Citrus Sinensis ID: 013309

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLAFQSF
ccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEEccccccEEEEEEEEEEccccccccccccccccEEEEEEEEEEEEEcEEEEcccHHHHccccccccccccccccEEEEEEEEccEEEEcEEEEcccccEEEEEEEEEEEEEEEEEEcccccccccEEcccccccEEEEEEEEEccccEEEEccccccEEEEEEEEccccccEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEcccccccEEEEEEEEEEccEEcccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccccccccEEEEHccccccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEEEEEEccccccEEEEEEEEEEccccHHHcccccccEEEEEEEEcEEEEEEcEEEcccccHHHccccccccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEcccccccccEEccccccccccccccHHHcccccccccccccccccccc
mkqlkfcsfsTFFIVLIHVLVCLSAslvstegfdsllelphsgsngtrskskrvifvgdfgakgdgfnddTEAFANAWKKAcsfpartkIVFSAgytflihpidisgpcksrltleisgtivapkdpdvwkglnrrRWLYFNRVNhltvqgggtingmgqewwsrsckinttnpcrhaptaitfhkcknlkvqnlRVVNSQQMHIAFTNCLRVVISNleviapaespntdgihisasrgvevknsivgtgddcisivGNSSLIRirnfacgpghgisigslgksnssvriHDIMVYGALISntqngvriktwqggsgsatnIQFLDVLMKNvsnpiiidqyycdspvpcanqtsavkvenitfihikgtsaTEEAIKFacsddspceglflEDVQLvshsggiakSFCWeaygssvgqvepppcfacsegliqqkapsnlafqsf
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELphsgsngtrskskrVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIsgtivapkdpdvwKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLAFQSF
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLAFQSF
***LKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLL***************RVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLI*************
********FSTFFIVLIHVLVCLSASLVSTEGF********************VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPC*********************
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLAFQSF
*KQLKFCSFSTFFIVLIHVLVCLSASLVSTE********************KRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFAC******************
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLAFQSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query445 2.2.26 [Sep-21-2011]
Q94AJ5444 Probable polygalacturonas yes no 0.916 0.918 0.638 1e-160
P35336467 Polygalacturonase OS=Acti N/A no 0.826 0.788 0.514 1e-107
Q02096462 Polygalacturonase OS=Pers N/A no 0.793 0.764 0.516 1e-105
O23147431 Polygalacturonase ADPG1 O no no 0.910 0.939 0.447 3e-98
P48978460 Polygalacturonase OS=Malu N/A no 0.788 0.763 0.504 3e-97
P05117457 Polygalacturonase-2 OS=So N/A no 0.824 0.803 0.504 3e-97
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.826 0.838 0.479 2e-95
Q8RY29433 Polygalacturonase ADPG2 O no no 0.817 0.840 0.486 3e-94
P43212514 Polygalacturonase OS=Cryp N/A no 0.851 0.737 0.428 1e-83
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.851 0.737 0.433 6e-83
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function desciption
 Score =  563 bits (1452), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/409 (63%), Positives = 323/409 (78%), Gaps = 1/409 (0%)

Query: 33  FDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVF 92
           F+SLL+LP   S  TR +S+R++ VG+FGAKG+G  DDT+AFA+AWK ACS   +T+I+ 
Sbjct: 31  FESLLQLPRRQSRSTRPRSERLLHVGNFGAKGNGVTDDTKAFADAWKTACSSKVKTRILV 90

Query: 93  SAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGG 152
              YT L+ PID+SGPCK+RLTL+ISGTI+AP DPDVW+GLNRR+WLYF+ ++ LTV+GG
Sbjct: 91  PENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGG 150

Query: 153 GTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLR 212
           GT+NGMGQEWW RSCK N +NPCR APTA+TFHKCKN++V+NL V++SQQMHIA T+C R
Sbjct: 151 GTVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRR 210

Query: 213 VVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP 272
           V IS L+VIAPA SPNTDGIHIS SRG+ + N+ V TGDDCISIV NS+ I I N  CGP
Sbjct: 211 VTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGP 270

Query: 273 GHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNV 332
           GHGISIGSLGKS S   + DI V  A+IS+T NGVRIKTWQGGSG  + I F ++ M NV
Sbjct: 271 GHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNV 330

