Citrus Sinensis ID: 013326

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
MEGTNNVAAALIIEEGQTKGSQNQESGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFFADA
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccccccEEEEEcccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MEGTNNVAAALIIEegqtkgsqnqesgatsahtvghdswqQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEinmvssdspvRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRdgtsnksrdyeiqgsktDKIYNAIGAMSAIIVANAAgmipemqstlrQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAygssvsvylpeqiggaKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAaafpflgdfinvigsfslipltfvfpsMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQdysffada
MEGTNNVAAALIIEegqtkgsqnqESGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVrdgtsnksrdyeiqgsktDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFFADA
MEGTNNVAAALIIEEGQTKGSQNQESGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNilfftlvtiattvaavrivvKHIQDYSFFADA
*********************************VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTS****DYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFF***
*************************************SWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFFA**
MEGTNNVAAALIIEEGQ****************VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFFADA
****************************TS*HTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFF***
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MEGTNNVAAALIIEEGQTKGSQNQESGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFFADA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query445 2.2.26 [Sep-21-2011]
P92961442 Proline transporter 1 OS= yes no 0.930 0.936 0.418 2e-98
P92962439 Proline transporter 2 OS= no no 0.930 0.943 0.411 4e-96
Q60DN5473 Proline transporter 1 OS= no no 0.952 0.896 0.423 7e-96
Q69LA1434 Probable proline transpor no no 0.932 0.956 0.425 8e-96
Q9SJP9436 Proline transporter 3 OS= no no 0.959 0.979 0.394 3e-90
F4HW02451 GABA transporter 1 OS=Ara no no 0.946 0.933 0.266 8e-31
Q8L4X4452 Probable GABA transporter no no 0.829 0.816 0.270 4e-29
Q9FKS8446 Lysine histidine transpor no no 0.838 0.836 0.229 2e-24
Q9C6M2440 Lysine histidine transpor no no 0.840 0.85 0.253 1e-21
Q9C733453 Lysine histidine transpor no no 0.838 0.823 0.229 3e-21
>sp|P92961|PROT1_ARATH Proline transporter 1 OS=Arabidopsis thaliana GN=PROT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/416 (41%), Positives = 262/416 (62%), Gaps = 2/416 (0%)

Query: 30  SAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLL 89
           +AH +  DSW Q+ F+L    N  Y+L +S  I+VPLGW  G++ +      SLY+  L+
Sbjct: 27  TAHQISSDSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLI 86

Query: 90  SAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV- 148
           +  H   G+R IRYRDL G++YGR+ Y+ TW +QY+ L + N GFI+LA  +LK + ++ 
Sbjct: 87  AKLHEFGGRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF 146

Query: 149 SSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTS 208
             D  ++L  +I I+GL   IFA  +P +SA+  WL VS  ++  Y+++ +V+ VRDG  
Sbjct: 147 RDDHTMKLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVK 206

Query: 209 NKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTV 268
             SRDYEIQGS   K++   GA + ++ A   GM+PE+Q+T+RQP V NM KALY Q+T 
Sbjct: 207 TPSRDYEIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTA 266

Query: 269 GLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYET 328
           G+L  Y VT IGYWAYGSS S YL   + G  W+K   N +  LQS++S H+F SP YE 
Sbjct: 267 GVLPMYAVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLHIFASPTYEY 326

Query: 329 LDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFV 388
           +DTK  + + + F+ +N+  R   RG     +  ++A  PFLGDF+++ G+ S  PLTF+
Sbjct: 327 MDTKYGI-KGNPFAIKNLLFRIMARGGYIAVSTLISALLPFLGDFMSLTGAVSTFPLTFI 385

