         215 YGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA---FPELNWQIPQS  291 (361)
T ss_dssp             EEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCCSB
T ss_pred             eeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhh---cccccccccCc
Confidence            986553 332222111 111 1122233444444444443211  112222333333333333332   22222 22334


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS  445 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~  445 (447)
                      |+++++++....    .   ...+++++|+++ ||++.+
T Consensus       292 g~~~~~~l~~~~----~---~~~~~~~~Ll~~~gv~v~p  323 (361)
T d1d2fa_         292 TYLAWLDLRPLN----I---DDNALQKALIEQEKVAIMP  323 (361)
T ss_dssp             CSEEEEECGGGC----C---CHHHHHHHHHHTTCEECEE
T ss_pred             eeEEEEEccCCC----C---CHHHHHHHHHHhCCEEEEe
Confidence            778888873211    1   135688888665 999864

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.73  E-value=1.2e-16  Score=159.61  Aligned_cols=320  Identities=12%  Similarity=0.018  Sum_probs=174.4

Q ss_pred             ecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccccccc-----chHHHHHHHHHHHhC--------CCCCce
Q 013235           95 DENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKM--------PGNLKV  160 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~~~~-----~~~~~elae~L~~~~--------~~~~~~  160 (447)
                      ...++.+|||..|.......- ..+.+++++.+.++...  ...|+     .+.+..+++.+.+.+        +...++
T Consensus        26 ~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~  103 (412)
T d1bw0a_          26 SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN  103 (412)
T ss_dssp             CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred             CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCC--CCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCe
Confidence            345667899887754321111 24667778877765431  12232     233334444444432        234578


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235          161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (447)
Q Consensus       161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (447)
                      |++++++++|+..+++...  ..++.|++.+++|++....+...             |...+..|....+.|..+    .
T Consensus       104 I~it~G~~~al~~~~~~l~--~~Gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~~~~~~~----~  164 (412)
T d1bw0a_         104 VVLCSGGSHGILMAITAIC--DAGDYALVPQPGFPHYETVCKAY-------------GIGMHFYNCRPENDWEAD----L  164 (412)
T ss_dssp             EEEESHHHHHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEEEEGGGTTEEC----H
T ss_pred             EEEecccccchhhhhhhhh--ccccceeeeeccchhhhhhhhcc-------------Cccccccccccccccchh----h
Confidence            9999999999999998543  35688999999998766554332             222333332222223233    4


Q ss_pred             HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cc---cCCC
Q 013235          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EA---HGVV  316 (447)
Q Consensus       241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~---~gv~  316 (447)
                      +++++.+.   +.....++..|. +++|.+. +.+.+++|.++|++|++++|.||+|.+|...|...... ..   ....
T Consensus       165 ~~l~~~~~---~~~~~~~l~np~-NPtG~~~-~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T d1bw0a_         165 DEIRRLKD---DKTKLLIVTNPS-NPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETT  239 (412)
T ss_dssp             HHHHHHCC---TTEEEEEEESSC-TTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCS
T ss_pred             HHHHhhhh---cccccccccccc-ccccccc-hhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccc
Confidence            45554432   333445555555 5555554 78999999999999999999999999997766322111 11   1122


Q ss_pred             CCEE---Eeecccc-CCccccccccCH------HHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013235          317 PDIV---TMAKGIG-NGIPLGAVVTTP------EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY  386 (447)
Q Consensus       317 pDiv---t~sK~lg-~G~pigav~~~~------~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~  386 (447)
                      ...+   ++||.++ .|+|+|++++++      +++..... ....+.+.++..++++.+.+.. ..++..+..++.-+.
T Consensus       240 ~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  317 (412)
T d1bw0a_         240 VPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR-VGMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEE  317 (412)
T ss_dssp             CCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH-HHHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHH
T ss_pred             cccccccccCccCccCCCCcccccccchhhcchhhhhhhcc-ccccccCCchhhhhhccccccc-ccccccccccchhHH
Confidence            2233   4789998 699999998753      23222211 1223334444544444443321 111222222222222


Q ss_pred             HHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       387 l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      -++.+.+...+...+... +..|+++++.+.........   ...+++++|++ .||++.+
T Consensus       318 ~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~---~~~~~~~~ll~~~gV~v~P  375 (412)
T d1bw0a_         318 SAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIK---TDVEFFEKLLEEENVQVLP  375 (412)
T ss_dssp             HHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCC---SHHHHHHHHHHHHCEECEE
T ss_pred             HHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcCCCC---CHHHHHHHHHHhCCEEEEe
Confidence            222233222232223333 44577888887422111111   13467777765 5998864

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.1e-16  Score=155.60  Aligned_cols=286  Identities=12%  Similarity=0.071  Sum_probs=179.8

Q ss_pred             ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC---CCCceEEEcCCHHHHH
Q 013235           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEAN  171 (447)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~---~~~~~v~~~~sGseA~  171 (447)
                      +..++..|++..|-  ++++ .++.+.+++.+++...  ....|+.....+|.+.+++++.   ...++|++++++++|+
T Consensus        15 ~~~~~d~~~l~~~e--np~~-~p~~i~~~~~~~~~~~--~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l   89 (334)
T d2f8ja1          15 ETEKRDKTYLALNE--NPFP-FPEDLVDEVFRRLNSD--ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (334)
T ss_dssp             CCCCCCSEECSSCC--CSSC-CCHHHHHHHHHHCCTT--GGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHH
T ss_pred             cccCCCceEEECCC--CCCC-CCHHHHHHHHHHhhcc--hhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHH
Confidence            44677888877664  3566 5789999998887653  2234555666788888888763   3467899999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      .++++.      .++|++.+++|.+....+...+             ...+..|......+  +            +...
T Consensus        90 ~~l~~~------~d~v~i~~P~y~~~~~~~~~~g-------------~~~v~v~~~~~~~~--~------------~~~~  136 (334)
T d2f8ja1          90 YVMMLM------FDRSVFFPPTYSCYRIFAKAVG-------------AKFLEVPLTKDLRI--P------------EVNV  136 (334)
T ss_dssp             HHHHHH------SSEEEECSSCCHHHHHHHHHHT-------------CCEEECCCCTTSCC--C------------CCCC
T ss_pred             HHHhhh------ccccccccccccccccchhccC-------------Cccccccccccccc--c------------cccc
Confidence            887652      2789999999987765554432             22223222111111  0            0111


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeecccc-
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-  327 (447)
                      ++....++..|. +.+|.+..    .++|.++ .++++++|+||++.++.... ..   ......+.++   ++||.++ 
T Consensus       137 ~~~~~l~l~nP~-NPtG~~~s----~~~l~~~-~~~~~~ii~Dd~~~~~~~~~-~~---~~~~~~~~~i~~~S~SK~~~~  206 (334)
T d2f8ja1         137 GEGDVVFIPNPN-NPTGHVFE----REEIERI-LKTGAFVALDEAYYEFHGES-YV---DFLKKYENLAVIRTFSKAFSL  206 (334)
T ss_dssp             CTTEEEEEESSC-TTTCCCCC----HHHHHHH-HTTTCEEEEECTTGGGTCCC-CG---GGGGTCSSEEEEEESTTTSSC
T ss_pred             ccceEEEecccc-cccceeec----HHHhhcc-ccceeEEeecccchhhcccc-cc---cccccCceEEEEecCccccch
Confidence            223445666774 55566654    4555554 56899999999997664332 11   1112223333   6899998 


Q ss_pred             CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg  406 (447)
                      .|+++|++++++++++.+....  .+++.+..+..++.+.++..+. ++..+..++..+++.+.|++    ++ +.-+++
T Consensus       207 ~G~R~G~~~~~~~~i~~l~~~~--~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g-~~~~~~  279 (334)
T d2f8ja1         207 AAQRVGYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE----MG-YRITDS  279 (334)
T ss_dssp             TTTCEEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH----HT-CEECCC
T ss_pred             hhhhhhhcccchHHHHHHHHhh--cccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHH----CC-CeECCC
Confidence            7999999999999998886432  4566678888877777753211 12233344444455554444    34 233466


Q ss_pred             cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       407 ~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .|.|+++.+..         ....++.+.|+++||+++
T Consensus       280 ~g~f~~~~~~~---------~~~~~~~~~L~~~GI~vr  308 (334)
T d2f8ja1         280 RGNFVFVFMEK---------EEKERLLEHLRTKNVAVR  308 (334)
T ss_dssp             CSSEEEEECCH---------HHHHHHHHHHHHTTEECE
T ss_pred             CceEEEEECCC---------CCHHHHHHHHHHCCCEEC
Confidence            78787776521         235789999999999985

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.7e-17  Score=159.40  Aligned_cols=263  Identities=14%  Similarity=0.143  Sum_probs=166.6

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+|+++...+|.++|+++++.+.++|+++++++||+..+++.... .|...|++..++|......+...           
T Consensus        51 ~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~-pgd~~Vl~~~P~y~~~~~~~~~~-----------  118 (354)
T d1fg7a_          51 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYCPPTYGMYSVSAETI-----------  118 (354)
T ss_dssp             TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC-TTTCEEEECSSSCTHHHHHHHHH-----------
T ss_pred             hcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc-cccccccccccccccchhhhhcc-----------
Confidence            457777778999999999988888999999999999999985432 23345777889987665544333           


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                        |...+..|.  ...|..|    .++++..+     .++.++++.+.++++|.+. +++.++.+.+.++ ++.++|+||
T Consensus       119 --g~~v~~~~~--~~~~~~d----~~~l~~~~-----~~~~~v~~~~pnNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd  183 (354)
T d1fg7a_         119 --GVECRTVPT--LDNWQLD----LQGISDKL-----DGVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADE  183 (354)
T ss_dssp             --TCEEEECCC--CTTSCCC----HHHHHTSC-----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEEC
T ss_pred             --Cceeecccc--ccccccc----hhhhhhcc-----cccceeeccCCCccceeEe-eeccccccccccc-ccccccccc
Confidence              222222222  1234444    34443322     2555666666666667665 5666777777665 578888899


Q ss_pred             cccCccccCCCcccccccCCCCCEE---Eeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      .+..|..... .  .......+.++   +|||.+| .|+|+||+++++++++.+...  ...+..|..++.++.+++..-
T Consensus       184 ~~~~f~~~~~-~--~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~--~~~~~~~~~~~~~a~~~~~~~  258 (354)
T d1fg7a_         184 AYIEFCPQAS-L--AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKV--IAPYPLSTPVADIAAQALSPQ  258 (354)
T ss_dssp             TTGGGSGGGC-S--GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHH--SCSSCSCHHHHHHHHHHTSHH
T ss_pred             cchhhccccc-c--chhhcccccceEEeCCccccCCCccccccccccchhhhhhhhh--cCccchhhHHHHHHHHHHhhh
Confidence            8887754331 1  12223344444   6999999 899999999999999888642  345566665655555544221


Q ss_pred             hhhhHH---HHHHHHHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          372 QKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       372 ~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ..+.+.   +++.+..+++.+.|.    +.+.+..+ ++.|+|+++++.+           ..++++.|+++||++++
T Consensus       259 ~~~~~~~~~~~~~~~r~~l~~~l~----~~~~~~~~~p~~~~f~~~~~~~-----------~~~~~~~L~~~gIlvr~  321 (354)
T d1fg7a_         259 GIVAMRERVAQIIAEREYLIAALK----EIPCVEQVFDSETNYILARFKA-----------SSAVFKSLWDQGIILRD  321 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HSTTEEEECCCSSSEEEEEETT-----------HHHHHHHHHHTTEECEE
T ss_pred             ccccccccchhhhhHHHHHHHHHH----hCCCcceeCCCCceEEEEeCCC-----------HHHHHHHHHHCCcEEec
Confidence            111222   223333334443333    34555443 5678889888731           35688999999999974

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.71  E-value=6.2e-16  Score=155.36  Aligned_cols=279  Identities=12%  Similarity=0.074  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHHhCC----CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccC
Q 013235          141 HAIADFAEALASKMP----GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (447)
Q Consensus       141 ~~~~elae~L~~~~~----~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~  216 (447)
                      +...++++.+.+..+    .+.++|++++++++|++.+++...  ..++.|++..++|.+........            
T Consensus        87 ~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~--~~Gd~Vlv~~P~y~~~~~~~~~~------------  152 (428)
T d1iaya_          87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--DPGDAFLVPSPYYPAFNRDLRWR------------  152 (428)
T ss_dssp             HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--CTTCEEEEESSCCTTHHHHTTTT------------
T ss_pred             HHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC--CCCCEEEEccCCchHHHHHHHHh------------
Confidence            344445555555432    345689999999999999987543  25688999999997654322111            


Q ss_pred             CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (447)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv  296 (447)
                      .|+..++.+......|..|.+.+...++.... ..++..+.++..| ++++|.+. +.+.+++|.++|++||++||.||+
T Consensus       153 ~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~l~nP-~NPtG~~~-s~~~~~~i~~~a~~~~~~vI~De~  229 (428)
T d1iaya_         153 TGVQLIPIHCESSNNFKITSKAVKEAYENAQK-SNIKVKGLILTNP-SNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEI  229 (428)
T ss_dssp             TCCEEEEECCCTTTTTCCCHHHHHHHHHHHHH-TTCCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECT
T ss_pred             cCCeEEEeecccccccccccccccchhhhhhc-cCCCceEEEEccC-CCcccccc-cccccchhheeeccCcEEEEeccc
Confidence            14444554444444565664443333333322 2333344555556 45566554 788899999999999999999999


Q ss_pred             ccCccccCCCcccc-ccc------CCCCC----EEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCC-CChHHHH
Q 013235          297 QAGFARTGSHFWGF-EAH------GVVPD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFG-GNPVCTA  362 (447)
Q Consensus       297 ~tGfgr~G~~~~~~-~~~------gv~pD----ivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~-~np~a~a  362 (447)
                      |..+...+.++..+ +..      ...+|    +-+|||.++ .|+++|++++ ++++.+.+...   .+++ .+.....
T Consensus       230 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~---~~~~~~~~~~~~  306 (428)
T d1iaya_         230 YAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM---SSFGLVSTQTQY  306 (428)
T ss_dssp             TGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH---HTTSCCCHHHHH
T ss_pred             ccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhh---hccccccccccc
Confidence            99886665333222 111      11223    226899997 6999999997 55666665432   2222 2333333


Q ss_pred             HHHHHHH---HHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 013235          363 AGHAVLK---VIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (447)
Q Consensus       363 aala~L~---~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~  437 (447)
                      ++.+.+.   .+++  ++..+..+++.+.+.+.|    +..++-...+..|+|+++++...-.  ........++++.|+
T Consensus       307 ~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L----~~~gi~~~~p~gg~f~w~~l~~~~~--~~~~~~~~~l~~~Ll  380 (428)
T d1iaya_         307 FLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGL----EVVGIKCLKNNAGLFCWMDLRPLLR--ESTFDSEMSLWRVII  380 (428)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCCBCCCSSSSEEEEECGGGCS--SSSHHHHHHHHHHHH
T ss_pred             chhhhhhhhccccccccccccccchhHHHHHHHH----HhCCCEEecCCcceEEEEECccccc--cCCCCCHHHHHHHHH
Confidence            3333331   1110  112222333333344433    3333322224448889999853211  122223346788887


Q ss_pred             h-CCceeec
Q 013235          438 G-ICALFFS  445 (447)
Q Consensus       438 ~-~Gvlv~~  445 (447)
                      + .||++.+
T Consensus       381 ~~~gV~v~P  389 (428)
T d1iaya_         381 NDVKLNVSP  389 (428)
T ss_dssp             HTSCEECEE
T ss_pred             HhCCEEEEc
Confidence            5 5999864

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.3e-16  Score=154.11  Aligned_cols=311  Identities=12%  Similarity=0.060  Sum_probs=184.7

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccccchHHHHHHHHHHHhCCC--CC-ceEEEcCCHHHHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKMPG--NL-KVVFFTNSGTEANELA  174 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~~~~~~elae~L~~~~~~--~~-~~v~~~~sGseA~e~A  174 (447)
                      ..||+..|...  +. .++.+.+|+.+.++...+  +...+..+.+..+++.+.+..+.  .. +.|++++++++|+..+
T Consensus        27 ~~i~l~~G~Pd--~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~  103 (382)
T d1u08a_          27 QAINLSQGFPD--FD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA  103 (382)
T ss_dssp             TCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred             CCEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHH
Confidence            55888877663  33 568899999998876421  12222233444455555554332  23 3599999999999999


Q ss_pred             HHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (447)
Q Consensus       175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (447)
                      ++....  .++.|++.+++|...........             ...+..+... ..+..|    .+++++.+.   ++.
T Consensus       104 ~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~-~~~~~d----~~~l~~~~~---~~~  160 (382)
T d1u08a_         104 ITALVR--NGDEVICFDPSYDSYAPAIALSG-------------GIVKRMALQP-PHFRVD----WQEFAALLS---ERT  160 (382)
T ss_dssp             HHHHCC--TTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECCT-TTCCCC----HHHHHHHCC---TTE
T ss_pred             Hhhccc--ccceEEEecccccchhhhhhhcc-------------ccceeccccc-ccccCC----HHHHhhhhc---cCc
Confidence            975443  56789999999976655443321             1111111111 122233    455555433   323


Q ss_pred             eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCCEEEeecccc-CC
Q 013235          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMAKGIG-NG  329 (447)
Q Consensus       255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pDivt~sK~lg-~G  329 (447)
                      .+.+++.| ++.+|.+. +.+.+++|.++|+++++++|.||++.-+...+.........    +...-+.++||.++ .|
T Consensus       161 ~~i~l~~P-~NPtG~v~-~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG  238 (382)
T d1u08a_         161 RLVILNTP-HNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG  238 (382)
T ss_dssp             EEEEEESS-CTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred             cEEEECCC-Cccccccc-ccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc
Confidence            34445555 45566554 77889999999999999999999997664443111111011    11112336889998 79


Q ss_pred             ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecce
Q 013235          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl  409 (447)
                      +++|++++++++++.+.......+++.+...+.++.++|+.-  ++..++.++.-+.-++.|.+.....++......-|+
T Consensus       239 ~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~  316 (382)
T d1u08a_         239 WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTY  316 (382)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSS
T ss_pred             ccchhhhccchhHHHHHhhhcccccccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceE
Confidence            999999999999888765545567888888888888888632  233333333322233333333333333333345577


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeecc
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFSQ  446 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~~  446 (447)
                      ++++++....   ..+   ..+++++|+ +.||++.++
T Consensus       317 ~~~~~~~~~~---~~d---~~e~~~~ll~e~gV~v~PG  348 (382)
T d1u08a_         317 FLLVDYSAVS---TLD---DVEFCQWLTQEHGVAAIPL  348 (382)
T ss_dssp             EEEEECTTTC---CSC---HHHHHHHHHHHSCEECEEG
T ss_pred             EEEEecCCCC---CCC---HHHHHHHHHHHCCEEEEcc
Confidence            8888874211   011   345777765 579998753

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.64  E-value=4.9e-15  Score=144.49  Aligned_cols=202  Identities=13%  Similarity=0.053  Sum_probs=130.0

Q ss_pred             CCCCHHHHHHHHHHHHhccc---cc-c---cc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCC
Q 013235          114 GHCHPYVVDSIVNQIKRIQH---ST-V---LY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (447)
Q Consensus       114 Gh~~p~v~~A~~~~l~~~~~---~~-~---~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~  185 (447)
                      |.-.|++++|+.+..+.+..   .. .   .. ..+.+..+.++|+++++  .+.+++++||++||.+++....  .+++
T Consensus        12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g--~e~~~~t~g~t~a~~~~~~al~--~~gd   87 (364)
T d2e7ja1          12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG--CDVARVTNGAREAKFAVMHSLA--KKDA   87 (364)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT--SSEEEEESSHHHHHHHHHHHHC--CTTC
T ss_pred             CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhC--cCEEEEECcHHHHHHHHHHHHh--CCCc
Confidence            44568888887653322110   00 0   00 11345668899999984  5789999999999999997542  3567


Q ss_pred             eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-CCCeEEEEEcccc
Q 013235          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQ  264 (447)
Q Consensus       186 ~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~~~~aavi~Epi~  264 (447)
                      .||+.+++|+.....+.. .+.          .+..++..  ....+..|    .+++++.++... ..+++.|+++.++
T Consensus        88 ~Vi~~~~~h~s~~~~~~~-~g~----------~v~~v~~~--~~~~~~i~----~~~l~~~i~~~~k~~~~~lv~i~~~~  150 (364)
T d2e7ja1          88 WVVMDENCHYSSYVAAER-AGL----------NIALVPKT--DYPDYAIT----PENFAQTIEETKKRGEVVLALITYPD  150 (364)
T ss_dssp             EEEEETTCCHHHHHHHHH-TTC----------EEEEECCC--CTTTCCCC----HHHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             EEEeecccccccchHHHh-ccc----------eEEEeeec--cccccccC----HHHHHhhhhhhcccCCceEEEeecCC
Confidence            788877776543333221 111          12333321  11223344    567777776432 3467888888888


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHH
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA  342 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~  342 (447)
                      +++|.+.+    +++|.++|++||+++|+||+|+ +|..+.   ....++  .|++++|  |.++++-.+|+++++++++
T Consensus       151 n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~---~~~~~g--~D~~~~S~~K~~~~~g~~g~l~~~~~~~  220 (364)
T d2e7ja1         151 GNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV---SLKEIG--ADFIVGSGHKSMAASGPIGVMGMKEEWA  220 (364)
T ss_dssp             TTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC---CHHHHT--CSEEEEEHHHHSSCCSSCEEEEECTTTT
T ss_pred             CCCceeec----chhheeccccccchhhccccch-hhhhhh---cccccc--cceeeeccccccCCCCCEEEEEECHHHH
Confidence            88998887    9999999999999999999994 543321   112233  5888876  9998654689999999887


Q ss_pred             Hhhc
Q 013235          343 EVLT  346 (447)
Q Consensus       343 ~~l~  346 (447)
                      +.+.
T Consensus       221 ~~~~  224 (364)
T d2e7ja1         221 EIVL  224 (364)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            7654

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.64  E-value=1.6e-14  Score=142.10  Aligned_cols=305  Identities=12%  Similarity=0.061  Sum_probs=186.4

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc------ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~------~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      +++.|+|..      ..|..+..|.+|+.+.++......      .........++.+.|+++++.+.++|+|++|||+|
T Consensus         6 ~~~~yld~~------~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a   79 (381)
T d1elua_           6 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   79 (381)
T ss_dssp             TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCCEEeeCC------cccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence            456788854      346567779999988876542211      11223445678888999998777889999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      +..++...+ ..+++.|++.+..|++.......+..         ..|+.....|....... .+   ..+.+++.   .
T Consensus        80 ~~~~~~~l~-~~~g~~i~~~~~~~~s~~~~~~~~~~---------~~g~~~~~v~~~~~~~~-~~---~~~~l~~~---i  142 (381)
T d1elua_          80 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAA---------RFGITYRFFPVAATLNQ-GD---AAAVLANH---L  142 (381)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHH---------HHCCEEEEECCGGGSSS-SC---HHHHHHTT---C
T ss_pred             hhhcchhhh-hcCCceEEEeccccceeeeccccccc---------ccccccccccccccccc-ch---HHHHHHhh---h
Confidence            999987543 33567888888877654332221110         01332222222111111 11   12223222   2