Query: 333 SNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLE 392
           SNPIIIDQYYCDS  PCANQTSA+ +ENI+F+H++GTSA++EAIK +CSD SPC  + L+
Sbjct: 331 SNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQ 390

Query: 393 DVQLVSHSG-GIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNL 440
           D+ L   +G G  +SFCWEAYGSS GQV PPPC +     ++Q   S +
Sbjct: 391 DIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCLSDDTSFLEQSVQSGI 439

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
122894108445 polygalacturonase [Citrus sinensis] 1.0 1.0 0.997 0.0
317106742443 JHL06P13.19 [Jatropha curcas] 0.982 0.986 0.727 0.0
224058683447 predicted protein [Populus trichocarpa] 0.948 0.944 0.697 1e-177
255553121424 Polygalacturonase precursor, putative [R 0.928 0.974 0.707 1e-176
356557253443 PREDICTED: probable polygalacturonase At 0.988 0.993 0.618 1e-159
18412685444 putative polygalacturonase [Arabidopsis 0.916 0.918 0.638 1e-158
297839921444 hypothetical protein ARALYDRAFT_477239 [ 0.921 0.923 0.644 1e-155
5902387459 Similar to polygalacturonases [Arabidops 0.916 0.888 0.615 1e-155
357455167451 hypothetical protein MTR_2g103410 [Medic 0.934 0.922 0.633 1e-154
297743417441 unnamed protein product [Vitis vinifera] 0.977 0.986 0.584 1e-153
>gi|122894108|gb|ABM67700.1| polygalacturonase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/445 (99%), Positives = 445/445 (100%)

Query: 1   MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF 60
           MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF
Sbjct: 1   MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF 60

Query: 61  GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGT 120
           GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTL+ISGT
Sbjct: 61  GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGT 120

Query: 121 IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180
           IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT
Sbjct: 121 IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180

Query: 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV 240
           AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV
Sbjct: 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV 240

Query: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI 300
           EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI
Sbjct: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI 300

Query: 301 SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVEN 360
           SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVEN
Sbjct: 301 SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVEN 360

Query: 361 ITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVE 420
           ITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVE
Sbjct: 361 ITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVE 420

Query: 421 PPPCFACSEGLIQQKAPSNLAFQSF 445
           PPPCFACSEGLIQQKAPSNLAFQSF
Sbjct: 421 PPPCFACSEGLIQQKAPSNLAFQSF 445

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|317106742|dbj|BAJ53238.1| JHL06P13.19 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224058683|ref|XP_002299601.1| predicted protein [Populus trichocarpa] gi|222846859|gb|EEE84406.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255553121|ref|XP_002517603.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223543235|gb|EEF44767.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356557253|ref|XP_003546932.1| PREDICTED: probable polygalacturonase At1g80170-like [Glycine max] Back     alignment and taxonomy information
>gi|18412685|ref|NP_565232.1| putative polygalacturonase [Arabidopsis thaliana] gi|75332048|sp|Q94AJ5.1|PGLR5_ARATH RecName: Full=Probable polygalacturonase At1g80170; Short=PG; AltName: Full=Pectinase At1g80170; Flags: Precursor gi|15028105|gb|AAK76676.1| putative polygalacturonase [Arabidopsis thaliana] gi|23296942|gb|AAN13206.1| putative polygalacturonase [Arabidopsis thaliana] gi|332198245|gb|AEE36366.1| putative polygalacturonase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297839921|ref|XP_002887842.1| hypothetical protein ARALYDRAFT_477239 [Arabidopsis lyrata subsp. lyrata] gi|297333683|gb|EFH64101.1| hypothetical protein ARALYDRAFT_477239 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|5902387|gb|AAD55489.1|AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357455167|ref|XP_003597864.1| hypothetical protein MTR_2g103410 [Medicago truncatula] gi|87162606|gb|ABD28401.1| Glycoside hydrolase, family 28 [Medicago truncatula] gi|355486912|gb|AES68115.1| hypothetical protein MTR_2g103410 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297743417|emb|CBI36284.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.966 0.968 0.615 1.1e-149
TAIR|locus:2054396433 PGAZAT "polygalacturonase absc 0.817 0.840 0.486 5.5e-93
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.876 0.847 0.448 9e-93
TAIR|locus:2077407439 QRT2 "QUARTET 2" [Arabidopsis 0.826 0.838 0.479 8.1e-92
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.907 0.937 0.450 3.5e-91
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.826 0.786 0.451 1.5e-90
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.916 0.940 0.426 4.7e-87
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.858 0.778 0.442 1.2e-83
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.820 0.839 0.432 8.5e-81
TAIR|locus:2023817475 AT1G48100 [Arabidopsis thalian 0.871 0.816 0.410 6e-80
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
 Identities = 266/432 (61%), Positives = 334/432 (77%)