Query: 389 FPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSFFAD 444
             + ++ KAK       +K WHW N++FF+L+++A  +AAVR++    +++  FAD
Sbjct: 386 LANHMYYKAKNNKLNAMQKLWHWLNVVFFSLMSVAAAIAAVRLIAVDSKNFHVFAD 441
Proline transporter that mediates proline and glycine betaine transport. May be involved in long-distance transport of proline and required for phloem loading, retrieval of proline leaking from the phloem, or in xylem-to-phloem transfer. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline.
Arabidopsis thaliana (taxid: 3702)
>sp|P92962|PROT2_ARATH Proline transporter 2 OS=Arabidopsis thaliana GN=PROT2 PE=1 SV=1 Back     alignment and function description
>sp|Q60DN5|PROT1_ORYSJ Proline transporter 1 OS=Oryza sativa subsp. japonica GN=PROT1 PE=2 SV=1 Back     alignment and function description
>sp|Q69LA1|PROT2_ORYSJ Probable proline transporter 2 OS=Oryza sativa subsp. japonica GN=LOC_Os07g01090 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJP9|PROT3_ARATH Proline transporter 3 OS=Arabidopsis thaliana GN=PROT3 PE=1 SV=1 Back     alignment and function description
>sp|F4HW02|GAT1_ARATH GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
356565252449 PREDICTED: lysine histidine transporter- 0.977 0.968 0.620 1e-166
356513652450 PREDICTED: lysine histidine transporter- 0.997 0.986 0.593 1e-164
356513654401 PREDICTED: lysine histidine transporter 0.901 1.0 0.623 1e-157
388517879434 unknown [Lotus japonicus] 0.914 0.937 0.579 1e-150
242055335442 hypothetical protein SORBIDRAFT_03g04328 0.964 0.970 0.519 1e-141
414879110446 TPA: hypothetical protein ZEAMMB73_63214 0.932 0.930 0.531 1e-139
20804893447 proline transport protein-like [Oryza sa 0.984 0.979 0.508 1e-137
326495360445 predicted protein [Hordeum vulgare subsp 0.966 0.966 0.515 1e-129
332144260442 proline transporter [Elaeis guineensis] 0.984 0.990 0.414 2e-99
357119634489 PREDICTED: lysine histidine transporter 0.968 0.881 0.416 3e-97
>gi|356565252|ref|XP_003550856.1| PREDICTED: lysine histidine transporter-like 2-like [Glycine max] Back     alignment and taxonomy information
 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 270/435 (62%), Positives = 350/435 (80%)

Query: 11  LIIEEGQTKGSQNQESGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKW 70
           L +E+GQ KG+QN + G  SAH++  DSWQQ+G MLV  FNCG+ILSFSNL L PLGW W
Sbjct: 15  LNLEQGQEKGTQNDDYGLASAHSIDRDSWQQVGLMLVTSFNCGWILSFSNLCLWPLGWTW 74

Query: 71  GILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVA 130
           GI+C+  + FY+ Y+ WLL+AFHFID +RFIRYRDLMGY+YG+ MY+ TW  Q+LTLL+ 
Sbjct: 75  GIICLIVVGFYTAYANWLLAAFHFIDDRRFIRYRDLMGYVYGKSMYHLTWVFQFLTLLLG 134

Query: 131 NIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFII 190
           N+GFILL  ++LK IN   SDS +RLQ YI+I+G A+F ++   PT+SA+R WL  S ++
Sbjct: 135 NMGFILLGGKALKAINSEFSDSSLRLQYYIVITGAAYFFYSFFFPTISAMRNWLGASALL 194

Query: 191 TFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTL 250
           TFTY++ LL++LV+DG SN +RDY+I GS+  KI+NA GA+SA+IV N +G++PE+QSTL
Sbjct: 195 TFTYIIFLLIVLVKDGKSNSNRDYDISGSEVSKIFNAFGAISAVIVTNTSGLLPEIQSTL 254

Query: 251 RQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAV 310
           R+PAV NMRKALY QYTVG+LFYYGVT+IGYWAYG+ VS YLPE + G KWI V +NA V
Sbjct: 255 RKPAVKNMRKALYLQYTVGVLFYYGVTVIGYWAYGTMVSAYLPENLSGPKWINVLINAIV 314