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh----CCEEEEeccccCccccCCCcccccccCCCCCEEEee--c
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA----GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--K  324 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~----g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K  324 (447)
                       ..++.++++..+++++|.+.+    +++|.++|++|    |+++++|.+|+ +|..   .  ++.....+|+++++  |
T Consensus       143 -~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~---~--~~~~~~~~D~~~~s~~K  211 (381)
T d1elua_         143 -GPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL---P--LDFSRLEVDYYAFTGHK  211 (381)
T ss_dssp             -CTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB---C--CCTTTSCCSEEEEESSS
T ss_pred             -cccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc---c--ccccccccccccccccc
Confidence             347889999999999999988    99999999985    69999999985 4421   1  22333467988766  9


Q ss_pred             cccCCccccccccCHHHHHhhcCCcc----------------------cccCCCChHHHHHHHHHHHHHhhh----hHHH
Q 013235          325 GIGNGIPLGAVVTTPEIAEVLTRRNY----------------------FNTFGGNPVCTAAGHAVLKVIQKD----KLQN  378 (447)
Q Consensus       325 ~lg~G~pigav~~~~~i~~~l~~~~~----------------------~~T~~~np~a~aaala~L~~i~~~----~l~~  378 (447)
                      .+++...+|++..+++..+.+.+...                      +.....+.....+..++++.+++.    ...+
T Consensus       212 ~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~  291 (381)
T d1elua_         212 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ  291 (381)
T ss_dssp             TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchh
Confidence            98876677888888887765542100                      011123344555566677766543    2346


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       379 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +..++.+++.++|+++.. ..+++.-..++.++.+.+....        ....+.+.|.++||.++
T Consensus       292 ~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~vsf~~~~~~--------~~~~i~~~L~~~gi~v~  348 (381)
T d1elua_         292 AICQRSEFLWRGLNQLPH-VHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLR  348 (381)
T ss_dssp             HHHHHHHHHHHHHHHSTT-EEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECE
T ss_pred             hhhhHHHHHHHHHhcCCC-eEecCCCCccccEEEEEcCCCC--------CHHHHHHHHHhCCcEEE
Confidence            677777888888777621 1112222234556666653211        13567888999999875

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.61  E-value=5.6e-15  Score=147.55  Aligned_cols=220  Identities=15%  Similarity=0.062  Sum_probs=127.9

Q ss_pred             EEecCCcccccCCCC--CHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC--------CCCceEEEcCCHHHH
Q 013235          102 LDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP--------GNLKVVFFTNSGTEA  170 (447)
Q Consensus       102 lD~~~g~~~~~lGh~--~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~--------~~~~~v~~~~sGseA  170 (447)
                      ||+.-|.....-|-.  .|.|.+|.+ ++..-......|. .....+|.+.+++++-        .....+.-+.+|..+
T Consensus        32 InL~iG~~~d~~g~~~~~~~V~~A~~-~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (412)
T d1yaaa_          32 VDLGIGAYRDDNGKPWVLPSVKAAEK-LIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA  110 (412)
T ss_dssp             EECSSCCCBCTTSCBCCCHHHHHHHH-HHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             EEeecCCCcCCCCCCCCcHHHHHHHH-HHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence            566555433333432  266777643 3332111112233 4455677777766541        111123334556666


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      ...++.+.....+++.|++.+++|..+...+....             ......|......+..+    .+.+++.+...
T Consensus       111 ~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  173 (412)
T d1yaaa_         111 LHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG-------------LKTATYPYWANETKSLD----LNGFLNAIQKA  173 (412)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT-------------CCEEEEECEETTTTEEC----HHHHHHHHHHS
T ss_pred             HHHHHHHHhccCCCCEEecccccCchhHHHHHHcC-------------Cceeccccccccccccc----chhhhcccccC
Confidence            65665544444567899999999987766554332             22222222222222223    34455555443


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc------ccccCCCCCEE---E
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG------FEAHGVVPDIV---T  321 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~------~~~~gv~pDiv---t  321 (447)
                      . +...++++.+-++++|.+. +++.+++|.++|+++++++|.||+|.+|...+.....      .+..+..+.++   .
T Consensus       174 ~-~~~~~i~i~~P~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  251 (412)
T d1yaaa_         174 P-EGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS  251 (412)
T ss_dssp             C-TTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred             C-CceEEEEecCCCCCccccC-CHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEe
Confidence            3 3455666666677788765 7999999999999999999999999999765521111      11223344444   5


Q ss_pred             eecccc-CCccccccccCHHH
Q 013235          322 MAKGIG-NGIPLGAVVTTPEI  341 (447)
Q Consensus       322 ~sK~lg-~G~pigav~~~~~i  341 (447)
                      +||.++ .|+|+|++++++++
T Consensus       252 ~SK~~~~~G~RiG~~~~~~~~  272 (412)
T d1yaaa_         252 FAKNAGMYGERVGCFHLALTK  272 (412)
T ss_dssp             CTTTSCCGGGCEEEEEEECCS
T ss_pred             cCCccccCcCceEEEEEchhh
Confidence            899999 69999999987554

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=8.9e-15  Score=145.23  Aligned_cols=311  Identities=13%  Similarity=0.061  Sum_probs=169.8

Q ss_pred             EEecCCcccccCCCC--CHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEEcCCHHHHHH
Q 013235          102 LDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFFTNSGTEANE  172 (447)
Q Consensus       102 lD~~~g~~~~~lGh~--~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~~~sGseA~e  172 (447)
                      ||+.-|.+...-|..  .|.|.+|.. ++.........| +.....+|++.+++++..      ..+.++.+.+++.+..
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~-~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~  107 (397)
T d3tata_          29 VNLSIGLYYNEDGIIPQLQAVAEAEA-RLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGA  107 (397)
T ss_dssp             EECSCCSCCCTTSSCCCCHHHHHHHH-HHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHH
T ss_pred             EEccCCCCcCCCCCCCCcHHHHHHHH-HHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHH
Confidence            677766544445543  256666644 332222222223 355667788888876532      2356666666666555


Q ss_pred             HHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          173 LAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       173 ~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      .++.++.  ...+++.|++.+++|.+....+...+             ...+.+|....+.+..|    .+++.+.+...
T Consensus       108 ~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G-------------~~~~~v~~~~~~~~~~~----~~~~~~~~~~~  170 (397)
T d3tata_         108 LKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAG-------------FEVSTYPWYDEATNGVR----FNDLLATLKTL  170 (397)
T ss_dssp             HHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTT-------------CCCEECCCCCTTTSSCC----HHHHHHHHTTC
T ss_pred             HHHHHHHhhhcCCCCcceecccCccccHHHHHHcC-------------CEEEEEecchhhccccc----hHHHHHHhhhc
Confidence            4444332  23467889999999987776655432             22233333222333333    34444444433


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC-ccccc-ccCCCCCEE---Eeecc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWGFE-AHGVVPDIV---TMAKG  325 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~-~~~~~-~~gv~pDiv---t~sK~  325 (447)
                      . .+..++++...++++|.+. +++.+++|.++|++|++++|.||+|.+|...+.. ..... ..+..++++   .+||.
T Consensus       171 ~-~~~~~~~~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  248 (397)
T d3tata_         171 P-ARSIVLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKI  248 (397)
T ss_dssp             C-SSCCCEECSSSCSSSCCCC-CHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHH
T ss_pred             c-cccEEEEecCCCCCCCeeC-CHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccc
Confidence            2 3445555555667777665 8999999999999999999999999998654421 11111 122223333   58899


Q ss_pred             cc-CCccccccccCHHHHHhhcCC------cccccCC-CChHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHH
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLTRR------NYFNTFG-GNPVCTAAGHAVLKVI-QKDKLQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~~~------~~~~T~~-~np~a~aaala~L~~i-~~~~l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      ++ .|+|+|+++++..+++.....      ...+++. .+...++++...+..- ...++.++++.+.++++.+...+.+
T Consensus       249 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  328 (397)
T d3tata_         249 FSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK  328 (397)
T ss_dssp             HTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 599999999765443322210      1123333 3334444433333211 0123344455555555555544444


Q ss_pred             hcCCe-------eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235          397 KYGII-------GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS  445 (447)
Q Consensus       397 ~~~~i-------~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~  445 (447)
                      .+...       ......|+|.++.+.             .+++++|++ .||++.+
T Consensus       329 ~L~~~~~~~~~~~~~~~~G~F~~~~ls-------------~e~~~~L~~e~~V~l~~  372 (397)
T d3tata_         329 VLSTEMPERNFDYLLNQRGMFSYTGLS-------------AAQVDRLREEFGVYLIA  372 (397)
T ss_dssp             TTTTTCTTSCTTHHHHCCSSBCCCCCC-------------HHHHHHHTTTTCEECCS
T ss_pred             HHHHhCCCCceEEEcCCCceEEecCcC-------------HHHHHHHHHhCCEEeCC
Confidence            33211       113556777776551             234566655 5887754

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.54  E-value=4.1e-14  Score=140.51  Aligned_cols=223  Identities=17%  Similarity=0.062  Sum_probs=129.8

Q ss_pred             EEecCCcccccCCC--CCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEEc--CCHHHH
Q 013235          102 LDAFGGIATVCCGH--CHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFFT--NSGTEA  170 (447)
Q Consensus       102 lD~~~g~~~~~lGh--~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~~--~sGseA  170 (447)
                      ||+..|..-..-|.  ..|.|.+|..+.++...  +..| +.....+|.+.+++++-.      ..+.++.+  ..|+.+
T Consensus        31 InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~  108 (401)
T d7aata_          31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM--DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS  108 (401)
T ss_dssp             EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             EEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCC--CCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHH
Confidence            55555532222232  24778888776665431  1123 233455666666665411      12334333  334444


Q ss_pred             HHHHHHHHHhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          171 NELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       171 ~e~Aik~ar~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ..+...+++.+ ..++.|++.+++|++........             |...+..|......|..+    .+.+++.+..
T Consensus       109 ~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-------------g~~~~~~~~~~~~~~~~~----~~~~~~~~~~  171 (401)
T d7aata_         109 LRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-------------GLQLQAYRYYDPKTCSLD----FTGAMEDISK  171 (401)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECEETTTTEEC----HHHHHHHHTT
T ss_pred             HHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHc-------------CCeEEEEecccccccccc----HHHHHHHHhc
Confidence            44444444443 35788999999998876655443             222333332222222223    4455555554


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc--c-cccccCCCCCE---EEee
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF--W-GFEAHGVVPDI---VTMA  323 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~--~-~~~~~gv~pDi---vt~s  323 (447)
                      ..+ +..++++..-++++|.+. +.+.+++|.++|++|++++|.||+|.+|...+...  + ........+++   ..++
T Consensus       172 ~~~-~~~~iii~~p~NPTG~~~-s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  249 (401)
T d7aata_         172 IPE-KSIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA  249 (401)
T ss_dssp             SCT-TCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred             CCC-ceEEEEecCCCCCccccC-CHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecc
Confidence            333 455666666677777765 89999999999999999999999999997655211  1 01111222333   3688


Q ss_pred             cccc-CCccccccccCHHHHHhh
Q 013235          324 KGIG-NGIPLGAVVTTPEIAEVL  345 (447)
Q Consensus       324 K~lg-~G~pigav~~~~~i~~~l  345 (447)
                      |.++ .|+++|+++++.++.+..
T Consensus       250 k~~~~~G~RiG~~~~~~~~~~~~  272 (401)
T d7aata_         250 KNMGLYGERAGAFTVICRDAEEA  272 (401)
T ss_dssp             TTSCCGGGCEEEEEEECSSHHHH
T ss_pred             ccceeeccccceeecchHHHHHH
Confidence            9998 699999999887766544

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=1.5e-14  Score=142.06  Aligned_cols=236  Identities=12%  Similarity=0.000  Sum_probs=137.9

Q ss_pred             CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc-CCc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR-NAY  194 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~-~~y  194 (447)
                      ++.+.++..+.++....     +.....++.+...+.+.. +.+.++++|||++|+.+++.. .  .+++++|++. ...
T Consensus        31 ~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~a-l--~~~~~vi~~~~~~~  102 (366)
T d2aeua1          31 GFLIDEKDKALLNTYIG-----SSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA-L--KPKKVIHYLPELPG  102 (366)
T ss_dssp             CCCCCHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH-H--CCSEEEEECSSSSC
T ss_pred             CCCccHHHHHHHHHhcC-----chhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHH-h--CCCCEEEEecCCCc
Confidence            34455555555544311     122334565655565543 346788999999999999864 2  3666766653 344


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc-cccCCCceeeCC
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE-SIQGVGGIIELA  273 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E-pi~~~gG~~~~~  273 (447)
                      |........+.+            +..+..         +|    ++++++.+.   + ++.+++++ |.+++++.+.  
T Consensus       103 ~~~~~~~~~l~g------------~~~v~~---------~d----~e~l~~~i~---~-~tk~i~~~~p~n~~~~~~~--  151 (366)
T d2aeua1         103 HPSIERSCKIVN------------AKYFES---------DK----VGEILNKID---K-DTLVIITGSTMDLKVIELE--  151 (366)
T ss_dssp             CTHHHHHHHHTT------------CEEEEE---------SC----HHHHHTTCC---T-TEEEEEECBCTTSCBCCHH--
T ss_pred             chhHHHHHHhcC------------CeEECC---------CC----HHHHHHhcC---C-CceEEEEEecCCCCcCCHH--
Confidence            555544444332            222211         23    455655443   3 56677666 4454444333  


Q ss_pred             CChHHHHHHHHHHhCCEEEEeccccCccccCC-CcccccccCCCCCEEEeecccc-CCccccccccCHHHHHhhcCCccc
Q 013235          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYF  351 (447)
Q Consensus       274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~gv~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~  351 (447)
                        -|++|.++|++||+++|+||+|...-..+. +. ....+|  .|++++||+-+ +|+++|++++++++++.+......
T Consensus       152 --~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~-~~~~~~--~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~  226 (366)
T d2aeua1         152 --NFKKVINTAKNKEAIVFVDDASGARVRLLFNQP-PALKLG--ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTK  226 (366)
T ss_dssp             --HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCC-CHHHHT--CSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHhccCcEEEEEecCccccccccccCC-CHhhcC--ceEEEecccccccccceeEEEecHHHHHHHHHHHhc
Confidence              399999999999999999999853211110 11 011233  47887664444 478999999999999988654333


Q ss_pred             ccCCCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHH
Q 013235          352 NTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKD  396 (447)
Q Consensus       352 ~T~~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~  396 (447)
                      .++..+|..+.+++++|+.+.-++   ..++.+++...+.+.+.....
T Consensus       227 ~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~  274 (366)
T d2aeua1         227 FGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELK  274 (366)
T ss_dssp             TTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred             ccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            455667888888888887543222   233344444445555544433

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=5.4e-14  Score=139.39  Aligned_cols=224  Identities=13%  Similarity=0.036  Sum_probs=134.2

Q ss_pred             EEecCCcccccCCC--CCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC--------CCCceEEEcCCHHHH
Q 013235          102 LDAFGGIATVCCGH--CHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP--------GNLKVVFFTNSGTEA  170 (447)
Q Consensus       102 lD~~~g~~~~~lGh--~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~--------~~~~~v~~~~sGseA  170 (447)
                      ||+..|....+=|.  ..|.|.+|..+.++...  +..| +.....+|++.+++++-        ........+.+|+.+
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~--~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
T d2q7wa1          29 INLGIGVYKDETGKTPVLTSVKKAEQYLLENET--TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGA  106 (396)
T ss_dssp             EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHH
T ss_pred             EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCC--CCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHH
Confidence            68777743333343  34788888877766531  1223 23445666666666531        111234456777777


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      ...++.+.......+.|++.+++|.++.......+             ...+..|......+..+    ..++++.....
T Consensus       107 ~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  169 (396)
T d2q7wa1         107 LRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG-------------LEVREYAYYDAENHTLD----FDALINSLNEA  169 (396)
T ss_dssp             HHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTT-------------CEEEEEECEETTTTEEC----HHHHHHHHTTC
T ss_pred             HHHHHHHHhhcccceEEEEecCCCccchHHHHHcC-------------CeeEecccccccccccc----cchHHHHHHHh
Confidence            76666554444567889999999987776665443             22222222111111112    34444444443


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcc-ccc-ccCCCCC---EEEeecc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW-GFE-AHGVVPD---IVTMAKG  325 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~-~~~-~~gv~pD---ivt~sK~  325 (447)
                      .+ +..++++..-++++|.+. +++.+++|.++|++|++++|.||+|.+|...+.... ... ..+..++   +..++|.
T Consensus       170 ~~-~~~~i~~~~P~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~  247 (396)
T d2q7wa1         170 QA-GDVVLFHGCCHNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKN  247 (396)
T ss_dssp             CT-TCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred             cc-CcEEEEecCCcCCcCeec-CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccc
Confidence            33 444555555566777665 789999999999999999999999999966542111 111 1112223   3357899


Q ss_pred             cc-CCccccccccCHHHHHhhc
Q 013235          326 IG-NGIPLGAVVTTPEIAEVLT  346 (447)
Q Consensus       326 lg-~G~pigav~~~~~i~~~l~  346 (447)
                      ++ .|+++|+++++++.++.+.
T Consensus       248 ~~~~G~R~G~~~~~~~~~~~~~  269 (396)
T d2q7wa1         248 FGLYNERVGACTLVAADSETVD  269 (396)
T ss_dssp             TTCGGGCCEEEEEECSSHHHHH
T ss_pred             ccccCCCccccccchhHHHHHH
Confidence            98 5999999999876655443

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.52  E-value=7.2e-14  Score=131.77  Aligned_cols=276  Identities=13%  Similarity=0.006  Sum_probs=144.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235          112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (447)
Q Consensus       112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~  191 (447)
                      +.| +||+|++|+.++....  ....+.++...+++++++++++.+.++|+|++||||||..|+..+..  ++.+++...
T Consensus         9 ~~g-~~P~v~eAl~~~~~~~--~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~--~~~~~~~~~   83 (340)
T d1svva_           9 SVG-MHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR--PWEAVIATQ   83 (340)
T ss_dssp             SSC-CCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC--TTEEEEEET
T ss_pred             CCC-CCHHHHHHHHHHhhcC--CCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh--hcccccccc
Confidence            446 7999999999875543  23334577778999999999987777899999999999999986554  455666665


Q ss_pred             CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc--cCCCCeEEEEEccccCCCce
Q 013235          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGI  269 (447)
Q Consensus       192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~--~~~~~~aavi~Epi~~~gG~  269 (447)
                      ..++.............          ......+...   . .+.    +...+....  ........+++...++++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (340)
T d1svva_          84 LGHISTHETGAIEATGH----------KVVTAPCPDG---K-LRV----ADIESALHENRSEHMVIPKLVYISNTTEVGT  145 (340)
T ss_dssp             TSHHHHSSTTHHHHTTC----------CEEEECCTTS---C-CCH----HHHHHHHHHSCSTTSCEEEEEEEESSCTTSC
T ss_pred             ccceeeeecccccccce----------eeeecccccc---c-ccc----hhHHHHhhhhhcccCCcceeeeecccccccc
Confidence            55544332222211110          0011111100   0 111    111122211  11123445555555556555


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-CcccccccCCCCCEEEeeccccCCcccccc-ccCHHHHHhhcC
Q 013235          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAHGVVPDIVTMAKGIGNGIPLGAV-VTTPEIAEVLTR  347 (447)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~gv~pDivt~sK~lg~G~pigav-~~~~~i~~~l~~  347 (447)
                      +. +.+.+..+.+.|+++|+++++|+++.+...... ..+.........++.++++..+.+.+.+.. ............
T Consensus       146 ~~-~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (340)
T d1svva_         146 QY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARH  224 (340)
T ss_dssp             CC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHH
T ss_pred             cc-cHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhh
Confidence            54 456688899999999999999999976432221 122212222234666777666654332222 222222221111


Q ss_pred             C--cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEE
Q 013235          348 R--NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (447)
Q Consensus       348 ~--~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel  415 (447)
                      .  ....+......+.+++.+.++........++......+++..|+.+    +.....+..+.++.+.+
T Consensus       225 ~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~p~~~~~v~~~~  290 (340)
T d1svva_         225 LIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC----GIRLAWPSASNQLFPIL  290 (340)
T ss_dssp             HHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCCSSSEECBEE
T ss_pred             hcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC----CCeeecCCCceEEEEeC
Confidence            1  1122333333344443333332222334455555555665555554    32222234455555554

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=3.4e-14  Score=140.63  Aligned_cols=208  Identities=13%  Similarity=0.063  Sum_probs=125.9

Q ss_pred             CHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhC----C-CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEE
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM----P-GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL  190 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~----~-~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~  190 (447)
                      .|.|.+|+++.++...  +..| +.....+|++.+++++    . ......+.+.+|+.+...++.+......++.|++.
T Consensus        46 ~~~V~~A~~~~~~~~~--~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p  123 (394)
T d2ay1a_          46 MRAVHAAEQRMLETET--TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVS  123 (394)
T ss_dssp             CHHHHHHHHHHHHHCC--CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CHHHHHHHHHHhhCCC--CCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEe
Confidence            4889999887776532  1123 2344556666666553    1 12234566777877777777665555677889999


Q ss_pred             cCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (447)
Q Consensus       191 ~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~  270 (447)
                      +++|-.+...+....             ...+..|......+..+    .+++++......+ +...+++.+.++++|.+
T Consensus       124 ~p~~~~y~~~~~~~g-------------~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~i~~~~~p~NPTG~~  185 (394)
T d2ay1a_         124 DPTWPNHVSIMNFMG-------------LPVQTYRYFDAETRGVD----FEGMKADLAAAKK-GDMVLLHGCCHNPTGAN  185 (394)
T ss_dssp             ESCCHHHHHHHHHHT-------------CCEEEEECEETTTTEEC----HHHHHHHHHTCCT-TCEEEEESSSCTTTCCC
T ss_pred             cccccchHHHHHHcC-------------CEEEEecccchhccccc----chhHHHHHhhccc-CcEEEEeCCCCCCCCCC
Confidence            998865554443332             22222222111111112    3445555444333 45566666667777876


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc-ccccc-cCCCCCE---EEeecccc-CCccccccccCHHHHHh
Q 013235          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF-WGFEA-HGVVPDI---VTMAKGIG-NGIPLGAVVTTPEIAEV  344 (447)
Q Consensus       271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~-~~~~~-~gv~pDi---vt~sK~lg-~G~pigav~~~~~i~~~  344 (447)
                      . +++.+++|.++|++|++++|.||+|.+|...+... ..... .....++   .+++|.++ .|+++|++++.....+.
T Consensus       186 ~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~  264 (394)
T d2ay1a_         186 L-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAAT  264 (394)
T ss_dssp             C-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHH
T ss_pred             C-CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHHH
Confidence            5 89999999999999999999999999997655211 10010 1111223   35789988 59999999987665544


Q ss_pred             h
Q 013235          345 L  345 (447)
Q Consensus       345 l  345 (447)
                      .
T Consensus       265 ~  265 (394)
T d2ay1a_         265 R  265 (394)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.51  E-value=1.4e-13  Score=137.07  Aligned_cols=209  Identities=12%  Similarity=0.042  Sum_probs=123.0