Query:    11 TFFIVLIHVLVCLSASLVST-EGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFND 69
             T   +L+ ++V  S +L +    F+SLL+LP   S  TR +S+R++ VG+FGAKG+G  D
Sbjct:     8 TLVTLLLLLVVASSLALTANANSFESLLQLPRRQSRSTRPRSERLLHVGNFGAKGNGVTD 67

Query:    70 DTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDV 129
             DT+AFA+AWK ACS   +T+I+    YT L+ PID+SGPCK+RLTL+ISGTI+AP DPDV
Sbjct:    68 DTKAFADAWKTACSSKVKTRILVPENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDV 127

Query:   130 WKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKN 189
             W+GLNRR+WLYF+ ++ LTV+GGGT+NGMGQEWW RSCK N +NPCR APTA+TFHKCKN
Sbjct:   128 WEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKN 187

Query:   190 LKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT 249
             ++V+NL V++SQQMHIA T+C RV IS L+VIAPA SPNTDGIHIS SRG+ + N+ V T
Sbjct:   188 MRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVST 247

Query:   250 GDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRI 309
             GDDCISIV NS+ I I N  CGPGHGISIGSLGKS S   + DI V  A+IS+T NGVRI
Sbjct:   248 GDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRI 307

Query:   310 KTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGT 369
             KTWQGGSG  + I F ++ M NVSNPIIIDQYYCDS  PCANQTSA+ +ENI+F+H++GT
Sbjct:   308 KTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGT 367

Query:   370 SATEEAIKFACSDDSPCEGLFLEDVQLVSHSG-GIAKSFCWEAYGSSVGQVEPPPCFACS 428
             SA++EAIK +CSD SPC  + L+D+ L   +G G  +SFCWEAYGSS GQV PPPC +  
Sbjct:   368 SASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCLSDD 427

Query:   429 EGLIQQKAPSNL 440
                ++Q   S +
Sbjct:   428 TSFLEQSVQSGI 439
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023817 AT1G48100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P05117PGLR_SOLLC3, ., 2, ., 1, ., 1, 50.50400.82470.8030N/Ano
Q94AJ5PGLR5_ARATH3, ., 2, ., 1, ., 1, 50.63810.91680.9189yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G80170
polygalacturonase, putative / pectinase, putative; polygalacturonase, putative / pectinase, putative; FUNCTIONS IN- polygalacturonase activity; INVOLVED IN- carbohydrate metabolic process; LOCATED IN- plant-type cell wall; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectin lyase fold (InterPro-IPR012334), Glycoside hydrolase, family 28 (InterPro-IPR000743), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- polygalacturonase, putative [...] (444 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT2G42860
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (224 aa)
      • 0.929
HEC3
HEC3 (HECATE 3); DNA binding / transcription factor; HECATE 3 (HEC3); FUNCTIONS IN- transcripti [...] (224 aa)
      • 0.659
AT2G43210
UBX domain-containing protein; UBX domain-containing protein; FUNCTIONS IN- molecular_function [...] (531 aa)
      • 0.655
AT1G03230
extracellular dermal glycoprotein, putative / EDGP, putative; extracellular dermal glycoprotein [...] (434 aa)
      • 0.506
anac089
anac089 (Arabidopsis NAC domain containing protein 89); transcription factor; Arabidopsis NAC d [...] (340 aa)
    •   0.462
NLM1
NLM1; arsenite transmembrane transporter/ water channel; an aquaporin whose expression level is [...] (296 aa)
    •   0.462
WIN2
WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase; Encodes HopW1-1-Interacting [...] (311 aa)
      • 0.438
AT3G07950
rhomboid protein-related; rhomboid protein-related; FUNCTIONS IN- molecular_function unknown; I [...] (304 aa)
      • 0.435
AT1G09440
protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (466 aa)
   •    0.429
QRT3
QRT3 (QUARTET 3); polygalacturonase; Encodes a polygalacturonase that plays a direct role in de [...] (481 aa)
      • 0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 0.0
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-125
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-105
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-97
PLN02155394 PLN02155, PLN02155, polygalacturonase 6e-95
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 4e-90
PLN03010409 PLN03010, PLN03010, polygalacturonase 5e-89
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 4e-27
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 8e-07
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  741 bits (1914), Expect = 0.0
 Identities = 307/445 (68%), Positives = 358/445 (80%), Gaps = 2/445 (0%)