Query: 311 FLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFL 370
           FLQS+VSQH+F++P++E LDTK L +++ M S EN+KR F +R   FT N FVAAAFPF+
Sbjct: 315 FLQSIVSQHMFVAPIHEALDTKFLEIDKPMHSGENLKRLFLLRAFFFTGNTFVAAAFPFM 374

Query: 371 GDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVR 430
            DF+N +GSFSL+PLTF+FPSMVFIK K + + I+KKAWHWFNI+F  L+TIATT++AVR
Sbjct: 375 SDFVNFLGSFSLVPLTFMFPSMVFIKVKGRTARIEKKAWHWFNIVFSFLLTIATTISAVR 434

Query: 431 IVVKHIQDYSFFADA 445
           ++V +IQ Y FFADA
Sbjct: 435 LIVNNIQKYHFFADA 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356513652|ref|XP_003525525.1| PREDICTED: lysine histidine transporter-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356513654|ref|XP_003525526.1| PREDICTED: lysine histidine transporter 2-like [Glycine max] Back     alignment and taxonomy information
>gi|388517879|gb|AFK47001.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|242055335|ref|XP_002456813.1| hypothetical protein SORBIDRAFT_03g043280 [Sorghum bicolor] gi|241928788|gb|EES01933.1| hypothetical protein SORBIDRAFT_03g043280 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|414879110|tpg|DAA56241.1| TPA: hypothetical protein ZEAMMB73_632148 [Zea mays] Back     alignment and taxonomy information
>gi|20804893|dbj|BAB92574.1| proline transport protein-like [Oryza sativa Japonica Group] gi|20804928|dbj|BAB92607.1| putative betaine/proline transporter [Oryza sativa Japonica Group] gi|56785119|dbj|BAD82757.1| putative betaine/proline transporter [Oryza sativa Japonica Group] gi|215768866|dbj|BAH01095.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189572|gb|EEC71999.1| hypothetical protein OsI_04856 [Oryza sativa Indica Group] gi|222619722|gb|EEE55854.1| hypothetical protein OsJ_04479 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|326495360|dbj|BAJ85776.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326509541|dbj|BAJ91687.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|332144260|dbj|BAK19791.1| proline transporter [Elaeis guineensis] gi|332144262|dbj|BAK19792.1| proline transporter [Elaeis guineensis] Back     alignment and taxonomy information
>gi|357119634|ref|XP_003561540.1| PREDICTED: lysine histidine transporter 2-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
TAIR|locus:2061156442 PROT1 "proline transporter 1" 0.930 0.936 0.399 6.7e-88
TAIR|locus:2078981439 PROT2 "proline transporter 2" 0.860 0.872 0.415 2.6e-86
TAIR|locus:2044835436 ProT3 "proline transporter 3" 0.928 0.947 0.393 1.7e-84
TAIR|locus:2199978451 AT1G08230 [Arabidopsis thalian 0.880 0.869 0.265 1.8e-32
TAIR|locus:2152995452 AT5G41800 [Arabidopsis thalian 0.791 0.778 0.287 4.7e-32
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.768 0.775 0.249 9.1e-29
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.730 0.736 0.242 3.9e-28
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.739 0.747 0.260 3.9e-28
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.764 0.770 0.256 5e-28
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.761 0.760 0.245 3.1e-27
TAIR|locus:2061156 PROT1 "proline transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 166/416 (39%), Positives = 245/416 (58%)

Query:    30 SAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLL 89
             +AH +  DSW Q+ F+L    N  Y+L +S  I+VPLGW  G++ +      SLY+  L+
Sbjct:    27 TAHQISSDSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLI 86

Query:    90 SAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV- 148
             +  H   G+R IRYRDL G++YGR+ Y+ TW +QY+ L + N GFI+LA  +LK + ++ 
Sbjct:    87 AKLHEFGGRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF 146