Q ss_pred             CHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC--------CCceEEEcCCHHHHHHHHHHHHHh-----hc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG--------NLKVVFFTNSGTEANELAIMMARL-----YT  182 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~--------~~~~v~~~~sGseA~e~Aik~ar~-----~t  182 (447)
                      .|.|.+|.......- ..+..| +.....+|++.+++++-.        +...+..+.+++.++..+......     ..
T Consensus        50 ~~~V~~a~~~~~~~~-~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  128 (412)
T d1ajsa_          50 LPVVRKVEQRIANNS-SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNN  128 (412)
T ss_dssp             CHHHHHHHHHHHTCT-TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             cHHHHHHHHHHHhCC-CcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCC
Confidence            467777654433321 111223 344566777777766411        122355677888888887765432     24


Q ss_pred             CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc
Q 013235          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (447)
Q Consensus       183 ~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep  262 (447)
                      +++.|++.+++|.++.......+...          +...+.++.  ..+..|    .+.+++.+....+ +..++++.+
T Consensus       129 pGd~Vlv~~P~y~~y~~~~~~~G~~~----------v~~~~~~~~--~~~~~d----~~~~~~~~~~~~~-~~~~il~~~  191 (412)
T d1ajsa_         129 KDTPVYVSSPTWENHNGVFTTAGFKD----------IRSYRYWDT--EKRGLD----LQGFLSDLENAPE-FSIFVLHAC  191 (412)
T ss_dssp             CCSCEEEEESCCTHHHHHHHHTTCSC----------EEEEECEET--TTTEEC----HHHHHHHHHHSCT-TCEEEEESS
T ss_pred             CCCEEEEeCCcchhhHHHHHHcCCeE----------EEeeccccc--cccccc----HHHHHHHHHhccC-CcEEEEecC
Confidence            67899999999976665544432211          111111111  112223    3444444443333 445566655


Q ss_pred             ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC--cccc-cccCCCC-CEE--Eeecccc-CCcccccc
Q 013235          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGF-EAHGVVP-DIV--TMAKGIG-NGIPLGAV  335 (447)
Q Consensus       263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~--~~~~-~~~gv~p-Div--t~sK~lg-~G~pigav  335 (447)
                      -++++|.+. +++.+++|.++|++||+++|.||+|.+|.+.+..  .+.. ......+ .++  ++||.++ .|+++|++
T Consensus       192 P~NPTG~v~-s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~  270 (412)
T d1ajsa_         192 AHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNL  270 (412)
T ss_dssp             SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEE
T ss_pred             CCCCcCCCC-CHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCcccc
Confidence            566777665 8999999999999999999999999998765521  1111 1111222 222  5789998 59999999


Q ss_pred             ccCHHHHHh
Q 013235          336 VTTPEIAEV  344 (447)
Q Consensus       336 ~~~~~i~~~  344 (447)
                      ++..+..+.
T Consensus       271 ~~~~~~~~~  279 (412)
T d1ajsa_         271 TVVAKEPDS  279 (412)
T ss_dssp             EEECSSHHH
T ss_pred             ccchhHHHH
Confidence            987654433

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2.4e-12  Score=127.78  Aligned_cols=299  Identities=12%  Similarity=0.050  Sum_probs=181.6

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---ccccc----ccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVL----YLNHAIADFAEALASKMPG-NLKVVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~----~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~  171 (447)
                      .|||..++      |-.++.|.+++.+.+....   +....    .....+.+.++++++.++. ..+.++|++++||++
T Consensus        24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~   97 (405)
T d1jf9a_          24 AYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI   97 (405)
T ss_dssp             EECCTTTC------CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEEeCccc------cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence            47775432      3357899999988776531   11111    1123456778899999874 346899999999999


Q ss_pred             HHHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          172 ELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       172 e~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ..+++...  ...+++.|++.+..||........+.....       ..+..++..  ..+.  .|    .+++++.+. 
T Consensus        98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g-------~~v~~~~~~--~~g~--~~----~~~~~~~i~-  161 (405)
T d1jf9a_          98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG-------AELRVIPLN--PDGT--LQ----LETLPTLFD-  161 (405)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT-------CEEEEECBC--TTSC--BC----GGGHHHHCC-
T ss_pred             HHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcC-------cEEEEECCC--CCCc--CC----HHHHHHhcc-
Confidence            98887532  334668899999998876654443321100       123333321  1111  12    334544432 


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                         ++++.|.++-+.+..|.+.|    +++|.++|+++|+++++|-+|+ .|..   .  ++.....+|+++++  |-+|
T Consensus       162 ---~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~---~--id~~~~~~D~~~~s~hK~~G  228 (405)
T d1jf9a_         162 ---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH---P--VDVQALDCDFYVFSGHKLYG  228 (405)
T ss_dssp             ---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---C--CCHHHHTCSEEEEEGGGTTS
T ss_pred             ---CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc---c--cchhhcCCceeecccccccc
Confidence               47899999999999999999    9999999999999999999996 3321   1  22223457999877  8753


Q ss_pred             CCccccccccCHHHHHhhcCCccc----------------------ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYF----------------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~----------------------~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~  385 (447)
                       +--+|++..++++.+.+......                      ..-.-|..+.++..++++.+++.+. +++.+...
T Consensus       229 -p~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~-~~i~~~~~  306 (405)
T d1jf9a_         229 -PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGL-NNIAEYEQ  306 (405)
T ss_dssp             -CSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred             -CCCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhCh-HHHHHHHH
Confidence             23378889999987755431100                      0112356666777778887765432 33344444


Q ss_pred             HHHHHHHHHHHhcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          386 YLKERLTALKDKYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       386 ~l~~~L~~l~~~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .|.+.+.+..+..+.+.  ....++.++.+.+...      .   ...+.+.|-++||.++
T Consensus       307 ~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~------~---~~~~~~~L~~~gI~v~  358 (405)
T d1jf9a_         307 NLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH------H---AYDVGSFLDNYGIAVR  358 (405)
T ss_dssp             HHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC------C---HHHHHHHHHHTTEECE
T ss_pred             HHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC------C---HHHHHHHHHHCCcEEE
Confidence            44444444444444332  1223344556665211      1   3456777888999875

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.42  E-value=8.5e-13  Score=133.08  Aligned_cols=273  Identities=14%  Similarity=0.088  Sum_probs=153.0

Q ss_pred             CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (447)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik  176 (447)
                      ...+||+.+-.++.    .   ..+++..++....   ..| -++...+|++++++++  +.+.++|++||+.||..+++
T Consensus        41 ~~v~iDl~sDs~t~----a---m~~~~~aa~~~GD---d~Y~~dpt~~~lE~~~a~l~--G~e~al~~~SGt~An~~a~~  108 (456)
T d1c7ga_          41 KDIYIDLLTDSGTN----A---MSDKQWAGMMIGD---EAYAGSENFYHLEKTVKELF--GFKHIVPTHQGRGAENLLSQ  108 (456)
T ss_dssp             GGCSEECSCSSSCC----C---EEHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHH--CCSEEEEESSHHHHHHHHHH
T ss_pred             cceeeEcccCCCcc----c---chHHHHHHHhccc---hhccCCchHHHHHHHHHHHh--CCCeEEECCCHHHHHHHHHH
Confidence            34688988755532    1   1222322332221   223 3788899999999999  56789999999999999998


Q ss_pred             HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (447)
Q Consensus       177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (447)
                      ..   .++.+.|.....|+..........+...   ............++++++  ..|    .++|++.|....++.++
T Consensus       109 ~l---~~~Gd~Vi~~~~f~~~~~~i~~~g~~~~---~~~~~~~~~~~~~~~~~~--~~d----~~~le~~I~~~~~~~~~  176 (456)
T d1c7ga_         109 LA---IKPGQYVAGNMYFTTTRFHQEKNGATFV---DIVRDEAHDASLNLPFKG--DID----LNKLATLIKEKGAENIA  176 (456)
T ss_dssp             HH---CCTTEEEEESSCCHHHHHHHHHTTEEEE---ECBCGGGGCTTCCCSCTT--CBC----HHHHHHHHHHHCGGGEE
T ss_pred             Hh---cCCCCeEecCcchHHHHHHHHHcCceee---eccccccccccccCCccc--cCC----HHHHHHHhhhcCCccce
Confidence            54   3445555444334332211111111000   000000000001111211  124    67888888876667889


Q ss_pred             EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc-----cCCCcccccc------cCCCCCEEEeecc
Q 013235          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR-----TGSHFWGFEA------HGVVPDIVTMAKG  325 (447)
Q Consensus       257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr-----~G~~~~~~~~------~gv~pDivt~sK~  325 (447)
                      .+++|..++.+|-.+.+.+.+++|+++|++||+.+++|+++..-..     ....+.....      ..-.-|+++++-.
T Consensus       177 ~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~  256 (456)
T d1c7ga_         177 YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGK  256 (456)
T ss_dssp             EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETT
T ss_pred             eEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEecc
Confidence            9999987777776777899999999999999999999999852100     0000000000      0113588876633


Q ss_pred             ccCCcccc-ccccC-HHHHHhhcCC----cccccCCCChHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013235          326 IGNGIPLG-AVVTT-PEIAEVLTRR----NYFNTFGGNPVCT-AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       326 lg~G~pig-av~~~-~~i~~~l~~~----~~~~T~~~np~a~-aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  394 (447)
                      -+.|.+.| +++++ +++++.+...    ....++++..... .+....|....+++..++..+..++|.++|.+.
T Consensus       257 K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         257 KDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             TTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            33333444 44444 5565544321    1234555543333 333333555555566666677778898888876

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.40  E-value=1.3e-10  Score=115.08  Aligned_cols=297  Identities=14%  Similarity=0.057  Sum_probs=179.4

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---cccccc----cchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLY----LNHAIADFAEALASKMPGN-LKVVFFTNSGTEAN  171 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~~----~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~  171 (447)
                      .|||-.+.      |-.++.|.+++.+.+....   |.....    ....+.+.+++++++++.+ .+.++|++++++++
T Consensus        24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~   97 (408)
T d1t3ia_          24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI   97 (408)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence            47885432      3357899999988877642   111111    1245567788899999765 47799999999999


Q ss_pred             HHHHHHHH--hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235          172 ELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (447)
Q Consensus       172 e~Aik~ar--~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (447)
                      ..++....  ....++.|++.+..|++............       ...+..++.+...  .  .+    .+.+++.+  
T Consensus        98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~-------g~~v~~~~~~~~~--~--~~----~~~l~~~~--  160 (408)
T d1t3ia_          98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-------GAVLKFVQLDEQE--S--FD----LEHFKTLL--  160 (408)
T ss_dssp             HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-------CCEEEEECBCTTS--S--BC----HHHHHHHC--
T ss_pred             HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc-------CceEeeeeccccc--c--cc----HHHhhhcc--
Confidence            88876532  23456778887777776554332211100       0112333322211  1  12    45555554  


Q ss_pred             cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc
Q 013235          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                        .++++.|.+..+++..|.+.|    +++|.++|+++|+++|+|=+|+ +|..     -++.....+|+++++  |- .
T Consensus       161 --~~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~-----~id~~~~~~D~~~~s~hK~-~  227 (408)
T d1t3ia_         161 --SEKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY-----PLDVQLIDCDWLVASGHKM-C  227 (408)
T ss_dssp             --CTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS-----CCCHHHHTCSEEEEEGGGT-T
T ss_pred             --CCCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-cccc-----cccccccCCceEEeccccc-c
Confidence              247889999999999999998    9999999999999999999995 4422     123223356999887  75 3


Q ss_pred             CCccccccccCHHHHHhhcCCccc---------------------ccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHH
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYF---------------------NTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVV  383 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~---------------------~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~  383 (447)
                      |+-.+|++..+++..........+                     -+-..|..+.++..++|+.+.+-   ++.++...+
T Consensus       228 gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l  307 (408)
T d1t3ia_         228 APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL  307 (408)
T ss_dssp             SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            444578899999987765431100                     01122555566666778877653   344555555


Q ss_pred             HHHHHHHHHHHHHhcCCeeeE------eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          384 GSYLKERLTALKDKYGIIGDV------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       384 g~~l~~~L~~l~~~~~~i~~v------rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      .+++.+.+.+    .+.+..+      ...+.++.+.+..-         ....+.+.|.++||.++.
T Consensus       308 ~~~l~~~~~~----~~~~~~~~~~~~~~~~~~iv~f~~~~~---------~~~~v~~~L~~~gI~v~~  362 (408)
T d1t3ia_         308 THYLWQGLGQ----IPQLRLYGPNPKHGDRAALASFNVAGL---------HASDVATMVDQDGIAIRS  362 (408)
T ss_dssp             HHHHHHHHHT----CTTEEEESCCGGGSCBCSEEEEEETTB---------CHHHHHHHHHTTTEECBC
T ss_pred             HhHHhhhhcc----CccccccCCCccccCcceEEEEEeCCC---------CHHHHHHHHhhCCcEEec
Confidence            5555554443    3322111      11233445554211         134677788889998764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=3.2e-12  Score=125.98  Aligned_cols=210  Identities=15%  Similarity=0.137  Sum_probs=136.2

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-cccc---cc-----cchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV---LY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~---~~-----~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      .|+|..++      |..+|.|.+|+.+.+.... +.+.   .+     ......++++++++.++.+.++|.|++|+|++
T Consensus         4 iYlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~   77 (391)
T d1p3wa_           4 IYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES   77 (391)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred             EEeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHH
Confidence            37776532      4578999999988765321 1111   11     13445677889999998888899999999999


Q ss_pred             HHHHHHHHHh--hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235          171 NELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (447)
Q Consensus       171 ~e~Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (447)
                      +..++.....  ...++.||+.+..|++.......+...        ...+..++...  .+  ..|    ++++++.+.
T Consensus        78 l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~--------G~~v~~v~~~~--~~--~~d----~~~~~~~i~  141 (391)
T d1p3wa_          78 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE--------GFEVTYLAPQR--NG--IID----LKELEAAMR  141 (391)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHT--------TCEEEEECCCT--TS--CCC----HHHHHHHCC
T ss_pred             HHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHc--------CCEEEEeCCCC--CC--eEc----HHHHHHhCC
Confidence            9988876542  345688888888886644322211100        01223333211  11  123    456666653


Q ss_pred             ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccc
Q 013235          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGI  326 (447)
Q Consensus       249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~l  326 (447)
                          +++++|+++.+++.+|.+.+    +++|.++|++||+++|+|.+|+ +|..     .++.....+|+++++  |.+
T Consensus       142 ----~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~-----~~d~~~~~~D~~~~s~~k~~  207 (391)
T d1p3wa_         142 ----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL-----PIDLSQLKVDLMSFSGHKIY  207 (391)
T ss_dssp             ----TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB-----CCCTTTSCCSEEEEESTTTT
T ss_pred             ----CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc-----cccchhcccccccccccccc
Confidence                37889999999999999988    9999999999999999999995 4321     123333457888655  554


Q ss_pred             cCCccccccccCHHHHHhhc
Q 013235          327 GNGIPLGAVVTTPEIAEVLT  346 (447)
Q Consensus       327 g~G~pigav~~~~~i~~~l~  346 (447)
                      | +.-+|++..+++......
T Consensus       208 g-~~g~g~~~~~~~~~~~~~  226 (391)
T d1p3wa_         208 G-PKGIGALYVRRKPRVRIE  226 (391)
T ss_dssp             S-CSSCEEEEECBTTBCCCC
T ss_pred             C-CCceEEEEEecchhcccC
Confidence            3 234577778776554443

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.38  E-value=2.8e-11  Score=120.82  Aligned_cols=264  Identities=16%  Similarity=0.017  Sum_probs=151.6

Q ss_pred             HHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeec-C
Q 013235          146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHAL-N  224 (447)
Q Consensus       146 lae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~-~  224 (447)
                      +...+.+.++.+........++++++++++...|...+++.||+- ..-|.....++...+..          ...+. .
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s-~~~H~s~~k~~~~~g~~----------~~~v~~~  186 (434)
T d2z67a1         118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYP-YASHKSPIKAVSFVGMN----------MRLVETV  186 (434)
T ss_dssp             HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHTTCE----------EEEECCE
T ss_pred             HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEe-ccCCHHHHHHHHHhCCc----------ceEEEee
Confidence            444556666554444445566666777777766666566666654 55576665555444321          11111 0


Q ss_pred             CCCcCCCCCCChHHHHHHHHHHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc-
Q 013235          225 PDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR-  302 (447)
Q Consensus       225 p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr-  302 (447)
                      ++.  ..+..|    +++|++.+++. ..+.+++|++......+|.+.+    +++|.++|++||+++|+|+++.++.. 
T Consensus       187 ~~~--~~~~~d----~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~  256 (434)
T d2z67a1         187 LDG--DRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNY  256 (434)
T ss_dssp             EET--TEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred             cCC--CccCCC----HHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhh
Confidence            111  111234    67777777642 2346778888877777787766    99999999999999999999964321 


Q ss_pred             cCCCcccccccCCCCCEEEee--ccccCCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHH
Q 013235          303 TGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN  379 (447)
Q Consensus       303 ~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~  379 (447)
                      .+ +.. ........|+++++  |.++++...|++.. ++++.+.+.......+...+...+.+++..+....-.++.++
T Consensus       257 ~~-~~~-~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~  334 (434)
T d2z67a1         257 YL-EKL-KKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKN  334 (434)
T ss_dssp             HH-HHH-HHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-ccc-cccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHH
Confidence            11 110 01123456999877  98876555555554 466666665443333333333333344333332223456777


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC-eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          380 AHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       380 ~~~~g~~l~~~L~~l~~~~~~-i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ..++.++++++|+++...++. +.+.+. .....+.+..       +   ..++...|.++||..
T Consensus       335 ~~~~a~~l~~~L~~l~~~~g~~ll~~~~-~~~~~~~~~~-------~---~~~l~~~L~~~gI~g  388 (434)
T d2z67a1         335 QKNSKKLLDELLNDLSKKTGGKFLDVES-PIASCISVNS-------D---PVEIAAKLYNLRVTG  388 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCBCCCCC-SSEEEEECSS-------C---HHHHHHHHHHTTEES
T ss_pred             HHHHHHHHHHHHHHhhhhcCceecCCCC-CceeeeecCC-------C---HHHHHHHHHHcCCee
Confidence            888899999999998766532 222111 1111222211       1   356788899999854

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-11  Score=120.94  Aligned_cols=285  Identities=13%  Similarity=0.066  Sum_probs=163.6

Q ss_pred             CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yH  195 (447)
                      +|+|.+|+..+  ...|-+.. ....+.+..+.|++.++.+. ..|+|+.|||+|+++++....  .+++++++...+++
T Consensus        31 ~~~Vl~am~~~--~i~HRs~~-f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--~~~~~~~~~~~~~~  105 (388)
T d1h0ca_          31 PPRIMAAGGLQ--MIGSMSKD-MYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--EPGDSFLVGANGIW  105 (388)
T ss_dssp             CHHHHHHHTCC--CCCTTSHH-HHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--CSSCCEEECBSSHH
T ss_pred             CHHHHHHhCcC--CCCCCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh--ccCCceeeecccce
Confidence            67887766421  23343222 24566788888988886543 368899999999999998653  36677888777776


Q ss_pred             cCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCC
Q 013235          196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG  275 (447)
Q Consensus       196 G~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~  275 (447)
                      +...........         ..+..+..+..    -..|    .+++++.+...   ++..+.+.-+.+.+|.+.+   
T Consensus       106 ~~~~~~~~~~~~---------~~~~~~~~~~~----~~~~----~~~~~~~~~~~---~~~~v~~~~~~n~tG~i~p---  162 (388)
T d1h0ca_         106 GQRAVDIGERIG---------ARVHPMTKDPG----GHYT----LQEVEEGLAQH---KPVLLFLTHGESSTGVLQP---  162 (388)
T ss_dssp             HHHHHHHHHHHC-----------CBCCBCCTT----CCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC---
T ss_pred             eeeecccccccc---------ccccccccCCc----cccc----hHHHHHHhccC---CcceEEEeeeeeccccccC---
Confidence            654332221100         01111111110    0112    23444333322   3456666777788899988   


Q ss_pred             hHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc----
Q 013235          276 YLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN----  349 (447)
Q Consensus       276 ~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~----  349 (447)
                       +++|.++|++||+++++|.+|+ +|..   .  ++......|+++++  |.+++---+|.+..+++..+.+....    
T Consensus       163 -i~~i~~~~~~~g~~~~vD~~qs-~g~~---~--~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~  235 (388)
T d1h0ca_         163 -LDGFGELCHRYKCLLLVDSVAS-LGGT---P--LYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPF  235 (388)
T ss_dssp             -CTTHHHHHHTTTCEEEEECTTT-TTTS---C--CCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCS
T ss_pred             -HHHHHHHhhcccccceeccccc-cccc---c--ccccccccceecccccccccCCCceEEEeecHHHHHhhhhcccccc
Confidence             8999999999999999999996 4321   1  23233445888876  77764334566778887766553210    


Q ss_pred             -------------------ccccCCCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHhcCCeee--Ee
Q 013235          350 -------------------YFNTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGD--VR  405 (447)
Q Consensus       350 -------------------~~~T~~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vr  405 (447)
                                         .......+..+..+..++++.+.+.+   ..++..++.+++++.+.++-.. ..+.+  .|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~-~~~~~~~~r  314 (388)
T d1h0ca_         236 SFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ-LFVKDPALR  314 (388)
T ss_dssp             CSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-BSSCSGGGB
T ss_pred             ccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcc-cccCCHHHc
Confidence                               00111233445666677787776543   4455666677777777665211 11111  12


Q ss_pred             ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                      .. .++.+.+.+        .....++.+.|+++ ||.+..+
T Consensus       315 s~-~i~~~~~p~--------~~~~~~~~~~L~~~~gI~v~~G  347 (388)
T d1h0ca_         315 LP-TVTTVAVPA--------GYDWRDIVSYVIDHFDIEIMGG  347 (388)
T ss_dssp             CT-TEEEEECCT--------TCCHHHHHHHHHHHHCEECEEC
T ss_pred             CC-eEEEEECCC--------CCCHHHHHHHHHhcCCEEEeCC
Confidence            22 234444421        11245677888765 8887643

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.34  E-value=5.1e-11  Score=115.46  Aligned_cols=268  Identities=13%  Similarity=0.045  Sum_probs=154.1

Q ss_pred             chHHHHHHHHHHHhCCCCCc--eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235          140 NHAIADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (447)
Q Consensus       140 ~~~~~elae~L~~~~~~~~~--~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~  217 (447)
                      .....+..++|+++++.+.+  .++|++|||++++.++.-..  ..++++++....+++..........         ..
T Consensus        32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  100 (361)
T d1m32a_          32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--GPQDKVLIVSNGAYGARMVEMAGLM---------GI  100 (361)
T ss_dssp             TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--CTTCCEEEEESSHHHHHHHHHHHHH---------TC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh--hhccccceeeehhhhhhHHHHhhhh---------hc
Confidence            45567888888888875443  47888999999999986432  2445555555555443332221110         01