Query: 1   MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF 60
           M   +  +     ++L  V+    A + +   F+SLL+LP   S  TR +S+RV+ VGDF
Sbjct: 1   MSYSRGGTEVLCLLLL--VVASSLAFVCNQGSFESLLQLPQRQSARTRPRSERVLHVGDF 58

Query: 61  GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGT 120
           GAKGDG  DDT+AF  AWK ACS   +T+IV  AGYTFL+ PID+ GPCK++LTL+ISGT
Sbjct: 59  GAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGT 118

Query: 121 IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180
           I+APKDPDVWKGLN R+WLYF+ VNHLTV+GGGT+NGMG EWW++SCKIN TNPCRHAPT
Sbjct: 119 IIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPT 178

Query: 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV 240
           AITFHKCK+L+V+NL V++SQQMHIAFTNC RV IS L+VIAPA SPNTDGIHISASRGV
Sbjct: 179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGV 238

Query: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI 300
            +K+SIV TGDDCISIVGNSS I+IRN ACGPGHGISIGSLGKSNS   + DI V GA +
Sbjct: 239 VIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFL 298

Query: 301 SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVEN 360
           SNT NGVRIKTWQGGSG+A+ I F ++ M+NVSNPIIIDQYYCDS  PCANQTSAVKVEN
Sbjct: 299 SNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVEN 358

Query: 361 ITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVE 420
           I+F+HIKGTSATEEAIKFACSD SPCEGL+LEDVQL+S +G   +SFCWEAYGSS GQV 
Sbjct: 359 ISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVY 418

Query: 421 PPPCFACSEGLIQQKAPSNLAFQSF 445
           PPPCF+ S   I+QK  S       
Sbjct: 419 PPPCFSDSTSFIKQKVQSGSTSFFL 443

Length = 443
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 445
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02155394 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.94
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.86
PLN02218431 polygalacturonase ADPG 99.83
PLN02793443 Probable polygalacturonase 99.83
PLN03003456 Probable polygalacturonase At3g15720 99.83
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.82
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.82
PLN03010409 polygalacturonase 99.81
PLN02155394 polygalacturonase 99.81
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.78
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.69
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.19
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.05
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.9
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.64
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.61
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.59
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.54
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.51
smart00656190 Amb_all Amb_all domain. 98.5
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.36
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.34
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.34
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.33
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.32
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.29
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.28
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.13
PLN02480343 Probable pectinesterase 98.02
PLN02634359 probable pectinesterase 98.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.97
smart00656190 Amb_all Amb_all domain. 97.92
PLN02682369 pectinesterase family protein 97.92
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.89
PLN02176340 putative pectinesterase 97.85
PLN02497331 probable pectinesterase 97.82
PRK10531422 acyl-CoA thioesterase; Provisional 97.71
PLN02665366 pectinesterase family protein 97.54
PLN02671359 pectinesterase 97.51
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.5
PLN02773317 pectinesterase 97.44
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.41
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.39
PLN02304379 probable pectinesterase 97.34
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.28
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.26
PLN02432293 putative pectinesterase 97.23
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.21
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.21
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.16
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.14
PLN02197588 pectinesterase 97.13
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.12
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.12
PLN02916502 pectinesterase family protein 97.12
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.11
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.05
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.05
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.04
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.04
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.0
PLN02314586 pectinesterase 96.99
PLN02301548 pectinesterase/pectinesterase inhibitor 96.97
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 96.86
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.79
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.72
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 96.34
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 96.08
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.56
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.43
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.09
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 92.74
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.7
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.21
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.7
PLN02480343 Probable pectinesterase 91.01
PRK10531422 acyl-CoA thioesterase; Provisional 86.11
PLN02665366 pectinesterase family protein 84.54
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 84.1
PLN02170529 probable pectinesterase/pectinesterase inhibitor 83.71
PLN02506537 putative pectinesterase/pectinesterase inhibitor 82.84
PLN02176340 putative pectinesterase 82.47
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 82.38
PLN02773317 pectinesterase 81.63
PLN02197588 pectinesterase 80.7
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-84  Score=655.40  Aligned_cols=394  Identities=75%  Similarity=1.250  Sum_probs=368.7