Query:   149 SSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTS 208
               D  ++L  +I I+GL   IFA  +P +SA+  WL VS  ++  Y+++ +V+ VRDG  
Sbjct:   147 RDDHTMKLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVK 206

Query:   209 NKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTV 268
               SRDYEIQGS   K++   GA + ++ A   GM+PE+Q+T+RQP V NM KALY Q+T 
Sbjct:   207 TPSRDYEIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTA 266

Query:   269 GLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYET 328
             G+L  Y VT IGYWAYGSS S YL   + G  W+K   N +  LQS++S H+F SP YE 
Sbjct:   267 GVLPMYAVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLHIFASPTYEY 326

Query:   329 LDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFV 388
             +DTK  + + + F+ +N+  R   RG     +  ++A  PFLGDF+++ G+ S  PLTF+
Sbjct:   327 MDTKYGI-KGNPFAIKNLLFRIMARGGYIAVSTLISALLPFLGDFMSLTGAVSTFPLTFI 385

Query:   389 FPSMVFIKAKAKASTIQKKAWHWFNXXXXXXXXXXXXXXXXXXXXKHIQDYSFFAD 444
               + ++ KAK       +K WHW N                       +++  FAD
Sbjct:   386 LANHMYYKAKNNKLNAMQKLWHWLNVVFFSLMSVAAAIAAVRLIAVDSKNFHVFAD 441
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI
GO:0015824 "proline transport" evidence=IGI
TAIR|locus:2078981 PROT2 "proline transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044835 ProT3 "proline transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152995 AT5G41800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P92961PROT1_ARATHNo assigned EC number0.41820.93030.9366yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb03g043280.1
hypothetical protein (442 aa)
(Sorghum bicolor)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-48
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 0.001
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  170 bits (434), Expect = 1e-48
 Identities = 95/407 (23%), Positives = 175/407 (42%), Gaps = 17/407 (4%)

Query: 38  SWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFH---- 93
           S  Q  F L+       +LS        LGW  G++ +  +   SLY+  LL        
Sbjct: 4   SAWQAVFNLIKAIIGAGVLSLPYAF-KQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVD 62

Query: 94  FIDGKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEIN-MVSSDS 152
            + GKR   Y DL   L+G +          + L    I +++ A  +L  I        
Sbjct: 63  KVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDTC 122

Query: 153 PVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSR 212
            + L  +I+I GL F   +  +P +SA+     V+ + +    +++LV+ V +     ++
Sbjct: 123 HISLVYFIIIFGLIFIPLS-FIPNLSALSILSLVAAVSSLY--IVILVLSVAELGVLTAQ 179

Query: 213 DYEIQGSKTD-KIYNAIGAMSAIIVA-NAAGMIPEMQSTLRQPAVM-NMRKALYSQYTVG 269
                G+KT+ K+     A+  I+ A     ++  +Q+T++ P+    M K L +   + 
Sbjct: 180 GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIV 239

Query: 270 LLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETL 329
            + Y  V ++GY A+G++V   +   +  + W+    N  + L  L+S  +   P+ + +
Sbjct: 240 TVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIV 299

Query: 330 DTKLLVLEESMFSRENIK-RRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFV 388
           +  L     S       K  R  +R  +      +A + PFLGDF++++G+ S  PLTF+
Sbjct: 300 ENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFI 359