Q ss_pred             CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (447)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~  297 (447)
                      .......+...  .  .+.+  ........    ..++..+.+-.+.+.+|.+.+    +++|.++|++||+++++|-+|
T Consensus       101 ~~~~~~~~~~~--~--~~~~--~~~~~~~~----~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~q  166 (361)
T d1m32a_         101 AHHAYDCGEVA--R--PDVQ--AIDAILNA----DPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMS  166 (361)
T ss_dssp             CEEEEECCTTS--C--CCHH--HHHHHHHH----CTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTT
T ss_pred             ccccccccccC--C--ccch--hhHHHHHh----ccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeeccc
Confidence            12222111110  0  0100  11111111    236677777788888999988    999999999999999999999


Q ss_pred             cCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc------------------ccccCCCC
Q 013235          298 AGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN------------------YFNTFGGN  357 (447)
Q Consensus       298 tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~------------------~~~T~~~n  357 (447)
                      + +|..   .  ++......|+++++  |.+++..-+|++..+++..+......                  ....+..+
T Consensus       167 s-~G~~---~--~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  240 (361)
T d1m32a_         167 S-FGGI---P--MDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP  240 (361)
T ss_dssp             T-TTTS---C--CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred             c-cCcc---c--ccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCC
Confidence            7 4321   1  23333456999888  88865334678888888776554321                  11233445


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe--e--eEeecceeEEEEEeeCCCCCCCCHHHHHHHH
Q 013235          358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII--G--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIM  433 (447)
Q Consensus       358 p~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i--~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~  433 (447)
                      ...+.+...+|+.+.++...+...+..+...+.|.+..+..+..  .  ..|+.+ ++.+.+..+..      ....++.
T Consensus       241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~-v~~~~~p~~~~------~~~~~~~  313 (361)
T d1m32a_         241 THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI-ITAFYSPEDPQ------YRFSEFY  313 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSS-EEEEECCCCTT------CCHHHHH
T ss_pred             chhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCc-EEEEECCCCCC------CCHHHHH
Confidence            56666667777776666554444444444444444444444322  1  123333 33454422211      1145688


Q ss_pred             HHHHhCCceeec
Q 013235          434 DKMKGICALFFS  445 (447)
Q Consensus       434 ~~l~~~Gvlv~~  445 (447)
                      +.|.++||++..
T Consensus       314 ~~l~~~gi~i~~  325 (361)
T d1m32a_         314 RRLKEQGFVIYP  325 (361)
T ss_dssp             HHHHHTTEECEE
T ss_pred             HHHHHCCcEEEC
Confidence            999999998753

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=1.9e-10  Score=112.37  Aligned_cols=262  Identities=11%  Similarity=0.107  Sum_probs=151.8

Q ss_pred             HHHHHHHHHhC----CCCCceEEEcCCHHHHHHHHHHHH-HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235          144 ADFAEALASKM----PGNLKVVFFTNSGTEANELAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (447)
Q Consensus       144 ~elae~L~~~~----~~~~~~v~~~~sGseA~e~Aik~a-r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g  218 (447)
                      .+..+.+.+.+    +.+.+.++|+.|||++++++++-. ....+++++++...+.++...........         ..
T Consensus        39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~---------~~  109 (382)
T d2bkwa1          39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYG---------AQ  109 (382)
T ss_dssp             HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTT---------CE
T ss_pred             HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccc---------cc
Confidence            34444444444    345678999999999999999754 33345678888888887755433221110         01


Q ss_pred             eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC--CEEEEecc
Q 013235          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLCIADEV  296 (447)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g--~llI~DEv  296 (447)
                      +..+. +.+....  .+    .+.+++.+...   ++..+++-.+..++|...+    ++.+.++|++++  +++++|-+
T Consensus       110 ~~~~~-~~~~~~~--~~----~~~~~~~~~~~---~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~  175 (382)
T d2bkwa1         110 VDVVR-PLKIGES--VP----LELITEKLSQN---SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAV  175 (382)
T ss_dssp             EEEEC-CSSTTSC--CC----HHHHHHHHHHS---CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECT
T ss_pred             ccccc-ccCCCCc--cc----hhHHHHHhhhc---cchheeeeecccccccccc----chhhhhhccccccceeeeeecc
Confidence            11111 1111111  12    34555555432   4456677777788888887    899999998875  99999999


Q ss_pred             ccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc-------------------------
Q 013235          297 QAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-------------------------  349 (447)
Q Consensus       297 ~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~-------------------------  349 (447)
                      |+ +|-   ...-++.+|  .|++++|  |.+++.--+|+++.+++..+.+....                         
T Consensus       176 qs-~g~---~pid~~~~g--iD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (382)
T d2bkwa1         176 CS-IGC---EEFEFDEWG--VDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAG  249 (382)
T ss_dssp             TT-TTT---SCCCTTTTT--CSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred             cc-ccc---ccccccccC--eeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccccc
Confidence            97 432   122223333  5999887  98865444688999998876553210                         


Q ss_pred             ccccCC-CChHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHhcCC---eeeEeecceeEEEEEeeCCCCC
Q 013235          350 YFNTFG-GNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGI---IGDVRGRGFLLGVEFVTDRQLK  422 (447)
Q Consensus       350 ~~~T~~-~np~a~aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~---i~~vrg~Gl~~giel~~~~~~~  422 (447)
                      ...|.+ -|....++..++|+.+.+++..   ++.+++.+++++++.+.......   ....+..+ +..+.+       
T Consensus       250 ~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~-v~~~~~-------  321 (382)
T d2bkwa1         250 KGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHG-LTAVYV-------  321 (382)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSS-CEEEEC-------
T ss_pred             ccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCc-EEEEcC-------
Confidence            012222 3344556666789988776543   44445566666665442211100   01112222 233443       


Q ss_pred             CCCHHHHHHHHHHHHhCCceeecc
Q 013235          423 TPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       423 ~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                       |++   ..+.+.|.++||.+..+
T Consensus       322 -~~~---~~~~~~L~~~gi~i~~G  341 (382)
T d2bkwa1         322 -ADP---PDVIAFLKSHGVVIAGG  341 (382)
T ss_dssp             -SCH---HHHHHHHHHTTEECBCC
T ss_pred             -CCH---HHHHHHHHHCCeEEECC
Confidence             222   35777888999988754

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=9.4e-11  Score=117.18  Aligned_cols=270  Identities=9%  Similarity=-0.068  Sum_probs=156.3

Q ss_pred             HHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHH-HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEee
Q 013235          145 DFAEALASKMPGN-LKVVFFTNSGTEANELAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA  222 (447)
Q Consensus       145 elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~a-r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~  222 (447)
                      ++.+.++++++.+ ....+++++|+++...++.++ |....+.+.|+....-|.....++...+..          ...+
T Consensus        98 ~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~----------~~~v  167 (445)
T d3bc8a1          98 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFE----------PVVI  167 (445)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCE----------EEEE
T ss_pred             HHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCe----------eEEE
Confidence            4555666655432 245678888887766665554 433344444555566687777776655421          1111


Q ss_pred             c-CCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc
Q 013235          223 L-NPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA  301 (447)
Q Consensus       223 ~-~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg  301 (447)
                      . .++.  ..+..|    +++|++.+++...+++++|++.......|.+.+    +++|.++|++||++||+|+++.++-
T Consensus       168 ~~~~~~--~~~~id----~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~  237 (445)
T d3bc8a1         168 ENVLEG--DELRTD----LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS  237 (445)
T ss_dssp             CCEEET--TEEECC----HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred             EeeccC--cccccC----HHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhh
Confidence            1 1111  111234    677888777654557888888887777888776    9999999999999999999996431


Q ss_pred             c-cCC-CcccccccCCCCCEEEee--ccccCCccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---
Q 013235          302 R-TGS-HFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---  373 (447)
Q Consensus       302 r-~G~-~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---  373 (447)
                      . ... ..++....  ..|+++++  |.++++...|+++.+ +++.+.+.....   +.++......+.+.+..+..   
T Consensus       238 ~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~  312 (445)
T d3bc8a1         238 SKCMHLIQQGARVG--RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP---GRASASPSLDVLITLLSLGCSGY  312 (445)
T ss_dssp             HHHHHHHHHHHHHS--CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSC---SCBCSHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchhccCcC--CcceEEecCccccccCCCCceeeeCChHHHHHHHHHHh---hcccCcchHHHHHHHHHHhhhcc
Confidence            1 000 01111111  35888766  877765555666554 555554432111   12222222333444444433   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCC-eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235          374 DKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL  442 (447)
Q Consensus       374 ~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl  442 (447)
                      ....++..++.+++++.|.++...++. +...+.......+.+....... .  ....++...|.+.||-
T Consensus       313 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~--~~~~~l~~~L~~~gI~  379 (445)
T d3bc8a1         313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHH-D--KAVTQLGSMLFTRQVS  379 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSS-S--CHHHHHHHHHHHTTCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccC-C--CCHHHHHHHHHHcCCC
Confidence            345566777788999999998877653 3455566666666553322111 1  1245677788888873

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.23  E-value=2.9e-10  Score=110.73  Aligned_cols=232  Identities=15%  Similarity=0.147  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      ++-.+++.+.++...++.    .+...+|+++|+++++  .+.+++++|||.|+.+|++... ...+++||+...+|+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~----G~~v~~~E~~la~~~g--~~~ai~~~sgt~Al~~al~al~-~~~gdeVi~~~~~~~~~   84 (376)
T d1mdoa_          12 AEELAAVKTVLDSGWITT----GPKNQELEAAFCRLTG--NQYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVST   84 (376)
T ss_dssp             HHHHHHHHHHHHHTCCSS----SHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHH
T ss_pred             HHHHHHHHHHHhcCCCcC----CHHHHHHHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHhC-CCCCCEEEEeccccccc
Confidence            555678888887754432    3566889999999994  4788999999999999998542 34567888888887765


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      ..........+.          ..-..|+    .+..|    .++|++.+.   + ++.+||+-.+   .|...+    +
T Consensus        85 ~~ai~~~g~~pv----------~~d~~~~----~~~~d----~~~l~~~i~---~-~tkaIi~~h~---~G~~~~----~  135 (376)
T d1mdoa_          85 LNMIVLLGANPV----------MVDVDRD----TLMVT----PEHIEAAIT---P-QTKAIIPVHY---AGAPAD----L  135 (376)
T ss_dssp             HHHHHHTTCEEE----------EECBCTT----TCCBC----HHHHHHHCC---T-TEEEECCBCG---GGCCCC----H
T ss_pred             ccchhcccccee----------eeccccc----ccCCC----HHHHHHhcC---C-CCeEEEEeCC---CCCccc----h
Confidence            554443322110          0001111    12223    577777764   2 5677776543   454444    8


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcC---Cc
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTR---RN  349 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~---~~  349 (447)
                      ++|.++|+++|++||.|.+|+ +|-.   +-+ ...|-. |..++|    |.++.|- -|+++++ +++.+.+..   ..
T Consensus       136 ~~i~~i~~~~~i~vIeD~a~a-~g~~---~~~-~~~g~~-g~~~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g  208 (376)
T d1mdoa_         136 DAIYALGERYGIPVIEDAAHA-TGTS---YKG-RHIGAR-GTAIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHG  208 (376)
T ss_dssp             HHHHHHHHHHTCCBCEECTTC-TTCE---ETT-EETTSS-SEEEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTT
T ss_pred             hHHHHHHHhcCceEEeccchh-ccCe---eCC-eecccc-cCccccCCCcCCCCCCC-CCEEEEechhHHHHHHhhcccC
Confidence            999999999999999999996 5421   101 111221 334443    8887432 2556654 455444321   10


Q ss_pred             ---------------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013235          350 ---------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (447)
Q Consensus       350 ---------------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  394 (447)
                                           ....+..+.+.++.++..|+.++  ++.++-++..+++.+.|.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~--~~~~~r~~~~~~~~~~L~~~  272 (376)
T d1mdoa_         209 LGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADL  272 (376)
T ss_dssp             EECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTS
T ss_pred             Ccccccccccccccccccchhcccccccchhhhhhhhhhhhhhh--HHHHHHhhhhhhhhhhcccc
Confidence                                 01233456788888888887653  46667777777887777765

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.19  E-value=4e-11  Score=119.33  Aligned_cols=216  Identities=13%  Similarity=0.069  Sum_probs=125.9

Q ss_pred             cccCCCCCHHHHHHHHH-HHHh------cccccccccc----hHHHHHHHHHHHhC---C---CCCceEEEcCCHHHHHH
Q 013235          110 TVCCGHCHPYVVDSIVN-QIKR------IQHSTVLYLN----HAIADFAEALASKM---P---GNLKVVFFTNSGTEANE  172 (447)
Q Consensus       110 ~~~lGh~~p~v~~A~~~-~l~~------~~~~~~~~~~----~~~~elae~L~~~~---~---~~~~~v~~~~sGseA~e  172 (447)
                      ++.++|++|.+.+.-.. +.+.      .+|.+..+.+    ....||.+.++++.   +   .+.++|+++|+.+|++.
T Consensus        58 ~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~  137 (425)
T d2hoxa1          58 SADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIH  137 (425)
T ss_dssp             CEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHH
T ss_pred             eeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHH
Confidence            34567788877766322 2111      2232221111    12246666666653   2   23457999999999999


Q ss_pred             HHHHHHHh------hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          173 LAIMMARL------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       173 ~Aik~ar~------~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      +++.....      ..+.++||+..+.|-.+...+..+.. ..++                    |..|    .+.+++.
T Consensus       138 ~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~-~~~~--------------------~~~D----~~~~~~~  192 (425)
T d2hoxa1         138 GLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK-KGYV--------------------WAGN----AANYVNV  192 (425)
T ss_dssp             HHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB-TTEE--------------------EEEE----GGGGTTC
T ss_pred             HHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCC-CCCc--------------------cCCC----HHHHHhh
Confidence            99985532      23457899999999665443322211 1111                    1112    1222222


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eeec
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAK  324 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK  324 (447)
                      +   .++....+++.|.++.| .+..           +..+++.+|.||+|-+...+.     +.. --..+|+  +|||
T Consensus       193 ~---~~~~~ii~l~sPnNPtG-~l~~-----------~v~~~~~~I~DEaY~~~~f~~-----~~~-~~~~~Ivl~S~SK  251 (425)
T d2hoxa1         193 S---NPEQYIEMVTSPNNPEG-LLRH-----------AVIKGCKSIYDMVYYWPHYTP-----IKY-KADEDILLFTMSK  251 (425)
T ss_dssp             S---CGGGEEEEEESSCTTTC-CCCC-----------CSSTTCEEEEECTTCSTTTSC-----CCS-CBCCSEEEEEHHH
T ss_pred             C---CCCceEEEEECCCCCCc-chhh-----------hhhhCCEEEEeccccCccccc-----hhh-hcCCeEEEEeCHH
Confidence            1   23344567777765554 4321           233689999999995432211     110 1123555  6899


Q ss_pred             ccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235          325 GIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (447)
Q Consensus       325 ~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i  371 (447)
                      .+| .|+|+||+++ ++++++.+......++++.+.+++.+++++|+..
T Consensus       252 ~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~  300 (425)
T d2hoxa1         252 FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEV  300 (425)
T ss_dssp             HTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred             hccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhcc
Confidence            999 7999999655 5677777765555678888889999998888753

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1.9e-09  Score=104.29  Aligned_cols=281  Identities=19%  Similarity=0.160  Sum_probs=157.8

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yH  195 (447)
                      -+|+|.+|+.++.  +.|.+.. ......+..+.|.+.+..+.+.++|+.|||+|+|+++.-..  .++++++++..++.
T Consensus        11 v~~~V~~am~~~~--~~hr~~~-f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~--~~g~~vlv~~~G~f   85 (348)
T d1iuga_          11 LHPKALEALARPQ--LHHRTEA-AREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGKF   85 (348)
T ss_dssp             CCHHHHHHHHSCC--CCTTSHH-HHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSHH
T ss_pred             CCHHHHHHhcCCC--CCCCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc--cccccceeecchHH
Confidence            3688888875432  3332221 23456677788888877666789999999999999997543  25677888877766


Q ss_pred             cCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCC
Q 013235          196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG  275 (447)
Q Consensus       196 G~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~  275 (447)
                      |.......-...         ..+.....+..  ...  +       +++ +..   .++..+++--...++|.+.+   
T Consensus        86 ~~~~~~~a~~~~---------~~~~~~~~~~g--~~~--~-------~~~-~~~---~~~~~v~~~h~eTstG~~~~---  138 (348)
T d1iuga_          86 SERFYEIALEAG---------LVVERLDYPYG--DTP--R-------PED-VAK---EGYAGLLLVHSETSTGALAD---  138 (348)
T ss_dssp             HHHHHHHHHHTT---------CEEEEEECCTT--CCC--C-------TTT-SCC---SSCSEEEEESEETTTTEECC---
T ss_pred             HHHHHHHHHhcC---------cccccccccCC--Ccc--c-------ccc-ccc---cCCCeeEEEecchhhhhhcc---
Confidence            544332221100         01222222111  000  0       000 111   13334444444455678887   


Q ss_pred             hHHHHHHHHHHhC--CEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCcc-
Q 013235          276 YLPAVYKSIKKAG--GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY-  350 (447)
Q Consensus       276 ~l~~l~~l~~~~g--~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~~-  350 (447)
                       +++|.++|++|+  +++++|-+++ +|-.   ..-++.++  .|++++|  |++++=--+|.++.+++.++.+.+..+ 
T Consensus       139 -i~~i~~~~~~~~~~~l~~vDavss-~g~~---~i~~d~~~--iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~  211 (348)
T d1iuga_         139 -LPALARAFKEKNPEGLVGADMVTS-LLVG---EVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYY  211 (348)
T ss_dssp             -HHHHHHHHHHHCTTCEEEEECTTT-BTTB---CCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSST
T ss_pred             -HHHHHHHHHhhhccceeechhhhc-cccc---cccccccc--CCEEEeccccceecCCceeeeeechHHHhhhcccccc
Confidence             999999999985  7899999986 4321   22334444  4998876  999642224888999998887654311 


Q ss_pred             ------------cccCCCChH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe--eeEeecceeEEEEE
Q 013235          351 ------------FNTFGGNPV-CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII--GDVRGRGFLLGVEF  415 (447)
Q Consensus       351 ------------~~T~~~np~-a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i--~~vrg~Gl~~giel  415 (447)
                                  ..|....|+ .+.+..++|+.+.++ ..++. +..+.....++.+.+..++-  .+-+..+ +..+.+
T Consensus       212 ~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~s~~-v~~~~~  288 (348)
T d1iuga_         212 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYGVGEEGGLRPVPKRFSPA-VAAFYL  288 (348)
T ss_dssp             TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHHHHHHTTCEESCSSBCTT-CEEEEC
T ss_pred             cchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhhhhhhhccChhhcCCe-EEEEEC
Confidence                        123334444 444555788877654 33333 23333334444444333221  1112212 344444


Q ss_pred             eeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          416 VTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       416 ~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                              |+.....++.+.|.++|+.+..+
T Consensus       289 --------P~g~~~~~~~~~l~~~gi~i~~G  311 (348)
T d1iuga_         289 --------PEGVPYARVKEAFAQRGAVIAGG  311 (348)
T ss_dssp             --------CTTCCHHHHHHHHHTTTEECEEC
T ss_pred             --------CCCCCHHHHHHHHHHCCeEEEcC
Confidence                    22222457888999999998754

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=1.1e-09  Score=106.81  Aligned_cols=206  Identities=17%  Similarity=0.155  Sum_probs=129.2

Q ss_pred             CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-ccccc-----cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHH
Q 013235           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEANE  172 (447)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~~-----~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e  172 (447)
                      |-|||..+      .+..++.|.+|+.+.++.... ....+     ....+.+.+++++++++.+.++|+|++++||++.
T Consensus         2 ~iyld~a~------~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~   75 (376)
T d1eg5a_           2 RVYFDNNA------TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN   75 (376)
T ss_dssp             CEECBTTT------CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred             EEEEECcc------cccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence            46888643      245679999999888875421 11111     1233456678899999888889999999999999


Q ss_pred             HHHHHH-HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235          173 LAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (447)
Q Consensus       173 ~Aik~a-r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (447)
                      .++... .....++++++....+|+........-.         ..|+.....|....  ...|    ++++++.+.   
T Consensus        76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---------~~g~~v~~vp~~~~--~~id----~~~l~~~i~---  137 (376)
T d1eg5a_          76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLS---------MKGFKVKYVPVDSR--GVVK----LEELEKLVD---  137 (376)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHH---------HTTCEEEECCBCTT--SCBC----HHHHHHHCC---
T ss_pred             hhhhcccccccccCcccccccccchhhHHHHHHHH---------hcCCEEEEEcCCCC--CeEC----HHHHHHhcC---
Confidence            988753 3344555566666666655444332110         11333332232111  1123    566666653   


Q ss_pred             CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc
Q 013235          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                       +++..|++.-+++.+|.+.+    ++++.++|+++  |+++++|.+|. +|..-     .+.....+|+++++  |-+|
T Consensus       138 -~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~~-----~d~~~~~~D~~~~s~~K~~g  206 (376)
T d1eg5a_         138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP-----FSLEKLEVDYASFSAHKFHG  206 (376)
T ss_dssp             -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC-----CCCTTTCCSEEEEEGGGGTS
T ss_pred             -CCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-ccccc-----ccccccCccceecccceeec
Confidence             37889999999999999988    99999998666  99999999995 54321     23333457888654  8765


Q ss_pred             CCccccccccCHH
Q 013235          328 NGIPLGAVVTTPE  340 (447)
Q Consensus       328 ~G~pigav~~~~~  340 (447)
                      . ...|++..+++
T Consensus       207 p-~G~~~l~~~~~  218 (376)
T d1eg5a_         207 P-KGVGITYIRKG  218 (376)
T ss_dssp             C-TTCEEEEECTT
T ss_pred             C-CCceeEEeccC
Confidence            2 22344444443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.17  E-value=5.6e-10  Score=108.47  Aligned_cols=285  Identities=16%  Similarity=0.121  Sum_probs=152.9

Q ss_pred             CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y  194 (447)
                      .+|+|.+|+...  ...|.+.. ....+.+..+.|++++..+ ...|+|+.|||+++++++....  ..++++++....+
T Consensus        29 v~~~Vl~am~~~--~~~hr~~e-f~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~--~~~~~~~~~~~~~  103 (377)
T d1vjoa_          29 AHPSVLQAMNVS--PVGHLDPA-FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--EPGDVVLIGVAGY  103 (377)
T ss_dssp             CCHHHHHHHSSC--CCCTTSHH-HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred             CCHHHHHHhCcC--CCCCCCHH-HHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc--ccccccceeeech
Confidence            357777665321  22332221 2456778888888887643 3578889999999999987543  3566777776666