Q ss_pred             CCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCc
Q 013309           51 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVW  130 (445)
Q Consensus        51 ~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~  130 (445)
                      .++++||+||||+|||.+|||+|||+||++||+..+|++|+||+|++|++++|.|+||||++++|+++|+|+++.++..|
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w  128 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW  128 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence            45899999999999999999999999999889888889999999966999999999999999999999999999999999


Q ss_pred             CCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEEce
Q 013309          131 KGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNC  210 (445)
Q Consensus       131 ~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~  210 (445)
                      ++...+.|+++.+++|++|+|.|+|||+|+.||...++.+...++..||++|.|.+|+|++|++++++|||.|++++..|
T Consensus       129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~  208 (443)
T PLN02793        129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNC  208 (443)
T ss_pred             cCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEcc
Confidence            87777789999999999999999999999999986554444556677999999999999999999999999999999999


Q ss_pred             ecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCccE
Q 013309          211 LRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRI  290 (445)
Q Consensus       211 ~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~~v  290 (445)
                      ++++|++++|.++..++|+||||+.+|+||+|+||+|+++||||+++++++||+|+||+|..+|||+|||+|++++.+.|
T Consensus       209 ~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V  288 (443)
T PLN02793        209 RRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEV  288 (443)
T ss_pred             CcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcE
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999988888899


Q ss_pred             EeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEc
Q 013309          291 HDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTS  370 (445)
Q Consensus       291 ~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~  370 (445)
                      +||+|+||+|.++.+|++||+|+|+.|.|+||+|+||+|+++.+||.|++.|++...+|.+.++.+.|+||+|+||+++.
T Consensus       289 ~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~  368 (443)
T PLN02793        289 RDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS  368 (443)
T ss_pred             EEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999998877788777788999999999999998


Q ss_pred             cCcceEEEEecCCCCeeCeEEEeEEEEecCCCccceeeeeeeecccceecCCCccCCCCCcccccCCCcccccC
Q 013309          371 ATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLAFQS  444 (445)
Q Consensus       371 ~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~c~n~~~~~~~~~~p~~c~~~~~~~~~~~~~~~~~~~~  444 (445)
                      ..+.++.+.|+++.||+||+|+||+++...++.....|+|++|...|.+.|++|+..+.|+..|+.++-+..+.
T Consensus       369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~~~~~~~~~~~~~~~~~~~  442 (443)
T PLN02793        369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFSDSTSFIKQKVQSGSTSFF  442 (443)
T ss_pred             cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccccCCCcccccccCCcceeec
Confidence            76668999999999999999999999988776677899999999999999999999999999999998766543

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-21
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 2e-19
1nhc_A336 Structural Insights Into The Processivity Of Endopo 1e-16
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 4e-16
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 1e-15
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 8e-14
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-13
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-11
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-07
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Query: 149 VQGGGTINGMGQ--------EWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS 200
           + G GTI+G G          WW  +         ++ P  I  +K KN  + N+ ++NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 201 QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260
              H+ F++          +  P+ + NTDGI   +S+ + +  S + TGDD ++I    
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 261 SLIRIRNFAC-----GPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG 315
                RN +      G GHG+SIGS      ++ ++++ V    ++ T NG+RIK+ +  
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKSA 287
Query: 316 SGSATNIQFLDVLMKNVSNPIIIDQYY 342
           +G    +++ +V+MKNV+ PI+ID  Y
Sbjct: 288 AGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-131
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-120
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-115
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-110
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-108
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-107
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-106
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-101
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 4e-99
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-92
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-34
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 5e-33
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 4e-31
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-22
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 8e-17
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 3e-16
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 3e-12
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 2e-06
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  384 bits (988), Expect = e-131
 Identities = 79/401 (19%), Positives = 148/401 (36%), Gaps = 30/401 (7%)

Query: 44  SNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPI 103
           ++ +   + +   +  +GA  D   D   A  +AW  AC       +   +G   L   +
Sbjct: 10  TSASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSGGL--VYIPSGNYALNTWV 66