Query: 389 FPSMVFIKAKAKASTIQKKAWHW----FNILFFTLVTIATTVAAVRI 431
            P +  +K K       +K W         +   L+ +A  VA + I
Sbjct: 360 LPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 445
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.96
PRK10483414 tryptophan permease; Provisional 99.96
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.94
PRK13629443 threonine/serine transporter TdcC; Provisional 99.89
TIGR00814397 stp serine transporter. The HAAAP family includes 99.85
PRK10655438 potE putrescine transporter; Provisional 99.64
PRK10644445 arginine:agmatin antiporter; Provisional 99.61
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.6
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.59
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.59
TIGR00909429 2A0306 amino acid transporter. 99.57
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.56
PRK11387471 S-methylmethionine transporter; Provisional 99.54
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.53
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.52
PRK10249458 phenylalanine transporter; Provisional 99.52
PRK11021410 putative transporter; Provisional 99.52
PRK15049499 L-asparagine permease; Provisional 99.51
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.5
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.49
PRK10746461 putative transport protein YifK; Provisional 99.48
TIGR00930 953 2a30 K-Cl cotransporter. 99.48
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.48
PRK10836489 lysine transporter; Provisional 99.48
PRK10238456 aromatic amino acid transporter; Provisional 99.46
PRK10580457 proY putative proline-specific permease; Provision 99.46
TIGR00913478 2A0310 amino acid permease (yeast). 99.44
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.4
TIGR00911501 2A0308 L-type amino acid transporter. 99.4
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.35
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.31
COG0531466 PotE Amino acid transporters [Amino acid transport 99.27
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.22
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.16
PF03845320 Spore_permease: Spore germination protein; InterPr 99.12
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.08
PRK15238496 inner membrane transporter YjeM; Provisional 98.93
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.9
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.89
COG0833541 LysP Amino acid transporters [Amino acid transport 98.88
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.86
KOG3832319 consensus Predicted amino acid transporter [Genera 98.81
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.8
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.62
PRK11375484 allantoin permease; Provisional 98.6
COG1457442 CodB Purine-cytosine permease and related proteins 98.47
COG3949349 Uncharacterized membrane protein [Function unknown 98.42
PRK12488549 acetate permease; Provisional 98.37
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.32
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.32
PRK11017404 codB cytosine permease; Provisional 98.26
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.12
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.1
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.07
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.99
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.97
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.94
TIGR00813407 sss transporter, SSS family. have different number 97.89
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.75
PRK00701439 manganese transport protein MntH; Reviewed 97.74
PRK09395551 actP acetate permease; Provisional 97.66
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.54
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.37
PRK10484523 putative transporter; Provisional 97.15
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.08
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.01
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.0
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 96.99
PRK15419502 proline:sodium symporter PutP; Provisional 96.97
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.96
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.17
PRK15015 701 carbon starvation protein A; Provisional 96.17
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.05
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.03
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.19
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.14
COG0733439 Na+-dependent transporters of the SNF family [Gene 94.29
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.27
COG4147529 DhlC Predicted symporter [General function predict 94.14
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 93.89
PRK15433439 branched-chain amino acid transport system 2 carri 93.79
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 93.62
KOG2466572 consensus Uridine permease/thiamine transporter/al 92.97
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 92.37
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 91.81
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 91.12
PRK15433439 branched-chain amino acid transport system 2 carri 89.53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-60  Score=463.59  Aligned_cols=401  Identities=26%  Similarity=0.476  Sum_probs=357.4

Q ss_pred             CCcccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----CcccccH
Q 013326           28 ATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFID----GKRFIRY  103 (445)
Q Consensus        28 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~----~~~~~sy  103 (445)
                      .++..++|++||+++.++.++.++|+|+|+ |||+++|.||..|++++++.++++.||..++.+|++..    ++|+++|
T Consensus        29 ~~~~~~~~~~s~~~a~~~~i~~~~G~gvLs-LP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y  107 (437)
T KOG1303|consen   29 WDPITPSRGGSWWQAAFHIINALIGAGVLS-LPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRY  107 (437)
T ss_pred             CCccccCCCCcceehhhheehhhhhhhhhh-hHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCh
Confidence            345556888999999999999999999999 99999999999999999999999999999999998765    5667889