Q ss_pred             ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (447)
Q Consensus       195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~  274 (447)
                      ++............         .......+.  ...  .+    .+..+......   ++..+.+.-+.+++|.+.+  
T Consensus       104 ~~~~~~~~~~~~~~---------~~~~~~~~~--~~~--~~----~~~~~~~~~~~---~~~~v~~~~~~~~tg~~~~--  161 (377)
T d1vjoa_         104 FGNRLVDMAGRYGA---------DVRTISKPW--GEV--FS----LEELRTALETH---RPAILALVHAETSTGARQP--  161 (377)
T ss_dssp             HHHHHHHHHHHTTC---------EEEEEECCT--TCC--CC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC--
T ss_pred             hhhhhhhhhhhhcc---------cccccccCC--CCc--cc----chhhhhhhhcC---cceeeeeeeeeccceeeec--
Confidence            55433322211110         111111111  000  11    12222222211   3445555567778899888  


Q ss_pred             ChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc---
Q 013235          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN---  349 (447)
Q Consensus       275 ~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~---  349 (447)
                        ++++.++|+++|+++++|.+|+ +|..-     ++......|+++++  |.++++--+|.+..+++..+......   
T Consensus       162 --i~~i~~~~~~~g~~~~vDa~~~-~g~~~-----~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~  233 (377)
T d1vjoa_         162 --LEGVGELCREFGTLLLVDTVTS-LGGVP-----IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKV  233 (377)
T ss_dssp             --CTTHHHHHHHHTCEEEEECTTT-TTTSC-----CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCC
T ss_pred             --hhhhhhhhhhccceEEEecchh-hhhhh-----hcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCC
Confidence              8899999999999999999996 43221     23334456888877  55554444566778888776544311   


Q ss_pred             ----------------ccccCCCChH-HHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCee--eEeec
Q 013235          350 ----------------YFNTFGGNPV-CTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIG--DVRGR  407 (447)
Q Consensus       350 ----------------~~~T~~~np~-a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~--~vrg~  407 (447)
                                      ...+....++ .+.+..++++.+++.   ...++.++...++.+.|.+..  +..+.  ..|..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~rs~  311 (377)
T d1vjoa_         234 ANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIG--LSLHVEKEYRLP  311 (377)
T ss_dssp             SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBSSCGGGBCS
T ss_pred             cceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccC--ceeecChHhcCC
Confidence                            0011222222 333333444444433   344555555666666665542  22211  12322


Q ss_pred             ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeecc
Q 013235          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFSQ  446 (447)
Q Consensus       408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~~  446 (447)
                      + ++.+.+.+        .....++.+.|++ .||.+..+
T Consensus       312 ~-v~~~~~p~--------~~~~~~l~~~L~~~~gI~v~~G  342 (377)
T d1vjoa_         312 T-LTTVCIPD--------GVDGKAVARRLLNEHNIEVGGG  342 (377)
T ss_dssp             S-EEEEECCT--------TCCHHHHHHHHHHHHCEECEEC
T ss_pred             e-EEEEECCC--------CCCHHHHHHHHHhcCCEEEecC
Confidence            2 23344321        1124568887765 49987643

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.15  E-value=8.7e-09  Score=100.22  Aligned_cols=285  Identities=14%  Similarity=0.075  Sum_probs=160.1

Q ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh
Q 013235          121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG  200 (447)
Q Consensus       121 ~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~  200 (447)
                      .+++.+.++..+.++.   -+...++++++++.+.  .+.+++++|||.|+.+|++... ..++++||+..-+|-.....
T Consensus         4 ~~~~~~~l~~~~~~~~---G~~~~~fE~~~~~~~~--~~~~~~~~SgT~Al~lal~~l~-~~~gdeVi~p~~t~~a~~~~   77 (374)
T d1o69a_           4 LKYIEEVFKSNYIAPL---GEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASVAP   77 (374)
T ss_dssp             HHHHHHHHHHTTTSCT---THHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGTHH
T ss_pred             HHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEeCCcchHhhHHH
Confidence            4678888877644321   3567789999999984  5689999999999999998653 44567898877776443333


Q ss_pred             hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHH
Q 013235          201 TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV  280 (447)
Q Consensus       201 ~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l  280 (447)
                      ...+             |...+.. |.....+ ..    ..+.++......+ ++.++++-...   |....    ++++
T Consensus        78 ~~~~-------------g~~pv~~-Di~~~~~-~~----~~~~~~~~~~~~~-~~~aii~~~~~---G~~~d----~~~i  130 (374)
T d1o69a_          78 ICYL-------------KAKPVFI-DCDETYN-ID----VDLLKLAIKECEK-KPKALILTHLY---GNAAK----MDEI  130 (374)
T ss_dssp             HHHT-------------TCEEEEE-CBCTTSS-BC----HHHHHHHHHHCSS-CCCEEEEECGG---GCCCC----HHHH
T ss_pred             Hhhc-------------cceeEec-ccccccc-cc----cccccccchhccc-ccccccccccc---cchhh----hHHH
Confidence            3222             2111111 0000000 11    1222222222223 34455544333   33333    9999


Q ss_pred             HHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCcccccccc-CHHHHHhhcC---Cc---
Q 013235          281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVT-TPEIAEVLTR---RN---  349 (447)
Q Consensus       281 ~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~-~~~i~~~l~~---~~---  349 (447)
                      .++|+++|++||.|-+|+ ||-   .+. -...|-.-|+.++|    |.++.|= -|++++ ++++++.+..   ..   
T Consensus       131 ~~~~~~~~i~vIED~a~a-~g~---~~~-~~~~G~~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~~~~~~~~~~~g~~~  204 (374)
T d1o69a_         131 VEICKENDIVLIEDAAEA-LGS---FYK-NKALGTFGEFGVYSYNGNKIITTSG-GGMLIGKNKEKIEKARFYSTQAREN  204 (374)
T ss_dssp             HHHHHHTTCEEEEECTTC-TTC---EET-TEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTCCCS
T ss_pred             HHHhhccCcchhhhhhhh-hcc---eEC-CeecCCCCceEEEeccCcccccccc-ceeehhhhHHHHHhhcccccccccc
Confidence            999999999999999997 432   111 13345556998876    8886321 144444 5777765532   10   


Q ss_pred             --------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC
Q 013235          350 --------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL  421 (447)
Q Consensus       350 --------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~  421 (447)
                              .+..+-.+.+.++.+++.|+.++  ++.++-+++.+++.+.|.+...............-+..+-+..++..
T Consensus       205 ~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~--~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  282 (374)
T d1o69a_         205 CLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNE  282 (374)
T ss_dssp             SSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred             ccccccccCCccccccchhhhhhHHHHhhhh--hhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccc
Confidence                    11234456888999999887664  35555566677777777654221111111111111111222111100


Q ss_pred             -------------CCCCHHHHHHHHHHHHhCCceeecc
Q 013235          422 -------------KTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       422 -------------~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                                   ..........+.+.|.++||-++.-
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~  320 (374)
T d1o69a_         283 LNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL  320 (374)
T ss_dssp             SCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred             ccccccccccchhhccchhhHHHHHHHHHHCCCCEEEe
Confidence                         0112234567999999999977653

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.15  E-value=7.6e-10  Score=108.71  Aligned_cols=297  Identities=13%  Similarity=0.084  Sum_probs=171.7

Q ss_pred             CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-c-----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-V-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~-----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA  170 (447)
                      ++..|||..      ..|..+..|.+|+.+.+....... .     ....+...+..++++++++.+.+.++|++++|++
T Consensus        26 ~~~iYLd~a------s~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~   99 (404)
T d1qz9a_          26 EGVIYLDGN------SLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN   99 (404)
T ss_dssp             TTCEECCTT------TSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCCEEcCCc------ccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence            456788864      345667889999988876531110 0     0112455678999999999888889999999999


Q ss_pred             HHHHHHHHH----hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235          171 NELAIMMAR----LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (447)
Q Consensus       171 ~e~Aik~ar----~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (447)
                      +..++..+.    .....+.+|+.+..++...........    +...  ..+.....         .+    .+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~---------~~----~~~~~~~  160 (404)
T d1qz9a_         100 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLA----DMLQ--QGYTLRLV---------DS----PEELPQA  160 (404)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHH----HHHC--SSCEEEEE---------SS----GGGHHHH
T ss_pred             HHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhh----eeee--eceecccc---------cc----chhHHHh
Confidence            988775332    123445666666655543322211100    0000  00111000         11    2344555


Q ss_pred             HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--c
Q 013235          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--K  324 (447)
Q Consensus       247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K  324 (447)
                      +.    .++..|.+..+++.+|.+.|    +++|.++|+++|+++++|-+|+ +|...     ++.....+|.++++  |
T Consensus       161 i~----~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~-----~~~~~~~~d~~~~s~~K  226 (404)
T d1qz9a_         161 ID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP-----VDLHQAGADYAIGCTYK  226 (404)
T ss_dssp             CS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC-----CCHHHHTCSEEEECSSS
T ss_pred             cC----CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-ccccc-----cccccccceEEEEechh
Confidence            43    37889999999999999998    9999999999999999999996 44221     23333456887765  7


Q ss_pred             cccCCc-cccccccCHHHHHhhcCCc-----------------------ccccCCCChHHHHHHHHHHHHHhh---hhHH
Q 013235          325 GIGNGI-PLGAVVTTPEIAEVLTRRN-----------------------YFNTFGGNPVCTAAGHAVLKVIQK---DKLQ  377 (447)
Q Consensus       325 ~lg~G~-pigav~~~~~i~~~l~~~~-----------------------~~~T~~~np~a~aaala~L~~i~~---~~l~  377 (447)
                      -+.+|- -.|++..+++..+.+....                       .+.....+..+.....+.++.+.+   +...
T Consensus       227 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  306 (404)
T d1qz9a_         227 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR  306 (404)
T ss_dssp             TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHH
Confidence            665432 2355556666554433110                       001122345555656666665544   3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--ee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235          378 NNAHVVGSYLKERLTALKDKYGI--IG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF  443 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~--i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv  443 (447)
                      ++...+..++...+..+....++  ++  +-.-+|.++.+.+        |+   ..++.+.|.++||++
T Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~--------~~---~~~v~~~L~~~gi~~  365 (404)
T d1qz9a_         307 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH--------PE---GYAVIQALIDRGVIG  365 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC--------TT---HHHHHHHHHTTTEEC
T ss_pred             HHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEec--------CC---HHHHHHHHHHCCCEE
Confidence            55555555555555555433221  11  1112234444443        22   356888999999876

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.14  E-value=1.5e-09  Score=105.91  Aligned_cols=285  Identities=13%  Similarity=0.066  Sum_probs=151.9

Q ss_pred             CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcc
Q 013235          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yH  195 (447)
                      +|+|++|+.+.  ...|.+. -..+.+.+..+.|++.+..+ .+.++|+.|||+|+++++.-...  ++++++++..+.+
T Consensus        29 ~~~V~~Am~~~--~~~hr~~-ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~--~~~~vl~~~~g~~  103 (388)
T d2ch1a1          29 SKRVLTAMTNT--VLSNFHA-ELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--EGDRVLIAVNGIW  103 (388)
T ss_dssp             CHHHHHHTTSC--CCCTTCH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHH
T ss_pred             CHHHHHHhCcC--CCCCCCH-HHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc--ccccccccccccc
Confidence            67877765322  1123221 12456677888888887643 45677888999999999986543  4566776666555


Q ss_pred             cCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCC
Q 013235          196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG  275 (447)
Q Consensus       196 G~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~  275 (447)
                      |...........         .....+..++..  .  .+    ...+++.+...   ++..+.+--+.+.+|.+.+   
T Consensus       104 ~~~~~~~~~~~~---------~~~~~~~~~~~~--~--~~----~~~~~~~~~~~---~~~~v~~~~~~t~tG~~~~---  160 (388)
T d2ch1a1         104 AERAVEMSERYG---------ADVRTIEGPPDR--P--FS----LETLARAIELH---QPKCLFLTHGDSSSGLLQP---  160 (388)
T ss_dssp             HHHHHHHHHHTT---------CEEEEEECCTTS--C--CC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC---
T ss_pred             cccchhhhhhhc---------cccccccccccc--c--cc----hhhhhhhhccC---Ccceeeeeecccccccccc---
Confidence            543332221110         012222222211  1  12    23333333322   3455666666677888887   


Q ss_pred             hHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc----
Q 013235          276 YLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN----  349 (447)
Q Consensus       276 ~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~----  349 (447)
                       ++++.++|+++|+++++|-+|+ +|.   ...  +.-+...|+++++  |++++.--+|.+..+++..+......    
T Consensus       161 -~~~i~~~~~~~~~~~~vD~~ss-~g~---~pi--d~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~  233 (388)
T d2ch1a1         161 -LEGVGQICHQHDCLLIVDAVAS-LCG---VPF--YMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSK  233 (388)
T ss_dssp             -CTTHHHHHHHTTCEEEEECTTT-BTT---BCC--CTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCS
T ss_pred             -hhhhcchhccccceeeeeeeec-ccc---ccc--chhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccc
Confidence             7888999999999999999997 432   122  2233456999888  55554233577778877666443210    


Q ss_pred             ------------------cccc-CCCChHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHhcCCeee--Ee
Q 013235          350 ------------------YFNT-FGGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGD--VR  405 (447)
Q Consensus       350 ------------------~~~T-~~~np~a~aaala~L~~i~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~i~~--vr  405 (447)
                                        ...| +..+.....+..++++.+..+...   .+.+....+++..+....- ...+.+  .|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r  312 (388)
T d2ch1a1         234 VFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGL-DIFVKDPRHR  312 (388)
T ss_dssp             CGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC-CBSSCSGGGB
T ss_pred             cccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccc-ccccCCHHHh
Confidence                              0011 223345555666777766554433   2223333333333333211 111111  22


Q ss_pred             ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ  446 (447)
Q Consensus       406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~  446 (447)
                      +. .++.+.+.+        .....++.+.|+++ ||.+..+
T Consensus       313 s~-~v~~~~~p~--------g~~~~~l~~~l~~~~gI~v~~G  345 (388)
T d2ch1a1         313 LP-TVTGIMIPK--------GVDWWKVSQYAMNNFSLEVQGG  345 (388)
T ss_dssp             CT-TEEEEECCT--------TCCHHHHHHHHHHHHCBCCBCC
T ss_pred             CC-eEEEEECCC--------CCCHHHHHHHHhhcCCEEEeCC
Confidence            22 234454421        11245688888765 9988754

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.13  E-value=2e-09  Score=105.62  Aligned_cols=281  Identities=15%  Similarity=0.118  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~  197 (447)
                      .+-.+++.+.++......  ...+...++++++++++  +.+.+++++|||.|+++|++.. ....+++||+..-+|...
T Consensus        13 ~~~~~~~~~~l~~g~~~~--~~g~~v~~fE~~~a~~~--g~~~~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a~   87 (384)
T d1b9ha_          13 DAERNGLVRALEQGQWWR--MGGDEVNSFEREFAAHH--GAAHALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFISS   87 (384)
T ss_dssp             HHHHHHHHHHHHTSCCBT--TTCSHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHH
T ss_pred             HHHHHHHHHHHHcCCeee--cCCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHc-CCCCCCEEEEeccccccc
Confidence            455778888888753211  12467789999999999  4578899999999999999854 344667899888777543


Q ss_pred             chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (447)
Q Consensus       198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l  277 (447)
                      ....+..+..           ...+.. ++  ..+..|    .+.+++.+.    .++.+|++....|.   ...    +
T Consensus        88 ~~ai~~~g~~-----------p~~~d~-~~--~~~~~d----~~~~~~~i~----~~tk~i~~~~~~g~---~~d----~  138 (384)
T d1b9ha_          88 SQAAQRLGAV-----------TVPVDV-DA--ATYNLD----PEAVAAAVT----PRTKVIMPVHMAGL---MAD----M  138 (384)
T ss_dssp             HHHHHHTTCE-----------EEEECB-CT--TTCCBC----HHHHHHHCC----TTEEEECCBCGGGC---CCC----H
T ss_pred             cccccccccc-----------cccccc-cc--cccccc----hhhhccccc----cccccccccccccc---ccc----c
Confidence            3333322211           111111 11  112123    455665542    36777776655543   333    8


Q ss_pred             HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcC---Cc
Q 013235          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTR---RN  349 (447)
Q Consensus       278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~---~~  349 (447)
                      ++++++|+++|+++|.|-+|+ +|-.   + .-...|-.-|+.++|    |.++.|- -|+++++ +++.+.+..   ..
T Consensus       139 ~~i~~~~~~~~i~lieD~a~a-~ga~---~-~g~~~g~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g  212 (384)
T d1b9ha_         139 DALAKISADTGVPLLQDAAHA-HGAR---W-QGKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHS  212 (384)
T ss_dssp             HHHHHHHHHHTCCBCEECTTC-TTCE---E-TTEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTB
T ss_pred             ccchhhhhhhhhhhhhhhcee-cccc---c-CCEecCcccccceecccccccccccc-cchhhhhhHHHHHHHHHHHhcC
Confidence            999999999999999999996 4321   1 112334445776644    8886432 2556654 555444321   00


Q ss_pred             --------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee---EeecceeEE
Q 013235          350 --------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD---VRGRGFLLG  412 (447)
Q Consensus       350 --------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~---vrg~Gl~~g  412 (447)
                                    .+..+--+++.++.++..|+.++  +..++-+++.+++.+.|.++..-.....+   .+....+..
T Consensus       213 ~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld--~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~  290 (384)
T d1b9ha_         213 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM  290 (384)
T ss_dssp             TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred             CCCccccccccccccccccccccchhhhhhhhhhhcc--cchhhhhhhhhhhhhhhhccccccccccccccccccccccc
Confidence                          11223346788888888887653  35555566677777776654211000001   111112222


Q ss_pred             EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      +.+ ..     .......++.+.|.++||-++..
T Consensus       291 ~~~-~~-----~~~~~Rd~l~~~L~~~GI~~~~~  318 (384)
T d1b9ha_         291 FRI-PG-----LTEERRNALVDRLVEAGLPAFAA  318 (384)
T ss_dssp             EEC-TT-----CCHHHHHHHHHHHHHTTCCEEEC
T ss_pred             cee-cc-----cccccHHHHHHHHHHCCCCeeee
Confidence            222 11     22234567999999999977643

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.10  E-value=2.7e-09  Score=104.15  Aligned_cols=197  Identities=16%  Similarity=0.084  Sum_probs=132.7

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-.  .+..+.++||..|+.+++....  ..++.||+.+..|+|........         .+
T Consensus        54 ~R~~nPT~~~LE~~la~LEg--~~~a~~~~SGmaAi~~~l~~l~--~~Gd~vl~~~~~Yg~t~~l~~~~---------~~  120 (392)
T d1gc0a_          54 SRISNPTLNLLEARMASLEG--GEAGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHG---------IG  120 (392)
T ss_dssp             ---CCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHT---------GG
T ss_pred             cCCCChHHHHHHHHHHHHhC--CcceeehhhHHHHHHHHHHhhc--cCCCeeecccccchhhhhhhhhh---------hc
Confidence            34567888899999999874  3567788999999999886443  36789999999998765543221         11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+....+. +      .|    .+++++.++    +++..|++|.+-++...++.    ++.|.++|+++|+++|+|.
T Consensus       121 ~~Gi~~~~~d-~------~d----~~~~~~ai~----~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDn  181 (392)
T d1gc0a_         121 EFGVKLRHVD-M------AD----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDN  181 (392)
T ss_dssp             GGTCEEEEEC-T------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEEC
T ss_pred             cCCcccccCC-c------cC----HHHHHHhCC----CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEec
Confidence            1244332211 0      23    466777664    36789999999999888887    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCC--CChHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLK  369 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~L~  369 (447)
                      ....    +   ..+.-+..-.|||+  ..|-++| | .-.|+++++++.+...........++  .+|..+...+..|+
T Consensus       182 T~at----P---~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~  254 (392)
T d1gc0a_         182 TYCT----P---YLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK  254 (392)
T ss_dssp             TTTH----H---HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred             CccC----c---cccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccc
Confidence            8751    1   11233333458886  5699986 4 66788888988776543221112223  35777777766665


Q ss_pred             HH
Q 013235          370 VI  371 (447)
Q Consensus       370 ~i  371 (447)
                      .+
T Consensus       255 TL  256 (392)
T d1gc0a_         255 TL  256 (392)
T ss_dssp             TH
T ss_pred             cH
Confidence            44

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.08  E-value=7.7e-09  Score=101.05  Aligned_cols=247  Identities=17%  Similarity=0.134  Sum_probs=153.5

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-+  .+.++.++||..|+.+++...  ...++.||+.+..|+|........         .+
T Consensus        62 ~R~~nPt~~~LE~~la~LEg--g~~a~~~sSGMaAi~~~l~~l--~~~Gd~iv~~~~~Yg~t~~l~~~~---------~~  128 (398)
T d1qgna_          62 GRYGNPTTVVLEEKISALEG--AESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETI---------LP  128 (398)
T ss_dssp             GGGCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHT---------GG
T ss_pred             cCCCChHHHHHHHHHHHHhC--CceEEEecCcchHHHHHHhhc--ccccccccccccccchhhhhhccc---------cc
Confidence            44568999999999999874  356788999999999988643  236788999888886554333221         11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHH-HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQ-DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le-~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D  294 (447)
                      ..|+.......       .+    .++.+ +++.    +++.+|++|.+-++...++.    +++|.++|+++|+++|+|
T Consensus       129 ~~gi~~~~~~~-------~~----~~~~~~~~~~----~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVD  189 (398)
T d1qgna_         129 KMGITATVIDP-------AD----VGALELALNQ----KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCID  189 (398)
T ss_dssp             GGTCEEEEECS-------SC----HHHHHHHHHH----SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred             ccccccccccc-------cc----hhhhhhhhcc----ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEec
Confidence            12333222111       11    22222 3333    37889999999888877776    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCC--CChHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVL  368 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~L  368 (447)
                      .....       ...++-+..-.|||+  +.|-++| | .-.|+++.+++++..+...  ...++  .+|..+...+..|
T Consensus       190 nT~at-------P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~--~~~~G~~l~p~~a~ll~rgl  260 (398)
T d1qgna_         190 GTFAT-------PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL--HHILGGALNPNAAYLIIRGM  260 (398)
T ss_dssp             CTTTC-------TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHG
T ss_pred             ceeec-------cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh--cccCCCcCCHHHHHHHHhcc
Confidence            98642       122333334468886  6699986 4 6678888898887766532  12233  3577776666555


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEeeCCCCCCCCHHHHH
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETL  430 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~~  430 (447)
                      +.+.-  .+++..+.+..+-+.|    +.|+.+..|                  .|.|-++.+++..+       .+.+.
T Consensus       261 ~TL~l--Rm~~~~~nA~~lA~~L----~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~-------~~~a~  327 (398)
T d1qgna_         261 KTLHL--RVQQQNSTALRMAEIL----EAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLTTA  327 (398)
T ss_dssp             GGHHH--HHHHHHHHHHHHHHHH----HTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHHHH
T ss_pred             hHHHH--HHHHHHHHHHHHHHHH----HhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCC-------HHHHH
Confidence            44321  1222233333333322    345555443                  34477888887422       23455


Q ss_pred             HHHHHH
Q 013235          431 YIMDKM  436 (447)
Q Consensus       431 ~~~~~l  436 (447)
                      +|++.|
T Consensus       328 ~f~~~L  333 (398)
T d1qgna_         328 KFVDAL  333 (398)
T ss_dssp             HHHHHC
T ss_pred             HHHHcC
Confidence            676665