Query: 104 DISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWW 163
            ++G   +   +++ G I                          +    G + G G  + 
Sbjct: 67  TLTGGSAT--AIQLDGIIYRTGTASGNM----IAVTDTTDFELFSSTSKGAVQGFGYVYH 120

Query: 164 SRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAP 223
           +                 +      +  V ++ +V++   H     C    + N+ +   
Sbjct: 121 AEGTY---------GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG 171

Query: 224 AESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGK 283
                 DGI +  S  + V +  V   D+C+++   ++ I + +  C    G ++GSLG 
Sbjct: 172 -NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA 229

Query: 284 SNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYC 343
                 + DI+       ++     IK+  GGSG+ +N+   + +    +  + ID Y+ 
Sbjct: 230 DTD---VTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWS 285

Query: 344 DSPVPCANQTSAVKVENITFIHIKGTS---ATEEAIKFACSDDSPCEGLFLEDVQLVSHS 400
                 A     V++ NIT  + KGT    AT   I+  CSD +PC  L LED+ + + S
Sbjct: 286 S---MTAVAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES 342

Query: 401 GGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLA 441
           G      C  AYGS     +     + +       APS  +
Sbjct: 343 GSSELYLCRSAYGSGYCLKDSSSHTSYTTTSTVTAAPSGYS 383
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.91
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.86
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.85
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.85
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.85
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.8
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.79
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.73
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.58
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.49
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.47
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.43
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.4
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.29
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.22
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.18
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 99.17
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.75
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.62
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.62
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.53
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.52
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.49
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.42
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.35
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.33
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.3
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.29
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.25
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.24
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.24
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.23
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.23
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.18
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.17
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.14
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.08
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.07
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.07
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.9
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.64
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.63
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.46
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.42
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.06
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.86
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.78
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.72
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.71
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.64
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.64
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.75
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.5
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.1
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.07
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 94.78
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 92.73
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 91.37
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 90.54
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 87.3
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 82.1
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=4.8e-66  Score=526.39  Aligned_cols=337  Identities=25%  Similarity=0.420  Sum_probs=299.6

Q ss_pred             CCCCCCCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCC
Q 013309           46 GTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPK  125 (445)
Q Consensus        46 ~~~~~~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~  125 (445)
                      .++..+++++||++|||+|||.+|||+|||+||+ +|++.++++|+||+| +|++++|.|    +++++|+++|+|++++
T Consensus        19 ~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G-~yl~~~l~l----~s~v~l~l~gtL~~s~   92 (448)
T 3jur_A           19 REPQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEG-VFLTGPIHL----KSNIELHVKGTIKFIP   92 (448)
T ss_dssp             CCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSS-EEEESCEEC----CTTEEEEESSEEEECC
T ss_pred             cCCCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCC-cEEEeeeEe----CCCcEEEEEEEEEecC
Confidence            4566778899999999999999999999999999 565556799999999 999999999    8999999999999999


Q ss_pred             CcCCcCCC-----------CccccEEEeceeeEEEEeceEEecCC--chhhccccccCC---------------------
Q 013309          126 DPDVWKGL-----------NRRRWLYFNRVNHLTVQGGGTINGMG--QEWWSRSCKINT---------------------  171 (445)
Q Consensus       126 ~~~~~~~~-----------~~~~~i~~~~~~nv~I~G~G~IDG~G--~~~w~~~~~~~~---------------------  171 (445)
                      ++++|...           ...+||++.+++|++|+|.|+|||+|  +.||........                     
T Consensus        93 d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  172 (448)
T 3jur_A           93 DPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAE  172 (448)
T ss_dssp             CGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHH
T ss_pred             CHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhc
Confidence            99888311           13478999999999999999999999  889974321000                     


Q ss_pred             ----------CCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEE
Q 013309          172 ----------TNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVE  241 (445)
Q Consensus       172 ----------~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~  241 (445)
                                ...+..||++|.|.+|+|++|+|++++|+|.|++++..|++++|+|++|.++  ++|+||||+.+|+||+
T Consensus       173 ~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~  250 (448)
T 3jur_A          173 RGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYML  250 (448)
T ss_dssp             HTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEE
T ss_pred             ccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEE
Confidence                      0123579999999999999999999999999999999999999999999986  6899999999999999