Q ss_pred             HhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC-CcchhHHHHHHHHHHHHhhhhCCCcchhh
Q 013326          104 RDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSS-DS-PVRLQIYILISGLAFFIFANLVPTMSAIR  181 (445)
Q Consensus       104 ~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~-~~-~~~~~~~~~i~~~~~~pl~~~~~~l~~l~  181 (445)
                      +|+++++||+++++++...+.+.++++|+.|.+..+|++..+.+... +. ..+.+.|+++++++++|++ ++||++.++
T Consensus       108 ~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s-~lp~~~~l~  186 (437)
T KOG1303|consen  108 PDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLS-QLPNFHSLS  186 (437)
T ss_pred             HHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHH-HCCCcchhH
Confidence            99999999999999999999999999999999999999999998772 22 4446889999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHH
Q 013326          182 RWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRK  260 (445)
Q Consensus       182 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~  260 (445)
                      ++|..+.+..+.+..+.+..+..++.+...++..........  ..++++|++.|+| +|.++||||++||+|++  |+|
T Consensus       187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~--~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~  262 (437)
T KOG1303|consen  187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIP--TVFTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKK  262 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCc--chhhhhhheeeeecCCeeeeehHhhcCCchh--hhh
Confidence            999999999998888888888888855422222221111111  1178999999999 99999999999999998  999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccccccc
Q 013326          261 ALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESM  340 (445)
Q Consensus       261 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~  340 (445)
                      ++..++.+++++|+.+++.||++|||+++|+++.|++++.|+...+++++.+|++.+|+++.+|+.+.+|+....+. ++
T Consensus       263 ~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~-~~  341 (437)
T KOG1303|consen  263 ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKH-PD  341 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCC-cc
Confidence            99999999999999999999999999999999999975679999999999999999999999999999999988644 22


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHHH
Q 013326          341 FSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFN-ILFFTL  419 (445)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~~-i~~g~~  419 (445)
                      +.++....|.+.|+..++.+.++|+.+|+|+++++++||+...++++++|+++|++.+|.++...+++.+|.+ .++|++
T Consensus       342 ~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~  421 (437)
T KOG1303|consen  342 FKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLL  421 (437)
T ss_pred             ccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhh
Confidence            3233556899999999999999999999999999999999999999999999999999988889999999999 799999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 013326          420 VTIATTVAAVRIVVKH  435 (445)
Q Consensus       420 ~~~~gt~~si~~i~~~  435 (445)
                      +++.....++++++.+
T Consensus       422 ~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  422 LSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999988753

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 49/398 (12%), Positives = 117/398 (29%), Gaps = 106/398 (26%)

Query: 93  HFID---GKRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEI-NMV 148
           H +D   G+   +Y+D++      + +   +  + +  +  +I    L+   +  I    
Sbjct: 5   HHMDFETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSK 58

Query: 149 SSDSPVRLQIYILI----SGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVR 204
            + S      + L+      +  F+   L         +L                   +
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----FLMSPI---------------K 99

Query: 205 DGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYS 264
                 S    +   + D++YN     +   V+             R    + +R+AL  
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-------------RLQPYLKLRQALLE 146

Query: 265 QYTVGLLFYYGVTIIGYWAYGSSV---SVYLPEQI-----GGAKWIKV---FVNAAVF-- 311
                 +   GV  +G    G +     V L  ++         W+ +        V   
Sbjct: 147 LRPAKNVLIDGV--LG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 312 LQSLVSQHVFISPVYETL-----DTKLLVLEESMFSRENIKRRFFVRGVIFTANIF---V 363
           LQ L+ Q   I P + +      + KL +       R  +K + +   ++   N+     
Sbjct: 202 LQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 364 AAAFPFLGDF-------------INVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWH 410
             AF    +               + + + +   ++    SM     + K+  +  K   
Sbjct: 259 WNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLK--- 309

Query: 411 WFNILFFTL---------VTIATTVAAVRIVVKHIQDY 439
           + +     L           ++    ++R  +    ++
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.75
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.59
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.41
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.87
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.95
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.77
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 95.02
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.75  E-value=3e-15  Score=150.53  Aligned_cols=357  Identities=10%  Similarity=-0.015  Sum_probs=205.7