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.1e-08  Score=99.46  Aligned_cols=236  Identities=14%  Similarity=0.058  Sum_probs=143.9

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-.  .+.++.++||..|+..++....  ..++.|++.+..|.|.........         +
T Consensus        45 ~R~~nPt~~~le~~la~LEg--g~~a~~~sSGMaAi~~~l~~l~--~~gd~vv~~~~~yg~t~~~~~~~~---------~  111 (384)
T d1cs1a_          45 SRRGNPTRDVVQRALAELEG--GAGAVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLA---------K  111 (384)
T ss_dssp             TTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHH---------T
T ss_pred             cCCCCHHHHHHHHHHHHHhC--CCceEEecChHHHHHHHHhhcc--cccceecccccccchhhhhhhhhh---------c
Confidence            34568888999999999874  3567889999999998886433  356778888777755433222111         1


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..++..... ++      .|    .+.+++.+..    ++.+|++|.+-++...++.    +++|.++|+++|+++|+|.
T Consensus       112 ~~g~~~~~~-d~------~d----~~~~~~~~~~----~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDN  172 (384)
T d1cs1a_         112 RGCYRVLFV-DQ------GD----EQALRAALAE----KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDN  172 (384)
T ss_dssp             TTSCEEEEE-CT------TC----HHHHHHHHHT----CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEEC
T ss_pred             ccccccccc-cC------CC----HHHHHhhccc----cccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEec
Confidence            123222211 10      23    4566666653    5679999999888877777    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~  370 (447)
                      .....       +.+.-...-.|||+  ..|-++| | .-.|+++++ +++.+.+.......-...+|..+...+..|+.
T Consensus       173 T~atP-------~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T  245 (384)
T d1cs1a_         173 TFLSP-------ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT  245 (384)
T ss_dssp             TTTCT-------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT
T ss_pred             cccCc-------ccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch
Confidence            87321       11222233358885  6699986 4 566777774 45555443211111112457777766665544


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe------------------ecceeEEEEEe
Q 013235          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR------------------GRGFLLGVEFV  416 (447)
Q Consensus       371 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------g~Gl~~giel~  416 (447)
                      +.-  .+++..+++..+-+.    .+.++.+..|.                  |.|.|+.+++.
T Consensus       246 L~l--Rm~~~~~nA~~lA~~----L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~  303 (384)
T d1cs1a_         246 LVP--RMELAQRNAQAIVKY----LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD  303 (384)
T ss_dssp             HHH--HHHHHHHHHHHHHHH----HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES
T ss_pred             hHH--HHHHHHHHHHHHHHh----cccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeec
Confidence            321  122222333333222    23556565443                  45788888884

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.05  E-value=9.7e-09  Score=100.22  Aligned_cols=197  Identities=16%  Similarity=0.128  Sum_probs=131.2

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-.+  +..++++||..|+.+++....  ..++.||+.++.|.|........         .+
T Consensus        58 ~R~~nPT~~~LE~~la~LEgg--~~a~~~sSGmaAi~~~l~~ll--~~Gd~vi~~~~~Yg~t~~~~~~~---------l~  124 (397)
T d1y4ia1          58 TRLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLC--QQGDHIVSASAIYGCTHAFLSHS---------MP  124 (397)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSSCHHHHHHHHTH---------HH
T ss_pred             eCCCCHHHHHHHHHHHHHhCC--ccceeehHHHHHHHHHHhhcc--CCCCeeeeecccccccchhhhcc---------cC
Confidence            345688889999999998743  556788999999988885332  36788999999887654433211         11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.......       .|    .+.+++.+.    +++.+|++|..-++...+..    +++|.++|+++|+++|+|-
T Consensus       125 ~~Gi~~~~vd~-------~d----~~~~~~~i~----~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDn  185 (397)
T d1y4ia1         125 KFGINVRFVDA-------GK----PEEIRAAMR----PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDN  185 (397)
T ss_dssp             HTTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEEC
T ss_pred             CCceEeeccCC-------CC----HHHHHHhcC----CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecC
Confidence            12443322110       23    456776663    37899999998888877776    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCCC--ChHHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGG--NPVCTAAGHAVLK  369 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~~--np~a~aaala~L~  369 (447)
                      ....       .+.++-...-.|||+  +.|-++| + .-.|+++++++.+..........++++  +|..+..++..|+
T Consensus       186 T~at-------P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~  258 (397)
T d1y4ia1         186 TFMS-------PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK  258 (397)
T ss_dssp             TTTC-------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred             cccC-------cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcC
Confidence            8642       122333333358886  5699986 3 667888899887765322112233343  4777776666665


Q ss_pred             HH
Q 013235          370 VI  371 (447)
Q Consensus       370 ~i  371 (447)
                      .+
T Consensus       259 TL  260 (397)
T d1y4ia1         259 TL  260 (397)
T ss_dssp             TH
T ss_pred             cH
Confidence            43

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.03  E-value=7.5e-09  Score=100.67  Aligned_cols=194  Identities=18%  Similarity=0.116  Sum_probs=123.8

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-.+  +.++.++||..|+. |+.  .....++.||+.+..| |.+...+...        .+
T Consensus        44 ~R~~nPt~~~le~~la~LE~~--~~a~~fsSGMaAis-all--~ll~~Gd~vv~~~~~Y-g~t~~l~~~~--------~~  109 (380)
T d1ibja_          44 TRSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALS-AVT--HLIKNGEEIVAGDDVY-GGSDRLLSQV--------VP  109 (380)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHH-HHH--TTSCTTCEEEEESSCC-HHHHHHHHHT--------SG
T ss_pred             eCCCChHHHHHHHHHHHHcCC--ceEEehhhHHHHHH-HHH--HhhCCCCEEEEEeccc-ccccchhhhh--------hc
Confidence            345678888999999988743  56788999999986 442  2334567888877766 4443333211        11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+.......       .+    .+++++.+.    .++.+|++|.+-++...++.    +++|.++|+++|+++|+|.
T Consensus       110 ~~gi~~~~~d~-------~~----~~~~~~ai~----~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDn  170 (380)
T d1ibja_         110 RSGVVVKRVNT-------TK----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDN  170 (380)
T ss_dssp             GGTCEEEEECT-------TS----HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEEC
T ss_pred             cccccccccCc-------ch----HHHHHHHhc----cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeec
Confidence            22433322110       12    456666653    37899999999999888887    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccC-HHHHHhhcCCcccccCC--CChHHHHHHHHHH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFG--GNPVCTAAGHAVL  368 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~--~np~a~aaala~L  368 (447)
                      ...+.       +.++-...-.|||+  +.|-++| | .-.|+++.+ +++.+.+...  ...++  .+|..+...+..|
T Consensus       171 T~atP-------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~--~~~~G~~l~p~~a~ll~rgl  241 (380)
T d1ibja_         171 SIMSP-------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL--QNSEGSGLAPFDCWLCLRGI  241 (380)
T ss_dssp             TTTCT-------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH--HHHTTCBCCHHHHHHHHHHH
T ss_pred             ccccc-------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhh--ccccCCcCCHHHHHHHHhcc
Confidence            87532       11233333468886  6699986 4 556776665 5555555421  12333  3477777666666


Q ss_pred             HHH
Q 013235          369 KVI  371 (447)
Q Consensus       369 ~~i  371 (447)
                      +.+
T Consensus       242 ~Tl  244 (380)
T d1ibja_         242 KTM  244 (380)
T ss_dssp             TTH
T ss_pred             hhh
Confidence            543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.01  E-value=4.8e-09  Score=105.14  Aligned_cols=236  Identities=11%  Similarity=0.030  Sum_probs=125.9

Q ss_pred             cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh-hhhccCC-CCccccc-c
Q 013235          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG-TMGATAQ-SNWKFNV-V  215 (447)
Q Consensus       139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~-~~~~t~~-~~~~~~~-~  215 (447)
                      +...+.|+.+++++.++  .++++|+.+||.++..|+..+.. .+++.||+ +...|.+... ...+.+. ..+.+.. .
T Consensus        64 ~~~~i~eae~~~A~~~g--a~~a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~-~~~~H~Sv~~~~~~l~~~~~~~~~~~~~  139 (462)
T d1c4ka2          64 HEGPAVAAEKHAARVYN--ADKTYFVLGGSSNANNTVTSALV-SNGDLVLF-DRNNHKSVYNSALAMAGGRPVYLQTNRN  139 (462)
T ss_dssp             TBTHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEE-ETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred             CCHHHHHHHHHHHHHhC--CCeEEEECCchHHHHHHHHHHhc-CCCCeEEe-cccchHHHHHHHHHHhcCCceeeecccc
Confidence            45678899999999984  57889999998877777654432 23455554 4555655442 3222221 1111110 0


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHH-HHHHHHHHH-----ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMY-AKDVQDLID-----FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~-~~~le~~i~-----~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~  289 (447)
                      ..+.....           +.+.. .+.+++.+.     .....+...+++..+++..|.+.+    +++|.++|+++|+
T Consensus       140 ~~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~  204 (462)
T d1c4ka2         140 PYGFIGGI-----------YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCD  204 (462)
T ss_dssp             TTCCEEEE-----------CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBS
T ss_pred             cccccCCC-----------ChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCC
Confidence            01111111           11110 112222211     111223445556677788899888    9999999999999


Q ss_pred             EEEEeccccCccccCCCcccc------cccCC--CCCEEEee--ccccCCcccccccc-CHHHHHh---------hcCC-
Q 013235          290 LCIADEVQAGFARTGSHFWGF------EAHGV--VPDIVTMA--KGIGNGIPLGAVVT-TPEIAEV---------LTRR-  348 (447)
Q Consensus       290 llI~DEv~tGfgr~G~~~~~~------~~~gv--~pDivt~s--K~lg~G~pigav~~-~~~i~~~---------l~~~-  348 (447)
                      +|++||++....... .....      ...+.  ..|+++++  |.+++. -.|+++. +.+.+..         +... 
T Consensus       205 ~l~vD~A~~~~~~~~-~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~-~~g~ll~~~~~~~~~~~~~~~~~~~~~~~  282 (462)
T d1c4ka2         205 YIEFDSAWVGYEQFI-PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHKKDSHIKGQLRYCDHKHFNNSF  282 (462)
T ss_dssp             EEEEECTTCCGGGSS-GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEEECGGGTTSTTCCCHHHHHHHH
T ss_pred             EEEEechhhcccccc-CcCCcchhhccccccccCCccEEEEecCcccccc-cceEEEEeccccccccchhhhHHHHHHhh
Confidence            999999986422111 11111      11111  23888755  888742 1233333 2222110         1100 


Q ss_pred             cccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHH
Q 013235          349 NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALK  395 (447)
Q Consensus       349 ~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~  395 (447)
                      ....|.+.+...++...+++..++.   +++.++..++.+++++++.++.
T Consensus       283 ~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~  332 (462)
T d1c4ka2         283 NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG  332 (462)
T ss_dssp             HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1223445555555555555655543   3566777788889999888864

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=98.97  E-value=5.2e-09  Score=101.86  Aligned_cols=275  Identities=17%  Similarity=0.091  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCccc
Q 013235          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-CNDIISLRNAYHG  196 (447)
Q Consensus       118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~-~~~ii~~~~~yHG  196 (447)
                      .+-.+++.+.++....+    ..+...+++++|++.+  +.+.+++++|||.|+.+|++......+ ++.||+..-+|..
T Consensus        12 ~~~~~~v~~~l~~~~~~----~G~~v~~fE~~~~~~~--g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a   85 (371)
T d2fnua1          12 KEDKKAVLEVLNSKQLT----QGKRSLLFEEALCEFL--GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVA   85 (371)
T ss_dssp             HHHHHHHHHHHTSSCCS----SSHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH
T ss_pred             HHHHHHHHHHHcCCCcc----CCHHHHHHHHHHHHHH--CcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccc
Confidence            45567888888765432    2456788999999999  456889999999999999996654434 3468776555543


Q ss_pred             CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (447)
Q Consensus       197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~  276 (447)
                      .....+. .            |...+..... ...+ .+.    +++++.+    ..++.+|++-...|   ....    
T Consensus        86 ~~~ai~~-~------------G~~pv~vDi~-~~~~-~~~----~~~~~~~----~~~t~avi~vh~~G---~~~~----  135 (371)
T d2fnua1          86 TANMLLE-S------------GYTPVFAGIK-NDGN-IDE----LALEKLI----NERTKAIVSVDYAG---KSVE----  135 (371)
T ss_dssp             HHHHHHH-T------------TCEEEECCBC-TTSS-BCG----GGSGGGC----CTTEEEEEEECGGG---CCCC----
T ss_pred             cceeeec-c------------Cccccccccc-cccc-ccc----hhhhhhc----cchhhccccccccc---cccc----
Confidence            2222222 1            2222222111 1111 111    2233222    23566666554444   3444    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcCC-cc
Q 013235          277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR-NY  350 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~~-~~  350 (447)
                      ++++.++|+++|+.+|.|-+|+ +|-    .+.-...|-.-|+.++|    |.++.|= -|+++++ +++.+.+... .+
T Consensus       136 ~~~i~~~~~~~~i~lIEDaaqa-~Ga----~~~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~  209 (371)
T d2fnua1         136 VESVQKLCKKHSLSFLSDSSHA-LGS----EYQNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSH  209 (371)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTC-TTC----EETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBT
T ss_pred             cccccccccccchhhccchhhc-cCc----eeccccCCcccccccccccccccccccc-ceEEEeechhhhhhccccccc
Confidence            8899999999999999999997 431    12224456667888776    8886432 2556654 5666554321 11


Q ss_pred             ---------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------Eeecce
Q 013235          351 ---------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------VRGRGF  409 (447)
Q Consensus       351 ---------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------vrg~Gl  409 (447)
                                     +..+--+.+.++.++..|+.++  +..++-+++.+++.+.|.+.    +.+.-      ....-.
T Consensus       210 g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~--~~~~~R~~~~~~y~~~l~~~----~~~~~~~~~~~~~~~~~  283 (371)
T d2fnua1         210 GMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNH  283 (371)
T ss_dssp             TEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCS
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhhhcc--chhhhhhhhhhhhccccccc----ccccccccccccccccc
Confidence                           1223345888888888887653  35555556666666655543    22211      111112


Q ss_pred             eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      .+.+.+.+.      ......++.+.|.++||-++..
T Consensus       284 ~~~i~~~~~------~~~~r~~~~~~L~~~gI~~~~~  314 (371)
T d2fnua1         284 LYPILMHQK------FFTCKKLILESLHKRGILAQVH  314 (371)
T ss_dssp             CEEEEECGG------GGGGHHHHHHHHHHTTEECBCC
T ss_pred             ccccccccc------chhHHHHHHHHHHHCCCCccee
Confidence            223333211      1112357899999999987654

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=3.6e-08  Score=96.18  Aligned_cols=235  Identities=13%  Similarity=0.063  Sum_probs=142.4

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-+  .+.++.++||..|+.+++....  ..++.||+.+..| |.+...+.-.        .+
T Consensus        53 ~R~~nPt~~~le~~la~LEg--~~~a~~~~SGMaAi~~~l~~l~--~~Gd~iv~~~~~Y-g~T~~l~~~~--------l~  119 (391)
T d1cl1a_          53 GRRGTLTHFSLQQAMCELEG--GAGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAY-EPSQDFCSKI--------LS  119 (391)
T ss_dssp             TTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTSC-HHHHHHHHHT--------GG
T ss_pred             ECCCChhHHHHHHHHHHHhC--CccEEEeccccceeeehhhccc--CCCCeEEEecccc-cchhhhhhhc--------cc
Confidence            45568999999999999874  3567889999999999876443  2567788777766 4443333211        11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh--CCEEEE
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIA  293 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~--g~llI~  293 (447)
                      ..|+.......       .|    .+++++.+    .+++.+|++|...++...++.    ++.+.++|+++  |+++|+
T Consensus       120 ~~Gi~~~~~d~-------~d----~~~~~~~i----~~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vV  180 (391)
T d1cl1a_         120 KLGVTTSWFDP-------LI----GADIVKHL----QPNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMI  180 (391)
T ss_dssp             GGTCEEEEECT-------TC----GGGGGGTC----CTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEE
T ss_pred             ccccccccccC-------cc----cccccccc----ccccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEE
Confidence            22443322110       12    23344333    347899999998888766666    99999999875  999999


Q ss_pred             eccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCC--CChHHHHHHHHH
Q 013235          294 DEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAV  367 (447)
Q Consensus       294 DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~  367 (447)
                      |......       +.++-+..-.|||+  +.|-++| | .-.|+++.++++.+.+....  ..++  .+|..+...+..
T Consensus       181 DnT~atP-------~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~--~~~G~~~~p~~a~ll~rg  251 (391)
T d1cl1a_         181 DNTWAAG-------VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQMVDADTAYITSRG  251 (391)
T ss_dssp             ECTTTTT-------TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTCCCCHHHHHHHHHH
T ss_pred             eccccch-------hhhcccccccceEEeecchhccccccccccceeccccccccchhhh--hcccccCCchhhhhhhcc
Confidence            9987532       11232333358886  5699986 4 56777888887766554321  1222  246666655555


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe------------------ecceeEEEEEee
Q 013235          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR------------------GRGFLLGVEFVT  417 (447)
Q Consensus       368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------g~Gl~~giel~~  417 (447)
                      |+.+.-  .+++..+.+..+-+    ..++|+.+..|.                  |.|-++.+++..
T Consensus       252 l~TL~l--R~~~~~~nA~~vA~----~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~  313 (391)
T d1cl1a_         252 LRTLGV--RLRQHHESSLKVAE----WLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK  313 (391)
T ss_dssp             HTTHHH--HHHHHHHHHHHHHH----HHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred             chhHHH--HHHHHHHHHHHHHH----HHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecC
Confidence            543321  12222233333322    234566666553                  445577788753

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=98.88  E-value=1.2e-07  Score=92.34  Aligned_cols=236  Identities=14%  Similarity=0.054  Sum_probs=140.9

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-+  .+..+.++||..|+..++....  .+++.|++-+..|. .+...+...        .+
T Consensus        54 sR~~nPT~~~le~~la~LEg--~~~a~~~sSGmaAi~~~~l~l~--~~gd~vv~~~~~yg-~t~~~~~~~--------~~  120 (394)
T d1e5ea_          54 TRLGNPTVSNLEGKIAFLEK--TEACVATSSGMGAIAATVLTIL--KAGDHLISDECLYG-CTHALFEHA--------LT  120 (394)
T ss_dssp             TTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCH-HHHHHHHTH--------HH
T ss_pred             cCCCCHHHHHHHHHHHHHhC--CcceeeeccchHHHHHHHHhhc--ccccccccccceee-hhhHhHHHH--------hh
Confidence            45568999999999999874  3557788999999998875332  25566766666664 433222110        11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-hCCEEEEe
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIAD  294 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-~g~llI~D  294 (447)
                      ..|+.......       .|    .+++++.++    ++..+|++|..-++...++.    ++++.+++++ +|+++|+|
T Consensus       121 ~~gi~~~~~d~-------~d----~~~~~~~i~----~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvD  181 (394)
T d1e5ea_         121 KFGIQVDFINT-------AI----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIAD  181 (394)
T ss_dssp             HTTCEEEEECT-------TS----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEE
T ss_pred             ccceeeeccCC-------CC----HHHHHHhhc----ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEec
Confidence            22333222110       12    345666553    36789999988888777766    8888876665 68999999


Q ss_pred             ccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCC--CChHHHHHHHHHH
Q 013235          295 EVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVL  368 (447)
Q Consensus       295 Ev~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~L  368 (447)
                      .....-       ..++-+..-.|||+  ..|-++| | .-.|+++++++..........-.+++  .+|..+...+..|
T Consensus       182 nT~atP-------~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl  254 (394)
T d1e5ea_         182 NTFCSP-------MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGL  254 (394)
T ss_dssp             CTTTCT-------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             CcccCc-------ccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhc
Confidence            987522       12233333348886  6699986 4 66788888888776543222222333  3477776666666


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe------------------ecceeEEEEEe
Q 013235          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR------------------GRGFLLGVEFV  416 (447)
Q Consensus       369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------g~Gl~~giel~  416 (447)
                      +.+.-  .+++..+++..+-+.    .+.++.+..|.                  |.|.|+.+++.
T Consensus       255 ~TL~l--Rm~r~~~nA~~lA~~----L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~  314 (394)
T d1e5ea_         255 STLNI--RMKAESENAMKVAEY----LKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK  314 (394)
T ss_dssp             TTHHH--HHHHHHHHHHHHHHH----HHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET
T ss_pred             hhHHH--HHHHHHHHHHHHHHH----HhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeecc
Confidence            44321  122223333333332    33556665554                  45778888774

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=98.85  E-value=4.3e-08  Score=93.61  Aligned_cols=225  Identities=16%  Similarity=0.070  Sum_probs=136.5

Q ss_pred             HHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC
Q 013235          145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN  224 (447)
Q Consensus       145 elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~  224 (447)
                      .|+++|+++-+  .+.++.++||..|+..++....  ..++.||+.+..|+|........         .+..|+.....
T Consensus         2 aLE~~la~Leg--~~~a~~~sSGMaAi~~~l~~ll--~~Gd~iv~~~~~Yg~t~~~~~~~---------l~~~gi~~~~~   68 (331)
T d1pffa_           2 ALEGKIAKLEH--AEACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQ---------LRKFGVEVDFI   68 (331)
T ss_dssp             HHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTH---------HHHTTCEEEEE
T ss_pred             HHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHH---------HHhcCeEEEEe
Confidence            47788888764  3567788999999998885332  25678998888886544332211         11224332221


Q ss_pred             CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHH-HHhCCEEEEeccccCcccc
Q 013235          225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFART  303 (447)
Q Consensus       225 p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tGfgr~  303 (447)
                      ..       .|    .+.+++.++    +++..|++|...++...++.    ++.+.+++ +++|+++|+|......   
T Consensus        69 d~-------~d----~~~~~~~i~----~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp---  126 (331)
T d1pffa_          69 DM-------AV----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP---  126 (331)
T ss_dssp             CT-------TS----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH---
T ss_pred             cc-------cc----hhhHhhhcc----cccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc---
Confidence            10       12    234554443    37789999988888766665    88888875 6789999999987532   


Q ss_pred             CCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCC--CChHHHHHHHHHHHHHhh--hh
Q 013235          304 GSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLKVIQK--DK  375 (447)
Q Consensus       304 G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~--~np~a~aaala~L~~i~~--~~  375 (447)
                          +.++-...-.|||+  +.|-++| | .-.|+++++++.............++  .+|..+...+..|+.+.-  +.
T Consensus       127 ----~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~  202 (331)
T d1pffa_         127 ----ILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKR  202 (331)
T ss_dssp             ----HHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                22333333359886  5699987 4 56788888877665433221122223  357777777777765531  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEe
Q 013235          376 LQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFV  416 (447)
Q Consensus       376 l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~  416 (447)
                      ..+|+.++.++|        ++|+.+..|                  .|.|.++.+++.
T Consensus       203 ~~~nA~~lA~~L--------~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~  253 (331)
T d1pffa_         203 AAENAQKVAEFL--------HEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD  253 (331)
T ss_dssp             HHHHHHHHHHHH--------HHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred             HHHHHHHHHHhh--------hhCCcEEeeccccccCccHHHHHhhcccccCcccceeec
Confidence            334444443333        345555444                  356888888884