Q ss_pred             EEeeEEecCCccEEEeCC-----------ceeEEEEeeEE--cCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCCcceE
Q 013309          242 VKNSIVGTGDDCISIVGN-----------SSLIRIRNFAC--GPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQNGV  307 (445)
Q Consensus       242 I~n~~i~~gdD~i~i~~~-----------~~ni~I~n~~~--~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi  307 (445)
                      |+||+|.++||||+++++           ++||+|+||+|  ..+| |++|||+    ..+.++||+|+||+|.++.+|+
T Consensus       251 I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t~~Gi  326 (448)
T 3jur_A          251 IEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNVERAL  326 (448)
T ss_dssp             EESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESCSEEE
T ss_pred             EEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecccceE
Confidence            999999999999999987           89999999999  6677 8999994    5679999999999999999999


Q ss_pred             EEEEecCCCceeeeEEEEeEEEecCCccE-EEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEccCcceEEEEecCCCCe
Q 013309          308 RIKTWQGGSGSATNIQFLDVLMKNVSNPI-IIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPC  386 (445)
Q Consensus       308 ~i~~~~g~~g~v~ni~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~~~~~~i~~~~~~~~  386 (445)
                      +||++.+++|.|+||+|+||+|+++.+|+ .|++.|+...     ....+.|+||+|+||+++. ...++.|.|.++.||
T Consensus       327 rIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~  400 (448)
T 3jur_A          327 RLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYV  400 (448)
T ss_dssp             EEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCE
T ss_pred             EEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCE
Confidence            99999988899999999999999999988 9999997641     1234689999999999998 445999999999999


Q ss_pred             eCeEEEeEEEEecC
Q 013309          387 EGLFLEDVQLVSHS  400 (445)
Q Consensus       387 ~~i~~~nv~i~~~~  400 (445)
                      ++|+|+||+++..+
T Consensus       401 ~~I~~~nv~i~~~~  414 (448)
T 3jur_A          401 KDILISDTIIEGAK  414 (448)
T ss_dssp             EEEEEEEEEEESCS
T ss_pred             eeEEEEEEEEEccc
Confidence            99999999998654
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 445
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 8e-90
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 3e-80
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-79
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-74
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-69
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-64
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 9e-63
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 7e-61
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  276 bits (708), Expect = 8e-90
 Identities = 79/401 (19%), Positives = 149/401 (37%), Gaps = 30/401 (7%)

Query: 44  SNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPI 103
           ++ +   + +   +  +GA  D   D   A  +AW  AC       +   +G   L   +
Sbjct: 10  TSASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSGGL--VYIPSGNYALNTWV 66

Query: 104 DISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWW 163
            ++G   +   +++ G I                          +    G + G G  + 
Sbjct: 67  TLTGGSAT--AIQLDGIIYRTGTASGNM----IAVTDTTDFELFSSTSKGAVQGFGYVYH 120

Query: 164 SRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAP 223
           +            +    +      +  V ++ +V++   H     C    + N+ +   
Sbjct: 121 AEGT---------YGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG 171

Query: 224 AESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGK 283
                 DGI +  S  + V +  V   D+C+++   ++ I + +  C    G ++GSLG 
Sbjct: 172 -NEGGLDGIDVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA 229

Query: 284 SNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYC 343
                 + DI+       ++     IK+  GGSG+ +N+   + +    +  + ID Y+ 
Sbjct: 230 DTD---VTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWS 285

Query: 344 DSPVPCANQTSAVKVENITFIHIKGTS---ATEEAIKFACSDDSPCEGLFLEDVQLVSHS 400
                 A     V++ NIT  + KGT    AT   I+  CSD +PC  L LED+ + + S
Sbjct: 286 S---MTAVAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES 342

Query: 401 GGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLA 441
           G      C  AYGS     +     + +       APS  +
Sbjct: 343 GSSELYLCRSAYGSGYCLKDSSSHTSYTTTSTVTAAPSGYS 383
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.84
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.83
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.8
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.8
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.73
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.68
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.6
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.55
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.6
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.55
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.37
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.19
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.14
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.05
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.89
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.86
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.64
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.51
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.49
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.9
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.8
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 96.36
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.28
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.22
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.95
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.62
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.58
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 94.28
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 93.86
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 91.72
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 80.39
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.2e-62  Score=497.19  Aligned_cols=338  Identities=22%  Similarity=0.396  Sum_probs=296.4