Q ss_pred             cccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhc
Q 013326           32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLY  111 (445)
Q Consensus        32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~  111 (445)
                      +++|+.+.+++....+++++|+|++. +|...++.|.. +++..++.++..........|.....++ .-...+..++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~-~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFL-LPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHH-HHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHh-hHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence            34578999999999999999999999 99999999974 6777777777777777777775544322 335667789999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH-HHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326          112 GREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILIS-GLAFFIFANLVPTMSAIRRWLAVSFII  190 (445)
Q Consensus       112 G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~-~~~~~pl~~~~~~l~~l~~~s~~~~~~  190 (445)
                      ||+..++......+........+....++.+..+++..   ......+.... .++++... ..+..+...+++......
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i-n~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---KDPWVLTITCVVVLWIFVLL-NIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG---GSHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc---cccHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHH
Confidence            99999999988888877777777777777776554321   10111121211 12222222 455666666666555444


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHH
Q 013326          191 TFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVG  269 (445)
Q Consensus       191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~  269 (445)
                      .+..++..++..+........ ..+..+....+...+..++....|+| |........+|+|||+| +.+|++..+..+.
T Consensus       158 ~i~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~~~~  235 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGETY-MAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIA  235 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCCCC-CCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhc-ccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-cccHHHHHHHHHH
Confidence            433222222222222111110 00111111122446778889999999 99999999999999975 5999999999999


Q ss_pred             HHHHHHHHhHHHhhcCCccc----cccccccC--CccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccc-ccccc
Q 013326          270 LLFYYGVTIIGYWAYGSSVS----VYLPEQIG--GAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLE-ESMFS  342 (445)
Q Consensus       270 ~~~y~~~g~~gy~~fG~~~~----~~il~~~~--~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~-~~~~~  342 (445)
                      .++|+..........+.+.-    ++...-+.  ..++...+..+...+..+.+..-.....-+.+...-+++. .+.++
T Consensus       236 ~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~  315 (445)
T 3l1l_A          236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFA  315 (445)
T ss_dssp             HHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGG
T ss_pred             HHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence            99999988887776664321    11111111  0123444455555555555443333333233222211100 01121


Q ss_pred             c---cchHHHHHHHHHHHHHHHHHHHh--cc----ChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc
Q 013326          343 R---ENIKRRFFVRGVIFTANIFVAAA--FP----FLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKA  401 (445)
Q Consensus       343 ~---~~~~~~~~~~~~~~~~~~~lA~~--~p----~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~  401 (445)
                      +   +..+.+...-..  +++.++...  .|    .++.+.++.+  ....+.+.++++.+++.+|++
T Consensus       316 ~~~~~~~P~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          316 RVNKAGTPVAGLIIVG--ILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             CCCTTCCCHHHHHHHH--HHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred             hcCCCCCCHHHHHHHH--HHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            1   111122221111  112222222  22    3566666655  345788999999999887654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 90.21
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.21  E-value=7.4  Score=36.39  Aligned_cols=107  Identities=7%  Similarity=-0.063  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHH----HHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326           38 SWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFL----AFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR  113 (445)
Q Consensus        38 s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~----~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~  113 (445)
                      |..+-++..++..+|.|-+=-.||...+-|=..-.+..+++    +.=..+.=..+.+..+.  .....++.+.....++
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~--g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA--QGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TTCCSHHHHHHHHSCS
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CcccHHHHHHHHhccC
Confidence            45778888999999997554389997665422222322222    22122222223332222  1245677777666544


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326          114 EMYYYTWAIQYLTLLVANIGFILLAARSLKEIN  146 (445)
Q Consensus       114 ~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~  146 (445)
                      +....+.....+..+..++-|.+..+..+..+.
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~  116 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAI  116 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322333444455555566667777666655444