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=2.3e-07  Score=90.28  Aligned_cols=209  Identities=18%  Similarity=0.159  Sum_probs=129.9

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-.  .+..+.++||..|+..++.+   ...++.||+....|.|........         .+
T Consensus        50 sR~gnPT~~~lE~~la~LE~--~~~a~~~sSGmaAi~~~l~~---l~~gd~iv~~~~~yg~t~~~~~~~---------l~  115 (393)
T d1n8pa_          50 SRSQNPNRENLERAVAALEN--AQYGLAFSSGSATTATILQS---LPQGSHAVSIGDVYGGTHRYFTKV---------AN  115 (393)
T ss_dssp             TTTCCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHT---SCSSCEEEEESSCCHHHHHHHHHT---------ST
T ss_pred             eCCCChHHHHHHHHHHHHhC--CceEEEecCchhHHHhhhhc---ccCCCeeeeeeeecccchhhhhhh---------hh
Confidence            34568888999999999874  35677899999888654432   235678999999886654433221         11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH----HhCCEE
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK----KAGGLC  291 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~----~~g~ll  291 (447)
                      ..|+.....         .+ .  .+++++.+.    ++..+|++|..-++...++.    +++|.++|+    ++|+++
T Consensus       116 ~~gi~~~~~---------~~-~--~~~~~~~i~----~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~l  175 (393)
T d1n8pa_         116 AHGVETSFT---------ND-L--LNDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVIL  175 (393)
T ss_dssp             TTCSCCEEE---------SS-H--HHHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEE
T ss_pred             cccceeEEe---------ec-c--hHHHHHHhh----hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceE
Confidence            123321111         11 0  345666653    37889999998888877776    999999998    678999


Q ss_pred             EEeccccCccccCCCcccccccCCCCCEEE--eeccccC-C-cccccccc-CHHHHHhhcCCcccccCC--CChHHHHHH
Q 013235          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVT-TPEIAEVLTRRNYFNTFG--GNPVCTAAG  364 (447)
Q Consensus       292 I~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~-~~~i~~~l~~~~~~~T~~--~np~a~aaa  364 (447)
                      |+|......       ..++-+..-.|||+  +.|-++| | .-.|+++. ++++.+.+....  ..++  .+|..+...
T Consensus       176 vVDnT~atP-------~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~--~~~G~~~~p~~a~ll  246 (393)
T d1n8pa_         176 VVDNTFLSP-------YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ--NAIGAIPSPFDAWLT  246 (393)
T ss_dssp             EEECTTTHH-------HHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH--HHHCCCCCHHHHHHH
T ss_pred             EEecCccCc-------ccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHH--hhcCCCCChHHHHHH
Confidence            999986421       12222233358886  6699986 4 66677664 456666664321  2222  357777776


Q ss_pred             HHHHHHHhh--hhHHHHHHHHHHHH
Q 013235          365 HAVLKVIQK--DKLQNNAHVVGSYL  387 (447)
Q Consensus       365 la~L~~i~~--~~l~~~~~~~g~~l  387 (447)
                      +..|+.+.-  +...+++.++.++|
T Consensus       247 ~rgl~Tl~lR~~~~~~nA~~lA~~L  271 (393)
T d1n8pa_         247 HRGLKTLHLRVRQAALSANKIAEFL  271 (393)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCcchhhHHHHHHHHHHHHHHHH
Confidence            666654421  22334444444444

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=1.3e-07  Score=92.85  Aligned_cols=167  Identities=21%  Similarity=0.221  Sum_probs=112.4

Q ss_pred             ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (447)
Q Consensus       136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~  215 (447)
                      .+..+|....|+++|+++-.  .+..+.++||..|+.+++....  ..++.||+.+..|+|........         .+
T Consensus        53 sR~~nPT~~~LE~~la~LE~--~~~a~~~~SGmaAi~~~~~~l~--~~gd~il~~~~~Yg~t~~l~~~~---------~~  119 (421)
T d2ctza1          53 SRIMNPTVDVLEKRLAALEG--GKAALATASGHAAQFLALTTLA--QAGDNIVSTPNLYGGTFNQFKVT---------LK  119 (421)
T ss_dssp             BTTBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--CTTCEEEECSCCCHHHHHHHHTH---------HH
T ss_pred             cCCCCHHHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHhhc--ccccceeecCCcCCchhHHHHHH---------Hh
Confidence            45568999999999999874  3567789999999988885432  35789999999997654433211         11


Q ss_pred             CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEec
Q 013235          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (447)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DE  295 (447)
                      ..|+....+..       .+.   .+..++.+    .+++.+|++|.+.++...++.    ++.|.++|+++|+++|+|.
T Consensus       120 ~~gi~~~~~d~-------~~~---~~~~~~~~----~~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDn  181 (421)
T d2ctza1         120 RLGIEVRFTSR-------EER---PEEFLALT----DEKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDN  181 (421)
T ss_dssp             HTTCEEEECCT-------TCC---HHHHHHHC----CTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEEC
T ss_pred             hccccceeccc-------ccC---cchhcccc----CCCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecc
Confidence            23443332211       110   23333333    247899999999998887877    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCH
Q 013235          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTP  339 (447)
Q Consensus       296 v~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~  339 (447)
                      ....    +  ...++-...-.|||+  ..|-++| | .-.|+|+.+.
T Consensus       182 T~a~----t--P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~  223 (421)
T d2ctza1         182 TFGM----G--GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG  223 (421)
T ss_dssp             GGGG----G--GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             cccc----c--ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence            8631    1  111223333458886  6699986 4 5667776554

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=4.8e-07  Score=90.02  Aligned_cols=295  Identities=13%  Similarity=0.002  Sum_probs=157.6

Q ss_pred             CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCCC-----ceEEEcCCHHHHHHHHHHHHHhhc------
Q 013235          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNL-----KVVFFTNSGTEANELAIMMARLYT------  182 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~~-----~~v~~~~sGseA~e~Aik~ar~~t------  182 (447)
                      -+|++.+.+.+.+++-......|+  .....+....|++++..+.     -.=.++.+|||||..|+..||...      
T Consensus        66 ~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~  145 (450)
T d1pmma_          66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA  145 (450)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh
Confidence            578888888777665322222233  2333456667777764211     123689999999999999887531      


Q ss_pred             ----CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235          183 ----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (447)
Q Consensus       183 ----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav  258 (447)
                          ....+++. .+.|-...-+....+.          ++..++. ++.  .+.-|    .++|++.++.    ++++|
T Consensus       146 ~g~~~~~~~~~~-~~~H~s~~Kaa~~~gi----------~~~~v~~-~~~--~~~~d----~~~L~~~i~~----~t~~V  203 (450)
T d1pmma_         146 AGKPTDKPNLVC-GPVQICWHKFARYWDV----------ELREIPM-RPG--QLFMD----PKRMIEACDE----NTIGV  203 (450)
T ss_dssp             HTCCCSCCEEEE-SSCCHHHHHHHHHTTC----------EEEECCC-BTT--BCSCC----HHHHHHHCCT----TEEEE
T ss_pred             cCCCCCCceEEe-cccHHHHHHHHHHcCC----------CceEeee-cCC--CCcCc----HHHHHHHhhh----CceEE
Confidence                12334444 4557655544433221          2233332 111  12234    5677777652    56677


Q ss_pred             EEccccCCCceeeCCCChHHHHHHHH------HHhCCEEEEeccccCccc--cCC-CcccccccCC-CCCEEEee--ccc
Q 013235          259 LSESIQGVGGIIELAPGYLPAVYKSI------KKAGGLCIADEVQAGFAR--TGS-HFWGFEAHGV-VPDIVTMA--KGI  326 (447)
Q Consensus       259 i~Epi~~~gG~~~~~~~~l~~l~~l~------~~~g~llI~DEv~tGfgr--~G~-~~~~~~~~gv-~pDivt~s--K~l  326 (447)
                      ++--....+|.+.+    +++|.++|      +++|+++.+|-++.|+--  .-. ..|.   +++ ..|-++++  |-+
T Consensus       204 v~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~---~~~~~aDSi~~s~HK~~  276 (450)
T d1pmma_         204 VPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD---FRLPRVKSISASGHKFG  276 (450)
T ss_dssp             ECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---TTSTTEEEEEEETTTTT
T ss_pred             EeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhh---hcccceeEeecChhhcc
Confidence            76656666677766    77666664      568999999999987521  100 1111   122 35778877  765


Q ss_pred             cCCccccccccCHHHH-H-hhcC-----Cccc--ccCC--CChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 013235          327 GNGIPLGAVVTTPEIA-E-VLTR-----RNYF--NTFG--GNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLT  392 (447)
Q Consensus       327 g~G~pigav~~~~~i~-~-~l~~-----~~~~--~T~~--~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~  392 (447)
                      ...+..|+++.+.+-. . .+..     ....  .|..  .+.....+...+|..+-.++   ..++..++.++|.++|+
T Consensus       277 ~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~  356 (450)
T d1pmma_         277 LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA  356 (450)
T ss_dssp             CCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556778888865422 1 1110     0001  1222  22233333455666555544   45666677777777776


Q ss_pred             HHHHhcCCeeeEe-ecce-eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          393 ALKDKYGIIGDVR-GRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       393 ~l~~~~~~i~~vr-g~Gl-~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      +.- .+.++.... ..++ .+.+.+.++....    .....+.+.|.++|.++.
T Consensus       357 ~~~-~~el~~~~~p~~~l~~V~Fr~~~~~~~~----~~~~~l~~~L~~~Gw~v~  405 (450)
T d1pmma_         357 KLG-PYEFICTGRPDEGIPAVCFKLKDGEDPG----YTLYDLSERLRLRGWQVP  405 (450)
T ss_dssp             TTS-CEEEEEECCTTTBSSEEEEEECTTCCCS----SCHHHHHHHHHTTTCBCC
T ss_pred             hCC-CeEEEeCCCCCCceEEEEEecCCcccCC----CCHHHHHHHHHHcCCeee
Confidence            641 112222111 1122 3445554321111    113468889999997653

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.57  E-value=1.4e-07  Score=90.90  Aligned_cols=284  Identities=10%  Similarity=-0.053  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHHHHhc----------ccccccccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCC
Q 013235          117 HPYVVDSIVNQIKRI----------QHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCN  185 (447)
Q Consensus       117 ~p~v~~A~~~~l~~~----------~~~~~~~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~  185 (447)
                      +++|.+|+.+++-.+          .|.+. .....+.+..+.|++++..+. ..|+|++++++++..|+.... ..+.+
T Consensus        15 p~~V~eam~~~~~~~~~~~~~~~~~sHRs~-ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l-~~~~~   92 (361)
T d2c0ra1          15 PLEVLERAQAEFVDYQHTGMSIMEMSHRGA-VYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF-LKEGQ   92 (361)
T ss_dssp             CHHHHHHHHHTSSSSTTSSSCGGGSCTTSH-HHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH-CCTTC
T ss_pred             CHHHHHHHHHHHhhhcccCccccccCcCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc-ccCCC
Confidence            689999998877442          12111 124566788899999886532 256676666555544443222 23445


Q ss_pred             eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccC
Q 013235          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG  265 (447)
Q Consensus       186 ~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~  265 (447)
                      +++...++..+....-+.-...         ..+..+..+  .....  +    .+++++.+.   .+.+..+..     
T Consensus        93 ~~l~~~~g~~~~~~~~~~~~~g---------~~~~~~~~~--~~~~~--~----~~~~~~~~~---~~~~~~v~~-----  147 (361)
T d2c0ra1          93 TANYVMTGSWASKALKEAKLIG---------DTHVAASSE--ASNYM--T----LPKLQEIQL---QDNAAYLHL-----  147 (361)
T ss_dssp             EEEEEECSHHHHHHHHHHHHHS---------CEEEEEECG--GGTTC--S----CCCGGGCCC---CTTEEEEEE-----
T ss_pred             ceEEEeechhhhhhhhhhhhcC---------ceeeeeccc--ccccc--c----hhhhhhhcc---cCcceEEEE-----
Confidence            6665655444333222211100         011111111  11110  1    112222221   224433332     


Q ss_pred             CCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhh
Q 013235          266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL  345 (447)
Q Consensus       266 ~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l  345 (447)
                      ++|...+    ++++.++|+++|+++++|-|++ +|-   ...-.+  .+..|+.+..|.++.+-..+.++..+.+.+.-
T Consensus       148 ~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g~---~~id~~--~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~  217 (361)
T d2c0ra1         148 TSNETIE----GAQFKAFPDTGSVPLIGDMSSD-ILS---RPFDLN--QFGLVYAGAQKNLGPSGVTVVIVREDLVAESP  217 (361)
T ss_dssp             ESEETTT----TEECSSCCCCTTSCEEEECTTT-TTS---SCCCGG--GCSEEEEETTTTTCCSSCEEEEEEGGGSSSCC
T ss_pred             eccccee----cceEEEeeccCCceEEEEeecc-ccc---cccccc--cceeEEEecccccccccCcEEEEEhHHhhhCc
Confidence            2344444    4466789999999999999996 432   122223  33447777788887321222233333222111


Q ss_pred             cCC-----------cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe------eeEeecc
Q 013235          346 TRR-----------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII------GDVRGRG  408 (447)
Q Consensus       346 ~~~-----------~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i------~~vrg~G  408 (447)
                      ...           .........+.........+..+...+.........+..+..+..........      .+.|..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~  297 (361)
T d2c0ra1         218 KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDM  297 (361)
T ss_dssp             TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSS
T ss_pred             cccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccce
Confidence            110           01112223344444444444444333333333333333333333333222111      1122222


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      . +.+.+        |+.....++.+.|.++||.++++
T Consensus       298 ~-~~~~~--------~~~~~~~~~~~~L~~~GI~~~~G  326 (361)
T d2c0ra1         298 N-ITFRL--------ASEELEKEFVKASEQEGFVGLKG  326 (361)
T ss_dssp             E-EEEEC--------SCHHHHHHHHHHHHHTTEESCBC
T ss_pred             E-EEEEC--------CCcccHHHHHHHHHHCCCEEecC
Confidence            1 22222        44455678999999999998765

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=7.2e-07  Score=86.42  Aligned_cols=263  Identities=14%  Similarity=0.086  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHH-hCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeE
Q 013235          142 AIADFAEALAS-KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (447)
Q Consensus       142 ~~~elae~L~~-~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~  220 (447)
                      .++.|+.+++. .+......| -..||+.||.+++...  ..++++|+.++... |.....-.       ........+.
T Consensus        72 ~iE~la~~ra~~lF~a~~anV-qp~SGs~AN~av~~Al--l~pGD~Il~l~l~~-GGHlshg~-------~~~~~g~~~~  140 (416)
T d1dfoa_          72 IVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTAL--LEPGDTVLGMNLAH-GGHLTHGS-------PVNFSGKLYN  140 (416)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH--CCTTCEEEEECTTT-TCCGGGTC-------TTSHHHHHSE
T ss_pred             HHHHHHHHHHHHHhCCCccee-ecccCccHHHHHHHHh--cCCCCeeeeccccc-cccccccc-------cccccCceEE
Confidence            34445544443 454332333 3689999999888743  34678888876543 33221110       0000000122


Q ss_pred             eecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-C
Q 013235          221 HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G  299 (447)
Q Consensus       221 ~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G  299 (447)
                      .++++....+ . .|    .++++++....   ++..||+-.  +.-    +-+--+++++++|++.|+++++|-.|. |
T Consensus       141 ~~~y~~d~~~-~-ID----yd~l~~~a~~~---kPklIi~G~--S~y----~r~~d~~~~reiad~vga~l~~D~aH~~G  205 (416)
T d1dfoa_         141 IVPYGIDATG-H-ID----YADLEKQAKEH---KPKMIIGGF--SAY----SGVVDWAKMREIADSIGAYLFVDMAHVAG  205 (416)
T ss_dssp             EEEECBCSSS-S-BC----HHHHHHHHHHH---CCSEEEEEC--SSC----CSCCCHHHHHHHHHHTTCEEEEECTTTHH
T ss_pred             EEecccCCcc-C-cc----HHHHHHHHHHh---ccceEEecc--ccc----ccccCHHHHHHHHHhcCceEEcchhhhhc
Confidence            2222211111 1 34    67787777765   445666642  111    122228999999999999999999975 2


Q ss_pred             ccccCCCcccccccCCCCCEEEee--ccccCCccccccccC---HHHHHhhcCCcccccCCCChHHHHHHHH-HHHHHhh
Q 013235          300 FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT---PEIAEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQK  373 (447)
Q Consensus       300 fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~---~~i~~~l~~~~~~~T~~~np~a~aaala-~L~~i~~  373 (447)
                      +--.|  .+ -.-+.. -|+||.+  |.|.| -+-|.++++   +++.+.+....+....+|+-....||++ +|....+
T Consensus       206 LIa~g--~~-~sP~~~-aDvvt~tThKtlrG-PrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~  280 (416)
T d1dfoa_         206 LVAAG--VY-PNPVPH-AHVVTTTTHKTLAG-PRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAME  280 (416)
T ss_dssp             HHHHT--SS-CCCTTT-SSEEEEESSSTTCC-CSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTS
T ss_pred             ceecc--cc-CCcccc-cceeeeehhhcccC-CCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcC
Confidence            32122  21 122332 4999754  98875 123445554   5777767655455666665444444443 3554332


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          374 ---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       374 ---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                         .++.+++.++.+.|.+.|.+.  .+.++..-. ..-++.+++.+..-       ...++.+.|.+-||++..
T Consensus       281 ~~fk~Y~~qvv~NA~~La~~L~~~--G~~iv~ggT-dnHlvlvdl~~~~~-------~G~~a~~~Le~~gI~~Nk  345 (416)
T d1dfoa_         281 PEFKTYQQQVAKNAKAMVEVFLER--GYKVVSGGT-DNHLFLVDLVDKNL-------TGKEADAALGRANITVNK  345 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGGSC-SSSEEEEECGGGTC-------CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC--CcccccCCC-CCceeEEEecccCC-------CHHHHHHHHHHcCeEEeC
Confidence               357788888888888888775  443332110 12345566633210       124455566677998864

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=2.8e-05  Score=77.37  Aligned_cols=173  Identities=14%  Similarity=0.012  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhCCCCC---------ceEEEcCCHHHHHHHHHHHHHhhc---------C-------CCeEEEEcCCcccCc
Q 013235          144 ADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT---------G-------CNDIISLRNAYHGNA  198 (447)
Q Consensus       144 ~elae~L~~~~~~~~---------~~v~~~~sGseA~e~Aik~ar~~t---------~-------~~~ii~~~~~yHG~~  198 (447)
                      .+..+.|+++++-+.         ..-+++++||+||..|+..||...         +       ++-+++....-|-+.
T Consensus       116 ~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si  195 (476)
T d1js3a_         116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSV  195 (476)
T ss_dssp             HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHH
T ss_pred             HHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHH
Confidence            345566677663221         235689999999999999998631         0       123555556666655


Q ss_pred             hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCCh
Q 013235          199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGY  276 (447)
Q Consensus       199 ~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~  276 (447)
                      ..+..+.+.          ++..++....    +.-|    .++|++.|++.  ....+.+|+..--....|.+-|    
T Consensus       196 ~ka~~~lGl----------~~~~v~~d~~----~~md----~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----  253 (476)
T d1js3a_         196 ERAGLIGGV----------KLKAIPSDGK----FAMR----ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----  253 (476)
T ss_dssp             HHHHHHHTC----------EEEEECCCTT----SCCC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred             HHHHHhcCc----------eEEEeccCCC----CCcC----HHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----
Confidence            555544332          3344443221    2235    45566555432  1235667777666666788887    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCH
Q 013235          277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP  339 (447)
Q Consensus       277 l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~  339 (447)
                      +++|.++|++||+.+.+|-++.|+...-.+. -.-..|+ ..|-+++.  |.+..-++.|+++.+.
T Consensus       254 l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~-~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~  318 (476)
T d1js3a_         254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEF-RHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKR  318 (476)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT-GGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESC
T ss_pred             HHHHHHHHHhcCcEEEEecccchhhhhhcch-hhhhcCCcccceeeecCccccccCCcceeecccc
Confidence            9999999999999999999998864332111 1111244 46888875  8776666778787764

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.52  E-value=9.1e-08  Score=91.85  Aligned_cols=187  Identities=9%  Similarity=-0.064  Sum_probs=101.4

Q ss_pred             CCHHHHHHHHHHHHhc----------ccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHHHHHHHhhcCC
Q 013235          116 CHPYVVDSIVNQIKRI----------QHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGC  184 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~----------~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~Aik~ar~~t~~  184 (447)
                      .+++|.+|+.+++..+          .|-+.. ......+..++|++++..+.+ .++|++++++++..+..... ..++
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~-~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~-~~~~   91 (360)
T d1w23a_          14 LPKPALERAQKELLNFNDTQMSVMELSHRSQS-YEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL-LTKG   91 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHH-HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-CCTT
T ss_pred             CCHHHHHHHHHHHHhhcccCccccccCcCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh-cccC
Confidence            4799999999987542          121111 134567788888888865444 57777777777665555433 3456


Q ss_pred             CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc
Q 013235          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (447)
Q Consensus       185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~  264 (447)
                      +.+++...+.++....-.......         .......+..  ...  +    .+++++.     ......+.++.+ 
T Consensus        92 ~~v~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~--~----~~~~~~~-----~~~~~~~~~~~~-  148 (360)
T d1w23a_          92 TIGNYVLTGSWSEKALKEAKLLGE---------THIAASTKAN--SYQ--S----IPDFSEF-----QLNENDAYLHIT-  148 (360)
T ss_dssp             CEEEEEECSHHHHHHHHHHHTTSE---------EEEEEECGGG--TSC--S----CCCGGGC-----CCCTTEEEEEEE-
T ss_pred             cccceeeccchhhhhHHHHHHhhh---------cceeeccccc--ccc--c----hhhhhhc-----ccccccceeEec-
Confidence            677766666555444332211100         0111111100  000  0    1111111     112334555544 


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCH
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTP  339 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~  339 (447)
                        +|.+.+    ++++.++|+++|+++|+|-||+ +|-   ...-++.++  .|+.+++|.++.+-+.+.++.++
T Consensus       149 --tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~---~~id~~~~~--vd~~~~~~~k~~~~~~~~~~~~~  211 (360)
T d1w23a_         149 --SNNTIY----GTQYQNFPEINHAPLIADMSSD-ILS---RPLKVNQFG--MIYAGAQKNLGPSGVTVVIVKKD  211 (360)
T ss_dssp             --SEETTT----TEECSSCCCCCSSCEEEECTTT-TTS---SCCCGGGCS--EEEEETTTTTSCTTCEEEEEEHH
T ss_pred             --CCcccc----ceeeeeccccceeeEEeecccc-ccc---ccccccccc--ceEEeeccccccCCcceeeEech
Confidence              345555    6678899999999999999997 431   122234444  48888888887543344444433

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.40  E-value=1.4e-05  Score=76.90  Aligned_cols=302  Identities=10%  Similarity=0.076  Sum_probs=160.3

Q ss_pred             eEEEecCCcccccCCCCCHHHHHHHHHHH-Hhcc--ccccccc-----chHHHHHHHHH-HHhCCCCCceEEEcCCHHHH
Q 013235          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQ--HSTVLYL-----NHAIADFAEAL-ASKMPGNLKVVFFTNSGTEA  170 (447)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l-~~~~--~~~~~~~-----~~~~~elae~L-~~~~~~~~~~v~~~~sGseA  170 (447)
                      ..|.+.++-+     +..|.|.++...-+ .++.  +...+|.     -+.+++++.++ .+.+....-.| =.-||+.|
T Consensus        24 ~~l~LiaSEN-----~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anV-qp~SGs~A   97 (405)
T d1kl1a_          24 AKIELIASEN-----FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANV-QPHSGAQA   97 (405)
T ss_dssp             HSEECCTTCC-----CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEEC-CCSSHHHH
T ss_pred             cCceEeccCC-----cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCccee-eccCchHH
Confidence            3455655444     24578877765544 3332  1112221     12333444333 34454332222 36799999


Q ss_pred             HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (447)
Q Consensus       171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (447)
                      |.++....  ..++++|+.++-..=|+.......        .........+.+|.... .+..|    .+++++++...
T Consensus        98 n~av~~al--l~pGD~im~l~l~~GGHlshg~~~--------~~~g~~~~~~~y~~d~~-~~~ID----~d~l~~~a~~~  162 (405)
T d1kl1a_          98 NMAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPV--------NFSGVQYNFVAYGVDPE-THVID----YDDVREKARLH  162 (405)
T ss_dssp             HHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTT--------SHHHHHSEEEEECBCTT-TCSBC----HHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCCCEEEEeecccccccccCccc--------cccceEEEEEEeccchh-ccccc----HHHHHHHHHhh
Confidence            98877643  336788888865443322111000        00000122222222111 11134    67788877765


Q ss_pred             CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee--cccc
Q 013235          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (447)
Q Consensus       251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  327 (447)
                         ++..||+-.-      .-+-+--+++++++|++.|++|++|=.+. |+--.|  .+- .-+. ..|+||++  |.|.
T Consensus       163 ---kPklIi~G~S------~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g--~~~-~P~~-~aDvvt~tThKtlr  229 (405)
T d1kl1a_         163 ---RPKLIVAAAS------AYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAG--LHP-NPVP-YAHFVTTTTHKTLR  229 (405)
T ss_dssp             ---CCSEEEECCS------SCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTT--SSC-CSTT-TCSEEEEESSSTTC
T ss_pred             ---CcceEEeccc------ccccccChHHHHHHHhhhCCEEecchhhHhhhhhhh--hcC-Chhh-hhhheecccccccc
Confidence               4456776431      12222238999999999999999998864 231122  221 1222 25999876  8887


Q ss_pred             CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHH-HHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (447)
Q Consensus       328 ~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala-~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~  403 (447)
                      | -+-|.+++++++.+.+....+....++.-....||++ +|....+   .++.+++.++.+.|-+.|.+.  .+.++..
T Consensus       230 G-Prgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~--G~~vv~g  306 (405)
T d1kl1a_         230 G-PRGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTLVSG  306 (405)
T ss_dssp             C-CSCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGG
T ss_pred             C-CCCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--CceeecC
Confidence            4 2446678899888888765555666665555555544 3444322   357778888888888888764  3433321


Q ss_pred             EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                      -. ..-++.+++.+..    -.   ..+..+.|-+-||++..+
T Consensus       307 gT-d~H~vlvdl~~~~----~~---g~~ae~~Le~agI~~Nkn  341 (405)
T d1kl1a_         307 GT-DNHLLLVDLRPQQ----LT---GKTAEKVLDEVGITVNKN  341 (405)
T ss_dssp             SC-SSSEEEEECGGGT----CC---HHHHHHHHHHHTEECEEC
T ss_pred             CC-ccceeeccccccC----Cc---HHHHHHHHHHcCeEEcCC
Confidence            00 1234555553221    11   233334456669988743

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=5.3e-06  Score=78.64  Aligned_cols=287  Identities=9%  Similarity=-0.058  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHHhcc----------cccccccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCC
Q 013235          116 CHPYVVDSIVNQIKRIQ----------HSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGC  184 (447)
Q Consensus       116 ~~p~v~~A~~~~l~~~~----------~~~~~~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~  184 (447)
                      .+|+|.+|+.+++..+.          |-+.. ....+.+..+.|+++++... ..|+|++++++++..++.... ..++
T Consensus        12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~e-f~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~-~~~~   89 (360)
T d1bjna_          12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKE-FIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI-LGDK   89 (360)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHH-HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-CTTC
T ss_pred             CCHHHHHHHHHHHhhhcccCccccccCcCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc-cccc
Confidence            47999999999875432          21110 12446778888888886543 367777666666655543222 3345


Q ss_pred             CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc
Q 013235          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (447)
Q Consensus       185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~  264 (447)
                      +.+++..+.+.|....-+...           .+...+..........  +    .+++++.+..  ..++.+|...  .
T Consensus        90 ~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~----~~~~~~~~~~--~~~~v~v~~~--~  148 (360)
T d1bjna_          90 TTADYVDAGYWAASAIKEAKK-----------YCTPNVFDAKVTVDGL--R----AVKPMREWQL--SDNAAYMHYC--P  148 (360)
T ss_dssp             CEEEEEESSHHHHHHHHHHTT-----------TSEEEEEECEEEETTE--E----EECCGGGCCC--CSSCSCEEEC--S
T ss_pred             cccceecccchhhhhHHHHhh-----------cCccceeeccccCCCc--c----hhhhhhhhcc--CCceeEEEec--c
Confidence            555555444433322222111           1111111111000000  0    0111111111  1133333322  2


Q ss_pred             CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHh
Q 013235          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV  344 (447)
Q Consensus       265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~  344 (447)
                      +.+|...+.+.    +  .++.+++++++|-++. ++..-     ++..++..|+.+.+|.++.+.+.+.++.++...+.
T Consensus       149 ~~t~~~~~~~~----i--~~~~~~~~v~vDa~~~-~~~~~-----vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~  216 (360)
T d1bjna_         149 NETIDGIAIDE----T--PDFGADVVVAADFSST-ILSRP-----IDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA  216 (360)
T ss_dssp             EETTTTEECCC----C--CCCCTTCCEEEECTTT-TTSSC-----CCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCC
T ss_pred             cccccCccccc----e--ecccccceeeeeeecc-cccee-----eeeccceeEEEEcccccccCCCceeEeeehhhhhc
Confidence            23344443332    2  3567899999998774 43221     23444544666777999865445555544433221


Q ss_pred             hcCCc----------c-cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe-----eeEeecc
Q 013235          345 LTRRN----------Y-FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII-----GDVRGRG  408 (447)
Q Consensus       345 l~~~~----------~-~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i-----~~vrg~G  408 (447)
                      .....          . ..+....+.....+......+..+...+...+.-......+.+........     ...|..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~  296 (360)
T d1bjna_         217 NIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRM  296 (360)
T ss_dssp             CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSS
T ss_pred             cccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccce
Confidence            11110          0 112223333333333333333333333333333333333333333332221     1223333


Q ss_pred             eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ  446 (447)
Q Consensus       409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~  446 (447)
                       .+.+.+        |+......+.+.|.++||.+..+
T Consensus       297 -v~~f~~--------~~~~~~~~~~~~l~~~Gi~~~~G  325 (360)
T d1bjna_         297 -NVPFQL--------ADSALDKLFLEESFAAGLHALKG  325 (360)
T ss_dssp             -EEEEEE--------SSGGGHHHHHHHHHHTTEECCBC
T ss_pred             -EEEEEc--------CCcccHHHHHHHHHHCCCEeecC
Confidence             344555        22233466888899999988654

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.90  E-value=0.00039  Score=67.81  Aligned_cols=248  Identities=15%  Similarity=0.072  Sum_probs=126.5

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235          164 TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (447)
Q Consensus       164 ~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (447)
                      ..||+.||.++.....  .++++|+.++-.-=|...... .+.  ..+.......+..+.++..... ...|    .+++
T Consensus       103 p~SGs~An~av~~all--~pgD~im~~~l~~GGHlshg~-~~~--~~~~~~~~~~~~~~~y~v~~~~-~~ID----yd~l  172 (470)
T d1rv3a_         103 PYSGSPANFAVYTALV--EPHGRIMGLDLPDGGHLTHGF-MTD--KKKISATSIFFESMAYKVNPDT-GYID----YDRL  172 (470)
T ss_dssp             CSSHHHHHHHHHHHHT--CTTCEEEEECGGGTCCGGGCC-BCS--SCBCSHHHHHSEEEEECBCTTT-CSBC----HHHH
T ss_pred             ccCCccHHHHHHHHhc--CCCCeEeeeccccCCcccccc-ccc--CCCcccccceeEeeEEEEeccc-Cccc----HHHH
Confidence            5699999998887433  367888887543222211100 000  0010000001222222211110 1124    5778


Q ss_pred             HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEe
Q 013235          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTM  322 (447)
Q Consensus       244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~  322 (447)
                      +++..+.   ++..||+-.      ..-+-+--+++++++|++.|++|++|=.|. |+--.|  .+- .-+.. -|+||.
T Consensus       173 ~~~a~~~---kPklIi~G~------S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g--~~~-sPl~~-aDvvt~  239 (470)
T d1rv3a_         173 EENARLF---HPKLIIAGT------SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAG--VVP-SPFEH-CHVVTT  239 (470)
T ss_dssp             HHHHHHH---CCSEEEECC------SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT--SSC-CGGGT-CSEEEE
T ss_pred             HHHHHhh---CcceEeech------hhccccCCHHHHHHHHhccCCeEEecchhhhhhcccc--ccC-Chhhe-eeeeee
Confidence            7777655   445677643      222223338999999999999999999865 332223  221 12222 499986


Q ss_pred             e--ccccCCccccccccCH---------------HHHHhhcCCcccccCCCChHHHHHHHH-HHHHHhhh---hHHHHHH
Q 013235          323 A--KGIGNGIPLGAVVTTP---------------EIAEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQKD---KLQNNAH  381 (447)
Q Consensus       323 s--K~lg~G~pigav~~~~---------------~i~~~l~~~~~~~T~~~np~a~aaala-~L~~i~~~---~l~~~~~  381 (447)
                      +  |.|.| -+-|.+++++               ++.+.+....+.++.+|.-....||++ +|....++   ++.+++.
T Consensus       240 tTHKtlrG-PrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv  318 (470)
T d1rv3a_         240 TTHKTLRG-CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVV  318 (470)
T ss_dssp             ESSGGGCC-CSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             ehhhhccC-CcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            6  88864 1223455543               255555544444566665555555554 45544333   4556666


Q ss_pred             HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       382 ~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      ++.+.|-+.|.+.  .+.++..-. ..-++.+++....-       ...++.+.|.+-||.+..
T Consensus       319 ~NAk~La~~L~~~--G~~v~~ggT-dnHlvlvdl~~~g~-------~g~~ae~~Le~~gI~~Nk  372 (470)
T d1rv3a_         319 ANCRALSAALVEL--GYKIVTGGS-DNHLILVDLRSKGT-------DGGRAEKVLEACSIACNK  372 (470)
T ss_dssp             HHHHHHHHHHHHT--TCEEGGGSC-SSSEEEEEGGGGTC-------CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHhC--CceeccCCC-CCceEEEeecccCC-------cHHHHHHHHHHcCcEECC
Confidence            7777777766654  333322110 12344444422110       123445556677998864

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=0.0015  Score=63.55  Aligned_cols=255  Identities=15%  Similarity=0.106  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHhCCCCCceEE-EcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCe
Q 013235          141 HAIADFAEALASKMPGNLKVVF-FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (447)
Q Consensus       141 ~~~~elae~L~~~~~~~~~~v~-~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~  219 (447)
                      ..+.+|-+.|+++.  +++.+= -...|+.|.-.++.+++.+++++++++.+. -|..+.+++.....        ..|+
T Consensus       108 q~l~e~q~~l~elt--Gmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~-~~p~~~~v~~t~a~--------~~g~  176 (437)
T d1wyua1         108 QATFEYQTMIAELA--GLEIANASMYDGATALAEGVLLALRETGRMGVLVSQG-VHPEYRAVLRAYLE--------AVGA  176 (437)
T ss_dssp             HHHHHHHHHHHHHH--TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETT-SCHHHHHHHHHHHH--------HTTC
T ss_pred             HHHHHHHHHHHHhh--CCCccccCchHHHHHHHHHHHHHHhhhcccccccccc-cChHHhhhhhhhcc--------ccee
Confidence            34568888899887  566432 245899999999999999999999887554 44444443322211        1133


Q ss_pred             EeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC
Q 013235          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (447)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG  299 (447)
                      ..+..|...   .+.+.    .+        -.+++|+|++... +.-|.+..    ++++.+++++.|+++|+|=-...
T Consensus       177 ~vv~v~~~~---~~~~~----~~--------~~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~a  236 (437)
T d1wyua1         177 KLLTLPLEG---GRTPL----PE--------VGEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS  236 (437)
T ss_dssp             EEEEECCBT---TBCCC----CC--------CCTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG
T ss_pred             eEEeeeccc---ccchh----hh--------hccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhh
Confidence            333322110   00110    00        1358888877643 44566643    89999999999999887743322


Q ss_pred             ccccCCCcccccccCCCCCEEEe-ecccc-----CCccccccccCHHHHHhhcCCcc-----------------------
Q 013235          300 FARTGSHFWGFEAHGVVPDIVTM-AKGIG-----NGIPLGAVVTTPEIAEVLTRRNY-----------------------  350 (447)
Q Consensus       300 fgr~G~~~~~~~~~gv~pDivt~-sK~lg-----~G~pigav~~~~~i~~~l~~~~~-----------------------  350 (447)
                      ++  +  +-.-..+|.  ||++. +|.+|     ||-..|.+.+++++...+..+..                       
T Consensus       237 l~--~--l~~Pg~~Ga--Di~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhI  310 (437)
T d1wyua1         237 LG--V--LKPPGAYGA--DIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI  310 (437)
T ss_dssp             GG--T--BCCHHHHTC--SEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred             hh--c--ccccccccc--ceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccc
Confidence            21  1  111122344  88853 35544     34457888889888776654211                       


Q ss_pred             ------cccCCCChHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC
Q 013235          351 ------FNTFGGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL  421 (447)
Q Consensus       351 ------~~T~~~np~a~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~  421 (447)
                            .+...++.+.+..+..-+..+-.+++   .+++..+..|+.++|.++    +.+..+.....|--+-+..+.  
T Consensus       311 rRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~----~g~~~~~~~~~f~ef~v~~~~--  384 (437)
T d1wyua1         311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALALPK--  384 (437)
T ss_dssp             HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEECSS--
T ss_pred             cccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc----CCeeccCCCCeeeEEEEECCC--
Confidence                  11233444444444444544444443   455666677888777664    112111112222222221111  


Q ss_pred             CCCCHHHHHHHHHHHHhCCceee
Q 013235          422 KTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       422 ~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                            .+..+.+.|+++|+..+
T Consensus       385 ------~~~~i~k~L~d~G~~~~  401 (437)
T d1wyua1         385 ------DPEAVRRALAERGFHGA  401 (437)
T ss_dssp             ------CHHHHHHHHHHTTCCCC
T ss_pred             ------CHHHHHHHHHhCCCCCC
Confidence                  14678999999999754

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.79  E-value=0.00027  Score=68.79  Aligned_cols=182  Identities=10%  Similarity=0.026  Sum_probs=101.6

Q ss_pred             HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCC
Q 013235          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPD  318 (447)
Q Consensus       240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pD  318 (447)
                      .++++++..+.   ++..||+-.      ..-+-+--+++++++|++.|++|++|=.+. |+--.|  .+- .-+.. -|
T Consensus       165 yd~~~~~a~~~---kPklIi~G~------S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g--~~~-sP~~~-aD  231 (463)
T d2a7va1         165 YNQLALTARLF---RPRLIIAGT------SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAK--VIP-SPFKH-AD  231 (463)
T ss_dssp             HHHHHHHHHHH---CCSEEEECC------SSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTT--SSC-CGGGT-CS
T ss_pred             HHHHHHHHhhc---CCceEEecc------cccccccCHHHHHHHhhcccceEEechhhhhHHhhhh--hhc-Chhhh-hh
Confidence            67788777765   445677643      122223338999999999999999999875 232122  221 12222 49


Q ss_pred             EEEee--ccccCCccccccccCH---------------HHHHhhcCCcccccCCCChHHHHHHHH-HHHHHhhh---hHH
Q 013235          319 IVTMA--KGIGNGIPLGAVVTTP---------------EIAEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQKD---KLQ  377 (447)
Q Consensus       319 ivt~s--K~lg~G~pigav~~~~---------------~i~~~l~~~~~~~T~~~np~a~aaala-~L~~i~~~---~l~  377 (447)
                      +||.+  |.|.| -+-|.+++++               ++.+.+....+....+|.-....||++ ++....++   ++.
T Consensus       232 vvt~tTHKTlrG-PrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya  310 (463)
T d2a7va1         232 IVTTTTHKTLRG-ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYS  310 (463)
T ss_dssp             EEEEESSGGGCS-CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             hhhchhhhhhcC-CCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHH
Confidence            99876  88875 1223455544               445555443344555665555555554 34443333   466


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS  445 (447)
Q Consensus       378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~  445 (447)
                      +++.++.+.|-+.|.+.  .+.++..-.- .-++.+++.+..    .   ......+.|-+.||.+..
T Consensus       311 ~qVv~NAk~La~~L~~~--G~~vv~ggTd-nHlvlvdl~~~~----~---~G~~ae~~Le~~gI~~Nk  368 (463)
T d2a7va1         311 LQVLKNARAMADALLER--GYSLVSGGTD-NHLVLVDLRPKG----L---DGARAERVLELVSITANK  368 (463)
T ss_dssp             HHHHHHHHHHHHHHHHT--TCEEGGGSCS-SSEEEEECTTTT----C---CHHHHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHhC--CCeeecCCCC-CceeeeeccccC----C---CHHHHHHHHHhccCccCC
Confidence            77777788887777765  3433321000 123345542211    1   134455567778988864

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=0.0026  Score=62.51  Aligned_cols=279  Identities=19%  Similarity=0.228  Sum_probs=147.9

Q ss_pred             CCCHHHHHHHHHHHHhccccccccc-------chHHHHHHHHHHHhCCCCCceEEE-cCCHHHHHHHHHHHHHhhcC---
Q 013235          115 HCHPYVVDSIVNQIKRIQHSTVLYL-------NHAIADFAEALASKMPGNLKVVFF-TNSGTEANELAIMMARLYTG---  183 (447)
Q Consensus       115 h~~p~v~~A~~~~l~~~~~~~~~~~-------~~~~~elae~L~~~~~~~~~~v~~-~~sGseA~e~Aik~ar~~t~---  183 (447)
                      |=+|.|++.+.+   .+...+...+       -..+-|+-..|++++  +++.+=. ...|+.|.-.|+.+|+.+++   
T Consensus        76 hy~P~v~~~~~~---~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLT--GMdvaNaS~yDGatA~aeA~~ma~r~~~~~~  150 (471)
T d1wyub1          76 KYNPKLHEEAAR---LFADLHPYQDPRTAQGALRLMWELGEYLKALT--GMDAITLEPAAGAHGELTGILIIRAYHEDRG  150 (471)
T ss_dssp             CCCCHHHHHHHH---TTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHH--TCSEEECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCcchhhhHHH---HHhccCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCccccccchHHHHHHHHHHHHHHHhhhcc
Confidence            556888887764   2221122211       123457888888888  5674311 24787788778887766532   


Q ss_pred             ---CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235          184 ---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (447)
Q Consensus       184 ---~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~  260 (447)
                         +..++.....+|..........            +...+..+....+.  .+    .+.++...    .++++++++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~----~~~~~~~~----~~~~a~v~v  208 (471)
T d1wyub1         151 EGRTRRVVLVPDSAHGSNPATASMA------------GYQVREIPSGPEGE--VD----LEALKREL----GPHVAALML  208 (471)
T ss_dssp             CTTTCCEEEEETTSCTHHHHHHHHT------------TCEEEEECBCTTSS--BC----HHHHHHHC----STTEEEEEE
T ss_pred             cccccccccCCcccccceeeeeecc------------cceeeccccccccc--cc----chhhhhhh----hccccceee
Confidence               1234555555554433332221            11222211111110  12    23333322    347888888


Q ss_pred             ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc----CccccCCCcccccccCCCCCEEEe--ecccc----C-C
Q 013235          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA----GFARTGSHFWGFEAHGVVPDIVTM--AKGIG----N-G  329 (447)
Q Consensus       261 Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t----Gfgr~G~~~~~~~~~gv~pDivt~--sK~lg----~-G  329 (447)
                      ...+..|....    ..+++.++++++|.++++|=+.-    ++-+.|       .++  -|+++.  ++.+|    + |
T Consensus       209 ~~p~~~g~~e~----~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~-------~~g--~div~vg~~q~~G~P~~~GG  275 (471)
T d1wyub1         209 TNPNTLGLFER----RILEISRLCKEAGVQLYYDGANLNAIMGWARPG-------DMG--FDVVHLNLHKTFTVPHGGGG  275 (471)
T ss_dssp             CSSCTTSCCCT----THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHH-------HHT--CSEEECCTTTTTCCCCTTSC
T ss_pred             ccCCCcccccc----hhhhhHHHHHhccccccccccchhhhhhccccC-------ccc--cccccccccccccccccccc
Confidence            76665554433    37889999999999888775422    121111       111  266654  35554    3 3


Q ss_pred             ccccccccCHHHHHhhcCCc----------------cc---ccCCCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHH
Q 013235          330 IPLGAVVTTPEIAEVLTRRN----------------YF---NTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYL  387 (447)
Q Consensus       330 ~pigav~~~~~i~~~l~~~~----------------~~---~T~~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l  387 (447)
                      --+|++.++++++..+..+.                |.   .+..++.+...+|...+..+=.++   +.+.+.++..|+
T Consensus       276 P~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yl  355 (471)
T d1wyub1         276 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL  355 (471)
T ss_dssp             CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence            34788999999888775421                11   223344454444545565554544   456777888999


Q ss_pred             HHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF  444 (447)
Q Consensus       388 ~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~  444 (447)
                      .++|+..  .+....    .+.++ -||+-..    |.+..+..+.+.|++.|++-.
T Consensus       356 a~~L~~~--G~~~~~----~~~ff-~EFvv~~----~~~~~~~~i~k~L~~~G~~~~  401 (471)
T d1wyub1         356 KELLKEK--GYRVPY----DGPSM-HEFVAQP----PEGFRALDLAKGLLELGFHPP  401 (471)
T ss_dssp             HHHHHHT--TCBCSS----CSSCC-SCEEEBC----STTCCHHHHHHHHHHTTCCCC
T ss_pred             HHHHhhc--Cceecc----Cccee-eEEeecC----CCCCCHHHHHHHHHHcCCCCC
Confidence            9988542  332221    22221 2332211    111124568889999998643