Q ss_pred             CCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEe-eeeeecCCCCCCeeEeEeeEEECCCCcCC
Q 013309           51 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLI-HPIDISGPCKSRLTLEISGTIVAPKDPDV  129 (445)
Q Consensus        51 ~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~-~~l~l~~~~~s~v~l~~~G~i~~~~~~~~  129 (445)
                      +.+++||+||||+|||++|||+|||+||+ ||+.  +++|+||+| +|++ ++|.|++  ++++.|+++|+|++......
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~--gg~V~iP~G-ty~l~~~i~l~g--~~~~~l~~~G~i~~~~~~~~   90 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSG-NYALNTWVTLTG--GSATAIQLDGIIYRTGTASG   90 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB--TCEEEECSS-EEEECSCEEEES--CEEEEEEECSEEEECCCCSS
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC--CCEEEECCC-cEEEeCcEEEcC--CCceEEEEeEEEEeccCCcc
Confidence            36799999999999999999999999998 7865  689999999 8866 5799988  57889999999988765443


Q ss_pred             cCCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEEc
Q 013309          130 WKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTN  209 (445)
Q Consensus       130 ~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~  209 (445)
                      |.    ..+....+...+.+.|.|+|||+|..||...         ..+|+++.|.+|+|++|++++++|++.|++.+..
T Consensus        91 ~~----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~---------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~  157 (422)
T d1rmga_          91 NM----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG---------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDT  157 (422)
T ss_dssp             EE----EEEEEEEEEEEECSSSCCEEECCTHHHHTTT---------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEE
T ss_pred             CE----EEeccCccEEEEEeecceEEecCcceecCCC---------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEec
Confidence            21    1233344555666778999999999999743         5789999999999999999999999999999999


Q ss_pred             eecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCcc
Q 013309          210 CLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVR  289 (445)
Q Consensus       210 ~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~~  289 (445)
                      |++++|+|++|.++ +.+|+||||+.++ ||+|+||+|.++||||+++++++||+|+|++|..+||++|||+|   ....
T Consensus       158 c~~v~i~nv~I~~~-~~~NtDGIdi~~s-nv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g---~~~~  232 (422)
T d1rmga_         158 CSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLG---ADTD  232 (422)
T ss_dssp             EEEEEEEEEEEECC-SSTTCCSEEEEEE-EEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEEC---TTEE
T ss_pred             cccEEEEeeEEcCC-CCCccceEeeccc-EEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeecc---CCCC
Confidence            99999999999986 4579999999765 89999999999999999999999999999999999999999986   3457


Q ss_pred             EEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEE
Q 013309          290 IHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGT  369 (445)
Q Consensus       290 v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~  369 (445)
                      ++||+|+||++.++.+|+++|++. +.|.|+||+|+||+|+++.+||.|++.|++....   ...+..|+||+|+||+++
T Consensus       233 V~nV~v~n~~~~~s~~g~~ik~~~-g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~---~~~~v~isnIt~~Ni~GT  308 (422)
T d1rmga_         233 VTDIVYRNVYTWSSNQMYMIKSNG-GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGDGVQLNNITVKNWKGT  308 (422)
T ss_dssp             EEEEEEEEEEEESSSCSEEEEEBB-CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB---SSSCCEEEEEEEEEEEEE
T ss_pred             EEEEEEEeEEEeCCCceEEEEEcC-CCceecceEEEEEEEecccccEEEecccCCCCCC---CCCCeEEEEEEEEeEEEE
Confidence            999999999999999999999864 4589999999999999999999999999876432   234678999999999998


Q ss_pred             cc---CcceEEEEecCCCCeeCeEEEeEEEEecCCCccceeeeeeeeccc
Q 013309          370 SA---TEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSV  416 (445)
Q Consensus       370 ~~---~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~c~n~~~~~~  416 (445)
                      ..   .+.+++|.|++..||+||+|+||+|+...++.+.+.|+|++|+..
T Consensus       309 ~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~  358 (422)
T d1rmga_         309 EANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY  358 (422)
T ss_dssp             ESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEEST
T ss_pred             ecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEE
Confidence            74   345899999999999999999999999988888899999999763
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure